BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036107
(441 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255552099|ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543729|gb|EEF45257.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 549
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 242/547 (44%), Positives = 304/547 (55%), Gaps = 110/547 (20%)
Query: 1 MPPKHDIWKLLSQSHLQKHHKINP-----LGCLLCNRHCI----TNELTGLPSWLKFFD- 50
MP KH I KL K K NP L L H + E LP+WL
Sbjct: 1 MPQKHQIHKLYQIFSSPKTLKSNPSLSKSLPIPLTTPHSADSPDSPESPDLPTWLHSNKK 60
Query: 51 TQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVE 110
+ PD DFVIPSLA WVE L + + +H L +D+D+VSEIL+K YP D VV+
Sbjct: 61 PEFPDGDFVIPSLADWVEHHNLGDIKEVGNHLLFHAQVSDIDRVSEILKKHYPCTDSVVQ 120
Query: 111 ALK-C---------------FC---------FTWAKTQTGYMHTPETYNAMVEALGKSKK 145
AL C FC FTWAK QTGY+H P+ Y+ MV+ LG+ KK
Sbjct: 121 ALNDCGVNPTNNLISQLLNRFCNDWVPALGLFTWAKHQTGYVHPPDLYDLMVDILGRRKK 180
Query: 146 FGLMWELVKEIDELSNGYVSLAAMSTVMRRL-----------------------DTRAMS 182
F MWELVKE++ L GYVSL M VMRRL D A++
Sbjct: 181 FSFMWELVKEMENLE-GYVSLVTMKKVMRRLARAGNFQDAVEAFRGIEKLGVRKDIEALN 239
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
VLMD LVK SV HAY F++FKD I + Q F++L+HG+CK RK D A+K M EM + G
Sbjct: 240 VLMDALVKEGSVEHAYSAFMEFKDSIHVDFQSFNILLHGYCKARKLDDARKIMDEMDKQG 299
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
F P+ VSYTCFIE YC+ KDFR V+ EMQEK CKP+VIT TI MHAL KAKQ+ +AL
Sbjct: 300 FQPNVVSYTCFIELYCKLKDFRNVEAIFSEMQEKSCKPNVITYTIFMHALGKAKQVNKAL 359
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSA 343
+VYE MKS+ C+ D SFYSSLIF+L+++ R L YNTMI+SA
Sbjct: 360 EVYEMMKSNCCVPDASFYSSLIFVLTQSGRLKDAWDVFEDMKKQGVSPDLLTYNTMITSA 419
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM--------- 394
C EE NALKL +++EEDSCKPD +T+A LKMCC KKR+K +LN M
Sbjct: 420 CTHLEEENALKLLRRMEEDSCKPDIQTYAPLLKMCCRKKRIKVLKFLLNHMFKNNISIDL 479
Query: 395 -----------------------REMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431
EM+ KG++P++ T+KML EELE+ +L AKE+I +L
Sbjct: 480 GTYVLLVGGLCKSGKLELACSFFEEMVMKGLIPRDRTYKMLVEELEQNNLTEAKEKIQKL 539
Query: 432 LTHATEQ 438
+ +Q
Sbjct: 540 MFQTEDQ 546
>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial [Vitis vinifera]
Length = 535
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 243/527 (46%), Positives = 307/527 (58%), Gaps = 111/527 (21%)
Query: 22 INPLGCLLCNRHCITN------ELTGLPSWLKFFDTQSP-----DEDFVIPSLASWVESL 70
+N L L N C T E LP W+KF +P D+DFVIP LA W E+
Sbjct: 9 LNALHYLSLNPFCTTTGSPTTAESPELPDWVKFSQNNNPAGSDSDDDFVIPKLAYWAENQ 68
Query: 71 KLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEAL----------------KC 114
K + +S++ + L E ++D+DK+SE+L+ R+ S D VV+AL K
Sbjct: 69 KHDHRSKVDGYVLKETIDSDIDKISELLKFRHSSADAVVQALGGCGVSVSESLVEQVLKR 128
Query: 115 FC---------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVS 165
F F WAK QTGY H+ +YN+MV+ LGK KKF LMWELV+E+D L GYVS
Sbjct: 129 FSNDWIPAFGFFKWAKAQTGYRHSMNSYNSMVDILGKLKKFDLMWELVEEMDRLG-GYVS 187
Query: 166 LAAMSTVMRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFL 202
LA M+ VMRRL DT AM+ LMD LVK NSV HA VF+
Sbjct: 188 LATMTKVMRRLARASRWKDAIEAFRGMERFGVKKDTLAMNTLMDALVKENSVEHANDVFV 247
Query: 203 KFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
+FKD I L+ F+VLIHGWCK RK D A K+M EM +HGF PD +SYT +E YCREKD
Sbjct: 248 EFKDSILLNPHTFNVLIHGWCKARKMDNALKSMAEMKEHGFCPDVISYTSIVEAYCREKD 307
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
FRKV+ L EM+EKGC P+V+T TIVMHAL K K+I +AL+VYEKMK C+ DTSFYSS
Sbjct: 308 FRKVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSS 367
Query: 323 LIFILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDS 363
LI+ILSKA R L YNTMIS+AC+ S+E +ALKL K+EE S
Sbjct: 368 LIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKMEESS 427
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLM----------------------------- 394
CKPD T++ LKMCC RMK +LN M
Sbjct: 428 CKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLLVHGLCKSGKLEHAC 487
Query: 395 ---REMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQ 438
EM+SKG+VP++ THK+L +ELEKKS+ AKER+++L++ A +Q
Sbjct: 488 LFFEEMVSKGLVPKDCTHKLLLKELEKKSMVEAKERVEKLMSQARQQ 534
>gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa]
gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 219/498 (43%), Positives = 281/498 (56%), Gaps = 104/498 (20%)
Query: 38 ELTGLPSWLKFFDTQSP----DEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDK 93
E LP+WL Q P D DFVIPSLA+WVE+ L + S L E ++ DK
Sbjct: 1 ESPDLPTWLSNSQNQKPSDPDDGDFVIPSLANWVENPNLETHRNVPSPLLFEPQVSNADK 60
Query: 94 VSEILRKRYPSPDKVVEALK---------------------CFC----FTWAKTQTGYMH 128
+SEIL+KRY S VV+AL C F WAK QT Y+H
Sbjct: 61 LSEILKKRYSSEAAVVKALNESGIDATNELVSQILMRFDSHCVVAFGVFIWAKNQTSYVH 120
Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL------------ 176
TPE Y+ M++ LGK KKF LMW LV+++ L NGYVSLA S VMRRL
Sbjct: 121 TPELYDYMIDILGKFKKFSLMWSLVEQMKGL-NGYVSLATASKVMRRLAKARKYKDAIDV 179
Query: 177 -----------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKT 225
D A++VLMD LVK V A+ FL+FKDCI+L S F++LIHG+CK
Sbjct: 180 FRGIEKYGASKDREALNVLMDALVKEGDVEDAHSAFLEFKDCITLDSSSFNILIHGYCKA 239
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
R A+K M+EM +HGF PD VSY+CFI YC +KDFR V+ EMQEKGCKP+VIT
Sbjct: 240 RMFVVARKIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQEKGCKPNVITY 299
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR------------- 332
T VMHAL KA+Q+ EAL+VYEKMK + CL D+ FYSSLI++LS++ R
Sbjct: 300 TTVMHALGKARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQSGRIKDAWDVFEDMEK 359
Query: 333 ------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
+YNTMISSAC S+ G+ALKL +++E DSCKPD +T+A LKMCC +K +K
Sbjct: 360 QGVCRNLWVYNTMISSACAHSQGGSALKLLERMEGDSCKPDVKTYAPLLKMCCRRKSIKL 419
Query: 387 GMLVLNLM--------------------------------REMLSKGIVPQESTHKMLAE 414
+L+ M +E + KG+VP T K L E
Sbjct: 420 LKFLLSHMFKNNVSVDLGTYTLLVNEFCRNGKLEHACFYFQEAVLKGMVPMVKTFKALVE 479
Query: 415 ELEKKSLGNAKERIDELL 432
ELE+K++ KE+I++L+
Sbjct: 480 ELEQKNMKEMKEKIEKLM 497
>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 591
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 230/510 (45%), Positives = 285/510 (55%), Gaps = 106/510 (20%)
Query: 36 TNELTGLPSWLKFFDT------QSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHET 89
+E LP W+KFFDT +S D+ FVIP LA W+ES KL + +++ L E
Sbjct: 82 VSESPDLPDWIKFFDTKTSTHLESEDDVFVIPPLAHWLESQKLEDNNKVVQKKLGETCNN 141
Query: 90 DVDKVSEILRKRYPSPDKVVEAL----------------KCF---------CFTWAKTQT 124
+VDK+S +L RYPSP+ V EAL K F F WAK Q
Sbjct: 142 EVDKISTMLENRYPSPENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQI 201
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-------- 176
Y H+PE+YN+MV+ LGK+K F LMWELV E++ L+ G VSL MS V+RRL
Sbjct: 202 PYRHSPESYNSMVDILGKAKNFRLMWELVDEMNHLA-GSVSLETMSKVIRRLARAGRHQE 260
Query: 177 ---------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG 221
DT AM+VLMD LVK SV A+ VF + K I + F+VLIHG
Sbjct: 261 AIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHG 320
Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
+CK +K D A K M E+ + G PD +SYT FIE +CREKDFR VD L +M+ KGCKP+
Sbjct: 321 YCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPN 380
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------- 333
VIT TI+MHAL KAKQI EALKVYEKMK + C+ D+SFYSSLIFIL KA R
Sbjct: 381 VITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVE 440
Query: 334 -----------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
L YNT+IS AC S+E AL L K+EE SCKPD +T+ LKM C KK
Sbjct: 441 DMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKK 500
Query: 383 RMK------------------------------DGMLVL--NLMREMLSKGIVPQESTHK 410
RMK +G L L + EMLSK +VP++ST K
Sbjct: 501 RMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFK 560
Query: 411 MLAEELEKKSLGNAKERIDELLTHATEQRT 440
ML EELE+KS+ + I+ L+ AT Q T
Sbjct: 561 MLKEELERKSMLEEMKIIENLMFCATNQDT 590
>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 614
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 230/510 (45%), Positives = 285/510 (55%), Gaps = 106/510 (20%)
Query: 36 TNELTGLPSWLKFFDT------QSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHET 89
+E LP W+KFFDT +S D+ FVIP LA W+ES KL + +++ L E
Sbjct: 105 VSESPDLPDWIKFFDTKTSTHLESEDDVFVIPPLAHWLESQKLEDNNKVVQKKLGETCNN 164
Query: 90 DVDKVSEILRKRYPSPDKVVEAL----------------KCF---------CFTWAKTQT 124
+VDK+S +L RYPSP+ V EAL K F F WAK Q
Sbjct: 165 EVDKISTMLENRYPSPENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQI 224
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-------- 176
Y H+PE+YN+MV+ LGK+K F LMWELV E++ L+ G VSL MS V+RRL
Sbjct: 225 PYRHSPESYNSMVDILGKAKNFRLMWELVDEMNHLA-GSVSLETMSKVIRRLARAGRHQE 283
Query: 177 ---------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG 221
DT AM+VLMD LVK SV A+ VF + K I + F+VLIHG
Sbjct: 284 AIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHG 343
Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
+CK +K D A K M E+ + G PD +SYT FIE +CREKDFR VD L +M+ KGCKP+
Sbjct: 344 YCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPN 403
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------- 333
VIT TI+MHAL KAKQI EALKVYEKMK + C+ D+SFYSSLIFIL KA R
Sbjct: 404 VITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVE 463
Query: 334 -----------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
L YNT+IS AC S+E AL L K+EE SCKPD +T+ LKM C KK
Sbjct: 464 DMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKK 523
Query: 383 RMK------------------------------DGMLVL--NLMREMLSKGIVPQESTHK 410
RMK +G L L + EMLSK +VP++ST K
Sbjct: 524 RMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFK 583
Query: 411 MLAEELEKKSLGNAKERIDELLTHATEQRT 440
ML EELE+KS+ + I+ L+ AT Q T
Sbjct: 584 MLKEELERKSMLEEMKIIENLMFCATNQDT 613
>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Glycine max]
Length = 558
Score = 340 bits (872), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 218/542 (40%), Positives = 294/542 (54%), Gaps = 120/542 (22%)
Query: 1 MPPKHDIWKLLSQSHLQKHHKINPLGC--------LLCNRHCITNELTGLPSWLKFFDTQ 52
MP K KL + H+++P L N C E LP WLKF DT
Sbjct: 1 MPSKFRFLKLFT-------HRLSPRTAAANGSHRFLYGNPLCTMAESPELPPWLKFSDTP 53
Query: 53 SP-----DEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDK 107
+P D++FVIPSLA WV++ L + ++ + + +D+ +++ V+++L+KRYPSP+
Sbjct: 54 TPPDADSDDNFVIPSLAHWVDTHMLTTKPKVLTQSPKQDNLDELEAVTKVLQKRYPSPEL 113
Query: 108 VVEALKCFCFT-------------------------WAKTQTGYMHTPETYNAMVEALGK 142
AL F WAK+ TGY H+PE YN MV+ LGK
Sbjct: 114 ASLALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAKSLTGYRHSPELYNLMVDILGK 173
Query: 143 SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-----------------------DTR 179
+ F M ELV+E+ L GYV+L M+ VMRRL DT
Sbjct: 174 CRSFDSMSELVEEMARL-EGYVTLETMTKVMRRLARARKHEDAIEAFGRMEKFGVKKDTA 232
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
A++VL+D LVK +SV HA+KV L+FK I LSS+ F+VL+HGWC+ R D A+KAM++M
Sbjct: 233 ALNVLIDALVKGDSVEHAHKVVLEFKGSIPLSSRSFNVLMHGWCRARDFDNARKAMEDMK 292
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+HGF PD SYT FIE Y E+DFRKVD L+EM+E GC P+ +T T VM L KA Q+
Sbjct: 293 EHGFEPDVFSYTNFIEAYGHERDFRKVDQVLEEMRENGCPPNAVTYTSVMLHLGKAGQLR 352
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMI 340
+AL+VYEKMKSD C+ DT FYSS+IFIL KA R + YN+MI
Sbjct: 353 KALEVYEKMKSDGCVADTPFYSSMIFILGKAGRLKDACDVFEDMPKQGVVRDVVTYNSMI 412
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK------KRMKDGM------ 388
S+AC S E AL+L +++E+ SCKP+ T+ R LKMCC K K + D M
Sbjct: 413 STACAHSREETALRLLKEMEDGSCKPNVGTYHRLLKMCCKKKRMKVLKFLLDHMFKNNIS 472
Query: 389 -------LVLNLMR-------------EMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
L++N +R EM+ +G P+ ST K LA ELE KS+ K R+
Sbjct: 473 PDLATYSLLVNALRKSGKVEDAYSFLEEMVLRGFTPKPSTLKKLAGELESKSMLEEKVRV 532
Query: 429 DE 430
+E
Sbjct: 533 EE 534
>gi|356540343|ref|XP_003538649.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Glycine max]
Length = 543
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 198/515 (38%), Positives = 275/515 (53%), Gaps = 110/515 (21%)
Query: 34 CITNELTGLPSWLKFFDTQSP-----DEDFVIPSLASWVESLKLNEQSRISSHALSEDHE 88
C E LP WLKF DT +P D++FVIPSLA WV++ L + ++ + + +D+
Sbjct: 32 CTMAESPELPPWLKFSDTPTPPDADSDDNFVIPSLAHWVDTHMLITKPKVLTQSPKQDNL 91
Query: 89 TDVDKVSEILRKRYPSPDKVVEALKCFCFT-------------------------WAKTQ 123
++D ++++L+KRYPSP+ AL F WAK+Q
Sbjct: 92 DELDAITKVLKKRYPSPELAALALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAKSQ 151
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL------- 176
TGY H+PE N MV+ LGK K F M +LV+E+ +L GYV+L M+ V+RRL
Sbjct: 152 TGYRHSPELCNLMVDILGKCKSFDPMSDLVEEMAKLEQGYVTLETMAKVIRRLAKARKHE 211
Query: 177 ----------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIH 220
DT A++VL+D LVK +SV HA+KV L+FK I LSS F+VL+H
Sbjct: 212 DAIEAFRRMDKFGVNKDTAALNVLIDALVKGDSVEHAHKVVLEFKGLIPLSSHSFNVLMH 271
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
GWC+ RK D A+KAM++M + GF PD SYT FIE YC E+DFRKVD L+EM+E GC P
Sbjct: 272 GWCRARKFDNARKAMEDMKELGFEPDVFSYTSFIEAYCHERDFRKVDQVLEEMRENGCPP 331
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------- 333
+ +T T VM L KA Q+ +AL+VYEKMK D C+ DT YS +IFIL KA R
Sbjct: 332 NAVTYTTVMLHLGKAGQLSKALEVYEKMKCDGCVADTPVYSCMIFILGKAGRLKDACDVF 391
Query: 334 ------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCK---------------- 365
+ YNTMIS+AC S E AL+L +++E+ SCK
Sbjct: 392 EDMPKQGVVRDVVTYNTMISTACAHSREETALRLLKEMEDGSCKPNVGTYHPLLKMCCKK 451
Query: 366 -------------------PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
PD T++ + C ++ D + + EM+ KG P+
Sbjct: 452 KRMKVLKFLLDHMFKNDISPDLATYSLLVNALCKTGKVADA---YSFLEEMVLKGFTPKP 508
Query: 407 STHKMLAEELEKKSLGNAKERIDELLTHATEQRTF 441
ST K LA ELE S+ KER++E + ++++
Sbjct: 509 STLKGLAGELESLSMLEEKERVEEWMDRFSQKQNI 543
>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22670, mitochondrial; Flags: Precursor
gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 562
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 203/519 (39%), Positives = 275/519 (52%), Gaps = 121/519 (23%)
Query: 35 ITNELTGLPSWLKFFDTQSP----------DEDFVIPSLASWVESLKLNEQSRISSHALS 84
+ E LPSW+K F + P DEDFVIPSLA+WVES K + Q ++S +
Sbjct: 37 VAAESPELPSWIKDFLSNKPSSSSSSVSKDDEDFVIPSLANWVESQKFSRQ-QVSEGNVV 95
Query: 85 EDHETDVDKVSEILRKRYPSPDKVVEAL-KCFC------------------------FTW 119
+ D+DKV + L K+ S + VV+ L KC F W
Sbjct: 96 KKPVEDIDKVCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIW 155
Query: 120 AKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG-YVSLAAMSTVMRRL-- 176
A +QTGY+H+ TYNAMV+ LGK + F LMWELV E+++ V+L MS VMRRL
Sbjct: 156 ANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAK 215
Query: 177 ----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
DT AM+ LMD LVK NS+ HA++VFLK D I ++
Sbjct: 216 SGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDART 275
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F++LIHG+CK RK D A+ M M F+PD V+YT F+E YC+E DFR+V+ L+EM+
Sbjct: 276 FNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMR 335
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
E GC P+V+T TIVMH+L K+KQ+ EAL VYEKMK D C+ D FYSSLI ILSK RF
Sbjct: 336 ENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFK 395
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEE---DSCKPDCETHA 372
L+YNTMIS+A S + AL+L +++E+ +SC P+ ET+A
Sbjct: 396 DAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYA 455
Query: 373 RSL-----------------------------------KMCCHKKRMKDGMLVLNLMREM 397
L + C ++++ L E
Sbjct: 456 PLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACL---FFEEA 512
Query: 398 LSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436
+ KG+VP++ST KML +ELEKK++ AK +I L+ T
Sbjct: 513 VRKGMVPRDSTCKMLVDELEKKNMAEAKLKIQSLVQSKT 551
>gi|224107983|ref|XP_002314677.1| predicted protein [Populus trichocarpa]
gi|222863717|gb|EEF00848.1| predicted protein [Populus trichocarpa]
Length = 481
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 181/483 (37%), Positives = 262/483 (54%), Gaps = 103/483 (21%)
Query: 55 DEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEAL-- 112
+ +F I LA+WV++ L I++ + + D+DKV IL++ +PS D VV+AL
Sbjct: 2 NGNFFISPLANWVDNPTLENFKSIAAESGTG---GDIDKVKGILKRHFPSEDAVVKALDE 58
Query: 113 -----------------------KCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLM 149
F WAK QTGY+HTP Y+ +V+ LGK KKFG+M
Sbjct: 59 SGINATNDLVSQLLERFSNQWITALGVFIWAKNQTGYVHTPRLYDLVVDILGKCKKFGIM 118
Query: 150 WELVKEIDELSNGYVSLAAMSTVMRRL-----------------------DTRAMSVLMD 186
W++V E++EL NG VS + MS V+RRL DT A++++M
Sbjct: 119 WKVVNEMNEL-NGQVSFSTMSIVVRRLASSGMYKDVIDVLRGLEKYRVKKDTVALNMVMH 177
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
L K+ AY VFL+FKD I+L S F++LIHG+C+ R D A+K M+EM +HGF PD
Sbjct: 178 ALAKQGGAKDAYSVFLEFKDSITLDSHSFNILIHGYCEARMLDDARKTMEEMEKHGFRPD 237
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
SYTCFI+ YC++KDFR V+ L EM EKGC+P VI +I + AL KA++I EAL+VYE
Sbjct: 238 ASSYTCFIKAYCKQKDFRNVEVILNEMGEKGCEPDVIAYSIYIRALGKARKINEALEVYE 297
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRS 347
KM + C D F+S+LI++L ++ R YN MI AC
Sbjct: 298 KMNKNSCKPDAKFFSTLIYVLGRSGRLNDAWYVFEDMENHGVSRDLWTYNAMIYHACANR 357
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN--------------- 392
+ +ALKL +++E +SCKPD ET+ LKMCC K MK +L+
Sbjct: 358 QGNSALKLLERMEVNSCKPDLETYQPLLKMCCKMKDMKVLKFLLSHMFNNNVRIDLSTYA 417
Query: 393 -LMREM----------------LSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA 435
L+RE+ + GIVP++ T+++L +EL + ++ K +I++L+ A
Sbjct: 418 LLIRELAESGKLEHACFFFQDAVLNGIVPKDRTYEILLKELGQNNMVEMKGKIEKLMLQA 477
Query: 436 TEQ 438
EQ
Sbjct: 478 KEQ 480
>gi|357480939|ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512090|gb|AES93713.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 596
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 199/525 (37%), Positives = 275/525 (52%), Gaps = 110/525 (20%)
Query: 14 SHLQKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSP---DEDFVIPSLASWVESL 70
S++ H INP ++ N + E LP W+ F D +P D+DFVIPSLA WV+S
Sbjct: 68 SNVSPHFFINPFCTVVVN----SPESPELPPWVMFSDKPTPSNSDDDFVIPSLAHWVDSS 123
Query: 71 KLNEQSRISSHALSED--HETDVDKVSEILR-KRYPSPDKVVEAL--------------- 112
L + ++ + E+ H DV+K+S L+ +R+ S D VV+AL
Sbjct: 124 ILQTKPKLFAKPSLEESIHLEDVEKISTFLKEQRHSSHDHVVQALDGSGFRVSNSLVMQV 183
Query: 113 -KCFC---------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG 162
K F F WAK QT Y+H+PE YN MV+ LGK+K+F LMW+LVKE+ + G
Sbjct: 184 LKRFGNDWVAAYGFFIWAKKQTPYVHSPEVYNLMVDILGKAKEFDLMWKLVKEMKRIE-G 242
Query: 163 YVSLAAMSTVMRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYK 199
YV L MS VMRR DT A++ L+D LVK S+ A+
Sbjct: 243 YVCLDTMSKVMRRFAKAQRHEDAVEAFRGMGKYGVEKDTAALNKLLDALVKGQSIEIAHN 302
Query: 200 VFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR 259
V +FK + LSS F++LI+GWCK R + A+K M+E +HGF PD +Y FIE YC
Sbjct: 303 VLDEFKSSVPLSSPSFNILINGWCKVRNFEKARKVMEERKEHGFEPDVFTYNNFIESYCH 362
Query: 260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF 319
+KDFRKVD L+EM+ GC P+ +T TI++ KA Q+ +AL+ YE+MK D + DT F
Sbjct: 363 DKDFRKVDEVLEEMRGNGCPPNAVTYTILLLGYGKAGQLSKALEEYERMKKDGIVPDTPF 422
Query: 320 YSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIE 360
YSSL++IL KA R + YNTMIS+AC S+E AL+L +++E
Sbjct: 423 YSSLMYILGKAGRLKDACEVFDDMPKQGVVRDVVTYNTMISTACAHSKEETALRLLKEME 482
Query: 361 EDSCKPDCET----------------------HARSLKMCCHKKRM--------KDGMLV 390
E SCKPD +T H +C + G LV
Sbjct: 483 ETSCKPDLQTYHPLLKMCCKKKRMKVLKFLLDHMFKHDLCPDRGTYTLLVQSLSNSGKLV 542
Query: 391 --LNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
EM+SKG P E+T K+L +LE KS+ K++I+EL+
Sbjct: 543 EACTFFEEMVSKGFTPMETTVKLLTRKLEIKSMLKEKDQIEELMA 587
>gi|224107981|ref|XP_002314676.1| predicted protein [Populus trichocarpa]
gi|222863716|gb|EEF00847.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 189/480 (39%), Positives = 257/480 (53%), Gaps = 101/480 (21%)
Query: 58 FVIPSLASWVESLKLNEQSRISSHAL-SEDHETDVDKVSEILRKRYPSPDKVVEAL---- 112
FVIPS A+ + + I+S +L SE ++D KV EIL+K Y S D VVEAL
Sbjct: 73 FVIPSHANCDKYPNIESHKNIASLSLLSEASDSDAHKVGEILKKHYLSEDAVVEALNESG 132
Query: 113 ------------KCF---------CFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWE 151
K F F WAK QTGY+H PE YN+M++ LGKS+KF LMW+
Sbjct: 133 ISATHDLVSQLLKRFSNQWLIALGVFIWAKNQTGYVHKPEIYNSMIDILGKSRKFSLMWD 192
Query: 152 LVKEIDELSNGYVSLAAMSTVMRRL-----------------------DTRAMSVLMDTL 188
LV+E+ L NGYVSL M VM+RL T AM+VLMD L
Sbjct: 193 LVQEMSGL-NGYVSLVTMGKVMKRLVRDGKYNEAIDAFRGLEKFGLSKSTEAMNVLMDIL 251
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
+ V A V L+F+ C++L + +++L G+CK R A+K M+EM + GF P+ V
Sbjct: 252 ARNGRVEDARAVALEFEGCLTLDYRSYNILSSGYCKARMFGDARKTMEEMEERGFHPNVV 311
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
SYT FIE Y +KDFR V+ L EMQEKGC P +IT T+ + AL KA+QI +AL++ E++
Sbjct: 312 SYTAFIEAYGEQKDFRNVEIILNEMQEKGCPPDLITYTVYIRALGKARQINKALEICEEI 371
Query: 309 KSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRSEE 349
K + + T FY SLI L + R +Y MIS+AC S++
Sbjct: 372 KRNGFVLGTQFYCSLIHSLCLSGRLKDAWNIFEDVEKQGVGRDLGMYKAMISAACALSQD 431
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM--------------- 394
+ALKL K+EEDSCKPD +T+A LKMCC KK MK +LN M
Sbjct: 432 ESALKLLHKMEEDSCKPDVQTYAPLLKMCCRKKSMKMLKFLLNHMFENDVSIDIVTYDLL 491
Query: 395 -----------------REMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATE 437
+E + KG+VP + T+K+L EELE+K++ K +I++L+ A E
Sbjct: 492 VHGLRKQGKLKYACFFFQEAVLKGMVPCDKTYKILLEELERKNMAEMKGKIEKLMLRAKE 551
>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 549
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 187/505 (37%), Positives = 260/505 (51%), Gaps = 117/505 (23%)
Query: 42 LPSWLKFF--DTQSPDED----FVIPSLASWVE-------SLKLNEQSRISSHALSEDHE 88
LP W + D S DED FV+P ++ VE S L+ + +SH +E E
Sbjct: 35 LPEWFRNPKKDGDSFDEDDHDEFVLPIKSNPVEERSHGGGSKPLSIRPEAASHEEAE-FE 93
Query: 89 TDVDKVSEILRKRYPSPDKVVEALKCFC--------------------------FTWAKT 122
D D+ S IL + SP+ +V A+ C C F WA
Sbjct: 94 ADFDEASRILTSCFASPEAIVIAMDC-CPVRVSDRMVDKILRRFGSDWVAAFGFFMWAGA 152
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL------ 176
Q GY H+ ++YN+MV+ LGK K+F LMW L+ ++DE+ G VSLA M+ VMRRL
Sbjct: 153 QEGYRHSADSYNSMVDILGKFKQFDLMWGLISQMDEI-GGLVSLATMTKVMRRLAGASRW 211
Query: 177 -----------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLI 219
DT AM+VL+DTL K SV A F + + + F+ L+
Sbjct: 212 TDAIDAFNKMDQFGVVKDTTAMNVLLDTLCKERSVKRARGAFQELRGSVPPDESSFNTLV 271
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
HGWCK R + A+ MKEM +HGF P ++YT IE YC EKDF+ V L EM+ KGC
Sbjct: 272 HGWCKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCP 331
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------ 333
P+VIT TIVMHAL KA + EAL +++K++ D C D SFY+SLI+IL +A R
Sbjct: 332 PNVITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDANSV 391
Query: 334 -------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
+NT+IS+AC S+ NALK+ K+EE SCKPD +T+ LK+CC
Sbjct: 392 VDKMRMTGVRPTVATFNTLISAACDHSQAENALKMLVKMEEQSCKPDIKTYTPLLKLCCK 451
Query: 381 KKRMKD--------------------GMLVLNLMR------------EMLSKGIVPQEST 408
++ +K +LV L R EM+ KG P++ T
Sbjct: 452 RQWIKVLRFLICHMFRKDITPDFSTYTLLVTWLCRNGKPAQSCLFLEEMVLKGFAPKKET 511
Query: 409 HKMLAEELEKKSLGNAKERIDELLT 433
++AE+L+K +L +AK++I +LLT
Sbjct: 512 FDLVAEKLDKANLHSAKKKI-QLLT 535
>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Brachypodium distachyon]
Length = 570
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 171/458 (37%), Positives = 240/458 (52%), Gaps = 103/458 (22%)
Query: 79 SSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFC---------------------- 116
+SH +E E D+D+VS IL + SP+ +V A+ C C
Sbjct: 85 ASHEEAE-FEADIDEVSRILSSHFASPEAIVIAMDC-CPVRVSGRMVDKILRRFGSDWVA 142
Query: 117 ----FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
F WA Q GY H + YN MV+ LGK K+F L+W L++++DE+ VSLA M+ V
Sbjct: 143 AFGFFMWAGAQEGYCHHADLYNLMVDILGKFKQFDLLWGLIRQMDEIGC-LVSLATMTKV 201
Query: 173 MRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209
MRRL DT+AM+ L+DTL K SV A VF + + +
Sbjct: 202 MRRLAGANRWTDAIDAFNKMDQFGVVRDTKAMNALLDTLCKEKSVKRARGVFQELRGVVP 261
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
F+ L+HGWC+ R + A+ MKEM +HGFSP ++YT IE YC EKDF+ V
Sbjct: 262 PDESSFNTLVHGWCQARMLNEARDTMKEMEEHGFSPSVITYTSLIEAYCMEKDFQTVYAI 321
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
L EM KGC+P+VIT TIVMHAL KA + EAL V++K+K D C+ D SFY+S+I+IL +
Sbjct: 322 LNEMCSKGCRPNVITYTIVMHALGKAGRTQEALDVFDKVKRDGCVPDASFYNSIIYILGR 381
Query: 330 AVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
A R I+NTMIS+AC S+ NALK+ K+EE SCKPD +T
Sbjct: 382 AGRLEDANSVFDEMCRTGIPPTVAIFNTMISAACDHSQAENALKILVKMEEQSCKPDIKT 441
Query: 371 HARSLKMCCHKKRMKD-GMLVLNLMR-------------------------------EML 398
+ LK+CC ++ MK L+ ++ R EM+
Sbjct: 442 YTPLLKLCCKRQWMKILPFLICHMFRKDISPDFSTYILLVTWLCRNGKPAQSCLFLEEMV 501
Query: 399 SKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436
KG +P++ T ++ E+L+K +L +AK++I L A
Sbjct: 502 LKGFMPKQETFDLVMEKLDKGNLHSAKKKIQHLKLRAA 539
>gi|308082018|ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays]
gi|238014984|gb|ACR38527.1| unknown [Zea mays]
gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein ZEAMMB73_971718 [Zea mays]
Length = 623
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 177/457 (38%), Positives = 235/457 (51%), Gaps = 91/457 (19%)
Query: 42 LPSWLKFFDTQSP--------DEDFVIPSLASWVESLKLNEQSRISSH--------ALSE 85
LP W + P D+DFV+P+ + + E + SS A E
Sbjct: 66 LPDWFRNPKDGYPCSRLDGNGDDDFVLPAKSDFSEQQGCSATGGGSSPLSILASCPASHE 125
Query: 86 D--HETDVDKVSEILRKRYPSPDKVVEALKCFC--------------------------F 117
D E D+D+VS ILR R+ SP+ +V + C C F
Sbjct: 126 DAEFEADMDEVSRILRSRFASPEAIVITMDC-CPVRVSARLVSKVLSRFSNDWVAAFGFF 184
Query: 118 TWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL- 176
WA TQ GY H ++Y+ MV+ LGK K+F LM L+ ++ E+ G VSLA M+ VMRRL
Sbjct: 185 MWAGTQEGYCHCADSYDMMVDILGKFKQFDLMCGLIGQMHEI-GGLVSLATMTKVMRRLC 243
Query: 177 ----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
DT+AM+VL+DTL K SV A F K I
Sbjct: 244 GANRWSDAIDAFHKMDRFGVAKDTKAMNVLLDTLCKERSVKRARGAFQALKGTIPPDESS 303
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ L+HGWCK R A++ MKEM +HGFSP +YTC IE YC EKDF+ VD L EM
Sbjct: 304 FNTLVHGWCKARMLKEARETMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMH 363
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
KGC P++IT TIVMHAL KA + EAL ++K+K D C D SFY+ LI+IL +A R
Sbjct: 364 TKGCTPNIITYTIVMHALGKAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQ 423
Query: 333 ---FLI--------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
F++ +NT+IS+AC S NALKL ++EE SC PD +T+ L
Sbjct: 424 DANFVVEEMHRTGISPNLTTFNTLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLL 483
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
K+CC +K +K +L L+ M K I P ST+ +L
Sbjct: 484 KLCCRRKWVK---TLLFLICHMFRKDITPDFSTYTLL 517
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/316 (19%), Positives = 114/316 (36%), Gaps = 68/316 (21%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G+ + TY ++EA K F + +D + L M T + +++
Sbjct: 331 GFSPSVTTYTCLIEAYCMEKDF-------QTVDGI------LDEMHTKGCTPNIITYTIV 377
Query: 185 MDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
M L K A F K K D +L + ++ LI+ C+ + A ++EM + G
Sbjct: 378 MHALGKAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDANFVVEEMHRTGI 437
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
SP+ ++ I C L +M+E+ C P + T T ++ + K + L
Sbjct: 438 SPNLTTFNTLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCCRRKWVKTLLF 497
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS 363
+ M D D S Y+ L+ L + N ++ +C+
Sbjct: 498 LICHMFRKDITPDFSTYTLLVCWLCR-------NGRLTQSCL------------------ 532
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGN 423
+ EM+ KG PQ++T ++ E+L+ + +
Sbjct: 533 -----------------------------FLEEMVLKGFTPQQATFDLVLEKLKNMHMLS 563
Query: 424 AKERIDELLTHATEQR 439
A +I L H R
Sbjct: 564 AVRKIQLLRMHTEGTR 579
>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
Length = 1874
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 165/457 (36%), Positives = 234/457 (51%), Gaps = 101/457 (22%)
Query: 79 SSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFC---------------------- 116
+SH +E E D+D+VS IL R+ SP+ ++ A+ C
Sbjct: 1411 ASHEDAE-FEADIDEVSRILSARFASPEAIMIAMDCCSVRVTGCLVDKILTRFSNDWVAA 1469
Query: 117 ---FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM 173
F W TQ GY H ++Y+ MV+ LGK K+F LMW L+ ++ E+ G +SL M+ VM
Sbjct: 1470 FGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVG-GLMSLMTMTKVM 1528
Query: 174 RRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL 210
RRL DT+AM+VL+DTL K SV A VF + + I
Sbjct: 1529 RRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPP 1588
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
F+ L+HGWCK R A M+EM QHGFSP V+YT +E YC EKDF+ V L
Sbjct: 1589 DENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALL 1648
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
EM+++ C P+V+T TI+MHAL KA + EAL ++K+K D D SFY+SLI+IL +A
Sbjct: 1649 DEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRA 1708
Query: 331 VRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
R +NT+IS+AC S+ NALKL K+EE SC PD +T+
Sbjct: 1709 GRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTY 1768
Query: 372 ARSLKMCCHKKRMKDGM-LVLNLMR-------------------------------EMLS 399
LK+CC ++ +K + LV ++ R EM+S
Sbjct: 1769 TPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVS 1828
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436
KG P++ T ++ E+LEK++L + ++I L T T
Sbjct: 1829 KGFAPKQETFDLVMEKLEKRNLQSVYKKIQVLRTQVT 1865
>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1833
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 165/457 (36%), Positives = 234/457 (51%), Gaps = 101/457 (22%)
Query: 79 SSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFC---------------------- 116
+SH +E E D+D+VS IL R+ SP+ ++ A+ C
Sbjct: 1370 ASHEDAE-FEADIDEVSRILSARFASPEAIMIAMDCCSVRVTGCLVDKILTRFSNDWVAA 1428
Query: 117 ---FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM 173
F W TQ GY H ++Y+ MV+ LGK K+F LMW L+ ++ E+ G +SL M+ VM
Sbjct: 1429 FGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVG-GLMSLMTMTKVM 1487
Query: 174 RRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL 210
RRL DT+AM+VL+DTL K SV A VF + + I
Sbjct: 1488 RRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIPP 1547
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
F+ L+HGWCK R A M+EM QHGFSP V+YT +E YC EKDF+ V L
Sbjct: 1548 DENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALL 1607
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
EM+++ C P+V+T TI+MHAL KA + EAL ++K+K D D SFY+SLI+IL +A
Sbjct: 1608 DEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRA 1667
Query: 331 VRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
R +NT+IS+AC S+ NALKL K+EE SC PD +T+
Sbjct: 1668 GRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTY 1727
Query: 372 ARSLKMCCHKKRMKDGM-LVLNLMR-------------------------------EMLS 399
LK+CC ++ +K + LV ++ R EM+S
Sbjct: 1728 TPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVS 1787
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436
KG P++ T ++ E+LEK++L + ++I L T T
Sbjct: 1788 KGFAPKQETFDLVMEKLEKRNLQSVYKKIQVLRTQVT 1824
>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
Length = 554
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 166/458 (36%), Positives = 235/458 (51%), Gaps = 103/458 (22%)
Query: 79 SSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFC---------------------- 116
+SH +E E D+D+VS IL R+ SP+ ++ A+ C C
Sbjct: 91 ASHEDAE-FEADIDEVSRILSARFASPEAIMIAMDC-CSVRVTGCLVDKILTRFSNDWVA 148
Query: 117 ----FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
F W TQ GY H ++Y+ MV+ LGK K+F LMW L+ ++ E+ G +SL M+ V
Sbjct: 149 AFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEV-GGLMSLMTMTKV 207
Query: 173 MRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209
MRRL DT+AM+VL+DTL K SV A VF + + I
Sbjct: 208 MRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIP 267
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
F+ L+HGWCK R A M+EM QHGFSP V+YT +E YC EKDF+ V
Sbjct: 268 PDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYAL 327
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
L EM+++ C P+V+T TI+MHAL KA + EAL ++K+K D D SFY+SLI+IL +
Sbjct: 328 LDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGR 387
Query: 330 AVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
A R +NT+IS+AC S+ NALKL K+EE SC PD +T
Sbjct: 388 AGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKT 447
Query: 371 HARSLKMCCHKKRMKDGM-LVLNLMR-------------------------------EML 398
+ LK+CC ++ +K + LV ++ R EM+
Sbjct: 448 YTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMV 507
Query: 399 SKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436
SKG P++ T ++ E+LEK++L + ++I L T T
Sbjct: 508 SKGFAPKQETFDLVMEKLEKRNLQSVYKKIQVLRTQVT 545
>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
Length = 613
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 166/458 (36%), Positives = 235/458 (51%), Gaps = 103/458 (22%)
Query: 79 SSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFC---------------------- 116
+SH +E E D+D+VS IL R+ SP+ ++ A+ C C
Sbjct: 150 ASHEDAE-FEADIDEVSRILSARFASPEAIMIAMDC-CSVRVTGCLVDKILTRFSNDWVA 207
Query: 117 ----FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
F W TQ GY H ++Y+ MV+ LGK K+F LMW L+ ++ E+ G +SL M+ V
Sbjct: 208 AFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEV-GGLMSLMTMTKV 266
Query: 173 MRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209
MRRL DT+AM+VL+DTL K SV A VF + + I
Sbjct: 267 MRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGTIP 326
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
F+ L+HGWCK R A M+EM QHGFSP V+YT +E YC EKDF+ V
Sbjct: 327 PDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYAL 386
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
L EM+++ C P+V+T TI+MHAL KA + EAL ++K+K D D SFY+SLI+IL +
Sbjct: 387 LDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGR 446
Query: 330 AVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
A R +NT+IS+AC S+ NALKL K+EE SC PD +T
Sbjct: 447 AGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKT 506
Query: 371 HARSLKMCCHKKRMKDGM-LVLNLMR-------------------------------EML 398
+ LK+CC ++ +K + LV ++ R EM+
Sbjct: 507 YTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMV 566
Query: 399 SKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436
SKG P++ T ++ E+LEK++L + ++I L T T
Sbjct: 567 SKGFAPKQETFDLVMEKLEKRNLQSVYKKIQVLRTQVT 604
>gi|225425882|ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial [Vitis vinifera]
Length = 496
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 129/393 (32%), Positives = 199/393 (50%), Gaps = 79/393 (20%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA+++ GY H PE Y+ MV+ LGK K+ M L++E+ + V L+ ++ MRRL
Sbjct: 99 FRWAESRLGYEHAPEAYDMMVDILGKLKQVDKMRALMEEMRQ--GNLVRLSTVAKAMRRL 156
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+T +M++L+DTL K V A +FL+ K IS ++
Sbjct: 157 AGAGEWEDAVRVFDDLGNFELEKNTESMNLLLDTLCKERKVEQARAIFLELKPHISPNTH 216
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F++ IHGWCK + D A+ ++EM HG P +SY+ I+ YCR+ +FRKV L +M
Sbjct: 217 TFNIFIHGWCKANRVDEAEWTIQEMKGHGCRPCVISYSTIIQSYCRQSNFRKVYELLDDM 276
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK---- 329
Q +GC P+V+T T +M +L K +Q EAL++ E+M+S C DT FY++LI L +
Sbjct: 277 QAQGCAPNVVTYTTIMCSLTKVEQFEEALQIAERMRSVGCKPDTLFYNALIHTLGRAGQL 336
Query: 330 --AVRFL--------------IYNTMISSACVRSEEGNALKLRQKIEEDS-CKPDCETHA 372
AVR YN+MI+ C S+E AL L ++IE + CKPD +T+
Sbjct: 337 REAVRVFEVEMPKTGVPPNTSTYNSMIAMFCHHSQEQKALNLLREIENSTFCKPDIQTYY 396
Query: 373 RSLKMCCHKKRMK------DGML---------------------------VLNLMREMLS 399
LK C ++ D M+ NL EM+
Sbjct: 397 PVLKSCFKTGKIDSLSNFLDDMVNKHHLSLDVSAYTLLIHGLCRANKCEWGYNLFEEMVG 456
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
K I P+ T +L +E+++K++ +A ERI+ +
Sbjct: 457 KAITPRYKTCALLLDEIKQKNMHDAAERIEVFM 489
>gi|356560497|ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Glycine max]
Length = 490
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 133/433 (30%), Positives = 215/433 (49%), Gaps = 86/433 (19%)
Query: 81 HALSEDHETDVDKVSEILRKR--YPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVE 138
H L D D +S L R + D AL F WA ++ + H+ E+Y+ MV+
Sbjct: 60 HTLFNDQACDFIPLSRDLVHRLLWRYKDDWKSALGVF--RWASSRPSFRHSSESYDMMVD 117
Query: 139 ALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL---------------------- 176
LG+ K + +L++E+ E G V++ ++ MRR
Sbjct: 118 ILGRMKVMEKLRDLLEEMRE--GGLVNMNTVAKAMRRFVGAGQWVDAVRIFDDLQALGLE 175
Query: 177 -DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+T +M++L+DTL K V A ++FL+ K I+ ++ F++ IHGWCK + D A +
Sbjct: 176 KNTESMNLLLDTLCKEKFVQQAREIFLELKQHIAPNAHTFNIFIHGWCKICRVDEAHWTI 235
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM +GF P +SY+ I+ YC+E +F +V L EMQ +GC +VIT T +M AL KA
Sbjct: 236 QEMKGYGFHPCVISYSTLIQCYCQEGNFSRVYELLDEMQAQGCSANVITYTSIMCALGKA 295
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--------------------LI 335
K+ EALKV E+M+S C DT F++SLI L +A R
Sbjct: 296 KKFEEALKVPERMRSSGCRPDTLFFNSLIHTLGRAGRLDDAADVFKVEMPKAGVSPNTST 355
Query: 336 YNTMISSACVRSEEGNALKLRQKIEE-DSCKPDCETHARSLKMCCHKKRMKDGML--VLN 392
YN+MIS C ++E AL++ +++E CKPD +T+ +K C ++ DG+L +LN
Sbjct: 356 YNSMISMFCYHAQEKRALEILKEMENSGGCKPDAQTYHPLIKSCFRSGKI-DGVLSEILN 414
Query: 393 ---------------------------------LMREMLSKGIVPQESTHKMLAEELEKK 419
L EM+ + I+P+ T ++L +E+++K
Sbjct: 415 DMINKQHLSLDLSTYTLLIHGLCREDRCNWAFSLFEEMIDQDIIPRYRTCRLLLDEVKQK 474
Query: 420 SLGNAKERIDELL 432
++ A E+I++L+
Sbjct: 475 NMYQAAEKIEDLM 487
>gi|224110770|ref|XP_002315631.1| predicted protein [Populus trichocarpa]
gi|222864671|gb|EEF01802.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 186/393 (47%), Gaps = 79/393 (20%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA + GY H PE Y+ MV+ LGK K+ M EL++E++ N V+L + MRR
Sbjct: 61 FRWAGLRPGYKHRPEAYDMMVDILGKMKQMDQMRELLEEMNR--NHLVTLNTVGKAMRRF 118
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+ +M++L+DTL K V A +FL+ K I ++
Sbjct: 119 SGAGKWEDAVRMFDELGTFGLEKNAESMNLLLDTLCKEGKVEQARAIFLELKSHILPNAH 178
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F++ IHGWCK D A ++EM H F P +SY+ I YCR+ +F KV L EM
Sbjct: 179 TFNIFIHGWCKANLVDEAHWTLQEMKGHAFRPCVISYSTIILFYCRQHNFSKVYELLDEM 238
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+ +GC P+V+T T ++ L K++ EAL++ ++MKS C DT F++SLI+IL +A RF
Sbjct: 239 EAQGCPPNVVTYTTIIVFLAKSQNTEEALQLTQRMKSAGCKPDTPFFNSLIYILGRAGRF 298
Query: 334 L--------------------IYNTMISSACVRSEEGNALKLRQKIEEDS-CKPDCETHA 372
YN+MI+ C AL L +++E + K D +T
Sbjct: 299 QEAVDVFEKEMPNAGVSRDTSTYNSMIAMLCHHGHVSKALSLLREMETSAPFKLDGQTFY 358
Query: 373 RSLKMCCHKKRMK------DGML---------------------------VLNLMREMLS 399
LK C M D M+ +L EM+S
Sbjct: 359 PLLKSCLRTGDMNLLSQLLDDMVKKHQLSLDRSAYALLIHGLCRANKCQWAYHLFEEMIS 418
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
K IVP+ T ML EE++ KS+ + E+I++ +
Sbjct: 419 KDIVPKYQTCHMLLEEVKLKSMYDTAEKIEDFM 451
>gi|125540181|gb|EAY86576.1| hypothetical protein OsI_07956 [Oryza sativa Indica Group]
gi|125582780|gb|EAZ23711.1| hypothetical protein OsJ_07414 [Oryza sativa Japonica Group]
gi|215768726|dbj|BAH00955.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 500
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 183/394 (46%), Gaps = 79/394 (20%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA+++ Y HT N MV+ LGK ++ MWEL+ ++ G V++ ++ +RRL
Sbjct: 103 FQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQMWELLSDMH--GRGLVTVETVAKSIRRL 160
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+T M+VL+D L K + A +VF I +
Sbjct: 161 AGARRWKDVVLLFDKLEDMGLERNTETMNVLLDVLCKERKIEVAREVFAVLSPHIPPDAY 220
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F++ +HGWC R+ D A ++EM + GF P ++YT +E YC++++FR+V L M
Sbjct: 221 TFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSM 280
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+GC P+VIT T++M +L K ++ EAL V +MKS C DT FY+SLI +L K+
Sbjct: 281 GSQGCHPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHL 340
Query: 334 L--------------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
YNTMIS C + +AL + +++E SCKPD +++
Sbjct: 341 FEASQVFRVEMPMNGVSHNLATYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRP 400
Query: 374 SLKMCCHKK----------------------------------RMKDGMLVLNLMREMLS 399
L++ ++ R+ D + L EM+S
Sbjct: 401 LLRLFLSRRGQADTVRHLLSELTSKHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEMVS 460
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
I P+ T ML +E ++ ++ ERI ++
Sbjct: 461 SEIAPRSKTCVMLLDEAQRTNMETYVERIGNYMS 494
>gi|297599556|ref|NP_001047351.2| Os02g0601600 [Oryza sativa Japonica Group]
gi|255671066|dbj|BAF09265.2| Os02g0601600 [Oryza sativa Japonica Group]
Length = 466
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 183/394 (46%), Gaps = 79/394 (20%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA+++ Y HT N MV+ LGK ++ MWEL+ ++ G V++ ++ +RRL
Sbjct: 69 FQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQMWELLSDMH--GRGLVTVETVAKSIRRL 126
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+T M+VL+D L K + A +VF I +
Sbjct: 127 AGARRWKDVVLLFDKLEDMGLERNTETMNVLLDVLCKERKIEVAREVFAVLSPHIPPDAY 186
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F++ +HGWC R+ D A ++EM + GF P ++YT +E YC++++FR+V L M
Sbjct: 187 TFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSM 246
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+GC P+VIT T++M +L K ++ EAL V +MKS C DT FY+SLI +L K+
Sbjct: 247 GSQGCHPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHL 306
Query: 334 L--------------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
YNTMIS C + +AL + +++E SCKPD +++
Sbjct: 307 FEASQVFRVEMPMNGVSHNLATYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRP 366
Query: 374 SLKMCCHKK----------------------------------RMKDGMLVLNLMREMLS 399
L++ ++ R+ D + L EM+S
Sbjct: 367 LLRLFLSRRGQADTVRHLLSELTSKHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEMVS 426
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
I P+ T ML +E ++ ++ ERI ++
Sbjct: 427 SEIAPRSKTCVMLLDEAQRTNMETYVERIGNYMS 460
>gi|47848296|dbj|BAD22160.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 454
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 183/394 (46%), Gaps = 79/394 (20%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA+++ Y HT N MV+ LGK ++ MWEL+ ++ G V++ ++ +RRL
Sbjct: 57 FQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQMWELLSDMH--GRGLVTVETVAKSIRRL 114
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+T M+VL+D L K + A +VF I +
Sbjct: 115 AGARRWKDVVLLFDKLEDMGLERNTETMNVLLDVLCKERKIEVAREVFAVLSPHIPPDAY 174
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F++ +HGWC R+ D A ++EM + GF P ++YT +E YC++++FR+V L M
Sbjct: 175 TFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSM 234
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+GC P+VIT T++M +L K ++ EAL V +MKS C DT FY+SLI +L K+
Sbjct: 235 GSQGCHPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHL 294
Query: 334 L--------------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
YNTMIS C + +AL + +++E SCKPD +++
Sbjct: 295 FEASQVFRVEMPMNGVSHNLATYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRP 354
Query: 374 SLKMCCHKK----------------------------------RMKDGMLVLNLMREMLS 399
L++ ++ R+ D + L EM+S
Sbjct: 355 LLRLFLSRRGQADTVRHLLSELTSKHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEMVS 414
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
I P+ T ML +E ++ ++ ERI ++
Sbjct: 415 SEIAPRSKTCVMLLDEAQRTNMETYVERIGNYMS 448
>gi|357142780|ref|XP_003572691.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Brachypodium distachyon]
Length = 501
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 164/327 (50%), Gaps = 47/327 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA++ Y HT + M++ LGK ++ MW+L+ ++ G V++ A +T +RRL
Sbjct: 104 FQWAQSSGNYKHTAYACSRMIDLLGKMRQIDQMWDLLSDMH--CRGLVTVEAAATSIRRL 161
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+T M+VL+D L K V A KVFL I +
Sbjct: 162 AGARRWKDAVLLFDKLGDMGLERNTETMNVLLDALCKEKKVEVARKVFLVLSPHIQPDAY 221
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F++ +HGWC R+ D A ++EM GF P ++YT +E YC++ +FR V L M
Sbjct: 222 TFNIFVHGWCSARRIDEAMWTIEEMKAQGFPPSVITYTTVLEAYCKQHNFRMVYEILDSM 281
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR- 332
+GC P+VIT T++M +L K EAL V +MKS C DT FY+SLI +L KA
Sbjct: 282 SSEGCHPNVITYTMIMTSLAKCHMFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKAGHL 341
Query: 333 -------------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
YNTMIS C + + +AL + +++E SCKPD +T+
Sbjct: 342 SEASQVFQVEMPMNGVPRSLATYNTMISVFCYKDLDEDALSVLKEMETQSCKPDLQTYRP 401
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSK 400
L++ ++ D V NL+ E+++K
Sbjct: 402 LLRLFLSRRGQDD--TVRNLLNELMNK 426
>gi|255547888|ref|XP_002515001.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546052|gb|EEF47555.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 466
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 124/391 (31%), Positives = 196/391 (50%), Gaps = 80/391 (20%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA+++ GY H+PE Y+ MV+ +GK K+ M L++E+++ +V+L + MRR
Sbjct: 72 FRWAESRAGYKHSPEAYDTMVDIMGKMKQMDQMEFLLEEMEK--GQHVTLKTVGKAMRRF 129
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+T +M++L+DTL K V A ++FL K IS ++
Sbjct: 130 AGARQWENVLRVFDKLGTFGLEKNTESMNLLLDTLCKERKVELAREIFLDLKSHISPNAN 189
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F++ IHGWCK + + A ++EM HG +P +SY+ ++ YC +F KV L EM
Sbjct: 190 TFNIFIHGWCKVNRVEEAYWTIQEMKGHGCTPCVISYSTIVQFYCHRSNFSKVYELLDEM 249
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR- 332
+ +G P+V+T T VM AL K+++ EAL++ ++MKS C DT FY+SLI L KA R
Sbjct: 250 EAQGLIPNVVTYTSVMSALAKSEEYEEALQIAQRMKSVGCKPDTLFYNSLIHTLGKAGRP 309
Query: 333 ------FLI-------------YNTMISSACVRSEEGNALKLRQKIEED-SCKPDCETHA 372
F + YN+MI+ C S+E AL L ++IE CKPD +T+
Sbjct: 310 EEAIQVFEVEMPNTGVPPNTSTYNSMIAMLCHHSQERKALNLLKEIEASIICKPDVQTYY 369
Query: 373 RSLKMCCHK-------KRMKDGM---------------LVLNLMR------------EML 398
LK C ++ D M LV L R EM+
Sbjct: 370 PLLKSCFKAGSIDSLLSQLLDDMVKKHHLSLDFSAYTLLVHGLCRANKCEWAYCLFEEMI 429
Query: 399 SKGIVPQESTHKMLAEELEKKSLGNAKERID 429
K + P+ T ++L +E++ K + +A ++I+
Sbjct: 430 GKDMTPKYQTCRLLLDEVKLKHMYDAAQKIE 460
>gi|413937640|gb|AFW72191.1| hypothetical protein ZEAMMB73_762171 [Zea mays]
Length = 503
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 115/390 (29%), Positives = 192/390 (49%), Gaps = 80/390 (20%)
Query: 117 FTWAKTQTG-YMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR 175
F WA+++ G Y HTP + MV+ LGK+++ MW+L+ E+ G V++ ++ +RR
Sbjct: 105 FLWAQSRGGGYSHTPYACSRMVDLLGKTRQIDRMWDLLSEMH--CRGLVTVDTVAKSIRR 162
Query: 176 L-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS 212
L +T M+VL+D L K V A +VF+ I+ +
Sbjct: 163 LAAARKWRDAILLFDQLEDLGLERNTETMNVLLDALCKEKKVELAREVFVMLSPHIAPDA 222
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
F++ +HGWC R+ D A ++EM GF P ++YT +E YC++++FR+V L
Sbjct: 223 YTFNIFVHGWCSVRRIDEALWTIEEMKTRGFPPIVITYTAVLEAYCKQRNFRRVYEVLDS 282
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M +GC P+VIT T++M +L K ++ EAL V ++MKS C DT FY++LI +L +A
Sbjct: 283 MGSQGCHPNVITYTMIMTSLTKCERFEEALSVSDRMKSSGCKPDTLFYNALINLLGRAGH 342
Query: 333 FL--------------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH- 371
YNTMIS C + +AL + +++E SCKPD +T+
Sbjct: 343 LFEANQVFRVEMPRNGVLRNVATYNTMISILCQYGRDDDALGVLKEMEAQSCKPDLQTYQ 402
Query: 372 ------------ARSLKMCCHKKRMKDGM--------LVLN-------------LMREML 398
A ++ + R ++G+ L+++ L EM+
Sbjct: 403 PLLRLLLGRRGQAAAVHRLLSELRDRNGLGLDLDTYTLLIHGLCKVGETDWAYLLYDEMV 462
Query: 399 SKGIVPQESTHKMLAEELEKKSLGNAKERI 428
IVP+ T ++L E++++++ ERI
Sbjct: 463 GSEIVPRPRTCELLLSEMQRQNMEAYVERI 492
>gi|357440039|ref|XP_003590297.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479345|gb|AES60548.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 661
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 198/393 (50%), Gaps = 82/393 (20%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA + + + H+ ++Y+ MV+ LG+ K M E+++E+ + S ++L ++ VMRR
Sbjct: 107 FRWAGSHSNFKHSQQSYDMMVDILGRMKAMDKMREILEEMRQES--LITLNTIAKVMRRF 164
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+T +M+VL+DTL K V A +++L+ K I+ ++
Sbjct: 165 VGARQWKDAVRIFDDLQFLGLEKNTESMNVLLDTLCKEKFVEQAREIYLELKHYIAPNAH 224
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F++LIHGWC R+ + A ++EM +G P +SY+ I+ YC+E++F +V L EM
Sbjct: 225 TFNILIHGWCNIRRVEEAHWTIQEMKGYGCRPCVISYSTIIQCYCQEQNFDRVYDLLDEM 284
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
Q + C P+V+T T +M AL KA++ EAL+V E+M + C DT F++SLI+ L +A R
Sbjct: 285 QAQNCSPNVVTYTTIMCALAKAEKFEEALQVVERMNAVGCRPDTLFFNSLIYTLGRAGRI 344
Query: 334 --------------------LIYNTMISSACVRSEEGNALKLRQKIEEDS-CKPDCETHA 372
YN+MIS C ++E A + +++E+ CKPD +T+
Sbjct: 345 DDATHVFKVAMPKASVAPNTSTYNSMISMFCYYAQEERAFGILKEMEKSGLCKPDIQTYH 404
Query: 373 RSLKMCCHKKRMKDGML--VLN---------------------------------LMREM 397
+K C K R D L +LN L EM
Sbjct: 405 PLIK-SCFKMREIDTWLNDILNDMVNKYHIGLDLSTYTLLIHGLYRADRCKWAFDLFEEM 463
Query: 398 LSKGIVPQESTHKMLAEELEKKSLGNAKERIDE 430
+ IVP+ T ++L +E+++K++ A +I++
Sbjct: 464 ADQDIVPRYKTCRLLLDEVKQKNMHLAVVKIED 496
>gi|242062226|ref|XP_002452402.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
gi|241932233|gb|EES05378.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
Length = 506
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 190/390 (48%), Gaps = 80/390 (20%)
Query: 117 FTWAKTQTG-YMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR 175
F WA+++ G Y HTP N MV+ LGK ++ MW+L+ E+ G V++ ++ +RR
Sbjct: 108 FLWAQSRGGGYSHTPCACNRMVDLLGKMRQIDRMWDLLSEMH--CRGLVTVDTIAKSIRR 165
Query: 176 L-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS 212
L +T M+VL+D L K V A +VF+ I+ +
Sbjct: 166 LAAARRWRDAILLFDQLEDLGLERNTETMNVLLDALCKERKVELAREVFVMLSPHIAPDA 225
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
F++ +HGWC R+ D A ++EM GF P ++YT +E YC++++FR+V L
Sbjct: 226 YTFNIFVHGWCSVRRIDEAMWTIEEMKNRGFPPIVITYTAVLEAYCKQRNFRRVYEILDS 285
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M +GC P+VIT T++M +L K ++ EAL V ++MKS C DT FY++LI +L +A
Sbjct: 286 MSSQGCHPNVITYTMIMTSLTKCERFEEALSVSDRMKSSGCKPDTLFYNALINLLGRAGH 345
Query: 333 FL--------------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
YNTMIS C + +AL + +++E SCKPD +T+
Sbjct: 346 LFEANQVFRVEMPRNVVPRNVATYNTMISILCQYGRDDDALDVLKEMEAQSCKPDLQTYQ 405
Query: 373 RSLKMCCHKK-------------RMKDG---------MLVLNLMR------------EML 398
L++ ++ R ++G +L+ L R EM+
Sbjct: 406 PLLRLLFGRRGQTGAIHHLLSELRDRNGLGLDLDTYTLLIHGLCRVGETDWAYQLYDEMV 465
Query: 399 SKGIVPQESTHKMLAEELEKKSLGNAKERI 428
IVP+ T ++L E +++++ ERI
Sbjct: 466 GSEIVPRPKTCELLLSETQRQNMEVYVERI 495
>gi|449435037|ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Cucumis sativus]
Length = 519
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 116/394 (29%), Positives = 195/394 (49%), Gaps = 80/394 (20%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA++ +G+ HTP+ Y+ +++ LGK+K+ M +++E+ E V+L ++ MRR
Sbjct: 125 FRWAESLSGFKHTPDLYDILIDTLGKTKQLVKMRGMLEEMKEAR--LVTLDTVAKAMRRF 182
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+T +M+VL+DTL K V A +++L+ K I+ ++
Sbjct: 183 AGAGQWENAVRIFDDLETYGLEKNTESMNVLLDTLCKEKKVEKARQMYLELKSHIAPNAN 242
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F++ IHGWCK K D A ++EM +G P +SY+ I YC +F KV L EM
Sbjct: 243 TFNMFIHGWCKVNKIDEAHWTLEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEM 302
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA--V 331
+GC +VIT T +M +L K+++ EAL++ E+MKS DT FY+ LI L +A V
Sbjct: 303 DAQGCPANVITYTTIMCSLTKSEEFEEALQIAERMKSAGYEPDTLFYNCLIHTLGRAGKV 362
Query: 332 RFLI------------------YNTMISSACVRSEEGNALKLRQKIEE-DSCKPDCETHA 372
R I YN+MI+ C R+ E A+KL +++++ + CKPD +T+
Sbjct: 363 REAIHVFEVEMPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLLEEMQKSEHCKPDVQTYY 422
Query: 373 RSLKMCCHKKR-------MKDGML---------------------------VLNLMREML 398
LK C + + D M+ L +M+
Sbjct: 423 PLLKSCFRTGKTDYDLSNLLDEMINKHHLSLDISTYSLLIHGLCRANKCDWAYQLFEKMI 482
Query: 399 SKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
S+ I P+ T ++L +E ++K++ +RI+ ++
Sbjct: 483 SQDIKPRYLTCQLLLDEFKQKNMDGVADRIEGIM 516
>gi|449494995|ref|XP_004159705.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Cucumis sativus]
Length = 488
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 116/394 (29%), Positives = 195/394 (49%), Gaps = 80/394 (20%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA++ +G+ HTP+ Y+ +++ LGK+K+ M +++E+ E V+L ++ MRR
Sbjct: 94 FRWAESLSGFKHTPDLYDILIDTLGKTKQLVKMRGMLEEMKEAR--LVTLDTVAKAMRRF 151
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+T +M+VL+DTL K V A +++L+ K I+ ++
Sbjct: 152 AGAGQWENAVRIFDDLETYGLEKNTESMNVLLDTLCKEKKVEKARQMYLELKSHIAPNAN 211
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F++ IHGWCK K D A ++EM +G P +SY+ I YC +F KV L EM
Sbjct: 212 TFNMFIHGWCKVNKIDEAHWTLEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEM 271
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA--V 331
+GC +VIT T +M +L K+++ EAL++ E+MKS DT FY+ LI L +A V
Sbjct: 272 DAQGCPANVITYTTIMCSLTKSEEFEEALQIAERMKSAGYEPDTLFYNCLIHTLGRAGKV 331
Query: 332 RFLI------------------YNTMISSACVRSEEGNALKLRQKIEE-DSCKPDCETHA 372
R I YN+MI+ C R+ E A+KL +++++ + CKPD +T+
Sbjct: 332 REAIHVFEVEMPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLLEEMQKSEHCKPDVQTYY 391
Query: 373 RSLKMCCHKKR-------MKDGML---------------------------VLNLMREML 398
LK C + + D M+ L +M+
Sbjct: 392 PLLKSCFRTGKTDYDLSNLLDEMINKHHLSLDISTYSLLIHGLCRANKCDWAYQLFEKMI 451
Query: 399 SKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
S+ I P+ T ++L +E ++K++ +RI+ ++
Sbjct: 452 SQDIKPRYLTCQLLLDEFKQKNMDGVADRIEGIM 485
>gi|6721172|gb|AAF26800.1|AC016829_24 hypothetical protein [Arabidopsis thaliana]
Length = 572
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 188/393 (47%), Gaps = 83/393 (21%)
Query: 119 WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG--YVSLAAMSTVMRRL 176
WA++ G+ H+ + Y+ V+ LGK+KK W+ +KE E G V+L ++ +MRR
Sbjct: 174 WAESCKGHKHSSDAYDMAVDILGKAKK----WDRMKEFVERMRGDKLVTLNTVAKIMRRF 229
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+T +M++L+DTL K V A V L+ K I+ ++
Sbjct: 230 AGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAH 289
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F++ IHGWCK + + A ++EM HGF P +SYT I YC++ +F KV L EM
Sbjct: 290 TFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEM 349
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+ G P+ IT T +M +L K+ EAL+V +MK C D+ FY+ LI L++A R
Sbjct: 350 EANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRL 409
Query: 334 --------------------LIYNTMISSACVRSEEGNALKLRQKIEEDS-CKPDCETHA 372
YN+MI+ C EE A++L +++E + C PD T+
Sbjct: 410 EEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQ 469
Query: 373 RSLKMCCHK-------KRMKD--------------GMLVLNLMR------------EMLS 399
L+ C + K +K+ L+ L R EM+S
Sbjct: 470 PLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMIS 529
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
+ I P+ T +L EE++KK++ + ERI+ ++
Sbjct: 530 QDITPRHRTCLLLLEEVKKKNMHESAERIEHIM 562
>gi|18396782|ref|NP_566222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|79312733|ref|NP_001030630.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546763|sp|Q9M8W9.2|PP211_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04130, mitochondrial; Flags: Precursor
gi|332640519|gb|AEE74040.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332640520|gb|AEE74041.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 508
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 188/391 (48%), Gaps = 79/391 (20%)
Query: 119 WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-- 176
WA++ G+ H+ + Y+ V+ LGK+KK+ M E V+ + + V+L ++ +MRR
Sbjct: 110 WAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMR--GDKLVTLNTVAKIMRRFAG 167
Query: 177 ---------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF 215
+T +M++L+DTL K V A V L+ K I+ ++ F
Sbjct: 168 AGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTF 227
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
++ IHGWCK + + A ++EM HGF P +SYT I YC++ +F KV L EM+
Sbjct: 228 NIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEA 287
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-- 333
G P+ IT T +M +L K+ EAL+V +MK C D+ FY+ LI L++A R
Sbjct: 288 NGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEE 347
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDS-CKPDCETHARS 374
YN+MI+ C EE A++L +++E + C PD T+
Sbjct: 348 AERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPL 407
Query: 375 LKMCCHK-------KRMKD--------------GMLVLNLMR------------EMLSKG 401
L+ C + K +K+ L+ L R EM+S+
Sbjct: 408 LRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQD 467
Query: 402 IVPQESTHKMLAEELEKKSLGNAKERIDELL 432
I P+ T +L EE++KK++ + ERI+ ++
Sbjct: 468 ITPRHRTCLLLLEEVKKKNMHESAERIEHIM 498
>gi|222423065|dbj|BAH19514.1| AT3G04130 [Arabidopsis thaliana]
Length = 508
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 188/391 (48%), Gaps = 79/391 (20%)
Query: 119 WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-- 176
WA++ G+ H+ + Y+ V+ LGK+KK+ M E V+ + + V+L ++ +MRR
Sbjct: 110 WAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMR--GDKLVTLNTVAKIMRRFAG 167
Query: 177 ---------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF 215
+T +M++L+DTL K V A V L+ K I+ ++ F
Sbjct: 168 AGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTF 227
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
++ IHGWCK + + A ++EM HGF P +SYT I YC++ +F KV L EM+
Sbjct: 228 NIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEA 287
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-- 333
G P+ IT T +M +L K+ EAL+V +MK C D+ FY+ LI L++A R
Sbjct: 288 NGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEE 347
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDS-CKPDCETHARS 374
YN+MI+ C EE A++L +++E + C PD T+
Sbjct: 348 AERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPL 407
Query: 375 LKMCCHK-------KRMKD--------------GMLVLNLMR------------EMLSKG 401
L+ C + K +K+ L+ L R EM+S+
Sbjct: 408 LRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQD 467
Query: 402 IVPQESTHKMLAEELEKKSLGNAKERIDELL 432
I P+ T +L EE++KK++ + ERI+ ++
Sbjct: 468 ITPRHRTCLLLLEEVKKKNMHESAERIEHIM 498
>gi|297828902|ref|XP_002882333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328173|gb|EFH58592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 506
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 187/395 (47%), Gaps = 83/395 (21%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG--YVSLAAMSTVMR 174
WA++ G+ H+ + Y+ V+ LGK+KK W+ +K E G V+L ++ +MR
Sbjct: 106 LNWAESCKGHKHSNDAYDMAVDILGKAKK----WDRLKVFVERMRGDKLVTLNTIAKIMR 161
Query: 175 RL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211
R +T +M++L+DTL K V A V L+ K I+ +
Sbjct: 162 RFAGAGEWEEAVGIFDKLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLELKSHITPN 221
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
+ F++ IHGWCK + + A ++EM HGF P +SYT I YC++ +F KV L
Sbjct: 222 AHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQSEFVKVYEMLS 281
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
EM+ G P+ IT T +M +L K+ EAL+V +MK C D+ FY+ LI L+++
Sbjct: 282 EMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCQPDSLFYNCLIHTLARSG 341
Query: 332 RF--------------------LIYNTMISSACVRSEEGNALKLRQKIEEDS-CKPDCET 370
R YN+MI+ C EE A++L +++E + C PD T
Sbjct: 342 RLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHT 401
Query: 371 HARSLKMCCHK-------KRMKD--------------GMLVLNLMR------------EM 397
+ L+ C + K +K+ L+ L R EM
Sbjct: 402 YQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANICEWAYCLFEEM 461
Query: 398 LSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
+S+ I P+ T +L EE++KK++ + ERI+ ++
Sbjct: 462 ISQDITPRHRTCLLLLEEVKKKNMHESAERIEHIM 496
>gi|297738349|emb|CBI27550.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 109/178 (61%), Gaps = 9/178 (5%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA+++ GY H PE Y+ MV+ LGK K+ M L++E+ + +L +ST
Sbjct: 99 FRWAESRLGYEHAPEAYDMMVDILGKLKQVDKMRALMEEMRQ-----GNLVRLSTK---- 149
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
+T +M++L+DTL K V A +FL+ K IS ++ F++ IHGWCK + D A+ ++
Sbjct: 150 NTESMNLLLDTLCKERKVEQARAIFLELKPHISPNTHTFNIFIHGWCKANRVDEAEWTIQ 209
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
EM HG P +SY+ I+ YCR+ +FRKV L +MQ +GC P+V+T T +M +L K
Sbjct: 210 EMKGHGCRPCVISYSTIIQSYCRQSNFRKVYELLDDMQAQGCAPNVVTYTTIMCSLTK 267
>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
Length = 655
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 156/338 (46%), Gaps = 45/338 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA Q GY H+ E Y AM++ LGK ++FG +W L++E+ + +VS +MRR
Sbjct: 142 FVWASKQPGYRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRF 201
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
D L+D L K SV A +F + + + +
Sbjct: 202 ASARMVKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLK 261
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F L++GWC+ K A+ + ++ + GF PD V Y + Y LKEM
Sbjct: 262 HFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEM 321
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FIL 327
+ K C+P+V++ T ++ AL K++ EA++V+ +M+S C D Y++LI +
Sbjct: 322 RRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKI 381
Query: 328 SKAVRFL--------IYNTM----ISSACVRSEE-GNALKLRQKIEEDSCKPDCETHARS 374
SK L I N M I +A + EE ++L +++ + C PD +
Sbjct: 382 SKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIV 441
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+++ C +K+G+ V N EM + G+ P T ++
Sbjct: 442 IRLACKLGEIKEGVRVWN---EMEATGLSPGLDTFVIM 476
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 21/204 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F LI C +K + A + EM G D V+YT I +C+ K L M
Sbjct: 333 FTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMI 392
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
++G P+ +T +M A EK +++ E +++ E+M+ C D +
Sbjct: 393 QQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLN---------------- 436
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
IYN +I AC E +++ ++E P +T + ++ + +
Sbjct: 437 IYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEA---CEFF 493
Query: 395 REMLSKGIV--PQESTHKMLAEEL 416
+EM+ +G++ PQ T K L L
Sbjct: 494 KEMVGRGLLSAPQYGTLKELLNSL 517
>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Vitis vinifera]
Length = 622
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 165/362 (45%), Gaps = 46/362 (12%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA Q GY H+ E Y AM++ LGK ++FG +W L++E+ + +VS +MRR
Sbjct: 109 FVWASKQPGYRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRF 168
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
D L+D L K SV A +F + + + +
Sbjct: 169 ASARMVKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLK 228
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F L++GWC+ K A+ + ++ + GF PD V Y + Y LKEM
Sbjct: 229 HFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEM 288
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FIL 327
+ K C+P+V++ T ++ AL K++ EA++V+ +M+S C D Y++LI +
Sbjct: 289 RRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKI 348
Query: 328 SKAVRFL--------IYNTM----ISSACVRSEE-GNALKLRQKIEEDSCKPDCETHARS 374
SK L I N M I +A + EE ++L +++ + C PD +
Sbjct: 349 SKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIV 408
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK-MLAEELEKKSLGNAKERIDELLT 433
+++ C +K+G+ V N EM + G+ P T M+ L ++ L A E E++
Sbjct: 409 IRLACKLGEIKEGVRVWN---EMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVG 465
Query: 434 HA 435
Sbjct: 466 RG 467
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 21/204 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F LI C +K + A + EM G D V+YT I +C+ K L M
Sbjct: 300 FTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMI 359
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
++G P+ +T +M A EK +++ E +++ E+M+ C D +
Sbjct: 360 QQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLN---------------- 403
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
IYN +I AC E +++ ++E P +T + ++ + +
Sbjct: 404 IYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVE---ACEFF 460
Query: 395 REMLSKGIV--PQESTHKMLAEEL 416
+EM+ +G++ PQ T K L L
Sbjct: 461 KEMVGRGLLSAPQYGTLKELLNSL 484
>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial [Vitis vinifera]
Length = 531
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 152/324 (46%), Gaps = 41/324 (12%)
Query: 104 SPDKVVEALKCFC---------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVK 154
SP V+E LK F WA+ Q G+ ++ E YNA++EALGK K+F ++W LV
Sbjct: 110 SPTLVLEVLKKLSNSGVIALSFFRWAEKQKGFKYSTENYNALIEALGKIKQFKMIWNLVN 169
Query: 155 EIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
D S G ++ + + RR RA V ++ KF LS
Sbjct: 170 --DMRSKGLLTQETFALISRRY-ARARKV--------KEAVETFEKMEKFGLQPVLSD-- 216
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ L+ CK+R + AQ+ +M F PD SYT +E + +E++ ++D +EM+
Sbjct: 217 FNRLLDALCKSRHVERAQEVFDKMKDRKFRPDIKSYTILLEGWGQEQNLLRLDEVYREMK 276
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
++G +P +T I+++A KA++ A++++ KM+++ C+ Y +LI L R
Sbjct: 277 DEGFEPDAVTYGILINAHCKARRYDAAVELFHKMEANKCMPTPHIYCTLINGLGSERRLT 336
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
AL+ ++ + P+ T+ + C RM D +++ M
Sbjct: 337 ----------------EALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEM 380
Query: 395 REMLSKGIVPQESTHKMLAEELEK 418
R+ G+ PQ T+ ++ L K
Sbjct: 381 RKC---GVGPQTRTYDIILHHLIK 401
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/357 (19%), Positives = 134/357 (37%), Gaps = 72/357 (20%)
Query: 97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI 156
++ +RY KV EA++ F + G +N +++AL KS+ E +E+
Sbjct: 184 LISRRYARARKVKEAVETF---EKMEKFGLQPVLSDFNRLLDALCKSRHV----ERAQEV 236
Query: 157 DELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIF 215
M R D ++ ++L++ + ++ +V+ + KD + +
Sbjct: 237 ---------FDKMKDRKFRPDIKSYTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTY 287
Query: 216 DVLIHGWCKTRKSDYA----------------------------QKAMKEMFQH------ 241
+LI+ CK R+ D A ++ + E Q
Sbjct: 288 GILINAHCKARRYDAAVELFHKMEANKCMPTPHIYCTLINGLGSERRLTEALQFFERSKA 347
Query: 242 -GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
GF+P+ +Y + YC+ + EM++ G P T I++H L KA++ E
Sbjct: 348 SGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKE 407
Query: 301 ALKVYEKMKSD-DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
A +V++ M S+ C S Y ++ + C AL++ ++
Sbjct: 408 AYRVFQGMSSEPGCEPSVSTYEIVVRMF----------------CNEERVDMALRVWDEM 451
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ P + + C++ ++ + EML GI P + L + L
Sbjct: 452 KAKGVLPGMHMFSTLINSLCYENKLDEA---CKYFHEMLDMGIRPPAAMFSNLKQTL 505
>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 664
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/397 (23%), Positives = 171/397 (43%), Gaps = 70/397 (17%)
Query: 84 SEDHETDVDKVSEILRK---RYPS----------------PDKVVE------ALKCFCFT 118
+++ DV+KV ILRK R P P++V+ L F
Sbjct: 93 ADEFSVDVEKVYRILRKFHTRVPKLELALQESGVIMRSGLPERVLSRCGDAGNLGYRFFV 152
Query: 119 WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-- 176
WA Q GY H+ E Y AM++ LGK ++FG +W L++E+ + + ++ +MRR
Sbjct: 153 WASKQPGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFAS 212
Query: 177 ---------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF 215
D L+D L K SV A +F + + + + F
Sbjct: 213 VRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFNPNLRHF 272
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
L++GWC+ K A+ + ++ + GF PD V Y + Y + R L EM++
Sbjct: 273 TSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKK 332
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR--- 332
C P+ + TI++ + K +++ EA++++ +M+ C D Y++LI K
Sbjct: 333 VNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDK 392
Query: 333 -FLIYNTMI---------SSACV------RSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+ I + MI S C+ + E ++L +++ + C PD + ++
Sbjct: 393 AYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIR 452
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
+ C +K+ + L EM + G+ P T+ ++
Sbjct: 453 LVCKLGDLKE---AVRLWGEMQAGGLNPGLDTYILMV 486
>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
Length = 534
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/408 (24%), Positives = 177/408 (43%), Gaps = 65/408 (15%)
Query: 50 DTQSPDEDFVIPSLASWVESLKLNEQSRISS-HALSEDHETDVDKVSEILRKRYPSPDKV 108
D+ P +F I SL+ N+ S+IS+ H++S V + S +R P
Sbjct: 81 DSTPPCPNFTISSLS--------NDLSQISAPHSVSPAVVRYVIEKSGAVRHGIP----F 128
Query: 109 VEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAA 168
+ AL F WA G+ H+P+ YN M++ GK K+FGL W L+ ++ + N +++
Sbjct: 129 LPALAFF--NWATAGEGFEHSPQPYNEMIDLAGKVKQFGLAWYLI-DLMKARNVEITVVT 185
Query: 169 MSTVMRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205
S ++RR D A S ++ L K+ A F K
Sbjct: 186 FSMLVRRYVRAGLAAEAVHAFNRMEDYGCNADIIAFSNVISILCKKRRAVEAQSFFDNLK 245
Query: 206 DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
++ L+HGWC+ A+ +EM G SP+ +Y+ I+ CR +
Sbjct: 246 HKFEPDVIVYTSLVHGWCRAGDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQITR 305
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
EM + GC P+ +T ++ +A + + L+VY +MK C D Y+ LI
Sbjct: 306 AHDVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLIE 365
Query: 326 I------LSKAVRFLIYNTMISSAC--------------VRSEEGN-ALKLRQKIEEDSC 364
L +A++ L N+M + C +S++ N A ++ +++E C
Sbjct: 366 THCKDDNLGEAIKVL--NSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGC 423
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
KP+ T+ ++M K ++ L +EM + + P +T++ L
Sbjct: 424 KPNTVTYNILMRMFAVPKSAD---MIFKLKKEMDEEEVEPNFNTYREL 468
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 4/136 (2%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI CK A K + M ++ +P+ S+ + +D M+
Sbjct: 360 YNFLIETHCKDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMK 419
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
E GCKP+ +T I+M K K+ ++M ++ + + Y LI +
Sbjct: 420 EVGCKPNTVTYNILMRMFAVPKSADMIFKLKKEMDEEEVEPNFNTYRELIALYCGMGHWN 479
Query: 333 --FLIYNTMISSACVR 346
++ + MI C++
Sbjct: 480 HAYMFFREMIDEKCIK 495
>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 641
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 94/397 (23%), Positives = 171/397 (43%), Gaps = 70/397 (17%)
Query: 84 SEDHETDVDKVSEILRK---RYPS----------------PDKVVE------ALKCFCFT 118
+++ DV+KV ILRK R P P++V+ L F
Sbjct: 70 ADEFSVDVEKVYRILRKFHTRVPKLELALQESGVIMRSGLPERVLSRCGDAGNLGYRFFV 129
Query: 119 WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-- 176
WA Q GY H+ E Y AM++ LGK ++FG +W L++E+ + + ++ +MRR
Sbjct: 130 WASKQPGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFAS 189
Query: 177 ---------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF 215
D L+D L K SV A +F + + + + F
Sbjct: 190 VRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFNPNLRHF 249
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
L++GWC+ K A+ + ++ + GF PD V Y + Y + R L EM++
Sbjct: 250 TSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKK 309
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR--- 332
C P+ + TI++ + K +++ EA++++ +M+ C D Y++LI K
Sbjct: 310 VNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDK 369
Query: 333 -FLIYNTMI---------SSACV------RSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+ I + MI S C+ + E ++L +++ + C PD + ++
Sbjct: 370 AYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIR 429
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
+ C +K+ + L EM + G+ P T+ ++
Sbjct: 430 LVCKLGDLKE---AVRLWGEMQAGGLNPGLDTYILMV 463
>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
Length = 439
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 160/352 (45%), Gaps = 50/352 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA Q Y+H+ Y++M+E+L K +++ ++W+LV + + +++ A +MR+
Sbjct: 43 FEWASKQRNYVHSVRAYHSMIESLAKIRQYQMVWDLVNAMR--NKEILNVEAFCIIMRKY 100
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+ A + L+ L K +V A ++F KD S+
Sbjct: 101 ARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLLSALCKSKNVRKAQEIFDNMKDQFVPDSK 160
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ +LI GW + A++ +EM G PD V+Y+ ++ C+ + +KEM
Sbjct: 161 TYSILIEGWGRAPNLPKAREIYREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKEM 220
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
CKPS ++++H +I +A+ + +M+ + + D + Y++LI KA +
Sbjct: 221 DYNNCKPSSFIYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKM 280
Query: 334 L-IY------------------NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
+Y N +I+S R E A K+ +++ + C+PD +++
Sbjct: 281 KNVYRVLKDMDLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRMIK-VCEPDVDSYTMI 339
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
+KM C +K + + L + + M K VP T +L L + +GNA +
Sbjct: 340 IKMFCGRKELD---MALKIWKYMKKKQFVPSMHTFSVLINGLCQ--IGNATQ 386
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 91/201 (45%), Gaps = 16/201 (7%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
+ +L Y +++ +A+ F + G M YNA++ A K+ K ++ ++
Sbjct: 231 IYSVLVHTYGVENRIEDAVSTF---LEMERNGVMADVAAYNALISAFCKANKMKNVYRVL 287
Query: 154 KEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
K++D L ++ ++R ++++++L+ R A+K+F +
Sbjct: 288 KDMD--------LKGVNP-----NSRTCNIIINSLIGRGETDEAFKIFRRMIKVCEPDVD 334
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ ++I +C ++ D A K K M + F P +++ I C+ + + L+EM
Sbjct: 335 SYTMIIKMFCGRKELDMALKIWKYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEM 394
Query: 274 QEKGCKPSVITCTIVMHALEK 294
EKG +PS T + H L K
Sbjct: 395 IEKGIRPSGATFGRLRHLLIK 415
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 26/225 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEID-----ELSNGYVSLAAMSTVMRRL---------- 176
TY+ MV+ L K+ + E+VKE+D S Y L V R+
Sbjct: 196 TYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENRIEDAVSTFLEM 255
Query: 177 -------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC--ISLSSQIFDVLIHGWCKTRK 227
D A + L+ K N + + Y+V LK D ++ +S+ +++I+ +
Sbjct: 256 ERNGVMADVAAYNALISAFCKANKMKNVYRV-LKDMDLKGVNPNSRTCNIIINSLIGRGE 314
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
+D A K + M + PD SYT I+ +C K+ K M++K PS+ T ++
Sbjct: 315 TDEAFKIFRRMIKVC-EPDVDSYTMIIKMFCGRKELDMALKIWKYMKKKQFVPSMHTFSV 373
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
+++ L + +A + E+M + + L +L K R
Sbjct: 374 LINGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHLLIKEGR 418
>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Vitis vinifera]
Length = 531
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 144/337 (42%), Gaps = 45/337 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA + H+PE Y M++ GK ++F L W+L+ ++ + N + + + ++RR
Sbjct: 133 FNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLI-DLMKTRNVEIPVETFTILVRRY 191
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
D A SV++ +L K+ A F KD
Sbjct: 192 VKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVV 251
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ L+HGWC+ A++ EM G P+ +Y+ I+ CR + EM
Sbjct: 252 VYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEM 311
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------L 327
+ GC P+ IT +M KA + + L+VY +MK C D Y+ LI L
Sbjct: 312 IDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNL 371
Query: 328 SKAVRFL------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+AV+ L +N + + +A ++ K+++ C+P+ T+ +
Sbjct: 372 EEAVKILNSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILM 431
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+M KK +VL L +EM I P +T+++L
Sbjct: 432 RMFADKKSTD---MVLKLRKEMDENEIEPNANTYRVL 465
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 2/142 (1%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKA 234
L+ + + + + K V A+++F K KD + + +++L+ + + +D K
Sbjct: 387 LNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKL 446
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC-KPSVITCTIVMHALE 293
KEM ++ P+ +Y I +C + KEM E+ C +PS+ +V+ L
Sbjct: 447 RKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLR 506
Query: 294 KAKQIYEALKVYEKMKSDDCLT 315
KA Q+ + ++ EKM + +T
Sbjct: 507 KAGQLKKHEELVEKMVNRGFVT 528
>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g20300, mitochondrial; Flags: Precursor
gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
contains multiple PPR PF|01535 repeats [Arabidopsis
thaliana]
gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 537
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 148/342 (43%), Gaps = 51/342 (14%)
Query: 117 FTWAKTQTGYMH-TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR 175
F WA ++ Y H +P YN M++ GK ++F L W L+ ++ + N +S+ + ++RR
Sbjct: 137 FNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLI-DLMKSRNVEISIETFTILIRR 195
Query: 176 L-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS 212
D A S+++ L ++ + A F KD
Sbjct: 196 YVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDV 255
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
++ L+ GWC+ + A+K KEM G P+ +Y+ I+ CR + +
Sbjct: 256 IVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFAD 315
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------ 326
M + GC P+ IT +M KA + + L+VY +MK C DT Y+ LI
Sbjct: 316 MLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDEN 375
Query: 327 LSKAVRFLIYNTMISSAC---------------VRSEEGNALKLRQKIEEDSCKPDCETH 371
L AV+ L NTMI C + + A ++ K+ E C+P+ T+
Sbjct: 376 LENAVKVL--NTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTY 433
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
++M K +VL + +EM K + P +T+++L
Sbjct: 434 NILMRMFVGSKSTD---MVLKMKKEMDDKEVEPNVNTYRLLV 472
>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
Length = 1563
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 144/337 (42%), Gaps = 45/337 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA + H+PE Y M++ GK ++F L W+L+ ++ + N + + + ++RR
Sbjct: 1165 FNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLI-DLMKTRNVEIPVETFTILVRRY 1223
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
D A SV++ +L K+ A F KD
Sbjct: 1224 VKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVV 1283
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ L+HGWC+ A++ EM G P+ +Y+ I+ CR + EM
Sbjct: 1284 VYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEM 1343
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------L 327
+ GC P+ IT +M KA + + L+VY +MK C D Y+ LI L
Sbjct: 1344 IDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNL 1403
Query: 328 SKAVRFL------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+AV+ L +N + + +A ++ K+++ C+P+ T+ +
Sbjct: 1404 EEAVKILNSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILM 1463
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+M KK +VL L +EM I P +T+++L
Sbjct: 1464 RMFADKKSTD---MVLKLRKEMDENEIEPNANTYRVL 1497
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 2/142 (1%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKA 234
L+ + + + + K V A+++F K KD + + +++L+ + + +D K
Sbjct: 1419 LNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKL 1478
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC-KPSVITCTIVMHALE 293
KEM ++ P+ +Y I +C + KEM E+ C +PS+ +V+ L
Sbjct: 1479 RKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLR 1538
Query: 294 KAKQIYEALKVYEKMKSDDCLT 315
KA Q+ + ++ EKM + +T
Sbjct: 1539 KAGQLKKHEELVEKMVNRGFVT 1560
>gi|255580124|ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529547|gb|EEF31500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 151/345 (43%), Gaps = 45/345 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR-- 174
F WAK G+ H+ E+Y+ +V+ LG SK+F L+W+ + EI E + +S V R
Sbjct: 95 FLWAKRIPGFDHSKESYHILVDILGSSKQFALLWDFLIEIRESQDFEISPQVFWLVFRAY 154
Query: 175 ---RLDTRAMSV------------------LMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
L + A+ L+ L KR HA ++F + K ++
Sbjct: 155 SRANLPSDAIRAFDRMVEFGLKPTIDDLDQLLYVLCKRKHAKHAQQIFDRVKHQFQTRAK 214
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ +L+ GW +S A K EM + + D ++Y +E +C+ + +EM
Sbjct: 215 TYSILVRGWGDIGESVSACKVFDEMREQQCAVDVLAYNSLLEAFCKGGKVSEAYKMFREM 274
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK---- 329
G KP T +I + A +A I+ A +V ++MK D + + Y+ +I L K
Sbjct: 275 GSNGIKPDACTFSIFIRAYCEANDIHLAYRVLDEMKRYDLVPNVFTYNCMIKKLCKKEKV 334
Query: 330 --AVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
A + L YN +++ C SE +A +L ++ +D+C PD ++
Sbjct: 335 EEAYQLLNEIIERSGQPDAWSYNAILAYHCEHSEVNSATRLISRMVKDNCLPDKHSYNML 394
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
LK+ R + V M E KG P ST+ ++ L KK
Sbjct: 395 LKLLIRVGRFDRAIEVWESMGE---KGFYPSVSTYSVMVHGLCKK 436
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 84/215 (39%), Gaps = 52/215 (24%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
YN+++EA K K +++ +E+ SNG + D S+ + +
Sbjct: 250 AYNSLLEAFCKGGKVSEAYKMFREMG--SNGI-----------KPDACTFSIFIRAYCEA 296
Query: 192 NSVAHAYKVFLKFKDCISLSSQIF--DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
N + AY+V + K L +F + +I CK K + A + + E+ + PD S
Sbjct: 297 NDIHLAYRVLDEMKR-YDLVPNVFTYNCMIKKLCKKEKVEEAYQLLNEIIERSGQPDAWS 355
Query: 250 YTCFIEHYC-----------------------------------REKDFRKVDYTLKEMQ 274
Y + ++C R F + + M
Sbjct: 356 YNAILAYHCEHSEVNSATRLISRMVKDNCLPDKHSYNMLLKLLIRVGRFDRAIEVWESMG 415
Query: 275 EKGCKPSVITCTIVMHALEKAK-QIYEALKVYEKM 308
EKG PSV T ++++H L K K ++ EA K +E M
Sbjct: 416 EKGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMM 450
>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 104/422 (24%), Positives = 182/422 (43%), Gaps = 74/422 (17%)
Query: 29 LCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHA-LSEDH 87
LC++H I L +K ++ F S + S LN Q I HA L ++
Sbjct: 24 LCSQHLIIQSFINLQQVIK-------NQTFTRNSRGRALLSPHLNFQRSI--HADLEQNP 74
Query: 88 ETDVDKVSEILRK------RYP---------------SPDKVVEALKCFC---------F 117
E DK+ E R + P SP V+E LK F
Sbjct: 75 EIFTDKIIEDTRNICRLLSKNPNSSIEKLLLGASFKVSPALVLEVLKRLSNAGALALSFF 134
Query: 118 TWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD 177
WA+ Q G+M+ E+YNA++++LGK K+F ++W LV ++ G ++ + + RR
Sbjct: 135 KWAEKQKGFMYNTESYNALIDSLGKIKQFNMIWNLVNDMKR--KGVLTKETFALISRRY- 191
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
+ V A F K K + + S F+ L+ K+R+ AQ
Sbjct: 192 -----------ARSGKVKEAMNTFEKMEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFD 240
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
+M F PD SYT +E + +EK+ K+D +EM+++G +P V+T I+++A K +
Sbjct: 241 KMKIRRFVPDIKSYTILLEGWGQEKNLLKLDEVYREMKDEGFEPDVVTYGILINAYCKVR 300
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
+ +A++++ +M+S +C + +LI L R AL+
Sbjct: 301 KYDDAIELFREMESKNCQPSPHIFCTLINGLGSVRRL----------------SEALEFF 344
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ + P+ T+ + C R+ D +++ MR+ G+ P T+ ++ L
Sbjct: 345 RRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRK---SGVGPNSRTYDIILHHL 401
Query: 417 EK 418
K
Sbjct: 402 IK 403
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 136/312 (43%), Gaps = 48/312 (15%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
++Y ++E G+ K + E+ +E+ + G+ D +L++ K
Sbjct: 252 KSYTILLEGWGQEKNLLKLDEVYREMKD--EGFEP-----------DVVTYGILINAYCK 298
Query: 191 RNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
A ++F ++ K+C S IF LI+G R+ A + + GF+P+
Sbjct: 299 VRKYDDAIELFREMESKNC-QPSPHIFCTLINGLGSVRRLSEALEFFRRSKASGFAPETP 357
Query: 249 SYTCFIEHYC---REKD-FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
+Y + YC R D +R VD EM++ G P+ T I++H L KA++ EA V
Sbjct: 358 TYNAVVGAYCWSMRIDDAYRMVD----EMRKSGVGPNSRTYDIILHHLIKAEKTTEAFSV 413
Query: 305 YEKMKS-DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS 363
+EKM S ++C S Y+ ++ C + +A+K+ +++
Sbjct: 414 FEKMSSEEECEPTVS----------------TYDIIVRMFCNMDKVESAIKVWDRMKAKG 457
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES--TH--KMLAEELEKK 419
P + + CH+ ++ + +EML GI P + +H + L E+ K
Sbjct: 458 VHPGMHMFSILINSLCHENKLD---IACKYFQEMLDVGIRPPAALFSHLKQALIEDGRKD 514
Query: 420 SLGNAKERIDEL 431
++ ++ID+L
Sbjct: 515 TVVLLAQKIDKL 526
>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 528
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 147/340 (43%), Gaps = 50/340 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA ++ G+ H PE YN M++ GK + F L W+++ ++ + N +S+ S ++RR
Sbjct: 129 FNWATSRPGFTHHPEPYNEMIDLAGKVRNFDLGWQVI-DLMKARNVEISIETFSILIRRY 187
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
D A S+L+ L ++ A F KD
Sbjct: 188 VRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSLKDKFEPDVI 247
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ L+ GWC+ A++ EM G P+ +YT I+ CR + EM
Sbjct: 248 VYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEM 307
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FIL 327
+ GC+P+ IT ++ KA + + L+VY +MK C DT Y+ LI L
Sbjct: 308 LDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHCKDGNL 367
Query: 328 SKAVRFLIYNTMISSACVRSEE------GNALKLRQ---------KIEEDSCKPDCETHA 372
+A++ L N+M+ C + G+ KLR K++E CK + T+
Sbjct: 368 DEALKVL--NSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKELKCKANTVTYN 425
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
++M K +VL L +EM + P +T+ +L
Sbjct: 426 ILMRMFVDTKSTD---MVLKLKKEMDEDDVEPNVNTYCVL 462
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 17/163 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI CK D A K + M + G SP+ ++ + +D +M+
Sbjct: 354 YNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMK 413
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
E CK + +T I+M K LK+ ++M DD + + Y L
Sbjct: 414 ELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVL----------- 462
Query: 335 IYNTMISSACVRSEEGNALK-LRQKIEEDSCKPDCETHARSLK 376
I+ C NA K R+ +EE KP + + L+
Sbjct: 463 -----IAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVYEKVLQ 500
>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Glycine max]
Length = 628
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/419 (23%), Positives = 178/419 (42%), Gaps = 71/419 (16%)
Query: 85 EDHETDVDKVSEILRKRYPSPDKVVEALK-----------------CF--------CFTW 119
++ +DV+KV ILRK + K+ AL+ C ++W
Sbjct: 60 DEFASDVEKVYRILRKYHSRVPKLELALRESGVVVRPGLTERVLNRCGDAGNLAYRFYSW 119
Query: 120 AKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL--- 176
A Q+G+ + Y AM++ L + ++FG +W L++E+ + + ++ +MRR
Sbjct: 120 ASKQSGHRLDHDAYKAMIKVLSRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASA 179
Query: 177 --------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD 216
D L+D L K SV A +F + + S + F
Sbjct: 180 RMVHKAVQVLDEMPNYGCEPDEYVFGCLLDALRKNGSVKEAASLFEELRYRWKPSVKHFT 239
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
L++GWCK K A+ + +M G PD V Y + Y + LKEM+ K
Sbjct: 240 SLLYGWCKEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRK 299
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--- 333
GC+P+ + T+++ +L K +++ EA +V+ +M+ + C D YS+LI K +
Sbjct: 300 GCEPNATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQADLVTYSTLISGFCKWGKIKRG 359
Query: 334 ----------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
+IY ++ + + E +L ++++ C PD + +++
Sbjct: 360 YELLDEMIQQGHFPNQVIYQHIMVAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRL 419
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK-MLAEELEKKSLGNAKERIDELLTHA 435
C +K+G+ + N EM S G+ P T M+ LE+ L A E E++
Sbjct: 420 ACKLGEVKEGVRLWN---EMESSGLSPSIDTFVIMINGFLEQGCLVEACEYFKEMVGRG 475
>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 638
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 148/342 (43%), Gaps = 45/342 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI-------------------- 156
F WA Q Y H+ E Y +MV+ L K ++FG +W L++E+
Sbjct: 135 FVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRF 194
Query: 157 ---DELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
D + L M T D L+D L K SV A K+F + ++ +
Sbjct: 195 ASADMVKKAIEVLDEMPTFGLEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRLRFPVNLR 254
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F L++GWC+ K A+ + +M + GF PD V YT + Y LK+M
Sbjct: 255 YFTSLLYGWCREEKMMEAKYVLVQMKEAGFEPDIVDYTNLLSGYANAGKMADAYDLLKDM 314
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR- 332
+ +G +P+ T+++ AL K ++ EA+KV+ +M+ +C D Y++L+ K +
Sbjct: 315 RRRGFEPNATCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKI 374
Query: 333 ---FLIYNTMISSACVRSEEG---------------NALKLRQKIEEDSCKPDCETHARS 374
+L+ + MI + S+ L+L +K+++ PD +
Sbjct: 375 DKCYLVLDDMIKKGLMPSQLTYMHIMAAHEKKEKLIECLELMEKMKQIEYHPDIGIYNVV 434
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+++ C +K+ + + N EM G+ P T ++ L
Sbjct: 435 IRLACKLGEVKEAVRLWN---EMEGNGLSPGADTFVIIINGL 473
>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 512
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 158/365 (43%), Gaps = 57/365 (15%)
Query: 76 SRISSHALSEDHETDVDKVSEILRKRYPS--------------PDKVVEALKCF------ 115
S + + + D D DK+ +IL K S P + E LK
Sbjct: 53 SSVETQVSANDVSQDADKICKILSKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVL 112
Query: 116 ---CFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
F WA+ Q G+ HT YNA++E+LGK K+F L+W LV ++ + +S + +
Sbjct: 113 ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWNLVDDMKQ--KKLLSKDTFALI 170
Query: 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYA 231
RR + V A F K +D + S F+ ++ K+R A
Sbjct: 171 SRRY------------ARARKVKEAITAFHKMEDYGFKMESSDFNRMLDILSKSRNVGDA 218
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
QK +M + F PD SYT +E + +E + +V+ EM+++G +P V+ I+++A
Sbjct: 219 QKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVNEVYGEMKDEGFEPDVVAYGIIINA 278
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN 351
KAK+ EA++ + +M+ +C + SLI L + +
Sbjct: 279 YCKAKKYDEAVRFFNEMEQRNCKPSPHIFCSLINGLGSEKKL----------------ND 322
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
AL+ ++ + + T+ + C +RM+D ++ EM SKGI P T+ +
Sbjct: 323 ALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAFKTVD---EMRSKGIGPNARTYDI 379
Query: 412 LAEEL 416
+ L
Sbjct: 380 ILHHL 384
>gi|225431703|ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial [Vitis vinifera]
gi|296088528|emb|CBI37519.3| unnamed protein product [Vitis vinifera]
Length = 525
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 150/358 (41%), Gaps = 66/358 (18%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WAK Q + H +YN +++ L K ++F + W+ + E+D+ SL ST R L
Sbjct: 104 FLWAKDQAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQ-----NSLEPTSTTFRIL 158
Query: 177 DTRAMSV----------------------------LMDTLVKRNSVAHAYKVFLKFKDCI 208
R++S L+DTL K V A ++F + K
Sbjct: 159 IRRSVSAGLTRQAVRAFDDMSCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQRKFKF 218
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR--------- 259
+++++ +LI+GWCK + A++ + EM + G + V+Y + CR
Sbjct: 219 EANAKMYTILIYGWCKINRVSIAERLLGEMVERGIEANVVTYNVLLNGICRRASLHPDDR 278
Query: 260 -EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318
E+ R + L EM++KG +P V + +IV+H +A + L MK +
Sbjct: 279 FERTIRDAEKVLDEMRQKGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVA 338
Query: 319 FYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKI 359
Y+S++ L R YN R + NAL+L +K+
Sbjct: 339 TYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKM 398
Query: 360 -EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
EE SC PD T+ + M RM+ +V + +M + G P ++ +L L
Sbjct: 399 KEEYSCLPDMHTYNILVGMFVKLNRME---IVQEIWDDMKTSGAGPDLDSYTLLIHGL 453
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++L+ + K + + Q+ +M G PD SYT I C ++ +++ + EM
Sbjct: 411 YNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEACHFFVEMI 470
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
EKG P IT + L ++ + LK + ++K
Sbjct: 471 EKGYLPQKITFETLYRGLIQS----DMLKTWRRLK 501
>gi|224068054|ref|XP_002302657.1| predicted protein [Populus trichocarpa]
gi|222844383|gb|EEE81930.1| predicted protein [Populus trichocarpa]
Length = 602
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 107/231 (46%), Gaps = 23/231 (9%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA Q Y H E Y AM++ L K K+FG +W L++E+ ++ ++ VMRR
Sbjct: 102 FVWASKQPCYRHCYENYKAMIKVLSKMKQFGAVWALLEEMRRDNSVLITSEVFVVVMRRF 161
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
D L+D L K SV A +F + S S +
Sbjct: 162 ASSRMVNKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFSPSLK 221
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F L++GWCK K A+ + +M + GF PD V Y + Y LKE+
Sbjct: 222 HFTCLLYGWCKEGKLLEAKHVLVQMREAGFEPDIVVYNNLLSGYATAGKMGDAFDLLKEI 281
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ KGC P+ + TI++ AL +++ EA++V+ +M+ C D Y++L+
Sbjct: 282 RRKGCDPNATSYTILIQALCGQEKMDEAMRVFVEMERSGCDADVVTYTALV 332
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 94/231 (40%), Gaps = 35/231 (15%)
Query: 96 EILRKRYPSPDKVVEALKCFCFTWAK--------------TQTGYMHTPETYNAMVEALG 141
E +R R+ SP ++ C + W K + G+ YN ++
Sbjct: 210 EDMRVRF-SPS--LKHFTCLLYGWCKEGKLLEAKHVLVQMREAGFEPDIVVYNNLLSGYA 266
Query: 142 KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS--VLMDTLVKRNSVAHAYK 199
+ K G ++L+KEI + D A S +L+ L + + A +
Sbjct: 267 TAGKMGDAFDLLKEIRR---------------KGCDPNATSYTILIQALCGQEKMDEAMR 311
Query: 200 VFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258
VF++ + + L+ G+CK R D + ++ M Q G P+ ++Y + +
Sbjct: 312 VFVEMERSGCDADVVTYTALVSGFCKWRMIDKGYQILQSMIQKGHMPNQLTYLHLMLAHE 371
Query: 259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
++++ + + EMQ+ GC P + +V+ K ++ + + +M+
Sbjct: 372 KKEELEECKELMGEMQKIGCIPDLSIYNVVIRLACKLGEVNAGVDAWNEME 422
>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 530
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 154/360 (42%), Gaps = 49/360 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRR 175
F WA T G+ +PE YN M++ GK + F L W L+ + S G ++++ S ++RR
Sbjct: 130 FNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMK--SRGVRITVSTFSVLVRR 187
Query: 176 L-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS 212
D + S+++ +L K+ + A F K
Sbjct: 188 YVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLKHKFEPDV 247
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
++ L+HGWC+ A++ +M + G P+ +Y+ I+ CR + E
Sbjct: 248 IVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSE 307
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------ 326
M + GC P+ +T +M KA + + L+VY +MK C DT Y+ LI
Sbjct: 308 MIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDEN 367
Query: 327 LSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
L +AV+ L +N++ + A ++ K++E C P+ T+
Sbjct: 368 LDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNTLTYNI 427
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELL 432
++M K + +VL L +EM + P +T+++L EK NA + E++
Sbjct: 428 LMRMFADSKSID---MVLKLKKEMDESEVEPNVNTYRILILMFCEKGHWNNAYNLMKEMV 484
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 82/179 (45%), Gaps = 15/179 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
+YN ++E+ K + E VK +D + V+ A + + + + +
Sbjct: 354 SYNFLIESHCKDENLD---EAVKVLDTMVKKGVAPNAST----------FNSIFGCIAEL 400
Query: 192 NSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ V A++++ K K+ + + + +++L+ + ++ D K KEM + P+ +Y
Sbjct: 401 HDVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTY 460
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGC-KPSVITCTIVMHALEKAKQIYEALKVYEKM 308
I +C + + +KEM E+ C KP++ V+ L A Q+ + ++ EKM
Sbjct: 461 RILILMFCEKGHWNNAYNLMKEMVEEKCLKPNLSIYETVLELLRNAGQLKKHEELVEKM 519
>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 98/407 (24%), Positives = 164/407 (40%), Gaps = 64/407 (15%)
Query: 51 TQSPDEDFVIPSLA---SWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDK 107
T PD + I SL+ S + S + I H +++ S +R P P
Sbjct: 27 TPPPDPTYTISSLSLDFSQIISTVRSISPSIVRHVIAQ---------SSAVRHGIPVPQV 77
Query: 108 VVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLA 167
+ F WA Q G+ +PE YN MV+ G+ F + W + ++ + N V++
Sbjct: 78 LA------FFNWASNQDGFRKSPEAYNEMVDFSGQVMMFDVAWYFI-DLMKARNVDVTVE 130
Query: 168 AMSTVMRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKF 204
+MRR D A S+L+ L + + A + F
Sbjct: 131 TFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFDSL 190
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
KD ++ L+ GWC+ A++ EM G P+ +Y+ I+ CR
Sbjct: 191 KDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQIT 250
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ EM + GC+P+ IT +M KA + + L+VY +MK C DT Y+ LI
Sbjct: 251 RAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLI 310
Query: 325 FI------LSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
L A++ + +NT+ + A ++ +K++E +C+
Sbjct: 311 ETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKELNCE 370
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ T+ +KM K +VL L EM I P +T+K+L
Sbjct: 371 ANTVTYNTLMKMFVASKSTD---MVLKLKTEMDENKIEPNVNTYKVL 414
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
+ + L + K V A++++ K K+ ++ + ++ L+ + ++ +D K
Sbjct: 337 NASTFNTLFGCIAKLGDVNAAHRMYKKMKELNCEANTVTYNTLMKMFVASKSTDMVLKLK 396
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC-KPSVITCTIVMHALEK 294
EM ++ P+ +Y I YC + +EM ++ C +PS+ +V+ L K
Sbjct: 397 TEMDENKIEPNVNTYKVLITMYCGMGHWNNAYKFFREMIDEKCLRPSLPVYDMVLQQLRK 456
Query: 295 AKQIYEALKVYEKM 308
A Q+ + ++ EKM
Sbjct: 457 AGQLKKHEELVEKM 470
>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 507
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 158/359 (44%), Gaps = 55/359 (15%)
Query: 83 LSEDHETDVDKVSEILRKRYP---SPDKVVEALKCFC---------FTWAKTQTGYMHTP 130
LS E+ VD + + +P SP+ VV L F WA+ Q G+ H
Sbjct: 65 LSTTPESPVD----VSLRNFPVEVSPELVVAVLNKLSNAGILALSFFRWAEKQQGFNHNT 120
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
E ++A++EALGK ++F ++W LV E+ + + L+ S++ V+
Sbjct: 121 EIFHALIEALGKIRQFKMIWNLVDEMKQ--------------RKLLNGDTFSLIARRYVR 166
Query: 191 RNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTR-KSDYAQKAMKEMFQHGFSPDG 247
+ A K F + + L QI F+ LI CK++ + AQ+ +M Q P+
Sbjct: 167 AKVIKEALKTFERMEK-YGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQWNLEPNL 225
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
SYT IE + ++++ KVD +EM++ G +P V+T I+++A KAK+ EA+ +Y
Sbjct: 226 KSYTILIEGWSQQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHD 285
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
M S + Y + I L R A + +K + P+
Sbjct: 286 MLSKNVNPSPHIYCTFITGLGNGSRM----------------DEAFEFFEKSKASGFPPE 329
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
T+ + C R+ D ++ M+E+ GI P T+ ++ L K G KE
Sbjct: 330 APTYNAVVSAYCWSMRIDDAYRIVGEMKEL---GIGPNARTYDIILVHLIKG--GRTKE 383
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ ++ +C + + D A + + EM + G P+ +Y + H + ++ + M
Sbjct: 333 YNAVVSAYCWSMRIDDAYRIVGEMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRMS 392
Query: 275 -EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
E GC+PSV T I++ Q+ A+ V+ +MK L +S+LI L
Sbjct: 393 SETGCEPSVSTYAIMVRMFCNENQLDMAMVVWNEMKDKGILPGIHMFSTLIISL 446
>gi|15239161|ref|NP_201383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170571|sp|Q9FH87.1|PP447_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g65820
gi|9758569|dbj|BAB09050.1| unnamed protein product [Arabidopsis thaliana]
gi|332010728|gb|AED98111.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 637
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 157/362 (43%), Gaps = 46/362 (12%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA Q Y H+ E Y +MV+ L K ++FG +W L++E+ + + + +++R
Sbjct: 134 FVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRF 193
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
D L+D L K SV A K+F + ++ +
Sbjct: 194 ASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLR 253
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F L++GWC+ K A+ + +M + GF PD V YT + Y L++M
Sbjct: 254 YFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDM 313
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR- 332
+ +G +P+ T+++ AL K ++ EA+KV+ +M+ +C D Y++L+ K +
Sbjct: 314 RRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKI 373
Query: 333 ---FLIYNTMISSACVRSEEG---------------NALKLRQKIEEDSCKPDCETHARS 374
+++ + MI + SE L+L +K+ + PD +
Sbjct: 374 DKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVV 433
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLT 433
+++ C +K+ + + N EM G+ P T ++ L + L A + E++T
Sbjct: 434 IRLACKLGEVKEAVRLWN---EMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVT 490
Query: 434 HA 435
Sbjct: 491 RG 492
>gi|255548349|ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545711|gb|EEF47215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 505
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 153/338 (45%), Gaps = 50/338 (14%)
Query: 91 VDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMW 150
+DKV + +R + +P ++AL+ F +T + G+ HTP + + ++ LG+S+KF +W
Sbjct: 71 IDKVLKRVRFSHGNP---LQALEFFYYT--DNRKGFYHTPYSLDTILYILGRSRKFDHIW 125
Query: 151 ELVKEIDELSNGYVSLAAMSTVMRR-----------------------LDTRAMSVLMDT 187
+++ ++ +S M V+ R LDT + L+ T
Sbjct: 126 DVLIKMKRKDRFLISPRTMQIVLARVAKLCSVRQTVESFRKFKKFVSVLDTTCFNALLRT 185
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
L + S+ A V+ + K + Q F++L+ GW ++S+ A+ +EM + G PD
Sbjct: 186 LCQEKSMTDARNVYHRLKKEFKPNLQTFNILLSGW---KQSEEAELFFEEMRELGIKPDV 242
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
VSY I+ YC++++ K +++M+E+ P VIT T ++ L Q +A + +
Sbjct: 243 VSYNSLIDVYCKDREMEKAYKVVEKMREEDISPDVITYTSIIGGLGLVGQPDKARDILNE 302
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
MK C D + YN +I + C+ G+A L ++ P+
Sbjct: 303 MKEYGCYPDVA----------------AYNAVIRNYCIAKRLGDASNLMDEMASKGLSPN 346
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
T+ ++ +++ +L R M+ G +P
Sbjct: 347 ATTYNLFFRVFYWSNDLRNSW---SLYRRMMESGCLPN 381
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I +C ++ A M EM G SP+ +Y F + D R + M
Sbjct: 315 YNAVIRNYCIAKRLGDASNLMDEMASKGLSPNATTYNLFFRVFYWSNDLRNSWSLYRRMM 374
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
E GC P+ +C ++ K +++ AL ++ M
Sbjct: 375 ESGCLPNTQSCMFLIRLFRKHEKVEMALTLWNDM 408
>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 168/365 (46%), Gaps = 81/365 (22%)
Query: 104 SPDKVVEALKCFC---------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVK 154
SP V EALK F WA+ Q G+ ++ E+Y+A++E+LGK K+F ++W LV
Sbjct: 4 SPSLVFEALKKLSNAGALALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIWNLVT 63
Query: 155 EIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQ 213
++ + G ++ + + RR + V A F+K K + + S
Sbjct: 64 DMKQ--KGLLNKETFALISRRY------------ARARKVKEAVDAFMKMEKFGLKIESS 109
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ L+ CK+R+ + AQ +M + GF D SYT +E + +EK+ ++ EM
Sbjct: 110 DVNRLLDTLCKSRQVERAQLVFDKMNKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEM 169
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--------- 324
+++G +P V+T I+++A K+++ +A++++ +M++ +C Y +LI
Sbjct: 170 KDEGFEPDVVTYGILINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLINGLGAEKRL 229
Query: 325 ------FILSKAVRFL----IYNTMISSAC------------------------------ 344
F LSKA F+ YN ++ + C
Sbjct: 230 SEALEFFELSKASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDII 289
Query: 345 ----VRSEEGN-ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
+R+ + A + QK+ + C+P T+ ++M C++ R+ + + + +M +
Sbjct: 290 LHHLIRAGKTKIAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVD---MAIKVWDQMKA 346
Query: 400 KGIVP 404
KGI+P
Sbjct: 347 KGILP 351
>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 537
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 147/342 (42%), Gaps = 51/342 (14%)
Query: 117 FTWAKTQTGY-MHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR 175
F WA ++ Y +P YN M++ GK ++F L W L+ ++ + N +S+ + ++RR
Sbjct: 137 FNWATSRDDYDQKSPHPYNEMIDLAGKVRQFDLAWHLI-DLMKSRNVEISIETFTILIRR 195
Query: 176 L-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS 212
D A S+++ L ++ + A F KD
Sbjct: 196 YVRAGLASEAVHCFNRMEDYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDV 255
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
++ L+ GWC+ + A+K K+M G P+ +Y+ I+ CR + +
Sbjct: 256 IVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFAD 315
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------ 326
M + GC P+ IT +M KA + + L+VY +MK C DT Y+ LI
Sbjct: 316 MLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLIETHCRDEN 375
Query: 327 LSKAVRFLIYNTMISSAC---------------VRSEEGNALKLRQKIEEDSCKPDCETH 371
L AV+ L NTMI C + + A ++ K+ E C+P+ T+
Sbjct: 376 LENAVKVL--NTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTY 433
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
++M K +VL + ++M K + P +T+++L
Sbjct: 434 NILMRMFAGSKSTD---MVLKMKKDMDDKEVEPNVNTYRLLV 472
>gi|147767583|emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
Length = 525
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 151/361 (41%), Gaps = 66/361 (18%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WAK Q + H +YN +++ L K ++F + W+ + E+D+ SL ST R L
Sbjct: 104 FLWAKDQAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQ-----NSLEPTSTTFRIL 158
Query: 177 DTRAMSV----------------------------LMDTLVKRNSVAHAYKVFLKFKDCI 208
R++S L+DTL K V A ++F + K
Sbjct: 159 IRRSVSAGLTRQAVRAFDDMSCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQRKFKF 218
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR--------- 259
+++++ +LI+GWCK + A++ + EM + G + V+Y + CR
Sbjct: 219 EANAKMYTILIYGWCKINRVSIAERLLGEMVERGJXANVVTYNVLLNGICRXASLHPDDR 278
Query: 260 -EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318
E+ R + L EM++ G +P V + +IV+H +A + L MK +
Sbjct: 279 FERTIRDAEKVLDEMRQXGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVA 338
Query: 319 FYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKI 359
Y+S++ L R YN R + NAL+L +K+
Sbjct: 339 TYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRKM 398
Query: 360 -EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
EE SC PD T+ + M RM+ +V + +M + G P ++ +L L +
Sbjct: 399 KEEYSCLPDMHTYNILVGMFVKLNRME---IVQEIWDDMKTSGAGPDLDSYTLLIHGLCE 455
Query: 419 K 419
K
Sbjct: 456 K 456
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++L+ + K + + Q+ +M G PD SYT I C ++ +++ + EM
Sbjct: 411 YNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEACHFFVEMI 470
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
EKG P IT + L ++ + LK + ++K
Sbjct: 471 EKGYLPQKITFETLYRGLIQS----DMLKTWRRLK 501
>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Glycine max]
Length = 654
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/419 (23%), Positives = 177/419 (42%), Gaps = 71/419 (16%)
Query: 85 EDHETDVDKVSEILRKRYPSPDKVVEALK---------------CFC----------FTW 119
++ +DV+KV ILRK + K+ AL+ C ++W
Sbjct: 86 DEFASDVEKVYRILRKYHSRVPKLELALRESGVVVRPGLTERVLSRCGDAGNLAYRFYSW 145
Query: 120 AKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL--- 176
A Q+G+ + Y AM++ L + ++FG +W L++E+ + + ++ +MRR
Sbjct: 146 ASKQSGHRLDHDAYKAMIKVLSRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASA 205
Query: 177 --------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD 216
D L+D L K SV A +F + S + F
Sbjct: 206 RMVHKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRYRWKPSVKHFT 265
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
L++GWCK K A+ + +M G PD V Y + Y + LKEM+ K
Sbjct: 266 SLLYGWCKEGKLMEAKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMGDAYDLLKEMRRK 325
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--- 333
C+P+ + T+++ +L K +++ EA +++ +M+++ C D YS+LI K +
Sbjct: 326 RCEPNATSYTVLIQSLCKHERLEEATRLFVEMQTNGCQADVVTYSTLISGFCKWGKIKRG 385
Query: 334 ----------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
+IY ++ + + E +L ++++ C PD + +++
Sbjct: 386 YELLDEMIQQGHFPNQVIYQHIMLAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRL 445
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK-MLAEELEKKSLGNAKERIDELLTHA 435
C +K+G+ + N EM S G+ P T M+ LE+ L A E E++
Sbjct: 446 ACKLGEVKEGIQLWN---EMESSGLSPGMDTFVIMINGFLEQGCLVEACEYFKEMVGRG 501
>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g71060, mitochondrial-like [Cucumis sativus]
Length = 542
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 169/370 (45%), Gaps = 51/370 (13%)
Query: 68 ESLKLNEQSRISSHALSEDHETDVDKVS-------EILRKRYP---SPDKVVEALKCFC- 116
+ LK +++S + S +++D E +S E L P SP +VE LK
Sbjct: 75 QDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMELSPALIVEVLKKLSN 134
Query: 117 --------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAA 168
F WA+ Q G+ HT E+YN ++EALGK K+F ++W LV ++ G +S
Sbjct: 135 AGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKR--KGILSRET 192
Query: 169 MSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS 228
+ + RR RA V +++ KF + +S F+ L+ CK+R
Sbjct: 193 FALITRRY-ARARKV--------KEAVESFEKMEKFGFQMGVSD--FNRLLDTLCKSRNV 241
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
AQ+ +M F PD SYT +E + ++++ K++ +EM+++G +P V+T I+
Sbjct: 242 KKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGIL 301
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
++A KA++ EA++++ +M++ + + +LI L R
Sbjct: 302 INAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRL--------------- 346
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
AL+ ++++ P+ T+ + C +M ++ EM G+ P T
Sbjct: 347 -KEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKM---AYAYRMVDEMRKSGVGPNSRT 402
Query: 409 HKMLAEELEK 418
+ ++ L K
Sbjct: 403 YDIILHHLIK 412
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 19/189 (10%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
+G+ TYNA+V A S K + +V E+ + G ++R +
Sbjct: 359 SGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVG-------------PNSRTYDI 405
Query: 184 LMDTLVKRNSVAHAYKVFLKFK---DC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
++ L+K AY VF + C +LS+ +D++I +C + D A + EM
Sbjct: 406 ILHHLIKGRKSKEAYSVFQRMSREPGCEPTLST--YDIMIRMFCNEERVDMAIQIWDEMK 463
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G P ++ I C E +EM + G +P + + AL +
Sbjct: 464 AKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDGRKD 523
Query: 300 EALKVYEKM 308
AL + EK+
Sbjct: 524 TALLMAEKI 532
>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Cucumis sativus]
Length = 542
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 169/370 (45%), Gaps = 51/370 (13%)
Query: 68 ESLKLNEQSRISSHALSEDHETDVDKVS-------EILRKRYP---SPDKVVEALKCFC- 116
+ LK +++S + S +++D E +S E L P SP +VE LK
Sbjct: 75 QDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMELSPALIVEVLKKLSN 134
Query: 117 --------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAA 168
F WA+ Q G+ HT E+YN ++EALGK K+F ++W LV ++ G +S
Sbjct: 135 AGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKR--KGILSRET 192
Query: 169 MSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS 228
+ + RR RA V +++ KF + +S F+ L+ CK+R
Sbjct: 193 FALITRRY-ARARKV--------KEAVESFEKMEKFGFQMGVSD--FNRLLDTLCKSRNV 241
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
AQ+ +M F PD SYT +E + ++++ K++ +EM+++G +P V+T I+
Sbjct: 242 KKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGIL 301
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
++A KA++ EA++++ +M++ + + +LI L R
Sbjct: 302 INAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRL--------------- 346
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
AL+ ++++ P+ T+ + C +M ++ EM G+ P T
Sbjct: 347 -KEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKM---AYAYRMVDEMRKSGVGPNSRT 402
Query: 409 HKMLAEELEK 418
+ ++ L K
Sbjct: 403 YDIILHHLIK 412
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 15/188 (7%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
+G+ TYNA+V A S K + +V E+ + G ++R +
Sbjct: 359 SGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVG-------------PNSRTYDI 405
Query: 184 LMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
++ L+K AY VF + + + +D++I +C + D A + EM
Sbjct: 406 ILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAK 465
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G P ++ I C E +EM + G +P + + AL + A
Sbjct: 466 GVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDGRKDTA 525
Query: 302 LKVYEKMK 309
L + EK+K
Sbjct: 526 LLMAEKIK 533
>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
Length = 370
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 129/297 (43%), Gaps = 36/297 (12%)
Query: 51 TQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVE 110
T PD + IPSL SL + Q+ + H++S V + S +R P P +
Sbjct: 80 TLPPDPTYTIPSL-----SLDFS-QTISTVHSISPSIIRHVIEQSGGVRHGIPVPQVLA- 132
Query: 111 ALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMS 170
F WA Q G+ +PE +N MV+ GK + F L W ++ ++ + + +++ S
Sbjct: 133 -----FFNWASYQDGFDKSPEAFNEMVDFAGKVRMFDLAWHVI-DLMKARDVEITVETFS 186
Query: 171 TVMRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC 207
+MRR D A S+L+ L ++ + A + F KD
Sbjct: 187 ILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRKRRASEAQEFFDSLKDK 246
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
++ L+ GWC+ A++ EM G P+ +Y+ I+ CR +
Sbjct: 247 FEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAH 306
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
EM + GC+P+ IT +M KA + + L+VY +MK C DT Y+ LI
Sbjct: 307 DVFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLI 363
>gi|15223927|ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g71060, mitochondrial; Flags: Precursor
gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Arabidopsis thaliana]
gi|332197036|gb|AEE35157.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 510
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 172/392 (43%), Gaps = 85/392 (21%)
Query: 65 SWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQT 124
S VE+L LNE S S AL + E+L+K + L F WA+ Q
Sbjct: 79 SKVETL-LNEASVKLSPAL----------IEEVLKKLSNAG-----VLALSVFKWAENQK 122
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G+ HT YNA++E+LGK K+F L+W LV ++ + +S + + RR
Sbjct: 123 GFKHTTSNYNALIESLGKIKQFKLIWSLVDDMK--AKKLLSKETFALISRRY-------- 172
Query: 185 MDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+ V A F K ++ + S F+ ++ K+R AQK +M + F
Sbjct: 173 ----ARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRF 228
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD SYT +E + +E + +VD +EM+++G +P V+ I+++A KAK+ EA++
Sbjct: 229 EPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIR 288
Query: 304 VYEKMKSDDCLTDTSFYSSLI---------------FILSKAVRFLI----YNTMISSAC 344
+ +M+ +C + SLI F SK+ F + YN ++ + C
Sbjct: 289 FFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYC 348
Query: 345 VRSEEGNALK------------------------LRQKIEED--------SCKPDCETHA 372
+A K +R + ++ SC+P T+
Sbjct: 349 WSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCEPTVSTYE 408
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
++M C+K+R+ + + + EM KG++P
Sbjct: 409 IMVRMFCNKERLD---MAIKIWDEMKGKGVLP 437
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/332 (20%), Positives = 131/332 (39%), Gaps = 50/332 (15%)
Query: 97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWEL---- 152
++ +RY KV EA+ F + G+ +N M++ L KS+ G ++
Sbjct: 167 LISRRYARARKVKEAIGAFH---KMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKM 223
Query: 153 --------VKEIDELSNGY---VSLAAMSTVMRRL-------DTRAMSVLMDTLVKRNSV 194
+K L G+ ++L + V R + D A ++++ K
Sbjct: 224 KKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKY 283
Query: 195 AHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
A + F ++ ++C S IF LI+G +K + A + + GF + +Y
Sbjct: 284 EEAIRFFNEMEQRNC-KPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNA 342
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
+ YC + T+ EM+ KG P+ T I++H L + ++ EA +VY+ M +
Sbjct: 343 LVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCEP 402
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
++ Y M+ C + A+K+ +++ P +
Sbjct: 403 TVS-------------------TYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFS 443
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ CH+ ++ + N EML GI P
Sbjct: 444 SLITALCHENKLDEACEYFN---EMLDVGIRP 472
>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
Length = 491
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 134/271 (49%), Gaps = 36/271 (13%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFK-----DCISLSSQIFDVLIHGWCKTRKSDYA 231
D ++ + ++D L K V AY +F FK DC+S ++V+++GWC ++++ A
Sbjct: 170 DLQSFNTILDVLCKSKRVEMAYNLFKVFKGKFRADCVS-----YNVMVNGWCLIKRTNKA 224
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV-DYTLKEMQEKGCKPSVITCTIVMH 290
+ +KEM + G +P+ SY ++ Y R + D+ L EM+++ C+ VIT T V+H
Sbjct: 225 LEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFL-EMKKRDCEIDVITYTTVIH 283
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------AVRF---------- 333
A +I A KV++ M L + Y++ I +L K V F
Sbjct: 284 GFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVP 343
Query: 334 --LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+ YN +I C R E A++ ++++D C+P+ +T+ ++ C + + L
Sbjct: 344 NSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKA---L 400
Query: 392 NLMREMLSKGIVPQESTHKML--AEELEKKS 420
+L ++M S +P T+ +L A + KKS
Sbjct: 401 DLFQKMTSGDCLPNLDTYNILISAMFVRKKS 431
>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
Length = 497
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 143/329 (43%), Gaps = 44/329 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI------------DELSNGYVSLAAMS---TVMRRL 176
TY +V+ L K K WE+++E+ + L +G +S +MR +
Sbjct: 150 TYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDM 209
Query: 177 DTRAMS-------VLMDTLVKRNSVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKS 228
R + L+D L K V A + D I+++LI+G CK +
Sbjct: 210 TCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQV 269
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D + ++ G PD V+Y+ I CR + L ++ +GC P VI + +
Sbjct: 270 DESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTL 329
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAVRF-- 333
+ L KA ++ EA +YE M D C D YS+LI +L++ VR
Sbjct: 330 IDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGT 389
Query: 334 ----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ YN++I C + A++L +++E +C P T+ + C +R+
Sbjct: 390 PPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSA-- 447
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEK 418
L+ +EM+ G++P T+ +L E L+K
Sbjct: 448 ALDYFQEMIDNGVIPDHITYSILLEGLKK 476
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 134/317 (42%), Gaps = 38/317 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +++ L ++ K L +E+ + R D + ++L+ L +
Sbjct: 47 TYNTLLDGLFRTGKLERAMALFQEMLD--------------RRSHDVISFNILVTGLCRA 92
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
+ A + F K D S + + VLI G CK + A + ++ M G SPD ++YT
Sbjct: 93 GKIETALEFFRKMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYT 152
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
++ C+E L+EM + GC P+++T ++H L +A+++ +AL + M
Sbjct: 153 ILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCR 212
Query: 312 DCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRSEEGNA 352
C + Y +LI L K R +IYN +I+ C + +
Sbjct: 213 GCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDES 272
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ L ++ KPD T++ + C R+ + +L ++ S+G P + L
Sbjct: 273 IALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVK---SRGCPPDVILYSTL 329
Query: 413 AEELEKKSLGNAKERID 429
+ L K G E D
Sbjct: 330 IDGLCKA--GKVDEAFD 344
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 100/231 (43%), Gaps = 26/231 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G CK + D AQ+ + M SP V+Y ++ R + +EM
Sbjct: 13 YNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEML 72
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
++ VI+ I++ L +A +I AL+ + KM D C + YS LI L KA R
Sbjct: 73 DRR-SHDVISFNILVTGLCRAGKIETALEFFRKM-DDRCSPNVITYSVLIDGLCKANRVS 130
Query: 333 -----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ Y ++ C S+ A ++ +++ + C P+ T+ L
Sbjct: 131 QAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLL 190
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
C +R+ D L LMR+M +G P T+ L + L K +G K+
Sbjct: 191 HGLCRARRVSDA---LALMRDMTCRGCTPNVVTYGTLIDGLCK--VGRVKD 236
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D S L+D L K V A+ + + + S+ ++ LI G C D A + +
Sbjct: 357 DVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELV 416
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREK--DFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
+EM + +P V+Y I CR + D +DY +EM + G P IT +I++ L+
Sbjct: 417 EEMERSNCAPSAVTYNILIHGMCRMERVDSAALDY-FQEMIDNGVIPDHITYSILLEGLK 475
Query: 294 KAKQIYE 300
K+K ++E
Sbjct: 476 KSKDLHE 482
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQ-KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY- 268
S+ +++LIHG C+ + D A +EM +G PD ++Y+ +E + KD ++ +
Sbjct: 427 SAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHL 486
Query: 269 TLKEMQEKG 277
L +M + G
Sbjct: 487 VLDQMVQLG 495
>gi|255579531|ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529856|gb|EEF31788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 596
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 130/300 (43%), Gaps = 48/300 (16%)
Query: 73 NEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEAL-----------------KCF 115
N R +S + ++ DV+KV ILR + K+ AL +C
Sbjct: 58 NTSDRDNSSSKVDEFAKDVEKVYRILRNFHSRVPKLELALQESGVTMRAGLTERVLNRCG 117
Query: 116 --------CFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLA 167
F WA Q GY H+ E Y AMV+ K ++FG +W L++E+ + ++ ++
Sbjct: 118 DAGNLGYRFFVWASKQPGYRHSYENYKAMVKIFSKMRQFGAVWALLEEMRKDNSVLITSE 177
Query: 168 AMSTVMRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKF 204
++RR D L+D L K SV A +F
Sbjct: 178 LFIVLIRRFASARLVEKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKQAASLFEDM 237
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
+ S S + F L++GWC+ K A+ + +M + GF PD V + + Y
Sbjct: 238 RVRFSPSLRHFTSLLYGWCREGKLIEAKHVLVQMREAGFEPDIVVFNNLLSAYSMAGKMT 297
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
LKEM KGC+P+ + TI++ A +++ EA++V+ +M+ C D Y++LI
Sbjct: 298 DAFDLLKEMVRKGCEPNANSYTIMIQAFCSQEKMDEAMRVFVEMERTGCEADVVTYTALI 357
>gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Vitis vinifera]
Length = 476
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 152/354 (42%), Gaps = 58/354 (16%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA Q Y H+ Y+ M+E+L K +++ +MW+LV ++ L +++ +MR+
Sbjct: 64 FEWAGKQRNYTHSIRAYHTMIESLAKIRQYQIMWDLVNKMRSLK--ILNVETFCIIMRKY 121
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+ A + L+ L K +V A ++F KD S+
Sbjct: 122 ARSQKVKEAVYTFNIMEKYDVPPNLAAFNSLLSALCKSKNVVKAQEIFNGMKDQFIPDSK 181
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ +L+ GW K A++ +EM G PD V+Y ++ C+ + +KEM
Sbjct: 182 TYSILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTYGIMVDILCKAGRVDEAVGIVKEM 241
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
CKP+ ++++H +I +A+ + M+ ++ D + Y++LI K +
Sbjct: 242 DSSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKL 301
Query: 334 -----------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+I N++IS C ++E + R+ I+ C PD +T
Sbjct: 302 KNAYRVLNEMDCKGIRPNSRTCNIILNSLIS--CGDTDEAFRV-FRRMIK--VCDPDADT 356
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNA 424
+ +KM C +++ + V MR K VP T +L L KK GNA
Sbjct: 357 YTMMIKMFCENDKLEMALKVWKYMR---LKQFVPSMHTFSVLINGLCKK--GNA 405
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
YNA++ A K +++L N Y L M R ++R ++++++L+
Sbjct: 287 VYNALIGAFCK-------------VNKLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISC 333
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
A++VF + + + ++I +C+ K + A K K M F P +++
Sbjct: 334 GDTDEAFRVFRRMIKVCDPDADTYTMMIKMFCENDKLEMALKVWKYMRLKQFVPSMHTFS 393
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
I C++ + K L+EM EKG +PS +T
Sbjct: 394 VLINGLCKKGNASKACILLEEMIEKGIRPSSVT 426
>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 133/314 (42%), Gaps = 34/314 (10%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA + H+PE Y M++ GK+ GL E V + M +
Sbjct: 133 FNWATNLEEFGHSPEPYMEMIDLAGKA---GLAAEAVHAFNR----------MEDYGCKP 179
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
D A SV++ +L K+ A F KD ++ L+HGWC+ A++
Sbjct: 180 DKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFG 239
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM G P+ +Y+ I+ CR + EM + GC P+ IT +M KA
Sbjct: 240 EMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAG 299
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFI------LSKAVRFL------------IYNT 338
+ + L+VY +MK C D Y+ LI L +AV+ L +N
Sbjct: 300 RTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNP 359
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+ + +A ++ K+++ C+P+ T+ ++M KK +VL L +EM
Sbjct: 360 IFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTD---MVLKLRKEMD 416
Query: 399 SKGIVPQESTHKML 412
I P +T+++L
Sbjct: 417 ENEIEPNANTYRVL 430
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 2/142 (1%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKA 234
L+ + + + + K V A+++F K KD + + +++L+ + + +D K
Sbjct: 352 LNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKL 411
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC-KPSVITCTIVMHALE 293
KEM ++ P+ +Y I +C + KEM E+ C +PS+ +V+ L
Sbjct: 412 RKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLR 471
Query: 294 KAKQIYEALKVYEKMKSDDCLT 315
KA Q+ + ++ EKM + +T
Sbjct: 472 KAGQLKKHEELVEKMVNRGFVT 493
>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Glycine max]
Length = 461
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/381 (23%), Positives = 163/381 (42%), Gaps = 58/381 (15%)
Query: 104 SPDKVVEALKCF---------CFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVK 154
SPD V LK F F WA+ Q GY H+ Y+ M+E+L K +++ ++W+LV
Sbjct: 43 SPDLVENVLKRFENAGMPAFRFFEWAEKQRGYSHSIRAYHLMIESLAKIRQYQIVWDLVS 102
Query: 155 EIDELSNGYVSLAAMSTVMRRL-----------------------DTRAMSVLMDTLVKR 191
+ + G +++ +MR+ + A + L+ L K
Sbjct: 103 AMRK--KGMLNVETFCIMMRKYARANKVDEAVYTFNVMDKYDVVPNLAAFNGLLSALCKS 160
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
N+V A ++F K + + +L+ GW K A++ +EM + G PD V+Y
Sbjct: 161 NNVRKAQEIFDAMKGQFVPDEKSYSILLEGWGKAPNLPRAREVFREMVEAGCDPDVVTYG 220
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
++ C+ + +KEM C+P+ ++++H +I +A+ + +M
Sbjct: 221 IMVDVLCKAGRVDEAVEVVKEMDVGNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKK 280
Query: 312 DCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGNA 352
D Y++LI K +F N +ISS + + A
Sbjct: 281 GIKADVVAYNALIGAFCKVNKFKNVHRVLKEMESNGVAPNSRTCNVIISSMIGQGQTDRA 340
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
++ ++ + C+PD +T+ +KM C K ++ + L + + M SK VP T L
Sbjct: 341 FRVFCRMIK-LCEPDADTYTMMIKMFCEKNELE---MALKIWKYMKSKQFVPSMHTFSAL 396
Query: 413 AEEL-EKKSLGNAKERIDELL 432
+ L EK + A ++E++
Sbjct: 397 IKGLCEKDNAAKACVVMEEMI 417
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 162/412 (39%), Gaps = 56/412 (13%)
Query: 38 ELTGLPSWLKFFDTQSPDEDFV--IPSLASWVESLKLNEQSRISSHALSEDHETDVDKVS 95
E G+P++ +FF+ + I + +ESL Q +I +S + + V
Sbjct: 55 ENAGMPAF-RFFEWAEKQRGYSHSIRAYHLMIESLAKIRQYQIVWDLVSAMRKKGMLNVE 113
Query: 96 E--ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPE--TYNAMVEALGKSKKFGLMWE 151
I+ ++Y +KV EA+ F Y P +N ++ AL KS E
Sbjct: 114 TFCIMMRKYARANKVDEAVYTF-----NVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQE 168
Query: 152 LVKEI------DELSNGYV--------SLAAMSTVMRRL-------DTRAMSVLMDTLVK 190
+ + DE S + +L V R + D +++D L K
Sbjct: 169 IFDAMKGQFVPDEKSYSILLEGWGKAPNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCK 228
Query: 191 RNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
V A +V + +C +S I+ VL+H + + + A EM + G D V
Sbjct: 229 AGRVDEAVEVVKEMDVGNC-RPTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKKGIKADVV 287
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+Y I +C+ F+ V LKEM+ G P+ TC +++ ++ Q A +V+ +M
Sbjct: 288 AYNALIGAFCKVNKFKNVHRVLKEMESNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRM 347
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
C D Y+ MI C ++E ALK+ + ++ P
Sbjct: 348 -IKLCEPDADTYT----------------MMIKMFCEKNELEMALKIWKYMKSKQFVPSM 390
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
T + +K C K +V M EM+ KGI P T L + L K+
Sbjct: 391 HTFSALIKGLCEKDNAAKACVV---MEEMIEKGIRPSRITFGRLRQLLIKEG 439
>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 547
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 154/338 (45%), Gaps = 45/338 (13%)
Query: 104 SPDKVVEALKCFC---------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVK 154
SP VVE LK FTWA+ Q G+ + E+YNA++EALGK K+F L+ LV
Sbjct: 122 SPSLVVEVLKRLSNAGVIALSFFTWAEKQKGFKYNTESYNALIEALGKIKQFKLIRSLVN 181
Query: 155 EIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQ 213
E+ S ++ + + RR RA V A + F + ++ L +
Sbjct: 182 EMK--SRKLLNKDTFALISRR-HARA-----------RKVEEAIEAFERMEEFGFKLETS 227
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F+ L+ CK+R + A K +M + F PD SYT +E + +E + ++D EM
Sbjct: 228 DFNRLLDTLCKSRHVEKANKVFDKMKKRRFVPDIKSYTILLEGWGKEHNLLRLDEVYLEM 287
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF------IL 327
+ G +P V+T I++ A KAK+ A++++ +M++ +C Y +LI L
Sbjct: 288 KYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNCKPTPHVYCTLINGLGSEKRL 347
Query: 328 SKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
S+A+ F YN+++ + C +A ++ ++ + S P+ T+
Sbjct: 348 SEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGPNSRTYDII 407
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
L +R + M G P ST++++
Sbjct: 408 LHHLIKARRTNEAYFRFQKMSN--EPGCEPTVSTYEII 443
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 122/296 (41%), Gaps = 47/296 (15%)
Query: 87 HETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQT--------------GYMHTPET 132
H +KV + ++KR PD +++ W K G+ T
Sbjct: 241 HVEKANKVFDKMKKRRFVPD--IKSYTILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVVT 298
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
Y ++ A K+KK+ EL E+ E N + T L++ L
Sbjct: 299 YGILISAYCKAKKYDAAIELFHEM-EAKNCKPTPHVYCT------------LINGLGSEK 345
Query: 193 SVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
++ A + F +FK C + + ++ L+ +C + + D A + + EM +H P+ +Y
Sbjct: 346 RLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGPNSRTYD 405
Query: 252 CFIEHYCREKDFRKVDYTLKEM-QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ H + + + + ++M E GC+P+V T I++ ++ A +V+++MK+
Sbjct: 406 IILHHLIKARRTNEAYFRFQKMSNEPGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKA 465
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
L YS L I+S C +++ G A K Q++ + +P
Sbjct: 466 KGVLPGMHMYSDL----------------ITSLCHKNKLGEACKYFQEMLDAGIRP 505
>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g77360, mitochondrial; Flags: Precursor
gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 517
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 145/341 (42%), Gaps = 46/341 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F W++ Q Y H+ Y+ M+E+ K +++ LMW+L+ + + +++ VMR+
Sbjct: 121 FQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRK--KKMLNVETFCIVMRKY 178
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+ A + L+ L K +V A +VF +D + S+
Sbjct: 179 ARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSK 238
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ +L+ GW K A++ +EM G PD V+Y+ ++ C+ + ++ M
Sbjct: 239 TYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSM 298
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR- 332
CKP+ ++++H ++ EA+ + +M+ D + ++SLI KA R
Sbjct: 299 DPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRM 358
Query: 333 ---FLIYNTMISSACVRSEEGNALKLRQKIEEDS--------------CKPDCETHARSL 375
+ + M S + + + LR IE C+PD +T+ +
Sbjct: 359 KNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEPDADTYTMVI 418
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
KM C KK M+ V MR+ KG+ P T +L L
Sbjct: 419 KMFCEKKEMETADKVWKYMRK---KGVFPSMHTFSVLINGL 456
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 88/191 (46%), Gaps = 16/191 (8%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
+ +L Y + +++ EA+ F ++G +N+++ A K+ + ++ ++
Sbjct: 309 IYSVLVHTYGTENRLEEAVDTFL---EMERSGMKADVAVFNSLIGAFCKANRMKNVYRVL 365
Query: 154 KEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
KE+ S G ++++ ++++ L++R A+ VF K +
Sbjct: 366 KEMK--SKGVTP-----------NSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEPDAD 412
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ ++I +C+ ++ + A K K M + G P +++ I C E+ +K L+EM
Sbjct: 413 TYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEM 472
Query: 274 QEKGCKPSVIT 284
E G +PS +T
Sbjct: 473 IEMGIRPSGVT 483
>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
Length = 481
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 145/341 (42%), Gaps = 46/341 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F W++ Q Y H+ Y+ M+E+ K +++ LMW+L+ + + +++ VMR+
Sbjct: 85 FQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRK--KKMLNVETFCIVMRKY 142
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+ A + L+ L K +V A +VF +D + S+
Sbjct: 143 ARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSK 202
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ +L+ GW K A++ +EM G PD V+Y+ ++ C+ + ++ M
Sbjct: 203 TYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSM 262
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR- 332
CKP+ ++++H ++ EA+ + +M+ D + ++SLI KA R
Sbjct: 263 DPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRM 322
Query: 333 ---FLIYNTMISSACVRSEEGNALKLRQKIEEDS--------------CKPDCETHARSL 375
+ + M S + + + LR IE C+PD +T+ +
Sbjct: 323 KNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEPDADTYTMVI 382
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
KM C KK M+ V MR+ KG+ P T +L L
Sbjct: 383 KMFCEKKEMETADKVWKYMRK---KGVFPSMHTFSVLINGL 420
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 88/191 (46%), Gaps = 16/191 (8%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
+ +L Y + +++ EA+ F ++G +N+++ A K+ + ++ ++
Sbjct: 273 IYSVLVHTYGTENRLEEAVDTF---LEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVL 329
Query: 154 KEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
KE+ S G ++++ ++++ L++R A+ VF K +
Sbjct: 330 KEMK--SKGVTP-----------NSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEPDAD 376
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ ++I +C+ ++ + A K K M + G P +++ I C E+ +K L+EM
Sbjct: 377 TYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEM 436
Query: 274 QEKGCKPSVIT 284
E G +PS +T
Sbjct: 437 IEMGIRPSGVT 447
>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 565
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 107/417 (25%), Positives = 177/417 (42%), Gaps = 91/417 (21%)
Query: 55 DEDF-VIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALK 113
D+DF V+P L ++E++ LS E V + L SP V E LK
Sbjct: 100 DQDFTVVPG-----PGLDVSEEAERVCRVLSTLPEPRVPAALDALGASV-SPQLVAEVLK 153
Query: 114 CFC---------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV 164
F WA+ Q G+++T ++++ ++EALGK K+F L+W LV+ + G +
Sbjct: 154 NLSNAGILALAFFRWAERQQGFVYTADSFHNLIEALGKIKQFRLVWSLVEAMR--CRGLL 211
Query: 165 SLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV--LIHGW 222
S ++RR + V A + F K L + + D LI
Sbjct: 212 SKDTFRLIVRR------------YARARKVKEAVETFEKMAG-FGLKADLSDYNWLIDVL 258
Query: 223 CKTRKSDYAQKAMKEMFQHG-FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
K+++ A KEM ++G F PD +YT +E + EKD + +EM + G +P
Sbjct: 259 SKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGLQPD 318
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------------FI 326
V+ +++ + K+ + EA+KV+ +M+++ C+ Y LI F
Sbjct: 319 VVAYGMLISSFCKSGKCDEAIKVFREMETNGCMPSPHVYCMLINGLGSEERLDEALKYFE 378
Query: 327 LSKAVRFLIY----NTMISSACVRSEEGNALKL-------------------------RQ 357
LSKA F + N ++ + C S+ +A K+ Q
Sbjct: 379 LSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKSGIGPNSRTYDIILHHLIKSQ 438
Query: 358 KIEE----------DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
KIEE D C+P T+ + M C +R+ + V N M+E KG++P
Sbjct: 439 KIEEAYNVFQGMSKDGCEPQLNTYTMMVGMFCSNERVDVALKVWNQMKE---KGVLP 492
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 81/366 (22%), Positives = 143/366 (39%), Gaps = 56/366 (15%)
Query: 97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPET--YNAMVEALGKSKKFGLMWELVK 154
++ +RY KV EA++ F + G+ + YN +++ L KSK+ + K
Sbjct: 218 LIVRRYARARKVKEAVETF-----EKMAGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFK 272
Query: 155 EIDELSNGYVSLAAMSTVMR-----------------------RLDTRAMSVLMDTLVKR 191
E+ L + +M + D A +L+ + K
Sbjct: 273 EMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGLQPDVVAYGMLISSFCKS 332
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
A KVF ++ C+ S ++ +LI+G + D A K + GF + +
Sbjct: 333 GKCDEAIKVFREMETNGCMP-SPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPT 391
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
+ YCR F+ + EM++ G P+ T I++H L K+++I EA V++ M
Sbjct: 392 CNAVVGAYCRSSKFQHAFKMVDEMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMS 451
Query: 310 SDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
D C + Y M+ C ALK+ +++E P
Sbjct: 452 KDGCEPQLN----------------TYTMMVGMFCSNERVDVALKVWNQMKEKGVLPCMH 495
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKE-- 426
+ + C + R+++ +EML +GI P L E L E + A+E
Sbjct: 496 MFSALINGLCFENRLEE---ACAYFQEMLDRGIRPPGQLFSNLKEALIEGGRISLAQEMA 552
Query: 427 -RIDEL 431
++DEL
Sbjct: 553 LKLDEL 558
>gi|357520891|ref|XP_003630734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524756|gb|AET05210.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 520
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 149/346 (43%), Gaps = 46/346 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------------ 158
F WAK+ G+ H+ ++++ +VE LG+SK+F ++W+ + E E
Sbjct: 94 FLWAKSIPGFQHSVQSFHILVEILGRSKQFAILWDFLIETRESDSSCKITNEIFWIIFTA 153
Query: 159 -----LSNGYV-SLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS 212
L +G + S M + + +L+ TL K+ V A + F + K L++
Sbjct: 154 YSRADLPDGAIRSFVRMDEFGIKPSIIDVDLLLYTLCKKKHVRQAQQFFDQVKSHFLLTT 213
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
+ + +LI+GW K S A++ M + G D ++Y +E C+ + L +
Sbjct: 214 KTYSILINGWGKIGDSGKARELFDAMLEQGCHVDLLAYNNLLEALCKGGHVDEAMDFLND 273
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M K +P T +I + + A ++ A V +KM+ + L + Y+ +I L K +
Sbjct: 274 MLSKKVEPDAFTYSIFIRSYCDANNVHSAFGVLDKMRRCNLLPNVFTYNCIIKRLCKIKK 333
Query: 333 ----FLIYNTMISSA---------------CVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
+ + + MISS C E ALKL ++E+D C PD T+
Sbjct: 334 VEEAYQLLDEMISSGLKPDTWSYNAIQAYHCDHCEVNRALKLISRMEKDVCFPDRHTYNM 393
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
LK+ R V M + K P ST+ ++ L KK
Sbjct: 394 VLKLLIRIGRFDKATEVWECMGD---KKFYPSVSTYSVMIHGLCKK 436
>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/359 (22%), Positives = 160/359 (44%), Gaps = 49/359 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA+ Q Y H+ + ++ ++++L K +++ LMW++VK + S V++ +MR+
Sbjct: 43 FEWAEKQRHYNHSVKAFHTVIDSLAKIRQYQLMWDVVKVMK--SKRMVNVETFCIIMRKY 100
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+ A + L+ L K +V A ++F KD S+
Sbjct: 101 ARAQKVEEAVYTFNIMDKYDVPPNLAAFNGLLSALCKSKNVRKAQEIFDSIKDRFVPDSK 160
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ +L+ GW K A++ +EM +G PD V+Y ++ C+ + + EM
Sbjct: 161 TYSILLEGWGKDPNLPKAREIFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEM 220
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
CKP+ ++++H +I +A+ + +M+++ D + Y++LI KA R
Sbjct: 221 DSTVCKPTPFIYSVLVHTYGIENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRL 280
Query: 334 -------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
+N ++SS R E A ++ ++ + C+PD +T+
Sbjct: 281 KNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGETDEAYRVFLRMIK-VCEPDADTYTMM 339
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELL 432
+KM C + +K + V M+ K +P T ++L L EK + A ++E++
Sbjct: 340 IKMFCERDELKKALKVWKYMK---LKRFMPSMHTFQVLINGLCEKGDVTQACVLLEEMI 395
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
YNA++ A K+ + ++ ++ E+D G ++R ++++ +L+ R
Sbjct: 266 VYNALIGAFCKANRLKNVYRVLNEMD--CKGVTP-----------NSRTFNIILSSLIGR 312
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
AY+VFL+ + + ++I +C+ + A K K M F P ++
Sbjct: 313 GETDEAYRVFLRMIKVCEPDADTYTMMIKMFCERDELKKALKVWKYMKLKRFMPSMHTFQ 372
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
I C + D + L+EM EKG +PS +T
Sbjct: 373 VLINGLCEKGDVTQACVLLEEMIEKGIRPSGVT 405
>gi|449469288|ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Cucumis sativus]
Length = 529
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 140/361 (38%), Gaps = 77/361 (21%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVS-------LAAM 169
F WAK G+ + ++Y+ +V+ LG S +F ++W+ + EI E + ++ A
Sbjct: 102 FLWAKRIPGFEPSDDSYHIVVDILGSSGQFAILWDFLIEIRETRSSVITHELFWHVFTAY 161
Query: 170 STV------------MRRLDTRA----MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
S M RA + L+ TL KR VAHA + F K K + S +
Sbjct: 162 SRADLPQDAIRAFNRMGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDKVKSVFNPSVK 221
Query: 214 IFDVLIHGW-----------------------------------CKTRKSDYAQKAMKEM 238
+ +L GW CK K D A K EM
Sbjct: 222 TYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEM 281
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
+G PD +Y+ FI C+E D V L+ + K P+V T V+ L K + +
Sbjct: 282 DSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNV 341
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK 358
EA ++ ++M DT YN + + C SE +AL L ++
Sbjct: 342 EEAYQILDEMIERGVTPDT----------------WSYNAIQAYHCDHSEVNSALNLVKR 385
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
++ D C PD T+ LK+ R V M +G P ST+ ++ K
Sbjct: 386 MDRDKCVPDKHTYNMVLKLLVRVGRFDRANEV---WESMGKRGFYPSVSTYAVMIHGFCK 442
Query: 419 K 419
K
Sbjct: 443 K 443
>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
Length = 428
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 113/245 (46%), Gaps = 26/245 (10%)
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
L + I++ LI G CK RK +A + + M +G+ V+YT I+ C+ D
Sbjct: 8 LDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQAL 67
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
L++M + GC P+V+T T ++ L KA++ ++A++ ++M C D Y+SLI L
Sbjct: 68 LQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCM 127
Query: 330 AVRF--------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
A R + YNT IS C + L++ ++++ PD
Sbjct: 128 ANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVV 187
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
T + C R+ D V + ML +G VP T+ ++ + L + N + ++
Sbjct: 188 TFCSIISGLCKANRIDDAFQVF---KGMLERGCVPDSLTYSIMLDNLSR---ANRLDTVE 241
Query: 430 ELLTH 434
E+L H
Sbjct: 242 EVLEH 246
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 90/393 (22%), Positives = 143/393 (36%), Gaps = 92/393 (23%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKE----------------IDELSNGYVSLA 167
GY + TY +++ L KS L+++ ID L
Sbjct: 39 NGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHD 98
Query: 168 AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAY-------KVFLKFKDCISLSSQIFDVL-- 218
A+ TV R L + LV NS+ H L ++ + S +I DV+
Sbjct: 99 AIQTVKRMLRSGCEP----DLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTY 154
Query: 219 ---IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
I G CK K D + ++EM + G SPD V++ I C+ K M E
Sbjct: 155 NTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLE 214
Query: 276 KGCKPSVITCTIVM-----------------------------------HALEKAKQIYE 300
+GC P +T +I++ HAL +A I
Sbjct: 215 RGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIES 274
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMIS 341
A YE+ C+ + +++ I L ++ +F L YN +I
Sbjct: 275 ASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVID 334
Query: 342 SACVRSEEGNALKL-RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
C +A KL R+ ++ CKPD + C R+ L++EM +K
Sbjct: 335 GLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQ---QLLKEMKAK 391
Query: 401 GI-VPQESTHKMLAEELEK-KSLGNAKERIDEL 431
I VP T+ + + K SL AK ++E+
Sbjct: 392 NICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEM 424
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 19/190 (10%)
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
F D Y I C+ + R L M G SV+T T ++ L K+ + A
Sbjct: 6 FRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQ 65
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362
+ +KM C + Y++LI L KA R +A++ +++
Sbjct: 66 ALLQKMADAGCAPNVVTYTALIDGLCKARR----------------PHDAIQTVKRMLRS 109
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-L 421
C+PD T+ + C RM D LVL + M+ G +P T+ L K L
Sbjct: 110 GCEPDLVTYNSLIHGLCMANRMDDAGLVLQEL--MIESGRIPDVVTYNTFISGLCKAGKL 167
Query: 422 GNAKERIDEL 431
E ++E+
Sbjct: 168 DKGLEMLEEM 177
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 19/166 (11%)
Query: 118 TWAKTQT---GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR 174
+WA Q G + T+NA + AL +S KF L ++ G + ++ ++
Sbjct: 276 SWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILL-------GMIESGSLPNLL- 327
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQ 232
+ + ++D L K +V A+K+ K D C F+ LI G+CK + AQ
Sbjct: 328 -----SYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQ 382
Query: 233 KAMKEMFQHGFS-PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
+ +KEM PD V+Y I+ + ++ L+EMQ G
Sbjct: 383 QLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAVG 428
>gi|449484422|ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Cucumis sativus]
Length = 529
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 140/361 (38%), Gaps = 77/361 (21%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVS-------LAAM 169
F WAK G+ + ++Y+ +V+ LG S +F ++W+ + EI E + ++ A
Sbjct: 102 FLWAKRIPGFEPSDDSYHIVVDILGGSGQFAILWDFLIEIRETRSSVITHELFWHVFTAY 161
Query: 170 STV------------MRRLDTRA----MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
S M RA + L+ TL KR VAHA + F K K + S +
Sbjct: 162 SRADLPQDAIRAFNRMGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDKVKSVFNPSVK 221
Query: 214 IFDVLIHGW-----------------------------------CKTRKSDYAQKAMKEM 238
+ +L GW CK K D A K EM
Sbjct: 222 TYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEM 281
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
+G PD +Y+ FI C+E D V L+ + K P+V T V+ L K + +
Sbjct: 282 DSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNV 341
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK 358
EA ++ ++M DT YN + + C SE +AL L ++
Sbjct: 342 EEAYQILDEMIERGVTPDT----------------WSYNAIQAYHCDHSEVNSALNLVKR 385
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
++ D C PD T+ LK+ R V M +G P ST+ ++ K
Sbjct: 386 MDRDKCVPDKHTYNMVLKLLVRVGRFDRANEV---WESMGKRGFYPSVSTYAVMIHGFCK 442
Query: 419 K 419
K
Sbjct: 443 K 443
>gi|224111364|ref|XP_002315827.1| predicted protein [Populus trichocarpa]
gi|222864867|gb|EEF01998.1| predicted protein [Populus trichocarpa]
Length = 472
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 136/326 (41%), Gaps = 49/326 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALG----KSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
F WA Q Y H P YN M++ L K+++F ++ +++ + + V + + T+
Sbjct: 50 FMWAGHQKNYSHEPCAYNEMIDILTSTKYKARQFRIVCDMLDYMKRNNKNVVPVEVLLTI 109
Query: 173 MR-------------------RLDTR----AMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209
+R R+ T+ A ++L+D L K A +F + K+ +
Sbjct: 110 LRNYTEKYLTRVQKFAKKKRIRVKTQPEINAFNLLLDALCKCCLAEDAEGLFKRVKNKVK 169
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+ ++V+ GWC+ R K ++EM Q G +PD +Y I+ +CR +
Sbjct: 170 PDANTYNVMFFGWCRVRNPTRGMKVLEEMIQLGHTPDSFTYITAIDAFCRAGMVNEAAEL 229
Query: 270 LKEMQEKG---CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
+ M+ KG P+ T I++ AL + ++ E K+ E M + CL D S + L
Sbjct: 230 FEFMRTKGSTMSSPTAKTYAIMIGALVRNNRMDECFKLLEDMINSGCLPDVSTFKEL--- 286
Query: 327 LSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
I C + A + Q++ PD T+ LK+ C K ++
Sbjct: 287 -------------IEGMCSAGKIDEAYRFLQEMGNKGYPPDIVTYNCFLKVLCENKNSEE 333
Query: 387 GMLVLNLMREMLSKGIVPQESTHKML 412
L L M+ G P TH ML
Sbjct: 334 A---LRLYERMIEAGCFPSVQTHNML 356
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 13/200 (6%)
Query: 128 HTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
HTP+ TY ++A ++ +V E EL + + + M + ++++
Sbjct: 203 HTPDSFTYITAIDAFCRAG-------MVNEAAEL---FEFMRTKGSTMSSPTAKTYAIMI 252
Query: 186 DTLVKRNSVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
LV+ N + +K+ + L F LI G C K D A + ++EM G+
Sbjct: 253 GALVRNNRMDECFKLLEDMINSGCLPDVSTFKELIEGMCSAGKIDEAYRFLQEMGNKGYP 312
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD V+Y CF++ C K+ + + M E GC PSV T +++ + A +
Sbjct: 313 PDIVTYNCFLKVLCENKNSEEALRLYERMIEAGCFPSVQTHNMLISMFFEMGDPDGAFET 372
Query: 305 YEKMKSDDCLTDTSFYSSLI 324
+ +M C D Y +I
Sbjct: 373 WYEMDKRGCAQDVDTYIVMI 392
>gi|224118166|ref|XP_002317747.1| predicted protein [Populus trichocarpa]
gi|222858420|gb|EEE95967.1| predicted protein [Populus trichocarpa]
Length = 498
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 152/338 (44%), Gaps = 38/338 (11%)
Query: 121 KTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRA 180
K + G + ++N +++AL K +++ N M T+ +
Sbjct: 149 KDKYGVLPNVFSFNILIKALCKK-------------NDVENALKVFDEMPTMGMIPNLVT 195
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISL-SSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ ++ V R + +A KVF + D L + + VL+ G+CK + A K M M
Sbjct: 196 YTTILGGFVSRGDLVNAEKVFSEISDKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNME 255
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+G P+ V+Y I+ YC+EK + + +M +K PS C V+ L + ++
Sbjct: 256 YNGVEPNEVTYGVMIDAYCKEKKSGEARNLIDDMLDKKFLPSSTLCCKVIDVLCEDGKVE 315
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR------------------FLIYNTMIS 341
A ++++M +CL D + S+LI L K + + YNT+I+
Sbjct: 316 NACHLWKRMLEKNCLPDNAIMSTLIHWLCKEGKVWEARKLFDEFEQGTIPSLMTYNTLIA 375
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C R E A +L + E C+P+ T+ +K +K+G+ +L EML G
Sbjct: 376 GMCERGELNEAGRLWDDMVEKRCRPNAFTYNMLIKGFMKAGVVKEGVRIL---EEMLDNG 432
Query: 402 IVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQR 439
+P +ST+ +L E L++ + + +D++++ A R
Sbjct: 433 CLPNKSTYTLLIEGLQESGM---EGDVDKVMSMAMASR 467
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/292 (19%), Positives = 127/292 (43%), Gaps = 35/292 (11%)
Query: 120 AKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTR 179
K G+ HT +TY+++++ L +++ F + L+ + L+ S+ ++ D
Sbjct: 39 GKYHPGFSHTYDTYHSIIDKLSRARAFDGVESLLSQ----------LSRNSSHIKCGDDV 88
Query: 180 AMSVLMD-TLVKRNSVAHAYKVFLKFKDCISL--SSQIFDVLIHGWCKTRKSDYAQKAMK 236
+SV+ + L R + A K F + K+ S+ S ++ + L++ + + ++ +K
Sbjct: 89 FISVIRNYGLAGRPRL--ALKTFTRIKEEFSMQPSVKLLNTLLNVFVQNKRYHLVGSTLK 146
Query: 237 E-MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++G P+ S+ I+ C++ D EM G P+++T T ++
Sbjct: 147 NCKDKYGVLPNVFSFNILIKALCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFVSR 206
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ A KV+ ++ L D + Y+ L+ C + +A+K+
Sbjct: 207 GDLVNAEKVFSEISDKGWLPDATTYTVLMV----------------GYCKQGRLSDAIKV 250
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
+E + +P+ T+ + C +K+ + NL+ +ML K +P +
Sbjct: 251 MDNMEYNGVEPNEVTYGVMIDAYCKEKKSGEAR---NLIDDMLDKKFLPSST 299
>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Cucumis sativus]
gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Cucumis sativus]
Length = 621
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 85/366 (23%), Positives = 160/366 (43%), Gaps = 51/366 (13%)
Query: 69 SLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH 128
+L N ++ + + H+ ++ ++ + R P A + FC WA + G+ H
Sbjct: 157 ALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKP-------AFRFFC--WAAQKPGFAH 207
Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEIDE--------LSNGYVSLAA------------ 168
+TYN M+ LGK+++F M L++E+ E + + + AA
Sbjct: 208 DSKTYNTMMTILGKTRQFETMVSLLEEMAEKELLTMETFTVCFKAFAAAKERKKAVGVLE 267
Query: 169 -MSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRK 227
M ++ ++ L+D+L + A +F K + + Q + VL++GWC+ R
Sbjct: 268 LMKKYKYKVGVETINCLLDSLGRAKLGKEALTIFEKLHGRFTPNLQTYTVLLNGWCRVRN 327
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
A K +M F PD V++ +E R K + M+ KG P V + TI
Sbjct: 328 LMEAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSPDVKSYTI 387
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-LIYNTMISSACVR 346
++ K ++ EA++ +E+M+ C D + Y+ LI R +Y
Sbjct: 388 LVRDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDTVYG--------- 438
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
L ++++ + C PD +T+ +K+ + KRM D + + ++M+ GI P
Sbjct: 439 --------LLKEMKANGCPPDGKTYNALIKLMTN-KRMPDD--AVRIYKKMIENGIKPTT 487
Query: 407 STHKML 412
T+ M+
Sbjct: 488 HTYSMM 493
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D A + +++ L++ + A K+F K S + + +L+ +CK K A +
Sbjct: 346 DIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSPDVKSYTILVRDFCKQAKMKEAVQYF 405
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM G PD YTC I + +K V LKEM+ GC P T ++ +
Sbjct: 406 EEMQGAGCRPDAAIYTCLITGFGNQKRMDTVYGLLKEMKANGCPPDGKTYNALIKLMTNK 465
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ +A+++Y+KM + T YS ++
Sbjct: 466 RMPDDAVRIYKKMIENGIKPTTHTYSMMM 494
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 1/149 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D ++ ++L+ K+ + A + F + + + I+ LI G+ ++ D +
Sbjct: 381 DVKSYTILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDTVYGLL 440
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KEM +G PDG +Y I+ ++ K+M E G KP+ T +++M + +
Sbjct: 441 KEMKANGCPPDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGIKPTTHTYSMMMKSYFQT 500
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ + +++MK C D + Y+ I
Sbjct: 501 RNYEMGVAAWDEMKLKGCCPDDNSYTVFI 529
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 18/247 (7%)
Query: 63 LASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKT 122
L W L E +I + + ED + D+ + +L K +A+K F AK
Sbjct: 319 LNGWCRVRNLMEAGKIWNQMIDEDFKPDIVAHNTMLEGLLRC-KKRSDAIKLFEVMKAK- 376
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
G ++Y +V K K M E V+ +E+ R D +
Sbjct: 377 --GPSPDVKSYTILVRDFCKQAK---MKEAVQYFEEMQGAGC----------RPDAAIYT 421
Query: 183 VLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+ + + Y + + K + + ++ LI R D A + K+M ++
Sbjct: 422 CLITGFGNQKRMDTVYGLLKEMKANGCPPDGKTYNALIKLMTNKRMPDDAVRIYKKMIEN 481
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G P +Y+ ++ Y + +++ EM+ KGC P + T+ + L + EA
Sbjct: 482 GIKPTTHTYSMMMKSYFQTRNYEMGVAAWDEMKLKGCCPDDNSYTVFIGGLISLGRCAEA 541
Query: 302 LKVYEKM 308
K E+M
Sbjct: 542 GKYLEEM 548
>gi|356499705|ref|XP_003518677.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g02420-like [Glycine max]
Length = 500
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/378 (23%), Positives = 160/378 (42%), Gaps = 53/378 (14%)
Query: 51 TQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVE 110
Q+ D V L+S +L + + S LS D +D+V + +R + +P + +E
Sbjct: 29 NQNDDVQKVFGILSSTSTPEQLKQSLKSSGVFLSNDV---IDQVLKRVRFSHGNPSQTLE 85
Query: 111 ALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMS 170
F + + G+ H+ + + M+ LG+S+ FG +WEL+ E ++ +
Sbjct: 86 -----FFRYTGRRKGFYHSSFSLDTMLYILGRSRMFGQVWELLIEARRKDQTAITARTVM 140
Query: 171 TVMRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC 207
V+ R+ DT + L+ TL + S+A A V+ K
Sbjct: 141 VVLGRIAKVCSVRQTVESFRKFRKLVQEFDTNCFNALLRTLCQEKSMADARNVYHSLKHR 200
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ Q F++L+ GW +D K MKEM G +PD V+Y ++ YC+ ++ K
Sbjct: 201 FRPNLQTFNILLSGWKTPEDADLFFKEMKEM---GVTPDVVTYNSLMDVYCKGREIEKAY 257
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
L EM+++ P VIT T ++ L Q +A V ++MK C D +
Sbjct: 258 KMLDEMRDQDFSPDVITYTCIIGGLGLIGQPDKARNVLKEMKEYGCYPDAA--------- 308
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
YN I + C+ G+A L +++ P+ T+ ++ ++
Sbjct: 309 -------AYNAAIRNFCIAKRLGDAHGLVEEMVTKGLSPNATTYNLFFRVFYWSNDLQSS 361
Query: 388 MLVLNLMREMLSKGIVPQ 405
N+ + M+ +G +P
Sbjct: 362 ---WNMYQRMMVEGCLPN 376
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 1/142 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + LMD K + AYK+ + +D S + +I G + D A+ +
Sbjct: 236 DVVTYNSLMDVYCKGREIEKAYKMLDEMRDQDFSPDVITYTCIIGGLGLIGQPDKARNVL 295
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KEM ++G PD +Y I ++C K ++EM KG P+ T + +
Sbjct: 296 KEMKEYGCYPDAAAYNAAIRNFCIAKRLGDAHGLVEEMVTKGLSPNATTYNLFFRVFYWS 355
Query: 296 KQIYEALKVYEKMKSDDCLTDT 317
+ + +Y++M + CL +T
Sbjct: 356 NDLQSSWNMYQRMMVEGCLPNT 377
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 42/94 (44%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ I +C ++ A ++EM G SP+ +Y F + D + + M
Sbjct: 310 YNAAIRNFCIAKRLGDAHGLVEEMVTKGLSPNATTYNLFFRVFYWSNDLQSSWNMYQRMM 369
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+GC P+ +C ++ + +++ AL+ + M
Sbjct: 370 VEGCLPNTQSCMFLIRLFRRHEKVEMALQFWGDM 403
>gi|255558584|ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540536|gb|EEF42103.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 439
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 156/362 (43%), Gaps = 53/362 (14%)
Query: 104 SPDKVVEALKCF---------CFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVK 154
SP+ V + L+ F F WA+ Q Y H+ Y+ M+E+L K +++ +MW+L+
Sbjct: 21 SPEIVEDVLRRFENAGMVAYRFFEWAEKQLHYTHSVRAYHTMIESLAKIRQYQIMWDLIN 80
Query: 155 EIDE-----------LSNGYVSLAAMS------TVMRRLDT----RAMSVLMDTLVKRNS 193
+ + Y + VM + D A + L L K +
Sbjct: 81 AMKRKRMLNVETFCIIMRKYARAQKLEEAVYTFNVMEKYDVPPNLAAFNGLFSALCKSKN 140
Query: 194 VAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
V A ++F KD S+ + +L+ GW KT A++ +EM G SPD V+Y
Sbjct: 141 VRKAQEIFDSSKDRFVPDSKTYTILLEGWGKTPNLPKAREIFREMVDVGCSPDIVTYGIM 200
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
++ C+ + +KEM CKP+ ++++H +I +A+ + M+ +
Sbjct: 201 VDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIHTYGIENRIEDAVDTFLGMEKNGV 260
Query: 314 LTDTSFYSSLIFILSKAVRFL-IY------------------NTMISSACVRSEEGNALK 354
D + Y++LI K +F +Y N ++++ R E A +
Sbjct: 261 KADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIILNNLIARGETDEAFR 320
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ +++ + C+PD +T+ +KM C + ++ + L + + M K VP T +L
Sbjct: 321 VFRRMIK-VCEPDADTYTMMIKMFCERNELE---MALKVWKYMKKKHFVPSMHTFSVLIN 376
Query: 415 EL 416
L
Sbjct: 377 GL 378
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 89/201 (44%), Gaps = 16/201 (7%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
+ +L Y +++ +A+ F + G YNA++ A K KF ++ ++
Sbjct: 231 IYSVLIHTYGIENRIEDAVDTFL---GMEKNGVKADVAAYNALIGAFCKVNKFKNVYRVL 287
Query: 154 KEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
E+D Y + ++R ++++++ L+ R A++VF + +
Sbjct: 288 NEMD-----YKGMQP--------NSRTLNIILNNLIARGETDEAFRVFRRMIKVCEPDAD 334
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ ++I +C+ + + A K K M + F P +++ I C E D L++M
Sbjct: 335 TYTMMIKMFCERNELEMALKVWKYMKKKHFVPSMHTFSVLINGLCEEGDVSHACVMLEDM 394
Query: 274 QEKGCKPSVITCTIVMHALEK 294
EKG +PS +T + H L K
Sbjct: 395 IEKGIRPSGVTFGRLRHLLIK 415
>gi|326531326|dbj|BAK05014.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 537
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 95/393 (24%), Positives = 160/393 (40%), Gaps = 54/393 (13%)
Query: 88 ETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFG 147
E D D V ++L+K+ + + FTWA Y H P TY M++ LG+ KK
Sbjct: 109 EIDEDVVLKVLQKQRSN-----WQVALLFFTWAAGLPTYEHGPRTYIEMLDILGRMKKVR 163
Query: 148 LMWELVKEIDELSNGYVSLAAMSTVMRR------------------------LDTRAMSV 183
LM +L EI E G V M V+ +D +
Sbjct: 164 LMRQLFDEIPEQRRGLVVTNRMFAVLLNRYAGAHKVQEAIEIFYKRNDYGFEVDLVGFQI 223
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ +L + V A +FL+ KD + ++++++GWC A++ E+
Sbjct: 224 LLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLPDAKRVWNEIIASKL 283
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD +Y FI + M EKG P V C ++ L K+I EALK
Sbjct: 284 KPDLFTYGTFINALTKAGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKKIPEALK 343
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRF-LIY-------------NTMISSACVRSEE 349
++ +M C D + Y++LI K R +Y N M + +++ E
Sbjct: 344 IFGEMNDRGCQADVATYNTLIKHFCKIRRTEKVYELLDDMEKKGCSPNNMTYTYILKTTE 403
Query: 350 G--NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
+ + L Q++EE CK D +T+ L + K K V + EM G P +
Sbjct: 404 KPRDVMNLIQRMEESGCKLDSDTYNLILNLYVSMKYEKG---VQQVWEEMERNGSGPDQR 460
Query: 408 THKMLAEELEKKSLGNAKERIDELLTHATEQRT 440
+ ++ L +++ ++D+ L + T ++
Sbjct: 461 SFTIMVHGL------HSQGQLDQALQYYTTMKS 487
>gi|15219049|ref|NP_175673.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207559|sp|Q9SSR6.1|PPR78_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g52640, mitochondrial; Flags: Precursor
gi|5903042|gb|AAD55601.1|AC008016_11 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
gi|45773940|gb|AAS76774.1| At1g52640 [Arabidopsis thaliana]
gi|62320530|dbj|BAD95108.1| hypothetical protein [Arabidopsis thaliana]
gi|332194712|gb|AEE32833.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 96/402 (23%), Positives = 164/402 (40%), Gaps = 62/402 (15%)
Query: 72 LNEQSRISSHALSEDHETDVDKVSEILRKRYPS-PDKVVEALKCFC----------FTWA 120
+NE SR+ S DH D + L P +VE + C F WA
Sbjct: 38 VNEISRVLS-----DHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWA 92
Query: 121 KTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR-----R 175
+ + H+ E+Y+ +VE LG SK+F L+W+ + E E + +S V R
Sbjct: 93 RRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRAN 152
Query: 176 LDTRA------------------MSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFD 216
L + A + L+ +L + V HA + F K K I S++ +
Sbjct: 153 LPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYS 212
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
+L+ GW + R + A+K EM + D ++Y ++ C+ D +EM
Sbjct: 213 ILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNL 272
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR---- 332
G KP + I +HA A ++ A KV ++MK D + + ++ +I L K +
Sbjct: 273 GLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDA 332
Query: 333 FLI---------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
+L+ YN++++ C E A KL +++ C PD T+ LK+
Sbjct: 333 YLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKL 392
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
R + M E + P +T+ ++ L +K
Sbjct: 393 LIRIGRFDRATEIWEGMSE---RKFYPTVATYTVMIHGLVRK 431
>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
Length = 540
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 92/401 (22%), Positives = 165/401 (41%), Gaps = 63/401 (15%)
Query: 59 VIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFC-- 116
V+P A + ++E + +S E + V + L SP V E LK
Sbjct: 75 VVPGAAQEGLAPGVSEAAERVCRVVSAQPEHRIAPVLDALGVTV-SPQLVAEVLKNLSNA 133
Query: 117 -------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEID------------ 157
F WA+ Q G+ ++ E ++ ++EALGK K+F L+W LV+ +
Sbjct: 134 GILALAFFRWAERQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRSCLSKDTFKI 193
Query: 158 ---------ELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKD 206
++ + MS+ + D + L+D L K V A+ +F +K K
Sbjct: 194 IVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKG 253
Query: 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
+ + VL+ GW + + +EM G PD V+Y I +C+ +
Sbjct: 254 RFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEA 313
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
EM+E GC PS ++++ L +++ EALK ++ K + +++I
Sbjct: 314 IKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGA 373
Query: 327 LSKAVRF-----------------------LIYNTMISSACVRSEEGNALKLRQKIEEDS 363
+A+ F +I N +I S + A L Q++E D
Sbjct: 374 YCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIE----EAYNLFQRMERDG 429
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
C+P+ T+ + M C +R+ + L + ++M KG++P
Sbjct: 430 CEPELNTYTMMVGMFCSNERVD---MALKVWKQMKEKGVLP 467
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+ +I +C+ + +A K + EM + G P+ +Y + H + + + + M+
Sbjct: 368 NAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMER 427
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335
GC+P + T T+++ +++ ALKV+++MK L +S+LI L
Sbjct: 428 DGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALI-------NGLC 480
Query: 336 YNTMISSACVRSEE 349
++ + ACV +E
Sbjct: 481 FDNRLEEACVYFQE 494
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 94/207 (45%), Gaps = 17/207 (8%)
Query: 104 SPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGY 163
S +++ EALK F + ++G+ T NA++ A ++ +F +++V E+ + G
Sbjct: 341 SMERLDEALKYFQLS---KESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGP 397
Query: 164 VSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGW 222
+TR ++++ L+K + AY +F + +D + +++ +
Sbjct: 398 -------------NTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMF 444
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
C + D A K K+M + G P ++ I C + + +EM +KG +P
Sbjct: 445 CSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRLEEACVYFQEMLDKGIRPPG 504
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMK 309
+ + AL + +I A +V ++++
Sbjct: 505 QLFSNLKEALVEGGRITLAQEVTQRLE 531
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 97/218 (44%), Gaps = 23/218 (10%)
Query: 110 EALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAM 169
EA+K F ++G M +P Y ++ LG ++ +DE + Y L+
Sbjct: 312 EAIKVF---HEMEESGCMPSPHVYCMLINGLGSMER----------LDE-ALKYFQLSKE 357
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKS 228
S + T + ++ + HA+K+ + K I +++ +D++++ K+ K
Sbjct: 358 SGFPMEVPT--CNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKI 415
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK---EMQEKGCKPSVITC 285
+ A + M + G P+ +YT + +C + +VD LK +M+EKG P +
Sbjct: 416 EEAYNLFQRMERDGCEPELNTYTMMVGMFCSNE---RVDMALKVWKQMKEKGVLPCMHMF 472
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+ +++ L ++ EA +++M +S+L
Sbjct: 473 SALINGLCFDNRLEEACVYFQEMLDKGIRPPGQLFSNL 510
>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1188
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 149/331 (45%), Gaps = 46/331 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA Q GY H+ E +MV+ L K ++FG +W L++E+ + + + ++RR
Sbjct: 121 FLWATKQPGYCHSYEVCKSMVKILSKMRQFGAVWGLIEEMRKENPELIEPELFVVLIRRF 180
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
D L+D L K SV A KVF ++ I + +
Sbjct: 181 ASANMVKKAVEVLDEMPKYGFEPDEYVFGCLLDALCKNGSVKDASKVFEDMREKIPPNLR 240
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F L++GWC+ K A++ + +M + G PD V +T + Y L +M
Sbjct: 241 YFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLLNDM 300
Query: 274 QEKGCKPSVITCTIVMHAL-EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FI 326
+++G +P+ T+++ AL K++ EA++V+ +M+ C D Y++LI +
Sbjct: 301 RKRGYEPNANCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGM 360
Query: 327 LSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
+ K L Y ++ + + + L+L +K+++ C PD +
Sbjct: 361 IDKGYSVLDDMRKKGVMPSQVTYMQILVAHEKKEQFEECLELIEKMKQIGCHPDLLIYNV 420
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+++ C+ + +K+ + + N EM + G+ P
Sbjct: 421 VIRLACNFREVKEAVRLWN---EMEANGLSP 448
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 92/215 (42%), Gaps = 42/215 (19%)
Query: 215 FDVLIHGWCKTRKS-DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ VLI C+T K D A + EM ++G D V+YT I +C+ K L +M
Sbjct: 312 YTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDM 371
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
++KG PS +T ++ A EK +Q E L++ EKMK C D
Sbjct: 372 RKKGVMPSQVTYMQILVAHEKKEQFEECLELIEKMKQIGCHPD----------------L 415
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE----------THARSLKMCCHKKR 383
LIYN +I AC E A++L ++E + P + + ++ C H
Sbjct: 416 LIYNVVIRLACNFREVKEAVRLWNEMEANGLSPGADMFVIMINGFTSQGYLIEACSH--- 472
Query: 384 MKDGMLVLNLMREMLSKGI--VPQESTHKMLAEEL 416
+EM+S+GI PQ T K L L
Sbjct: 473 ----------FKEMVSRGIFSAPQYGTLKSLLNTL 497
>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
Length = 540
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 92/401 (22%), Positives = 165/401 (41%), Gaps = 63/401 (15%)
Query: 59 VIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFC-- 116
V+P A + ++E + +S E + V + L SP V E LK
Sbjct: 75 VVPGAAQEGLAPGVSEAAERVCRVVSAQPEHRIAPVLDALGVTV-SPQLVAEVLKNLSNA 133
Query: 117 -------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEID------------ 157
F WA+ Q G+ ++ E ++ ++EALGK K+F L+W LV+ +
Sbjct: 134 GILALAFFRWAERQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRSCLSKDTFKI 193
Query: 158 ---------ELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKD 206
++ + MS+ + D + L+D L K V A+ +F +K K
Sbjct: 194 IVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKG 253
Query: 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
+ + VL+ GW + + +EM G PD V+Y I +C+ +
Sbjct: 254 RFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEA 313
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
EM+E GC PS ++++ L +++ EALK ++ K + +++I
Sbjct: 314 IKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGA 373
Query: 327 LSKAVRF-----------------------LIYNTMISSACVRSEEGNALKLRQKIEEDS 363
+A+ F +I N +I S + A L Q++E D
Sbjct: 374 YCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIE----EAYNLFQRMERDG 429
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
C+P+ T+ + M C +R+ + L + ++M KG++P
Sbjct: 430 CEPELNTYTMMVGMFCSNERVD---MALKVWKQMKEKGVLP 467
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 94/207 (45%), Gaps = 17/207 (8%)
Query: 104 SPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGY 163
S +++ EALK F + ++G+ T NA++ A ++ +F +++V E+ + G
Sbjct: 341 SMERLDEALKYFQLS---KESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGP 397
Query: 164 VSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGW 222
+TR ++++ L+K + AY +F + +D + +++ +
Sbjct: 398 -------------NTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMF 444
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
C + D A K K+M + G P ++ I C E + +EM +KG +P
Sbjct: 445 CSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPG 504
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMK 309
+ + AL + +I A +V ++++
Sbjct: 505 QLFSNLKEALVEGGRITLAQEVTQRLE 531
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 7/134 (5%)
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+ +I +C+ + +A K + EM + G P+ +Y + H + + + + M+
Sbjct: 368 NAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMER 427
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335
GC+P + T T+++ +++ ALKV+++MK L +S+LI L
Sbjct: 428 DGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALI-------NGLC 480
Query: 336 YNTMISSACVRSEE 349
+ + ACV +E
Sbjct: 481 FENRLEEACVYFQE 494
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 97/218 (44%), Gaps = 23/218 (10%)
Query: 110 EALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAM 169
EA+K F ++G M +P Y ++ LG ++ +DE + Y L+
Sbjct: 312 EAIKVF---HEMEESGCMPSPHVYCMLINGLGSMER----------LDE-ALKYFQLSKE 357
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKS 228
S + T + ++ + HA+K+ + K I +++ +D++++ K+ K
Sbjct: 358 SGFPMEVPT--CNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKI 415
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK---EMQEKGCKPSVITC 285
+ A + M + G P+ +YT + +C + +VD LK +M+EKG P +
Sbjct: 416 EEAYNLFQRMERDGCEPELNTYTMMVGMFCSNE---RVDMALKVWKQMKEKGVLPCMHMF 472
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+ +++ L ++ EA +++M +S+L
Sbjct: 473 SALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNL 510
>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
Length = 1031
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 149/323 (46%), Gaps = 42/323 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K + +LV E +S+G+V D S+L D L KR
Sbjct: 333 TYNTLISGLCKQQNVDRAKDLVDEF--VSSGFVP-----------DVVTYSILADGLCKR 379
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A+++ + K C + ++ LI G CK K++ A + ++ + GF PD V+
Sbjct: 380 GRIDEAFELVKEMSGKGCTP-NLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVT 438
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
YT ++ C+E K ++ M ++GC PSVIT T +M L + ++ EA ++++M
Sbjct: 439 YTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMV 498
Query: 310 SDDCLTDTSFYSSLIFILSKAVR----------------FLIYNTMISSACVRSEEGNAL 353
S DC D Y SL+ K+ R +YN ++ C +EG
Sbjct: 499 SKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYC---KEGRLD 555
Query: 354 KLRQKIEEDSCK---PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
++ E+ +C+ P+ +T+ + C ++ + + M S G VP ++
Sbjct: 556 EIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEA---FPFLESMHSAGCVPDVVSYN 612
Query: 411 MLAEELEKKS-LGNAKERIDELL 432
++ + L K S A++ +D+++
Sbjct: 613 IIIDGLFKASKPKEARQVLDQMI 635
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 98/235 (41%), Gaps = 28/235 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++LI G CK K+D A + + EM G +PD V++ ++ C+ F + L M
Sbjct: 264 YNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMA 323
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
E+ C+PS T ++ L K + + A + ++ S + D YS L L K R
Sbjct: 324 ERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRID 383
Query: 333 -----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ YNT+I C S+ A +L + + PD T+ +
Sbjct: 384 EAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIV 443
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDE 430
C + R+ L ++ ML +G P T+ L E L + R+DE
Sbjct: 444 DGLCKEGRLDKA---LKMVEGMLKRGCTPSVITYTALMEGLCRTG------RVDE 489
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 127/326 (38%), Gaps = 45/326 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEAL---GKSKKFGLMWELVKEIDELSNGYV------SLA 167
F WA + G+ H+ T N ++ L G S + M+E + + + Y SL
Sbjct: 113 FVWAGDR-GFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLC 171
Query: 168 AMS------TVMRRLDTRAM-------SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
M+ T++ + R ++L K + A ++F ++ S +
Sbjct: 172 QMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIF---RNIPSPDAIA 228
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +IHG C+ D A + +KEM + +PD +Y I+ C+ K L EM
Sbjct: 229 YNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMV 288
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
++G P +T +M L KA + A + M +C
Sbjct: 289 DRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCC---------------- 332
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YNT+IS C + A L + PD T++ C + R+ + L+
Sbjct: 333 TYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEA---FELV 389
Query: 395 REMLSKGIVPQESTHKMLAEELEKKS 420
+EM KG P T+ L + L K S
Sbjct: 390 KEMSGKGCTPNLVTYNTLIDGLCKAS 415
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 111/277 (40%), Gaps = 31/277 (11%)
Query: 121 KTQTGYMHTP--ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT 178
K G TP + YNA+++ K + +DE+ N + +A V +
Sbjct: 527 KVVDGIRGTPYIDVYNALMDGYCKEGR----------LDEIPNVFEDMACRGCVP---NI 573
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKE 237
+ +++MD L K V A+ + + ++++I G K K A++ + +
Sbjct: 574 KTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQ 633
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M Q G PD V+Y + +C+E+ F LK M + G P +T ++ L + +
Sbjct: 634 MIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNR 693
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
+ +A ++ +M + C+ YNT+I C AL L
Sbjct: 694 LGDAYELMHEMLRNGCVVSAC---------------TTYNTIIDRLCKEGCLKQALLLMD 738
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+ + + T+ + C + R+ + +L+ M
Sbjct: 739 HMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM 775
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 110/243 (45%), Gaps = 34/243 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMS--TVMRRLDTRA----MSVLM 185
TYN ++ L ++ + G +EL+ E+ L NG V A + T++ RL +LM
Sbjct: 680 TYNTLISGLSQTNRLGDAYELMHEM--LRNGCVVSACTTYNTIIDRLCKEGCLKQALLLM 737
Query: 186 DTL----VKRNSVAHAYKVFL-------KFKDCISLSSQI--------FDVLIHGWCKTR 226
D + V+ N+V Y +F+ + + SL S++ + +I G CK
Sbjct: 738 DHMTGHGVEANTVT--YNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAE 795
Query: 227 KSDYAQKAMKEMFQ-HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
+ D A K +EM G ++ I+ + + K + L M ++GC PSVIT
Sbjct: 796 QLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITY 855
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTMIS 341
+V+ L K ++ +A +++++M + + Y+ LI+ L R + M S
Sbjct: 856 NMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMAS 915
Query: 342 SAC 344
S C
Sbjct: 916 SDC 918
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 20/198 (10%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
T G TYN ++ L K + L+ E+D L D +
Sbjct: 741 TGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR----------------DEVSY 784
Query: 182 SVLMDTLVKRNSVAHAYKV---FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
+ ++ L K + A K+ + K + ++S F++LI + KT++ D A + M
Sbjct: 785 TTVIIGLCKAEQLDRASKLAREMVAVKG-LCITSHTFNLLIDAFTKTKRLDEALTLLGLM 843
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
Q G SP ++Y I C+ K EM +G S ++ T++++ L +
Sbjct: 844 VQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRG 903
Query: 299 YEALKVYEKMKSDDCLTD 316
EAL+V E+M S DC D
Sbjct: 904 KEALQVLEEMASSDCEID 921
>gi|356549210|ref|XP_003542990.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Glycine max]
Length = 648
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 55/350 (15%)
Query: 87 HETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKF 146
H+ VD + R P A + FC WA + G+ H TYN M+ LG++++F
Sbjct: 204 HDLVVDVLQRFKHARKP-------AFRFFC--WAGKRPGFAHDSRTYNFMMCVLGRTRQF 254
Query: 147 GLMWELVKEIDELSNGYVSLAAMSTVMR-----------------------RLDTRAMSV 183
M +++E+ E G +++ S ++ ++ ++
Sbjct: 255 ETMVAMLEEMGE--KGLLTMETFSIAIKAFAEAKQRKKAVGIFDLMKKYGFKVGVDVINF 312
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+D+L A VF K KD + S Q + +L+ GWC+ + A + EM GF
Sbjct: 313 LLDSLSTAKLGKEAQAVFEKLKDRFTPSLQTYTILLSGWCRLKNLLEAGRVWNEMIDRGF 372
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+PD V++ +E + K + M+ KG P+V + TI++ K K + EA++
Sbjct: 373 NPDVVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRSYTIMIQDFCKQKLMGEAIE 432
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRF-LIYNTMISSACVRSEEGNALKLRQKIEED 362
++ M C D + Y+ LI + + ++Y+ L +++ E
Sbjct: 433 YFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYS-----------------LLKEMRER 475
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C PD T+ +K+ + D + + ++M+ GI P T+ M+
Sbjct: 476 GCPPDGRTYNALIKLMTSQHMPDDA---VRIYKKMIQSGIKPTIHTYNMI 522
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 64/145 (44%), Gaps = 1/145 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ R+ ++++ K+ + A + F D + ++ LI G+ + +K D +
Sbjct: 410 NVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSLL 469
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KEM + G PDG +Y I+ + K+M + G KP++ T ++M +
Sbjct: 470 KEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYFVT 529
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFY 320
K +++++M C D + Y
Sbjct: 530 KNYEMGHEIWDEMHQKGCCPDDNSY 554
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 83/205 (40%), Gaps = 26/205 (12%)
Query: 88 ETDVDKVSEILRKRYPSPD--KVVEALKCFC----------FTWAKTQTGYMHTPETYNA 135
++D K+ EI++ + PSP+ ++ FC + G Y
Sbjct: 392 KSDAIKLFEIMKAKGPSPNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTC 451
Query: 136 MVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVA 195
++ G+ KK +++ L+KE+ E D R + L+ + ++
Sbjct: 452 LITGFGRQKKMDMVYSLLKEMRERGCPP-------------DGRTYNALIKLMTSQHMPD 498
Query: 196 HAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI 254
A +++ K + I + +++++ + T+ + + EM Q G PD SY +I
Sbjct: 499 DAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTKNYEMGHEIWDEMHQKGCCPDDNSYIVYI 558
Query: 255 EHYCREKDFRKVDYTLKEMQEKGCK 279
R+ + L+EM EKG K
Sbjct: 559 GGLIRQDRSGEACKYLEEMLEKGMK 583
Score = 38.1 bits (87), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 21/177 (11%)
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
GF+ D +Y + R + F + L+EM EKG ++ T +I + A +AKQ +A
Sbjct: 233 GFAHDSRTYNFMMCVLGRTRQFETMVAMLEEMGEKGLL-TMETFSIAIKAFAEAKQRKKA 291
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
+ +++ MK Y + + + FL+ + +S+A + E A + +K++
Sbjct: 292 VGIFDLMKK---------YGFKVGV--DVINFLLDS--LSTAKLGKE---AQAVFEKLK- 334
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
D P +T+ L C K + + V N EM+ +G P H ++ E L K
Sbjct: 335 DRFTPSLQTYTILLSGWCRLKNLLEAGRVWN---EMIDRGFNPDVVAHNVMLEGLLK 388
>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
Length = 1184
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 146/335 (43%), Gaps = 46/335 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA Q GY H+ E +MV L K ++FG +W L++E+ + + + +MRR
Sbjct: 118 FLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRF 177
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
D L+D L K SV A KVF ++ + +
Sbjct: 178 ASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLR 237
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F L++GWC+ K A++ + +M + G PD V +T + Y + +M
Sbjct: 238 YFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDM 297
Query: 274 QEKGCKPSVITCTIVMHAL-EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FI 326
+++G +P+V T+++ AL K++ EA++V+ +M+ C D Y++LI +
Sbjct: 298 RKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGM 357
Query: 327 LSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
+ K L Y ++ + + + L+L +K++ C PD +
Sbjct: 358 IDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNV 417
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+++ C +K+ + + N EM + G+ P T
Sbjct: 418 VIRLACKLGEVKEAVRLWN---EMEANGLSPGVDT 449
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 94/207 (45%), Gaps = 26/207 (12%)
Query: 215 FDVLIHGWCKTRKS-DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ VLI C+T K D A + EM ++G D V+YT I +C+ K L +M
Sbjct: 309 YTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDM 368
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
++KG PS +T +M A EK +Q E L++ EKMK C D
Sbjct: 369 RKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPD----------------L 412
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV--L 391
LIYN +I AC E A++L ++E + P +T + + G L+
Sbjct: 413 LIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQ-----GFLIEAC 467
Query: 392 NLMREMLSKGI--VPQESTHKMLAEEL 416
N +EM+S+GI PQ T K L L
Sbjct: 468 NHFKEMVSRGIFSAPQYGTLKSLLNNL 494
>gi|125564557|gb|EAZ09937.1| hypothetical protein OsI_32236 [Oryza sativa Indica Group]
Length = 544
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 145/329 (44%), Gaps = 47/329 (14%)
Query: 130 PETYNAMVEALGKSKKFGLMWELVKEIDELS---NGYVSLAAM------------STVMR 174
P Y AM++ L K F L L+ E+ E S + + LA + S + R
Sbjct: 145 PALYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDLFR 204
Query: 175 RL--------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR 226
R+ D ++ L+ L K+ + A +F +K + ++ L+H WC++
Sbjct: 205 RMEEYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKSVFTPDVVLYTTLVHAWCRSG 264
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
+ D A++ EM Q G +P+ +YT I+ R + L +M + GC P+ T
Sbjct: 265 RLDEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFN 324
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI--------LSKAVRFL---- 334
+M A KA + + L+V+ +M+ C D Y+ L+ L A++ L
Sbjct: 325 AIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRMI 384
Query: 335 ---------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
+N M+ V A KL ++++E CKP+ T+ +++ +K M
Sbjct: 385 AKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMD 444
Query: 386 DGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+VL + R+M ++G+ P +T+ L E
Sbjct: 445 ---MVLRIKRDMDAQGVEPNVNTYAALIE 470
>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 146/335 (43%), Gaps = 46/335 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA Q GY H+ E +MV L K ++FG +W L++E+ + + + +MRR
Sbjct: 118 FLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRF 177
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
D L+D L K SV A KVF ++ + +
Sbjct: 178 ASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLR 237
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F L++GWC+ K A++ + +M + G PD V +T + Y + +M
Sbjct: 238 YFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDM 297
Query: 274 QEKGCKPSVITCTIVMHAL-EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FI 326
+++G +P+V T+++ AL K++ EA++V+ +M+ C D Y++LI +
Sbjct: 298 RKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGM 357
Query: 327 LSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
+ K L Y ++ + + + L+L +K++ C PD +
Sbjct: 358 IDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNV 417
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+++ C +K+ + + N EM + G+ P T
Sbjct: 418 VIRLACKLGEVKEAVRLWN---EMEANGLSPGVDT 449
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 94/207 (45%), Gaps = 26/207 (12%)
Query: 215 FDVLIHGWCKTRKS-DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ VLI C+T K D A + EM ++G D V+YT I +C+ K L +M
Sbjct: 309 YTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDM 368
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
++KG PS +T +M A EK +Q E L++ EKMK C D
Sbjct: 369 RKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPD----------------L 412
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV--L 391
LIYN +I AC E A++L ++E + P +T + + G L+
Sbjct: 413 LIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQ-----GFLIEAC 467
Query: 392 NLMREMLSKGI--VPQESTHKMLAEEL 416
N +EM+S+GI PQ T K L L
Sbjct: 468 NHFKEMVSRGIFSAPQYGTLKSLLNNL 494
>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 482
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 125/264 (47%), Gaps = 32/264 (12%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF----LKFK-DCISLSSQIFDVLIHGWCKTRKSDYA 231
D + + ++D L K V AY +F KFK DC+S ++++++GWC +++ A
Sbjct: 161 DLSSFNTILDVLCKSKRVEMAYNLFKALKGKFKADCVS-----YNIIVNGWCLIKRTPKA 215
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
+ +KEM + G +P+ +Y + Y R + EM+++ C V+T T V+H
Sbjct: 216 LEMLKEMVERGLTPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIHG 275
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVR 332
L +I A V+ +M D L + +++LI IL K
Sbjct: 276 LGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPN 335
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
+ YN +I C E A++L +++E+D C+P+ +T+ ++ C ++ G L+
Sbjct: 336 SITYNLVIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYNILIRYFCDAGEIEKG---LD 392
Query: 393 LMREMLSKGIVPQESTHKMLAEEL 416
L ++M + +P T+ +L +
Sbjct: 393 LFQKMGNGDCLPNLDTYNILINSM 416
>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Glycine max]
Length = 564
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 145/339 (42%), Gaps = 48/339 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRR 175
F W+ + G+ +PE YN M++ GK ++F L W ++ + S G +++ S ++RR
Sbjct: 165 FNWSSSLDGFPASPEPYNEMLDLAGKLRQFDLAWHVIDLMK--SRGVEITVHTFSALVRR 222
Query: 176 L-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS 212
D A S+++ +L K+ A F K
Sbjct: 223 YVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKHRFEPDV 282
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
++ L+HGWC+ A++ +M G P+ +Y+ I+ CR + E
Sbjct: 283 VVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSE 342
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------ 326
M + GC P+ +T +M KA + + LKVY +MK C DT Y+ +I
Sbjct: 343 MIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDEN 402
Query: 327 LSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
L +A + L +N + + A ++ +++E +C+P+ T+
Sbjct: 403 LEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELNCQPNTLTYNI 462
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
++M + R D +VL + +EM + P +T+++L
Sbjct: 463 LMRMFA-ESRSTD--MVLKMKKEMDESQVEPNVNTYRIL 498
>gi|413939122|gb|AFW73673.1| hypothetical protein ZEAMMB73_530264 [Zea mays]
Length = 526
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 138/313 (44%), Gaps = 55/313 (17%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-------------- 176
+ Y+A+V+ALG++++F W +V +D ++G S + + RR
Sbjct: 119 DAYDAVVDALGRARQFDAAWRVV--VDASADGAASPRTFAVLARRYVAAGMTRQAIRAFD 176
Query: 177 ----------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR 226
D + L+DTL K A +VF K K + +++ +LI+GWCK
Sbjct: 177 DMEAFVSREPDAAEFATLLDTLCKYKYPKVATEVFNKRKYKYGPNEKMYSILIYGWCKVN 236
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----EKDFR------KVDYTLKEMQEK 276
+SD A+K +K+M HG P+ V+Y + CR D+R + LKEM+ +
Sbjct: 237 RSDMAKKFLKDMLVHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVHAAEDLLKEMRGR 296
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336
G +P V + +I++H +A + L ++ MK + Y+S+I L
Sbjct: 297 GIEPDVTSYSIILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCL--------- 347
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
S+C R E+G L L + + E C P T+ LK + KD L L +
Sbjct: 348 -----SSCGRLEDGEIL-LDEMVAEGVC-PSPATYNCFLK---EYRGRKDVTAALELYNK 397
Query: 397 MLSKGIVPQESTH 409
M + G + H
Sbjct: 398 MKAPGSLTAPDIH 410
>gi|297853022|ref|XP_002894392.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340234|gb|EFH70651.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 525
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 95/402 (23%), Positives = 165/402 (41%), Gaps = 62/402 (15%)
Query: 72 LNEQSRISSHALSEDHETDVDKVSEILRKRYPS-PDKVVEALKCFC----------FTWA 120
+NE SR+ S DH D + L P +VE + C F WA
Sbjct: 38 VNEISRVLS-----DHRNPKDDLEHTLAAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWA 92
Query: 121 KTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD--- 177
K + H+ E+Y+ +VE LG SK+F L+W+ + E E + ++ V R
Sbjct: 93 KRIPDFEHSLESYHILVEILGCSKQFALLWDFLIEAREYNYFEITSKVFWIVFRAYSRAN 152
Query: 178 -----TRA---------------MSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFD 216
+RA + L+ +L R V HA + F K K I S++ +
Sbjct: 153 LPSEASRAFNRMVEFGIKPCVDDLDQLLHSLCDRKHVNHAQEFFDKAKGFGIVPSAKTYS 212
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
+L+ GW + R + A+K EM ++ D ++Y ++ C+ D +EM
Sbjct: 213 ILVRGWARIRDASGARKVFDEMLENNCVVDLLAYNALLDALCKSGDVDGAYKMFQEMGNL 272
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR---- 332
G KP + I +H+ A ++ A +V ++MK D + + ++ +I L K +
Sbjct: 273 GLKPDAYSFAIFIHSYCDASDVHSAYQVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDA 332
Query: 333 FLI---------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
+L+ YN++++ C E A KL +++ C PD T+ LK+
Sbjct: 333 YLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKL 392
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
R V + M + P +T+ ++ L +K
Sbjct: 393 LIRIGRFDR---VTEIWEGMSERKFYPTVATYTVMIHGLVRK 431
>gi|413938979|gb|AFW73530.1| ATP binding protein [Zea mays]
Length = 551
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 106/426 (24%), Positives = 180/426 (42%), Gaps = 80/426 (18%)
Query: 2 PPKHDIWKLLSQSHLQ--KHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFV 59
PP ++ L + +Q + H NP L + H I LP+ L+ DE F
Sbjct: 31 PPS---FRPLHPTRIQPLRFHLPNPPVRRLSSEHAI------LPTHLQ-------DERFA 74
Query: 60 IPSLASWVESLKL----NEQSRISSHALSEDHETDVDKVSEIL-RKRYPSPDKVVEALKC 114
S + +K NE + + AL + T + V+++L R RY E L
Sbjct: 75 TLSDRIYDAVIKTGTESNEGTEAALDALGAELTTPL--VADVLHRLRYE------EKLAF 126
Query: 115 FCFTWAKTQTGYMHTPETYNAMVEALG----KSKKFGLMWELVKEIDELSNGYVSLAAMS 170
F WA Q GY H P TYN +++ L KS++FG++ ++ + + V + +
Sbjct: 127 RFFAWASQQDGYSHEPTTYNDIIDILSGTRYKSRQFGVLCNVLDHMKRHGSRSVPVEGLL 186
Query: 171 TV-----------MRRL------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC 207
+ MR+L +T A++VL+D K V A VF + K
Sbjct: 187 EILRAYTEKHLTHMRKLAKKRRVRMRTPPETDALNVLLDAFCKCGMVKEAEAVFGRVKRK 246
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ +++ + L GWC+ R A K ++EM Q +P+ +Y IE +C +
Sbjct: 247 LLGNAETYSTLFFGWCRARDPKKAMKVLEEMIQMKHTPESFTYVAAIESFCSAGLVSEAR 306
Query: 268 YTLKEMQEKG---CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ M+ +G P+ T +I++ AL KA ++ E ++ M++ C+ D + Y LI
Sbjct: 307 ELFEFMRTEGLTVSSPTAKTYSIMIVALAKADRMEECFELLSDMRTCGCMPDVTTYKDLI 366
Query: 325 ------FILSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
L A R L YN ++ C +AL+L +++ E C+
Sbjct: 367 EGMCLVGRLDAAYRVLDEMGRAGFPPDIVTYNCFLNVLCSLRNADDALELCERMIEAHCE 426
Query: 366 PDCETH 371
P T+
Sbjct: 427 PSVHTY 432
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 19/206 (9%)
Query: 128 HTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
HTPE TY A +E+ + LV E EL + + + + S+++
Sbjct: 282 HTPESFTYVAAIESFCSAG-------LVSEAREL---FEFMRTEGLTVSSPTAKTYSIMI 331
Query: 186 DTLVKRNSVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
L K + + +++ + C + + LI G C + D A + + EM + GF
Sbjct: 332 VALAKADRMEECFELLSDMRTCGCMPDVTTYKDLIEGMCLVGRLDAAYRVLDEMGRAGFP 391
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTL---KEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
PD V+Y CF+ C R D L + M E C+PSV T ++M + + + A
Sbjct: 392 PDIVTYNCFLNVLC---SLRNADDALELCERMIEAHCEPSVHTYNMLMMMFFEMGEAHRA 448
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFIL 327
L ++ +M C Y +I+ L
Sbjct: 449 LDIWLEMDKRGCQRAIDTYEIMIYGL 474
>gi|115476116|ref|NP_001061654.1| Os08g0369200 [Oryza sativa Japonica Group]
gi|113623623|dbj|BAF23568.1| Os08g0369200 [Oryza sativa Japonica Group]
gi|125603197|gb|EAZ42522.1| hypothetical protein OsJ_27088 [Oryza sativa Japonica Group]
gi|215740653|dbj|BAG97309.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 511
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 144/340 (42%), Gaps = 58/340 (17%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDE-----------LSNGYVSLAAMST-------- 171
+ Y+A+V+ALG++++F W LV E L+ YV+ A M+
Sbjct: 104 DAYDAVVDALGRARQFDAAWRLVVEAAADGAATPRTFAVLARRYVA-AGMTRQAVRAFDD 162
Query: 172 ----VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRK 227
V R D + L+DTL K A +VF K K + +++ VLI+GWCK +
Sbjct: 163 MEAFVGREPDAAEFTTLLDTLCKYKYPKVAAEVFNKRKYKYEPNEKMYTVLIYGWCKVNR 222
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----------EKDFRKVDYTLKEMQEKG 277
+D AQK +K+M HG P+ V+Y + CR ++ R + LKEM ++G
Sbjct: 223 NDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVRAAEDLLKEMHQRG 282
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF---- 333
+P+V + ++++H +A + L ++ MK + Y+S+I L+ R
Sbjct: 283 IEPNVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLASCGRLDDAE 342
Query: 334 ---------------LIYNTMISSACVRSEEGNALKLRQKIEEDS--CKPDCETHARSLK 376
YN R + AL+L K++ PD T+ L
Sbjct: 343 SLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPGSPATPDIHTYNILLG 402
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
M + M V N +M + P +++ +L L
Sbjct: 403 MFIKLNQHDTVMQVWN---DMCESTVGPDLNSYTLLVHGL 439
>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Vitis vinifera]
Length = 624
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 144/345 (41%), Gaps = 45/345 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDEL----------------- 159
F WAK G+ H+ E+Y+ +V+ LG SK+F L+W+ + ++ E
Sbjct: 101 FLWAKRLPGFEHSKESYHILVDILGSSKQFPLIWDFLSDMRETRCCEICPEIFWLIFRAY 160
Query: 160 ------SNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+ + M + + L+ L KR V A + F K + +++
Sbjct: 161 CRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFFDKVNVEVMPNAK 220
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ +L+ GW S A+K +EM + G + D V+Y +E C+ + + +EM
Sbjct: 221 TYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREM 280
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR- 332
G P + +I + A + I+ A +V ++M+ + + + Y+ ++ L K+ +
Sbjct: 281 GSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKV 340
Query: 333 ------------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
YN + + C E AL+L ++E+++C PD T+
Sbjct: 341 DEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMV 400
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
LKM R V ++ M +G P ST+ ++ KK
Sbjct: 401 LKMLLRVGRFDR---VTDVWGGMEERGFYPAASTYAVMVHGFCKK 442
>gi|297842515|ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334980|gb|EFH65398.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 482
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 144/341 (42%), Gaps = 46/341 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F W++ Q Y H+ Y+ M+E+ K +++ LMW+L+ + + +++ VMR+
Sbjct: 86 FQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAM--MKKKMLNVETFCIVMRKY 143
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+ A + L+ L K +V A ++F +D + S+
Sbjct: 144 ARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEIFENMRDRFTPDSK 203
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ +L+ GW K A++ +EM G PD V+Y+ ++ C+ + ++ M
Sbjct: 204 TYSILLEGWGKEPNLPKAREVFREMVDAGSLPDIVTYSIMVDILCKAGRVDEALGIVRSM 263
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR- 332
CKP+ ++++H ++ EA+ + +M+ D + ++SLI K R
Sbjct: 264 DPSICKPTTFIYSVLVHTYGTETRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKTNRM 323
Query: 333 ---FLIYNTMISSACVRSEEGNALKLRQKIEEDS--------------CKPDCETHARSL 375
+ + M S + + + LR I+ C+PD +T+ +
Sbjct: 324 KNVYRVLKEMKSKGVTPNSKSCNIILRHLIDRGEKDEAFDVFRKMIKVCEPDADTYTMMI 383
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
KM C KK M+ V MR+ KG+ P T +L L
Sbjct: 384 KMFCEKKEMETADKVWKYMRK---KGVFPSMHTFSVLINGL 421
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 85/191 (44%), Gaps = 16/191 (8%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
+ +L Y + ++ EA+ F ++G +N+++ A K+ + ++ ++
Sbjct: 274 IYSVLVHTYGTETRLEEAVDTFL---EMERSGMKADVAVFNSLIGAFCKTNRMKNVYRVL 330
Query: 154 KEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
KE+ S G ++++ ++++ L+ R A+ VF K +
Sbjct: 331 KEMK--SKGVTP-----------NSKSCNIILRHLIDRGEKDEAFDVFRKMIKVCEPDAD 377
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ ++I +C+ ++ + A K K M + G P +++ I C E + +K L+EM
Sbjct: 378 TYTMMIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEEPNTQKACVLLEEM 437
Query: 274 QEKGCKPSVIT 284
E G +PS T
Sbjct: 438 IEMGIRPSGAT 448
>gi|225437663|ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g02420-like [Vitis vinifera]
Length = 526
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 150/337 (44%), Gaps = 52/337 (15%)
Query: 58 FVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCF 117
F I S AS +LK + +S S LS D +DKV + +R + +P +AL F +
Sbjct: 64 FRIVSSASSTRNLKQSLKS--SGVFLSNDL---IDKVLKRVRFSHGNP---FQALAFFNY 115
Query: 118 TWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL- 176
T + G+ HTP + + M+ LG+S++F +WEL+ ++ +S ++ V+ R+
Sbjct: 116 T--NKRKGFYHTPFSLDTMLYILGRSRRFDQIWELLVDMRRKDQSLISPRSVQVVLGRIA 173
Query: 177 ----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
DT + L+ TL + S+ A V+ K +
Sbjct: 174 KVCSVKQTVESFRKFKKLVPEFDTACFNALLRTLCQEKSMRDARNVYHSLKHDFRPDLRT 233
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F++L+ GW + ++ A+ EM + G PD VSY C I+ YC+ ++ + + +M+
Sbjct: 234 FNILLSGW---KSAEEAEGFFDEMREMGVEPDVVSYNCLIDVYCKGREIERAYKVIDKMR 290
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
++ P VI+ T ++ L Q +A V ++MK C D +
Sbjct: 291 DEQISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDVA---------------- 334
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
YN I + C+ + G+A L ++ P+ T+
Sbjct: 335 AYNAAIRNFCIANRLGDADGLMDEMVGKGLSPNATTY 371
>gi|125561327|gb|EAZ06775.1| hypothetical protein OsI_29018 [Oryza sativa Indica Group]
Length = 511
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 143/340 (42%), Gaps = 58/340 (17%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDE-----------LSNGYVSLAAMST-------- 171
+ Y+A+V+ALG++++F W LV E L+ YV+ A M+
Sbjct: 104 DAYDAVVDALGRARQFDAAWRLVVEAAADGAATPRTFAVLARRYVA-AGMTRQAVRAFDD 162
Query: 172 ----VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRK 227
V R D + L+DTL K A +VF K K + +++ VLI+GWCK +
Sbjct: 163 MEAFVGREPDAAEFTTLLDTLCKYKYPKVAAEVFNKRKYKYEPNEKMYTVLIYGWCKVNR 222
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----------EKDFRKVDYTLKEMQEKG 277
+D AQK +K+M HG P+ V+Y + CR ++ R + LKEM ++G
Sbjct: 223 NDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVRAAEDLLKEMHQRG 282
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF---- 333
+P V + ++++H +A + L ++ MK + Y+S+I L+ R
Sbjct: 283 IEPDVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLASCGRLDDAE 342
Query: 334 ---------------LIYNTMISSACVRSEEGNALKLRQKIEEDS--CKPDCETHARSLK 376
YN R + AL+L K++ PD T+ L
Sbjct: 343 SLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPGSPATPDIHTYNILLG 402
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
M + M V N +M + P +++ +L L
Sbjct: 403 MFIKLNQHDTVMQVWN---DMCESTVGPDLNSYTLLVHGL 439
>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 915
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 145/329 (44%), Gaps = 33/329 (10%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWEL----VKEIDELSNGYVSLAAMSTV 172
F W + G+ H +++ +M+ L + + + +K D N L + ++
Sbjct: 97 FNWIGQKHGFKHNVQSHVSMLNILVPNGYLRIAENMRILMIKSTDSSENALFVLEMLRSM 156
Query: 173 MRRLDT-------RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF--DVLIHGWC 223
RR+D R ++L+ L + + V+L+ D + ++ IF + +++G+C
Sbjct: 157 NRRVDAFKFKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDM-VTPNIFTLNTMVNGYC 215
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
K A+ + ++ Q G S D +YT I YCR K+ + M KGC + +
Sbjct: 216 KLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEV 275
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSA 343
+ T ++H +A+++ EALK++ +M D+C Y+ +IF L
Sbjct: 276 SYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFAL---------------- 319
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C + AL + +++ E C+P+ T+ + C D +LN ML KG++
Sbjct: 320 CQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILN---GMLEKGLI 376
Query: 404 PQESTHKMLAEELEKKSLGNAKERIDELL 432
P T+ L + KK L + I L+
Sbjct: 377 PSVVTYNALIDGYCKKGLSASALEILSLM 405
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 14/194 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ K G ++L+ ++E +G V D SV +DTL KR
Sbjct: 451 TYNILIHGQCKEGDLGSAYKLLSLMNE--SGLVP-----------DEWTYSVFIDTLCKR 497
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A +F K+ I + I+ LI G+CK K + + +M G P+ ++Y
Sbjct: 498 GLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITY 557
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I+ YC+EK+F++ + M ++ +P+ T TI++ L K + +A ++++M S
Sbjct: 558 NSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLS 617
Query: 311 DDCLTDTSFYSSLI 324
D Y++ I
Sbjct: 618 TGSHPDVFIYTAFI 631
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 23/247 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G+CK S A + + M + SP+ +Y I +CR K+ K L +M
Sbjct: 382 YNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKML 441
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
E+ +P+V+T I++H K + A K+ M + D YS I L K
Sbjct: 442 ERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVE 501
Query: 330 --------------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+IY+T+I C + + L K+ C P+ T+ +
Sbjct: 502 EARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLI 561
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTH 434
C +K K+ L++++ M+ + I P T+ +L + L K A + D++L+
Sbjct: 562 DGYCKEKNFKEARLLVDI---MIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLST 618
Query: 435 ATEQRTF 441
+ F
Sbjct: 619 GSHPDVF 625
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 121/312 (38%), Gaps = 65/312 (20%)
Query: 156 IDELSNGYVSLAAM-------STVMR---RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205
++ + NGY L + S +++ LDT + L+ + +V A +FL
Sbjct: 207 LNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMP 266
Query: 206 DCISLSSQI-FDVLIHGWCKTRKSDYAQK------------------------------- 233
+ L +++ + LIHG+C+ R+ D A K
Sbjct: 267 NKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKT 326
Query: 234 ----AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
KEM + P+ +YT I C + +F L M EKG PSV+T ++
Sbjct: 327 EALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALI 386
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE 349
K AL++ M+S++C S R YN +I C
Sbjct: 387 DGYCKKGLSASALEILSLMESNNC--------------SPNAR--TYNELILGFCRGKNI 430
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
A+ L K+ E +P+ T+ + C + + +L+LM E G+VP E T+
Sbjct: 431 HKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNE---SGLVPDEWTY 487
Query: 410 KMLAEELEKKSL 421
+ + L K+ L
Sbjct: 488 SVFIDTLCKRGL 499
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 92/243 (37%), Gaps = 31/243 (12%)
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
+L+D ++KR+ I ++ + +LI K + D A +M G
Sbjct: 575 LLVDIMIKRD---------------IEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTG 619
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
PD YT FI YC + + + +M KG P + T+ + A + I A
Sbjct: 620 SHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAF 679
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKA-------------VRFLIYNTMISSACVRSEE 349
+ ++M C YS LI LS A + + + S+ R +
Sbjct: 680 GILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDY 739
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
L L K+ E C P+ T+ + + C ++ + + M+E KG P E +
Sbjct: 740 EFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKE---KGQSPNEDIY 796
Query: 410 KML 412
L
Sbjct: 797 NSL 799
>gi|356495741|ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Glycine max]
Length = 523
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 146/345 (42%), Gaps = 45/345 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------------ 158
F WAK+ G+ H+ +++ +VE LG K+F ++W+ + E+ E
Sbjct: 98 FLWAKSIPGFQHSVMSFHILVEILGSCKQFAILWDFLTEMRESHHYEINSEIFWLIFRAY 157
Query: 159 ----LSNGYV-SLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
L +G + S M + + L+ L KR V A ++F + K+ SL+++
Sbjct: 158 SQANLPDGAIRSFNRMDEFGVKPTIHDLDKLLFILCKRKHVKQAQQLFHQAKNRFSLTAK 217
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ +LI GW + S+ A + M + G D ++Y ++ C+ + +M
Sbjct: 218 TYSILISGWGEIGDSEKACDLFQAMLEQGCPVDLLAYNNLLQALCKGGRVDEAKNIFHDM 277
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK---- 329
K +P T +I +H+ A + A +V +KM+ + L + Y+ +I L K
Sbjct: 278 LSKRVEPDAFTYSIFIHSYCDADDVQSAFRVLDKMRRYNLLPNVFTYNCIIKQLCKNEHV 337
Query: 330 --AVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
A + L YN + + C E AL+L ++E+D C PD T+
Sbjct: 338 EEAYQLLDEMISRGVKPDTWSYNAIQAYHCDHCEVNRALRLMFRMEKDICLPDRHTYNMV 397
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
LK+ R V + M+ K P ST+ ++ KK
Sbjct: 398 LKLLIRIGRFDK---VTEVWENMVDKKFYPSVSTYSVMIHGFCKK 439
>gi|449431996|ref|XP_004133786.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
mitochondrial-like [Cucumis sativus]
gi|449477985|ref|XP_004155184.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
mitochondrial-like [Cucumis sativus]
Length = 485
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 145/342 (42%), Gaps = 46/342 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG--YVSLAAMSTVMR 174
F WA Q GY H+ Y++M+ LGK +KF W L+ E+ + G V+ + ++R
Sbjct: 64 FVWAGKQPGYAHSVREYHSMISILGKMRKFDTAWALIDEMRGGTPGSSLVTPQTLLIMIR 123
Query: 175 R-----------------------LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211
R + L+ L + +V A + KD +
Sbjct: 124 RYCAVHDVAKAINTFYAHKRFGFNIGLEEFQSLLSALCRYKNVKDAEYLLFCNKDVFPFN 183
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
++ F+++++GWC ++ KEM + G S D VSY I Y + ++ KV +
Sbjct: 184 TKSFNIILNGWCVIGSLRDTERVWKEMTRRGISHDAVSYASCISCYSKVRNLHKVLRLFE 243
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
+M+ P V+H+L K + + EA + + M+ + + Y+S+I L KA
Sbjct: 244 DMKRMKIDPDRKVYNAVIHSLAKGRCLKEAADLIKTMEEKGIIANVVTYNSVIKPLCKAR 303
Query: 332 RF----LIYNTMISSAC-------------VRSEEGNALKLRQKIEEDSCKPDCETHARS 374
RF ++ ++ +R+EE +L +K+ C P +T+
Sbjct: 304 RFDEARAVFEELLQRGLCPTIQTYHAFLRFLRTEE-EIFELLKKMRTMGCNPTTDTYIML 362
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ C +++ + V + EM GI P S++ +L L
Sbjct: 363 IRKFCRWRQLDN---VSRIWHEMSENGISPDRSSYIVLIHGL 401
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 29/193 (15%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDE---LSN--GYVSLAAMSTVMRRLDTRAMSVLM 185
+ YNA++ +L K + +L+K ++E ++N Y S+ RR D +
Sbjct: 255 KVYNAVIHSLAKGRCLKEAADLIKTMEEKGIIANVVTYNSVIKPLCKARRFDE--ARAVF 312
Query: 186 DTLVKRN--SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+ L++R Y FL+F + +IF++L K M+ M G
Sbjct: 313 EELLQRGLCPTIQTYHAFLRF---LRTEEEIFELL--------------KKMRTM---GC 352
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+P +Y I +CR + V EM E G P + +++H L ++ +A K
Sbjct: 353 NPTTDTYIMLIRKFCRWRQLDNVSRIWHEMSENGISPDRSSYIVLIHGLFLNGKLEDAHK 412
Query: 304 VYEKMKSDDCLTD 316
Y +MK D L +
Sbjct: 413 YYLEMKEKDLLPE 425
>gi|356561955|ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like [Glycine max]
Length = 622
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 97/424 (22%), Positives = 181/424 (42%), Gaps = 99/424 (23%)
Query: 101 RYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV------- 153
R+ S K++ +L F WA+T+ + P+ ++A+V AL K+++F W+LV
Sbjct: 133 RFGSSPKLLHSL----FLWAQTRPAFRPGPKLFDAVVNALAKAREFDAAWKLVLHHAEKD 188
Query: 154 KEIDELSNGYVSLAAMSTVMRRLDTRAMS---------------------------VLMD 186
E + VS+ + ++RR MS +LMD
Sbjct: 189 GEEEGEKERLVSVGTFAIMIRRYARAGMSKLAIRTYEFATNNKSIVDSGSEMSLLEILMD 248
Query: 187 TLVKRNSVAHAYKVFLKFKDCISL----SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
+L K SV A + FL +K + L S ++++++++GW + RK ++ EM +
Sbjct: 249 SLCKEGSVREASEYFL-WKKELDLSWVPSIRVYNIMLNGWFRLRKLKQGERLWAEM-KEN 306
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
P V+Y +E YCR + K + +M ++G P+ I ++ AL +A + EAL
Sbjct: 307 MRPTVVTYGTLVEGYCRMRRVEKALEMVGDMTKEGIAPNAIVYNPIIDALAEAGRFKEAL 366
Query: 303 KVYEKMKSDDCLTDTSFYSSLI---------FILSKAVRFLIYNTMISSA---------- 343
+ E+ + S Y+SL+ SK ++ +I + SA
Sbjct: 367 GMLERFHVLEIGPTDSTYNSLVKGFCKAGDLVGASKILKMMISRGFLPSATTYNYFFRYF 426
Query: 344 --CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR------ 395
C + EEG + L K+ + PD T+ +KM C ++++ + V MR
Sbjct: 427 SRCRKIEEG--MNLYTKLIQSGYTPDRLTYHLLVKMLCEEEKLDLAVQVSKEMRHNGYDM 484
Query: 396 --------------------------EMLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
+M+ +GIVPQ T + + +L+K+ + +++
Sbjct: 485 DLATSTMLVHLLCKVRRLEEAFVEFEDMIRRGIVPQYLTFQRMKADLKKQGMTEMAQKLC 544
Query: 430 ELLT 433
+L++
Sbjct: 545 KLMS 548
>gi|326504802|dbj|BAK06692.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 522
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 139/335 (41%), Gaps = 56/335 (16%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDE-----------LSNGYVSLAAMSTVMRRLD-- 177
+ Y+A+V+ALG++ +F W LV E L+ YV+ +R D
Sbjct: 115 DAYDAVVDALGRAHQFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGLTRQAVRAFDDM 174
Query: 178 ---------TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS 228
+ + L+DTL K A +VF K K + +++ +LI+GWCK +S
Sbjct: 175 EAFLGREPDAQEFTTLLDTLCKYKYPKVAVEVFNKRKYKYEPNEKMYTILIYGWCKVNRS 234
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----------EKDFRKVDYTLKEMQEKGC 278
D AQK +K+M HG P+ V+Y + CR ++ + LKEM ++G
Sbjct: 235 DMAQKFLKDMIDHGIEPNIVTYNILLNGICRHASLHPDNRFDRTVNAAENLLKEMNDRGI 294
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----- 333
+P V + +I++H +A + L ++ MK + Y+S+I L+ R
Sbjct: 295 EPDVTSYSIILHVYSRAHKAELCLCMFRSMKDRGICPTVATYTSVIKCLASCGRLEDAES 354
Query: 334 --------------LIYNTMISSACVRSEEGNALKLRQKIEE--DSCKPDCETHARSLKM 377
YN R + AL+L K++ PD ++ L M
Sbjct: 355 LLGEMVSEGVCPSPATYNCFFKEYRGRKDVSGALELYNKMKAPCSPTAPDIHSYNILLGM 414
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
R + V+ L +M + + P ++ +L
Sbjct: 415 FIKLDRHET---VMELWNDMCERAVGPDLDSYTLL 446
>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
Length = 552
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 141/321 (43%), Gaps = 38/321 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY+ +++ L K K +L+ ++ EL R +T S ++D L+K
Sbjct: 245 TYSTLIDGLSKMAKMDEALQLLAKMVELGC-------------RANTVTYSTVVDGLLKV 291
Query: 192 NSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A V + +D L + ++ LI G+ K ++ A ++EM + GF P V+Y
Sbjct: 292 GRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTY 351
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T CR F + L M +GC P+ IT + ++ L KA ++ EAL +EKM
Sbjct: 352 TTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMAR 411
Query: 311 DDCLTDTSF-YSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEG 350
D+ + YS+LI L KA + + ++ +I+ C
Sbjct: 412 DEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRID 471
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
L+L + + E C PD T+A + C R+ + +L ++M S G+ P ST +
Sbjct: 472 TGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDE---AFDLFQQMRSDGLSPDRSTRR 528
Query: 411 -MLAEELEKKSLGNAKERIDE 430
M+ LE +AK DE
Sbjct: 529 TMIHGLLEVNRDEDAKRIQDE 549
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 21/204 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMF--QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
F ++I G CK + + A + + EMF + G SPD +++ ++ C+E+ K
Sbjct: 174 FGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKR 233
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
E+GC+P+V+T + ++ L K ++ EAL++ KM C +T YS+++ L K R
Sbjct: 234 ALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGR 293
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
E + LRQ + + C PD T+ + ++R+++ +
Sbjct: 294 M---------------EDAVVVLRQ-MRDAGCLPDAVTYNTLIDGFFKRQRLRE---AVG 334
Query: 393 LMREMLSKGIVPQESTHKMLAEEL 416
L+REML G P T+ L L
Sbjct: 335 LLREMLEAGFHPSVVTYTTLCHGL 358
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 132/311 (42%), Gaps = 39/311 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY A+++ LGK ++ VKE +L + TV+ + ++D L K
Sbjct: 32 TYGALIDGLGKQRR-------VKEAYDLFEEARAKGCHPTVV------TYNTMIDGLCKC 78
Query: 192 NSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ +A ++ + + LI G C+ + D K ++EM G +P+ V+
Sbjct: 79 GRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVT 138
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM- 308
Y + + ++ L++M GC P +IT +++ L K +I A +V ++M
Sbjct: 139 YNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMF 198
Query: 309 -----KSDDCLTDTSFYSSL-----------IF--ILSKAVR--FLIYNTMISSACVRSE 348
S D +T S L +F L + R + Y+T+I ++
Sbjct: 199 MIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAK 258
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
AL+L K+ E C+ + T++ + RM+D ++VL R+M G +P T
Sbjct: 259 MDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVL---RQMRDAGCLPDAVT 315
Query: 409 HKMLAEELEKK 419
+ L + K+
Sbjct: 316 YNTLIDGFFKR 326
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 19/216 (8%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
+I G CK+RK D A K+M PD V+Y I+ +++ ++ +E + KG
Sbjct: 1 MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337
C P+V+T ++ L K +I AL +Y DD F +++ Y+
Sbjct: 61 CHPTVVTYNTMIDGLCKCGRIENALTLY-----DDMAIHFGFRPTVV----------TYS 105
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
T+I C E KL +++ C P+ T+ + + R K+ +L+ +M
Sbjct: 106 TLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKE---AFSLLEQM 162
Query: 398 LSKGIVPQESTHKMLAEELEKKSLGNAKER-IDELL 432
+ G P+ T ++ + L K+ A R +DE+
Sbjct: 163 AANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMF 198
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 21/207 (10%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G+ + TY + L +S +F E V+ +D ++ + A++ S
Sbjct: 341 EAGFHPSVVTYTTLCHGLCRSGRFD---EAVEILDYMAARGCAPNAIT----------YS 387
Query: 183 VLMDTLVKRNSVAHAYKVFLKFK--DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++D L K V A F K + ++ + LI G CK K D A + ++ M +
Sbjct: 388 SIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIR 447
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTL---KEMQEKGCKPSVITCTIVMHALEKAKQ 297
G PD V+++ I C D ++D L + M E+GC P ++T ++ L +A +
Sbjct: 448 AGRIPDVVTFSILINGLC---DAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASR 504
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ EA ++++M+SD D S ++I
Sbjct: 505 VDEAFDLFQQMRSDGLSPDRSTRRTMI 531
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/380 (21%), Positives = 143/380 (37%), Gaps = 91/380 (23%)
Query: 132 TYNAMVEAL---GKSKK-------------------FGLMWELVKEIDELSNGYVSLAAM 169
TYN +V AL G+SK+ FGL+ + + + E+ + + M
Sbjct: 138 TYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEM 197
Query: 170 STVMRRL--DTRAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKT 225
+ L D + ++D L K + A+ VF + + C + + LI G K
Sbjct: 198 FMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGC-RPNVVTYSTLIDGLSKM 256
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC------- 278
K D A + + +M + G + V+Y+ ++ + L++M++ GC
Sbjct: 257 AKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTY 316
Query: 279 ----------------------------KPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
PSV+T T + H L ++ + EA+++ + M +
Sbjct: 317 NTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAA 376
Query: 311 DDCLTDTSFYSSLIFILSKAVR--------------------FLIYNTMISSACVRSEEG 350
C + YSS++ L KA R + Y+ +I C +
Sbjct: 377 RGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKID 436
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A + +++ PD T + + C R+ G L L R M +G VP T+
Sbjct: 437 EAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTG---LELFRGMAERGCVPDMVTYA 493
Query: 411 MLAEELEKKSLGNAKERIDE 430
L + L + S R+DE
Sbjct: 494 TLVDRLCRAS------RVDE 507
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEM 238
A S L+D L K + AY+ + + + F +LI+G C + D + + M
Sbjct: 421 AYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGM 480
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
+ G PD V+Y ++ CR + ++M+ G P T ++H L + +
Sbjct: 481 AERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRD 540
Query: 299 YEALKVYEKMKS 310
+A ++ ++ S
Sbjct: 541 EDAKRIQDEENS 552
>gi|225430190|ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial [Vitis vinifera]
gi|296081989|emb|CBI20994.3| unnamed protein product [Vitis vinifera]
Length = 597
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 104/433 (24%), Positives = 179/433 (41%), Gaps = 94/433 (21%)
Query: 78 ISSHALSED--HETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNA 135
+SS A ED + T + S +L+ + D + L F WA Q G+ + +N+
Sbjct: 84 LSSGAPLEDALNRTGIKPCSGLLQAIFSHFDASPKPLFTL-FRWAMKQPGFESSMTLFNS 142
Query: 136 MVEALGKSKKFGLMWELVKEIDELSNG----YVSLAAMSTVMRRLDTRAMS--------- 182
M++ L KS+ F W LV +D + G VS + ++RR M+
Sbjct: 143 MIDVLAKSRAFDSAWLLV--LDRIEGGEEPELVSSNTFAVLIRRYARAGMTLSAIRTFEF 200
Query: 183 ------------------VLMDTLVKRNSVAHAYKVFLKFKDCIS---LSSQIFDVLIHG 221
+L+D+L K V A + F + + S ++++VL++G
Sbjct: 201 AFSLDSIRDRDSEWSLFKILLDSLCKEGHVRVASEYFDQQRGLDPSWVPSIRVYNVLLNG 260
Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
W ++RK A++ + M + P V+Y +E YCR + K + EM+ KG +P+
Sbjct: 261 WFRSRKLKRAEQLWRTMKRENVKPTVVTYGTLVEGYCRMRRSEKAIELVGEMRGKGIEPN 320
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------FILSKAVR 332
VI ++ +L +A + EA+ + E+ + S Y+SL+ SK ++
Sbjct: 321 VIVYNPIIDSLAEAGRFKEAMGMMERCLVSETGPTISTYNSLVKGFCKAGDLVGASKVLK 380
Query: 333 FLI----------YNTMIS--SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
+I YN S C ++EEG + L K+ E PD T+ +KM C
Sbjct: 381 MMISRGFDPTLTTYNYFFRYFSRCGKTEEG--MNLYTKMIESGHTPDRLTYHLLIKMMCE 438
Query: 381 KKRMKDGMLVLNLMR--------------------------------EMLSKGIVPQEST 408
++R+ + V MR +M+ +GIVPQ T
Sbjct: 439 EERLDLAVQVSKEMRARGCDLDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGIVPQYLT 498
Query: 409 HKMLAEELEKKSL 421
+ + L K+ L
Sbjct: 499 FERMNNALRKRGL 511
>gi|356534319|ref|XP_003535704.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Glycine max]
Length = 507
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 162/358 (45%), Gaps = 63/358 (17%)
Query: 103 PSPDKVVEALKCFC---------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
PSP+ V+E L F WA+ Q+ + HT E ++A++EALGK ++F ++W LV
Sbjct: 84 PSPELVLEVLNKLSNAGVLALSFFRWAEKQSEFKHTTEAFHALIEALGKIRQFKMIWTLV 143
Query: 154 KEIDE---LSNGYVSLAAMSTVMRRLDTRAMSV------------------LMDTLVKRN 192
++ + L++ SL A R A+ L+D L K
Sbjct: 144 NDMKQRKLLTSDTFSLVARRYARARKAKEAIKTFEKMEHYGLKPHVSDFNKLVDVLCKSK 203
Query: 193 SVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
SV A++VF K + + L I + +L+ GW + + + +EM GF D V+Y
Sbjct: 204 SVEEAHEVFDKMRK-LRLDPDIKSYTILLEGWSQQQNLIKVNEVCREMEDKGFQLDVVAY 262
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV-ITCTIVMHALEKAKQIYEALKVYEKMK 309
+ +C+ K F + EM+ +G +PS + CT++ + L K++ EAL+ +E K
Sbjct: 263 GIIMNAHCKAKKFDEAIGLYHEMKARGVRPSPHVYCTLI-NGLGSDKRLDEALEFFEVSK 321
Query: 310 SDDCLTDTSFYSSLIFILSKAVRF-----------------------LIYNTMISSACVR 346
+ + + Y++++ ++R ++ + +I R
Sbjct: 322 ASGFVPEAPTYNAVVGAYCWSLRMDDAYRMVGEMKKCGIGPNSRTFDIVLHHLIKGR--R 379
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
EE +++ R E C+P T+ ++M C+++ + + V + EM KGI+P
Sbjct: 380 IEEASSVFRRMNGGEFGCEPSVSTYEIMVRMFCNEELLDMAVAVWD---EMKGKGILP 434
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 16/202 (7%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G +P Y ++ LG K+ E E+ + S G+V A + + S+
Sbjct: 289 GVRPSPHVYCTLINGLGSDKRLDEALEFF-EVSKAS-GFVPEAPTYNAV--VGAYCWSLR 344
Query: 185 MDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM--FQH 241
MD AY++ + K C I +S+ FD+++H K R+ + A + M +
Sbjct: 345 MDD---------AYRMVGEMKKCGIGPNSRTFDIVLHHLIKGRRIEEASSVFRRMNGGEF 395
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G P +Y + +C E+ EM+ KG P + + ++ AL ++ EA
Sbjct: 396 GCEPSVSTYEIMVRMFCNEELLDMAVAVWDEMKGKGILPGMHMFSTLVCALCHESKLDEA 455
Query: 302 LKVYEKMKSDDCLTDTSFYSSL 323
K +++M +S+L
Sbjct: 456 CKYFQEMLDVGIRPPAKMFSTL 477
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ ++ +C + + D A + + EM + G P+ ++ + H + + + + M
Sbjct: 332 YNAVVGAYCWSLRMDDAYRMVGEMKKCGIGPNSRTFDIVLHHLIKGRRIEEASSVFRRMN 391
Query: 275 --EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
E GC+PSV T I++ + + A+ V+++MK L +S+L+
Sbjct: 392 GGEFGCEPSVSTYEIMVRMFCNEELLDMAVAVWDEMKGKGILPGMHMFSTLV 443
>gi|242063152|ref|XP_002452865.1| hypothetical protein SORBIDRAFT_04g033840 [Sorghum bicolor]
gi|241932696|gb|EES05841.1| hypothetical protein SORBIDRAFT_04g033840 [Sorghum bicolor]
Length = 551
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/394 (24%), Positives = 171/394 (43%), Gaps = 61/394 (15%)
Query: 73 NEQSRISSHALSEDHETDVDKVSEIL-RKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPE 131
NE + + AL + T + V+++L R RY E L F WA Q GY H
Sbjct: 92 NEGTEAALDALGTELTTPL--VADVLHRLRYE------EKLAFRFFAWASHQDGYSHESA 143
Query: 132 TYNAMVEALG----KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR------------- 174
TYN +++ L KS++FG++ ++ + V + + ++R
Sbjct: 144 TYNDIIDILSGTRYKSRQFGVLCNVLDHMKRHGTRSVPVEDLLEILRAYTEKHLTHMRKL 203
Query: 175 ------RL----DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCK 224
RL +T A++VL+D K V A VF + K + +++ + +L GWC+
Sbjct: 204 AKKRRVRLRTPPETDALNVLLDAFCKCGMVKEAEAVFGRVKRRLLGNAETYSILFFGWCR 263
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG---CKPS 281
R A K ++EM Q +P+ +Y IE +C + + M+ +G P+
Sbjct: 264 ARDPKKAMKVLEEMIQMKHTPESFTYIAAIESFCSAGLVSEARELFEFMRTEGSTISSPT 323
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILSKAVRFL- 334
T +I++ AL KA ++ E ++ M+S C+ D S Y LI L A R L
Sbjct: 324 AKTYSIMIVALAKADRMEECFELLSDMRSCGCMPDVSTYKELIEGMCLVGKLDAAYRVLE 383
Query: 335 ------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
YN ++ C + +AL+L +++ E C+P T+ + M
Sbjct: 384 EMGRAGFPPDIVTYNCFLNVLCSLRKADDALELCERMIEAHCEPSVHTYNMLMVMFFE-- 441
Query: 383 RMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
M + L++ EM ++G T++++ + L
Sbjct: 442 -MGEAHRALDIWLEMDTRGCQRAIDTYEIMIDGL 474
>gi|195655361|gb|ACG47148.1| ATP binding protein [Zea mays]
Length = 551
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 133/304 (43%), Gaps = 49/304 (16%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALG----KSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
F WA Q GY H P TYN +++ L KS++FG++ ++ + + V + + +
Sbjct: 129 FAWASQQDGYSHEPTTYNDIIDILSGTRYKSRQFGVLCNVLDHMKRHGSRSVPVEGLLEI 188
Query: 173 -----------MRRL------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209
MR+L +T A++VL+D K V A VF + K +
Sbjct: 189 LRAYTEKHLTHMRKLAKKRRVRMRTPPETDALNVLLDAFCKCGMVKEAEAVFGRVKRKLL 248
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+++ + L GWC+ R A K ++EM Q +P+ +Y IE +C +
Sbjct: 249 GNAETYSTLFFGWCRARDPKKAMKVLEEMIQMKHTPESFTYVAAIESFCSAGLVSEAREL 308
Query: 270 LKEMQEKG---CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-- 324
+ M+ +G P+ T +I++ AL KA ++ E ++ M++ C+ D + Y LI
Sbjct: 309 FEFMRTEGLTVSSPTAKTYSIMIVALAKADRMEECFELLSDMRTCGCMPDVTTYKDLIEG 368
Query: 325 ----FILSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
L A R L YN ++ C +AL+L +++ E C+P
Sbjct: 369 MCLVGRLDAAYRVLDEMGRAGFPPDIVTYNCFLNVLCSLRNADDALELCERMIEAHCEPS 428
Query: 368 CETH 371
T+
Sbjct: 429 VHTY 432
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 13/203 (6%)
Query: 128 HTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
HTPE TY A +E+ + LV E EL + + + + S+++
Sbjct: 282 HTPESFTYVAAIESFCSAG-------LVSEAREL---FEFMRTEGLTVSSPTAKTYSIMI 331
Query: 186 DTLVKRNSVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
L K + + +++ + C + + LI G C + D A + + EM + GF
Sbjct: 332 VALAKADRMEECFELLSDMRTCGCMPDVTTYKDLIEGMCLVGRLDAAYRVLDEMGRAGFP 391
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD V+Y CF+ C ++ + M E C+PSV T ++M + + + AL +
Sbjct: 392 PDIVTYNCFLNVLCSLRNADDALELCERMIEAHCEPSVHTYNMLMMMFFEMGEAHRALDI 451
Query: 305 YEKMKSDDCLTDTSFYSSLIFIL 327
+ +M C Y +I+ L
Sbjct: 452 WLEMDKRGCQRAIDTYEIMIYGL 474
>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 544
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 157/338 (46%), Gaps = 38/338 (11%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F +++ G + T N +++AL K + VK +DE+ AM +
Sbjct: 188 FKNCRSKYGVLPNVFTCNILIKALCKKND---VESAVKVLDEM-------PAMGMIP--- 234
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL-SSQIFDVLIHGWCKTRKSDYAQKAM 235
+ + ++ R + +A KVF + D L + + +L++G+C+ + A K M
Sbjct: 235 NVVTYTTILGGYSSRGDMVNANKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLM 294
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+M ++G P+ V+Y +E YC+EK + L +M E+ PS C V+ L +A
Sbjct: 295 DDMGENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCEA 354
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR------------------FLIYN 337
+I EA +++++M +C+ D + S+LI L K + L YN
Sbjct: 355 GKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGEFERGAIPSLLTYN 414
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
T+I+ C + E A KL + E KP+ T+ +K K+G+ +L EM
Sbjct: 415 TLIAGMCEKGELSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSKIGNAKEGIRIL---EEM 471
Query: 398 LSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA 435
L +P +ST+ +L EEL K + + +D++++ A
Sbjct: 472 LDNRCMPNKSTYAILIEELCKMGM---EGEVDKVVSMA 506
>gi|356560394|ref|XP_003548477.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
mitochondrial-like [Glycine max]
Length = 612
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 148/346 (42%), Gaps = 55/346 (15%)
Query: 104 SPDKVVEALK--------CFCF-TWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVK 154
SP+ VVE L F F WA Q GY H+ Y++M+ LGK +KF W L++
Sbjct: 157 SPELVVEVLSRTRNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIE 216
Query: 155 EIDELSNGYVSLAAMSTVM----------------------RRLDTRA----MSVLMDTL 188
E+ NG +SL T++ +R + R L+ L
Sbjct: 217 EMRGGRNG-LSLVTPQTLLIMIRKYCAVHDVARAINTFYAYKRFNFRVGLEEFHSLLSAL 275
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCK-TRKSDYAQKAMKEMFQHGFSPDG 247
+ +V A + KD L ++ F+++++GWC + +A++ EM + D
Sbjct: 276 CRYKNVQDAEYLLFCNKDVFPLDTKSFNIILNGWCNLIVSTSHAERIWHEMIKRRIQHDV 335
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
VSY I Y + KV EM+++ P V++AL K + + EA+ +
Sbjct: 336 VSYGSIISCYSKSSKLYKVLRMFDEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNLIGT 395
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRF----LIYNTMISS-------------ACVRSEEG 350
M+ +D D Y+SLI L KA + +++ M+ +R++E
Sbjct: 396 MEGNDVTPDVVTYNSLIKPLCKAHKVDEAKQLFDEMLKRHLSPTIQTFHAFFRILRTKE- 454
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
+L K++E C P ET+ ++ C ++ D + + MRE
Sbjct: 455 EVFELLDKMKELRCYPTIETYIMLIRKFCRWCQLDDVFKIWDAMRE 500
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 88/198 (44%), Gaps = 17/198 (8%)
Query: 128 HTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT 187
H +Y +++ KS K ++++++ DE+ ++ D + + ++
Sbjct: 333 HDVVSYGSIISCYSKSSK---LYKVLRMFDEMKKRKITP----------DRKVYNAVIYA 379
Query: 188 LVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
L K V A + + + ++ ++ LI CK K D A++ EM + SP
Sbjct: 380 LAKGRLVKEAVNLIGTMEGNDVTPDVVTYNSLIKPLCKAHKVDEAKQLFDEMLKRHLSPT 439
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
++ F R K+ +V L +M+E C P++ T +++ + Q+ + K+++
Sbjct: 440 IQTFHAFFR-ILRTKE--EVFELLDKMKELRCYPTIETYIMLIRKFCRWCQLDDVFKIWD 496
Query: 307 KMKSDDCLTDTSFYSSLI 324
M+ D+ D S Y LI
Sbjct: 497 AMREDEISHDRSSYIVLI 514
>gi|147862837|emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]
Length = 927
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 144/325 (44%), Gaps = 46/325 (14%)
Query: 111 ALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMS 170
A + FC WA + G+ H TYNAM+ LG++++F M ++ E+ E G +++ S
Sbjct: 252 AFRFFC--WAGQKAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGE--KGLLTMETFS 307
Query: 171 T-------------------VMRRLDTRA----MSVLMDTLVKRNSVAHAYKVFLKFKDC 207
+M+R + A ++ L+D L + A +F K +D
Sbjct: 308 IAIKAFAAAKERKKAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDR 367
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ + + + VL++GWC+ + A + EM GF PD +++ +E + K
Sbjct: 368 FTPNLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAI 427
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ M+ KG P+V T TI++ L K ++ EA++ +++M C D + Y+ LI
Sbjct: 428 KLFEVMKAKGPSPNVRTYTILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGF 487
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+ L ++++E C D T+ +K+ +++ D
Sbjct: 488 GNQKKM----------------DKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDD- 530
Query: 388 MLVLNLMREMLSKGIVPQESTHKML 412
+ + ++M+ GI P T+ M+
Sbjct: 531 --AVRIYKKMIQNGIQPTLHTYNMM 553
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 32/208 (15%)
Query: 88 ETDVDKVSEILRKRYPSPD---------------KVVEALKCFCFTWAKTQTGYMHTPET 132
++D K+ E+++ + PSP+ K+ EA++ F +G
Sbjct: 423 KSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMKEAVEYFD---EMVDSGCQPDAAV 479
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
Y ++ G KK ++ L+KE+ E G + D R + L+ + R
Sbjct: 480 YTCLITGFGNQKKMDKVYALLKEMKE--KGCPA-----------DGRTYNALIKLMTNRQ 526
Query: 193 SVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
A +++ K ++ I + +++++ + TR + KEM + G PD SY
Sbjct: 527 MPDDAVRIYKKMIQNGIQPTLHTYNMMMKSYFYTRNYEMGCAVWKEMGRKGCCPDDNSYI 586
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCK 279
FI R + L+EM EKG K
Sbjct: 587 VFIGGLIRHGRSEEACRYLEEMIEKGMK 614
>gi|115455503|ref|NP_001051352.1| Os03g0761300 [Oryza sativa Japonica Group]
gi|14488357|gb|AAK63924.1|AC084282_5 unknown protein [Oryza sativa Japonica Group]
gi|108711214|gb|ABF99009.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549823|dbj|BAF13266.1| Os03g0761300 [Oryza sativa Japonica Group]
gi|125545804|gb|EAY91943.1| hypothetical protein OsI_13630 [Oryza sativa Indica Group]
gi|125588003|gb|EAZ28667.1| hypothetical protein OsJ_12678 [Oryza sativa Japonica Group]
Length = 484
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 80/357 (22%), Positives = 153/357 (42%), Gaps = 59/357 (16%)
Query: 117 FTWAKTQ--TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR 174
F WA+ Q G HT +Y+ +V +L K +++ LMW++V + G V++ +MR
Sbjct: 86 FEWARRQKRGGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRR--EGAVNVETFGIIMR 143
Query: 175 RL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211
+ + A + L+ L K +V A ++F K S
Sbjct: 144 KYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKMNSRFSPD 203
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
++ + +L+ GW + ++ EM G PD V+Y ++ C+ + ++
Sbjct: 204 AKTYSILLEGWGRAPNLPKMREVYSEMLDAGCEPDIVTYGIMVDSLCKTGRVEEAVRVVQ 263
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
+M +GC+P+ ++++H +I +A+ + M+ D + D Y++L+ KA
Sbjct: 264 DMTSRGCQPTTYIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDIVVYNALVSAFCKAK 323
Query: 332 RF-----------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
+F +I N +IS R +E + R+ I+ C+PDC
Sbjct: 324 KFENAFRVLNDMEGHGITTNSRTWNIILNHLISLG--RDDEAYKV-FRRMIK--CCQPDC 378
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNA 424
+T+ +KM C +++ + V MR K +P T +L L +K+ + A
Sbjct: 379 DTYTMMIKMFCENDKVEMALKVWKYMR---LKQFLPSMHTFSVLINGLCDKREVSQA 432
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 13/149 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
YNA+V A K+KKF N + L M ++R +++++ L+
Sbjct: 311 VYNALVSAFCKAKKF-------------ENAFRVLNDMEGHGITTNSRTWNIILNHLISL 357
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
AYKVF + C + ++I +C+ K + A K K M F P +++
Sbjct: 358 GRDDEAYKVFRRMIKCCQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTFS 417
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
I C +++ + L++M EKG +P
Sbjct: 418 VLINGLCDKREVSQACVLLEDMIEKGIRP 446
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 166/386 (43%), Gaps = 56/386 (14%)
Query: 97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI 156
I+ + +++ +AL CF K + TYN +V L K++ +E++KE+
Sbjct: 12 IIIDGFCKANQLKQALACF----EKMREFVAPNERTYNVVVNGLCKARLTSKAYEVLKEM 67
Query: 157 DELSNGYVSLAAMSTVMR------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL 210
+ + L STV+ +D RA +L + +V R+ +A + D +
Sbjct: 68 RDGKSVAPDLVTYSTVINGFCKQGEMD-RACEILRE-MVTRDGIAPDVVTYTSVVDGLCR 125
Query: 211 SSQI---------------------FDVLIHGWCKTRKSDYAQKAMKEMF-QHGFSPDGV 248
++ F LI GWC RK D A K KE+ + PD V
Sbjct: 126 DGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVV 185
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+YT I+ +C+ + K L M+ + C P+V+T + ++H L KA + +AL ++ +M
Sbjct: 186 TYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRM 245
Query: 309 KSDDCLTDTSFYSSLIFILSK-----AVRFLI--------------YNTMISSACVRSEE 349
S C+ + Y++LI L A R L+ YN ++ C
Sbjct: 246 TSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRI 305
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
A +L +++ SC PD T+ ++ C+ R+++ +L M+ + GI P T+
Sbjct: 306 EEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKT--AAGIDPDVVTY 363
Query: 410 KMLAEELEK-KSLGNAKERIDELLTH 434
++ + K A E I E++
Sbjct: 364 SIVVAGYSRAKRFVEAAEFIQEMIAR 389
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 104/259 (40%), Gaps = 26/259 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
S L+ L K + A +F + K C+ + + LIHG C K D A+ M EM
Sbjct: 223 SSLLHGLCKAGDLDQALDLFRRMTSKGCVP-NVVTYTTLIHGLCAAHKVDAARLLMDEMT 281
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
PD VSY ++ YCR + KEM K C P IT T ++ A ++
Sbjct: 282 ATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLE 341
Query: 300 EALKVYEKMKSDDCL-TDTSFYSSLIFILSKAVRF-------------------LIYNTM 339
EA + E MK+ + D YS ++ S+A RF + Y+++
Sbjct: 342 EARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSL 401
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I C +A+++ + + +P T + C R+ D L+ M +
Sbjct: 402 IDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALC---RLGDMDEAWKLLVAMAA 458
Query: 400 KGIVPQESTHKMLAEELEK 418
G+ P T+ L E +
Sbjct: 459 HGLEPGMVTYTTLLEGFSR 477
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/270 (19%), Positives = 115/270 (42%), Gaps = 27/270 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
DT + + L+D + + A ++F + L +I + L+ G+C + + A+ +
Sbjct: 288 DTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLL 347
Query: 236 KEM-FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ M G PD V+Y+ + Y R K F + ++EM + P+ +T + ++ L K
Sbjct: 348 ENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCK 407
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI--YNTMISSACVRSEEGNA 352
A ++ A++V + M ++K V + +N++I + C + A
Sbjct: 408 AGRVDHAMEVLKNM------------------VNKRVEPSVGTFNSVIGALCRLGDMDEA 449
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR-----EMLSKGIVPQES 407
KL + +P T+ L+ RM+ + +MR + +VP+++
Sbjct: 450 WKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQA 509
Query: 408 THKMLAEELEKKSLGNAKERIDELLTHATE 437
++ + + + A ++EL + E
Sbjct: 510 FSALIRGLCKAREIDKAMAVVEELRSRECE 539
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 25/156 (16%)
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------- 329
C+P+V+T TI++ KA Q+ +AL +EKM+ + + Y+ ++ L K
Sbjct: 3 CQPTVVTWTIIIDGFCKANQLKQALACFEKMR-EFVAPNERTYNVVVNGLCKARLTSKAY 61
Query: 330 ------------AVRFLIYNTMISSACVRSEEGNALK-LRQKIEEDSCKPDCETHARSLK 376
A + Y+T+I+ C + E A + LR+ + D PD T+ +
Sbjct: 62 EVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVD 121
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C +M ++REM KG+ P + T L
Sbjct: 122 GLCRDGKMDRA---CEMVREMKLKGVEPDKFTFSAL 154
>gi|357159762|ref|XP_003578551.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Brachypodium distachyon]
Length = 534
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 86/361 (23%), Positives = 151/361 (41%), Gaps = 53/361 (14%)
Query: 98 LRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEID 157
LR+ P P EAL F T + PE Y +M++ L K F L L+ E+
Sbjct: 108 LRRGIPFP----EALAFFNHVLPSLPTDSL--PELYASMMDLLAKHHHFPLARHLLDEMR 161
Query: 158 ELSNGYVSLAAMSTVMRRL-----------------------DTRAMSVLMDTLVKRNSV 194
+ S S ++ + R + D ++ L+ L K+
Sbjct: 162 KRSIPISSQVILALIRRYVRAGMSSEASDLFRSMEEYGGGVPDPAVLASLLGALSKKRLA 221
Query: 195 AHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI 254
+ A +F +K + ++ L+H WC++ D A++ EM Q G P+ +YT I
Sbjct: 222 SEAQALFDSYKSVFTPDVVLYTTLVHAWCRSGCLDKAEQVFAEMQQAGIMPNVYTYTAVI 281
Query: 255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
+ R + L +M + GC P+ T +M A KA + + L+V+ +M+ C
Sbjct: 282 DAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCD 341
Query: 315 TDTSFYSSLIFI--------LSKAVRFLI-------------YNTMISSACVRSEEGNAL 353
D Y+ L+ L A++ L+ +N M+ V A
Sbjct: 342 PDIITYNFLMETHCGKGQSNLDAAMKLLLKMIAKGCTPDCHTFNPMLKLVVVLGNVDAAH 401
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
KL ++++E CKP+ T+ +K+ K M +VL + ++M ++G+ P +T+ L
Sbjct: 402 KLYERMQELQCKPNVITYNLLMKLFGKDKSMD---MVLRIKKDMDAQGVEPNVNTYGALI 458
Query: 414 E 414
E
Sbjct: 459 E 459
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 70/148 (47%), Gaps = 10/148 (6%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D + ++ +V +V A+K++ + ++ + I +++L+ + K + D +
Sbjct: 380 DCHTFNPMLKLVVVLGNVDAAHKLYERMQELQCKPNVITYNLLMKLFGKDKSMDMVLRIK 439
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE-KGCKPSVITCTIVMHALEK 294
K+M G P+ +Y IE +C ++++ TL+EM E K KP +V+ L K
Sbjct: 440 KDMDAQGVEPNVNTYGALIETFCGRGNWKRAYATLREMLEVKSLKPKKPVYDMVLVLLRK 499
Query: 295 AKQIYE--------ALKVYEKMKSDDCL 314
A Q+ + A + + K SDD L
Sbjct: 500 AGQLRKHEELVELMADRGFIKRPSDDAL 527
>gi|357156708|ref|XP_003577549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like [Brachypodium distachyon]
Length = 522
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 91/393 (23%), Positives = 160/393 (40%), Gaps = 97/393 (24%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDE-----------LSNGYVSLAAMST-------- 171
+ Y+A+V+ALG++ +F W LV E L+ YV+ A M+
Sbjct: 115 DAYDAVVDALGRAHQFDAAWRLVVEAAADGAATSRTFAVLARRYVA-AGMTRQAVRAFDD 173
Query: 172 ----VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRK 227
V R D + L+DTL K A +VF K K + +++ +LI+GWCK +
Sbjct: 174 MEAFVGREPDAGEFTTLLDTLCKYKYPKVATEVFNKRKYKYEPNEKMYTILIYGWCKVNR 233
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----------EKDFRKVDYTLKEMQEKG 277
+D +QK +K+M HG P+ V+Y + CR ++ R + LKEM+++G
Sbjct: 234 NDMSQKFLKDMIDHGIEPNVVTYNILLNGVCRHASLHPDNRFDRTVRAAEDLLKEMRDRG 293
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF---- 333
+P V + +IV+H +A + L ++ MK + Y+S+I L+ R
Sbjct: 294 IEPDVTSYSIVLHVYSRAHKAELCLCMFRSMKDRGICPTVATYTSVIKCLASCGRLEDAE 353
Query: 334 ---------------LIYNTMISSACVRSEEGNALKLRQKIE------------------ 360
YN R + AL+L +K++
Sbjct: 354 RLLHEMASEGVCPSPATYNCFFKEYRGRKDVIGALELYKKMKAPASPTAPDIHSYHILLG 413
Query: 361 -------------------EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
E + PD +++ + C ++ ++ EM+ KG
Sbjct: 414 MFVKLNQHGTVTELWNDMCESTVGPDLDSYTLLIHGFCENEKWREA---CQFFMEMIEKG 470
Query: 402 IVPQESTHKMLAEELEK----KSLGNAKERIDE 430
+PQ+ T ++L L + ++ K+R+DE
Sbjct: 471 FLPQKITFEILYRGLIQADMLRTWRRLKKRVDE 503
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 131/287 (45%), Gaps = 30/287 (10%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQ 232
R D +S L+D L K ++ A ++ L+ + + + + +LIH CK ++ A+
Sbjct: 437 RPDVACLSTLIDALCKAAAIDSAQEL-LRMSIGMDCAPDVVAYSILIHALCKAKRLPEAE 495
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ M ++ PD V+Y ++ C+ + M+ G P V+T +IV+H+
Sbjct: 496 SWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSF 555
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRF 333
K + A K+ E+MK C+ D YS+LI L K A
Sbjct: 556 CKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNL 615
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ YNT+I C ++ A ++ + + + SC PD T+ + C+ R+++ VL
Sbjct: 616 VTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVL-- 673
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL--THATEQ 438
REM KG +P T+ L L+K N E +++LL ATE+
Sbjct: 674 -REMKDKGCLPDRMTYGTLLRALQKT---NNLELVEQLLKEMEATEE 716
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 123/276 (44%), Gaps = 33/276 (11%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP TYN++V L KS++F L++E+ + +TV+ D
Sbjct: 1190 TPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVI------------D 1237
Query: 187 TLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L K V AYK+FL+ D ++ + ++I CK R D A ++ M ++GF P
Sbjct: 1238 GLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDP 1297
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
++Y I+ +C+ + K L+ + KG P V+T +I + L K ++ +A ++
Sbjct: 1298 GAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELL 1357
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
E M + DT + YNT++ C S +A+ L + + + C+
Sbjct: 1358 ETMLRAGLVPDT----------------VTYNTLLKGFCDASLTEDAVDLFEVMRQCGCE 1401
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
PD T+ + KK KD L+ + + M+ G
Sbjct: 1402 PDNATYTTLVGHLVDKKSYKD--LLAEVSKSMVDTG 1435
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 149/348 (42%), Gaps = 50/348 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG-----YVSLAAMST 171
F WA+T+ GY H N ++ L K+ ++ +L + E G Y +L +S
Sbjct: 113 FEWAETRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTL--ISG 170
Query: 172 VMRRLDTRAMSVLMDTLVKRNSVAHA--YKVFLKF------------------KDCISLS 211
+R L D + ++ AHA +K L+ K C
Sbjct: 171 FIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPP-D 229
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
S ++ +I+G K+ + D A + ++EM +GF+P+ SY + +C+ + L+
Sbjct: 230 SVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLE 289
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL------IF 325
+M +GC P V++ T V++ L K Q+ EA +V +KM C + Y +L +
Sbjct: 290 QMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVG 349
Query: 326 ILSKAVRF-------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
L AV + YN ++ C R++ A ++ Q + + C PD ++
Sbjct: 350 DLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYS 409
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ C ++++ +L+ +M+ +G P + L + L K +
Sbjct: 410 TIISGFCKAGKLREAH---DLLEQMIRRGCRPDVACLSTLIDALCKAA 454
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 113/239 (47%), Gaps = 25/239 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ VL+ +CK K++ A ++ M + G+ P+ +Y ++ +C++ + + L M
Sbjct: 1056 YTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMI 1115
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
+KGC P+V++ V+ L KA +++E + + E+M S++C+ D ++++I + K R
Sbjct: 1116 QKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVD 1175
Query: 333 -----------------FLIYNTMISSAC--VRSEEGNALKLRQKIEEDSCKPDCETHAR 373
+ YN+++ C R ++ L LR+ + C PD T+
Sbjct: 1176 IAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYL-LREMTRKQGCSPDIITYNT 1234
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
+ C KR+ L +MLS G+ P + T+ ++ L K + + EL+
Sbjct: 1235 VIDGLCKSKRVDRAY---KLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELM 1290
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 141/324 (43%), Gaps = 39/324 (12%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA +Q GY H T N +++AL + K+ ++ + N M T
Sbjct: 831 FDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYR------NKLCCSPNMFT----- 879
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
++L+ L + + AY++ + + + + + +V+I G C RK D A +
Sbjct: 880 ----FTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELF 935
Query: 236 KEMFQHG-FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
KEM + G PD +Y+ ++ + +++M KGC P+V+T + ++H L K
Sbjct: 936 KEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCK 995
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
A ++ EA + ++M C + + YNT+I C A
Sbjct: 996 AGKLDEATALLQRMTRSGC----------------SPNIVTYNTIIDGHCKLGRIDEAYH 1039
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
L +++ + C+P+ T+ L C + +D + L+ M+ KG VP T+ L +
Sbjct: 1040 LLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDA---IGLVEVMVEKGYVPNLFTYNSLLD 1096
Query: 415 ELEKKSLGNAKERIDELLTHATEQ 438
KK + ER +LL+ ++
Sbjct: 1097 MFCKK---DEVERACQLLSSMIQK 1117
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 137/326 (42%), Gaps = 51/326 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYV-SLAAMSTVMRRL-------------- 176
TYN M+ L KS + L++E+ + NG+ ++ + +TV+
Sbjct: 232 TYNTMINGLSKSDRLDDAIRLLEEM--VDNGFAPNVFSYNTVLHGFCKANRVENALWLLE 289
Query: 177 ---------DTRAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKT 225
D + + +++ L K + V A +V K + C + + L+ G+C+
Sbjct: 290 QMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGC-QPNVITYGTLVDGFCRV 348
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
D A + +++M + G+ P+ ++Y + +CR D + L+ M + GC P I
Sbjct: 349 GDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINY 408
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------ 333
+ ++ KA ++ EA + E+M C D + S+LI L KA
Sbjct: 409 STIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIG 468
Query: 334 -------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
+ Y+ +I + C A + ++ C PD T+ + C +R+ D
Sbjct: 469 MDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRIND 528
Query: 387 GMLVLNLMREMLSKGIVPQESTHKML 412
L+ + MR + G++P T+ ++
Sbjct: 529 AFLLFDRMR---AAGVMPDVVTYSIV 551
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 62/317 (19%), Positives = 111/317 (35%), Gaps = 81/317 (25%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +++ L KSK+ ++L ++ LS+G D S+++ +L K
Sbjct: 1231 TYNTVIDGLCKSKRVDRAYKLFLQM--LSDGLAP-----------DDVTYSIVISSLCKW 1277
Query: 192 NSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A V L K+ + + LI G+CKT D A + ++ + G PD V++
Sbjct: 1278 RFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTF 1337
Query: 251 TCFIEHYCREKDFRKV---------------------------DYTLKE--------MQE 275
+ FI+ + R+ D +L E M++
Sbjct: 1338 SIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQ 1397
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL-----------------TDTS 318
GC+P T T ++ L K + L K D D
Sbjct: 1398 CGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVR 1457
Query: 319 FYSSLIFILSKAV---------------RFLIYNTMISSACVRSEEGNALKLRQKIEEDS 363
+++ + K ++++ M+ +E A L + + +
Sbjct: 1458 LGCAIVDMFGKCGSPQDARKVFEGMDQRNVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEG 1517
Query: 364 CKPDCETHARSLKMCCH 380
+PD T L MCCH
Sbjct: 1518 VEPDAVTFLSLLTMCCH 1534
>gi|356531098|ref|XP_003534115.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Glycine max]
Length = 466
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 139/326 (42%), Gaps = 49/326 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALG----KSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
FTWA Q Y H P YN M++ L K K+F ++ ++++ + + V + +
Sbjct: 44 FTWAGHQEDYSHEPCAYNDMMDILSSTRYKVKQFRIVCDVLEYMKRNNRTMVPAEVLLVI 103
Query: 173 MRR-----------------------LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209
+R+ L+ A ++L+D L K V A ++ K + +
Sbjct: 104 LRKYTEKYLTHMQKFAKKKRIRVKTQLEINAFNLLLDALCKCCLVEDAESLYKKMRKTVK 163
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+++ +++L+ GWC+ R K ++EM + G PD +Y I+ YC+ +
Sbjct: 164 PNAETYNILVFGWCRVRNPTRGMKLLEEMIELGHRPDNFTYNTAIDTYCKTGMITEAVDL 223
Query: 270 LKEMQEKG---CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
+ M+ KG P+ T I++ AL + ++ + K+ M S CL D + Y +
Sbjct: 224 FEFMRTKGSTISSPTAKTYAIIIVALAQHDRMEDCFKLIGHMISSGCLPDVTTYKEI--- 280
Query: 327 LSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
I C+ + A K +++ S +PD T+ LK+ C K+ +D
Sbjct: 281 -------------IEGMCMCGKIDEAYKFLEEMGNKSYRPDIVTYNCFLKVLCDNKKSED 327
Query: 387 GMLVLNLMREMLSKGIVPQESTHKML 412
L L M+ +P T+ ML
Sbjct: 328 A---LKLYGRMIELNCIPSVQTYNML 350
>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 149/349 (42%), Gaps = 50/349 (14%)
Query: 108 VVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLA 167
V EALK F + + GY TYN +++ L K + V E EL +G V
Sbjct: 274 VSEALKLF---GSVLRQGYEPEVPTYNILIDGLLKEDR-------VNEAFELFSGLVKHG 323
Query: 168 AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKT 225
D +V +D L K V A + + K C+ + +I+G CK
Sbjct: 324 LEP------DAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVP-DVVSHNAVINGLCKE 376
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
++ D A+ + M G SP+ +S+ I CR ++K T KEM ++G KP+V+T
Sbjct: 377 KRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTY 436
Query: 286 TIVMHALEKAKQ---IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--------- 333
I++ L KA+Q I EA+ +++ M + D YS+LI L KA +
Sbjct: 437 NILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGA 496
Query: 334 ----------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
YN++IS C + AL+L + E C PD T+ + C K+
Sbjct: 497 MEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALC-KQE 555
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
M D L L L G+VP + L + L A R+DE L
Sbjct: 556 MVDKALA--LFDGSLEAGVVPTSGMYFSLIDGL------CAVARVDEAL 596
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 97/442 (21%), Positives = 175/442 (39%), Gaps = 65/442 (14%)
Query: 31 NRHCITNELTGLPSWLKFFDTQ-----------SPDEDFVIPSLASWVESLKLNEQSRIS 79
NR L+GL + + D Q SPD L + + KL+E +I
Sbjct: 84 NRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIF 143
Query: 80 SHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPE--TYNAMV 137
A+ DV + ++ + DK+ EA + +++ P+ TYN++V
Sbjct: 144 DGAVKRGFVPDVVTYNALING-FCKADKLDEAQRILQRMVSESLV-----PDVVTYNSLV 197
Query: 138 EALGKSKKFG--------------------LMWELVKEIDELSNGYVSLAAMSTVMRRLD 177
L K+ + L+ L +E+ L + L M + D
Sbjct: 198 NGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPD 257
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
+ + L+ L + V+ A K+F + +++LI G K + + A +
Sbjct: 258 IVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFS 317
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
+ +HG PD ++YT FI+ C+ LK+M EKGC P V++ V++ L K K
Sbjct: 318 GLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEK 377
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIF-----------------ILSKAVR--FLIYN 337
++ EA + M++ C + +++LI +L + V+ + YN
Sbjct: 378 RVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYN 437
Query: 338 TMISSACVRSEEGN---ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
++ C +EG A+ L + E PD T++ + ++ D +L M
Sbjct: 438 ILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAM 497
Query: 395 REMLSKGIVPQESTHKMLAEEL 416
+KG +P T+ L L
Sbjct: 498 E---AKGCIPNVYTYNSLISGL 516
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 112/263 (42%), Gaps = 28/263 (10%)
Query: 177 DTRAMSVLMDTLVKRNSV--AHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D + +L+ +L+K + AH + L K +S+ F++ I G C+ + AQ
Sbjct: 15 DAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDIST--FNIYISGLCRASRIGDAQTV 72
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
M +HGF P+ ++Y + C + M + G P V+T ++H K
Sbjct: 73 FDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCK 132
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
++ EALK+++ + D + YN +I+ C + A +
Sbjct: 133 VGKLDEALKIFDGAVKRGFVPDV----------------VTYNALINGFCKADKLDEAQR 176
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ Q++ +S PD T+ + C R+ + +++ + KG P T+ L
Sbjct: 177 ILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLI------VDKGFSPNVITYSTLIS 230
Query: 415 EL--EKKSLGNAKERIDELLTHA 435
L E + L +A++ +++++ +
Sbjct: 231 GLCRELRRLESARQLLEKMVLNG 253
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 82/204 (40%), Gaps = 21/204 (10%)
Query: 113 KCFCFTWAKTQT--------GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV 164
+C W K T G T TYN +V+ L K+++ G + E + D
Sbjct: 408 QCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFD------- 460
Query: 165 SLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGW 222
AM R D S L+D L K + A ++ ++ K CI + ++ LI G
Sbjct: 461 ---AMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIP-NVYTYNSLISGL 516
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
C K D A + M + G PD ++Y I C+++ K E G P+
Sbjct: 517 CGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTS 576
Query: 283 ITCTIVMHALEKAKQIYEALKVYE 306
++ L ++ EALK+ +
Sbjct: 577 GMYFSLIDGLCAVARVDEALKLLQ 600
>gi|356560073|ref|XP_003548320.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Glycine max]
Length = 466
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 138/326 (42%), Gaps = 49/326 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALG----KSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
FTWA Q Y H P YN M++ L K K+F ++ ++++ + + V + + +
Sbjct: 44 FTWAGHQEDYSHEPCAYNDMMDILSSTRYKVKQFRIVCDVLEYMKRNNKTTVPVEVLLVI 103
Query: 173 MRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209
+R+ + A ++L+D L K V A ++ K + +
Sbjct: 104 LRKYTEKYLTHVQKFARKRRIRVKTQPEINAFNLLLDALCKCCLVEDAETLYKKMRKTVK 163
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+++ +++ + GWC+ R K ++EM + G PD +Y I+ YC+ +
Sbjct: 164 PNAETYNIFVFGWCRVRNPTRGMKLLEEMVELGHRPDNFAYNTAIDTYCKAGMVTEAVDL 223
Query: 270 LKEMQEKG---CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
+ M+ KG P+ T I++ AL + ++ E K+ M S CL D + Y +
Sbjct: 224 FEFMRTKGSSISSPTAKTYAIIIVALAQHDRMEECFKLIGHMISSGCLPDVTTYKEI--- 280
Query: 327 LSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
I CV + A K +++ S +PD T+ LK+ C K+ +D
Sbjct: 281 -------------IEGMCVCGKIDEAYKFLEEMGNKSYRPDIVTYNCFLKVLCDNKKSED 327
Query: 387 GMLVLNLMREMLSKGIVPQESTHKML 412
L L M+ +P T+ ML
Sbjct: 328 A---LKLYGRMIELNCIPSVQTYNML 350
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
+I G C K D A K ++EM + PD V+Y CF++ C K M E
Sbjct: 280 IIEGMCVCGKIDEAYKFLEEMGNKSYRPDIVTYNCFLKVLCDNKKSEDALKLYGRMIELN 339
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
C PSV T +++ + A + +++M + C D YS +I
Sbjct: 340 CIPSVQTYNMLISMFFEIDDPDGAFETWQEMDNRGCRPDIDTYSVMI 386
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 140/300 (46%), Gaps = 37/300 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G T TYN++V L K L+ V L M + + + + L
Sbjct: 333 GLKPTVVTYNSLVNGLCNEGK-------------LNEAKVLLDEMLSSNLKPNVITYNAL 379
Query: 185 MDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
++ K+ + A ++F K ++ + F+ L+HG+CK K + A K M + GF
Sbjct: 380 INGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGF 439
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
P+ +Y C I +CRE +V L EMQ +G K +T I++ A + K+ +A +
Sbjct: 440 LPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAAR 499
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEE 361
+ ++M L K ++ L YN +++ C+ AL LR+++E+
Sbjct: 500 LIDEM------------------LDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEK 541
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ + T+ ++ C K +++D +LN EML KG++P +T++++ EE+ +K
Sbjct: 542 EGRWANVVTYNVLIQGYCRKGKLEDANGLLN---EMLEKGLIPNRTTYEIIKEEMMEKGF 598
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 117/263 (44%), Gaps = 30/263 (11%)
Query: 175 RLDTRAMSVLMDTLVKRN---SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYA 231
+L + + L+ LVK N V YK ++ K IS + F+ +I+G CK K + A
Sbjct: 192 KLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRK--ISPNLITFNTVINGLCKVGKLNKA 249
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYC---REKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+ +M GF P+ V+Y I+ YC R K D LKEM E P+ +T ++
Sbjct: 250 GDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVL 309
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF-----------------ILSKAV 331
+ K + + ALKV+E+M+S Y+SL+ +LS +
Sbjct: 310 IDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNL 369
Query: 332 R--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ + YN +I+ C + A +L I + P+ T L C +M++ L
Sbjct: 370 KPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFL 429
Query: 390 VLNLMREMLSKGIVPQESTHKML 412
L + ML KG +P ST+ L
Sbjct: 430 ---LQKVMLEKGFLPNASTYNCL 449
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 107/256 (41%), Gaps = 24/256 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCI----SLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
+ L+D K V YK K+ + S +S F+VLI G+CK A K +E
Sbjct: 269 NTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEE 328
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M G P V+Y + C E + L EM KP+VIT +++ K K
Sbjct: 329 MQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKL 388
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
+ EA ++++ + + + +NT++ C + A L++
Sbjct: 389 LEEARELFDNIGKQGLTPNV----------------ITFNTLLHGYCKFGKMEEAFLLQK 432
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE-L 416
+ E P+ T+ + C + +M++ V NL+ EM +G+ T+ +L
Sbjct: 433 VMLEKGFLPNASTYNCLIVGFCREGKMEE---VKNLLNEMQCRGVKADTVTYNILISAWC 489
Query: 417 EKKSLGNAKERIDELL 432
EKK A IDE+L
Sbjct: 490 EKKEPKKAARLIDEML 505
>gi|242071011|ref|XP_002450782.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor]
gi|241936625|gb|EES09770.1| hypothetical protein SORBIDRAFT_05g018050 [Sorghum bicolor]
Length = 528
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 139/316 (43%), Gaps = 60/316 (18%)
Query: 120 AKTQTGYMHT---PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
A+ +++T P+ Y+A+V+AL ++++F W +V +D ++G S + + + RR
Sbjct: 107 ARLHPSFVNTRPPPDAYDAVVDALARARQFDAAWRVV--VDASADGAASPRSFAVLARRY 164
Query: 177 DTRAM------------------------SVLMDTLVKRNSVAHAYKVFLKFKDCISLSS 212
M + L+DTL K A ++F K K + +
Sbjct: 165 VAAGMTRQAVRAFDDMEAFVGREANSAEFATLLDTLCKYKYPKVATEIFNKRKYKYNPNE 224
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----EKDFR---- 264
+++ +LI+GWCK ++D A+K +K+M HG P+ V+Y + CR D+R
Sbjct: 225 KMYTILIYGWCKVNRNDMARKFLKDMLDHGIEPNIVTYNILLNGICRHASLHPDYRFDRT 284
Query: 265 --KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
+ LKEM+++G +P V + +I++H +A + + ++ MK + Y+S
Sbjct: 285 VHSAEDVLKEMRDRGIEPDVTSYSIILHVYSRAHKPELCVCMFRSMKDRGICPTVATYTS 344
Query: 323 LIFILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDS 363
+I L+ R YN R++ AL+L K+++
Sbjct: 345 VIKCLASCGRLEDAETLLDEMVAEGVCPSPATYNCFFKEYRGRNDVSGALQLYNKMKQPG 404
Query: 364 --CKPDCETHARSLKM 377
PD T+ L M
Sbjct: 405 SLTAPDIHTYNILLGM 420
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 191 RNSVAHAYKVFLKFKDCISLSS---QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
RN V+ A +++ K K SL++ +++L+ + K + + +M + PD
Sbjct: 387 RNDVSGALQLYNKMKQPGSLTAPDIHTYNILLGMFIKLNRHGSVKDIWSDMCESTVGPDL 446
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
SYT I +C + +R+ EM EKG P IT + L +A + L+ + +
Sbjct: 447 DSYTLLIHGFCASQKWREACQFFMEMIEKGFLPQKITFETLYRGLIQA----DMLRTWRR 502
Query: 308 MK 309
+K
Sbjct: 503 LK 504
>gi|115480461|ref|NP_001063824.1| Os09g0542800 [Oryza sativa Japonica Group]
gi|32526676|dbj|BAC79199.1| chloroplast RNA processing 1 -like protein [Oryza sativa Japonica
Group]
gi|113632057|dbj|BAF25738.1| Os09g0542800 [Oryza sativa Japonica Group]
gi|125606498|gb|EAZ45534.1| hypothetical protein OsJ_30195 [Oryza sativa Japonica Group]
gi|215768653|dbj|BAH00882.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 543
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 145/329 (44%), Gaps = 47/329 (14%)
Query: 130 PETYNAMVEALGKSKKFGLMWELVKEIDELS---NGYVSLAAM------------STVMR 174
P Y AM++ L K F L L+ E+ E S + + LA + S + R
Sbjct: 144 PALYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQLILALIRRYVRAEMPSEASDLFR 203
Query: 175 RL--------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR 226
R+ D ++ L+ L K+ + A +F +K + ++ L+H WC++
Sbjct: 204 RMEEYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKSVFTPDVVLYTTLVHAWCRSG 263
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
+ + A++ EM Q G +P+ +YT I+ R + L +M + GC P+ T
Sbjct: 264 RLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFN 323
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI--------LSKAVRFL---- 334
+M A KA + + L+V+ +M+ C D Y+ L+ L A++ L
Sbjct: 324 AIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRMI 383
Query: 335 ---------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
+N M+ V A KL ++++E CKP+ T+ +++ +K M
Sbjct: 384 AKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMD 443
Query: 386 DGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+VL + ++M ++G+ P +T+ L E
Sbjct: 444 ---MVLRIKKDMDAQGVEPNVNTYAALIE 469
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 121/282 (42%), Gaps = 30/282 (10%)
Query: 53 SPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEAL 112
+PD + +W S +LNE R+ + +V + ++ Y + +V A
Sbjct: 246 TPDVVLYTTLVHAWCRSGRLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRA-GQVPRAQ 304
Query: 113 KCFCFTWAKTQTGYMHTPETYNAMVEA---LGKSKKF----GLMWELVKEIDELS----- 160
+ C +G T+NA++ A G+S++ M +L E D ++
Sbjct: 305 ELLC---QMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLM 361
Query: 161 -----NGYVSL-AAMSTVMRRL------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208
G +L AAM + R + D + ++ ++ +V A K++ + ++
Sbjct: 362 ETHCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQ 421
Query: 209 SLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ + +++L+ + + D + K+M G P+ +Y IE +C ++++
Sbjct: 422 CKPNVVTYNLLMRLFNLEKSMDMVLRIKKDMDAQGVEPNVNTYAALIEAFCGRGNWKRAH 481
Query: 268 YTLKEM-QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
TL+EM +EK KP+ +V+ L KA Q+ ++ E M
Sbjct: 482 MTLREMVEEKALKPTKPVYDMVLALLRKAGQLRRHEELVEMM 523
>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
Length = 707
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 147/322 (45%), Gaps = 40/322 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K + LV E +S+G+V D S+L D L KR
Sbjct: 82 TYNTLISGLCKQQNVDRAKTLVDEF--VSSGFVP-----------DVVTYSILADGLCKR 128
Query: 192 NSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A+++ + + + ++ LI G CK K++ A + ++ + GF PD V+Y
Sbjct: 129 GRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTY 188
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T ++ C+E K ++ M ++GC PSVIT T +M L + ++ EA ++++M S
Sbjct: 189 TIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVS 248
Query: 311 DDCLTDTSFYSSLIFILSKAVR----------------FLIYNTMISSACVRSEEGNALK 354
DC D Y SL+ K+ R +YN ++ C +EG +
Sbjct: 249 KDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYC---KEGRLDE 305
Query: 355 LRQKIEEDSCK---PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
+ E+ +C+ P+ +T+ + C ++ + + M S G VP ++ +
Sbjct: 306 IPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEA---FPFLESMHSAGCVPDVVSYNI 362
Query: 412 LAEELEKKS-LGNAKERIDELL 432
+ + L K S A++ +D+++
Sbjct: 363 IIDGLFKASKPKEARQVLDQMI 384
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 98/235 (41%), Gaps = 28/235 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++LI G CK K+D A + + EM G +PD V++ ++ C+ F + L M
Sbjct: 13 YNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMA 72
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
E+ C+PS T ++ L K + + A + ++ S + D YS L L K R
Sbjct: 73 ERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRID 132
Query: 333 -----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ YNT+I C S+ A +L + + PD T+ +
Sbjct: 133 EAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIV 192
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDE 430
C + R+ L ++ ML +G P T+ L E L + R+DE
Sbjct: 193 DGLCKEGRLDKA---LKMVEGMLKRGCTPSVITYTALMEGLCRTG------RVDE 238
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 17/213 (7%)
Query: 121 KTQTGYMHTP--ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT 178
K G TP + YNA+++ K + +DE+ N + +A V +
Sbjct: 276 KVVDGIRGTPYIDVYNALMDGYCKEGR----------LDEIPNVFEDMACRGCVP---NI 322
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKE 237
+ +++MD L K V A+ + + ++++I G K K A++ + +
Sbjct: 323 KTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQ 382
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M Q G PD V+Y + +C+E+ F LK M + G P +T ++ L + +
Sbjct: 383 MIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNR 442
Query: 298 IYEALKVYEKMKSDDCLTDT-SFYSSLIFILSK 329
+ +A ++ +M + C+ + Y+++I L K
Sbjct: 443 LGDAYELMHEMLRNGCVVSACTTYNTIIDRLCK 475
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 111/243 (45%), Gaps = 34/243 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMS--TVMRRLDTRA----MSVLM 185
TYN ++ L ++ + G +EL+ E+ L NG V A + T++ RL +LM
Sbjct: 429 TYNTLISGLSQTNRLGDAYELMHEM--LRNGCVVSACTTYNTIIDRLCKEGCLKQALLLM 486
Query: 186 DTL----VKRNSVAHAYKVFL-------KFKDCISLSSQI--------FDVLIHGWCKTR 226
D + V+ N+V Y +F+ + + SL S++ + +I G CK
Sbjct: 487 DHMTGHGVEANTVT--YNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAE 544
Query: 227 KSDYAQKAMKEMFQ-HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
+ D A K +EM G ++ I+ + + K + L+ M ++GC PSVIT
Sbjct: 545 QLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITY 604
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTMIS 341
+V+ L K ++ +A +++++M + + Y+ LI+ L R + M S
Sbjct: 605 NMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMAS 664
Query: 342 SAC 344
S C
Sbjct: 665 SDC 667
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 20/198 (10%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
T G TYN ++ L K + L+ E+D L D +
Sbjct: 490 TGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR----------------DEVSY 533
Query: 182 SVLMDTLVKRNSVAHAYKV---FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
+ ++ L K + A K+ + K + ++S F++LI + KT++ D A ++ M
Sbjct: 534 TTVIIGLCKAEQLDRASKLAREMVAVKG-LCITSHTFNLLIDAFTKTKRLDEALTLLELM 592
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
Q G SP ++Y I C+ K EM +G S ++ T++++ L +
Sbjct: 593 VQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRG 652
Query: 299 YEALKVYEKMKSDDCLTD 316
EAL+V E+M S DC D
Sbjct: 653 KEALQVLEEMASSDCEID 670
>gi|224089100|ref|XP_002308636.1| predicted protein [Populus trichocarpa]
gi|222854612|gb|EEE92159.1| predicted protein [Populus trichocarpa]
Length = 607
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 99/411 (24%), Positives = 165/411 (40%), Gaps = 87/411 (21%)
Query: 116 CFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMW-ELVKEIDELSNG-YVSLAAMSTVM 173
F WA+ + G+ + +N+MV LGK+++FG W L+ I G VS + ++
Sbjct: 133 VFLWAEKKPGFQSSAALFNSMVNFLGKAREFGSAWCLLLDRIGGNEGGDLVSSDTFAILI 192
Query: 174 RRLDTRAMS---------------------------VLMDTLVKRNSVAHAYKVF---LK 203
RR MS +L+D+L K V A F ++
Sbjct: 193 RRYTRAGMSEAAIRTFEYASSLDLIHNSEAGTSLFEILLDSLCKEGHVRVATDYFDRKVE 252
Query: 204 FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263
C S +I+++L++GW ++RK +A++ EM + P V+Y +E Y R +
Sbjct: 253 KDPCWVPSVRIYNILLNGWFRSRKLKHAERLWLEMKKKNVKPSVVTYGTLVEGYSRMRRV 312
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+ + EM+ +G K + I ++ AL +A + E L + E + S Y+SL
Sbjct: 313 ERAIELVDEMKREGIKSNAIVYNPIIDALAEAGRFKEVLGMMEHFFLCEEGPTISTYNSL 372
Query: 324 IFILSKAVRFL----IYNTMIS-----------------SACVRSEEGNALKLRQKIEED 362
+ KA + I MIS S C + EEG + L K+ E
Sbjct: 373 VKGYCKAGDLVGASKILKMMISREVFPTPTTYNYFFRHFSKCRKIEEG--MNLYTKMIES 430
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR--------------------------- 395
PD T+ LKM C ++R+ + + MR
Sbjct: 431 GYTPDRLTYHLLLKMLCEEERLDLAVQISKEMRARGCDMDLATSTMFTHLLCKMQRFEEA 490
Query: 396 -----EMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQRTF 441
+ML +GIVPQ T L +E K+ L R+ +L++ + +
Sbjct: 491 FAEFEDMLRRGIVPQYLTFHRLNDEFRKQGLTELARRLCKLMSSVSHSKNL 541
>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 145/342 (42%), Gaps = 55/342 (16%)
Query: 104 SPDKVVEALKCFC---------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVK 154
S D V++ L+ FC F WA + G+ H TYN+M+ L K+++F + +++
Sbjct: 94 SHDLVIDVLERFCHARKPAFRFFCWAGEKQGFEHDSRTYNSMMSILAKTRQFETVVSMLE 153
Query: 155 EIDELSNGYVSLAAMSTVMR-----------------------RLDTRAMSVLMDTLVKR 191
E+ G +++ S MR ++ ++ L+D+L +
Sbjct: 154 EMG--GKGVLTMDTFSIAMRAFAAAKERKKAVAMFELMKKYNYKVGVETINHLLDSLGRA 211
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
A +F K + + + + VL++GWCK + A EM GF PD V++
Sbjct: 212 KLGKEAQALFENLKGRFTPNLRTYTVLLNGWCKVKNLMEAGSVWNEMIDKGFKPDIVAHN 271
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+E R K M+ KG P V + TI++ L + ++ EA++ +++M
Sbjct: 272 IMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDS 331
Query: 312 DCLTDTSFYSSLIFILSKAVRF-LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
C D + Y+ LI R ++Y+ L ++++E+ C PD T
Sbjct: 332 GCKPDAAVYTCLITGFGNRKRMDMVYD-----------------LLKEMKEEGCPPDGLT 374
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ +K+ K D + ++M GI P T+ M+
Sbjct: 375 YNALIKLMTRLKMPDD---AARIYKKMTQSGIEPTIHTYNMI 413
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D R+ ++L+ L +++ + A + F + D + ++ LI G+ ++ D +
Sbjct: 301 DVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLL 360
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KEM + G PDG++Y I+ R K K+M + G +P++ T ++M + +
Sbjct: 361 KEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQT 420
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ V+++M D + Y+ LI
Sbjct: 421 RNYEMGRAVWDEMSRKGFCPDDNSYTVLI 449
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 85/215 (39%), Gaps = 36/215 (16%)
Query: 83 LSEDHETDVDKVSEILRKRYPSPD---------------KVVEALKCFCFTWAKTQTGYM 127
L +D K+ +++ + PSPD K+ EA++ F +G
Sbjct: 278 LRSKQRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYF---QEMIDSGCK 334
Query: 128 HTPETYNAMVEALGKSKKFGLMWELVKEIDELS---NGYVSLAAMSTVMRRLDTRAMSVL 184
Y ++ G K+ ++++L+KE+ E +G L A+ L
Sbjct: 335 PDAAVYTCLITGFGNRKRMDMVYDLLKEMKEEGCPPDG-------------LTYNALIKL 381
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
M L + A YK + I + +++++ + +TR + + EM + GF
Sbjct: 382 MTRLKMPDDAARIYKKMTQ--SGIEPTIHTYNMIMKSYFQTRNYEMGRAVWDEMSRKGFC 439
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
PD SYT I + + L+EM EKG K
Sbjct: 440 PDDNSYTVLIGGLISQGRSGEACKYLEEMLEKGMK 474
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 119/256 (46%), Gaps = 21/256 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L+D L K + A ++ + K + L+ I++ +++G CK + A K MKEM
Sbjct: 472 GALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEV 531
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD ++YT I+ YCR D K L+EM ++G +P+V+T ++M+ + +
Sbjct: 532 AGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLED 591
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
++ M + D + YNT++ C+R+ K+ +++
Sbjct: 592 GDRLLGWMLEKGIVPDA----------------ITYNTLMKQHCIRNSMNTTTKIYKRMR 635
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKK 419
PD T+ +K C + +K+ L +EM+ KG VP +++ L + +KK
Sbjct: 636 NQGVAPDSNTYNILIKGHCKARNLKEAWF---LYKEMIEKGYVPTVTSYNALIKRFYKKK 692
Query: 420 SLGNAKERIDELLTHA 435
+ A+E +E+ H
Sbjct: 693 KILEARELFEEMRGHG 708
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 138/314 (43%), Gaps = 40/314 (12%)
Query: 146 FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL------VKRNS--VAHA 197
F + ++++ EI LS ++ +L + + V +D+ + NS + A
Sbjct: 193 FDIFFQVLVEIGHLSEA-------RKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMA 245
Query: 198 YKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY 257
KVF ++ IS ++ ++++I+ C+ K A + + +M +PD VSY+ I+ Y
Sbjct: 246 IKVFCEYG--ISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGY 303
Query: 258 CREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDT 317
C + +K + +MQ KG KP+ T ++ L K + +EA KV +M S + D
Sbjct: 304 CHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDN 363
Query: 318 SFYSSLIF-----------------ILSKAVR--FLIYNTMISSACVRSEEGNALKLRQK 358
Y++LI +LSK + ++ Y T+I + L +
Sbjct: 364 VVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHE 423
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
+ KPD T+ + + C M + +L EM+ G+ P T+ L + L K
Sbjct: 424 MISRGLKPDEVTYTTLIDVYCKAGEMVNA---FSLHNEMVQMGMTPNIVTYGALIDGLCK 480
Query: 419 KS-LGNAKERIDEL 431
L A E +DE+
Sbjct: 481 HGELDTANELLDEM 494
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 19/198 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G+ + K Q EM G PD V+YT I+ YC+ + EM
Sbjct: 401 YTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMV 460
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ G P+++T ++ L K ++ A ++ ++M+ +
Sbjct: 461 QMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGL----------------QLNVC 504
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
IYN+M++ C A+KL +++E PD T+ + C R+ D L+
Sbjct: 505 IYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYC---RLGDIDKAHKLL 561
Query: 395 REMLSKGIVPQESTHKML 412
+EML +G+ P T +L
Sbjct: 562 QEMLDRGLQPTVVTFNVL 579
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 90/215 (41%), Gaps = 23/215 (10%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEID------------ELSNGYVSLAAMSTVMRRLDTRA 180
YN+MV + K+ +L+KE++ + + Y L + + L
Sbjct: 506 YNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEML 565
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDC-----------ISLSSQIFDVLIHGWCKTRKSD 229
L T+V N + + + + +D I + ++ L+ C +
Sbjct: 566 DRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMN 625
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
K K M G +PD +Y I+ +C+ ++ ++ + KEM EKG P+V + ++
Sbjct: 626 TTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALI 685
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
K K+I EA +++E+M+ + D Y+ +
Sbjct: 686 KRFYKKKKILEARELFEEMRGHGLVADGEIYNFFV 720
>gi|449466251|ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g02420-like [Cucumis sativus]
Length = 495
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/351 (21%), Positives = 147/351 (41%), Gaps = 50/351 (14%)
Query: 91 VDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMW 150
+D V + +R + +P ++AL+ F +T + G+ HT + + M+ LG+S+KF +W
Sbjct: 74 IDGVLKRVRFSHGNP---LQALEFFNYT--AKRRGFYHTSFSVDTMLYILGRSRKFDKIW 128
Query: 151 ELVKEIDELSNGYVSLAAMSTVMRRL-----------------------DTRAMSVLMDT 187
+++ ++ +SL + V+ R+ D + L+ T
Sbjct: 129 DVLLDVKFKDPSLISLRTVMVVLGRIAKVCSVRQTVESFRKFKKFVPEFDVTCFNALLRT 188
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
L + S+ A V+ K + Q F++L+ GW + S+ A+ EM + G PD
Sbjct: 189 LCQEKSMMDARNVYHGLKSMFRPNLQTFNILLSGW---KSSEEAEGFFDEMIEMGVKPDV 245
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
VSY C ++ YC+ ++ K + +M+++ VIT T ++ L Q +A + ++
Sbjct: 246 VSYNCLVDVYCKNREMDKAFKVVGKMRDEDIPADVITYTSIIGGLGLVGQPDKARNILKE 305
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
MK C D + YN I + C+ A L ++ P+
Sbjct: 306 MKEYGCYPDVA----------------AYNATIRNFCIAKRLHEAFDLLDEMVNKGLSPN 349
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
T+ ++ ++ NL R M+ G +P + L +K
Sbjct: 350 ATTYNLFFRIFFWSNDLQSAW---NLYRRMMDTGCLPNTQSCLFLVRLFKK 397
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 42/94 (44%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ I +C ++ A + EM G SP+ +Y F + D + + M
Sbjct: 318 YNATIRNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNLFFRIFFWSNDLQSAWNLYRRMM 377
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+ GC P+ +C ++ +K ++ AL+++ M
Sbjct: 378 DTGCLPNTQSCLFLVRLFKKYEKEEMALELWNDM 411
>gi|356499253|ref|XP_003518456.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like [Glycine max]
Length = 510
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 149/354 (42%), Gaps = 57/354 (16%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F +AKT + ++ +++ + K ++F + W+L+ E+D+ + + + T++RRL
Sbjct: 88 FHYAKTLPNPPLSHSSFTLLIDTMAKVRQFDVAWQLIVEMDQRHHLTPTPSTFLTLIRRL 147
Query: 177 --------------DTRAMS----------VLMDTLVKRNSVAHAYKVFLKFKDCISLSS 212
D A S VL+DTL K V A +VF K K +
Sbjct: 148 ICAGLTRQAVRAFHDIDAFSETKTTPQDFCVLLDTLCKYGHVRLAVEVFNKNKHTFPPTV 207
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----------EKD 262
+++ VLI+GWCK + AQ + EM G P+ V+Y + CR E+
Sbjct: 208 KMYTVLIYGWCKIGRIKTAQSFLNEMIDKGIEPNVVTYNVLLNGVCRKVSLHPEERFERT 267
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
R + +M+E G +P V + +I++H +A + L MK + Y+S
Sbjct: 268 IRNAEEVFDQMRESGIEPDVTSFSILLHVYSRAHKPQLVLDKLSLMKEKGICPNVVMYTS 327
Query: 323 LIFILSK------AVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDS 363
+I L+ A R L YN R + +AL++ ++++ED
Sbjct: 328 VIKCLASCGWLEDAERLLGEMVRDGVSPCAATYNCFFKEFRGRKDGESALRMFKRMKEDG 387
Query: 364 -CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C P T+ ++M +K +V + ++M G P + +L L
Sbjct: 388 LCMPSSHTYVILIRMFLRLDMIK---VVKEIWQDMKETGAGPDLDLYTVLIHGL 438
>gi|449511317|ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g02420-like [Cucumis sativus]
Length = 495
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/351 (21%), Positives = 147/351 (41%), Gaps = 50/351 (14%)
Query: 91 VDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMW 150
+D V + +R + +P ++AL+ F +T + G+ HT + + M+ LG+S+KF +W
Sbjct: 74 IDGVLKRVRFSHGNP---LQALEFFNYT--AKRRGFYHTSFSVDTMLYILGRSRKFDKIW 128
Query: 151 ELVKEIDELSNGYVSLAAMSTVMRRL-----------------------DTRAMSVLMDT 187
+++ ++ +SL + V+ R+ D + L+ T
Sbjct: 129 DVLLDVKFKDPSLISLRTVMVVLGRIAKVCSVRQTVESFRKFKKFVPEFDVTCFNALLRT 188
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
L + S+ A V+ K + Q F++L+ GW + S+ A+ EM + G PD
Sbjct: 189 LCQEKSMMDARNVYHGLKSMFRPNLQTFNILLSGW---KSSEEAEGFFDEMIEMGVKPDV 245
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
VSY C ++ YC+ ++ K + +M+++ VIT T ++ L Q +A + ++
Sbjct: 246 VSYNCLVDVYCKNREMDKAFKVVGKMRDEDIPADVITYTSIIGGLGLVGQPDKARNILKE 305
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
MK C D + YN I + C+ A L ++ P+
Sbjct: 306 MKEYGCYPDVA----------------AYNATIRNFCIAKRLHEAFDLLDEMVNKGLSPN 349
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
T+ ++ ++ NL R M+ G +P + L +K
Sbjct: 350 ATTYNLFFRIFFWSNDLQSAW---NLYRRMMDTGCLPNTQSCLFLVRLFKK 397
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 42/94 (44%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ I +C ++ A + EM G SP+ +Y F + D + + M
Sbjct: 318 YNATIRNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNLFFRIFFWSNDLQSAWNLYRRMM 377
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+ GC P+ +C ++ +K ++ AL+++ M
Sbjct: 378 DTGCLPNTQSCLFLVRLFKKYEKEEMALELWNDM 411
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 139/309 (44%), Gaps = 30/309 (9%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F W + G+ H +Y++M+ L +++ G+ ++ + + + + V R++
Sbjct: 88 FNWIALRPGFKHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCCSIEDVLFVLEVFRKM 147
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS-----LSSQI------FDVLIHGWCKT 225
+ TL N++ + FL + + L++QI F+ +++G+CK
Sbjct: 148 NADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKI 207
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
A+ ++ Q G PD +YT I +CR K M +KGC+ + ++
Sbjct: 208 GNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSY 267
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
T ++H L +A +I EALK++ M D+C Y+ LI+ LS + R
Sbjct: 268 TNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGR------------- 314
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ AL L +++E C+P+ T+ + C + +M + ++ EM KG++P
Sbjct: 315 ---KVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEAR---KMLSEMSEKGLIPS 368
Query: 406 ESTHKMLAE 414
T+ L +
Sbjct: 369 VVTYNALID 377
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 116/297 (39%), Gaps = 60/297 (20%)
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
R +VL+ L A +F +K K C + + VLI G CK K D A+K +
Sbjct: 299 VRTYTVLIYALSGSGRKVEALNLFNEMKEKGC-EPNVHTYTVLIDGLCKENKMDEARKML 357
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCRE----------------------------------- 260
EM + G P V+Y I+ YC+E
Sbjct: 358 SEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKK 417
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
+ K L +M E+ PS+IT ++H K + A ++ M + + D Y
Sbjct: 418 RKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTY 477
Query: 321 SSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEE 361
S I L K R +IY +I C + A L +++
Sbjct: 478 SVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLN 537
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
D+C P+ T+ ++ C +K+MK+ +L+ +ML+ G+ P T+ +L E+ K
Sbjct: 538 DACLPNSYTYNVLIEGLCKEKKMKEAS---SLVAKMLTMGVKPTVVTYTILIGEMLK 591
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 1/171 (0%)
Query: 155 EIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQ 213
++++L + Y L+ M+ D SV +DTL K V A +F K + +
Sbjct: 451 KVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEV 510
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I+ LI G+CK K D A ++ M P+ +Y IE C+EK ++ + +M
Sbjct: 511 IYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKM 570
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G KP+V+T TI++ + K ALKV+ M S D Y++ +
Sbjct: 571 LTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFL 621
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 159/398 (39%), Gaps = 53/398 (13%)
Query: 68 ESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYM 127
E+ ++NE ++ + ++ED+ + +L + VEAL F K +
Sbjct: 276 EAGRINEALKLFAD-MTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNV 334
Query: 128 HTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMSTVMRR 175
HT Y +++ L K K +++ E+ E L +GY +
Sbjct: 335 HT---YTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEI 391
Query: 176 LD----------TRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCK 224
LD TR + L+ L K+ V A + K + +S S ++ LIHG CK
Sbjct: 392 LDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCK 451
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
+ A + + M ++G PD +Y+ FI+ C+E + ++ KG K + +
Sbjct: 452 VNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVI 511
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------- 333
T ++ K +I A + E+M +D CL ++ Y+ LI L K +
Sbjct: 512 YTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKML 571
Query: 334 --------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
+ Y +I +ALK+ + +PD T+ L
Sbjct: 572 TMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFL-----HAYFS 626
Query: 386 DGML--VLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
GML V +++ +M +GI+P T+ +L + + L
Sbjct: 627 QGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGL 664
>gi|357134597|ref|XP_003568903.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15200-like [Brachypodium distachyon]
Length = 537
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/393 (23%), Positives = 161/393 (40%), Gaps = 54/393 (13%)
Query: 88 ETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFG 147
E D D V +L+K+ + + F WA Y H P TY M++ LG+ KK
Sbjct: 109 EMDEDVVLRVLQKQRSN-----WQVALLFFNWAAGLPAYAHGPRTYTEMLDILGRMKKVK 163
Query: 148 LMWELVKEIDELSNG-YVSLAAMSTVMRR-----------------------LDTRAMSV 183
LM +L EI E G V+ + ++ R +D +
Sbjct: 164 LMTQLFDEIPEERRGLVVTNRTFAVLLNRYAGAHKVQEAIEMFYKRKDYGFEVDLVGFQI 223
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ +L + V A +FL+ KD + ++++++GWC A++ ++
Sbjct: 224 LLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLPDAKRIWNQIIASKL 283
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD +Y FI + M EKG P V C ++ L K+I EAL
Sbjct: 284 KPDLFTYGTFINSLTKAGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKKIPEALD 343
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRF-LIY-------------NTMISSACVRSEE 349
++ +M C D + Y++LI K R +Y N M S +++ E
Sbjct: 344 IFREMTDRGCQADVATYNTLIKYFCKIRRTEKVYELLDDMENKGCSPNNMTYSYILKTTE 403
Query: 350 --GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
+ + L Q++E+ C+ D +T+ L + K ++G V + EM G P +
Sbjct: 404 KPKDVIHLLQRMEKSGCRLDSDTYNLILNLYVSMK-YENG--VQQVWDEMERNGSGPDQR 460
Query: 408 THKMLAEELEKKSLGNAKERIDELLTHATEQRT 440
+ ++ L +++ R+D+ L + T ++
Sbjct: 461 SFTIMVHGL------HSQGRLDQALQYYTTMKS 487
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 118/256 (46%), Gaps = 21/256 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L+D L K + A ++ + K + L+ I++ +++G CK + A K MKEM
Sbjct: 472 GALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEV 531
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD ++YT I+ YCR D K L+EM ++G +P+V+T ++M+ + +
Sbjct: 532 AGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLED 591
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
++ M + D + YNT++ C+R+ K+ +++
Sbjct: 592 GDRLLGWMLEKGIVPDA----------------ITYNTLMKQHCIRNSMNTTTKIYKRMR 635
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKK 419
PD T+ +K C + +K+ L +EM+ KG VP +++ L + +K+
Sbjct: 636 NQGVAPDSNTYNILIKGHCKARNLKEAWF---LYKEMIEKGYVPTVTSYNALIKRFYKKR 692
Query: 420 SLGNAKERIDELLTHA 435
A+E +E+ H
Sbjct: 693 KFXEARELFEEMRGHG 708
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 138/314 (43%), Gaps = 40/314 (12%)
Query: 146 FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL------VKRNS--VAHA 197
F + ++++ EI LS ++ +L + + V +D+ + NS + A
Sbjct: 193 FDIFFQVLVEIGHLSEA-------RKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMA 245
Query: 198 YKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY 257
KVF ++ IS ++ ++++I+ C+ K A + + +M +PD VSY+ I+ Y
Sbjct: 246 IKVFCEYG--ISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGY 303
Query: 258 CREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDT 317
C + +K + +MQ KG KP+ T ++ L K + +EA KV +M S + D
Sbjct: 304 CHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDN 363
Query: 318 SFYSSLIF-----------------ILSKAVR--FLIYNTMISSACVRSEEGNALKLRQK 358
Y++LI +LSK + ++ Y T+I + L +
Sbjct: 364 VVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHE 423
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
+ KPD T+ + + C M + +L EM+ G+ P T+ L + L K
Sbjct: 424 MISRGLKPDEVTYTTLIDVYCKAGEMVNA---FSLHNEMVQMGMTPNIVTYGALIDGLCK 480
Query: 419 KS-LGNAKERIDEL 431
L A E +DE+
Sbjct: 481 HGELDTANELLDEM 494
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 19/198 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G+ + K Q EM G PD V+YT I+ YC+ + EM
Sbjct: 401 YTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMV 460
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ G P+++T ++ L K ++ A ++ ++M+ +
Sbjct: 461 QMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVC---------------- 504
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
IYN+M++ C A+KL +++E PD T+ + C R+ D L+
Sbjct: 505 IYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYC---RLGDIDKAHKLL 561
Query: 395 REMLSKGIVPQESTHKML 412
+EML +G+ P T +L
Sbjct: 562 QEMLDRGLQPTVVTFNVL 579
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 89/215 (41%), Gaps = 23/215 (10%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEID------------ELSNGYVSLAAMSTVMRRLDTRA 180
YN+MV + K+ +L+KE++ + + Y L + + L
Sbjct: 506 YNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEML 565
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDC-----------ISLSSQIFDVLIHGWCKTRKSD 229
L T+V N + + + + +D I + ++ L+ C +
Sbjct: 566 DRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMN 625
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
K K M G +PD +Y I+ +C+ ++ ++ + KEM EKG P+V + ++
Sbjct: 626 TTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALI 685
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
K ++ EA +++E+M+ + D Y+ +
Sbjct: 686 KRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFV 720
>gi|225436259|ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
mitochondrial-like [Vitis vinifera]
Length = 566
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 148/342 (43%), Gaps = 45/342 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG--YVSLAAMSTVMR 174
F WA Q GY H+ Y++M+ LGK +KF W L+ E+ G V+ +S ++R
Sbjct: 134 FLWAAKQPGYAHSLRAYHSMISILGKMRKFDTAWALIDEMRGGRTGTSLVTPHTLSIMIR 193
Query: 175 R-----------------------LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211
R + L+ L + +V A ++ ++
Sbjct: 194 RYCAVHDVGKAINTFYAHKQFKFGVGIEEFQNLLSALCRYKNVQDAEQLLFCNRNVFPFD 253
Query: 212 SQIFDVLIHGWCKTRKS-DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ F+++++GWC S A++ +EM G D VSY+ I Y + + KV
Sbjct: 254 TKSFNIILNGWCNVIGSMREAERFWREMSNRGIQRDVVSYSSIISCYSKVTNLNKVLKLF 313
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
+M+E P V+HAL KA + EAL + + M+ D+ Y+SLI LS+A
Sbjct: 314 NQMKEMEIAPDRKVYNAVVHALAKASFVKEALNLMKAMEGKGIAPDSVTYNSLIKPLSRA 373
Query: 331 VRFL----IYNTMIS---SACVRSEEG---------NALKLRQKIEEDSCKPDCETHARS 374
+ +++ M+ S +R+ L +K++E C PD +T+
Sbjct: 374 RKINEAKEVFDEMLQRGLSPTIRTYHAFFRILKSGEEVFMLLEKMKETGCHPDKDTYIML 433
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ C +++ + V L EM G+ P S++ +L L
Sbjct: 434 IRRFCRWRQLDN---VFKLWSEMSENGVGPDRSSYIVLIHGL 472
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 33/173 (19%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + + ++ L K + V A + + I+ S ++ LI + RK + A++
Sbjct: 324 DRKVYNAVVHALAKASFVKEALNLMKAMEGKGIAPDSVTYNSLIKPLSRARKINEAKEVF 383
Query: 236 KEMFQHGFSP--------------------------------DGVSYTCFIEHYCREKDF 263
EM Q G SP D +Y I +CR +
Sbjct: 384 DEMLQRGLSPTIRTYHAFFRILKSGEEVFMLLEKMKETGCHPDKDTYIMLIRRFCRWRQL 443
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316
V EM E G P + +++H L ++ EA K Y +MK L +
Sbjct: 444 DNVFKLWSEMSENGVGPDRSSYIVLIHGLFLNGKLEEAYKYYIEMKEKQFLPE 496
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 139/309 (44%), Gaps = 30/309 (9%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F W + G+ H +Y++M+ L +++ G+ ++ + + + + V R++
Sbjct: 88 FNWIALRPGFKHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCCSIEDVLFVLEVFRKM 147
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS-----LSSQI------FDVLIHGWCKT 225
+ TL N++ + FL + + L++QI F+ +++G+CK
Sbjct: 148 NADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKI 207
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
A+ ++ Q G PD +YT I +CR K M +KGC+ + ++
Sbjct: 208 GNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSY 267
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
T ++H L +A +I EALK++ M D+C Y+ LI+ LS + R
Sbjct: 268 TNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGR------------- 314
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ AL L +++E C+P+ T+ + C + +M + ++ EM KG++P
Sbjct: 315 ---KVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEAR---KMLSEMSEKGLIPS 368
Query: 406 ESTHKMLAE 414
T+ L +
Sbjct: 369 VVTYNALID 377
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 1/171 (0%)
Query: 155 EIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQ 213
++++L + Y L+ M+ D SV +DTL K V A +F K + +
Sbjct: 451 KVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEV 510
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I+ LI G+CK K D A ++ M P+ +Y IE C+EK ++ + +M
Sbjct: 511 IYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKM 570
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G KP+V+T TI++ + K ALKV+ M S D Y++ +
Sbjct: 571 LTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFL 621
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 116/297 (39%), Gaps = 60/297 (20%)
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
R +VL+ L A +F +K K C + + VLI G CK K D A+K +
Sbjct: 299 VRTYTVLIYALSGSGRKVEALNLFNEMKEKGC-EPNVHTYTVLIDGLCKENKMDEARKML 357
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCRE----------------------------------- 260
EM + G P V+Y I+ YC+E
Sbjct: 358 SEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKK 417
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
+ K L +M E+ PS+IT ++H K + A ++ M + + D Y
Sbjct: 418 RKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTY 477
Query: 321 SSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEE 361
S I L K R +IY +I C + A L +++
Sbjct: 478 SVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLN 537
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
D+C P+ T+ ++ C +K+MK+ +L+ +ML+ G+ P T+ +L E+ K
Sbjct: 538 DACLPNSYTYNVLIEGLCKEKKMKEAS---SLVAKMLTMGVKPTVVTYTILIGEMLK 591
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 122/305 (40%), Gaps = 59/305 (19%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++E L K KK +KE L +++ TV+ ++L+ ++K
Sbjct: 546 TYNVLIEGLCKEKK-------MKEASSLVAKMLTMGVKPTVV------TYTILIGEMLKD 592
Query: 192 NSVAHAYKVFLKFKDCISLSSQ----IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+ HA KVF +SL Q + +H + + + +M + G PD
Sbjct: 593 GAFDHALKVF---NHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDL 649
Query: 248 VSYTCFIEHYCREK-DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE------ 300
V+YT I+ Y R R D+ LK M + GCKPS+ +I++ L ++ E
Sbjct: 650 VTYTVLIDGYARLGLTHRAFDF-LKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIG 708
Query: 301 ------------ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
ALK++EKM C D S IY +I+ C +
Sbjct: 709 IDSVSNTLEYEIALKLFEKMVEHGCTIDVS----------------IYGALIAGFCQQER 752
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
A L ++E P + + L CC + + L+ M+ G++P +
Sbjct: 753 LEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEA---VRLVDAMVENGLLPLLES 809
Query: 409 HKMLA 413
+K+L
Sbjct: 810 YKLLV 814
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 159/398 (39%), Gaps = 53/398 (13%)
Query: 68 ESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYM 127
E+ ++NE ++ + ++ED+ + +L + VEAL F K +
Sbjct: 276 EAGRINEALKLFAD-MTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNV 334
Query: 128 HTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMSTVMRR 175
HT Y +++ L K K +++ E+ E L +GY +
Sbjct: 335 HT---YTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEI 391
Query: 176 LD----------TRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCK 224
LD TR + L+ L K+ V A + K + +S S ++ LIHG CK
Sbjct: 392 LDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCK 451
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
+ A + + M ++G PD +Y+ FI+ C+E + ++ KG K + +
Sbjct: 452 VNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVI 511
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------- 333
T ++ K +I A + E+M +D CL ++ Y+ LI L K +
Sbjct: 512 YTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKML 571
Query: 334 --------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
+ Y +I +ALK+ + +PD T+ L
Sbjct: 572 TMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFL-----HAYFS 626
Query: 386 DGML--VLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
GML V +++ +M +GI+P T+ +L + + L
Sbjct: 627 QGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGL 664
>gi|449437378|ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like [Cucumis sativus]
gi|449503560|ref|XP_004162063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like [Cucumis sativus]
Length = 615
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 114/495 (23%), Positives = 198/495 (40%), Gaps = 98/495 (19%)
Query: 24 PLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHAL 83
P L N I+N + + +KF + SP++ I S+ L+++S AL
Sbjct: 58 PANPLPSNSAVISNPNSAID--VKFEASYSPNDLSTISSI--------LSDRSVRPGAAL 107
Query: 84 SEDHE-TDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGK 142
+ + T + S +L + D + L F WA ++G+ + +N ++ L K
Sbjct: 108 EDALDRTGIVPSSSLLEAVFDHFDSSPKFLHSL-FLWAAKKSGFRPSAALFNRLINVLAK 166
Query: 143 SKKFGLMWELVKEIDELSNG----YVSLAAMSTVMRRLDTRAM----------------- 181
S++F W L+ L G VS+ ++RR M
Sbjct: 167 SREFDSAWSLI--TSRLRGGEESFLVSVEVFVILIRRYARAGMVQPAIRTYEFACNLETI 224
Query: 182 ---------SVLMDTLVKRNSVAHAYKVFLKFKDCIS---LSSQIFDVLIHGWCKTRKSD 229
+L+D+L K V A + F + ++ S S + +++LI+GW ++RK
Sbjct: 225 SGTGSEGLFEILLDSLCKEGHVRVASEYFNRKREMGSSFEPSIRAYNILINGWFRSRKLK 284
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
+AQ+ EM ++ SP V+Y IE YCR + + EM+ +G +P+ I ++
Sbjct: 285 HAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAIVYNPIV 344
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILSKAVRFL--------- 334
AL +A + EAL + E+ + S Y+SL+ LS A + L
Sbjct: 345 DALGEAGRFKEALGMMERFMVLEQGPTISTYNSLVKGYCKAGDLSGASKILKMMIGRGFT 404
Query: 335 ----IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
YN + ++ L K+ E PD T+ LKM C ++R+ + V
Sbjct: 405 PTPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQV 464
Query: 391 LNLMR--------------------------------EMLSKGIVPQESTHKMLAEELEK 418
N M+ M+ +GIVPQ T L +E K
Sbjct: 465 CNEMKARGFDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEFMK 524
Query: 419 KSLGNAKERIDELLT 433
+ L ++ E+++
Sbjct: 525 RGLTKMASKLQEMMS 539
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 141/294 (47%), Gaps = 40/294 (13%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP+ TYN +++ L K G +L+ E++ SNG STV + ++D
Sbjct: 439 TPDEVTYNILIDHLCSMGKLGNALDLLNEME--SNG----CPRSTV-------TYNTIID 485
Query: 187 TLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L K+ + A +VF + IS S+ F+ LI G CK ++ D A + +++M + G P
Sbjct: 486 ALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQP 545
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
+ ++Y + HYC++ + +K L+ M G + V+T +++ L KA + ALK+
Sbjct: 546 NNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLL 605
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFL--IYNTMISSACVRSEEGNALKLRQKIEEDS 363
M+ K +R YN +I S R+ +AL L +++ E
Sbjct: 606 RGMR------------------IKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVG 647
Query: 364 CKPDCETHARSLK-MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
PD T+ + +C +K+ + + EM++KG +P+ S+ +MLAE L
Sbjct: 648 EPPDALTYKIVFRSLCRGGGPIKE---AFDFLVEMVNKGFMPEFSSFRMLAEGL 698
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 21/266 (7%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + LM ++ S+ A +V K + S + +VLI+G+CK + + A +
Sbjct: 231 DETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYI 290
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++ GF PD V+Y F+ C+ + M ++G P V T V++ L K
Sbjct: 291 QQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKN 350
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ EA + +M CL DT+ +++LI LS R EE AL L
Sbjct: 351 GELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRL--------------EE--ALDL 394
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+++ PD T + C ++ D L + L EM S G P E T+ +L +
Sbjct: 395 ARELTVKGLSPDVYTFNILINALC---KVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDH 451
Query: 416 L-EKKSLGNAKERIDELLTHATEQRT 440
L LGNA + ++E+ ++ + T
Sbjct: 452 LCSMGKLGNALDLLNEMESNGCPRST 477
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 80/377 (21%), Positives = 149/377 (39%), Gaps = 62/377 (16%)
Query: 89 TDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGL 148
+D D++ LR++ P+ + L A + + + Y +V+ LG + F L
Sbjct: 54 SDQDRLLAALREQ-SDPEAALRMLNS-----ALAREDFAPSSAVYEEIVQKLGTAGAFDL 107
Query: 149 MWELVKE------------IDELSNGYVSLA----AMSTVMRRLDTRAMSVLMDTLVKRN 192
M LV+E + Y L A+ V+ +LD V DT+V
Sbjct: 108 MEGLVREMRREGHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVV--- 164
Query: 193 SVAHAYKVFL---KFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMKEM 238
H V + K K S+ +++ + LI C+ + A ++EM
Sbjct: 165 -FNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEM 223
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
HG +PD ++T ++ + E +M E GC P+ +T ++++ K ++
Sbjct: 224 SSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRV 283
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFIL------SKAVRFL-------------IYNTM 339
+AL ++ +D D Y++ + L S A++ + YNT+
Sbjct: 284 EDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTV 343
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I+ E A + ++ + C PD T + + R+++ L+L RE+
Sbjct: 344 INCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEE---ALDLARELTV 400
Query: 400 KGIVPQESTHKMLAEEL 416
KG+ P T +L L
Sbjct: 401 KGLSPDVYTFNILINAL 417
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 83/199 (41%), Gaps = 19/199 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ LI + + A +E+ G SPD ++ I C+ D +EM+
Sbjct: 375 FNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMK 434
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
GC P +T I++ L ++ AL + +M+S+ C T Y+++I L K +R
Sbjct: 435 SSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIE 494
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ +NT+I C +A +L +++ ++ +P+ T+ L
Sbjct: 495 EAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSIL 554
Query: 376 KMCCHKKRMKDGMLVLNLM 394
C + +K +L M
Sbjct: 555 THYCKQGNIKKAADILETM 573
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 90/203 (44%), Gaps = 19/203 (9%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEI--DELSNGYVSLAAMST-VMRRLDTRAM 181
G + T+N +++ L K+K+ EL++++ + L ++ ++ T ++ + +
Sbjct: 507 GISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKA 566
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+ +++T+ A+ +++ D ++ + LI+G CK ++ A K ++ M
Sbjct: 567 ADILETM-----TANGFEI-----DVVT-----YGTLINGLCKAGRTQVALKLLRGMRIK 611
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL-EKAKQIYE 300
G P +Y I+ R + R +EM E G P +T IV +L I E
Sbjct: 612 GIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKE 671
Query: 301 ALKVYEKMKSDDCLTDTSFYSSL 323
A +M + + + S + L
Sbjct: 672 AFDFLVEMVNKGFMPEFSSFRML 694
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 155/362 (42%), Gaps = 46/362 (12%)
Query: 90 DVDKVSEIL---RKRYPSPDKVVEALKCFCFTWAKTQT---GYMHTPE------TYNAMV 137
D+DK E+L R+ P PD + A+ Y + E T+ M+
Sbjct: 74 DLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMI 133
Query: 138 EALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHA 197
+ L K+ + + E + + + TV +VL++ K + V A
Sbjct: 134 DGLCKANR----------LPEATTYFAKMKKKGTVPNEW---TYNVLINGFCKVHKVHRA 180
Query: 198 YKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256
Y + + K+ ++ + + +IHG+C+ K D A K ++M ++G P+ V+Y +
Sbjct: 181 YLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSG 240
Query: 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316
CR + L EM+E+G +P + +M L K +I ALKV+E + DC D
Sbjct: 241 LCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPD 300
Query: 317 TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
YS+LI L KA R + AC KL +K+ E+SC+PD T +
Sbjct: 301 VVAYSTLIAGLCKAGR-------LDEAC---------KLFEKMRENSCEPDVVTFTALMD 344
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHA 435
C R+++ VL M + + P T+ L + L K + +A+E ++
Sbjct: 345 GLCKGDRLQEAQQVLETMED---RNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRG 401
Query: 436 TE 437
E
Sbjct: 402 IE 403
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 116/278 (41%), Gaps = 27/278 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D + L+D L K A ++F +K K C + + LI G+CK + D A+
Sbjct: 440 DIITYNTLIDGLCKTGRAPEANRLFGDMKAKFC-NPDVITYSCLIGGFCKLERIDMARTL 498
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+M + PD V+++ +E YC + L+EM C P V T T ++ K
Sbjct: 499 FDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCK 558
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLI 335
++ EA +V ++M C + Y++LI +A + +
Sbjct: 559 VGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVIT 618
Query: 336 YNTMISSACVRSEEGNALKLRQKIEED-SCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
Y ++I C + A K+ +++E D +CK D + + C RM L L+
Sbjct: 619 YRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMS---AALELL 675
Query: 395 REMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
+ G P+ + L L + K LG A E ++E+
Sbjct: 676 EAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEM 713
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 146/349 (41%), Gaps = 48/349 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR------RLDT-----RA 180
TYN ++ K K + L+KE+ E S ++ STV+ ++DT R
Sbjct: 163 TYNVLINGFCKVHKVHRAYLLLKEMKE-SGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQ 221
Query: 181 M------------SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRK 227
M + L+ L + + AY++ + ++ + +D L+ G CKT K
Sbjct: 222 MVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGK 281
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
D A K ++ PD V+Y+ I C+ + ++M+E C+P V+T T
Sbjct: 282 IDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTA 341
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA--VR------------- 332
+M L K ++ EA +V E M+ +C + YSSLI L K VR
Sbjct: 342 LMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRG 401
Query: 333 ----FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
+ YN++I C+ + +AL L +++ C PD T+ + C R +
Sbjct: 402 IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEAN 461
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDELLTHAT 436
L +M +K P T+ L K + + A+ D++L A
Sbjct: 462 ---RLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAV 507
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 23/251 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
S L+D L K V A +VF + I + ++ LIHG+C T D A M+EM
Sbjct: 375 SSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTA 434
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD ++Y I+ C+ + + +M+ K C P VIT + ++ K ++I
Sbjct: 435 TGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDM 494
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI------FILSKAVRFL-------------IYNTMIS 341
A +++ M L D +S+L+ ++ A R L Y +++
Sbjct: 495 ARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVD 554
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C A ++ +++ + C+P+ T+ + C R + L+ EM+ G
Sbjct: 555 GFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFC---RAGKPTVAYRLLEEMVGNG 611
Query: 402 IVPQESTHKML 412
+ P T++ L
Sbjct: 612 VQPNVITYRSL 622
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 101/247 (40%), Gaps = 26/247 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L + R+ D +K + G +P+ +Y I+ C+ D K L+EM+
Sbjct: 27 YNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELLEEMR 86
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
E G P V+HAL KA+ +AL + M +C + ++ +I L KA R
Sbjct: 87 ESGPVPDAAIYNFVIHALCKARNTAKALDYFRSM---ECEKNVITWTIMIDGLCKANRLP 143
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
YN +I+ C + A L ++++E P+ T++ +
Sbjct: 144 EATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVI 203
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGN-AKERIDELLTH 434
C + ++ L R+M+ G +P T+ L L + L + A E +DE+
Sbjct: 204 HGFCRQTKVDT---AYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRER 260
Query: 435 ATEQRTF 441
+ F
Sbjct: 261 GLQPDKF 267
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 22/173 (12%)
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
Q GF + +Y E R + + + LK G P+V T +V+ L K+ +
Sbjct: 17 QQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLD 76
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
+A ++ E+M+ + D + Y+ +I L KA NT + RS E
Sbjct: 77 KACELLEEMRESGPVPDAAIYNFVIHALCKA-----RNTAKALDYFRSME---------- 121
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C+ + T + C R+ + M++ KG VP E T+ +L
Sbjct: 122 ----CEKNVITWTIMIDGLCKANRLPEATTYFAKMKK---KGTVPNEWTYNVL 167
>gi|125541207|gb|EAY87602.1| hypothetical protein OsI_09013 [Oryza sativa Indica Group]
Length = 555
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 139/326 (42%), Gaps = 49/326 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALG----KSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
F WA Q GY H TYN +++ L K+++FG++ +++ + V + + +
Sbjct: 133 FVWASHQGGYEHEAATYNDVIDILSGTRYKARQFGVLCDVLDHMKRRRTRSVPVDDLLGI 192
Query: 173 MRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209
+R +T A++VL+D K V A VF + K +
Sbjct: 193 LRAYTEKHLTHLRKLAKKRRVRMRTPPETDALNVLLDAFCKSGMVREAEAVFSRVKRKLL 252
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+++ + +L GWC+ R A K ++EM Q +P+ +Y I+ +C +
Sbjct: 253 GNAETYSILFFGWCRARDPKRAMKVLEEMIQMKHTPENFTYNAAIDSFCSAGLVSEARDL 312
Query: 270 LKEMQEKG---CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
+ M+ +G P+ T +I++ AL KA Q+ E ++ +M+ C+ D S Y LI
Sbjct: 313 FEFMRTEGSTISSPTAKTYSIMIAALAKAGQMEECFELISEMRKCGCMPDVSTYKDLIEG 372
Query: 327 LSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
+ L+ + + ++ CV E A PD T+ LK+ C ++ D
Sbjct: 373 M------LLVDKLDAAYCVLDEMAKA----------GFPPDIVTYNCFLKVLCGLQKADD 416
Query: 387 GMLVLNLMREMLSKGIVPQESTHKML 412
L L M+ P T+ ML
Sbjct: 417 A---LELCERMIEAHCEPSVHTYNML 439
>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
Length = 523
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 143/345 (41%), Gaps = 45/345 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE-------------LSNGY 163
F WAK G+ H+ E+Y+ +V LG S++F ++W+ + E+ E + Y
Sbjct: 99 FLWAKRIPGFEHSEESYHILVNILGTSRQFAILWDFLIEMRESHDFEINQEIIWLVFRSY 158
Query: 164 VSLAAMSTVMRRLDTRA----------MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
S +R D A + L+ L K V A + F + K ++
Sbjct: 159 SRANLPSDAIRAFDRMAEFGLRPSVDDLDKLLYVLCKCKHVKCAQQFFDRVKHKFEAKAK 218
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ +L+ GW ++ A+K EM G + D ++Y +E C+ + + +E+
Sbjct: 219 TYSILVRGWGDIGEAVEARKVFDEMRGRGCALDVLAYNSLLEALCKGGNVDEAYKMFREI 278
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK---- 329
G +P + I + A +A I+ V ++MK D + + Y+ +I L K
Sbjct: 279 GSHGVEPDACSYAIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNCIIKKLCKNGKV 338
Query: 330 --AVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
A + L YNT+++ C SE A KL + +D+C PD ++
Sbjct: 339 EDAYQLLHEMMERGVSPDAWSYNTILAYHCEHSEVNRATKLISIMVKDNCLPDRHSYNML 398
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
LK+ R + M E +G P ST+ ++ L KK
Sbjct: 399 LKLLVRVGRFDRATEIWESMGE---RGFYPSVSTYSVMIHGLCKK 440
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 54/268 (20%), Positives = 109/268 (40%), Gaps = 56/268 (20%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
YN+++EAL K +++ +EI S+G D + ++ + +
Sbjct: 254 AYNSLLEALCKGGNVDEAYKMFREIG--SHGVEP-----------DACSYAIFIRAYCEA 300
Query: 192 NSVAHAYKVFLKFKDCISLSSQIF--DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
N++ + V + K L +F + +I CK K + A + + EM + G SPD S
Sbjct: 301 NNIHSVFSVLDRMKR-YDLVPNVFTYNCIIKKLCKNGKVEDAYQLLHEMMERGVSPDAWS 359
Query: 250 YTCFIEHYC-----------------------------------REKDFRKVDYTLKEMQ 274
Y + ++C R F + + M
Sbjct: 360 YNTILAYHCEHSEVNRATKLISIMVKDNCLPDRHSYNMLLKLLVRVGRFDRATEIWESMG 419
Query: 275 EKGCKPSVITCTIVMHALEKAK-QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
E+G PSV T ++++H L K K ++ EA + +E M + + S++ + ++ + F
Sbjct: 420 ERGFYPSVSTYSVMIHGLCKKKGKLEEACRYFETMIDEGI---PPYASTIEMLRNRLIGF 476
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEE 361
+ + + AC + E G + +++ +E
Sbjct: 477 GLLDHIEILAC-KMERGTSCSIQELAKE 503
>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 543
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 129/287 (44%), Gaps = 23/287 (8%)
Query: 172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF--DVLIHGWCKTRKSD 229
V+ L A + +T+V A + D + + F + LI C
Sbjct: 118 VVEALGPSATIITYNTMVNGYCRAGNIDAARRMIDSVPFAPDTFTYNPLIRALCVRGCVL 177
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
A +M G SP V+Y+ ++ C+E +++ L EM+ KGC+P ++T +++
Sbjct: 178 DALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLI 237
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF---------------- 333
+A+ + EALKV + S C D Y+ ++ L + R+
Sbjct: 238 NAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCA 297
Query: 334 ---LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM-L 389
+ +N +I+S C + G A K+ ++ E C PD T++ + C ++R+ + + L
Sbjct: 298 PDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKL 357
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKKSLGN-AKERIDELLTHA 435
+ L+ EM+SK +P + T + L +K L + A + +DE+ H
Sbjct: 358 LKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHG 404
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 118/250 (47%), Gaps = 27/250 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D +VL++ + + V A KV L C + + ++ C + + + A K
Sbjct: 229 DIVTYNVLINAMCSQGDVGEALKVLNSLPSYGC-KPDAVTYTPVLKSLCSSERWEEADKL 287
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ +MF + +PD V++ I C++ + L +M E GC P +IT + +M L K
Sbjct: 288 LTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCK 347
Query: 295 AKQIYEALKVYEK----MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEG 350
+++ EA+K+ ++ M S +C+ D + +NT+I+S C +
Sbjct: 348 ERRVDEAIKLLKELLAEMVSKNCIPDQ----------------VTFNTIITSLCQKGLFD 391
Query: 351 NALKLRQKIEEDSCKPDCETHARSL-KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
A+K+ ++ E C PD T+ + C + ++ + +LNL M+S G+ P +T+
Sbjct: 392 RAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNL---MVSNGLCPDTTTY 448
Query: 410 KMLAEELEKK 419
K LA L ++
Sbjct: 449 KSLAFGLSRE 458
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 115/267 (43%), Gaps = 36/267 (13%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFK------DCISLSSQIFDVLIHGWCKTRKSDY 230
D + ++ +L ++ V A KV + D I+ SS ++ G CK R+ D
Sbjct: 299 DEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSS-----IMDGLCKERRVDE 353
Query: 231 AQKAMKEMFQHGFS----PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
A K +KE+ S PD V++ I C++ F + + EM E GC P + T
Sbjct: 354 AIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYN 413
Query: 287 IVMHA-LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
++ L K+ + EAL + M S+ DT+ Y SL F LS+
Sbjct: 414 CIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSR---------------- 457
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
E A+ + ++++ PD + L C K R L ++ M+S G +P
Sbjct: 458 EDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKKWRTD---LAIDFFAYMVSNGCMPD 514
Query: 406 ESTHKMLAEELEKKS-LGNAKERIDEL 431
EST+ +L E + + L AKE + L
Sbjct: 515 ESTYIILVEGIAYEGFLEEAKELLGNL 541
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 88/201 (43%), Gaps = 15/201 (7%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP+ TY+++++ L K ++ +L+KE+ LA M + D + ++
Sbjct: 332 TPDIITYSSIMDGLCKERRVDEAIKLLKEL---------LAEMVSKNCIPDQVTFNTIIT 382
Query: 187 TLVKRNSVAHAYKVFLKFKD--CISLSSQIFDVLIHGW-CKTRKSDYAQKAMKEMFQHGF 243
+L ++ A KV + + CI ++ ++ G+ CK+ K++ A + M +G
Sbjct: 383 SLCQKGLFDRAIKVVDEMSEHGCIP-DITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGL 441
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD +Y RE + + + +Q G P + ++ L K + A+
Sbjct: 442 CPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKKWRTDLAID 501
Query: 304 VYEKMKSDDCLTDTSFYSSLI 324
+ M S+ C+ D S Y L+
Sbjct: 502 FFAYMVSNGCMPDESTYIILV 522
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 17/177 (9%)
Query: 273 MQEKGCKPSVITCTIVMHAL------EKAKQIYEALK------VYEKMKSDDC-LTDTSF 319
+ G P+VI C I++ L A+++ EAL Y M + C +
Sbjct: 87 ISGSGKDPAVIPCNILIKKLCADGRVADAERVVEALGPSATIITYNTMVNGYCRAGNIDA 146
Query: 320 YSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC 379
+I + A YN +I + CVR +AL + + C P T++ L C
Sbjct: 147 ARRMIDSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATC 206
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
+ K +++L+ EM SKG P T+ +L + + +G A + ++ L ++
Sbjct: 207 KESGYKQAVVLLD---EMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYG 260
>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
Length = 487
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 148/348 (42%), Gaps = 58/348 (16%)
Query: 117 FTWAKTQ--TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR 174
F WA+ Q G HT +Y+ +V +L K +++ LMW++V + + G ++ S +MR
Sbjct: 89 FEWARRQKRGGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRK--EGVANVETFSIIMR 146
Query: 175 RL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211
+ + A + L+ L K +V A ++F K + S
Sbjct: 147 KYARAQKFDEAVYTFNIMERYGVAHNLAAFNSLLGALCKSKNVRKAQEIFDKMNNRFSPD 206
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
++ + +L+ GW + ++ +M G PD V+Y ++ C+ + ++
Sbjct: 207 AKTYSILLEGWGRAPNLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQ 266
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
+M +GC+P+ ++++H +I +A+ + M+ D + D Y++L+ K
Sbjct: 267 DMSSRGCQPTTFIYSVLVHTYGVDMRIEDAVATFLDMEKDGIVPDVVVYNALVTAFCKVK 326
Query: 332 RF-----------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
+F +I NT+IS + +E + R I+ CKPD
Sbjct: 327 KFDNAFRVMDDMEGHGISPNSRTWNIILNTLISLG--KDDEAYRV-FRNMIKR--CKPDS 381
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+T+ +KM C +++ + V MR K +P T +L L
Sbjct: 382 DTYTMMIKMFCENDKIEMALKVWKYMR---LKQFLPSMHTFSVLINGL 426
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
YNA+V A K KKF + + +D++ +S ++R +++++TL+
Sbjct: 314 VYNALVTAFCKVKKFDNAFRV---MDDMEGHGISP----------NSRTWNIILNTLISL 360
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
AY+VF S + ++I +C+ K + A K K M F P +++
Sbjct: 361 GKDDEAYRVFRNMIKRCKPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFS 420
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
I C + + + L++M EKG +P
Sbjct: 421 VLINGLCDKGEVSQACVLLEDMIEKGIRP 449
>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
Length = 551
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 153/367 (41%), Gaps = 84/367 (22%)
Query: 104 SPDKVVEALKCFC---------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVK 154
SP+ V E LK F WA+ Q G+ +T E ++ ++EALGK K+F L+W LV+
Sbjct: 130 SPELVAEVLKNLSNAGMLALAFFRWAERQEGFSYTAEGFHNLIEALGKIKQFKLVWSLVE 189
Query: 155 EIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
+ G +S ++RR + V A + F K L +++
Sbjct: 190 TMR--CRGLLSKDTFKLIVRR------------YARARKVKEAVETFEKM-SIFGLKTEL 234
Query: 215 FDV--LIHGWCKTRKSDYAQKAMKEMFQHG-FSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
D LI K+++ AQ KEM + G F PD +YT +E + EKD V +
Sbjct: 235 SDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQ 294
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
EM + G +P V+ +++ A K+ + EA+KV+ +M++ C+ Y LI L
Sbjct: 295 EMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEE 354
Query: 332 RF---LIY----------------NTMISSACVRSEEGNALKL----------------- 355
R L Y N ++ + C S+ +A K+
Sbjct: 355 RLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMVDEMRECKIGPNSRTYD 414
Query: 356 --------RQKIEE----------DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
QK EE D C+P T+ + M C R+ + LN+ ++M
Sbjct: 415 VILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNGRVD---MALNVWKQM 471
Query: 398 LSKGIVP 404
+G++P
Sbjct: 472 GERGVLP 478
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 74/346 (21%), Positives = 131/346 (37%), Gaps = 48/346 (13%)
Query: 96 EILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE 155
+++ +RY KV EA++ F + G YN +++ L KSK+ + KE
Sbjct: 203 KLIVRRYARARKVKEAVETF---EKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKE 259
Query: 156 IDELSNGYVSLAAMSTVMR-----------------------RLDTRAMSVLMDTLVKRN 192
+ L + +M R D A +L+ K
Sbjct: 260 MKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSG 319
Query: 193 SVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
A KVF ++ C+ S ++ +LI+G + D A K ++ + GF + +
Sbjct: 320 KCDEAIKVFYEMEASGCMP-SPHVYCMLINGLGSEERLDEALKYFEQYKKSGFPMEVPTC 378
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ YCR F + EM+E P+ T +++H L K+++ EA V+++M
Sbjct: 379 NAVVGAYCRASKFEHAFKMVDEMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGM 438
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
D C + Y M+ C AL + +++ E P
Sbjct: 439 DGCEPQLN----------------TYTMMVGMFCSNGRVDMALNVWKQMGERGVLPCMHM 482
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ + C + R+++ + +EML KGI P L E L
Sbjct: 483 FSALINGLCFENRLEEACVYF---QEMLDKGIRPPGQLFSNLKEAL 525
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 103/237 (43%), Gaps = 25/237 (10%)
Query: 110 EALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELS-NGYVSLAA 168
EA+K F + +G M +P Y ++ LG ++ E +K ++ +G+
Sbjct: 323 EAIKVF---YEMEASGCMPSPHVYCMLINGLGSEERLD---EALKYFEQYKKSGF----- 371
Query: 169 MSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRK 227
++ + ++ + + HA+K+ + ++C I +S+ +DV++H K++K
Sbjct: 372 ------PMEVPTCNAVVGAYCRASKFEHAFKMVDEMRECKIGPNSRTYDVILHYLIKSQK 425
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL---KEMQEKGCKPSVIT 284
+ A + M G P +YT + +C +VD L K+M E+G P +
Sbjct: 426 FEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNG---RVDMALNVWKQMGERGVLPCMHM 482
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMIS 341
+ +++ L ++ EA +++M +S+L L + R + M S
Sbjct: 483 FSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRISLAQEMAS 539
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 20/217 (9%)
Query: 104 SPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGY 163
S +++ EALK F ++G+ T NA+V A ++ KF +++V E+ E G
Sbjct: 352 SEERLDEALKYF---EQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMVDEMRECKIG- 407
Query: 164 VSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGW 222
++R V++ L+K AY VF + D + +++ +
Sbjct: 408 ------------PNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMF 455
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
C + D A K+M + G P ++ I C E + +EM +KG +P
Sbjct: 456 CSNGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPG 515
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF 319
+ + AL + +I A ++ K+ D + T F
Sbjct: 516 QLFSNLKEALVEGGRISLAQEMASKL---DAIRKTPF 549
>gi|413932624|gb|AFW67175.1| hypothetical protein ZEAMMB73_588183 [Zea mays]
Length = 520
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 133/304 (43%), Gaps = 49/304 (16%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALG----KSKKFGLMWEL-------------VKEIDEL 159
F WA Q GY H P TYN +++ L KS++FG++ + V+++ E+
Sbjct: 98 FAWASQQDGYNHEPTTYNDIIDILSGTRYKSRQFGVLCNVLDHMKRHGSRSVPVEDLLEI 157
Query: 160 SNGYVS--------LAAMSTVMRRL--DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209
Y LA V R +T A++VL+D K V A VF + K +
Sbjct: 158 LRAYTEKHLTHMRKLAKKRRVRMRTPPETDALNVLLDAFCKCGMVKEAEAVFGRVKRKLL 217
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+++ + L GWC+ R A K ++EM Q +P+ +Y I +C +
Sbjct: 218 GNAETYSTLFFGWCRARDPKKAMKVLEEMIQMKHTPESFTYVAAIISFCSAGLVSEAREL 277
Query: 270 LKEMQEKG---CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-- 324
+ M+ +G P+ T +I++ AL KA ++ E ++ M+S C+ D + Y LI
Sbjct: 278 FEFMRTEGLTISSPTAKTYSIMIVALAKADRMEECFELLSDMRSCGCMPDVTTYKDLIEG 337
Query: 325 ----FILSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
L A R L YN ++ C + +AL+L +++ E C+P
Sbjct: 338 MCLVGKLDAAYRVLDEMGRAGFPPDIVTYNCFLNVFCSHRKADDALELCERMIEAHCEPS 397
Query: 368 CETH 371
T+
Sbjct: 398 VHTY 401
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 92/204 (45%), Gaps = 15/204 (7%)
Query: 128 HTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT 187
HTPE++ V A+ GL+ E + + + +++++ + + S+++
Sbjct: 251 HTPESFT-YVAAIISFCSAGLVSEARELFEFMRTEGLTISSPTA-------KTYSIMIVA 302
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
L K + + +++ + C + + LI G C K D A + + EM + GF PD
Sbjct: 303 LAKADRMEECFELLSDMRSCGCMPDVTTYKDLIEGMCLVGKLDAAYRVLDEMGRAGFPPD 362
Query: 247 GVSYTCFIEHYCREKDFRKVDYTL---KEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
V+Y CF+ +C RK D L + M E C+PSV T ++M + + + AL
Sbjct: 363 IVTYNCFLNVFC---SHRKADDALELCERMIEAHCEPSVHTYNMMMMMFFEMGEAHRALD 419
Query: 304 VYEKMKSDDCLTDTSFYSSLIFIL 327
+ +M C Y +I+ L
Sbjct: 420 ICLEMDKRRCQRAIDTYEIMIYGL 443
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 128/290 (44%), Gaps = 33/290 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY++++ LGK + ++L +E M R+ D+ + LMD L K
Sbjct: 186 TYSSLITGLGKDGETVKAFKLFQE-------------MKRRGRKPDSITFTALMDALGKA 232
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A ++ + K+ + ++ LI G+ K A + EM ++G PD V+Y
Sbjct: 233 GRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTY 292
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+C I + + LK+M+++GC P IT +++ L KA + +A +++++MKS
Sbjct: 293 SCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKS 352
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
C D YS+LI L KA R + SACV EE +E +PD T
Sbjct: 353 KGCNPDVVTYSTLITALGKAAR-------VESACVLFEE---------MESVGIQPDLFT 396
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ + + ++ D L EM KG+ P T+ L +
Sbjct: 397 YCSIITVLGKAGQVDD---ADRLFSEMRGKGLSPDVITYNAFLNSLGRGG 443
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 142/310 (45%), Gaps = 38/310 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +V+ LGK+ +F L+ E+ + NG V D R + L+ TL K
Sbjct: 81 TYNTLVDCLGKAGQFDEALRLLAEMRD--NGCVP-----------DVRTYNCLISTLGKA 127
Query: 192 NSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
++ A+ +F + ++ C+ + ++ LI+G K +S A + ++EM +HG PD ++
Sbjct: 128 GRLSEAFTLFAEMRERGCVP-DTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMT 186
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+ I ++ + K +EM+ +G KP IT T +M AL KA ++ +AL++ ++MK
Sbjct: 187 YSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMK 246
Query: 310 SDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEG 350
Y++LI K + Y+ +I+ S+
Sbjct: 247 ERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLD 306
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A ++ +K+E++ C PD T+ + + D + + M+ SKG P T+
Sbjct: 307 EACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMK---SKGCNPDVVTYS 363
Query: 411 MLAEELEKKS 420
L L K +
Sbjct: 364 TLITALGKAA 373
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 112/241 (46%), Gaps = 31/241 (12%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L++ K + + AQ +E+ ++PD VSY+C I R + + EMQ
Sbjct: 12 YNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQ 71
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
KGCKP++ T ++ L KA Q EAL++ +M+ + C+ D Y+ LI L KA R
Sbjct: 72 AKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLS 131
Query: 333 --FLIYNTMISSACV-----------------RSEEGNALKLRQKIEEDSCKPDCETHAR 373
F ++ M CV RS++ A++L +++E C PD T++
Sbjct: 132 EAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQK--AMELLEEMERHGCPPDVMTYSS 189
Query: 374 SLKMCCHKKRMKDGMLV--LNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDE 430
+ KDG V L +EM +G P T L + L K + +A E +DE
Sbjct: 190 LI-----TGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDE 244
Query: 431 L 431
+
Sbjct: 245 M 245
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 121/313 (38%), Gaps = 44/313 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMS---TVMRRL 176
TYNA++ GK + L+ E+ L G + + + V++++
Sbjct: 256 TYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKM 315
Query: 177 -------DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRK 227
DT + L++ L K + A ++F +K K C + + LI K +
Sbjct: 316 EKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGC-NPDVVTYSTLITALGKAAR 374
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
+ A +EM G PD +Y I + D EM+ KG P VIT
Sbjct: 375 VESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNA 434
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRS 347
+++L + + EA K++E MK L D + Y +L+ LSK
Sbjct: 435 FLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKT----------------K 478
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
E +A L +++ E C D L++ + + +L SKG+ P S
Sbjct: 479 EVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFAN---SKGLWPGAS 535
Query: 408 THKMLAEELEKKS 420
++ L + L K
Sbjct: 536 SYNALIDALAKAG 548
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 242 GF-SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
GF SP+ V+Y + + + +E++ P V++ + ++++L +A +
Sbjct: 3 GFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEA 62
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
AL+V +M++ C + Y++L+ L KA +F AL+L ++
Sbjct: 63 ALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQF----------------DEALRLLAEMR 106
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
++ C PD T+ + R+ + + MRE +G VP T+ L L K
Sbjct: 107 DNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRE---RGCVPDTFTYNSLIYGLGKVG 163
Query: 421 LGN-AKERIDELLTHA 435
A E ++E+ H
Sbjct: 164 RSQKAMELLEEMERHG 179
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 87/196 (44%), Gaps = 18/196 (9%)
Query: 132 TYNAMVEALGKSKKFG---LMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL 188
TYNA + +LG+ +F ++E +KE L + A + + + + L+ L
Sbjct: 431 TYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKEL 490
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
+++ + LKF +C+ + + +V D A + ++ G P
Sbjct: 491 IEQGCAFDS----LKFDECLEILTSWGNV-----------DEAHELLQFANSKGLWPGAS 535
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
SY I+ + + TL++++E+G KP +++ + ++ AL + QI A ++ E+M
Sbjct: 536 SYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEM 595
Query: 309 KSDDCLTDTSFYSSLI 324
YS+L+
Sbjct: 596 SKRGLKLSPRSYSNLV 611
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 56/287 (19%), Positives = 113/287 (39%), Gaps = 33/287 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY+ ++ ALGK+ + + + V M +V + D ++ L K
Sbjct: 361 TYSTLITALGKAAR-------------VESACVLFEEMESVGIQPDLFTYCSIITVLGKA 407
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A ++F + + +S ++ ++ + + A+K ++M + G PD +Y
Sbjct: 408 GQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATY 467
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ + K+ LKE+ E+GC + + L + EA ++ + S
Sbjct: 468 DALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANS 527
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
S Y++LI L+KA R SE N L + ++E KPD +
Sbjct: 528 KGLWPGASSYNALIDALAKAGRV-------------SEAFNTL---EDLKEQGGKPDIVS 571
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
++ + ++ L+ EM +G+ ++ L +L+
Sbjct: 572 YSSLISALGQTGQID---TAFELLEEMSKRGLKLSPRSYSNLVRKLQ 615
>gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa]
gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 145/326 (44%), Gaps = 48/326 (14%)
Query: 111 ALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMS 170
A + FC WA + G++H TY++M+ L K+++F M +++E+ E ++L S
Sbjct: 123 AFRFFC--WAAEKPGFVHDSRTYHSMMIILAKARQFETMMSMLEEMGE--KRLLTLDTFS 178
Query: 171 TVMR-----------------------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC 207
MR R+ ++ L+D+L + A +F K +
Sbjct: 179 IAMRAFAAAKERKKAVGIFELMKNHKYRVGVETINALLDSLGRAKLGKEAQALFGKLEGR 238
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ + + + VL++GWC+ + A + EM GF PD V++ +E R K
Sbjct: 239 FTPNLRTYTVLLNGWCRVKNLMEAGRIWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDAI 298
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ M+ KG P V + TI++ L K ++ EA+ + +M C D + Y+ L+
Sbjct: 299 KFFEVMKAKGPSPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLMTGY 358
Query: 328 SKAVRF-LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
R ++Y +L ++++E C PD +T+ +K+ +RM D
Sbjct: 359 GNHKRMDMVY-----------------ELLKEMKEKGCPPDGKTYNALIKLMT-SQRMPD 400
Query: 387 GMLVLNLMREMLSKGIVPQESTHKML 412
+ + ++M+ GI P ++ M+
Sbjct: 401 D--AVRIYKKMIQNGIEPSIHSYNMI 424
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 81/194 (41%), Gaps = 14/194 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T+N M+E L +SKK S+ M D R+ ++L+ L K+
Sbjct: 280 THNIMLEGLLRSKK-------------RSDAIKFFEVMKAKGPSPDVRSYTILIRDLCKQ 326
Query: 192 NSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A F + D + ++ L+ G+ ++ D + +KEM + G PDG +Y
Sbjct: 327 TKMKEAVGYFYEMVDSGCHPDAAVYTCLMTGYGNHKRMDMVYELLKEMKEKGCPPDGKTY 386
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I+ ++ K+M + G +PS+ + ++M + + + V+++M
Sbjct: 387 NALIKLMTSQRMPDDAVRIYKKMIQNGIEPSIHSYNMIMKSYFRIRNYEMGHAVWDEMSK 446
Query: 311 DDCLTDTSFYSSLI 324
D + Y+ I
Sbjct: 447 KGFCPDDNSYTVFI 460
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 90/264 (34%), Gaps = 71/264 (26%)
Query: 66 WVESLKLNEQSRISSHA------LSEDHETDVDKVSEILRKRYPSPD------------- 106
W E L + I +H L +D K E+++ + PSPD
Sbjct: 266 WNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDAIKFFEVMKAKGPSPDVRSYTILIRDLCK 325
Query: 107 --KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV 164
K+ EA+ F + +G Y ++ G K+ +++EL+KE+ E
Sbjct: 326 QTKMKEAVGYF---YEMVDSGCHPDAAVYTCLMTGYGNHKRMDMVYELLKEMKE------ 376
Query: 165 SLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCK 224
K C + ++ LI
Sbjct: 377 ----------------------------------------KGCPP-DGKTYNALIKLMTS 395
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
R D A + K+M Q+G P SY ++ Y R +++ EM +KG P +
Sbjct: 396 QRMPDDAVRIYKKMIQNGIEPSIHSYNMIMKSYFRIRNYEMGHAVWDEMSKKGFCPDDNS 455
Query: 285 CTIVMHALEKAKQIYEALKVYEKM 308
T+ + L + EA K E+M
Sbjct: 456 YTVFIGGLISQGRSEEACKYLEEM 479
>gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 587
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 104/463 (22%), Positives = 188/463 (40%), Gaps = 96/463 (20%)
Query: 61 PSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRK---RYPSPDKVVEALKCFCF 117
P+ + + +L N S L+ +T + +L + S K++ +L +
Sbjct: 70 PNDFTLISTLFTNPSISPGSSLLTNLTQTGIKPTPPLLHAVFDHFASSPKLLHSL----Y 125
Query: 118 TWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV----KEIDELSNGYVSLAAMSTVM 173
WA Q G+ +++++ AL K K+F W LV + D+ VS+ + ++
Sbjct: 126 LWALNQPGFKPDSSLFDSVINALAKMKEFDDAWSLVLDRIRRDDDDDEKLVSVGTFAIII 185
Query: 174 RRLDTRAM---------------------------SVLMDTLVKRNSVAHAYKVFLKFKD 206
RR M +L+D+L K S A + L+ K+
Sbjct: 186 RRYARAGMHKAAIRTFEFAKDKKSIVDSVSEMSLFEILIDSLCKEGSAREASEYLLRRKE 245
Query: 207 C---ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263
S ++++++++GW + RK +A++ +EM P V+Y +E YCR +
Sbjct: 246 TDLGWVPSIRVYNIMLNGWFRARKLKHAERLWEEMKNENVRPSVVTYGTLVEGYCRMRRV 305
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
K + EM ++G KP+ I ++ AL +A + EAL + E+ S Y+SL
Sbjct: 306 EKALEMVGEMTKEGIKPNAIVYNPIIDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSL 365
Query: 324 I-------------FILSKAVR--FL----IYNTMIS--SACVRSEEGNALKLRQKIEED 362
+ IL K + FL YN S C + +EG + L K+ E
Sbjct: 366 VKGFCKAGDIEGASKILKKMISRGFLPIPTTYNYFFRYFSRCGKVDEG--MNLYTKMIES 423
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR--------------------------- 395
PD T+ LKM C +++++ + V MR
Sbjct: 424 GHNPDRLTYHLVLKMLCEEEKLELAVQVSMEMRHKGYDMDLATSTMLTHLLCKMHKLEEA 483
Query: 396 -----EMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
+M+ +GI+PQ T + L EL+K+ + ++ L++
Sbjct: 484 FAEFEDMIRRGIIPQYLTFQKLNVELKKQGMNEMARKLCHLMS 526
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 23/247 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ +++G CK + + A+K EM + G +PDGVSY + YC+ + EM
Sbjct: 228 FNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMA 287
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
+KG P V+T T ++HA+ +A + A+ + +M+ + +++LI
Sbjct: 288 QKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLD 347
Query: 325 --FILSKAVR-------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ K +R + YN +I+ C A +L ++E KPD T++ L
Sbjct: 348 DALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTIL 407
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTH 434
C ++ D L R+ML KG+VP T+ L L E++ LG+A E +++L
Sbjct: 408 SGYC---KIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQL 464
Query: 435 ATEQRTF 441
+ F
Sbjct: 465 GLQPDEF 471
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 17/216 (7%)
Query: 110 EALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAM 169
EAL F Q G + T+ +++ A+ ++ LV ++ E
Sbjct: 278 EALAVFA---EMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERG--------- 325
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKS 228
R++ + L+D + + A + ++C I S ++VLI+G+CK +
Sbjct: 326 ----LRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRM 381
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A++ + EM G PD V+Y+ + YC+ D ++M +KG P IT + +
Sbjct: 382 DEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSL 441
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ L + +++ +A +++EKM D Y++LI
Sbjct: 442 IRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLI 477
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 125/287 (43%), Gaps = 16/287 (5%)
Query: 159 LSNGYVSLAAMST---VMRRLDTRAM-------SVLMDTLVKRNSVAHAYKVFLK-FKDC 207
L NGY L M ++ ++ + M S ++ K A+++ K K
Sbjct: 371 LINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKG 430
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ + + LI G C+ R+ A + ++M Q G PD +YT I+ +C+E + +K
Sbjct: 431 VVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKAL 490
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
EM +KG P V+T ++++ L K+ + EA ++ K+ +D + D Y +L+
Sbjct: 491 SLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCC 550
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
A F ++ ++ A K+ Q + + K D ++ + C R +
Sbjct: 551 RTA-EFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHC---RGGNI 606
Query: 388 MLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLG-NAKERIDELLT 433
M L+ +++L G P ++ L L ++ + A I ELL
Sbjct: 607 MKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQELLN 653
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 93/212 (43%), Gaps = 20/212 (9%)
Query: 204 FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE-MFQHGFSPDGVSYTCFIEHYCREKD 262
+D ++ + +++L+ C + + A + + M G +P+ V+Y + +CR +
Sbjct: 146 LRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGE 205
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
+ + M+E G +PS++T V++ L KA ++ +A K++++M + D
Sbjct: 206 VDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDG----- 260
Query: 323 LIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
+ YNT++S C AL + ++ + PD T + C
Sbjct: 261 -----------VSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAG 309
Query: 383 RMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
++ + ++ MRE +G+ E T L +
Sbjct: 310 NLERAVALVGQMRE---RGLRMNEFTFTALID 338
>gi|116789117|gb|ABK25122.1| unknown [Picea sitchensis]
Length = 572
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 140/339 (41%), Gaps = 47/339 (13%)
Query: 103 PSPDKVVEALKCF---------CFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
PSP+ V + L+ F WA +Q Y HT Y+ M+ LG +KF W L+
Sbjct: 137 PSPNLVQKLLRRLQYDGKAAFRVFQWAGSQPDYSHTVSVYHTMISILGVHRKFDKGWGLI 196
Query: 154 KEIDELS---------------------NGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
+++ E + + AM D+ L+ L +
Sbjct: 197 RKMHERAMVNRQTLMIMIKRYAAAHDARKAIKTFHAMDKFKLAADSDDFLCLLCALCRNM 256
Query: 193 SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM-KEMFQHGFSPDGVSYT 251
V A ++ K C L ++ F+V+++GWC Y K + +EM +PD SYT
Sbjct: 257 FVEEAEELIHFNKKCYPLETKSFNVILYGWCNIFVDVYQVKRLWEEMSNLCITPDAFSYT 316
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
I + + F V EM++KG P++ V++ L K + + EAL ++ K++
Sbjct: 317 TVICCFSKAGKFYDVVRLYDEMKKKGFTPNLKVYNAVIYVLSKERCVKEALNLFNKIREM 376
Query: 312 DCLTDTSFYSSLIFILSKAVR----FLIYNTMISSACVRS------------EEGNALKL 355
+ Y+ LI++L + + + + MI V + EG KL
Sbjct: 377 GFHPNAVTYTYLIYLLCRTWKPEEAYSYLDKMIMEGFVPTIDIYHAFFRFVENEGAICKL 436
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
K+ E+ C P ET+ S++ CC ++ + N M
Sbjct: 437 FDKMFENGCAPTMETYIMSIRRCCSWSDYENAFKLWNDM 475
>gi|326525088|dbj|BAK07814.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 539
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 142/331 (42%), Gaps = 51/331 (15%)
Query: 130 PETYNAMVEALGKSKKFGLMWELVKEIDELS---NGYVSLAAM------------STVMR 174
P Y AM++ L K F L L+ E+ E S + V LA + S + R
Sbjct: 139 PALYAAMIDLLAKHHHFPLARHLLDEMRERSIPVSSQVILAIIRRYVRAGMSPEASELFR 198
Query: 175 RL--------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR 226
R+ D ++ L+ L K+ A +F +K ++ L+H WC+
Sbjct: 199 RMEEYGAGVPDPAVLASLLGALSKKRLAGEAQALFDSYKSVFPPDVVLYTTLVHAWCRAG 258
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
D A++ EM Q G P+ +YT I+ R + L +M E GC P+ T
Sbjct: 259 CLDKAEQVFAEMQQAGIMPNVYTYTSVIDAMYRAGQVPRAQELLCQMMETGCPPNTATFN 318
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI--------LSKAVRFLIYNT 338
+M A KA + + L+V+ +M+ C D Y+ L+ L A++ L
Sbjct: 319 AIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQSNLDAAMKVLA--K 376
Query: 339 MISSACVRS------------EEGN---ALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
MI+ C+ GN A +L ++++E CKP+ T+ +K+ +K
Sbjct: 377 MIAKGCIPDCHTFNPMLKLVLGTGNVEAARRLYERMQELQCKPNVVTYNLLMKLFNKEKS 436
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
M +VL + ++M ++G+ P +T+ L E
Sbjct: 437 MD---MVLRIKKDMDAQGVEPNVNTYGALIE 464
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM- 273
+++L+ + K + D + K+M G P+ +Y IE +C ++R+ TL+EM
Sbjct: 424 YNLLMKLFNKEKSMDMVLRIKKDMDAQGVEPNVNTYGALIESFCGRGNWRRAHATLREMV 483
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+EK KP+ +V+ L KA Q+ + ++ E M
Sbjct: 484 EEKSLKPTKPVYDMVLMLLRKAGQLRKHEELVELM 518
>gi|357442157|ref|XP_003591356.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480404|gb|AES61607.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 158/388 (40%), Gaps = 59/388 (15%)
Query: 44 SWLKFFDTQSPDED----FVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILR 99
S L+ T +P++D + I + S E+LK QS S+ + +D+V + +R
Sbjct: 14 SILRRLSTFNPNDDVHKVYTILTTTSSPETLK---QSLKSTQIFLSNEL--IDQVLKRVR 68
Query: 100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDEL 159
+ +P++ +E F + + G+ HT + + M+ LG+S+ F +WEL+ E
Sbjct: 69 FGHANPNQTLE-----FFRYTGRRKGFYHTAYSLDTMLYILGRSRMFDHVWELLIEARRK 123
Query: 160 SNGYVSLAAMSTVMRRL-----------------------DTRAMSVLMDTLVKRNSVAH 196
++ + V+ R+ + L+ TL + S+
Sbjct: 124 DQNVITPRTVMVVLGRVAKVCSVRQTVETFRKFKKIVPDYGVNCFNALLRTLCQEKSMTD 183
Query: 197 AYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256
A V+ K + Q F++L+ GW ++ MKEM G PD V+Y ++
Sbjct: 184 ARNVYHSLKHNFRPNLQTFNILLSGWKNVEDAELFVNEMKEM---GVEPDVVTYNSLVDV 240
Query: 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316
YC+ ++ K EM+EK P VIT T V+ L Q +A V ++MK D
Sbjct: 241 YCKGREIEKAYKVFDEMREKDLSPDVITYTSVIGGLGLVGQPDKARDVLKEMKEYGVYPD 300
Query: 317 TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
YN I + C+ G A +L ++ P+ T+ +
Sbjct: 301 VP----------------AYNAAIRNYCIAKRLGIAFELVDEMVNKGLSPNATTYNLFFR 344
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ ++ NL + M+ +G +P
Sbjct: 345 VFYWSNDLQSSW---NLYKRMMGEGCLP 369
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D + L+D K + AYKVF ++ KD +S + +I G + D A+
Sbjct: 230 DVVTYNSLVDVYCKGREIEKAYKVFDEMREKD-LSPDVITYTSVIGGLGLVGQPDKARDV 288
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+KEM ++G PD +Y I +YC K + EM KG P+ T +
Sbjct: 289 LKEMKEYGVYPDVPAYNAAIRNYCIAKRLGIAFELVDEMVNKGLSPNATTYNLFFRVFYW 348
Query: 295 AKQIYEALKVYEKMKSDDCLTDT 317
+ + + +Y++M + CL T
Sbjct: 349 SNDLQSSWNLYKRMMGEGCLPYT 371
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 44/94 (46%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ I +C ++ A + + EM G SP+ +Y F + D + K M
Sbjct: 304 YNAAIRNYCIAKRLGIAFELVDEMVNKGLSPNATTYNLFFRVFYWSNDLQSSWNLYKRMM 363
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+GC P +C ++ ++ +++ AL+++ +M
Sbjct: 364 GEGCLPYTQSCMFLIRLFKRHEKMEMALQLWGEM 397
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 141/331 (42%), Gaps = 46/331 (13%)
Query: 113 KCFCFTWAKTQTGYMHTPETYNAMVEALGKSKK-------FGLMWELVKEI--------- 156
KCF FTWA Q GY HT TY M++ L +++ MW+ I
Sbjct: 166 KCF-FTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLL 224
Query: 157 ------DELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-IS 209
+ +S M + T + +++ LVK A VF K I
Sbjct: 225 RTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQ 284
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+Q F + +H + ++ + D A + ++EM + G P ++T I+ + + +
Sbjct: 285 PDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKF 344
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
M+ C P+V+T T +++ L KA ++ EA +V+ +MK ++C D Y++LI L K
Sbjct: 345 FNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGK 404
Query: 330 AV--------------RFLI-----YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
A R L+ YN MIS + A +L ++E PD T
Sbjct: 405 AGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFT 464
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
+ + + +M VL +++EM+ KG
Sbjct: 465 YNTLIDVLGKGGQMDK---VLAIIKEMVEKG 492
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 115/263 (43%), Gaps = 23/263 (8%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ +LVK + A ++F + ++ + + +++++++G K+ + D A K + M
Sbjct: 674 LLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQN 733
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
PD +YT ++ + + +M E+G +P V+ T +M L K ++ AL
Sbjct: 734 ILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHAL 793
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSA 343
++ M C+ D YSSLI L K R +Y+++I S
Sbjct: 794 IIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSF 853
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
+ AL+L ++++ C P+ T+ L R+ + L+ EM G V
Sbjct: 854 GKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLN---VAEKLLEEMEKVGCV 910
Query: 404 PQESTHKMLAEELEKKSLGNAKE 426
P T+ +L + + K + + E
Sbjct: 911 PDLVTYNILIDGVGKMGMVDEAE 933
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 84/372 (22%), Positives = 152/372 (40%), Gaps = 59/372 (15%)
Query: 112 LKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMST 171
+ C F K + G + TYN M+ LGK+ + W+L ++ E ++ + T
Sbjct: 410 MACGLFKEMKDR-GLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQG----AVPDVFT 464
Query: 172 VMRRLDTRAMSVLMDT---------------LVKRNSVAHAYKVF-----------LKFK 205
+D MD ++ R+S A L FK
Sbjct: 465 YNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFK 524
Query: 206 DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
SL ++ L+ + D A K ++ M +H P V+YT ++ + +
Sbjct: 525 ---SLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDE 581
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
L+EM+++GC+PSV+T + +M + K Q E+L ++++M C+ D S YS +I
Sbjct: 582 AVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVIN 641
Query: 326 ILSK-----------------AVRFLI--YNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
L K + L+ Y T++SS + AL++ +++E S P
Sbjct: 642 CLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVP 701
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
D + + R+ + L+ M ++ I+P T+ L + L K G +E
Sbjct: 702 DTFVYNIMVNGLVKSNRVDE---ACKLVDSMKNQNILPDLFTYTSLLDGLGKS--GRLEE 756
Query: 427 RIDELLTHATEQ 438
+ + T TE+
Sbjct: 757 AFN-MFTKMTEE 767
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 116/289 (40%), Gaps = 54/289 (18%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+VL+D LVK ++ A K F K+ S + + L++G K + + A + EM +
Sbjct: 326 TVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKE 385
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
+ SPD ++Y I+ + + KEM+++G P++ T I++ L KA + E
Sbjct: 386 NNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPE 445
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--------------------------- 333
A +++ +K + D Y++LI +L K +
Sbjct: 446 AWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGH 505
Query: 334 -----------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ YNT++S+ A+KL + +++ C P T
Sbjct: 506 EGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVT 565
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
+ + R+ + ++L+REM +G P T+ L K+
Sbjct: 566 YTTLVDGLGKAGRLDE---AVSLLREMEKQGCEPSVVTYSSLMASFYKR 611
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 105/220 (47%), Gaps = 20/220 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY++++++LGK + V+E +S V S L+D+ K+
Sbjct: 810 TYSSLIDSLGKEGR-------VEEAYYFFENSISKGCTPNV------GVYSSLIDSFGKK 856
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
V A ++F ++ + C + ++ L+ G K + + A+K ++EM + G PD V+
Sbjct: 857 GMVDRALELFEEMQRRQCPP-NIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVT 915
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y I+ + + + K M+EKG P VIT T ++ +L K ++ EA ++++ M+
Sbjct: 916 YNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSME 975
Query: 310 SDDCLTDTSFYSSLIFILSKAVRF----LIYNTMISSACV 345
+ Y+ LI IL +A + +I++ M C+
Sbjct: 976 EEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCM 1015
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++LI G K D A+ K M + G PD +++T IE + + M+
Sbjct: 916 YNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSME 975
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS 328
E+G PSV+T +++ L +A +++EA ++ +MK C+ D + ILS
Sbjct: 976 EEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIMKRILS 1029
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/344 (21%), Positives = 137/344 (39%), Gaps = 45/344 (13%)
Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEIDE-------------LSNGYV------SLAAM 169
T TY +V+ LGK+ + L++E+++ +++ Y SL+
Sbjct: 562 TVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLF 621
Query: 170 STVMRR---LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKT 225
++R+ D S++++ L K + V A VF + K+ + + L+ K
Sbjct: 622 DEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKD 681
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
K D+A + E+ + PD Y + + + + M+ + P + T
Sbjct: 682 EKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTY 741
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTMIS 341
T ++ L K+ ++ EA ++ KM + D Y+SL+ +L K + +I+ M
Sbjct: 742 TSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAK 801
Query: 342 SACV-----RSEEGNALKLRQKIEE----------DSCKPDCETHARSLKMCCHKKRMKD 386
CV S ++L ++EE C P+ ++ SL KK M D
Sbjct: 802 KRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYS-SLIDSFGKKGMVD 860
Query: 387 GMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDE 430
L L EM + P T+ L L K N E++ E
Sbjct: 861 --RALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLE 902
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 14/173 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K+ + + +L++E++++ G V D ++L+D + K
Sbjct: 880 TYNNLLSGLAKAGRLNVAEKLLEEMEKV--GCVP-----------DLVTYNILIDGVGKM 926
Query: 192 NSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A F + K+ + I F LI K K A + M + G++P V+Y
Sbjct: 927 GMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTY 986
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
I+ R + EM+ KGC P IT I+ L +Q + AL+
Sbjct: 987 NVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIMKRILSVREQQFHALE 1039
>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
Length = 746
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 136/294 (46%), Gaps = 40/294 (13%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP+ TYN +++ L K G +L+KE++ STV + ++D
Sbjct: 427 TPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAG------CPRSTV-------TYNTIID 473
Query: 187 TLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L K+ + A +VF + IS ++ F+ LI G CK ++ D A + + +M G P
Sbjct: 474 GLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQP 533
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
+ ++Y + HYC++ D +K L+ M G + V+T +++ L KA + ALK+
Sbjct: 534 NNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLL 593
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFL--IYNTMISSACVRSEEGNALKLRQKIEEDS 363
M+ K +R YN +I S R+ +A+ L +++ E
Sbjct: 594 RGMR------------------IKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVG 635
Query: 364 CKPDCETHARSLK-MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
PD T+ + +C +++ + + EM+ KG +P+ S+ +MLAE L
Sbjct: 636 EPPDAFTYKIVFRGLCRGGGSIRE---AFDFLLEMVDKGFIPEFSSFRMLAEGL 686
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 115/267 (43%), Gaps = 22/267 (8%)
Query: 166 LAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCK 224
L MS+ D + LM V+ S+ A +V + + +++ +VLI+G+CK
Sbjct: 208 LEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCK 267
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
+ + A +++ +GF PD ++Y F+ C+ + M ++G P V T
Sbjct: 268 LGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFT 327
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC 344
IV++ L K Q+ EA + +M CL D + +NT+I + C
Sbjct: 328 YNIVVNCLCKNGQLEEAKGILNQMVERGCLPDIT----------------TFNTLIVALC 371
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ AL L +++ PD T + C ++ D L L L EM S G P
Sbjct: 372 SGNRLEEALDLARQVTLKGLSPDVYTFNILINALC---KVGDPQLALRLFEEMKSSGCTP 428
Query: 405 QESTHKMLAEELEKKSLGNAKERIDEL 431
E T+ L + L SLG + +D L
Sbjct: 429 DEVTYNTLIDNL--CSLGKLGKALDLL 453
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 22/225 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F++LI+ CK A + +EM G +PD V+Y I++ C K LKEM+
Sbjct: 398 FNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEME 457
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
GC S +T ++ L K +I EA +V+++M + +++LI L K R
Sbjct: 458 SAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRID 517
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ YN++++ C + + A + Q + + + D T+ +
Sbjct: 518 DANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLI 577
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C R + + L L+R M KG+ + + + L +++
Sbjct: 578 NGLCKAGRTQ---VALKLLRGMRIKGMRATPKAYNPVIQSLFRRN 619
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 127/337 (37%), Gaps = 46/337 (13%)
Query: 100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFG-----LMWELVK 154
+ P PD + L A + + PE Y ++ LG + L+ E+ +
Sbjct: 52 REQPDPDAALRMLNA-----ALAREDFAPGPEVYEEIIRKLGAAAGAADLMKVLVTEMRR 106
Query: 155 EIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
E ++ G V S ++L A+ ++++ L + V+ + +
Sbjct: 107 EGHQVRVGVVHSFLESYARQQLFVDAVDLVLNQLDPLFGIQADTVVY----------NHL 156
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+VL+ G K + EM + G PD V++ ++ CR R L+EM
Sbjct: 157 LNVLVEG----SKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS 212
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
G P T T +M + I AL+V +M C + LI K R
Sbjct: 213 SSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVE 272
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ YNT ++ C G+ALK+ + ++ PD T+ +
Sbjct: 273 DALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVV 332
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C ++++ +LN +M+ +G +P +T L
Sbjct: 333 NCLCKNGQLEEAKGILN---QMVERGCLPDITTFNTL 366
>gi|296081511|emb|CBI20034.3| unnamed protein product [Vitis vinifera]
Length = 596
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 143/325 (44%), Gaps = 46/325 (14%)
Query: 111 ALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMS 170
A + FC WA + G+ H TYNAM+ LG++++F M ++ E+ E G +++ S
Sbjct: 207 AFRFFC--WAGQKAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGE--KGLLTMETFS 262
Query: 171 T-------------------VMRRLDTRA----MSVLMDTLVKRNSVAHAYKVFLKFKDC 207
+M+R + A ++ L+D L + A +F K +D
Sbjct: 263 IAIKAFAAAKERKKAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDR 322
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ + + + VL++GWC+ + A + EM GF PD +++ +E + K
Sbjct: 323 FTPNLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAI 382
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ M+ KG P+V T TI++ L K ++ EA++ +++M C D + Y+ LI
Sbjct: 383 KLFEVMKAKGPSPNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGF 442
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+ L ++++E C D T+ +K+ +++ D
Sbjct: 443 GNQKKM----------------DKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDD- 485
Query: 388 MLVLNLMREMLSKGIVPQESTHKML 412
+ + ++M+ GI T+ M+
Sbjct: 486 --AVRIYKKMIQNGIQSTLHTYNMM 508
>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
Length = 399
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 18/223 (8%)
Query: 125 GYMHTP--ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
G TP +TYNA++ KS + + ++E+ + A S DT S
Sbjct: 149 GMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQR-------AGCSP-----DTFTYS 196
Query: 183 VLMDTLVKRNSVAHAYKVF---LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+L++ L K +++ A ++ + KDC + S F+ L+ G+CK + D A++ + M
Sbjct: 197 ILINGLCKSSNLRKADELLQEMIGRKDCCA-SVVAFNTLVDGYCKAQDLDRARELLSSML 255
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+HG +PD V+Y+ I+ CR D K L++M +GCKP V+T T+++ L KA ++
Sbjct: 256 EHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMV 315
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISS 342
EA ++ ++M D C + YS + L K + + N +++S
Sbjct: 316 EACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTS 358
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 127/318 (39%), Gaps = 41/318 (12%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI------------DELSNGYVSLAAMS 170
Q G TP YN V AL KS K E+VK + + L G +
Sbjct: 47 QPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLD 106
Query: 171 TVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL--------SSQIFDVLIHGW 222
+ LD S LV N++ + + + + + +Q ++ +IHG+
Sbjct: 107 EAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGF 166
Query: 223 CKTRKSDYAQKAMKEMFQH-GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM-QEKGCKP 280
CK+ + D A ++EM Q G SPD +Y+ I C+ + RK D L+EM K C
Sbjct: 167 CKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCA 226
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340
SV+ ++ KA+ + A ++ M C D + Y+T+I
Sbjct: 227 SVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDV----------------VTYSTII 270
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
C + L +K+ CKPD T+ + C +M + L++ ML
Sbjct: 271 DGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVE---ACRLVKRMLED 327
Query: 401 GIVPQESTHKMLAEELEK 418
G P T+ ++ + L K
Sbjct: 328 GCTPNAVTYSLVFDGLCK 345
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 93/218 (42%), Gaps = 23/218 (10%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQH-GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
VL+ C + A ++EM Q G +P Y F+ C+ + +K M++
Sbjct: 23 VLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKD 82
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335
CKP V+T ++ L KA ++ EA +V ++M+ + F ++L+
Sbjct: 83 GACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMER------SGFAANLV----------T 126
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
YNT+I+ G A+ + Q + + PD +T+ + C + L M+
Sbjct: 127 YNTLINGLSSAGRSGEAVLVMQGM---TTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMK 183
Query: 396 EMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELL 432
+ G P T+ +L L K S L A E + E++
Sbjct: 184 Q--RAGCSPDTFTYSILINGLCKSSNLRKADELLQEMI 219
>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
Length = 742
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 145/317 (45%), Gaps = 40/317 (12%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP+ TYN +++ L K G +L+K+++ ST R T + ++D
Sbjct: 423 TPDEVTYNTLIDNLCSLGKLGKALDLLKDME------------STGCPR-STITYNTIID 469
Query: 187 TLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L K+ + A +VF + IS ++ F+ LI G CK +K D A + + +M G P
Sbjct: 470 GLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQP 529
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
+ ++Y + HYC++ D +K L+ M G + V+T +++ L KA + ALKV
Sbjct: 530 NNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVL 589
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFL--IYNTMISSACVRSEEGNALKLRQKIEEDS 363
M+ K +R YN ++ S R+ +AL L +++ E
Sbjct: 590 RGMR------------------IKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVG 631
Query: 364 CKPDCETHARSLK-MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLG 422
PD T+ + +C +K+ + M EM+ KG +P+ S+ +MLAE L +
Sbjct: 632 EPPDALTYKIVFRGLCRGGGPIKE---AFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMD 688
Query: 423 NAKERIDELLTHATEQR 439
+ R E++ + R
Sbjct: 689 DYFIRAIEIIMEKVDLR 705
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 119/275 (43%), Gaps = 22/275 (8%)
Query: 158 ELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FD 216
++ + L MS+ D + LM V+ S+ A +V + + ++++ +
Sbjct: 196 QVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVN 255
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
VLI+G+CK + + A +++ GF PD ++Y F+ C+ + M ++
Sbjct: 256 VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQE 315
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336
G P V T IV++ L K Q+ EA + +M CL D + +
Sbjct: 316 GHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDIT----------------TF 359
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT+I++ C + AL L +++ PD T + C ++ D L L L E
Sbjct: 360 NTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALC---KVGDPHLALRLFEE 416
Query: 397 MLSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431
M + G P E T+ L + L SLG + +D L
Sbjct: 417 MKNSGCTPDEVTYNTLIDNL--CSLGKLGKALDLL 449
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/336 (21%), Positives = 124/336 (36%), Gaps = 37/336 (11%)
Query: 100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDEL 159
+ P PD + L A + + PE Y ++ LG LM LV E+
Sbjct: 49 REQPDPDAALRMLNA-----ALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRRE 103
Query: 160 SNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLI 219
+ + V LD+ L D V + + + + + + + + +VL+
Sbjct: 104 GHQ----VKLGVVHSFLDSYEGQQLFDDAV--DLILNQLQPLFGIQADTVVYNHLLNVLV 157
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
G K + EM G PD V++ ++ CR R L+EM +G
Sbjct: 158 EG----SKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVA 213
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------ 333
P T T +M + I AL+V +M C + LI K R
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 273
Query: 334 -------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
+ YNT ++ C G+ALK+ + ++ PD T+ + C
Sbjct: 274 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++++ +LN +M+ +G +P +T L L
Sbjct: 334 NGQLEEAKGILN---QMVDRGCLPDITTFNTLIAAL 366
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 22/225 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F++LI+ CK A + +EM G +PD V+Y I++ C K LK+M+
Sbjct: 394 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 453
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
GC S IT ++ L K +I EA +V+++M + +++LI L K +
Sbjct: 454 STGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKID 513
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ YN++++ C + + A + + + + + D T+ +
Sbjct: 514 DAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLI 573
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C R + + L ++R M KG+ P + + + L +++
Sbjct: 574 NGLCKAGRTQ---VALKVLRGMRIKGMRPTPKAYNPVLQSLFRRN 615
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 71/363 (19%), Positives = 137/363 (37%), Gaps = 39/363 (10%)
Query: 53 SPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVS-EILRKRYPSPDKVVEA 111
+PDE + +VE + R+ + L + KV+ +L Y +V +A
Sbjct: 213 APDETTFTTLMQGFVEEGSIEAALRVKARML--EMGCSATKVTVNVLINGYCKLGRVEDA 270
Query: 112 LKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMST 171
L + + G+ TYN V L ++ D + + + M
Sbjct: 271 LG---YIQQEIADGFEPDQITYNTFVNGLCQN-------------DHVGHALKVMDVMVQ 314
Query: 172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKSDY 230
D +++++ L K + A + + D L F+ LI C + +
Sbjct: 315 EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE 374
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A +++ G SPD ++ I C+ D +EM+ GC P +T ++
Sbjct: 375 ALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLID 434
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------------- 333
L ++ +AL + + M+S C T Y+++I L K +R
Sbjct: 435 NLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR 494
Query: 334 --LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+ +NT+I C + +A +L ++ + +P+ T+ L C + +K +L
Sbjct: 495 NAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADIL 554
Query: 392 NLM 394
M
Sbjct: 555 ETM 557
>gi|225447826|ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Vitis vinifera]
Length = 679
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 143/325 (44%), Gaps = 46/325 (14%)
Query: 111 ALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMS 170
A + FC WA + G+ H TYNAM+ LG++++F M ++ E+ E G +++ S
Sbjct: 252 AFRFFC--WAGQKAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGE--KGLLTMETFS 307
Query: 171 T-------------------VMRRLDTRA----MSVLMDTLVKRNSVAHAYKVFLKFKDC 207
+M+R + A ++ L+D L + A +F K +D
Sbjct: 308 IAIKAFAAAKERKKAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDR 367
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ + + + VL++GWC+ + A + EM GF PD +++ +E + K
Sbjct: 368 FTPNLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAI 427
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ M+ KG P+V T TI++ L K ++ EA++ +++M C D + Y+ LI
Sbjct: 428 KLFEVMKAKGPSPNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGF 487
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+ L ++++E C D T+ +K+ +++ D
Sbjct: 488 GNQKKM----------------DKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDD- 530
Query: 388 MLVLNLMREMLSKGIVPQESTHKML 412
+ + ++M+ GI T+ M+
Sbjct: 531 --AVRIYKKMIQNGIQSTLHTYNMM 553
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 32/208 (15%)
Query: 88 ETDVDKVSEILRKRYPSPD---------------KVVEALKCFCFTWAKTQTGYMHTPET 132
++D K+ E+++ + PSP+ K+ EA++ F +G
Sbjct: 423 KSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMQEAVEYFD---EMVDSGCQPDAAV 479
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
Y ++ G KK ++ L+KE+ E D R + L+ + R
Sbjct: 480 YTCLITGFGNQKKMDKVYALLKEMKEKGC-------------PADGRTYNALIKLMTNRQ 526
Query: 193 SVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
A +++ K ++ I + +++++ + TR + +EM + G PD SY
Sbjct: 527 MPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTRNYEMGCAVWEEMGRKGCCPDDNSYI 586
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCK 279
FI R + L+EM EKG K
Sbjct: 587 VFIGGLIRHGRSEEACRYLEEMIEKGMK 614
>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
Length = 399
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 18/223 (8%)
Query: 125 GYMHTP--ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
G TP +TYNA++ KS + + ++E+ + A S DT S
Sbjct: 149 GMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQR-------AGCSP-----DTFTYS 196
Query: 183 VLMDTLVKRNSVAHAYKVF---LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+L++ L K +++ A ++ + KDC + S F+ L+ G+CK + D A++ + M
Sbjct: 197 ILINGLCKSSNLRKADELLQEMIGRKDCCA-SVVAFNTLVDGYCKAQDLDRARELLSSML 255
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+HG +PD V+Y+ I+ CR D K L++M +GCKP V+T T+++ L KA ++
Sbjct: 256 EHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMV 315
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISS 342
EA ++ ++M D C + YS + L K + + N +++S
Sbjct: 316 EACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTS 358
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 127/318 (39%), Gaps = 41/318 (12%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI------------DELSNGYVSLAAMS 170
Q G TP YN V AL KS K E+VK + + L G +
Sbjct: 47 QPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLD 106
Query: 171 TVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL--------SSQIFDVLIHGW 222
+ LD S LV N++ + + + + + +Q ++ +IHG+
Sbjct: 107 EAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGF 166
Query: 223 CKTRKSDYAQKAMKEMFQH-GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM-QEKGCKP 280
CK+ + D A ++EM Q G SPD +Y+ I C+ + RK D L+EM K C
Sbjct: 167 CKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCA 226
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340
SV+ ++ KA+ + A ++ M C D + Y+T+I
Sbjct: 227 SVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDV----------------VTYSTII 270
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
C + L +K+ CKPD T+ + C +M + L++ ML
Sbjct: 271 DGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVE---ACRLVKRMLED 327
Query: 401 GIVPQESTHKMLAEELEK 418
G P T+ ++ + L K
Sbjct: 328 GCTPNAVTYSLVFDGLCK 345
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 93/218 (42%), Gaps = 23/218 (10%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQH-GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
VL+ C + A ++EM Q G +P Y F+ C+ + +K M++
Sbjct: 23 VLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKD 82
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335
CKP V+T ++ L KA ++ EA +V ++M+ + F ++L+
Sbjct: 83 GACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMER------SGFAANLV----------T 126
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
YNT+I+ G A+ + Q + + PD +T+ + C + L M+
Sbjct: 127 YNTLINGLSSAGRSGEAVLVMQGM---TTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMK 183
Query: 396 EMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELL 432
+ G P T+ +L L K S L A E + E++
Sbjct: 184 Q--RAGCSPDTFTYSILINGLCKSSNLRKADELLQEMI 219
>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
Group]
gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
Length = 742
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 145/317 (45%), Gaps = 40/317 (12%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP+ TYN +++ L K G +L+K+++ ST R T + ++D
Sbjct: 423 TPDEVTYNTLIDNLCSLGKLGKALDLLKDME------------STGCPR-STITYNTIID 469
Query: 187 TLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L K+ + A +VF + IS ++ F+ LI G CK +K D A + + +M G P
Sbjct: 470 GLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQP 529
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
+ ++Y + HYC++ D +K L+ M G + V+T +++ L KA + ALKV
Sbjct: 530 NNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVL 589
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFL--IYNTMISSACVRSEEGNALKLRQKIEEDS 363
M+ K +R YN ++ S R+ +AL L +++ E
Sbjct: 590 RGMR------------------IKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVG 631
Query: 364 CKPDCETHARSLK-MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLG 422
PD T+ + +C +K+ + M EM+ KG +P+ S+ +MLAE L +
Sbjct: 632 EPPDALTYKIVFRGLCRGGGPIKE---AFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMD 688
Query: 423 NAKERIDELLTHATEQR 439
+ R E++ + R
Sbjct: 689 DYFIRAIEIIMEKVDLR 705
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 22/256 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D + LM V+ S+ A +V + + ++++ +VLI+G+CK + + A +
Sbjct: 215 DETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYI 274
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++ GF PD ++Y F+ C+ + M ++G P V T IV++ L K
Sbjct: 275 QQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKN 334
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
Q+ EA + +M CL D + +NT+I++ C + AL L
Sbjct: 335 GQLEEAKGILNQMVDRGCLPDIT----------------TFNTLIAALCTGNRLEEALDL 378
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+++ PD T + C ++ D L L L EM + G P E T+ L +
Sbjct: 379 ARQVTVKGVSPDVYTFNILINALC---KVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 435
Query: 416 LEKKSLGNAKERIDEL 431
L SLG + +D L
Sbjct: 436 L--CSLGKLGKALDLL 449
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/336 (21%), Positives = 124/336 (36%), Gaps = 37/336 (11%)
Query: 100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDEL 159
+ P PD + L A + + PE Y ++ LG LM LV E+
Sbjct: 49 REQPDPDAALRMLNA-----ALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRRE 103
Query: 160 SNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLI 219
+ + V LD+ L D V + + + + + + + + +VL+
Sbjct: 104 GHQ----VKLGVVHSFLDSYEGQQLFDDAV--DLILNQLQPLFGIQADTVVYNHLLNVLV 157
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
G K + EM G PD V++ ++ CR R L+EM +G
Sbjct: 158 EG----SKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVA 213
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------ 333
P T T +M + I AL+V +M C + LI K R
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 273
Query: 334 -------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
+ YNT ++ C G+ALK+ + ++ PD T+ + C
Sbjct: 274 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++++ +LN +M+ +G +P +T L L
Sbjct: 334 NGQLEEAKGILN---QMVDRGCLPDITTFNTLIAAL 366
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 22/225 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F++LI+ CK A + +EM G +PD V+Y I++ C K LK+M+
Sbjct: 394 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 453
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
GC S IT ++ L K +I EA +V+++M + +++LI L K +
Sbjct: 454 STGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKID 513
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ YN++++ C + + A + + + + + D T+ +
Sbjct: 514 DAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLI 573
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C R + + L ++R M KG+ P + + + L +++
Sbjct: 574 NGLCKAGRTQ---VALKVLRGMRIKGMRPTPKAYNPVLQSLFRRN 615
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 71/363 (19%), Positives = 137/363 (37%), Gaps = 39/363 (10%)
Query: 53 SPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVS-EILRKRYPSPDKVVEA 111
+PDE + +VE + R+ + L + KV+ +L Y +V +A
Sbjct: 213 APDETTFTTLMQGFVEEGSIEAALRVKARML--EMGCSATKVTVNVLINGYCKLGRVEDA 270
Query: 112 LKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMST 171
L + + G+ TYN V L ++ D + + + M
Sbjct: 271 LG---YIQQEIADGFEPDQITYNTFVNGLCQN-------------DHVGHALKVMDVMVQ 314
Query: 172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKSDY 230
D +++++ L K + A + + D L F+ LI C + +
Sbjct: 315 EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE 374
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A +++ G SPD ++ I C+ D +EM+ GC P +T ++
Sbjct: 375 ALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLID 434
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------------- 333
L ++ +AL + + M+S C T Y+++I L K +R
Sbjct: 435 NLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR 494
Query: 334 --LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+ +NT+I C + +A +L ++ + +P+ T+ L C + +K +L
Sbjct: 495 NAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADIL 554
Query: 392 NLM 394
M
Sbjct: 555 ETM 557
>gi|122236160|sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g13420, mitochondrial; Flags: Precursor
gi|110738270|dbj|BAF01064.1| hypothetical protein [Arabidopsis thaliana]
Length = 509
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 125/304 (41%), Gaps = 49/304 (16%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM--- 173
F + ++ TP ++N +++ LG+ ++F ++ +L+ E+D+ S + +
Sbjct: 92 FQYLRSLPSPSTTPTSFNLIIDILGRVRQFDVVRQLIVEMDQTSPETFLILVKRLIAAGL 151
Query: 174 -----------------RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD 216
RR L+DTL K A VF + K+ +++
Sbjct: 152 TRQAVRAFDDAPCFLENRRFRLVEFGFLLDTLCKYGYTKMAVGVFNERKEEFGSDEKVYT 211
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----------EKDFRKV 266
+LI GWCK R+ D A+K + EM + G P+ V+Y + CR E++ R
Sbjct: 212 ILIAGWCKLRRIDMAEKFLVEMIESGIEPNVVTYNVLLNGICRTASLHPEERFERNVRNA 271
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
+ EM+++G +P V + +IV+H +A + L + MK+ Y+S++
Sbjct: 272 EKVFDEMRQRGIEPDVTSFSIVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKC 331
Query: 327 LSKAVRFL-------------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
L R YN R + A+ L +K++ CKP
Sbjct: 332 LCSCGRLEEAEELLETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPS 391
Query: 368 CETH 371
+T+
Sbjct: 392 TQTY 395
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 56/117 (47%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS + + + ++ C + + A++ ++ M + G SP +Y CF + Y KD
Sbjct: 318 ISPTIETYTSVVKCLCSCGRLEEAEELLETMVESGISPSSATYNCFFKEYKGRKDANGAM 377
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
++M+ CKPS T +++ ++ ++++ +K+ + D Y+SL+
Sbjct: 378 NLYRKMKNGLCKPSTQTYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLV 434
>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
Length = 547
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 150/340 (44%), Gaps = 49/340 (14%)
Query: 104 SPDKVVEALKCFC---------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVK 154
SP+ V E LK F WA+ Q G+ +T E ++ ++EALGK K+F L+W LV+
Sbjct: 126 SPELVAEVLKNLSNAGMLALAFFRWAERQEGFSYTAEGFHNLIEALGKIKQFRLVWSLVE 185
Query: 155 EIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
+ G +S ++RR + V A + F K L +++
Sbjct: 186 TMR--CRGLLSKDTFKLIVRRY------------ARARKVKEAVETFEKM-SIFGLKTEL 230
Query: 215 FDV--LIHGWCKTRKSDYAQKAMKEMFQHG-FSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
D LI K+++ AQ KEM + G F PD +YT +E + EKD V +
Sbjct: 231 SDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQ 290
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
EM + G +P V+ +++ A K+ + EA+KV+ +M++ C+ Y LI L
Sbjct: 291 EMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEE 350
Query: 332 RF---LIY----------------NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
R L Y N ++ + C S+ +A K+ ++ + P+ T+
Sbjct: 351 RLDEALKYFEHYKKSGFPMEVPTCNAVVGAYCRASKFQHAFKMVDEMRKCKVGPNSRTYD 410
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
L ++ ++ N+ + M G PQ +T+ M+
Sbjct: 411 VILHYLIKSQKFEE---AYNIFQRMGIDGCEPQLNTYTMM 447
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 132/346 (38%), Gaps = 48/346 (13%)
Query: 96 EILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE 155
+++ +RY KV EA++ F + G YN +++ L KSK+ + KE
Sbjct: 199 KLIVRRYARARKVKEAVETF---EKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKE 255
Query: 156 IDELSNGYVSLAAMSTVMR-----------------------RLDTRAMSVLMDTLVKRN 192
+ L + +M R D A +L+ K
Sbjct: 256 MKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSG 315
Query: 193 SVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
A KVF ++ C+ S ++ +LI+G + D A K + + GF + +
Sbjct: 316 KCDEAIKVFYEMEASGCMP-SPHVYCMLINGLGSEERLDEALKYFEHYKKSGFPMEVPTC 374
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ YCR F+ + EM++ P+ T +++H L K+++ EA ++++M
Sbjct: 375 NAVVGAYCRASKFQHAFKMVDEMRKCKVGPNSRTYDVILHYLIKSQKFEEAYNIFQRMGI 434
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
D C + Y M+ C ALK+ +++ E P
Sbjct: 435 DGCEPQLN----------------TYTMMVGMFCSNGRVDMALKVWKQMGEKGVLPCMHM 478
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ + C + R+++ + +EML KGI P L E L
Sbjct: 479 FSALINGLCFENRLEEACVYF---QEMLDKGIRPPGQLFSNLKEAL 521
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 20/217 (9%)
Query: 104 SPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGY 163
S +++ EALK F ++G+ T NA+V A ++ KF +++V E+ + G
Sbjct: 348 SEERLDEALKYF---EHYKKSGFPMEVPTCNAVVGAYCRASKFQHAFKMVDEMRKCKVG- 403
Query: 164 VSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGW 222
++R V++ L+K AY +F + D + +++ +
Sbjct: 404 ------------PNSRTYDVILHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTYTMMVGMF 451
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
C + D A K K+M + G P ++ I C E + +EM +KG +P
Sbjct: 452 CSNGRVDMALKVWKQMGEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPG 511
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF 319
+ + AL + +I A +V K+ D + T F
Sbjct: 512 QLFSNLKEALVQGGRISLAQEVALKL---DAIRKTPF 545
>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
Length = 570
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 132/312 (42%), Gaps = 50/312 (16%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKE-------------------------IDELSN 161
TP+ TY ++++ LGK K+ ++L KE I + S+
Sbjct: 232 TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASS 291
Query: 162 GYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIH 220
Y ++ + V D +S ++D L K + A ++F + ++ + ++ LIH
Sbjct: 292 VYKTMTSQGCVP---DVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIH 348
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G CK RK D A + + +M + +PD ++Y I+ C+ D EM E GCKP
Sbjct: 349 GLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKP 408
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340
V T I++ KA A V++ M S C + + Y T+I
Sbjct: 409 DVYTYNILVSGFCKAGNTDAACGVFDDMSSSHC----------------SPNVVTYGTLI 452
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
S C R + A Q ++E C PD ++ + C +++ G ++ + EM
Sbjct: 453 SGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFD---EMERS 509
Query: 401 GIVPQESTHKML 412
G+ ++ +++
Sbjct: 510 GVANSQTRTRLI 521
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 72/349 (20%), Positives = 148/349 (42%), Gaps = 46/349 (13%)
Query: 100 KRYPSPDKVVEALKCFC---FTW------AKTQTGYMHTPETYNAMVEALGKSKKFGLMW 150
+R S D VV+ +C W + + G+ H+ T NA+++ ++K+
Sbjct: 20 RREISTDAVVKIFQCLKDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAG 79
Query: 151 ELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CI 208
L+K +EL+ ++ D +VL+ A+ V + ++ +
Sbjct: 80 NLLK--NELATTFLP-----------DVETWNVLITGYCLAREPEEAFAVIREMEEDYGV 126
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
+ S + ++++HG CK+ K A + +G + D +YT ++ + K +
Sbjct: 127 APSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVA 186
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS 328
++++ GC P++ T +++ L K ++ EA+ + K+ + C D Y+SLI L
Sbjct: 187 LMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLG 246
Query: 329 K--------------AVRFLIYNTMISSACVRS--EEG---NALKLRQKIEEDSCKPDCE 369
K A+R L+ +T+ +A +R + G A + + + C PD
Sbjct: 247 KEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVV 306
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
T + + C R+ + + + M ++G+ P E + L L K
Sbjct: 307 TLSTMIDGLCKAGRIG---AAVRIFKSMEARGLAPNEVVYSALIHGLCK 352
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 112/257 (43%), Gaps = 23/257 (8%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
+D + ++D L K + A + K + + + ++ L++G CK + + A
Sbjct: 163 IDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDL 222
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
++++ +G +PD V+YT I+ +EK + KEM +G + T ++ L +
Sbjct: 223 LRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQ 282
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LI 335
A +I +A VY+ M S C+ D S++I L KA R ++
Sbjct: 283 AGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVV 342
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
Y+ +I C + AL++ ++++ C PD T+ + C ++ +
Sbjct: 343 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFD--- 399
Query: 396 EMLSKGIVPQESTHKML 412
EML G P T+ +L
Sbjct: 400 EMLEAGCKPDVYTYNIL 416
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 99/217 (45%), Gaps = 24/217 (11%)
Query: 204 FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263
F+ + + + DV + +T++ A +K F PD ++ I YC ++
Sbjct: 55 FQHSVHTGNALLDV----FARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREP 110
Query: 264 RKVDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
+ ++EM+E G PS+ T +V+H L K+ ++ A+ +E ++ C D Y++
Sbjct: 111 EEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTA 170
Query: 323 LIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
++ L+K N I +A+ L +KI + C P T+ L C
Sbjct: 171 IVDWLAK-------NKKIQ---------DAVALMEKITANGCTPTIATYNALLNGLCKMG 214
Query: 383 RMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
R+++ ++L+R+++ G P T+ L + L K+
Sbjct: 215 RLEE---AIDLLRKIVDNGCTPDVVTYTSLIDGLGKE 248
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 82/208 (39%), Gaps = 20/208 (9%)
Query: 129 TPET--YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP+T YN +++ L KS E+ E + D ++L+
Sbjct: 372 TPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGC-------------KPDVYTYNILVS 418
Query: 187 TLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
K + A VF + C S + + LI G CK R+ A + M + G
Sbjct: 419 GFCKAGNTDAACGVFDDMSSSHC-SPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCP 477
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD Y+ ++ C+ EM+ G S ++ H L KA ++ EA+ +
Sbjct: 478 PDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFH-LCKANRVDEAVSL 536
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVR 332
+ ++ + + Y+S+I L K+ +
Sbjct: 537 FNAIRKEG-MPHPYAYNSIISTLIKSAK 563
>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
Length = 650
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 145/317 (45%), Gaps = 40/317 (12%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP+ TYN +++ L K G +L+K+++ ST R T + ++D
Sbjct: 331 TPDEVTYNTLIDNLCSLGKLGKALDLLKDME------------STGCPR-STITYNTIID 377
Query: 187 TLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L K+ + A +VF + IS ++ F+ LI G CK +K D A + + +M G P
Sbjct: 378 GLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQP 437
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
+ ++Y + HYC++ D +K L+ M G + V+T +++ L KA + ALKV
Sbjct: 438 NNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVL 497
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFL--IYNTMISSACVRSEEGNALKLRQKIEEDS 363
M+ K +R YN ++ S R+ +AL L +++ E
Sbjct: 498 RGMR------------------IKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVG 539
Query: 364 CKPDCETHARSLK-MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLG 422
PD T+ + +C +K+ + M EM+ KG +P+ S+ +MLAE L +
Sbjct: 540 EPPDALTYKIVFRGLCRGGGPIKE---AFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMD 596
Query: 423 NAKERIDELLTHATEQR 439
+ R E++ + R
Sbjct: 597 DYFIRAIEIIMEKVDLR 613
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 22/256 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D + LM V+ S+ A +V + + ++++ +VLI+G+CK + + A +
Sbjct: 123 DETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYI 182
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++ GF PD ++Y F+ C+ + M ++G P V T IV++ L K
Sbjct: 183 QQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKN 242
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
Q+ EA + +M CL D + +NT+I++ C + AL L
Sbjct: 243 GQLEEAKGILNQMVDRGCLPDIT----------------TFNTLIAALCTGNRLEEALDL 286
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+++ PD T + C ++ D L L L EM + G P E T+ L +
Sbjct: 287 ARQVTVKGVSPDVYTFNILINALC---KVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 343
Query: 416 LEKKSLGNAKERIDEL 431
L SLG + +D L
Sbjct: 344 L--CSLGKLGKALDLL 357
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 22/225 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F++LI+ CK A + +EM G +PD V+Y I++ C K LK+M+
Sbjct: 302 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 361
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
GC S IT ++ L K +I EA +V+++M + +++LI L K +
Sbjct: 362 STGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKID 421
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ YN++++ C + + A + + + + + D T+ +
Sbjct: 422 DAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLI 481
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C R + + L ++R M KG+ P + + + L +++
Sbjct: 482 NGLCKAGRTQ---VALKVLRGMRIKGMRPTPKAYNPVLQSLFRRN 523
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 89/228 (39%), Gaps = 22/228 (9%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
I + +++ L++ + K + EM G PD V++ ++ CR R
Sbjct: 50 IQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAV 109
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
L+EM +G P T T +M + I AL+V +M C + LI
Sbjct: 110 LMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGY 169
Query: 328 SKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
K R + YNT ++ C G+ALK+ + ++ PD
Sbjct: 170 CKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDV 229
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
T+ + C ++++ +LN +M+ +G +P +T L L
Sbjct: 230 FTYNIVVNCLCKNGQLEEAKGILN---QMVDRGCLPDITTFNTLIAAL 274
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 71/363 (19%), Positives = 137/363 (37%), Gaps = 39/363 (10%)
Query: 53 SPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVS-EILRKRYPSPDKVVEA 111
+PDE + +VE + R+ + L + KV+ +L Y +V +A
Sbjct: 121 APDETTFTTLMQGFVEEGSIEAALRVKARML--EMGCSATKVTVNVLINGYCKLGRVEDA 178
Query: 112 LKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMST 171
L + + G+ TYN V L ++ D + + + M
Sbjct: 179 LG---YIQQEIADGFEPDQITYNTFVNGLCQN-------------DHVGHALKVMDVMVQ 222
Query: 172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKSDY 230
D +++++ L K + A + + D L F+ LI C + +
Sbjct: 223 EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE 282
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A +++ G SPD ++ I C+ D +EM+ GC P +T ++
Sbjct: 283 ALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLID 342
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------------- 333
L ++ +AL + + M+S C T Y+++I L K +R
Sbjct: 343 NLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR 402
Query: 334 --LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+ +NT+I C + +A +L ++ + +P+ T+ L C + +K +L
Sbjct: 403 NAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADIL 462
Query: 392 NLM 394
M
Sbjct: 463 ETM 465
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 19/172 (11%)
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G D V Y + + ++ EM +G KP V+T +M AL +A Q+ A
Sbjct: 49 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 108
Query: 302 LKVYEKMKSDDCLTDTSFYSSLI--FI----LSKAVRF-------------LIYNTMISS 342
+ + E+M S D + +++L+ F+ + A+R + N +I+
Sbjct: 109 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 168
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
C +AL Q+ D +PD T+ + C + + V+++M
Sbjct: 169 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVM 220
>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g74580-like [Cucumis
sativus]
Length = 877
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 139/315 (44%), Gaps = 45/315 (14%)
Query: 119 WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-- 176
+ + G+ H+ YN +V+ L K GL+ + +L M +M
Sbjct: 380 YEAMEKGFKHSIILYNTLVKGLSKQ---GLVLQ-------------ALQLMKDMMEHGCS 423
Query: 177 -DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQK 233
D +++++ L K ++ A + K CI F+ LI G+CK R D A +
Sbjct: 424 PDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIP-DIFTFNTLIDGYCKQRNMDKAIE 482
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
+ M HG +PD ++Y + C+ + V T K M EKGC P++IT I++ +
Sbjct: 483 ILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFC 542
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------------FI-LSKAVRF---- 333
K +++ EA++++++MK+ D +LI F+ + K +F
Sbjct: 543 KDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYST 602
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
I+N MI++ C + A KL K+ C PD T+ + C + L
Sbjct: 603 AIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNID---LAHTF 659
Query: 394 MREMLSKGIVPQEST 408
+ E +SKG+VP +T
Sbjct: 660 LLENISKGLVPSFTT 674
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 147/347 (42%), Gaps = 54/347 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------LSNGYVSL---- 166
F KT+ G+ HT ETY M+E LG KF M +++ E+ + L Y+ +
Sbjct: 27 FNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDY 86
Query: 167 ------AAMSTVMRRLD-------TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
V R+D ++ + +M+ LV+ + A+KV+++ KD I +
Sbjct: 87 GRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKD-IGIYPD 145
Query: 214 IF--DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
++ + + +C T + A + + M G + VSY I + +E + +
Sbjct: 146 VYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFD 205
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK-MKSDDCLTDTSFYSSLIFI---- 326
EM ++G P ++T ++H L K + E+ K++ K MK C + ++ IFI
Sbjct: 206 EMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVC---PNLFTFNIFIQGLC 262
Query: 327 ----LSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
+ +A R L YNT+I C S+ A K+ +P+
Sbjct: 263 RKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEF 322
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
T+ + C M++ +L R+ + KG +P E T+ L L
Sbjct: 323 TYNTIINGFCKAGMMQNADKIL---RDAMFKGFIPDEFTYSSLINGL 366
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 122/280 (43%), Gaps = 24/280 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + L+ L K+ +V + K+F K K + + F++ I G C+ D A + +
Sbjct: 215 DILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLL 274
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ + G +PD +SY I +C+ + + L +M G +P+ T +++ KA
Sbjct: 275 ESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKA 334
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL--------SKAVRF-----------LIY 336
+ A K+ + D YSSLI L + AV + ++Y
Sbjct: 335 GMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILY 394
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT++ + AL+L + + E C PD T+ + C + D +LN +
Sbjct: 395 NTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILN---D 451
Query: 397 MLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
++KG +P T L + +++++ A E +D +L+H
Sbjct: 452 AIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHG 491
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 101/241 (41%), Gaps = 23/241 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I+G+CK A K +++ GF PD +Y+ I C + D + E
Sbjct: 324 YNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAM 383
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
EKG K S+I ++ L K + +AL++ + M C D Y+ ++
Sbjct: 384 EKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLS 443
Query: 325 ---FILSKAVR------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
IL+ A+ +NT+I C + A+++ + PD T+ L
Sbjct: 444 DANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLL 503
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDELLTH 434
C +++ + V++ + ML KG P T+ +L E K + + A E E+ T
Sbjct: 504 NGLCKARKLDN---VVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTR 560
Query: 435 A 435
Sbjct: 561 G 561
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 95/231 (41%), Gaps = 23/231 (9%)
Query: 80 SHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEA 139
SH ++ D T ++ + + R D VV+ K A + G TYN ++E+
Sbjct: 489 SHGITPDVITYNTLLNGLCKAR--KLDNVVDTFK------AMLEKGCTPNIITYNILIES 540
Query: 140 LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYK 199
K +K EL KE M T D + L+ L + AY+
Sbjct: 541 FCKDRKVSEAMELFKE-------------MKTRGLTPDIVTLCTLICGLCSNGELDKAYE 587
Query: 200 VFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY 257
+F+ + S S+ IF+++I+ +C A+K +M +PD +Y I+ Y
Sbjct: 588 LFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSY 647
Query: 258 CREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
C+ + L E KG PS TC V++ L ++ EA+ + M
Sbjct: 648 CKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLM 698
>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 418
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 118/271 (43%), Gaps = 31/271 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L AM + D SVL++ L K + +
Sbjct: 164 KWGLRPSVV-SFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRM 222
Query: 195 AHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A +F + D + + + F LI G CK + D A ++M GFSPD V+Y
Sbjct: 223 DEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTL 282
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I C++ D ++ Y L EM KG KP IT T ++ K + A ++ E+M +
Sbjct: 283 IYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESI 342
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
D Y++LIF L C +A K+ +++ KPD ET+
Sbjct: 343 RLDDVVYTALIFGL----------------CQEGRAVDAEKMLREMLRVGLKPDDETYTM 386
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ C K +K L+REM G VP
Sbjct: 387 IMNEFCKKGDVKKAS---ELLREMQRNGRVP 414
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 102/264 (38%), Gaps = 57/264 (21%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAM----------------------------------- 235
S F++L+H +CK + AQ
Sbjct: 135 SLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M G PD +Y+ I C+E + + EM + G P+ +T T ++ K
Sbjct: 195 NAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKN 254
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS-----KAVRFLI--------------Y 336
++ A+ +Y +M + D Y++LI+ L K R+L+ Y
Sbjct: 255 GRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITY 314
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
T+I +C + A +LR+++ ++S + D + + C + R D ++RE
Sbjct: 315 TTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAE---KMLRE 371
Query: 397 MLSKGIVPQESTHKMLAEELEKKS 420
ML G+ P + T+ M+ E KK
Sbjct: 372 MLRVGLKPDDETYTMIMNEFCKKG 395
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 148 LMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKD 206
L++ L K+ D L L MS + D + L+D K + A+++ + K+
Sbjct: 282 LIYGLCKKGD-LKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKE 340
Query: 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
I L ++ LI G C+ ++ A+K ++EM + G PD +YT + +C++ D +K
Sbjct: 341 SIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKA 400
Query: 267 DYTLKEMQEKGCKPSVIT 284
L+EMQ G P V+T
Sbjct: 401 SELLREMQRNGRVPCVVT 418
>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
Length = 742
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 144/317 (45%), Gaps = 40/317 (12%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP+ TYN +++ L K G +L+K+++ ST R T + ++D
Sbjct: 423 TPDEVTYNTLIDNLCSLGKLGKALDLLKDME------------STGCPR-STITYNTIID 469
Query: 187 TLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L K+ + A +VF + IS ++ F+ LI G CK +K D A + +M G P
Sbjct: 470 GLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQP 529
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
+ ++Y + HYC++ D +K L+ M G + V+T +++ L KA + ALKV
Sbjct: 530 NNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVL 589
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFL--IYNTMISSACVRSEEGNALKLRQKIEEDS 363
M+ K +R YN ++ S R+ +AL L +++ E
Sbjct: 590 RGMR------------------IKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVG 631
Query: 364 CKPDCETHARSLK-MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLG 422
PD T+ + +C +K+ + M EM+ KG +P+ S+ +MLAE L +
Sbjct: 632 EPPDALTYKIVFRGLCRGGGPIKE---AFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMD 688
Query: 423 NAKERIDELLTHATEQR 439
+ R E++ + R
Sbjct: 689 DYFIRAIEIIMEKVDLR 705
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 22/256 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D + LM V+ S+ A +V + + ++++ +VLI+G+CK + + A +
Sbjct: 215 DETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYI 274
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++ GF PD ++Y F+ C+ + M ++G P V T IV++ L K
Sbjct: 275 QQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKN 334
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
Q+ EA + +M CL D + +NT+I++ C + AL L
Sbjct: 335 GQLEEAKGILNQMVDRGCLPDIT----------------TFNTLIAALCTGNRLEEALDL 378
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+++ PD T + C ++ D L L L EM + G P E T+ L +
Sbjct: 379 ARQVTVKGVSPDVYTFNILINALC---KVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 435
Query: 416 LEKKSLGNAKERIDEL 431
L SLG + +D L
Sbjct: 436 L--CSLGKLGKALDLL 449
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/336 (21%), Positives = 124/336 (36%), Gaps = 37/336 (11%)
Query: 100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDEL 159
+ P PD + L A + + PE Y ++ LG LM LV E+
Sbjct: 49 REQPDPDAALRMLNA-----ALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRRE 103
Query: 160 SNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLI 219
+ + V LD+ L D V + + + + + + + + +VL+
Sbjct: 104 GHQ----VKLGVVHSFLDSYEGQQLFDDAV--DLILNQLQPLFGIQADTVVYNHLLNVLV 157
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
G K + EM G PD V++ ++ CR R L+EM +G
Sbjct: 158 EG----SKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVA 213
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------ 333
P T T +M + I AL+V +M C + LI K R
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 273
Query: 334 -------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
+ YNT ++ C G+ALK+ + ++ PD T+ + C
Sbjct: 274 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++++ +LN +M+ +G +P +T L L
Sbjct: 334 NGQLEEAKGILN---QMVDRGCLPDITTFNTLIAAL 366
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 22/225 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F++LI+ CK A + +EM G +PD V+Y I++ C K LK+M+
Sbjct: 394 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 453
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
GC S IT ++ L K +I EA +V+++M + +++LI L K +
Sbjct: 454 STGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKID 513
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ YN++++ C + + A + + + + + D T+ +
Sbjct: 514 DAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLI 573
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C R + + L ++R M KG+ P + + + L +++
Sbjct: 574 NGLCKAGRTQ---VALKVLRGMRIKGMRPTPKAYNPVLQSLFRRN 615
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/363 (19%), Positives = 136/363 (37%), Gaps = 39/363 (10%)
Query: 53 SPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVS-EILRKRYPSPDKVVEA 111
+PDE + +VE + R+ + L + KV+ +L Y +V +A
Sbjct: 213 APDETTFTTLMQGFVEEGSIEAALRVKARML--EMGCSATKVTVNVLINGYCKLGRVEDA 270
Query: 112 LKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMST 171
L + + G+ TYN V L ++ D + + + M
Sbjct: 271 LG---YIQQEIADGFEPDQITYNTFVNGLCQN-------------DHVGHALKVMDVMVQ 314
Query: 172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKSDY 230
D +++++ L K + A + + D L F+ LI C + +
Sbjct: 315 EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE 374
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A +++ G SPD ++ I C+ D +EM+ GC P +T ++
Sbjct: 375 ALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLID 434
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------------- 333
L ++ +AL + + M+S C T Y+++I L K +R
Sbjct: 435 NLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR 494
Query: 334 --LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+ +NT+I C + +A L ++ + +P+ T+ L C + +K +L
Sbjct: 495 NAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADIL 554
Query: 392 NLM 394
M
Sbjct: 555 ETM 557
>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 485
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/349 (21%), Positives = 147/349 (42%), Gaps = 59/349 (16%)
Query: 117 FTWAKTQ---TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM 173
F WA+ Q G HT +++ +V +L K +++ LMW++V + G V++ +M
Sbjct: 86 FEWARKQRRGGGCAHTVRSFHTVVASLAKIRQYQLMWDVVAIMRR--QGVVNVETFGIIM 143
Query: 174 RRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL 210
R+ + A + L+ L K +V A ++F + S
Sbjct: 144 RKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLCALCKSKNVRKAQEIFEQMNGRFSP 203
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ + +L+ GW + +K +M G PD V+Y ++ C+ + + +
Sbjct: 204 DAKTYSILLEGWGRAPNLPKMRKVYSDMLDAGCQPDIVTYGIMVDSLCKTGRVEEAVFVV 263
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
++M +GC+P+ ++++H +I +A+ + M+ D + D Y++L+ K
Sbjct: 264 QDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMQKDGIVPDVVVYNALVTAFCKV 323
Query: 331 VRF-----------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
+F +I N +IS + +E + R+ I+ C+PD
Sbjct: 324 KKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISLG--KDDEAYRV-FRRMIKR--CQPD 378
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+T+ +KM C R++ + V MR K +P T +L L
Sbjct: 379 SDTYTMMIKMFCENDRLEMALKVWKYMR---LKQFLPSMHTFSVLINGL 424
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
YNA+V A K KKF + ++ +++ +G ++R +++++ L+
Sbjct: 312 VYNALVTAFCKVKKFDNAFRVMDDME--GHGITP-----------NSRTWNIILNKLISL 358
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
AY+VF + S + ++I +C+ + + A K K M F P +++
Sbjct: 359 GKDDEAYRVFRRMIKRCQPDSDTYTMMIKMFCENDRLEMALKVWKYMRLKQFLPSMHTFS 418
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
I C + + + L++M EKG +P
Sbjct: 419 VLINGLCDKGEVSQACVLLEDMIEKGIRP 447
>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Cucumis sativus]
Length = 857
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 139/315 (44%), Gaps = 45/315 (14%)
Query: 119 WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR--- 175
+ + G+ H+ YN +V+ L K GL+ + +L M +M
Sbjct: 380 YEAMEKGFKHSIILYNTLVKGLSKQ---GLVLQ-------------ALQLMKDMMEHGCS 423
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQK 233
D +++++ L K ++ A + K CI F+ LI G+CK R D A +
Sbjct: 424 PDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIP-DIFTFNTLIDGYCKQRNMDKAIE 482
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
+ M HG +PD ++Y + C+ + V T K M EKGC P++IT I++ +
Sbjct: 483 ILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFC 542
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------------FI-LSKAVRF---- 333
K +++ EA++++++MK+ D +LI F+ + K +F
Sbjct: 543 KDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYST 602
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
I+N MI++ C + A KL K+ C PD T+ + C + L
Sbjct: 603 AIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNID---LAHTF 659
Query: 394 MREMLSKGIVPQEST 408
+ E +SKG+VP +T
Sbjct: 660 LLENISKGLVPSFTT 674
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 147/347 (42%), Gaps = 54/347 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKF----GLMWELVKEIDE--LSNGYVSL---- 166
F KT+ G+ HT ETY M+E LG KF ++ E+ K +D L Y+ +
Sbjct: 27 FNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDY 86
Query: 167 ------AAMSTVMRRLD-------TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
V R+D ++ + +M+ LV+ + A+KV+++ KD I +
Sbjct: 87 GRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKD-IGIYPD 145
Query: 214 IF--DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
++ + + +C T + A + + M G + VSY I + +E + +
Sbjct: 146 VYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFD 205
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK-MKSDDCLTDTSFYSSLIFI---- 326
EM ++G P ++T ++H L K + E+ K++ K MK C + ++ IFI
Sbjct: 206 EMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVC---PNLFTFNIFIQGLC 262
Query: 327 ----LSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
+ +A R L YNT+I C S+ A K+ +P+
Sbjct: 263 RKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEF 322
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
T+ + C M++ +L R+ + KG +P E T+ L L
Sbjct: 323 TYNTIINGFCKAGMMQNADKIL---RDAMFKGFIPDEFTYSSLINGL 366
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 122/280 (43%), Gaps = 24/280 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + L+ L K+ +V + K+F K K + + F++ I G C+ D A + +
Sbjct: 215 DILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLL 274
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ + G +PD +SY I +C+ + + L +M G +P+ T +++ KA
Sbjct: 275 ESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKA 334
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL--------SKAVRF-----------LIY 336
+ A K+ + D YSSLI L + AV + ++Y
Sbjct: 335 GMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILY 394
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT++ + AL+L + + E C PD T+ + C + D +LN +
Sbjct: 395 NTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILN---D 451
Query: 397 MLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
++KG +P T L + +++++ A E +D +L+H
Sbjct: 452 AIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHG 491
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 101/241 (41%), Gaps = 23/241 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I+G+CK A K +++ GF PD +Y+ I C + D + E
Sbjct: 324 YNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAM 383
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
EKG K S+I ++ L K + +AL++ + M C D Y+ ++
Sbjct: 384 EKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLS 443
Query: 325 ---FILSKAVR------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
IL+ A+ +NT+I C + A+++ + PD T+ L
Sbjct: 444 DANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLL 503
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDELLTH 434
C +++ + V++ + ML KG P T+ +L E K + + A E E+ T
Sbjct: 504 NGLCKARKLDN---VVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTR 560
Query: 435 A 435
Sbjct: 561 G 561
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 96/231 (41%), Gaps = 23/231 (9%)
Query: 80 SHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEA 139
SH ++ D T ++ + + R D VV+ K A + G TYN ++E+
Sbjct: 489 SHGITPDVITYNTLLNGLCKAR--KLDNVVDTFK------AMLEKGCTPNIITYNILIES 540
Query: 140 LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYK 199
K +K EL KE M T D + L+ L + AY+
Sbjct: 541 FCKDRKVSEAMELFKE-------------MKTRGLTPDIVTLCTLICGLCSNGELDKAYE 587
Query: 200 VFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY 257
+F+ + S S+ IF+++I+ +C+ A+K +M +PD +Y I+ Y
Sbjct: 588 LFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSY 647
Query: 258 CREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
C+ + L E KG PS TC V++ L ++ EA+ + M
Sbjct: 648 CKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLM 698
>gi|224123678|ref|XP_002319139.1| predicted protein [Populus trichocarpa]
gi|222857515|gb|EEE95062.1| predicted protein [Populus trichocarpa]
Length = 518
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 149/343 (43%), Gaps = 47/343 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM--- 173
F WA Q GY H+ Y++M+ LGK +KF W L+ E+ + G VSL T++
Sbjct: 76 FLWAARQPGYAHSVREYHSMISILGKMRKFDTAWVLIDEMRGVKTG-VSLVTPQTLLIMI 134
Query: 174 ----------RRLDT-------------RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL 210
R ++T L+ L + +V A ++ K L
Sbjct: 135 RKYCAVHDVGRAINTFYAYKRFKFDMGIEEFQSLLSALCRYKNVQDAEQLMYCNKAVFPL 194
Query: 211 SSQIFDVLIHGWCKTRKSDY-AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+++ F+++++GWC S +++ +EM + G D VSY + Y + +V
Sbjct: 195 NTKSFNIVLNGWCNLIGSPRESERVWREMSKRGIRFDVVSYASMMSCYSKAGSLYRVLRL 254
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
K+M++ G +P V+HAL K + + EA + + M+ + Y+SLI L +
Sbjct: 255 YKQMKKIGIEPDRKVYNAVIHALAKGRLVNEAFNLMKTMEEKGVAPNIVTYNSLIKPLCR 314
Query: 330 AVRF----LIYNTMIS---SACVRSEEG---------NALKLRQKIEEDSCKPDCETHAR 373
A + ++ M+ S +R+ L +K+ + C+P +T+
Sbjct: 315 ARKVEEAKGAFDDMLKRCISPTIRTYHAFLRILRTGEEVFALLEKMRKMGCQPINDTYIM 374
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ C +++++ V L EM GI P S++ +L L
Sbjct: 375 LIRKFCRWRQLEN---VFKLWDEMSENGISPDRSSYIVLIHGL 414
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 17/187 (9%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+ YNA++ AL K + + L+K ++E A + V + L+ L +
Sbjct: 268 KVYNAVIHALAKGRLVNEAFNLMKTMEEKG------VAPNIV-------TYNSLIKPLCR 314
Query: 191 RNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
V A F K CIS + + + + R + +++M + G P +
Sbjct: 315 ARKVEEAKGAFDDMLKRCISPTIRTYHAFLR---ILRTGEEVFALLEKMRKMGCQPINDT 371
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y I +CR + V EM E G P + +++H L ++ A K Y +MK
Sbjct: 372 YIMLIRKFCRWRQLENVFKLWDEMSENGISPDRSSYIVLIHGLFLNGELDAAHKYYTEMK 431
Query: 310 SDDCLTD 316
L +
Sbjct: 432 EKQLLPE 438
>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Brachypodium distachyon]
Length = 547
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 148/355 (41%), Gaps = 60/355 (16%)
Query: 104 SPDKVVEALKCFC---------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVK 154
SP+ V E L+ F WA+ Q G+ +T E+++ ++EALGK K+F L+W LV+
Sbjct: 126 SPELVAEVLRNLSNAGILALAFFRWAERQQGFRYTAESFHNLIEALGKIKQFRLVWSLVE 185
Query: 155 EIDELSNGYVSLAAMSTVMRRLDTRAMSV------------------------LMDTLVK 190
+ G +S ++RR RA V L+D L K
Sbjct: 186 AMR--CRGLLSKDTFRLIVRRY-ARARKVKEAVETFEKMSSFGLKADLSDYNWLIDVLSK 242
Query: 191 RNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
V A+ +F + K + + VL+ GW + + +EM G PD V
Sbjct: 243 SKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIKPDVV 302
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+Y I +C+ + +EM+ GC PS ++++ L +++ EALK +E
Sbjct: 303 AYGTLISSFCKSGKCDEAIKVFREMEANGCMPSPHVYCMLINGLGSEERLDEALKYFELS 362
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA---------LKLRQKI 359
K+ + ++++ ++ +F M+ NA L QKI
Sbjct: 363 KASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKTGIGPNARTYDIILQYLIKSQKI 422
Query: 360 EE----------DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
EE + C+P T+ + M C +R+ + L + ++M KG++P
Sbjct: 423 EEAYNVFQRMGMEGCEPQLNTYTMMVGMFCSNERVD---MALKVWKQMKEKGVLP 474
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+ ++ +C++ K +A K + EM + G P+ +Y +++ + + + + M
Sbjct: 375 NAVVGAYCRSSKFQHAFKMVDEMRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGM 434
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335
+GC+P + T T+++ +++ ALKV+++MK L +SSLI L
Sbjct: 435 EGCEPQLNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSSLI-------NGLC 487
Query: 336 YNTMISSACVRSEE 349
+ + ACV +E
Sbjct: 488 FENRLEEACVYFQE 501
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 95/218 (43%), Gaps = 23/218 (10%)
Query: 110 EALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAM 169
EA+K F A G M +P Y ++ LG ++ +DE + Y L+
Sbjct: 319 EAIKVFREMEA---NGCMPSPHVYCMLINGLGSEER----------LDE-ALKYFELSKA 364
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKS 228
S + T + ++ + + HA+K+ + K I +++ +D+++ K++K
Sbjct: 365 SGFPMEVPT--CNAVVGAYCRSSKFQHAFKMVDEMRKTGIGPNARTYDIILQYLIKSQKI 422
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK---EMQEKGCKPSVITC 285
+ A + M G P +YT + +C + +VD LK +M+EKG P +
Sbjct: 423 EEAYNVFQRMGMEGCEPQLNTYTMMVGMFCSNE---RVDMALKVWKQMKEKGVLPCMHMF 479
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+ +++ L ++ EA +++M +S+L
Sbjct: 480 SSLINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNL 517
>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 756
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 136/288 (47%), Gaps = 36/288 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY+ ++E+L ++ L+KE+ ELS ++ +T L+D L K
Sbjct: 444 TYSILIESLCSERRLKEALMLLKEM-ELSGCARNVVVYNT------------LIDGLCKN 490
Query: 192 NSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
N V A +F + + +S SS ++ LI+G CK+++ + A + M +M G PD +Y
Sbjct: 491 NRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTY 550
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T ++++C++ D ++ ++ M GC+P ++T ++ L KA ++ A K+ ++
Sbjct: 551 TTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQM 610
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+L+ YN +I + C R A++L +++ E PD T
Sbjct: 611 KG------------MVLTPQA----YNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVIT 654
Query: 371 HARSLKMCCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLAEEL 416
+ + C+ G + ++ EML KGI+P+ + LAE L
Sbjct: 655 YKIVFRGLCN----GGGPIQEAVDFTVEMLEKGILPEFPSFGFLAEGL 698
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 144/346 (41%), Gaps = 53/346 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE-------IDELSNGYVSLAAM 169
F WA Q Y P ++ ++ L ++ F M L+++ +DE S + L
Sbjct: 79 FQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTLLRQMHSSKIPVDE-STFLIFLETY 137
Query: 170 ST-------------VMRR-----LDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISL 210
+T +M R DTR +V + LVK N + + K D +
Sbjct: 138 ATSHHLHAEINPLFLLMERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPP 197
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
F++LI CK + A +++M +G PD ++T ++ + E D
Sbjct: 198 DVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIK 257
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALK-VYEKMKSDDCLTDTSFYSSLI----- 324
+ M E GC+ + ++ ++++ L K +I EAL+ +YE+ + D +++L+
Sbjct: 258 ELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYEE---EGFCPDQVTFNALVNGLCR 314
Query: 325 ------------FILSKAVRFLI--YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
F+L K + YN++IS C E A+++ + C+P+ T
Sbjct: 315 TGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVT 374
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ + C + ++ L R + SKG++P T L + L
Sbjct: 375 YNTLIGTLCKENHVEAAT---ELARVLTSKGVLPDVCTFNSLIQGL 417
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 113/507 (22%), Positives = 197/507 (38%), Gaps = 105/507 (20%)
Query: 1 MPPKHDIWKLLSQSHLQKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVI 60
+PP + +L ++ L K H++ P +L + +P++ PDE
Sbjct: 195 VPPDVSTFNILIRA-LCKAHQLRPAILMLED----------MPNY-----GLRPDEKTFT 238
Query: 61 PSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWA 120
+ ++E + RI + E V+ +L ++ EAL+ +
Sbjct: 239 TLMQGFIEEADVEGALRIKELMVESGCELTSVSVN-VLVNGLCKEGRIEEALR-----FI 292
Query: 121 KTQTGYMHTPETYNAMVEALGKSK--KFGL-----MWELVKEID-----ELSNGYVSLAA 168
+ G+ T+NA+V L ++ K GL M E E+D L +G L
Sbjct: 293 YEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGE 352
Query: 169 MSTVMRRL----------DTRAMSVLMDTLVKRNSVAHAYKV--FLKFKDCISLSSQIFD 216
+ + L +T + L+ TL K N V A ++ L K + F+
Sbjct: 353 IDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLP-DVCTFN 411
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
LI G C T + A + +EM + G PD +Y+ IE C E+ ++ LKEM+
Sbjct: 412 SLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELS 471
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--- 333
GC +V+ ++ L K ++ +A ++++M+ + Y++LI L K+ R
Sbjct: 472 GCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEA 531
Query: 334 ----------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA----- 372
Y TM+ C + + A + Q + + C+PD T+
Sbjct: 532 AQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGG 591
Query: 373 --------------RSLKM----------------CCHKKRMKDGMLVLNLMREMLSKGI 402
RS++M C +KR K+ M L REM+ KG
Sbjct: 592 LCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAM---RLFREMMEKGD 648
Query: 403 VPQESTHKMLAEELEKKSLGNAKERID 429
P T+K++ L G +E +D
Sbjct: 649 PPDVITYKIVFRGLCNGG-GPIQEAVD 674
>gi|115448805|ref|NP_001048182.1| Os02g0759500 [Oryza sativa Japonica Group]
gi|46805701|dbj|BAD17102.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47497356|dbj|BAD19395.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537713|dbj|BAF10096.1| Os02g0759500 [Oryza sativa Japonica Group]
gi|125583759|gb|EAZ24690.1| hypothetical protein OsJ_08460 [Oryza sativa Japonica Group]
gi|215704115|dbj|BAG92955.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215766866|dbj|BAG99094.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 555
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 139/326 (42%), Gaps = 49/326 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALG----KSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
F WA Q GY H TYN +++ L K+++FG++ +++ + V + + +
Sbjct: 133 FVWASHQDGYEHEAATYNDVIDILSGTRYKARQFGVLCDVLDHMKRRRTRSVPVDDLLGI 192
Query: 173 MRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209
+R +T A++VL+D K V A VF + K +
Sbjct: 193 LRAYTEKHLTHLRKLAKKRRVRMRTPPETDALNVLLDAFCKCGMVREAEVVFSRVKRKLL 252
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+++ + +L GWC+ R A K ++EM Q +P+ +Y I+ +C +
Sbjct: 253 GNAETYSILFFGWCRARDPKRAMKVLEEMIQMKHTPENFTYNAAIDSFCSAGLVSEARDL 312
Query: 270 LKEMQEKG---CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
+ M+ +G P+ T +I++ AL KA Q+ E ++ +M+ C+ D S Y LI
Sbjct: 313 FEFMRTEGSTISSPTAKTYSIMIAALAKAGQMEECFELISEMRKCGCMPDVSTYKDLIEG 372
Query: 327 LSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
+ L+ + + ++ CV E A PD T+ LK+ C ++ D
Sbjct: 373 M------LLVDKLDAAYCVLDEMAKA----------GFPPDIVTYNCFLKVLCGLQKADD 416
Query: 387 GMLVLNLMREMLSKGIVPQESTHKML 412
L L M+ P T+ ML
Sbjct: 417 A---LELCERMIEAHCEPSVHTYNML 439
>gi|255568998|ref|XP_002525469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535282|gb|EEF36959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 581
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 145/343 (42%), Gaps = 47/343 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLA--------- 167
F WA Q GY H+ Y+AM+ LGK +KF W L+ E+ + G +SL
Sbjct: 148 FLWAGRQLGYSHSVREYHAMISILGKMRKFDTAWALIDEMRGVKTG-ISLVTPQTLLIMI 206
Query: 168 ----AMSTVMRRLDT-------------RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL 210
A+ V R ++T L+ L + +V A + KD
Sbjct: 207 RKYCAVHDVGRAINTFYAHKRFKFDLGIDEFQSLLSALCRYKNVQDAEHLMFCNKDVFPF 266
Query: 211 SSQIFDVLIHGWCKTRKSDY-AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+++ F+++++GWC S A + +EM + D VSY I Y + + KV
Sbjct: 267 NTKSFNIVLNGWCNVIGSPREADRIWREMCKRRIHYDVVSYASIISCYSKAGNLYKVFKL 326
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
+M+E G +P V+ AL K + + EA+ + + M+ +T Y+SLI L +
Sbjct: 327 YNQMKEVGIEPDRKIYNSVIFALAKGRHVSEAINLMKTMEEKGIAPNTVTYNSLIKPLCR 386
Query: 330 AVRF----LIYNTMIS---SACVRSEEGNALKLR---------QKIEEDSCKPDCETHAR 373
A + +++ M+ S +R+ LR + + + C P +T+
Sbjct: 387 ARKIDEARGLFDEMLQHGHSPTIRTYHAFFRSLRTGEEVFALLENMRKLGCHPTIDTYIM 446
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ C ++ D V L ++ G+ P S++ +L L
Sbjct: 447 LIRKFCRWRQFDD---VFKLWNQISENGLGPDRSSYIVLIHGL 486
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 108/264 (40%), Gaps = 28/264 (10%)
Query: 174 RRL--DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDY 230
RR+ D + + ++ K ++ +K++ + K+ I +I++ +I K R
Sbjct: 298 RRIHYDVVSYASIISCYSKAGNLYKVFKLYNQMKEVGIEPDRKIYNSVIFALAKGRHVSE 357
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A MK M + G +P+ V+Y I+ CR + + EM + G P++ T
Sbjct: 358 AINLMKTMEEKGIAPNTVTYNSLIKPLCRARKIDEARGLFDEMLQHGHSPTIRTYHAFFR 417
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEG 350
+L ++++ L E M+ C Y I ++ K R+ ++
Sbjct: 418 SLRTGEEVFALL---ENMRKLGCHPTIDTY---IMLIRKFCRWRQFD------------- 458
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
+ KL +I E+ PD ++ + ++++ M+E K ++P +
Sbjct: 459 DVFKLWNQISENGLGPDRSSYIVLIHGLFLNGKLEEAYKFYADMKE---KQLLPDPKLDE 515
Query: 411 MLAEELEKKSLGN---AKERIDEL 431
ML L K + + ++D+L
Sbjct: 516 MLQTWLSNKQVAECQMTESKVDQL 539
>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
Length = 443
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 132/312 (42%), Gaps = 50/312 (16%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKE-------------------------IDELSN 161
TP+ TY ++++ LGK K+ ++L KE I + S+
Sbjct: 101 TPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASS 160
Query: 162 GYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIH 220
Y ++ + V D +S ++D L K + A ++F + ++ + ++ LIH
Sbjct: 161 VYKTMTSQGCVP---DVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIH 217
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G CK RK D A + + +M + +PD ++Y I+ C+ D EM E GCKP
Sbjct: 218 GLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKP 277
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340
V T I++ KA A V++ M S C + + Y T+I
Sbjct: 278 DVYTYNILISGFCKAGNTDAACGVFDDMSSSRC----------------SPNVVTYGTLI 321
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
S C R + A Q ++E C PD ++ + C +++ G ++ + EM
Sbjct: 322 SGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFD---EMERS 378
Query: 401 GIVPQESTHKML 412
G+ ++ +++
Sbjct: 379 GVANSQTRTRLI 390
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 111/257 (43%), Gaps = 23/257 (8%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
+D + ++D L K + A + K + + + ++ L++G CK + + A
Sbjct: 32 IDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDL 91
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
++++ +G +PD V+YT I+ ++K + KEM +G + T ++ L +
Sbjct: 92 LRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQ 151
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LI 335
A +I +A VY+ M S C+ D S++I L KA R ++
Sbjct: 152 AGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVV 211
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
Y+ +I C + AL++ ++++ C PD T+ + C + D
Sbjct: 212 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLC---KSGDVAAARAFFD 268
Query: 396 EMLSKGIVPQESTHKML 412
EML G P T+ +L
Sbjct: 269 EMLEAGCKPDVYTYNIL 285
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F +LI+G K A +E +G + D +YT ++ + K ++ ++++
Sbjct: 2 FSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKIT 61
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
GC P++ T +++ L K ++ EA+ + K+ + C D Y+SLI L K
Sbjct: 62 ANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSF 121
Query: 330 ---------AVRFLIYNTMISSACVRS--EEG---NALKLRQKIEEDSCKPDCETHARSL 375
A R L +T+ +A +R + G A + + + C PD T + +
Sbjct: 122 EAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMI 181
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
C R+ + + + M ++G+ P E + L L K
Sbjct: 182 DGLCKAGRIG---AAVRIFKSMEARGLAPNEVVYSALIHGLCK 221
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 81/206 (39%), Gaps = 20/206 (9%)
Query: 129 TPET--YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP+T YN +++ L KS E+ E + D ++L+
Sbjct: 241 TPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGC-------------KPDVYTYNILIS 287
Query: 187 TLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
K + A VF + C S + + LI G CK R+ A + M + G
Sbjct: 288 GFCKAGNTDAACGVFDDMSSSRC-SPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCP 346
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD Y+ ++ C+ EM+ G S ++ H L KA ++ EA+ +
Sbjct: 347 PDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFH-LCKANRVDEAVSL 405
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKA 330
+ ++ + + Y+S+I L K+
Sbjct: 406 FNAIRKEG-MPHPYAYNSIISALIKS 430
>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
Length = 621
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 117/270 (43%), Gaps = 31/270 (11%)
Query: 173 MRRLDTRAMS--VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-------FDVLIHGWC 223
+RRL R +S + L N++ A F D SL+S++ + LI+ +C
Sbjct: 24 LRRLSHRVLSPSAPLPPLRCLNTLLMALARHRMFPDMESLASRMPARNLRTYTTLINAYC 83
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
A++ + + G +PD +YT F+ YCR M +GC +
Sbjct: 84 LAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAF 143
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----------- 332
T T ++H L A + EA+ V+ M++D C DT Y++++ L +A R
Sbjct: 144 TYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEA 203
Query: 333 --------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
++YN +I C E +ALK+ + ++ + C P+ T+ + C ++
Sbjct: 204 MSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKV 263
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ M+ L M+ G+ P T+ L +
Sbjct: 264 ERAMV---LFSRMVEAGLEPNVVTYTALIQ 290
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLK--FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
SVL+D L KR V A ++FL K + ++ ++ LI G CKT K D A + M++M
Sbjct: 321 SVLIDALCKREKVEEA-QLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMI 379
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
GF PD SY+ I+ CR+K + L++M EKG + S +T TI++ L +
Sbjct: 380 SEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSE 439
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLI 324
K+++KM + D Y+ +
Sbjct: 440 GPKKIFDKMIATGINPDIVTYTVFV 464
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 71/171 (41%), Gaps = 14/171 (8%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G++ +Y+++++ L + KK LS + L M + +++
Sbjct: 382 GFVPDAHSYSSLIDGLCRQKK-------------LSQATLMLEDMMEKGIQASPVTYTII 428
Query: 185 MDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D LV+ K+F K I+ + V + +C+ + + A+ + +M G
Sbjct: 429 IDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGV 488
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
P+ V+Y I Y + T + M KG KP+ + T+++ + K
Sbjct: 489 FPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVK 539
>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
Length = 614
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/366 (23%), Positives = 146/366 (39%), Gaps = 79/366 (21%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI------------DELSNGYVSLAAMS---TVMRRL 176
TY +V+ L K K WE+++E+ + L +G +S +MR +
Sbjct: 228 TYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDM 287
Query: 177 DTRAMS-------VLMDTLVKRNSVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKS 228
R + L+D L K V A + D I+++LI+G CK +
Sbjct: 288 TCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQV 347
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D + ++ G PD V+Y+ I CR + L ++ +GC P VI + +
Sbjct: 348 DESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTL 407
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAVRF-- 333
+ L KA ++ EA +YE M D C D YS+LI +L++ VR
Sbjct: 408 IDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGT 467
Query: 334 ----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK---- 385
+ YN++I C + A++L +++E +C P T+ + C +R+
Sbjct: 468 PPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVV 527
Query: 386 --------------------------DGML-------VLNLMREMLSKGIVPQESTHKML 412
DG+ L+ +EM+ G++P T+ +L
Sbjct: 528 LLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSIL 587
Query: 413 AEELEK 418
E L+K
Sbjct: 588 LEGLKK 593
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 141/321 (43%), Gaps = 37/321 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY+ +++ L K+ + EL L +M D ++L+D L K
Sbjct: 193 TYSVLIDGLCKANRVSQAVEL-------------LESMKARGCSPDVITYTILVDGLCKE 239
Query: 192 NSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ VA A++V + D + + + ++ L+HG C+ R+ A M++M G +P+ V+Y
Sbjct: 240 SKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTY 299
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I+ C+ + L +M +KG P ++ ++++ L KA Q+ E++ + + S
Sbjct: 300 GTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVS 359
Query: 311 DDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGN 351
D YSS+I+ L ++ R ++Y+T+I C +
Sbjct: 360 GGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDE 419
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A L + + D C D T++ + C R+ + L+L M M G P T+
Sbjct: 420 AFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRM---GTPPSTMTYNS 476
Query: 412 LAEEL-EKKSLGNAKERIDEL 431
L + L + L A E ++E+
Sbjct: 477 LIKGLCDLNHLDEAIELVEEM 497
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 137/321 (42%), Gaps = 37/321 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEID--ELSNGYVSLAAMSTVMRRLDT--RAMSVLMDT 187
TYN++++ L K+ + EL + + E S V+ + + R RAM++ +
Sbjct: 116 TYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEM 175
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
L +R+ D S + + VLI G CK + A + ++ M G SPD
Sbjct: 176 LDRRSH---------DMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDV 226
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
++YT ++ C+E L+EM + GC P+++T ++H L +A+++ +AL +
Sbjct: 227 ITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRD 286
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRSE 348
M C + Y +LI L K R +IYN +I+ C +
Sbjct: 287 MTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQ 346
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
++ L ++ KPD T++ + C R+ + +L ++ S+G P
Sbjct: 347 VDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVK---SRGCPPDVIL 403
Query: 409 HKMLAEELEKKSLGNAKERID 429
+ L + L K G E D
Sbjct: 404 YSTLIDGLCKA--GKVDEAFD 422
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 116/272 (42%), Gaps = 32/272 (11%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
S+L+D L K A + F + I + I+ L+ G K ++ D A + EM
Sbjct: 48 SILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRD 107
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
HG P+ V+Y I+ C+ + + + M+ C PS++T ++ L + ++
Sbjct: 108 HGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLER 167
Query: 301 ALKVYEKM-------KSDDCLTDTSFYSSLIFILSKAVR-------------------FL 334
A+ ++++M D C + YS LI L KA R +
Sbjct: 168 AMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVI 227
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
Y ++ C S+ A ++ +++ + C P+ T+ L C +R+ D L LM
Sbjct: 228 TYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDA---LALM 284
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
R+M +G P T+ L + L K +G K+
Sbjct: 285 RDMTCRGCTPNVVTYGTLIDGLCK--VGRVKD 314
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 111/268 (41%), Gaps = 32/268 (11%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF--DVLIHGWCKTRKSDYAQKA 234
D + L+ + + A + F + + +L +F +LI G CK ++S A +
Sbjct: 8 DVYTYAALLRGFCRGGEIDQAQRCFDEMRS-KNLVPNVFLCSILIDGLCKAKRSIDALRC 66
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ M G D V YT + +EK + L EM++ GC+P+V+T ++ L K
Sbjct: 67 FRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCK 126
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--------------------- 333
+ A +++E MKS +C Y++L+ L + +
Sbjct: 127 NNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDR 186
Query: 334 -----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
+ Y+ +I C + A++L + ++ C PD T+ + C + ++
Sbjct: 187 CSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAW 246
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAEEL 416
VL REML G VP T+ L L
Sbjct: 247 EVL---REMLDAGCVPNLVTYNSLLHGL 271
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 22/175 (12%)
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD +Y + +CR + + EM+ K P+V C+I++ L KAK+ +AL+
Sbjct: 7 PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRC 66
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACV 345
+ M+ + DT Y++L+ L K R + YN++I C
Sbjct: 67 FRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCK 126
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+E A +L + ++ C P T+ L +++ M L +EML +
Sbjct: 127 NNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAM---ALFQEMLDR 178
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 211 SSQIFDVLIHGWCKTRKSDYA-----QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
S+ +++LIHG C+ + D A Q + + G + D ++Y+ I+ C+ +
Sbjct: 505 SAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAE 564
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
+EM + G P IT +I++ L+K+K ++E
Sbjct: 565 ALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHE 599
>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
Length = 545
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 92/381 (24%), Positives = 166/381 (43%), Gaps = 57/381 (14%)
Query: 92 DKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKK------ 145
D V +++ R P P+ E F WA Q+ + H T N ++ K+++
Sbjct: 70 DLVGKVIH-RIPDPNTAWEV-----FQWAGKQSKFTHNRFTCNNLLSVYVKARRVEDAHL 123
Query: 146 -FGLMWELVKEIDELS-----NGYVSLA----AMSTVMRRLDT-----RAMSVLMDTLVK 190
F + V E DE+S NG+ A++ D+ R+ ++++ L
Sbjct: 124 FFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAVLRSHNIVLRGLCS 183
Query: 191 RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
++ A++VF S + + ++I G CK+RK D A K+M PD V+Y
Sbjct: 184 GGKISMAWEVFKDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTY 243
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I+ +++ ++ +E + KGC P+V+T ++ L K +I AL +Y+ M
Sbjct: 244 GALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVR 303
Query: 311 DDCLTDTSF-YSSLIFILSKAVR-------------------FLIYNTMISSACVRSEEG 350
+ L F YS+LI L+ + R + YNT++ C E
Sbjct: 304 EPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCED 363
Query: 351 NALKLRQKIE-EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
A+++ +K+ + C P+ T+ + C R+ D + L +EM + ++P T
Sbjct: 364 KAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDA---VKLAKEMEGRSLLPDAVTF 420
Query: 410 KMLAEELEKKSLGNAKERIDE 430
+ ++L K+S RIDE
Sbjct: 421 TTVIQKLCKES------RIDE 435
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 133/312 (42%), Gaps = 49/312 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKE----------------IDELSN-GYV--SLAAMSTV 172
TY A+++ LGK ++ ++L +E ID L G + +L +
Sbjct: 242 TYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDM 301
Query: 173 MR----RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRK 227
+R + D S L++ L N AY+++ + D S ++ L+ G CK+
Sbjct: 302 VREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGC 361
Query: 228 SDYAQKAMKEMFQHGF-SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
D A + ++M P+ ++YT I+ +C+ KEM+ + P +T T
Sbjct: 362 EDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFT 421
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR 346
V+ L K +I EA +++E + C D+ +++NTM++ C
Sbjct: 422 TVIQKLCKESRIDEAHELFESI-GKTCKPDS----------------VLFNTMLAGYCKI 464
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
+ +A KL ++ + C P T+ + C R D ++ + EM+ G P+
Sbjct: 465 TRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALI---MYHEMIEMGFPPE- 520
Query: 407 STHKMLAEELEK 418
+ LAE +++
Sbjct: 521 ---RHLAELVDR 529
>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
Length = 735
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 117/270 (43%), Gaps = 31/270 (11%)
Query: 173 MRRLDTRAMS--VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-------FDVLIHGWC 223
+RRL R +S + L N++ A F D SL+S++ + LI+ +C
Sbjct: 24 LRRLSHRVLSPSAPLPPLRCLNTLLMALARHRMFPDMESLASRMPARNLRTYTTLINAYC 83
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
A++ + + G +PD +YT F+ YCR M +GC +
Sbjct: 84 LAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAF 143
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----------- 332
T T ++H L A + EA+ V+ M++D C DT Y++++ L +A R
Sbjct: 144 TYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEA 203
Query: 333 --------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
++YN +I C E +ALK+ + ++ + C P+ T+ + C ++
Sbjct: 204 MSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKV 263
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ M+ L M+ G+ P T+ L +
Sbjct: 264 ERAMV---LFSRMVEAGLEPNVVTYTALIQ 290
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLK--FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
SVL+D L KR V A ++FL K + ++ ++ LI G CKT K D A + M++M
Sbjct: 321 SVLIDALCKREKVEEA-QLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMI 379
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
GF PD SY+ I+ CR+K + L++M EKG + S +T TI++ L +
Sbjct: 380 SEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSE 439
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLI 324
K+++KM + D Y+ +
Sbjct: 440 GPKKIFDKMIATGINPDIVTYTVFV 464
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/312 (19%), Positives = 120/312 (38%), Gaps = 26/312 (8%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G++ +Y+++++ L + KK LS + L M + +++
Sbjct: 382 GFVPDAHSYSSLIDGLCRQKK-------------LSQATLMLEDMMEKGIQASPVTYTII 428
Query: 185 MDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D LV+ K+F K I+ + V + +C+ + + A+ + +M G
Sbjct: 429 IDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGV 488
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
P+ V+Y I Y + T + M KG KP+ + T+++ + K ++
Sbjct: 489 FPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVD 548
Query: 304 VYE--KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
+++ MK L + L IY+ I C A ++
Sbjct: 549 IWKIADMKDLQVLLEDITERQLPLAAD------IYSCFIRCLCRVDRLEEAKHFFMGMQN 602
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKS 420
+ P + + + CC K + D L L+ M G +P +++++ L E +
Sbjct: 603 ANLTPSEDVYTSIIDCCCRLKILTDA---LTLLDSMTKSGYLPHLESYRIIISSLCEGGN 659
Query: 421 LGNAKERIDELL 432
AKE +LL
Sbjct: 660 FRTAKEVFGDLL 671
>gi|449457341|ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like [Cucumis sativus]
gi|449523938|ref|XP_004168980.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 84/384 (21%), Positives = 150/384 (39%), Gaps = 87/384 (22%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE--------LSNGYVSLAA 168
F +A + + +YN +++ L K ++F W L+ ++D L +S
Sbjct: 89 FDYANSLPSNPISTTSYNILLDILAKVRQFDAAWHLILQMDHKGTDTFLLLIRRLISSGR 148
Query: 169 MSTVMRRLD-----------TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV 217
+R D L+D L K V A +VF K K+ + +I+ +
Sbjct: 149 TRQAIRAFDDIEGLTGNKVGIDDFCYLLDVLCKYGYVKVAVEVFNKRKEEFGVDVKIYTI 208
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----------EKDFRKVD 267
LI+GWCK + + A++ +K+M + G P+ V+Y + CR EK R +
Sbjct: 209 LIYGWCKIGRFEMAERFLKDMVERGIEPNVVTYNVLLNGVCRRASLHPEGRFEKTIRHAE 268
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--- 324
EM+++G +P V + +IV+H +A + +L ++MK + Y+S+I
Sbjct: 269 KVFDEMRKRGIEPDVTSFSIVLHVYSRAHKPELSLDKLKQMKELGISPTVATYTSVIKCL 328
Query: 325 ----------FILSKAVRFLI------YNTMISSACVRSEEGNALKLRQKIEED------ 362
++ + VR I YN R + AL+L +K+ ED
Sbjct: 329 CSCGRLEDGENLIEEMVRSGISPSPTTYNCFFKEYRGRKDGAGALRLYKKMREDCLCAPS 388
Query: 363 ------------------------------SCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
PD +++ + C K+R +
Sbjct: 389 LHTYNILLALFLNLDKKETLKELWNDMKESGVGPDLDSYTTIIHGLCEKQRWSEA---CQ 445
Query: 393 LMREMLSKGIVPQESTHKMLAEEL 416
EM+ +G +PQ+ T +ML L
Sbjct: 446 FFVEMIERGFLPQKVTFEMLYRGL 469
>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
Length = 436
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 134/309 (43%), Gaps = 36/309 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY +VE L K+K+ + + ++ M+T + D + ++ L +
Sbjct: 116 TYGPIVERLCKTKR-------------IDDALATVEEMATRGIKPDAFIYNFVLSGLCQE 162
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A +F K K I+ + ++ LI+G CK + + A + KEM G+ P VSY
Sbjct: 163 EKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSY 222
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I+ +C++KD +M C P+V+T T ++ L K+ ++ A +V + M
Sbjct: 223 NTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVK 282
Query: 311 DDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGN 351
+ + YS LI K R + YN +++S C + +
Sbjct: 283 KGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLED 342
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A KL + + + C P T+ L+ CH K++ DG L EM++KG P T+
Sbjct: 343 AFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQL-DG--AHRLYAEMIAKGCPPDAITYDT 399
Query: 412 LAEELEKKS 420
LA L +
Sbjct: 400 LAWGLTRAG 408
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 129/307 (42%), Gaps = 24/307 (7%)
Query: 131 ETYNAMVEA--LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL 188
E Y MVEA ++ +G++ + ++ Y L M + A S +++ L
Sbjct: 31 EVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWL 90
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
K N V A ++ K + + ++ CKT++ D A ++EM G PD
Sbjct: 91 CKLNRVEEARELIEKMARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAF 150
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
Y + C+E+ + ++M ++ P+V+T +++ L KA +I A +++++M
Sbjct: 151 IYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEM 210
Query: 309 KSDDCLTDTSFYSSLI-------------FILSKAVR------FLIYNTMISSACVRSEE 349
+ Y++LI + K VR + Y T+I +
Sbjct: 211 AGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKV 270
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
A ++ + + P+ T++ + C +R+ + L+ +M+++GI P T+
Sbjct: 271 QAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAH---KLLEQMVTQGIAPTVVTY 327
Query: 410 KMLAEEL 416
+L L
Sbjct: 328 NILLNSL 334
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 91/238 (38%), Gaps = 62/238 (26%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYV-----------------SLAAMSTVMR 174
TYN ++ L K+ + +EL KE+ GYV L A V
Sbjct: 186 TYNTLINGLCKAWRIETAYELFKEMA--GKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFD 243
Query: 175 RL-------DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTR 226
++ + + L+D L K V A +V K ++ + + LI G+CK R
Sbjct: 244 KMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVR 303
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE-------KDFRK----------VDYT 269
+ D A K +++M G +P V+Y + CR K FR V Y
Sbjct: 304 RVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYN 363
Query: 270 ------------------LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
EM KGC P IT + L +A +++EA ++ EKMK
Sbjct: 364 TLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMK 421
>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
Length = 621
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 117/270 (43%), Gaps = 31/270 (11%)
Query: 173 MRRLDTRAMS--VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-------FDVLIHGWC 223
+RRL R +S + L N++ A F D SL+S++ + LI+ +C
Sbjct: 24 LRRLSHRVLSPSAPLPPLRCLNTLLMALARHRMFPDMESLASRMPARNLRTYTTLINAYC 83
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
A++ + + G +PD +YT F+ YCR M +GC +
Sbjct: 84 LAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAF 143
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----------- 332
T T ++H L A + EA+ V+ M++D C DT Y++++ L +A R
Sbjct: 144 TYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEA 203
Query: 333 --------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
++YN +I C E +ALK+ + ++ + C P+ T+ + C ++
Sbjct: 204 MSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKV 263
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ M+ L M+ G+ P T+ L +
Sbjct: 264 ERAMV---LFSRMVEAGLEPNVVTYTALIQ 290
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLK--FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
SVL+D L KR V A ++FL K + ++ ++ LI G CKT K D A + M++M
Sbjct: 321 SVLIDALCKREKVEEA-QLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMI 379
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
GF PD SY+ I+ CR+K + L++M EKG + S +T TI++ L +
Sbjct: 380 SEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSE 439
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLI 324
K+++KM + D Y+ +
Sbjct: 440 GPKKIFDKMIATGINPDIVTYTVFV 464
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 71/171 (41%), Gaps = 14/171 (8%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G++ +Y+++++ L + KK LS + L M + +++
Sbjct: 382 GFVPDAHSYSSLIDGLCRQKK-------------LSQATLMLEDMMEKGIQASPVTYTII 428
Query: 185 MDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D LV+ K+F K I+ + V + +C+ + + A+ + +M G
Sbjct: 429 IDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGV 488
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
P+ V+Y I Y + T + M KG KP+ + T+++ + K
Sbjct: 489 FPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVK 539
>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
Length = 735
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 148/354 (41%), Gaps = 71/354 (20%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+TG+ TY +++ + KS + L EL+++++E +LD
Sbjct: 204 VETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERK-------------IKLDAVKY 250
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAM----- 235
S+++D L K S+ +A+ +F + + I+ LI G+C + D K +
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK 310
Query: 236 ------------------------------KEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
KEM Q G SPD V+YT I+ +C+E K
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDK 370
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
++ L M KGC P++ T I+++ KA I + L+++ KM + DT Y++LI
Sbjct: 371 ANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQ 430
Query: 326 -----------------ILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
++S+ VR + Y ++ C E AL++ +KIE+ +
Sbjct: 431 GFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMEL 490
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
D + + C+ ++ D +L + KG+ P T+ ++ L KK
Sbjct: 491 DIGIYNIIIHGMCNASKVDDAW---DLFCSLPLKGVKPDVKTYNIMIGGLCKKG 541
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 123/311 (39%), Gaps = 35/311 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL--DTRAMS 182
G + TYN +++ + K + EL +E+ V RR+ D +
Sbjct: 417 GVVADTVTYNTLIQGFCELGKLEVAKELFQEM---------------VSRRVRPDIVSYK 461
Query: 183 VLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+L+D L A ++F K K + L I++++IHG C K D A +
Sbjct: 462 ILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK 521
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD +Y I C++ + D ++M+E G P+ T I++ A ++
Sbjct: 522 GVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKS 581
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL---------IYNTMISSACVRSEEG-- 350
K+ E++K D S+L F LS R L + T++ C+
Sbjct: 582 AKLIEEIKRCGFSVDA---STLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVY 638
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
+A L + ++ KP+ T+ +K + + V ++ +M +G P T
Sbjct: 639 DAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQ---VPGVLDQMFERGCQPNAVTKS 695
Query: 411 MLAEELEKKSL 421
L K+ L
Sbjct: 696 TFISGLCKQDL 706
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 89/207 (42%), Gaps = 22/207 (10%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
++I+ C+ RK A AM ++ + G+ PD V+++ I C E + + M E
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEM 171
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI- 335
G KP++IT +++ L ++ +A+ + ++M + Y ++ ++ K+ + +
Sbjct: 172 GHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA 231
Query: 336 ------------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
Y+ +I C NA L ++E K D + ++
Sbjct: 232 MELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRG 291
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVP 404
C+ R DG L+R+M+ + I P
Sbjct: 292 FCYAGRWDDGA---KLLRDMIKRKITP 315
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 77/388 (19%), Positives = 153/388 (39%), Gaps = 51/388 (13%)
Query: 71 KLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQ------- 123
K++ + R+ S + + VD E+ R R P P ++++ + F Q
Sbjct: 37 KVSYRERLRSGIVDIKEDDAVDLFQEMTRSR-PRP-RLIDFSRLFSVVARTKQYDLVLDL 94
Query: 124 ------TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD 177
G H T + M+ + +K L + + +I +L GY D
Sbjct: 95 CKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKL--GYEP-----------D 141
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMK 236
T S L++ L V+ A ++ + + + I + L++G C K A +
Sbjct: 142 TVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLID 201
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M + GF P+ V+Y ++ C+ L++M+E+ K + +I++ L K
Sbjct: 202 RMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDG 261
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
+ A ++ +M+ F + +I IY T+I C + KL
Sbjct: 262 SLDNAFNLFNEMEI------KGFKADII----------IYTTLIRGFCYAGRWDDGAKLL 305
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ + + PD + + + ++++ L +EM+ +GI P T+ L +
Sbjct: 306 RDMIKRKITPDVVAFSALIDCFVKEGKLREAE---ELHKEMIQRGISPDTVTYTSLIDGF 362
Query: 417 EKKS-LGNAKERIDELLTH--ATEQRTF 441
K++ L A +D +++ RTF
Sbjct: 363 CKENQLDKANHMLDLMVSKGCGPNIRTF 390
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 98/256 (38%), Gaps = 54/256 (21%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
YN ++ + + K W+L + SL + D + ++++ L K+
Sbjct: 495 YNIIIHGMCNASKVDDAWDL----------FCSLPLKGV---KPDVKTYNIMIGGLCKKG 541
Query: 193 SVAHAYKVFLKFK-DCISLSSQIFDVLIH---GWCKTRKSD------------------- 229
S++ A +F K + D S + +++LI G KS
Sbjct: 542 SLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLR 601
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT--LKEMQEKGCKPSVITCTI 287
+A + M + G PD ++T + +C E++ D K M+ G KP+V+T
Sbjct: 602 FALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNT 661
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRS 347
V+ L I + V ++M C + S T IS C +
Sbjct: 662 VIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKS----------------TFISGLCKQD 705
Query: 348 EEGNALKLRQKIEEDS 363
G+A+ L +K+E D+
Sbjct: 706 LHGSAILLLRKMENDN 721
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 31/190 (16%)
Query: 128 HTPE--TYNAMVEA-LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
H+P TYN ++ A LG+ G + K I+E+ S+ D +
Sbjct: 558 HSPNGCTYNILIRAHLGE----GDATKSAKLIEEIKRCGFSV----------DASTLRFA 603
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDY--AQKAMKEMFQHG 242
+ TL + H VF F L+ +C + A K M G
Sbjct: 604 LSTLARMLKAGHEPDVF------------TFTTLLRPFCLEENASVYDAPTLFKNMKAMG 651
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
+ P+ V+Y I+ +V L +M E+GC+P+ +T + + L K A+
Sbjct: 652 YKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAI 711
Query: 303 KVYEKMKSDD 312
+ KM++D+
Sbjct: 712 LLLRKMENDN 721
>gi|356540361|ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Glycine max]
Length = 523
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 143/345 (41%), Gaps = 45/345 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI-------------------- 156
F WAK+ G+ H+ +++ +VE LG K+F ++W+ + E+
Sbjct: 98 FLWAKSIPGFQHSVMSFHILVEILGSCKQFAILWDFLIEMRGSCHYEINSEIFWLIFRAY 157
Query: 157 --DELSNGYV-SLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
L +G + S M + L+ L K V A + F + K+ L+++
Sbjct: 158 SQANLPDGAIRSFNRMDEFGIKPTINDFDKLLFILCKTKHVKQAQQFFDQAKNRFLLTAK 217
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ +LI GW S+ A + + M + G D ++Y ++ C+ + +M
Sbjct: 218 TYSILISGWGDIGDSEKAHELFQAMLEQGCPVDLLAYNNLLQALCKGGCVDEAKTIFHDM 277
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--------- 324
K +P T +I +H+ A + AL+V +KM+ + L + Y+ +I
Sbjct: 278 LSKRVEPDAFTYSIFIHSYCDADDVQSALRVLDKMRRYNILPNVFTYNCIIKRLCKNEHV 337
Query: 325 --------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
++S+ VR YN + + C E A++L ++E+D+C PD T+
Sbjct: 338 EEAYLLLDEMISRGVRPDTWSYNAIQAYHCDHCEVNRAIRLMFRMEKDNCLPDRHTYNMV 397
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
LK+ R V + M K P ST+ ++ KK
Sbjct: 398 LKLLIRIGRFDK---VTKVWGNMGDKKFYPSVSTYSVMIHGFCKK 439
>gi|449442339|ref|XP_004138939.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Cucumis sativus]
Length = 559
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 140/352 (39%), Gaps = 56/352 (15%)
Query: 92 DKVSEIL-RKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALG----KSKKF 146
D V++IL R R+ E L FTWA Q Y H P YN M++ L K K+F
Sbjct: 117 DLVADILHRLRFD------EKLAFRFFTWAARQENYSHEPRVYNEMIDILSSTRYKVKQF 170
Query: 147 GLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD------TLVKRNSVAHAYKV 200
++ +L+ + V + + ++R + ++ L +VKR +A+ +
Sbjct: 171 RIVCDLLDYMKRNDKNTVPVEVLFGILRNYTDKYLTCLQKFAKKKKVIVKRQPEINAFNL 230
Query: 201 FLKFKDCISL-----------------SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L SL + ++++ GWC+ R + ++EM + GF
Sbjct: 231 LLDALCKCSLVEDAEALLKKVKKKLKPDANTYNIMFFGWCRVRNPGRGMRVLEEMIELGF 290
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG---CKPSVITCTIVMHALEKAKQIYE 300
PD +Y I +C+ ++ + M+ KG P+ T I++ AL ++ E
Sbjct: 291 DPDNFTYNTAIASFCKAGMLKEACELFEFMRTKGSALSSPTAKTYAIMIVALVNNGRMEE 350
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
K E M CL D S Y MI CV + A +++
Sbjct: 351 CFKFLEYMIKSGCLPDVS----------------TYKEMIEGICVAGKVQEAYMFLEEMG 394
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ PD T+ LK+ C K D + + M E+ G +P T+ ML
Sbjct: 395 KKGYPPDIVTYNCFLKVLCDNKMSDDALRHCDRMIEV---GCLPSVQTYNML 443
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 81/194 (41%), Gaps = 19/194 (9%)
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
S +++ + ++I + + K ++ M + G PD +Y IE C ++
Sbjct: 329 SPTAKTYAIMIVALVNNGRMEECFKFLEYMIKSGCLPDVSTYKEMIEGICVAGKVQEAYM 388
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS 328
L+EM +KG P ++T + L K +AL+ ++M CL
Sbjct: 389 FLEEMGKKGYPPDIVTYNCFLKVLCDNKMSDDALRHCDRMIEVGCLPSVQ---------- 438
Query: 329 KAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
YN +IS ++ A ++ +++ C D +++ ++ ++ D
Sbjct: 439 ------TYNMLISMFFEMNDHNGAFQIWLEMDRYGCTRDVDSYCIMIEGLFGCNKVGDAC 492
Query: 389 LVLNLMREMLSKGI 402
L L+ E+++KG+
Sbjct: 493 L---LLEEVVNKGM 503
>gi|356561933|ref|XP_003549231.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g62470, mitochondrial-like [Glycine max]
Length = 510
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/350 (22%), Positives = 148/350 (42%), Gaps = 55/350 (15%)
Query: 87 HETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKF 146
H+ VD + R P A + FC A + G+ H TYN M+ LG++++F
Sbjct: 66 HDLVVDVLQRFKHARKP-------AFRFFC--XAGKRPGFAHDSRTYNFMMCVLGRTRQF 116
Query: 147 GLMWELVKEIDELSNGYVSLAAMSTVMR-----------------------RLDTRAMSV 183
M ++E+ E G +++ S ++ ++ ++
Sbjct: 117 ETMVAKLEEMGE--KGLLTMETFSIAIKAFAEAKQRKKEVGIFDLMKKYGFKVGVDVINF 174
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+D+L A VF K KD + S Q + +L+ GWC+ + A + EM GF
Sbjct: 175 LLDSLSTAKLGKEAQAVFEKLKDRFTPSLQTYTILLSGWCRLKNLLEAGRVWNEMIDRGF 234
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+PD V++ +E + K + M+ KG P+V + TI++ K K + EA++
Sbjct: 235 NPDIVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRSYTIMIQDFCKQKLMGEAIE 294
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRF-LIYNTMISSACVRSEEGNALKLRQKIEED 362
++ M C D + Y+ LI + + ++Y+ L +++ E
Sbjct: 295 YFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYS-----------------LLKEMRER 337
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C PD T+ +K+ + D + + ++M+ GI P T+ M+
Sbjct: 338 GCPPDGRTYNALIKLMTSQHMPDDA---VRIYKKMIQSGIKPTIHTYNMI 384
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 65/149 (43%), Gaps = 1/149 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ R+ ++++ K+ + A + F D + ++ LI G+ + +K D +
Sbjct: 272 NVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSLL 331
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KEM + G PDG +Y I+ + K+M + G KP++ T ++M +
Sbjct: 332 KEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYFVT 391
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
K +++++M C D + Y I
Sbjct: 392 KNYEMGHEIWDEMHPKGCCPDDNSYIVYI 420
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 82/205 (40%), Gaps = 26/205 (12%)
Query: 88 ETDVDKVSEILRKRYPSPD--KVVEALKCFC----------FTWAKTQTGYMHTPETYNA 135
++D K+ EI++ + PSP+ ++ FC + G Y
Sbjct: 254 KSDAIKLFEIMKAKGPSPNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTC 313
Query: 136 MVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVA 195
++ G+ KK +++ L+KE+ E D R + L+ + ++
Sbjct: 314 LITGFGRQKKMDMVYSLLKEMRERGC-------------PPDGRTYNALIKLMTSQHMPD 360
Query: 196 HAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI 254
A +++ K + I + +++++ + T+ + + EM G PD SY +I
Sbjct: 361 DAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTKNYEMGHEIWDEMHPKGCCPDDNSYIVYI 420
Query: 255 EHYCREKDFRKVDYTLKEMQEKGCK 279
R+ + L+EM EKG K
Sbjct: 421 GGLIRQDRSGEACKYLEEMLEKGMK 445
>gi|255542990|ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548519|gb|EEF50010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 511
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 164/390 (42%), Gaps = 93/390 (23%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE-----------------LSNGYVSLAAM----- 169
TYN +++ L K ++F + W+L+ ++D+ +S G+ A
Sbjct: 105 TYNLIIDILSKVRQFDVSWQLIIQMDQNNLQPNSHTFLILIRRLISAGFTRQAIRAFDDM 164
Query: 170 -STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS 228
S + ++ L+DTL K + A +VF K K + +I+ VLI+GWCK +
Sbjct: 165 ESFIAETVNQTHFCFLLDTLCKYGYIKVAVEVFNKRKFRFLPNVRIYTVLIYGWCKIGRI 224
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----------EKDFRKVDYTLKEMQEKGC 278
D A++ ++EM + G + V+Y ++ CR E+ K D EM++KG
Sbjct: 225 DMAERFIREMDEMGIEANVVTYNVLLDGICRRAKLQPEGRFERTIMKADKVFDEMRQKGI 284
Query: 279 KPSVITCTIVMHALEKAKQ---IYEALKVYEKMKSDDCLTDTSFYSSLIF---------- 325
+P V + +I++H +A + + LK+ E+M C T ++ S L
Sbjct: 285 EPDVTSFSILLHVYSRAHKPQLTVDKLKLMEEMGI--CPTVATYTSVLKCLCSCGRIDDA 342
Query: 326 --ILSKAVRFLI------YNTMISSACVRSEEGNALKLRQKI-EEDSCKPDCETHARSLK 376
+L + VR + YN R + ALKL +KI +E+ C P T+ L
Sbjct: 343 EELLEQMVRNGVSPNAATYNCFFKEYRGRKDPETALKLYRKIRQENLCDPSVHTYNILLG 402
Query: 377 MCCHKKRMKDGMLVLNLMR--------------------------------EMLSKGIVP 404
M R + N +R EM+ KG++P
Sbjct: 403 MFMKLNRFNIVNEIWNDLRSSGSGPDLDSYTLLVHGLCEKQKWQKACQFFVEMIEKGLLP 462
Query: 405 QESTHKMLAEELEKKSLGNA----KERIDE 430
Q++T +ML L + ++ K+++DE
Sbjct: 463 QKATFEMLYAGLIQSNMLRTWRRLKKKLDE 492
>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
gi|224030695|gb|ACN34423.1| unknown [Zea mays]
gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
Length = 756
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 137/289 (47%), Gaps = 38/289 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +++ L K +L+KE++ SNG STV + ++D L K+
Sbjct: 442 TYNILIDHLCSMGKLVNALDLLKEME--SNG----CPRSTV-------TYNTIIDALCKQ 488
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A +VF + IS S+ F+ LI G CK ++ D A + +++M + G P ++Y
Sbjct: 489 MRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITY 548
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ HYC++ D +K L+ M G + V+T +++ L KA + ALK+ M+
Sbjct: 549 NSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMR- 607
Query: 311 DDCLTDTSFYSSLIFILSKAVRFL--IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
K +R YN +I S R+ +AL L +++ E PD
Sbjct: 608 -----------------IKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDA 650
Query: 369 ETHARSLK-MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
T+ + +C +K+ + + EM++KG +P+ S+ +MLAE L
Sbjct: 651 LTYKIVFRGLCRGGGPIKEA---FDFLVEMVNKGFMPEFSSFRMLAEGL 696
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 116/266 (43%), Gaps = 21/266 (7%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D + LM ++ S+ A +V K + +++ +VLI+G+CK + + A +
Sbjct: 229 DETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYI 288
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++ GF PD V+Y F+ C+ + M ++G P V T V++ L K
Sbjct: 289 QKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKN 348
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ EA + +M CL DT+ +NT+I + C ++ AL L
Sbjct: 349 GELDEAKGIVNQMVDRGCLPDTT----------------TFNTLIVALCSQNRLEEALDL 392
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+++ PD T + C ++ D L + L EM S G P E T+ +L +
Sbjct: 393 ARELTVKGLSPDVYTFNILINALC---KVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDH 449
Query: 416 L-EKKSLGNAKERIDELLTHATEQRT 440
L L NA + + E+ ++ + T
Sbjct: 450 LCSMGKLVNALDLLKEMESNGCPRST 475
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 109/260 (41%), Gaps = 27/260 (10%)
Query: 161 NGYVS--LAAMSTVMRRL---DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQ 213
NG+VS L M +++ D + +++ L K + A + + D C+ +
Sbjct: 313 NGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLP-DTT 371
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F+ LI C + + A +E+ G SPD ++ I C+ D +EM
Sbjct: 372 TFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEM 431
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+ GC P +T I++ L ++ AL + ++M+S+ C T Y+++I L K +R
Sbjct: 432 KSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRI 491
Query: 334 -------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
+ +NT+I C +A +L +++ ++ +P T+
Sbjct: 492 EEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSI 551
Query: 375 LKMCCHKKRMKDGMLVLNLM 394
L C + +K +L M
Sbjct: 552 LTHYCKQGDLKKAADILETM 571
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/394 (19%), Positives = 144/394 (36%), Gaps = 98/394 (24%)
Query: 89 TDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGL 148
+D D++ LR++ P+ ++ L A + + + Y +++ LG + F L
Sbjct: 54 SDQDRLLTALREQ-ADPEAALQMLNS-----ALAREDFAPSRAVYEEIIQKLGTAGAFDL 107
Query: 149 MWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208
M LV+E MRR A + ++ + V+ +Y +F D +
Sbjct: 108 MEGLVRE-----------------MRREGHEAGAGVVRSFVE------SYARLRRFDDAV 144
Query: 209 SL------------SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256
L + +++ L++ + + + EM G PD V+ I+
Sbjct: 145 DLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKA 204
Query: 257 YCREKDFRKVDYTLKEMQ-----------------------------------EKGCKPS 281
CR R L+EM E GC P+
Sbjct: 205 LCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPT 264
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------SKAVRFL- 334
+T ++++ K ++ +AL +K +D D Y++ + L S A++ +
Sbjct: 265 RVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMD 324
Query: 335 ------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
YNT+I+ E A + ++ + C PD T + C +
Sbjct: 325 LMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQN 384
Query: 383 RMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
R+++ L+L RE+ KG+ P T +L L
Sbjct: 385 RLEEA---LDLARELTVKGLSPDVYTFNILINAL 415
>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
Length = 657
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 133/314 (42%), Gaps = 37/314 (11%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA G+ HT TY M+ LGK+++F +M +++E+ ++ L
Sbjct: 217 FRWATASGGFTHTTITYCKMLHILGKTRQFEMMVAIIQEMGKVGA--------------L 262
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
A V + + + +A VF L K+ + F+ L+ A++
Sbjct: 263 SMDAFKVAIKSFAAAGEIKNAVGVFELMKKNGFDDGVESFNCLLVALANEGLGREARQVF 322
Query: 236 KEMFQHG-FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+M HG +SPD SYT + +C ++ + EM EKG KP V+ ++ L +
Sbjct: 323 DKM--HGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLR 380
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
++ EALK++E MK+ Y +I C R + A++
Sbjct: 381 GQRRPEALKMFELMKAK----------------GPPPNVWTYTMLIRDHCKRGKMDMAME 424
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
++++E C+PD T+ L + KRM V ++ EM KG P T+ L +
Sbjct: 425 CFEEMQEARCQPDVATYTCLLVGYGNAKRMDR---VTAVLEEMTQKGCPPDARTYNALIK 481
Query: 415 ELEKKSLGNAKERI 428
L + + + RI
Sbjct: 482 LLTNRKMPDDAARI 495
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +LI CK K D A + +EM + PD +YTC + Y K +V L+EM
Sbjct: 406 YTMLIRDHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMT 465
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+KGC P T ++ L K +A ++Y+KM
Sbjct: 466 QKGCPPDARTYNALIKLLTNRKMPDDAARIYKKM 499
>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like isoform 1 [Brachypodium distachyon]
gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like isoform 2 [Brachypodium distachyon]
Length = 704
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 94/388 (24%), Positives = 157/388 (40%), Gaps = 61/388 (15%)
Query: 89 TDVDKVSEI---LRKRYPSPDKVV--EALKCFCFT---------WAKTQTGYMHTPETYN 134
TDVD + + + K PD V+ LK FC W + +YN
Sbjct: 314 TDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIRNVTSYN 373
Query: 135 AMVEAL---GKSKKFGLMWELVKEIDELSNGYVSLAAM--------------------ST 171
M++ L G K +WEL+++ D LS V+ + M T
Sbjct: 374 IMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEART 433
Query: 172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDY 230
+ LD + S ++ L K + A K++ K D +S I++ LI+G+C+ K
Sbjct: 434 SGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSD 493
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A + +M ++ SP ++Y I C+ + + + +EM EKGC V T ++
Sbjct: 494 AIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIR 553
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------------- 333
L + K+I AL ++ ++ TD ++ LI L A +
Sbjct: 554 GLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCC 613
Query: 334 ---LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
+ YNT++ A L I E+ PD ++ +K C R +G+ +
Sbjct: 614 PNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQL 673
Query: 391 LNLMREMLSKGIVPQESTHKMLAEELEK 418
LN EML+ GI+P T +L + K
Sbjct: 674 LN---EMLASGIIPTAITWNILVRAVIK 698
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 21/202 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +IHG C++ D A + EM + G PD V Y ++ +C + M
Sbjct: 303 YGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMS 362
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT-DTSFYSSLIFIL------ 327
G + +V + I++ L + +A ++E ++ DD L+ D +S++I L
Sbjct: 363 VSGIR-NVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFA 421
Query: 328 SKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
+K+++ L Y++MIS C +A+KL +KI DS KP+ +
Sbjct: 422 NKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNAL 481
Query: 375 LKMCCHKKRMKDGMLVLNLMRE 396
+ C + D + V + M E
Sbjct: 482 INGFCQASKFSDAIRVYSQMAE 503
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/234 (19%), Positives = 95/234 (40%), Gaps = 25/234 (10%)
Query: 178 TRAMSVLMDTLVK--RNSVAHAYKVFLK---FKDCISLSSQIFDVLIHGWCKTRKSDYAQ 232
R+ + L+D V+ R S A A+ L F I+ + Q +++++ C D A
Sbjct: 120 VRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVRGDLDRAV 179
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ G +PD ++Y+ + + + Y L EM +P + ++
Sbjct: 180 TLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGC 239
Query: 293 EKAKQIYEALKVYEKMKSDDCLT-DTSFYSSLIFILSKAVRF------------------ 333
+ + +A++V+E++ D + + + Y+ ++ L K F
Sbjct: 240 FRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPD 299
Query: 334 -LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
+ Y TMI C ++ +A ++ ++ + PD + LK CH R+ +
Sbjct: 300 MITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGE 353
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 68/150 (45%), Gaps = 2/150 (1%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D S LM VK N + +A + + + + ++ L+ G + + + A +
Sbjct: 193 DRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVW 252
Query: 236 KEMFQH-GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+++ + G SP+ +Y ++ C+ F++ + M +P +IT ++H L +
Sbjct: 253 EQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCR 312
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ + A +VY +M + D Y+SL+
Sbjct: 313 STDVDSAARVYSEMIKTGLVPDVVIYNSLL 342
>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
Length = 700
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 88/376 (23%), Positives = 164/376 (43%), Gaps = 59/376 (15%)
Query: 104 SPDKVVEALKCFC--------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE 155
+PD VV+ L F WA Q GY H + Y M++ LG++K F + L+++
Sbjct: 182 NPDAVVKVLNLQTDAQNALRFFQWADKQEGYDHNTDAYFTMIDILGRAKMFTELQSLLQK 241
Query: 156 ID----ELSNGYVSLAAMS--------------TVMRRL-------DTRAMSVLMDTLVK 190
+ E++ + MS +M+ + DT SVL+ +LVK
Sbjct: 242 MQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLV-SLVK 300
Query: 191 RNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A +F + + +S ++ + +I + K + A K + +M Q+ ++PD V+
Sbjct: 301 NKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVT 360
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
YT I C+ K + L++M+E GC+P++ T ++ L ++ EAL++ M+
Sbjct: 361 YTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLME 420
Query: 310 SDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEG 350
+ Y+ L L K R + YNT+++ C S
Sbjct: 421 QGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLI 480
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A+ + +++ ++ C PD T+ ++ ++ D L + EM +KG T
Sbjct: 481 EAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPD---ALRMHDEMENKGYDVNFDTLN 537
Query: 411 MLAEELEKKSLGNAKE 426
+LA L + +GN K+
Sbjct: 538 ILARGLAR--VGNHKD 551
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 107/245 (43%), Gaps = 29/245 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +L HG CK R+ D A++ E G P+ V+Y + YCR + LKEM
Sbjct: 431 YTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMH 490
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM--KSDDCLTDT------------SFY 320
+ C P +T T ++ L + Q+ +AL+++++M K D DT +
Sbjct: 491 QNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHK 550
Query: 321 SSLIFILSKAVRFLIYNT---MISSACVRS----EEGNALKLRQKIEEDSCKPDCETHAR 373
+ IF R Y+ ++ C+ + EE AL L + I + P+ T+
Sbjct: 551 DASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQAL-LYEMINK-GYSPNLTTYNT 608
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
+K C + R+ D +LN M E GI P ++ +L +E + + D+L
Sbjct: 609 MIKGFCRQGRLDDADAMLNFMIE---NGIGPDTGSYNILIKEFHNQG---RTQDADQLYA 662
Query: 434 HATEQ 438
A E+
Sbjct: 663 TALER 667
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDELSN-GYVSLAAMSTVMRRLDTRAMSVLM 185
TP+ TY +++ L + + + + ++ DE+ N GY ++ +++L
Sbjct: 495 TPDHVTYTTLIQGLVQGNQ---LPDALRMHDEMENKGY-----------DVNFDTLNILA 540
Query: 186 DTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
L + + A + + KD + S+ + + IH + + AQ + EM G+S
Sbjct: 541 RGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYS 600
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P+ +Y I+ +CR+ D L M E G P + I++ + +A ++
Sbjct: 601 PNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQL 660
Query: 305 Y 305
Y
Sbjct: 661 Y 661
>gi|147827256|emb|CAN64312.1| hypothetical protein VITISV_027954 [Vitis vinifera]
Length = 655
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 150/338 (44%), Gaps = 59/338 (17%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F W +TQ G+ HT +TYN M++ LGK +F L+W L++ + Y + V +R
Sbjct: 310 FDWVQTQCGFNHTTDTYNGMIDILGKFFEFDLIWVLIQRMKADPVAYPNHVTFRFVFKRY 369
Query: 177 ----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCI-SLSS 212
D + S L+D L + V A ++FLK KD + +
Sbjct: 370 AAAHLVEEAMNAYYRTEEFNLRDETSYSNLIDALCEYKHVIEAEELFLKESKDLVFNDDV 429
Query: 213 QIFDVLIHGW--------CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
+I+++++ GW CK+ K A K KEM + G D V+Y I +
Sbjct: 430 KIYNIILRGWFKNGVVEECKSGKPWRAVKLYKEMKKKGIRLDVVAYNTVIRAIGLSEG-- 487
Query: 265 KVDYTL---KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
VD+++ +E +E GC+P+V+T ++ L + +I EA V+++M+ + Y
Sbjct: 488 -VDFSIRVFREXKEVGCEPNVVTYNTIIKLLCENGRIREAYGVFDQMREKGYAPNVITYH 546
Query: 322 SLIFILSKAVRFL-IYNTMISSAC---------VRSEEGNALKLR------QKIEEDSCK 365
+ K + L ++ MI+S + + G LR +K+EE C
Sbjct: 547 CFFGCIEKPKQILRTFDRMINSGVRPRMDTYVMLMKKFGRWGFLRPVFIVWKKMEEQGCS 606
Query: 366 PD-CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
PD C +A L +K M D L EML+KG+
Sbjct: 607 PDACAYNA--LIDALVQKGMVD--LARKYEEEMLAKGL 640
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 120/258 (46%), Gaps = 21/258 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+VL++ K + V AY + + K+ ++ + + +IHG+C+ K D A K ++M +
Sbjct: 46 NVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVE 105
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
+G P+ V+Y + CR + L EM+E+G +P + +M L K +I
Sbjct: 106 NGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDM 165
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
ALKV+E + DC D YS+LI L K R + AC KL +K+
Sbjct: 166 ALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGR-------LDEAC---------KLFEKMR 209
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
E+SC+PD T + C R+++ VL M + + P T+ L + L K
Sbjct: 210 ENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED---RNCTPNVITYSSLIDGLCKTG 266
Query: 421 -LGNAKERIDELLTHATE 437
+ +A+E ++ E
Sbjct: 267 QVRDAQEVFKRMIVRGIE 284
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 44/295 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR------RLDT-----RA 180
TYN ++ K K + L+KE+ E S ++ STV+ ++DT R
Sbjct: 44 TYNVLINGFCKVHKVHRAYLLLKEMKE-SGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQ 102
Query: 181 M------------SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRK 227
M + L+ L + + AY++ + ++ + +D L+ G CKT K
Sbjct: 103 MVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGK 162
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
D A K ++ PD V+Y+ I C+ + ++M+E C+P V+T T
Sbjct: 163 IDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTA 222
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA--VR------------- 332
+M L K ++ EA +V E M+ +C + YSSLI L K VR
Sbjct: 223 LMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRG 282
Query: 333 ----FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+ YN++I C+ + +AL L +++ C PD T+ + C R
Sbjct: 283 IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGR 337
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 127/313 (40%), Gaps = 35/313 (11%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
T TG + TYN +++ L K+ + E + L M D
Sbjct: 314 TATGCLPDIITYNTLIDGLCKTGR-------APEANRL------FGDMKAKFCNPDVITY 360
Query: 182 SVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
S L+ K + A +F K + F L+ G+C D A++ ++EM
Sbjct: 361 SCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVA 420
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
SPD +YT ++ +C+ + LK M ++GC+P+V+T T ++ A +A +
Sbjct: 421 SDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTV 480
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A K+ E+M + + + Y ++I C + A K+ +++E
Sbjct: 481 AYKLLEEMVGNGVQPNV----------------ITYRSLIGGFCGTGDLEEARKMLERLE 524
Query: 361 ED-SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EK 418
D +CK D + + C RM L L+ + G P+ + L L +
Sbjct: 525 RDENCKADMFAYRVMMDGLCRTGRMS---AALELLEAIKQSGTPPRHDIYVALIRGLCQG 581
Query: 419 KSLGNAKERIDEL 431
K LG A E ++E+
Sbjct: 582 KELGKAMEVLEEM 594
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 23/251 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
S L+D L K V A +VF + I + ++ LIHG+C T D A M+EM
Sbjct: 256 SSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTA 315
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD ++Y I+ C+ + + +M+ K C P VIT + ++ K ++I
Sbjct: 316 TGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDM 375
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI------FILSKAVRFL-------------IYNTMIS 341
A +++ M L D +S+L+ ++ A R L Y +++
Sbjct: 376 ARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVD 435
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C A ++ +++ + C+P+ T+ + C R + L+ EM+ G
Sbjct: 436 GFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFC---RAGKPTVAYKLLEEMVGNG 492
Query: 402 IVPQESTHKML 412
+ P T++ L
Sbjct: 493 VQPNVITYRSL 503
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 87/199 (43%), Gaps = 19/199 (9%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
++I G CK + A +M + G P+ +Y I +C+ + LKEM+E
Sbjct: 12 IMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKES 71
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILSKA 330
G P+V+T + V+H + ++ A K++ +M + C+ + Y++L+ ++ +A
Sbjct: 72 GLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEA 131
Query: 331 VRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
L Y+T+++ C + ALK+ + C PD ++ +
Sbjct: 132 YELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAG 191
Query: 378 CCHKKRMKDGMLVLNLMRE 396
C R+ + + MRE
Sbjct: 192 LCKTGRLDEACKLFEKMRE 210
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 22/162 (13%)
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------------F 325
C+ +VIT TI++ L KA ++ EA + KMK + + Y+ LI +
Sbjct: 3 CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 62
Query: 326 ILSK-------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+L K A + Y+T+I C +++ A KL +++ E+ C P+ T+ L
Sbjct: 63 LLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 122
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C M + +L+ MRE +G+ P + ++ L L K
Sbjct: 123 CRNGLMDEAYELLDEMRE---RGLQPDKFSYDTLMAGLCKTG 161
>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 148/354 (41%), Gaps = 71/354 (20%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+TG+ TY +++ + KS + L EL+++++E +LD
Sbjct: 204 VETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERK-------------IKLDAVKY 250
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAM----- 235
S+++D L K S+ +A+ +F + + I+ LI G+C + D K +
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK 310
Query: 236 ------------------------------KEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
KEM Q G SPD V+YT I+ +C+E K
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDK 370
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
++ L M KGC P++ T I+++ KA I + L+++ KM + DT Y++LI
Sbjct: 371 ANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQ 430
Query: 326 -----------------ILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
++S+ VR + Y ++ C E AL++ +KIE+ +
Sbjct: 431 GFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMEL 490
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
D + + C+ ++ D +L + KG+ P T+ ++ L KK
Sbjct: 491 DIGIYNIIIHGMCNASKVDDAW---DLFCSLPLKGVKPDVKTYNIMIGGLCKKG 541
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 89/207 (42%), Gaps = 22/207 (10%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
++I+ C+ RK A AM ++ + G+ PD V+++ I C E + + M E
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEM 171
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI- 335
G KP++IT +++ L ++ +A+ + ++M + Y ++ ++ K+ + +
Sbjct: 172 GHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA 231
Query: 336 ------------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
Y+ +I C NA L ++E K D + ++
Sbjct: 232 MELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRG 291
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVP 404
C+ R DG L+R+M+ + I P
Sbjct: 292 FCYAGRWDDGA---KLLRDMIKRKITP 315
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 87/209 (41%), Gaps = 18/209 (8%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL--DTRAMS 182
G + TYN +++ + K + EL +E+ V RR+ D +
Sbjct: 417 GVVADTVTYNTLIQGFCELGKLEVAKELFQEM---------------VSRRVRPDIVSYK 461
Query: 183 VLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+L+D L A ++F K K + L I++++IHG C K D A +
Sbjct: 462 ILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK 521
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD +Y I C++ + D ++M+E G P+ T I++ A ++
Sbjct: 522 GVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKS 581
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
K+ E++K D S ++ +LS
Sbjct: 582 AKLIEEIKRCGFSVDASTVKMVVDMLSDG 610
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 77/388 (19%), Positives = 153/388 (39%), Gaps = 51/388 (13%)
Query: 71 KLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQ------- 123
K++ + R+ S + + VD E+ R R P P ++++ + F Q
Sbjct: 37 KVSYRERLRSGIVDIKEDDAVDLFQEMTRSR-PRP-RLIDFSRLFSVVARTKQYDLVLDL 94
Query: 124 ------TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD 177
G H T + M+ + +K L + + +I +L GY D
Sbjct: 95 CKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKL--GYEP-----------D 141
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMK 236
T S L++ L V+ A ++ + + + I + L++G C K A +
Sbjct: 142 TVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLID 201
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M + GF P+ V+Y ++ C+ L++M+E+ K + +I++ L K
Sbjct: 202 RMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDG 261
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
+ A ++ +M+ F + +I IY T+I C + KL
Sbjct: 262 SLDNAFNLFNEMEI------KGFKADII----------IYTTLIRGFCYAGRWDDGAKLL 305
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ + + PD + + + ++++ L +EM+ +GI P T+ L +
Sbjct: 306 RDMIKRKITPDVVAFSALIDCFVKEGKLREAE---ELHKEMIQRGISPDTVTYTSLIDGF 362
Query: 417 EKKS-LGNAKERIDELLTH--ATEQRTF 441
K++ L A +D +++ RTF
Sbjct: 363 CKENQLDKANHMLDLMVSKGCGPNIRTF 390
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 142/316 (44%), Gaps = 32/316 (10%)
Query: 119 WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWEL----VKEIDELSNGYVSLAAMSTVMR 174
W Y H+ +Y +++ L + G+++++ +K D + + L + +
Sbjct: 112 WISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNK 171
Query: 175 --------RLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKT 225
+L + L+++L + V +V+++ +D + + ++ +++G+CK
Sbjct: 172 DERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKL 231
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
+ A + + ++ + G PD +YT I YC+ KD EM KGC+ + +
Sbjct: 232 GNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAY 291
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
T ++H L A++I EA+ ++ KMK D+C VR Y +I S C
Sbjct: 292 THLIHGLCVARRIDEAMDLFVKMKDDECFP--------------TVR--TYTVLIKSLCG 335
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ AL L +++EE KP+ T+ + C + + + L+ +ML KG++P
Sbjct: 336 SERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAR---ELLGQMLEKGLMPN 392
Query: 406 ESTHKMLAEELEKKSL 421
T+ L K+ +
Sbjct: 393 VITYNALINGYCKRGM 408
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 119/287 (41%), Gaps = 41/287 (14%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQ 232
R + A + L+ L + A +F+K KD C + + + VLI C + + A
Sbjct: 285 RRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFP-TVRTYTVLIKSLCGSERKSEAL 343
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+KEM + G P+ +YT I+ C + F K L +M EKG P+VIT +++
Sbjct: 344 NLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGY 403
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------------FILSKAVR------FL 334
K I +A+ V E M+S +T Y+ LI +L+K + +
Sbjct: 404 CKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVV 463
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN++I C +A +L + + PD T+ + C KR+++ +L
Sbjct: 464 TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEA---CDLF 520
Query: 395 REMLSKGIVPQ-----------------ESTHKMLAEELEKKSLGNA 424
+ KG+ P + H ML + L K L N+
Sbjct: 521 DSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNS 567
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 138/332 (41%), Gaps = 46/332 (13%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMS 170
+TG TY ++++L KF EL+ ++ E L NGY +
Sbjct: 351 ETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIE 410
Query: 171 TVM--------RRL--DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLI 219
+ R+L +TR + L+ K N V A V K + L + ++ LI
Sbjct: 411 DAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLI 469
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
G C++ D A + + M G PD +YT I+ C+ K + +++KG
Sbjct: 470 DGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVN 529
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------------ 327
P+V+ T ++ KA ++ EA + EKM S +CL ++ +++LI L
Sbjct: 530 PNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLL 589
Query: 328 -SKAVRFLIYNTMISSACV------RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
K V+ + T+ + + + +A Q++ KPD T+ ++ C
Sbjct: 590 EEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCR 649
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ R+ D ++M +M G+ P T+ L
Sbjct: 650 EGRLLDAE---DMMAKMRENGVSPDLFTYSSL 678
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 121/304 (39%), Gaps = 35/304 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMSTVMRRLDTR 179
TY +M+++L KSK+ +L +++ L +GY + L+
Sbjct: 499 TYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKM 558
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF-----------DVLIHGWCKTRKS 228
+ + N++ H K K+ L ++ +LIH K
Sbjct: 559 LSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDF 618
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D+A ++M G PD +YT FI+ YCRE + + +M+E G P + T + +
Sbjct: 619 DHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSL 678
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSA---CV 345
+ Q A V ++M+ C + SLI K + + Y S C
Sbjct: 679 IKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLI----KHLLEMKYGKQKGSEPELCA 734
Query: 346 RS---EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
S E ++L +K+ E S P+ +++ + + C ++ V + M+ ++GI
Sbjct: 735 MSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQR--NEGI 792
Query: 403 VPQE 406
P E
Sbjct: 793 SPSE 796
>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
Length = 489
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 147/348 (42%), Gaps = 58/348 (16%)
Query: 117 FTWAKTQTGYM--HTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR 174
F WA+ Q + HT +Y+ +V +L K +++ LMW++V + + G ++ +MR
Sbjct: 91 FEWARKQKRGVCAHTVRSYHTVVTSLAKIRQYQLMWDVVAIMRK--EGVANVETFGIIMR 148
Query: 175 RL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211
+ + A + L+ L K +V A ++F K + S
Sbjct: 149 KYARAQKLDEAVYTFNVMEKYGVAHNLAAFNSLLSALCKSKNVRKAQEIFDKMNNRFSPD 208
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
++ + +L+ GW + ++ +M G PD V+Y ++ C+ + ++
Sbjct: 209 AKTYSILLEGWGRAPSLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQ 268
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
+M +GC+P+ +I++H +I +A+ + M+ D + D Y++LI K
Sbjct: 269 DMSSRGCQPTTFIYSILVHTYGVDMRIEDAVAAFLDMEKDGIMPDVVVYNALITAFCKVK 328
Query: 332 RF-----------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
+F +I NT+IS + +E + R I+ CKPD
Sbjct: 329 KFENAFRVMDDMQGHGISPNSRTWNIILNTLISLG--KDDEAYRV-FRSMIKR--CKPDS 383
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+T+ +KM C +++ + V MR K +P T +L L
Sbjct: 384 DTYTMMIKMFCENDKIEMALKVWKYMR---LKQFLPSMHTFSVLINGL 428
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 13/156 (8%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G M YNA++ A K KKF + +D++ +S ++R +++
Sbjct: 309 GIMPDVVVYNALITAFCKVKKFE---NAFRVMDDMQGHGISP----------NSRTWNII 355
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
++TL+ AY+VF S + ++I +C+ K + A K K M F
Sbjct: 356 LNTLISLGKDDEAYRVFRSMIKRCKPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFL 415
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
P +++ I C + + + L++M EKG +P
Sbjct: 416 PSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRP 451
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 96/253 (37%), Gaps = 48/253 (18%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY MV+AL K+ G + E V + ++S S T T S+L+ T
Sbjct: 246 TYGIMVDALCKT---GRVEEAVCVVQDMS----SRGCQPT------TFIYSILVHTYGVD 292
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP----- 245
+ A FL KD I +++ LI +CK +K + A + M +M HG SP
Sbjct: 293 MRIEDAVAAFLDMEKDGIMPDVVVYNALITAFCKVKKFENAFRVMDDMQGHGISPNSRTW 352
Query: 246 -----------------------------DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
D +YT I+ +C K M+ K
Sbjct: 353 NIILNTLISLGKDDEAYRVFRSMIKRCKPDSDTYTMMIKMFCENDKIEMALKVWKYMRLK 412
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336
PS+ T +++++ L ++ +A + E M S + L +L K R +
Sbjct: 413 QFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVL 472
Query: 337 NTMISSACVRSEE 349
+ ++ + ++E
Sbjct: 473 DFLVEKMKILAQE 485
>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74900, mitochondrial; AltName: Full=Protein
ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
Precursor
gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
Length = 482
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 118/255 (46%), Gaps = 22/255 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
D + + ++D L K V AY++F + S+ + ++V+++GWC +++ A + +K
Sbjct: 160 DLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLK 219
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM + G +P+ +Y ++ + R R EM+++ C+ V+T T V+H A
Sbjct: 220 EMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAG 279
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------AVRF------------LIYN 337
+I A V+++M + L + Y+++I +L K V F YN
Sbjct: 280 EIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYN 339
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+I E +L Q++E + C+P+ +T+ ++ ++ L L +M
Sbjct: 340 VLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKA---LGLFEKM 396
Query: 398 LSKGIVPQESTHKML 412
S +P T+ +L
Sbjct: 397 GSGDCLPNLDTYNIL 411
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 22/198 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN M++ ++ + WE E M++ D V T+V
Sbjct: 232 TYNTMLKGFFRAGQIRHAWEFFLE-----------------MKKRDCEIDVVTYTTVVHG 274
Query: 192 NSVA----HAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
VA A VF + ++ + S ++ +I CK + A +EM + G+ P+
Sbjct: 275 FGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPN 334
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
+Y I +F + + ++ M+ +GC+P+ T +++ + ++ +AL ++E
Sbjct: 335 VTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFE 394
Query: 307 KMKSDDCLTDTSFYSSLI 324
KM S DCL + Y+ LI
Sbjct: 395 KMGSGDCLPNLDTYNILI 412
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 95/258 (36%), Gaps = 56/258 (21%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG------------------------- 242
I S + F ++ + K D A K M +HG
Sbjct: 122 IGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAY 181
Query: 243 ---------FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
FS D V+Y + +C K K LKEM E+G P++ T ++
Sbjct: 182 ELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFF 241
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF-------------ILSKAVR------FL 334
+A QI A + + +MK DC D Y++++ + + +R
Sbjct: 242 RAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVA 301
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN MI C + NA+ + +++ +P+ T+ ++ H G LM
Sbjct: 302 TYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGE---ELM 358
Query: 395 REMLSKGIVPQESTHKML 412
+ M ++G P T+ M+
Sbjct: 359 QRMENEGCEPNFQTYNMM 376
>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 138/302 (45%), Gaps = 31/302 (10%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGL-------MWELVKEIDELSNGYVSLAAMS----T 171
+ G+ HT ++++ +++ L + FG+ M + +D++ L M+
Sbjct: 113 KPGFKHTVKSHSFLLKILIPNNLFGVGEKIRISMIKACVSVDDIRFLLDFLRQMNRDDND 172
Query: 172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDY 230
+ +L R+ + L+ L + + +V+ + D I + + +++ + K
Sbjct: 173 IKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVE 232
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A + ++FQ G SPD +YT I YCR D M KGC+ + ++ T ++H
Sbjct: 233 ANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIH 292
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEG 350
L +A +I E + +++KM+ DDC Y+ +I L R L EG
Sbjct: 293 GLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNL--------------EG 338
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
+ L ++ E SC+P+ T+ + C ++++ + +LN EM+ KG+VP T+
Sbjct: 339 --MDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILN---EMMEKGLVPSVVTYN 393
Query: 411 ML 412
L
Sbjct: 394 AL 395
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 138/333 (41%), Gaps = 45/333 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVS----------LAAM 169
TY MV+A+ K +K ++ E+ E L GY L M
Sbjct: 356 TYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLM 415
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKS 228
+ R + R + L+ KR V A + K + ++ S ++ LIH CK
Sbjct: 416 ESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHF 475
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A K + + ++G PD +Y+ FI+ C+ K + ++EKG K + + T +
Sbjct: 476 DSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTAL 535
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR---------------- 332
+ KA +I EA+ + E+M S+DCL ++S Y+SLI+ + K +
Sbjct: 536 IDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGV 595
Query: 333 ---FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
Y +I + +A ++ ++ KPD T+ + C +K+
Sbjct: 596 KPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAE- 654
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKKSLG 422
+M M+ G++P T+ +L E+ L
Sbjct: 655 --GMMARMIEAGVMPDSLTYTLLISAYERLGLA 685
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 121/279 (43%), Gaps = 25/279 (8%)
Query: 157 DELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK--DCISLSSQI 214
+++++ Y M R + + + ++ L + + +F K + DC + +
Sbjct: 263 NDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYP-TVRT 321
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ V+IH ++ EM + P+ +YT ++ C+E+ + L EM
Sbjct: 322 YTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMM 381
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
EKG PSV+T ++ + +I AL++ M+S++C + Y+ LI
Sbjct: 382 EKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVH 441
Query: 325 ---FILSKAVR------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+LSK + + YN++I C +A KL ++E+ PD T++ +
Sbjct: 442 KAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFI 501
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
C KRM++ + N ++E KGI E + L +
Sbjct: 502 DTLCKSKRMEEACDLFNSLKE---KGIKANEVMYTALID 537
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +LI + D+A + +M G PD +YT FI YC + ++ + + M
Sbjct: 602 YTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMI 661
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
E G P +T T+++ A E+ Y+A V ++M C +++LI+ KA FL
Sbjct: 662 EAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNNLIWY--KASPFL 719
Query: 335 I 335
+
Sbjct: 720 M 720
>gi|357114607|ref|XP_003559090.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Brachypodium distachyon]
Length = 486
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/348 (21%), Positives = 145/348 (41%), Gaps = 58/348 (16%)
Query: 117 FTWAKTQ--TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR 174
F WA+ Q G HT +Y+ +V +L K +++ LMW++V + G V++ +MR
Sbjct: 88 FEWARKQKRGGCNHTIRSYHTVVASLAKIRQYQLMWDVVAIMRR--EGVVNVETFGIIMR 145
Query: 175 RL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211
+ + A + L+ L K +V A ++F K +
Sbjct: 146 KYARAQKFDEAVYTFNIMEKYGVVPNLAAFNSLLGALCKSKNVRKAQEIFDKMNGRFNPD 205
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
++ + +L+ GW K ++ EM G PD V+Y ++ C+ + ++
Sbjct: 206 AKTYSILLEGWGKAPNLPKMREVYSEMLDAGCQPDIVTYGIMVDSLCKTGRVEEAVLVVQ 265
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
+M +GC+P+ ++++H +I +A+ + M+ D + D Y++L+ K
Sbjct: 266 DMSSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDVVVYNALVTAFCKVK 325
Query: 332 RF-----------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
+F +I N +IS + +E + R+ I+ C+PD
Sbjct: 326 KFENAFRVMDDMEGHGIAPNSRTWNIILNKLISLG--KDDEAYRV-FRRMIKR--CQPDS 380
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+T+ +KM C ++ + V MR K +P T +L L
Sbjct: 381 DTYTMMIKMFCENDNVEMALKVWKYMR---LKQFLPSMHTFSVLINGL 425
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
YNA+V A K KKF N + + M ++R +++++ L+
Sbjct: 313 VYNALVTAFCKVKKF-------------ENAFRVMDDMEGHGIAPNSRTWNIILNKLISL 359
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
AY+VF + S + ++I +C+ + A K K M F P +++
Sbjct: 360 GKDDEAYRVFRRMIKRCQPDSDTYTMMIKMFCENDNVEMALKVWKYMRLKQFLPSMHTFS 419
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
I C + + + L++M EKG +P
Sbjct: 420 VLINGLCDKGEVSQACVLLEDMIEKGIRP 448
>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 453
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 118/255 (46%), Gaps = 22/255 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
D + + ++D L K V AY++F + S+ + ++V+++GWC +++ A + +K
Sbjct: 160 DLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLK 219
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM + G +P+ +Y ++ + R R EM+++ C+ V+T T V+H A
Sbjct: 220 EMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAG 279
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------AVRF------------LIYN 337
+I A V+++M + L + Y+++I +L K V F YN
Sbjct: 280 EIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYN 339
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+I E +L Q++E + C+P+ +T+ ++ ++ L L +M
Sbjct: 340 VLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKA---LGLFEKM 396
Query: 398 LSKGIVPQESTHKML 412
S +P T+ +L
Sbjct: 397 GSGDCLPNLDTYNIL 411
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 22/198 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN M++ ++ + WE E M++ D V T+V
Sbjct: 232 TYNTMLKGFFRAGQIRHAWEFFLE-----------------MKKRDCEIDVVTYTTVVHG 274
Query: 192 NSVA----HAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
VA A VF + ++ + S ++ +I CK + A +EM + G+ P+
Sbjct: 275 FGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPN 334
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
+Y I +F + + ++ M+ +GC+P+ T +++ + ++ +AL ++E
Sbjct: 335 VTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFE 394
Query: 307 KMKSDDCLTDTSFYSSLI 324
KM S DCL + Y+ LI
Sbjct: 395 KMGSGDCLPNLDTYNILI 412
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 95/258 (36%), Gaps = 56/258 (21%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG------------------------- 242
I S + F ++ + K D A K M +HG
Sbjct: 122 IGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAY 181
Query: 243 ---------FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
FS D V+Y + +C K K LKEM E+G P++ T ++
Sbjct: 182 ELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFF 241
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF-------------ILSKAVR------FL 334
+A QI A + + +MK DC D Y++++ + + +R
Sbjct: 242 RAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVA 301
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN MI C + NA+ + +++ +P+ T+ ++ H G LM
Sbjct: 302 TYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGE---ELM 358
Query: 395 REMLSKGIVPQESTHKML 412
+ M ++G P T+ M+
Sbjct: 359 QRMENEGCEPNFQTYNMM 376
>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 915
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 143/316 (45%), Gaps = 32/316 (10%)
Query: 119 WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWE----LVKEIDELSNGYVSLAAMSTVMR 174
W Y H+ +Y +++ L + G++++ ++K D +++ L + +
Sbjct: 112 WISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVADTLFVLDLCRKMNK 171
Query: 175 --------RLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKT 225
+L + L+++L + V +V+++ +D + + ++ +++G+CK
Sbjct: 172 DESFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKV 231
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
+ A + + + + G PD +YT I YC+ KD KEM KGC+ + +
Sbjct: 232 GNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAY 291
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
T ++H L ++I EA+ ++ KMK DDC VR Y +I + C
Sbjct: 292 THLIHGLCVERRIDEAMDLFVKMKDDDCYP--------------TVR--TYTVLIKALCG 335
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ AL L +++EE KP+ T+ + C + +++ L+ +ML KG++P
Sbjct: 336 SERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKAR---ELLGQMLEKGLMPN 392
Query: 406 ESTHKMLAEELEKKSL 421
T+ L K+ +
Sbjct: 393 VITYNALINGYCKRGM 408
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 133/326 (40%), Gaps = 32/326 (9%)
Query: 117 FTWAKTQTGY-----MHTPETYNAMVEALGKSKKFGLMWELVK---EIDELSNGYVSLAA 168
+T+ K GY + Y +M+ G F L+ + +L + +
Sbjct: 219 YTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKE 278
Query: 169 MSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTR 226
M R + A + L+ L + A +F+K KD C + + + VLI C +
Sbjct: 279 MPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYP-TVRTYTVLIKALCGSE 337
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
+ A +KEM + G P+ +YT I+ C + K L +M EKG P+VIT
Sbjct: 338 RKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYN 397
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------------FILSKAVR-- 332
+++ K I +AL V E M+S + +T Y+ LI +L+K +
Sbjct: 398 ALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKMLERK 457
Query: 333 ----FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
+ YN++I C +A +L + + PD T+ + C KR+++
Sbjct: 458 VLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEA- 516
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAE 414
+L + K ++P + L +
Sbjct: 517 --CDLFDSLEQKDVIPNVVMYTALID 540
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 131/305 (42%), Gaps = 35/305 (11%)
Query: 138 EALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDT 187
E LG+ + GLM ++ + L NGY + + R +TR + L+
Sbjct: 379 ELLGQMLEKGLMPNVIT-YNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKG 437
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
KRN V A V K + L + ++ LI G C++ D A + + M G PD
Sbjct: 438 YCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPD 496
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
+YT I+ C+ K + +++K P+V+ T ++ KA ++ EA + E
Sbjct: 497 PWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLE 556
Query: 307 KMKSDDCLTDTSFYSSLIFIL-------------SKAVRFLIYNTMISSACV------RS 347
KM S +CL ++ +++LI L K V+ + T+ + +
Sbjct: 557 KMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDG 616
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
+ +A + Q++ KPD T+ ++ C + R++D ++ M+E G+ P
Sbjct: 617 DFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKE---NGVSPDLF 673
Query: 408 THKML 412
T+ L
Sbjct: 674 TYSSL 678
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 126/308 (40%), Gaps = 29/308 (9%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMSTV 172
G + P TY +M+++L KSK+ +L +++ L +GY ++
Sbjct: 492 GLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEA 551
Query: 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF-----------DVLIHG 221
L+ + + N++ H K K+ L ++ +LIH
Sbjct: 552 HLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHR 611
Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
K D+A + ++M G PD +YT FI+ YCRE + + + +M+E G P
Sbjct: 612 LLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPD 671
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMIS 341
+ T + ++ + A V ++M C + SLI L + +++
Sbjct: 672 LFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLE-MKYGKVKGGEP 730
Query: 342 SACVRS---EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
CV S E ++L +K+ E P+ +++ + + C ++ V + M++
Sbjct: 731 GVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQ-- 788
Query: 399 SKGIVPQE 406
+GI P E
Sbjct: 789 KEGISPSE 796
>gi|242049112|ref|XP_002462300.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
gi|241925677|gb|EER98821.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
Length = 541
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 154/358 (43%), Gaps = 46/358 (12%)
Query: 109 VEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE---------- 158
V +L+ F F A G+ H PE+ + +L ++ F L+ L+ ++
Sbjct: 95 VPSLRFFLF--AAALPGFTHLPESLLILAGSLAGARLFPLLRSLLSDLPRPALSRDLFPL 152
Query: 159 LSNGYV-------SLAAMSTVMRR--LDTRA-MSVLMDTLVKRNSVAHAYKVFLKFKDCI 208
L Y ++ A S++ R L T A + L+ TL V HA F +
Sbjct: 153 LFRAYARAGLPDDAIRAFSSMERFGFLPTVADLHSLLFTLSHNGLVEHAEAFFRESPIQF 212
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
+S++ + +LI GW K + AQK EM + G PD +Y I+ CR D
Sbjct: 213 DVSAKTYTILISGWAVVAKPEKAQKLFDEMIERGVQPDVPAYNALIDALCRGGDVALAQE 272
Query: 269 TLKEMQE-KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
LK+MQ +G P T + + +K AL+V ++M++ + Y+++I +L
Sbjct: 273 QLKDMQRSRGLAPDAATYGPFLRSACASKDARAALRVLDRMRARSLTPNVFTYNAVIRLL 332
Query: 328 ------SKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
+A L YNT++++ C E AL+L +++E C P+
Sbjct: 333 CELGEVDEAYNILNEMATYGEKPDVWSYNTLLNTHCKLKEVNKALRLISRMDEGLCLPNR 392
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
++ LKM R+ + V + M + +G P +T+ ++ L K G A+E
Sbjct: 393 HSYNMILKMLIAIGRVDRAIEVWDGMEK---RGFHPGAATYAVMIHGLSCKK-GRAEE 446
>gi|224093900|ref|XP_002310039.1| predicted protein [Populus trichocarpa]
gi|222852942|gb|EEE90489.1| predicted protein [Populus trichocarpa]
Length = 507
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 134/304 (44%), Gaps = 47/304 (15%)
Query: 91 VDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMW 150
+DKV + +R + +P ++AL F FT + G+ H+ + + M+ LG+S+KF +W
Sbjct: 75 IDKVLKRVRFSHGNP---LQALDFFNFT--ADRRGFYHSSYSLDTMLYILGRSRKFDHIW 129
Query: 151 ELVKEIDELSNGYVSLAAMSTVMRRL-----------------------DTRAMSVLMDT 187
+++ +I ++ + V+ R+ DT + L+ T
Sbjct: 130 DVLIDIKRKDRNLITPRTLQVVLGRVAKVCSVRMTVESFWKFKRLVPVFDTSCFNALLRT 189
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
L + S++ A V+ K + Q F++L+ GW + +++ + MKE+ G PD
Sbjct: 190 LCQEKSMSDARNVYHHLKKGFRPNLQTFNILLSGWKSSEEAELFYEEMKEL---GVKPDI 246
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
V+Y I+ +C+ ++ K + M+E+ P VIT T ++ L Q +A + ++
Sbjct: 247 VTYNSLIDVFCKGRELEKAYGVVARMREEDILPDVITYTSIIGGLGLVGQPDKARDMLKE 306
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
MK C D + YN +I + C+ A L ++E P+
Sbjct: 307 MKEHGCYPDVA----------------AYNAVIRNYCIAKRLDAAYSLMAEMESKGMSPN 350
Query: 368 CETH 371
++
Sbjct: 351 ATSY 354
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 17/194 (8%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G+ +T+N ++ S++ L +E +KE+ + D + L
Sbjct: 209 GFRPNLQTFNILLSGWKSSEEAELFYEEMKELGV----------------KPDIVTYNSL 252
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D K + AY V + ++ L I + +I G + D A+ +KEM +HG
Sbjct: 253 IDVFCKGRELEKAYGVVARMREEDILPDVITYTSIIGGLGLVGQPDKARDMLKEMKEHGC 312
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD +Y I +YC K + EM+ KG P+ + + + + +
Sbjct: 313 YPDVAAYNAVIRNYCIAKRLDAAYSLMAEMESKGMSPNATSYNLFFRVFSWSNDLRNSWD 372
Query: 304 VYEKMKSDDCLTDT 317
Y +M CL +T
Sbjct: 373 FYGRMMDAGCLPNT 386
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I +C ++ D A M EM G SP+ SY F + D R M
Sbjct: 319 YNAVIRNYCIAKRLDAAYSLMAEMESKGMSPNATSYNLFFRVFSWSNDLRNSWDFYGRMM 378
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+ GC P+ +C ++ ++ +++ AL+++ M
Sbjct: 379 DAGCLPNTQSCMFLIKLFKRHEKVEMALQLWNDM 412
>gi|357508583|ref|XP_003624580.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499595|gb|AES80798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 585
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 146/342 (42%), Gaps = 45/342 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLA--------- 167
F WA Q GY H+ Y++M+ LGK ++F W LV+E+ G +
Sbjct: 152 FLWAGKQPGYDHSVREYHSMISVLGKMRRFDTAWALVEEMRRGKTGESIVTPQTLLIMIR 211
Query: 168 ---AMSTVMRRLDT-------------RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211
A+ V R ++T L+ L + +V A + K+ L
Sbjct: 212 KYCAVHDVGRAINTFYAFKRFNFQVGLYEFQGLLSALCRYKNVQDAEHLLFCNKNVFPLD 271
Query: 212 SQIFDVLIHGWCK-TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ F+++++GWC + A++ +EM + D VSY I Y + +V
Sbjct: 272 TKSFNIILNGWCNLIVSARNAERIWEEMSKRRIQHDVVSYASIISCYSKSSKLYRVLQLF 331
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
++M+++ P V+ +L K + + EA+ + KM+ ++ D Y+SLI L KA
Sbjct: 332 EQMKKRNITPDRKVYNAVIFSLAKNRMVKEAVNLIIKMEDNNVTPDAITYNSLIKPLCKA 391
Query: 331 VRF----LIYNTMIS---SACVRSEEG---------NALKLRQKIEEDSCKPDCETHARS 374
+ I+N M+ S +R+ +L K++E C P ET+
Sbjct: 392 RKIDEAKEIFNVMLERGISPSIRTFHAFFRILRVKEEVFELLDKMKELGCNPTIETYIML 451
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ C +++ + + N MRE GI S++ +L L
Sbjct: 452 IRKFCRWRQLDEVKRIWNAMRE---DGIGHDRSSYIVLIHGL 490
>gi|449505615|ref|XP_004162522.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g73400, mitochondrial-like [Cucumis sativus]
Length = 559
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 140/352 (39%), Gaps = 56/352 (15%)
Query: 92 DKVSEIL-RKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALG----KSKKF 146
D V++IL R R+ E L FTWA Q Y H P YN M++ L K K+F
Sbjct: 117 DLVADILHRLRFD------EKLAFRFFTWAARQENYSHEPRVYNEMIDILSSTRYKVKQF 170
Query: 147 GLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD------TLVKRNSVAHAYKV 200
++ +L+ + V + + ++R + ++ L +VKR +A+ +
Sbjct: 171 RIVCDLLDYMKRNDKNTVPVEVLFGILRNYTDKYLTCLQKFAKKKKVIVKRQPEINAFNL 230
Query: 201 FLKFKDCISL-----------------SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L SL + ++++ GWC+ R + ++EM + GF
Sbjct: 231 LLDALCKCSLVEDAEALLKKVKKKLKPDANTYNIMXFGWCRVRNPGRGMRVLEEMIELGF 290
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG---CKPSVITCTIVMHALEKAKQIYE 300
PD +Y I +C+ ++ + M+ KG P+ T I++ AL ++ E
Sbjct: 291 DPDNFTYNTAIASFCKAGMLKEACELFEFMRTKGSALSSPTAKTYAIMIVALVNNGRMEE 350
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
K E M CL D S Y MI CV + A +++
Sbjct: 351 CFKFLEYMIKSGCLPDVS----------------TYKEMIEGICVAGKVQEAYMFLEEMG 394
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ PD T+ LK+ C K D + + M E+ G +P T+ ML
Sbjct: 395 KKGYPPDIVTYNCFLKVLCDNKMSDDALRHCDRMIEV---GCLPSVQTYNML 443
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 81/194 (41%), Gaps = 19/194 (9%)
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
S +++ + ++I + + K ++ M + G PD +Y IE C ++
Sbjct: 329 SPTAKTYAIMIVALVNNGRMEECFKFLEYMIKSGCLPDVSTYKEMIEGICVAGKVQEAYM 388
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS 328
L+EM +KG P ++T + L K +AL+ ++M CL
Sbjct: 389 FLEEMGKKGYPPDIVTYNCFLKVLCDNKMSDDALRHCDRMIEVGCLPSVQ---------- 438
Query: 329 KAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
YN +IS ++ A ++ +++ C D +++ ++ ++ D
Sbjct: 439 ------TYNMLISMFFEMNDHNGAFQIWLEMDRYGCTRDVDSYCIMIEGLFGCNKVGDAC 492
Query: 389 LVLNLMREMLSKGI 402
L L+ E+++KG+
Sbjct: 493 L---LLEEVVNKGM 503
>gi|297843042|ref|XP_002889402.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
lyrata]
gi|297335244|gb|EFH65661.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
lyrata]
Length = 490
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 133/305 (43%), Gaps = 48/305 (15%)
Query: 91 VDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMW 150
+D+V + +R + +P + +E + +A + G+ H+ + + M+ LG+++KF +W
Sbjct: 73 IDRVLKRVRFSHGNPIQTLE-----FYRYAGARRGFYHSSFSLDTMLYILGRNRKFDQIW 127
Query: 151 ELVKEIDELSNGYVSLAAMSTVMRRL------------------------DTRAMSVLMD 186
E++ E +S M V+ R+ DT + L+
Sbjct: 128 EILIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPDFFDTACFNALLR 187
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
TL + S+ A V+ K Q F++L+ GW + +++ + MK G PD
Sbjct: 188 TLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAFFEEMK---GKGLKPD 244
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+Y I+ YC++++ K + +M+E+ P VIT T ++ L Q +A +V +
Sbjct: 245 VVTYNSLIDVYCKDREIEKAYKLIDKMREEDETPDVITYTTIIGGLGLIGQPDKAREVLK 304
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
+MK C D + YN I + C+ G+A KL ++ + P
Sbjct: 305 EMKEYGCYPDVA----------------AYNAAIRNYCIARRLGDADKLVDEMVKKGLSP 348
Query: 367 DCETH 371
+ T+
Sbjct: 349 NATTY 353
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D + L+D K + AYK+ K ++ I + +I G + D A++ +
Sbjct: 244 DVVTYNSLIDVYCKDREIEKAYKLIDKMREEDETPDVITYTTIIGGLGLIGQPDKAREVL 303
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KEM ++G PD +Y I +YC + D + EM +KG P+ T + L A
Sbjct: 304 KEMKEYGCYPDVAAYNAAIRNYCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLA 363
Query: 296 KQIYEALKVYEKMKSDDCLTDT 317
+ + ++YE+M + CL +T
Sbjct: 364 NDLGRSWELYERMLGNGCLPNT 385
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 44/94 (46%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ I +C R+ A K + EM + G SP+ +Y F D + + M
Sbjct: 318 YNAAIRNYCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYERML 377
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
GC P+ +C ++ ++ +++ A++++E M
Sbjct: 378 GNGCLPNTQSCMFLIKMFKRHEKVDMAMRLWEDM 411
>gi|255551140|ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544438|gb|EEF45959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 577
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/400 (22%), Positives = 163/400 (40%), Gaps = 90/400 (22%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA Q + + +N+++ ALGK K+F W LV + G VS + ++RR
Sbjct: 110 FVWADKQPEFESSTTLFNSVINALGKMKEFDSAWCLVLD----RTGLVSSDTFAILIRRY 165
Query: 177 DTRA---------------------------MSVLMDTLVKRNSVAHAYKVF---LKFKD 206
TRA + +L+D+L K V A + F +
Sbjct: 166 -TRAGMPQSAIRTFEYAISLDFICDYNCDALLEILLDSLCKEGHVRVAKEYFDSRKQLDS 224
Query: 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
C +I++++++GW ++RK +A++ EM ++ SP V+Y +E YCR + +
Sbjct: 225 CWIPHVRIYNIMLNGWFRSRKLKHAERLWLEMKKNNVSPSVVTYGTLVEGYCRMRRVERA 284
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-- 324
+ M+++G +P+ + ++ AL + + E + E + S Y+SL+
Sbjct: 285 IELVDVMRKEGIEPNALVYNPIIDALAEEGRFKEVSGMMEYFLQSESGPTISTYNSLVKG 344
Query: 325 -------FILSKAVRFLIYNTMISSACVRS------------EEGNALKLRQKIEEDSCK 365
SK ++ +I + + + EEG + L K+ E
Sbjct: 345 YCKAKDPVGASKVLKMMISRGFVPTPTTYNYFFRHFSKFGMIEEG--MNLYTKMIESGYT 402
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMR------------------------------ 395
PD T LKM C ++R+ + + MR
Sbjct: 403 PDRLTFHLLLKMLCEEERLDLAVQISKEMRSRGCDMDLATSTMLIHLFCRMHRFEEAFME 462
Query: 396 --EMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
+M+ KGIVPQ T + L +EL K+ + ++ ++++
Sbjct: 463 FEDMIQKGIVPQYLTFQRLNDELRKRGMVERARKLSDMMS 502
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 80/205 (39%), Gaps = 29/205 (14%)
Query: 132 TYNAMVEALGKSKKF----GLM--------WELVKEIDELSNGYVSL---AAMSTVMRRL 176
YN +++AL + +F G+M + + L GY S V++ +
Sbjct: 302 VYNPIIDALAEEGRFKEVSGMMEYFLQSESGPTISTYNSLVKGYCKAKDPVGASKVLKMM 361
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKT 225
+R + T N + F ++ ++L +++ F +L+ C+
Sbjct: 362 ISRG---FVPTPTTYNYFFRHFSKFGMIEEGMNLYTKMIESGYTPDRLTFHLLLKMLCEE 418
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
+ D A + KEM G D + T I +CR F + ++M +KG P +T
Sbjct: 419 ERLDLAVQISKEMRSRGCDMDLATSTMLIHLFCRMHRFEEAFMEFEDMIQKGIVPQYLTF 478
Query: 286 TIVMHALEKAKQIYEALKVYEKMKS 310
+ L K + A K+ + M S
Sbjct: 479 QRLNDELRKRGMVERARKLSDMMSS 503
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 136/299 (45%), Gaps = 34/299 (11%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
T+ GY TYN ++ L +K +L KE++E + + ST+
Sbjct: 176 TERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTI--------- 226
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+D+LVK V A ++ + K C S + + L+HG CK K D A ++ M
Sbjct: 227 ---VDSLVKSGKVDDACRLVEAMVSKGC-SPNVVTYSSLLHGLCKAGKLDEATALLQRMT 282
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ G SP+ V+Y I+ +C+ + + L+EM + GC+P+V+T T+++ A K +
Sbjct: 283 RSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAE 342
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
+A+ + E M + + +L YN+++ C + E A +L +
Sbjct: 343 DAIGLVEVM------VEKGYVPNL----------FTYNSLLDMFCKKDEVERACQLLSSM 386
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
+ C P+ ++ + C ++ +G+L L+ +MLS VP T + + + K
Sbjct: 387 IQKGCVPNVVSYNTVIAGLCKATKVHEGVL---LLEQMLSNNCVPDIVTFNTIIDAMCK 442
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 123/276 (44%), Gaps = 33/276 (11%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP TYN++V L KS++F L++E+ + +TV+ D
Sbjct: 462 TPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVI------------D 509
Query: 187 TLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L K V AYK+FL+ D ++ + ++I CK R D A ++ M ++GF P
Sbjct: 510 GLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDP 569
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
++Y I+ +C+ + K L+ + KG P V+T +I + L K ++ +A ++
Sbjct: 570 GAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELL 629
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
E M + DT + YNT++ C S +A+ L + + + C+
Sbjct: 630 ETMLRAGLVPDT----------------VTYNTLLKGFCDASRTEDAVDLFEVMRQCGCE 673
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
PD T+ + KK KD L+ + + M+ G
Sbjct: 674 PDNATYTTLVGHLVDKKSYKD--LLAEVSKSMVDTG 707
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 113/239 (47%), Gaps = 25/239 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ VL+ +CK K++ A ++ M + G+ P+ +Y ++ +C++ + + L M
Sbjct: 328 YTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMI 387
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
+KGC P+V++ V+ L KA +++E + + E+M S++C+ D ++++I + K R
Sbjct: 388 QKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVD 447
Query: 333 -----------------FLIYNTMISSAC--VRSEEGNALKLRQKIEEDSCKPDCETHAR 373
+ YN+++ C R ++ L LR+ + C PD T+
Sbjct: 448 IAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYL-LREMTRKQGCSPDIITYNT 506
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
+ C KR+ L +MLS G+ P + T+ ++ L K + + EL+
Sbjct: 507 VIDGLCKSKRVDRAY---KLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELM 562
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 23/229 (10%)
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
S ++ +I+G K+ + D A + ++EM +GF+P+ SY + +C+ + L+
Sbjct: 44 SVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLE 103
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL------IF 325
+M +GC P V++ T V++ L K Q+ EA +V +KM C + Y +L +
Sbjct: 104 QMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVG 163
Query: 326 ILSKAVRF-------------LIYNTMISSACVRSEEGNALKLRQKIEE-DSCKPDCETH 371
L AV + YN ++ C + +AL+L +++EE SC PD T+
Sbjct: 164 DLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTY 223
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ + ++ D L+ M+SKG P T+ L L K
Sbjct: 224 STIVDSLVKSGKVDDA---CRLVEAMVSKGCSPNVVTYSSLLHGLCKAG 269
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 23/225 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHG-FSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ ++HG C RK D A + KEM + G PD +Y+ ++ + ++ M
Sbjct: 187 YNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAM 246
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
KGC P+V+T + ++H L KA ++ EA + ++M C +
Sbjct: 247 VSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGC----------------SPNI 290
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ YNT+I C A L +++ + C+P+ T+ L C + +D + L
Sbjct: 291 VTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDA---IGL 347
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQ 438
+ M+ KG VP T+ L + KK + ER +LL+ ++
Sbjct: 348 VEVMVEKGYVPNLFTYNSLLDMFCKK---DEVERACQLLSSMIQK 389
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 24/223 (10%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
++ G C + A +EM + PD V+Y I + L+EM + G
Sbjct: 16 ILRGLCDAGQCSDAVLHFREMSKT-CPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNG 74
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AV 331
P+V + V+H KA ++ AL + E+M C D Y+++I L K A
Sbjct: 75 FAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEAC 134
Query: 332 R-------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
R + Y T++ C + A++L +K+ E +P+ T+ +
Sbjct: 135 RVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGL 194
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQES-THKMLAEELEKKS 420
C +++ L L +EM G P + T+ + + L K
Sbjct: 195 CSGRKLDSA---LQLFKEMEESGSCPPDVFTYSTIVDSLVKSG 234
>gi|357501403|ref|XP_003620990.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496005|gb|AES77208.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 422
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 125/263 (47%), Gaps = 47/263 (17%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR-KSDYAQKAM 235
+T +M+VL+DTL K V A +++L+ K ++ ++ F++LIHGWC R +
Sbjct: 151 NTESMNVLLDTLCKEKFVEQAREIYLELKHYVAPNAHTFNILIHGWCNIRLIPPLFNVIV 210
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
K + F+ S C + K P+V+T T +M AL KA
Sbjct: 211 KNIISTWFTT--FSMKC---------------------KLKIAPPNVVTYTTIMCALAKA 247
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--------------------LI 335
++ EAL+V E+M + C DT F++S I+ + +A R
Sbjct: 248 EKFDEALQVVERMNAVGCRPDTLFFNSFIYTMGRAGRIDDATHIFKVAMPKASVAPNTST 307
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDS-CKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN+MIS C +++ A + +++E+ CKPD +T+ L C K R D L +++
Sbjct: 308 YNSMISMFCYYAQKERAFDILKEMEKSGLCKPDIQTYYHPLIKSCFKMRKVDTWLN-DIL 366
Query: 395 REMLSKGIVPQE-STHKMLAEEL 416
+M++K + + ST+ +L L
Sbjct: 367 SDMVNKYHIGLDLSTYTLLIHGL 389
>gi|9857539|gb|AAG00894.1|AC064879_12 Hypothetical protein [Arabidopsis thaliana]
Length = 490
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 132/305 (43%), Gaps = 48/305 (15%)
Query: 91 VDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMW 150
+D+V + +R + +P + +E + +A G+ H+ + + M+ LG+++KF +W
Sbjct: 73 IDRVLKRVRFSHGNPIQTLE-----FYRYASAIRGFYHSSFSLDTMLYILGRNRKFDQIW 127
Query: 151 ELVKEIDELSNGYVSLAAMSTVMRRL------------------------DTRAMSVLMD 186
EL+ E +S M V+ R+ DT + L+
Sbjct: 128 ELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPDFFDTACFNALLR 187
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
TL + S+ A V+ K Q F++L+ GW + +++ + MK G PD
Sbjct: 188 TLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAFFEEMK---GKGLKPD 244
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+Y I+ YC++++ K + +M+E+ P VIT T V+ L Q +A +V +
Sbjct: 245 VVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLK 304
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
+MK C D + YN I + C+ G+A KL ++ + P
Sbjct: 305 EMKEYGCYPDVA----------------AYNAAIRNFCIARRLGDADKLVDEMVKKGLSP 348
Query: 367 DCETH 371
+ T+
Sbjct: 349 NATTY 353
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D + L+D K + AYK+ K ++ I + +I G + D A++ +
Sbjct: 244 DVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVL 303
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KEM ++G PD +Y I ++C + D + EM +KG P+ T + L A
Sbjct: 304 KEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLA 363
Query: 296 KQIYEALKVYEKMKSDDCLTDT 317
+ + ++Y +M ++CL +T
Sbjct: 364 NDLGRSWELYVRMLGNECLPNT 385
Score = 41.2 bits (95), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 42/94 (44%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ I +C R+ A K + EM + G SP+ +Y F D + M
Sbjct: 318 YNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYVRML 377
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
C P+ +C ++ ++ +++ A++++E M
Sbjct: 378 GNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDM 411
>gi|15217756|ref|NP_171744.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806504|sp|Q9FZ19.2|PPR5_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g02420
gi|332189307|gb|AEE27428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 491
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 132/305 (43%), Gaps = 48/305 (15%)
Query: 91 VDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMW 150
+D+V + +R + +P + +E + +A G+ H+ + + M+ LG+++KF +W
Sbjct: 74 IDRVLKRVRFSHGNPIQTLE-----FYRYASAIRGFYHSSFSLDTMLYILGRNRKFDQIW 128
Query: 151 ELVKEIDELSNGYVSLAAMSTVMRRL------------------------DTRAMSVLMD 186
EL+ E +S M V+ R+ DT + L+
Sbjct: 129 ELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPDFFDTACFNALLR 188
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
TL + S+ A V+ K Q F++L+ GW + +++ + MK G PD
Sbjct: 189 TLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAFFEEMK---GKGLKPD 245
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+Y I+ YC++++ K + +M+E+ P VIT T V+ L Q +A +V +
Sbjct: 246 VVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLK 305
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
+MK C D + YN I + C+ G+A KL ++ + P
Sbjct: 306 EMKEYGCYPDVA----------------AYNAAIRNFCIARRLGDADKLVDEMVKKGLSP 349
Query: 367 DCETH 371
+ T+
Sbjct: 350 NATTY 354
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D + L+D K + AYK+ K ++ I + +I G + D A++ +
Sbjct: 245 DVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVL 304
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KEM ++G PD +Y I ++C + D + EM +KG P+ T + L A
Sbjct: 305 KEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLA 364
Query: 296 KQIYEALKVYEKMKSDDCLTDT 317
+ + ++Y +M ++CL +T
Sbjct: 365 NDLGRSWELYVRMLGNECLPNT 386
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 42/94 (44%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ I +C R+ A K + EM + G SP+ +Y F D + M
Sbjct: 319 YNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYVRML 378
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
C P+ +C ++ ++ +++ A++++E M
Sbjct: 379 GNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDM 412
>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Brachypodium distachyon]
Length = 757
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 137/316 (43%), Gaps = 38/316 (12%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP+ TYN +++ L S K +L+KE++ VS STV + ++D
Sbjct: 438 TPDEVTYNILIDNLCSSGKLAKALDLLKEME------VSGCPQSTV-------TYNTIID 484
Query: 187 TLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L KR + A +VF + I ++ F+ LI G C + D A + + +M G P
Sbjct: 485 GLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQP 544
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
+ V+Y + HYC++ + K L+ M G + V+T +++ L KA++ ALK+
Sbjct: 545 NNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLL 604
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEG-NALKLRQKIEEDSC 364
M+ Y+ +I + R G +AL L +++ E
Sbjct: 605 RGMRMKGMKPTPKAYNPVI-----------------QSLFRGNNGRDALSLFREMTEVGG 647
Query: 365 KPDCETHARSLK-MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGN 423
PD T+ + +C +K+ + + EM G +P+ S+ +MLAE L + +
Sbjct: 648 PPDAFTYKIVFRGLCRGGGPIKE---AFDFLVEMADNGFIPEFSSFRMLAEGLLNLGMDD 704
Query: 424 AKERIDELLTHATEQR 439
R EL+ R
Sbjct: 705 YLIRAIELIVEKANFR 720
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 129/289 (44%), Gaps = 39/289 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T+N +++AL +++ + + L MS+ D + LM+ V+
Sbjct: 198 TFNTVIDALCRAR-------------QARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEE 244
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
S+ A ++ + + S +S +VLI+G+CK + A +++ GF PD V++
Sbjct: 245 GSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTF 304
Query: 251 TCFIEHYCREKDFRKVDYTLKE---MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+ F+ C+ VD+ LK M ++GC+P V T + V++ L ++ EA + +
Sbjct: 305 STFVNGLCQNG---HVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQ 361
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
M CL DT+ +NT+I + C ++ AL L +++ P+
Sbjct: 362 MVDSGCLPDTT----------------TFNTLIVALCTENQLEEALDLARELTVKGLSPN 405
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
T + C ++ D L + L EM S G P E T+ +L + L
Sbjct: 406 VYTFNILINALC---KVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNL 451
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 113/266 (42%), Gaps = 23/266 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
DT + L+ L N + A + + +S + F++LI+ CK A +
Sbjct: 370 DTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLF 429
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM G +PD V+Y I++ C K LKEM+ GC S +T ++ L K
Sbjct: 430 EEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKR 489
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIY 336
++I EA +V+++M + +++LI L A R + Y
Sbjct: 490 RRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTY 549
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N++++ C + A + Q + + + D T+A + C +R + L L+R
Sbjct: 550 NSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQ---AALKLLRG 606
Query: 397 MLSKGIVPQESTHKMLAEELEKKSLG 422
M KG+ P + + + L + + G
Sbjct: 607 MRMKGMKPTPKAYNPVIQSLFRGNNG 632
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/307 (19%), Positives = 121/307 (39%), Gaps = 33/307 (10%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G + + Y ++ LG + F LM LV E+ + + V + + A L
Sbjct: 85 GLTPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHE----VGLGLVQSFIGSYARLQL 140
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
D + V++ +F + ++++++ L+ + K + A EM G
Sbjct: 141 FDDAF--DLVSNQLDMF-----GVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIE 193
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD V++ I+ CR + R L+EM P T T +M + I AL++
Sbjct: 194 PDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRL 253
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACV 345
+M C + + LI K R + ++T ++ C
Sbjct: 254 KARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQ 313
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ALK+ + ++ C+PD T++ + C+ +++ ++N +M+ G +P
Sbjct: 314 NGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVN---QMVDSGCLPD 370
Query: 406 ESTHKML 412
+T L
Sbjct: 371 TTTFNTL 377
>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 492
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/329 (20%), Positives = 138/329 (41%), Gaps = 45/329 (13%)
Query: 126 YMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG------------YVSLAAMSTVM 173
Y H+P +++ V+ + + F W LV + L G Y S+ +
Sbjct: 97 YTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASIGKPHRAV 156
Query: 174 RRL----------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWC 223
R D + + L+D L K N V A+ + K + +++L +G+C
Sbjct: 157 RTFLSMHEHGLHQDLHSFNTLLDILCKSNRVETAHDLLRTLKSRFRPDTVSYNILANGYC 216
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
+++ A + +KEM Q G P V+Y ++ Y R ++ EM+++ C+ V+
Sbjct: 217 LKKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVV 276
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------- 329
+ T V+H +A ++ +A +V+++M + + + Y++LI + K
Sbjct: 277 SYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEM 336
Query: 330 ------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+ + +N +I C + AL +++ E + +T+ ++ C
Sbjct: 337 VREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFCDAGE 396
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKML 412
++ G+ V M + L +P T+ +L
Sbjct: 397 IEKGLEVFGKMGDGLC---LPNLDTYNVL 422
>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
Length = 501
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 150/344 (43%), Gaps = 46/344 (13%)
Query: 108 VVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV-----KEIDELSNG 162
+ +AL F A+ G+ H T++ M+ L + +F L L+ ++ID +
Sbjct: 57 IKKALIIFDSATAEYANGFKHDLNTFSLMISKLISANQFRLAETLLDRMKEEKIDVTEDI 116
Query: 163 YVSLA-AMSTVMRRLDT----------------RAMSVLMDTLVKRNSVAHAYKVFLKFK 205
+S+ A + + LD+ ++ ++ LV+ N + A++ + +
Sbjct: 117 LLSICRAYGRIHKPLDSIRVFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRDMR 176
Query: 206 DC-ISLSSQIFDVLIHGWCKTRKS-DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263
I + +VLI +CK + D A + M HG PD +Y I CR +
Sbjct: 177 KMGIPPTVTSLNVLIKAFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSI 236
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+ L+EM+ KGC PSV+T T ++H L + + EA+++ E MK + + YSSL
Sbjct: 237 VEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSL 296
Query: 324 I-----------------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
+ ++ K +R + Y+T+++ C + AL++ +++
Sbjct: 297 MDGFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGF 356
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
KPD + + + C R ++ N + EM+ GI P T
Sbjct: 357 KPDAGLYGKIVNCLCDVSRFQEAA---NFLDEMVLCGIKPNRIT 397
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/188 (19%), Positives = 74/188 (39%), Gaps = 27/188 (14%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ L++G C K + A + M GF PD Y + C F++ L EM
Sbjct: 328 YSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMV 387
Query: 275 EKGCKPSVITCTI-------VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
G KP+ IT ++ V+H L A ++Y + +L
Sbjct: 388 LCGIKPNRITWSLHVRTHNRVIHGLCTINNSNRAFQLY------------------LSVL 429
Query: 328 SKAVRFLI--YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
++ + + +N+++ C + + ++ ++ + C P E + + C +++
Sbjct: 430 TRGISITVDTFNSLLKCFCNKKDLPKTSRILDEMVINGCIPQGEMWSTMVNCFCDERKAC 489
Query: 386 DGMLVLNL 393
D M +L L
Sbjct: 490 DAMKLLQL 497
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 105/221 (47%), Gaps = 22/221 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++V+I+G C+ A + ++EM GF+PD V+Y + YC+E +F + EM
Sbjct: 83 YNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMV 142
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILS 328
G PSV+T T +++++ KA+ + A++ +++M+ + Y++LI +L+
Sbjct: 143 RNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLN 202
Query: 329 KAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+A R L YN I CV AL + Q++ E PD +++ +
Sbjct: 203 EAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTII 262
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C K + + +EM+ KG+ P T+ L + L
Sbjct: 263 SGFCRKGELDR---AFQMKQEMVEKGVSPDAVTYSSLIQGL 300
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 120/282 (42%), Gaps = 33/282 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
+YN ++ L + WE+++E+ GY D + L++ K
Sbjct: 82 SYNVIINGLCREGSMKEAWEILEEM-----GYKGFTP--------DEVTYNTLLNGYCKE 128
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A + + ++ +S S + LI+ CK R + A + +M G P+ +Y
Sbjct: 129 GNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTY 188
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T I+ + R+ + L EM E G PSV+T +H +++ EAL V ++M
Sbjct: 189 TTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVE 248
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
D YS T+IS C + E A +++Q++ E PD T
Sbjct: 249 KGLAPDVVSYS----------------TIISGFCRKGELDRAFQMKQEMVEKGVSPDAVT 292
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
++ ++ C +R+ + +L +EML G+ P E T+ L
Sbjct: 293 YSSLIQGLCEMRRLTE---ACDLSQEMLDMGLPPDEFTYTTL 331
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 123/284 (43%), Gaps = 33/284 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY A++ ++ K++ E + M R + R + L+D ++
Sbjct: 152 TYTALINSMCKARNLNRAMEFFDQ-------------MRIRGLRPNERTYTTLIDGFSRQ 198
Query: 192 NSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ AY++ + + S S ++ IHG C + + A ++EM + G +PD VSY
Sbjct: 199 GLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSY 258
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ I +CR+ + + +EM EKG P +T + ++ L + +++ EA + ++M
Sbjct: 259 STIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEML- 317
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
D L F Y T+I++ CV + AL L ++ PD T
Sbjct: 318 DMGLPPDEF---------------TYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVT 362
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
++ + + R ++ L+ +++ + VP + T+ L E
Sbjct: 363 YSVLINGLNKQARTREAK---RLLFKLIYEESVPSDVTYDTLIE 403
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 101/231 (43%), Gaps = 25/231 (10%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+S + +++LI G+C + EM ++G P+ V+Y I+ YC+ +
Sbjct: 6 VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAF 65
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
LK M KG +P++I+ ++++ L + + EA ++ E+M D
Sbjct: 66 GLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDE---------- 115
Query: 328 SKAVRFLIYNTMISSACVRSEEGN---ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
+ YNT+++ C +EGN AL + ++ + P T+ + C + +
Sbjct: 116 ------VTYNTLLNGYC---KEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNL 166
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA 435
M + MR +G+ P E T+ L + ++ L N RI +T +
Sbjct: 167 NRAMEFFDQMR---IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTES 214
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 131/305 (42%), Gaps = 26/305 (8%)
Query: 122 TQTGYMHTPETYNAMVEA---LGK-SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD 177
T++G+ + TYNA + L + + G++ E+V++ LA D
Sbjct: 212 TESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEK---------GLAP--------D 254
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
+ S ++ ++ + A+++ + + +S + + LI G C+ R+ A +
Sbjct: 255 VVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQ 314
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM G PD +YT I YC E D K + EM KG P +T +++++ L K
Sbjct: 315 EMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQA 374
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
+ EA ++ K+ ++ + Y +LI S + F +I C++ A ++
Sbjct: 375 RTREAKRLLFKLIYEESVPSDVTYDTLIENCSN-IEFKSVVALIKGFCMKGLMHEADRVF 433
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ + E + KP + + C + NL +EM+ G VP T L + L
Sbjct: 434 ESMVERNHKPGEAVYNVIIHGHCRGGNLPK---AFNLYKEMIHSGFVPHTVTVITLIKAL 490
Query: 417 EKKSL 421
K+ +
Sbjct: 491 FKEGM 495
>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
Length = 577
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 141/319 (44%), Gaps = 49/319 (15%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEI-----------------DELSNGYVSLAAM 169
TP+ TY ++++ LGK K+ ++L KE+ + L G + A
Sbjct: 53 TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQA-- 110
Query: 170 STVMRRL-------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHG 221
S+V + + D +S ++D L K + A ++F + ++ + ++ LIHG
Sbjct: 111 SSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG 170
Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
CK RK D A + + +M + +PD ++Y I+ C+ D EM E GCKP
Sbjct: 171 LCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPD 230
Query: 282 VITCTIVMHALEKAKQIYEAL-KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340
V T I++ KA A + ++ + C D Y++++ L+K +
Sbjct: 231 VYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKI------- 283
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
EE A+ L +KI + C P T+ L C R+++ ++L+R+++
Sbjct: 284 -------EE--AVALMEKITANGCTPTIATYNALLNGLCKMGRLEE---AIDLLRKIVDN 331
Query: 401 GIVPQESTHKMLAEELEKK 419
G P T+ L + L K+
Sbjct: 332 GCTPDVVTYTSLIDGLGKE 350
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 29/228 (12%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEI-----------------DELSNGYVSLAAM 169
TP+ TY ++++ LGK K+ ++L KE+ + L G + A
Sbjct: 334 TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQA-- 391
Query: 170 STVMRRL-------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHG 221
S+V + + D +S ++D L K + A ++F + ++ + ++ LIHG
Sbjct: 392 SSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG 451
Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
CK RK D A + + +M + +PD ++Y I+ C+ D EM E GCKP
Sbjct: 452 LCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPD 511
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
V T I++ KA A V++ M S C + Y +LI L K
Sbjct: 512 VYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCK 559
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 106/260 (40%), Gaps = 33/260 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY A+V+ L K+KK L+++I +NG A + L++ L K
Sbjct: 269 TYTAIVDWLAKNKKIEEAVALMEKIT--ANGCTPTIA-----------TYNALLNGLCKM 315
Query: 192 NSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A + K D + + LI G K ++S A K KEM G + D V Y
Sbjct: 316 GRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCY 375
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T I + + K M GC P V+T + ++ L KA +I A+++++ M++
Sbjct: 376 TALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEA 435
Query: 311 DDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGN 351
+ YS+LI L KA + + YN +I C +
Sbjct: 436 RGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEA 495
Query: 352 ALKLRQKIEEDSCKPDCETH 371
A ++ E CKPD T+
Sbjct: 496 ARAFFDEMLEAGCKPDVYTY 515
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 129/307 (42%), Gaps = 37/307 (12%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
Y+A++ L K++K E+ LA M DT +VL+D L K
Sbjct: 164 YSALIHGLCKARKMDCALEM-------------LAQMKKAFCTPDTITYNVLIDGLCKSG 210
Query: 193 SVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM-KEMFQHGFSPDGVSY 250
V A F + + +++LI G+CK +D A ++ +E +G + D +Y
Sbjct: 211 DVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTY 270
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T ++ + K + ++++ GC P++ T +++ L K ++ EA+ + K+
Sbjct: 271 TAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD 330
Query: 311 DDCLTDTSFYSSLIFILSK--------------AVRFLIYNTMISSACVRS--EEG---N 351
+ C D Y+SLI L K A+R L +T+ +A +R + G
Sbjct: 331 NGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQ 390
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A + + + C PD T + + R+ + + + M ++G+ P E +
Sbjct: 391 ASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIG---AAVRIFKSMEARGLAPNEVVYSA 447
Query: 412 LAEELEK 418
L L K
Sbjct: 448 LIHGLCK 454
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 20/210 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L++ L K + A + K D + + LI G K ++S A K KEM
Sbjct: 25 NALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMAL 84
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G + D V YT I + + K M GC P V+T + ++ L KA +I
Sbjct: 85 RGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGA 144
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMIS 341
A+++++ M++ + YS+LI L KA + + YN +I
Sbjct: 145 AVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLID 204
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETH 371
C + A ++ E CKPD T+
Sbjct: 205 GLCKSGDVEAARAFFDEMLEAGCKPDVYTY 234
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 22/217 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L++G CK + + A ++++ +G +PD V+YT I+ +EK + KEM
Sbjct: 24 YNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMA 83
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
+G + T ++ L + +I +A VY+ M S C+ D S++I LSKA R
Sbjct: 84 LRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIG 143
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++Y+ +I C + AL++ ++++ C PD T+ +
Sbjct: 144 AAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLI 203
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C ++ + EML G P T+ +L
Sbjct: 204 DGLCKSGDVEAARAFFD---EMLEAGCKPDVYTYNIL 237
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 23/226 (10%)
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
K + A M+++ +G +P +Y + C+ + L+++ + GC P V+T T
Sbjct: 1 KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----LIYNTMISS 342
++ L K K+ +EA K++++M DT Y++LI L + + +Y TM S
Sbjct: 61 SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120
Query: 343 ACV---------------RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
CV G A+++ + +E P+ ++ + C ++M
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMD-- 178
Query: 388 MLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELL 432
L ++ +M P T+ +L + L K + A+ DE+L
Sbjct: 179 -CALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEML 223
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 16/192 (8%)
Query: 121 KTQTGYMHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT 178
KT T + P+ T + M++ L K+ + G + K ++ LA V
Sbjct: 396 KTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARG-----LAPNEVVY----- 445
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKE 237
S L+ L K + A ++ + K I +++LI G CK+ + A+ E
Sbjct: 446 ---SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDE 502
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M + G PD +Y I +C+ + +M C +V+T ++ L K +Q
Sbjct: 503 MLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQ 562
Query: 298 IYEALKVYEKMK 309
+ +A ++ MK
Sbjct: 563 LTKASLYFQHMK 574
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 14/146 (9%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
Y+A++ L K++K E+ LA M DT ++L+D L K
Sbjct: 445 YSALIHGLCKARKMDCALEM-------------LAQMKKAFCTPDTITYNILIDGLCKSG 491
Query: 193 SVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
V A F + + +++LI G+CK +D A +M S + V+Y
Sbjct: 492 DVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYG 551
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKG 277
I C+ + K + M+E+G
Sbjct: 552 ALISGLCKRRQLTKASLYFQHMKERG 577
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 113/238 (47%), Gaps = 23/238 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++V+I+G C+ A + ++EM GF+PD V+Y + YC+E +F + EM
Sbjct: 287 YNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMV 346
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILS 328
G PSV+T T +++++ KA+ + A++ +++M+ + Y++LI +L+
Sbjct: 347 RNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLN 406
Query: 329 KAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+A R L YN I CV AL + Q++ E PD +++ +
Sbjct: 407 EAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTII 466
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELL 432
C K + + +EM+ KG+ P T+ L + L E + L A + E+L
Sbjct: 467 SGFCRKGELDRA---FQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEML 521
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 120/282 (42%), Gaps = 33/282 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
+YN ++ L + WE+++E+ GY D + L++ K
Sbjct: 286 SYNVIINGLCREGSMKEAWEILEEM-----GYKGFTP--------DEVTYNTLLNGYCKE 332
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A + + ++ +S S + LI+ CK R + A + +M G P+ +Y
Sbjct: 333 GNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTY 392
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T I+ + R+ + L EM E G PSV+T +H +++ EAL V ++M
Sbjct: 393 TTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVE 452
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
D YS T+IS C + E A +++Q++ E PD T
Sbjct: 453 KGLAPDVVSYS----------------TIISGFCRKGELDRAFQMKQEMVEKGVSPDAVT 496
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
++ ++ C +R+ + +L +EML G+ P E T+ L
Sbjct: 497 YSSLIQGLCEMRRLTEA---CDLSQEMLDMGLPPDEFTYTTL 535
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 123/284 (43%), Gaps = 33/284 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY A++ ++ K++ E + M R + R + L+D ++
Sbjct: 356 TYTALINSMCKARNLNRAMEFFDQ-------------MRIRGLRPNERTYTTLIDGFSRQ 402
Query: 192 NSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ AY++ + + S S ++ IHG C + + A ++EM + G +PD VSY
Sbjct: 403 GLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSY 462
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ I +CR+ + + +EM EKG P +T + ++ L + +++ EA + ++M
Sbjct: 463 STIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEML- 521
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
D L F Y T+I++ CV + AL L ++ PD T
Sbjct: 522 DMGLPPDEF---------------TYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVT 566
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
++ + + R ++ L+ +++ + VP + T+ L E
Sbjct: 567 YSVLINGLNKQARTREAK---RLLFKLIYEESVPSDVTYDTLIE 607
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 19/221 (8%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+S + +++LI G+C + EM ++G P+ V+Y I+ YC+ +
Sbjct: 210 VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAF 269
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
LK M KG +P++I+ ++++ L + + EA ++ E+M D
Sbjct: 270 GLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDE---------- 319
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+ YNT+++ C AL + ++ + P T+ + C + +
Sbjct: 320 ------VTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRA 373
Query: 388 MLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
M + MR +G+ P E T+ L + ++ L N RI
Sbjct: 374 MEFFDQMR---IRGLRPNERTYTTLIDGFSRQGLLNEAYRI 411
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 131/305 (42%), Gaps = 26/305 (8%)
Query: 122 TQTGYMHTPETYNAMVEA---LGK-SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD 177
T++G+ + TYNA + L + + G++ E+V++ LA D
Sbjct: 416 TESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEK---------GLAP--------D 458
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
+ S ++ ++ + A+++ + + +S + + LI G C+ R+ A +
Sbjct: 459 VVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQ 518
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM G PD +YT I YC E D K + EM KG P +T +++++ L K
Sbjct: 519 EMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQA 578
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
+ EA ++ K+ ++ + Y +LI S + F +I C++ A ++
Sbjct: 579 RTREAKRLLFKLIYEESVPSDVTYDTLIENCSN-IEFKSVVALIKGFCMKGLMHEADRVF 637
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ + E + KP + + C + NL +EM+ G VP T L + L
Sbjct: 638 ESMVERNHKPGEAVYNVIIHGHCRGGNLPKA---FNLYKEMIHSGFVPHTVTVITLIKAL 694
Query: 417 EKKSL 421
K+ +
Sbjct: 695 FKEGM 699
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 81/204 (39%), Gaps = 21/204 (10%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV--DY 268
SS +FD+++ + D A + GF P +SY ++ R + K+ +
Sbjct: 141 SSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEE 200
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS 328
+EM P+V T I++ ++ + L + +M+ + CL +
Sbjct: 201 VYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNV----------- 249
Query: 329 KAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
+ YNT+I + C A L + + +P+ ++ + C + MK+
Sbjct: 250 -----VTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAW 304
Query: 389 LVLNLMREMLSKGIVPQESTHKML 412
+L EM KG P E T+ L
Sbjct: 305 EIL---EEMGYKGFTPDEVTYNTL 325
>gi|259490098|ref|NP_001159276.1| uncharacterized protein LOC100304366 [Zea mays]
gi|223943161|gb|ACN25664.1| unknown [Zea mays]
gi|414590092|tpg|DAA40663.1| TPA: hypothetical protein ZEAMMB73_658820 [Zea mays]
gi|414590093|tpg|DAA40664.1| TPA: hypothetical protein ZEAMMB73_658820 [Zea mays]
Length = 535
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 50/356 (14%)
Query: 130 PETYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSL---AAMSTVMR 174
P+ Y +M+ L K + FGL L+ E+ E L+ YV + + + R
Sbjct: 135 PDLYASMIVLLAKHRHFGLARHLLDEMRERAVPISRQLILALTRRYVRAEMPSEAADLFR 194
Query: 175 RL--------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR 226
R+ D ++ L+ L K+ + A +F + + ++ ++H WC+
Sbjct: 195 RMEEYGAGAPDPATLASLLAALSKKRLASEAQALFDSCRTVFTPDVVLYTAVVHAWCRAG 254
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
+ D A++ EM Q G P+ +YT I+ R + L +M + GC P+ T
Sbjct: 255 RLDEAERVFTEMQQSGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTTTFN 314
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI--------LSKAVRFL---- 334
+M + KA + + L+V+ +M+ C D Y+ LI L A++ L
Sbjct: 315 AIMRSHVKAGRSEQVLQVHNQMQQLRCEPDVITYNFLIETHCGKGQGNLDAALKVLDKMT 374
Query: 335 ---------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
+N M V G A KL +K+ E CKP+ T+ L++ +K M
Sbjct: 375 AKKCVPDCHTFNPMFRLLLVLGNIGAAHKLYEKMRELQCKPNVVTYNCLLRLFNKEKSMD 434
Query: 386 DGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQRTF 441
+VL + ++M ++GI P T+ L E + GN K R L E+++F
Sbjct: 435 ---MVLRMKKDMDAEGIEPNMHTYAALIEAFCGR--GNWK-RAHTTLKEMIEEKSF 484
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D + + L+ ++ A+K++ K ++ + + ++ L+ + K + D +
Sbjct: 381 DCHTFNPMFRLLLVLGNIGAAHKLYEKMRELQCKPNVVTYNCLLRLFNKEKSMDMVLRMK 440
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM-QEKGCKPSVITCTIVMHALEK 294
K+M G P+ +Y IE +C ++++ TLKEM +EK KPS +V+ L K
Sbjct: 441 KDMDAEGIEPNMHTYAALIEAFCGRGNWKRAHTTLKEMIEEKSFKPSKQVRDMVLVLLRK 500
Query: 295 AKQIYEALKVYEKM 308
A Q+ + ++ E M
Sbjct: 501 AGQLKKHEELVELM 514
>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
Length = 669
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 110/242 (45%), Gaps = 22/242 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+VL++ + + + A V ++ K C + ++V+I+G C+ + D A++ + +
Sbjct: 182 TVLLEAMCRNSGFEQAMAVLDEMRAKGCTP-NIVTYNVIINGMCREGRVDDARELLNRLP 240
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+GF PD VSYT ++ C K + V+ EM EK C P+ +T +++ + +
Sbjct: 241 SYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVE 300
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
A++V E+M C T+T+ + N +I+S C + +A KL +
Sbjct: 301 RAIQVLEQMTEHGCATNTT----------------LCNIVINSICKQGRVDDAFKLLNDM 344
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
C PD ++ LK C +R D +LN EM+ P E T L +K
Sbjct: 345 GSYGCNPDTISYTTVLKGLCRAERWDDAKELLN---EMVRNNCPPNEVTFNTFICILCQK 401
Query: 420 SL 421
L
Sbjct: 402 GL 403
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 103/226 (45%), Gaps = 23/226 (10%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ + +++I+ CK + D A K + +M +G +PD +SYT ++ CR + + L
Sbjct: 317 NTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELL 376
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
EM C P+ +T + L + I +A+ + E+M C
Sbjct: 377 NEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGC----------------T 420
Query: 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
V + YN +++ CV+ +AL+L + + CKP+ T+ L C+ +R+ DG
Sbjct: 421 VGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERL-DG--A 474
Query: 391 LNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
L+ EML P T +L +K L A E +++++ H
Sbjct: 475 AELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHG 520
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 96/215 (44%), Gaps = 22/215 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ L+ G C + D A + + EM + P+ V++ + +C++ + +++M
Sbjct: 458 YTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMM 517
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
E GC P++IT ++ + K +AL++ + S D +SS+I ILSK R
Sbjct: 518 EHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIE 577
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++YN ++ C R E NA+ + + C P+ T+ +
Sbjct: 578 EAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILI 637
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
+ H+ +K+ +L+ + S+G++ + T +
Sbjct: 638 EGLAHEGLLKEAQ---DLLSVLCSRGVLNKNLTEE 669
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/226 (19%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L++G+C D A + + M P+ ++YT + C + + EM
Sbjct: 426 YNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDGAAELVAEML 482
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
C P+V+T +++ + + EA+++ E+M C + Y++L+
Sbjct: 483 RGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSE 542
Query: 325 -------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++SK V + ++++I A++L +++ +P + + L
Sbjct: 543 DALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKIL 602
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
C + + + ++ M+S G +P EST+ +L E L + L
Sbjct: 603 LGLCKRCEIDNA---IDFFAYMVSNGCMPNESTYIILIEGLAHEGL 645
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 20/181 (11%)
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-----AV 331
G P V CT ++ L + + +A +V + D Y++L+ + A
Sbjct: 71 GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 130
Query: 332 RFLI-----------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
R LI Y +I C R +AL L + C+P+ T+ L+ C
Sbjct: 131 RRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCR 190
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATEQR 439
+ M VL+ EM +KG P T+ ++ + ++ + +A+E ++ L ++ +
Sbjct: 191 NSGFEQAMAVLD---EMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPD 247
Query: 440 T 440
T
Sbjct: 248 T 248
>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
Length = 624
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 147/337 (43%), Gaps = 45/337 (13%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G + YNA++ K+K FG ++ + E+ V + TV+ +
Sbjct: 38 EMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEM-------VKNHCLPTVV------TYT 84
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
++D L K A K+ + +D S + ++V++ G C+ RK D A+K ++EM
Sbjct: 85 NIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVR 144
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G+ PD V+Y FI+ C+ +VD K + P V++ T V++ L K+ + A
Sbjct: 145 GYFPDVVTYNSFIKGLCK---CDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSA 201
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAV-------------------RFLIYNTMISS 342
++ ++M + C D YSSLI K + YN+++ +
Sbjct: 202 SRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGA 261
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
G A + ++E PD ++ + C +R+K V + M+ +G
Sbjct: 262 LHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFD---RMVERGC 318
Query: 403 VPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQR 439
P S++ ML EEL K K+ +D+ +T + R
Sbjct: 319 TPNASSYSMLVEELCK------KKELDDAITLVEQAR 349
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 127/284 (44%), Gaps = 28/284 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D ++L+ L + N + A ++ + K+ C+ I++ LI G+ K + A K
Sbjct: 9 DAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVP-DDAIYNALISGYSKAKDFGQAFKF 67
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ EM ++ P V+YT ++ C+ + L EM++KGC P++ T +++ L +
Sbjct: 68 LAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCE 127
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRFLI----------YNT 338
+++ EA K+ E+M D Y+S I L K A +FL Y T
Sbjct: 128 ERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTT 187
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+I+ C + +A ++ ++ C PD T++ + C ++ M L+ ML
Sbjct: 188 VINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAM---GLLDSML 244
Query: 399 SKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATEQRTF 441
G P + L L + +G A++ + E+ E+R F
Sbjct: 245 KLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEM-----ERRGF 283
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 28/210 (13%)
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A+ + EM + GF+PD VSY I+ C+ + +K M E+GC P+ + ++++
Sbjct: 271 AEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVE 330
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------------- 333
L K K++ +A+ + E+ + + D Y+ L+ L K RF
Sbjct: 331 ELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICE 390
Query: 334 ---LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM--CCHKKRMKDGM 388
YN M+ S C R + AL++ +++ E +C C ++ + C R+ D
Sbjct: 391 PDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNC---CNVVTWNILVHGLCVDDRLSDAE 447
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAEELEK 418
++ M+ +G +P T+ L + + K
Sbjct: 448 ---TMLLTMVDEGFIPDFVTYGTLVDAMCK 474
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 115/266 (43%), Gaps = 33/266 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELS-NGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
TYN +VE L + +K + E K ++E++ GY D + + L K
Sbjct: 117 TYNVIVEGLCEERK---LDEAKKMLEEMAVRGYFP-----------DVVTYNSFIKGLCK 162
Query: 191 RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ V A K + ++ + +I+G CK+ D A + + +M G +PD V+Y
Sbjct: 163 CDRVDEARKFLARMP--VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTY 220
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ I+ +C+ + + L M + GC+P+++ ++ AL + I +A + +M+
Sbjct: 221 SSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMER 280
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
D Y++ I L KA R A + ++ E C P+ +
Sbjct: 281 RGFTPDVVSYNACIDGLCKAERV----------------KKAKAVFDRMVERGCTPNASS 324
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMRE 396
++ ++ C KK + D + ++ RE
Sbjct: 325 YSMLVEELCKKKELDDAITLVEQARE 350
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 76/193 (39%), Gaps = 25/193 (12%)
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M PD ++ + CR K L M+E GC P ++ KAK
Sbjct: 1 MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
+A K +M + CL Y++++ L KA R +A+KL
Sbjct: 61 FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGR----------------TKDAVKLLD 104
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
++ + C P+ T+ ++ C ++++ + ++ EM +G P T+ + L
Sbjct: 105 EMRDKGCSPNIYTYNVIVEGLCEERKLDEAK---KMLEEMAVRGYFPDVVTYNSFIKGLC 161
Query: 418 KKSLGNAKERIDE 430
K +R+DE
Sbjct: 162 K------CDRVDE 168
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/233 (19%), Positives = 97/233 (41%), Gaps = 58/233 (24%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD------------ 262
++ I G CK + A+ M + G +P+ SY+ +E C++K+
Sbjct: 290 YNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAR 349
Query: 263 --FRKVD---YTL-------------------KEMQEKGCKPSVITCTIVMHALEKAKQI 298
++ VD YT+ K + EK C+P V +++ + K +QI
Sbjct: 350 EKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQI 409
Query: 299 YEALKVYEKMKSDDC------------------LTDTSFYSSLIFILSKAV--RFLIYNT 338
+AL+++++M +C L+D + L+ ++ + F+ Y T
Sbjct: 410 DKALQIHKQMLERNCCNVVTWNILVHGLCVDDRLSDAE--TMLLTMVDEGFIPDFVTYGT 467
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
++ + C + AL+L ++ + C PD T++ + H+ ++ L+
Sbjct: 468 LVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLF 520
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+V++D+ KR + A ++ + ++C ++ + +++L+HG C + A+ + M
Sbjct: 397 NVMLDSHCKRRQIDKALQIHKQMLERNCCNVVT--WNILVHGLCVDDRLSDAETMLLTMV 454
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
GF PD V+Y ++ C+ +E + GC P V+T + ++ L
Sbjct: 455 DEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAE 514
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIF 325
EA ++ K+ D + ++++I
Sbjct: 515 EAYLLFTKL-------DVALWNAMIL 533
>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
Length = 913
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 119/278 (42%), Gaps = 26/278 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
++L+ L + V A ++ L KDC + S + VL+HG CK + A ++E
Sbjct: 338 NILIRGLFENAKVDEAISIWELLPEKDCCA-DSMTYGVLVHGLCKNGYLNKALSILEEAE 396
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
D +Y+ I CRE +V L +M + GCKP+ C V++ +A ++
Sbjct: 397 NGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLE 456
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMI 340
+AL+ + M S C Y++LI LSKA RF + Y+ ++
Sbjct: 457 DALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLM 516
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+ C + AL L + E KPD + H + C +++D L L EM +
Sbjct: 517 NGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDA---LQLYSEMKQR 573
Query: 401 GIVPQESTHKMLAEELEK-KSLGNAKERIDELLTHATE 437
VP TH L E K + A + D +L + +
Sbjct: 574 NCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQ 611
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/369 (21%), Positives = 144/369 (39%), Gaps = 79/369 (21%)
Query: 106 DKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVS 165
DK E L + W + G+ +Y ++ +L K+ G M + +K DE+ V+
Sbjct: 141 DKAKELLN---WMWGQ---GFSPDVFSYGTLINSLAKN---GYMSDALKLFDEMPERGVT 191
Query: 166 LAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWC 223
D ++L+D K+ + +A +++ + S+ I ++V+I+G C
Sbjct: 192 P----------DVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLC 241
Query: 224 KTRKS-----------------------------------DYAQKAMKEMFQHGFSPDGV 248
K K D A + KEM ++G SPD V
Sbjct: 242 KCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVV 301
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
Y + Y R + K M+++GC+ +V++ I++ L + ++ EA+ ++E +
Sbjct: 302 VYNTMLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELL 360
Query: 309 KSDDCLTDTSFYSSLIF------ILSKAVRFL-------------IYNTMISSACVRSEE 349
DC D+ Y L+ L+KA+ L Y++MI+ C
Sbjct: 361 PEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRL 420
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
+ ++ + CKP+ + +++D L M+SKG P T+
Sbjct: 421 DEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDA---LRFFGNMVSKGCFPTVVTY 477
Query: 410 KMLAEELEK 418
L L K
Sbjct: 478 NTLINGLSK 486
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 110/238 (46%), Gaps = 28/238 (11%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ +++ V+ + + A + F K C + ++ LI+G K + A +KEM
Sbjct: 443 NAVINGFVRASKLEDALRFFGNMVSKGCFP-TVVTYNTLINGLSKAERFSEAYALVKEML 501
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK---EMQEKGCKPSVITCTIVMHALEKAK 296
Q G+ P+ ++Y+ + C+ K K+D L + EKG KP V I++H L +
Sbjct: 502 QKGWKPNMITYSLLMNGLCQGK---KLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSG 558
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
++ +AL++Y +MK +C+ + + +NT++ + A K+
Sbjct: 559 KVEDALQLYSEMKQRNCVPN----------------LVTHNTLMEGFYKVRDFERASKIW 602
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
I + +PD ++ +LK C R+ D + LN + + +G++P T +L +
Sbjct: 603 DHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLN---DAVDRGVLPTAITWNILVQ 657
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 95/229 (41%), Gaps = 21/229 (9%)
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
R+ + L++ L++ N A FL F+ +S + Q +++LI C+ ++ D A++ +
Sbjct: 90 RSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNW 149
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M+ GFSPD SY I + EM E+G P V I++ K
Sbjct: 150 MWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGD 209
Query: 298 IYEALKVYEKM-KSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYN 337
I A +++E++ K + Y+ +I L K +F Y+
Sbjct: 210 ILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYS 269
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
T+I C A ++ +++ E+ PD + L R+++
Sbjct: 270 TLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEE 318
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 92/197 (46%), Gaps = 17/197 (8%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL 166
K+ +AL+ F +K G T TYN ++ L K+++F + LVKE+ L G+
Sbjct: 454 KLEDALRFFGNMVSK---GCFPTVVTYNTLINGLSKAERFSEAYALVKEM--LQKGW--- 505
Query: 167 AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKT 225
+ + S+LM+ L + + A ++ + + ++ +++IHG C +
Sbjct: 506 --------KPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSS 557
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
K + A + EM Q P+ V++ +E + + +DF + + + G +P +I+
Sbjct: 558 GKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISY 617
Query: 286 TIVMHALEKAKQIYEAL 302
I + L +I +A+
Sbjct: 618 NITLKGLCSCHRISDAV 634
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 97/243 (39%), Gaps = 35/243 (14%)
Query: 194 VAHAYK----------VFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
VAHAY +F + + I ++ L++ ++ K D A+
Sbjct: 59 VAHAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETM 118
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G SP+ +Y I+ CR+K F K L M +G P V + ++++L K + +A
Sbjct: 119 GLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDA 178
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL--------------------IYNTMIS 341
LK++++M D + Y+ LI K L YN MI+
Sbjct: 179 LKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMIN 238
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C + + ++ +++++ D T++ + C + DG + +EM G
Sbjct: 239 GLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNL-DG--ATRVYKEMAENG 295
Query: 402 IVP 404
+ P
Sbjct: 296 VSP 298
>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
Length = 447
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 117/255 (45%), Gaps = 22/255 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
D + + ++D L K V AY++F + S+ + ++V+++GWC +++ + +K
Sbjct: 154 DLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKTLEVLK 213
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM + G +P+ +Y ++ + R R EM+++ C+ V+T T V+H A
Sbjct: 214 EMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAG 273
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------AVRF------------LIYN 337
+I A V+++M + L + Y+++I +L K V F YN
Sbjct: 274 EIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYN 333
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+I E +L Q++E + C+P+ +T+ ++ ++ L L +M
Sbjct: 334 VLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKA---LGLFEKM 390
Query: 398 LSKGIVPQESTHKML 412
S +P T+ +L
Sbjct: 391 GSGDCLPNLDTYNIL 405
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 22/198 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN M++ ++ + WE E M++ D V T+V
Sbjct: 226 TYNTMLKGFFRAGQIRHAWEFFLE-----------------MKKRDCEIDVVTYTTVVHG 268
Query: 192 NSVA----HAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
VA A VF + ++ + S ++ +I CK + A +EM + G+ P+
Sbjct: 269 FGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPN 328
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
+Y I +F + + ++ M+ +GC+P+ T +++ + ++ +AL ++E
Sbjct: 329 VTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFE 388
Query: 307 KMKSDDCLTDTSFYSSLI 324
KM S DCL + Y+ LI
Sbjct: 389 KMGSGDCLPNLDTYNILI 406
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 95/258 (36%), Gaps = 56/258 (21%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG------------------------- 242
I S + F ++ + K D A K M +HG
Sbjct: 116 IGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAY 175
Query: 243 ---------FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
FS D V+Y + +C K K LKEM E+G P++ T ++
Sbjct: 176 ELFRALRGRFSVDTVTYNVILNGWCLIKRTPKTLEVLKEMVERGINPNLTTYNTMLKGFF 235
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF-------------ILSKAVR------FL 334
+A QI A + + +MK DC D Y++++ + + +R
Sbjct: 236 RAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVA 295
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN MI C + NA+ + +++ +P+ T+ ++ H G LM
Sbjct: 296 TYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGE---ELM 352
Query: 395 REMLSKGIVPQESTHKML 412
+ M ++G P T+ M+
Sbjct: 353 QRMENEGCEPNFQTYNMM 370
>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 144/343 (41%), Gaps = 45/343 (13%)
Query: 94 VSEILRKRYPSPDKVVEALKCFC-----------FTWAKTQTGYMHTPETYNAMVEALGK 142
+ I+R++ PSP + L +AK Y +N +V+ +
Sbjct: 227 IQTIVREK-PSPKAISSCLNLLVDSNQVDLVRKLLLYAKRSLVYKPNVCIFNILVKYHCR 285
Query: 143 SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF- 201
+E+VKE+ Y ++ ST LMD L + + A+++F
Sbjct: 286 RGDIDSAFEVVKEMRNSKYSYPNVITYST------------LMDGLCRNGRLKEAFELFE 333
Query: 202 -LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
+ KD I ++VLI+G+C+ K+D A+ ++ M +G P+ +Y+ ++ C+
Sbjct: 334 EMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKA 393
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
+ L EM+ G KP IT T +++ + QI EA+++ +MK +DC DT
Sbjct: 394 GKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMKENDCQADT--- 450
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
+ +N ++ C AL + +K+ + + ++ L
Sbjct: 451 -------------VTFNVILGGLCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQ 497
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGN 423
++ +L L MLS+G VP +T L L K+ + N
Sbjct: 498 NCELRKANKLLGL---MLSRGFVPHYATSNELLVRLCKEGMAN 537
>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 1627
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 146/352 (41%), Gaps = 58/352 (16%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA + Y H TY A++ L +++G MW++++E+ V+ +S V+R L
Sbjct: 1100 FRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRML 1159
Query: 177 DT-----RAMSVLMDTLVKR-NSVAHAYKVFLK------------------------FKD 206
+A+++ ++ +A AY + F D
Sbjct: 1160 GNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPD 1219
Query: 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
++ S+ LI +CK + D A + + EM + G P YT I + + D
Sbjct: 1220 TVTYSA-----LISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGA 1274
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
+EM+ + C+P V T T ++ L KA +I EA + +M+ + C DT F +++I
Sbjct: 1275 LSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINF 1334
Query: 327 LSKAVRF-------------------LIYNTMISSAC-VRSEEGNALKLRQKIEEDSCKP 366
L KA R + YNT+I + +S ++++E P
Sbjct: 1335 LGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISP 1394
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
T++ + C RM+ M+ L+ EM KG P + + L + L K
Sbjct: 1395 SSFTYSILIDGFCKTNRMEKAMM---LLEEMDEKGFPPCPAAYCSLIDALGK 1443
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 110/245 (44%), Gaps = 31/245 (12%)
Query: 130 PETY--NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT 187
P+T N M+ LGK+ + +L +E++ L S+ +T+++ L
Sbjct: 1323 PDTVFMNNMINFLGKAGRLDDAMKLFQEMETL-RCIPSVVTYNTIIKAL----------- 1370
Query: 188 LVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
++ + F + K+ IS SS + +LI G+CKT + + A ++EM + GF P
Sbjct: 1371 FESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPC 1430
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
+Y I+ + K + +E++E S +++ L KA ++ +A+ +++
Sbjct: 1431 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFD 1490
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
+M C D Y++L+ L++ M+ AL ++++E C P
Sbjct: 1491 EMNKLGCAPDVYAYNALMSGLAR-------TGMLD---------EALSTMRRMQEHGCIP 1534
Query: 367 DCETH 371
D ++
Sbjct: 1535 DINSY 1539
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 27/202 (13%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL------ 176
+ G+ P Y ++++ALGK+K++ L EL +E+ E + G S + +++ L
Sbjct: 1424 EKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE-NCGSSSARVYAVMIKHLGKAGRL 1482
Query: 177 -----------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQIFDV 217
D A + LM L + + A + ++ CI +++
Sbjct: 1483 DDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIP-DINSYNI 1541
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
+++G KT A + + M Q PD VSY + F + +KEM G
Sbjct: 1542 ILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLG 1601
Query: 278 CKPSVITCTIVMHALEKAKQIY 299
+ +IT + ++ A+ K Y
Sbjct: 1602 FEYDLITYSSILEAIGKVDHEY 1623
>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 604
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 148/347 (42%), Gaps = 48/347 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA + Y H TY A++ L +++G MW++++E+ V+ +S V+R L
Sbjct: 77 FRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRML 136
Query: 177 DT-----RAMSVLMDTLVKR-NSVAHAYKVFL-------KFKDCISLSSQI--------- 214
+A+++ ++ +A AY + +++ L +++
Sbjct: 137 GNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPD 196
Query: 215 ---FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
+ LI +CK + D A + + EM + G P YT I + + D +
Sbjct: 197 TVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFE 256
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
EM+ + C+P V T T ++ L KA +I EA + +M+ + C DT F +++I L KA
Sbjct: 257 EMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAG 316
Query: 332 RF-------------------LIYNTMISSAC-VRSEEGNALKLRQKIEEDSCKPDCETH 371
R + YNT+I + +S ++++E P T+
Sbjct: 317 RLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTY 376
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
+ + C RM+ M+ L+ EM KG P + + L + L K
Sbjct: 377 SILIDGFCKTNRMEKAMM---LLEEMDEKGFPPCPAAYCSLIDALGK 420
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 110/245 (44%), Gaps = 31/245 (12%)
Query: 130 PETY--NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT 187
P+T N M+ LGK+ + +L +E++ L S+ +T+++ L
Sbjct: 300 PDTVFMNNMINFLGKAGRLDDAMKLFQEMETL-RCIPSVVTYNTIIKAL----------- 347
Query: 188 LVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
++ + F + K+ IS SS + +LI G+CKT + + A ++EM + GF P
Sbjct: 348 FESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPC 407
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
+Y I+ + K + +E++E S +++ L KA ++ +A+ +++
Sbjct: 408 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFD 467
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
+M C D Y++L+ L++ M+ AL ++++E C P
Sbjct: 468 EMNKLGCAPDVYAYNALMSGLAR-------TGMLDE---------ALSTMRRMQEHGCIP 511
Query: 367 DCETH 371
D ++
Sbjct: 512 DINSY 516
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 27/202 (13%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL------ 176
+ G+ P Y ++++ALGK+K++ L EL +E+ E + G S + +++ L
Sbjct: 401 EKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE-NCGSSSARVYAVMIKHLGKAGRL 459
Query: 177 -----------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQIFDV 217
D A + LM L + + A + ++ CI +++
Sbjct: 460 DDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIP-DINSYNI 518
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
+++G KT A + + M Q PD VSY + F + +KEM G
Sbjct: 519 ILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLG 578
Query: 278 CKPSVITCTIVMHALEKAKQIY 299
+ +IT + ++ A+ K Y
Sbjct: 579 FEYDLITYSSILEAIGKVDHEY 600
>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
Length = 457
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/327 (21%), Positives = 130/327 (39%), Gaps = 42/327 (12%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA +Q Y H +YN ++E L KS + D + Y + A V
Sbjct: 4 FQWAGSQVHYNHGTLSYNYLLEVLAKSGR----------CDHVYGTYNDMLAAGCVP--- 50
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFD--VLIHGWCKTRKSDYAQ 232
+T L+ +L + A VF + + C S +F +LI G C+ +K D A
Sbjct: 51 NTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGC---SPNVFSYSILIAGLCRGQKVDEAA 107
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ + EM G P+ V+Y + C+ ++ M +GC P + +++
Sbjct: 108 ELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGF 167
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------------- 333
K + EA +++E+M C+ Y+SL+ S+ F
Sbjct: 168 SKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNI 227
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+N ++ C + A +L ++ C PD ++ ++ C K + + L
Sbjct: 228 FTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQ---RL 284
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKS 420
+REM+ G+ P ++ +L + K
Sbjct: 285 LREMIRSGVGPDIVSYNILIDGYSKSG 311
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 98/233 (42%), Gaps = 23/233 (9%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI------------DELSNGYVSLAAMS 170
+ G + T TYN+++ + +FG + L K++ + L +G+ + M
Sbjct: 185 EKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMV 244
Query: 171 TV------MRRLDTRAMSVLMDTLVK---RNSVAHAYKVFLK--FKDCISLSSQIFDVLI 219
MR L V +TL++ H + L+ + + +++LI
Sbjct: 245 EAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILI 304
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
G+ K+ D+A K E+ + G PD SY+ I+ CR K+M G
Sbjct: 305 DGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSA 364
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
P ++ L + +++ E+ ++++ M +C+ Y+ L++ L KA R
Sbjct: 365 PDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKR 417
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + ++L+D K ++ HA K+F + K + + + +I C+ K A
Sbjct: 296 DIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVF 355
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
K+M +G +PD + CR + + + M + C P + ++M+ L KA
Sbjct: 356 KDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKA 415
Query: 296 KQIYEALKVYEKM 308
K+ + +++ ++
Sbjct: 416 KRSDDVCEIFHEL 428
>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 418
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 119/271 (43%), Gaps = 31/271 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L + R + D SVL++ L K + +
Sbjct: 164 KWGLRPSVV-SFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKM 222
Query: 195 AHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A ++F + + + + F LI G CKT D A +A KEM + GFSPD ++Y
Sbjct: 223 NDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTL 282
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I C+E D ++ + EM KG KP IT T ++ K + A K ++M ++
Sbjct: 283 IYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENI 342
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
D Y++L IS C + A K+ +++ KPD T+
Sbjct: 343 RLDDVAYTAL----------------ISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTM 386
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ C K +K G L++EM G VP
Sbjct: 387 IINEFCKKGDVKMGS---KLLKEMQRDGHVP 414
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 105/261 (40%), Gaps = 51/261 (19%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
S F++L+H +CK + AQ E+ + G P VS+ + Y R D +
Sbjct: 135 SLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLK 194
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF----- 325
M G +P V T +++++ L K ++ +A +++++M + + + +++LI
Sbjct: 195 SAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKT 254
Query: 326 ------------ILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+L + + YNT+I C + A L ++ KPD T+
Sbjct: 255 GSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITY 314
Query: 372 ARSLKMCC----------HKKRM--------------------KDGMLVL--NLMREMLS 399
+ C +KKRM ++G V ++REMLS
Sbjct: 315 TTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLS 374
Query: 400 KGIVPQESTHKMLAEELEKKS 420
G+ P T+ M+ E KK
Sbjct: 375 VGLKPDNGTYTMIINEFCKKG 395
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K +L+ E MS + D + L+D K
Sbjct: 278 TYNTLIYGLCKEGDLKQAQDLIDE-------------MSMKGLKPDKITYTTLIDGSCKE 324
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A+K + K+ I L + LI G C+ +S A+K ++EM G PD +Y
Sbjct: 325 GDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTY 384
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
T I +C++ D + LKEMQ G P V+T
Sbjct: 385 TMIINEFCKKGDVKMGSKLLKEMQRDGHVPCVVT 418
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 78/197 (39%), Gaps = 20/197 (10%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KE+ + G+ + + +C+E + R E+ + G +PSV++ +M+ +
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRL 184
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ E ++ M D YS L I+ C S+ +A +L
Sbjct: 185 GDLDEGFRLKSAMHGSGIQPDVYTYSVL----------------INGLCKESKMNDANEL 228
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
++ + P+ T + C + L + +EML +G P T+ L
Sbjct: 229 FDEMIGNGLVPNGVTFTTLIDGHCKTGSID---LAMEAYKEMLRQGFSPDLITYNTLIYG 285
Query: 416 LEKKS-LGNAKERIDEL 431
L K+ L A++ IDE+
Sbjct: 286 LCKEGDLKQAQDLIDEM 302
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 19/161 (11%)
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
+EH+ + K F+ V KE+ E G S+ I+MH K ++ A V+++
Sbjct: 108 LEHFMKLKYFKSVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDE------ 161
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
+T S++ +NT+++ + +L+ + +PD T++
Sbjct: 162 ITKWGLRPSVV----------SFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSV 211
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ C + +M D L EM+ G+VP T L +
Sbjct: 212 LINGLCKESKMNDAN---ELFDEMIGNGLVPNGVTFTTLID 249
>gi|356570295|ref|XP_003553325.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
mitochondrial-like [Glycine max]
Length = 516
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 146/343 (42%), Gaps = 47/343 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLA--------- 167
F WA Q GY H+ Y++M+ LGK +KF W L++E+ G +
Sbjct: 83 FLWAGKQPGYAHSIREYHSMISILGKMRKFDTAWNLIEEMRRGRTGPSLVTPQTLLIMIR 142
Query: 168 ---AMSTVMRRLDT-------------RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211
A+ V R ++T L+ L + +V A + K+ L
Sbjct: 143 KYCAVHDVARAINTFYAYKQFNFQVGLEEFHSLLSALCRYKNVQDAEHLLFCNKNLFPLD 202
Query: 212 SQIFDVLIHGWCK-TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ F+++++GWC + +A++ EM + D VSY I Y + KV
Sbjct: 203 TKSFNIILNGWCNLIVSTSHAERIWHEMSKRRIQHDVVSYGSIISCYSKSSKLYKVLRMF 262
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
EM+++ P V++AL K + + EA+ + ++ +D + Y+SLI L KA
Sbjct: 263 DEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNLIGTLEDNDVTPNVVTYNSLIKPLCKA 322
Query: 331 VRF-----LIYNTM---ISSA---------CVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
+ L Y + +S +R++E +L K++E C P ET+
Sbjct: 323 GKVDEAKQLFYEILKRHLSPTIQTFHAFFRILRTKE-EVFELLDKMKELGCYPTIETYIM 381
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ C +++ D + + MRE GI S++ +L L
Sbjct: 382 LMRKFCRWRQLDDVFKMWDAMRE---DGIGHDRSSYIVLIHGL 421
>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 716
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 124/292 (42%), Gaps = 41/292 (14%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
++G + T N MV AL K K L N V L+ M D
Sbjct: 216 VKSGNIVNVYTLNIMVNALCKDGK-------------LDNVGVYLSEMEEKGVYADLVTY 262
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCIS---LSSQIF--DVLIHGWCKTRKSDYAQKAMK 236
+ L++ +R V+ A+ + DC++ L +F + LI+G CK + A++ +
Sbjct: 263 NTLVNAYCRRGLVSEAFGLV----DCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLD 318
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM G P+ ++ + CR++D + + EM ++G P +I+ + ++ +
Sbjct: 319 EMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNG 378
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
++ AL +EKMK + DT +IY +I+ C + ALK+R
Sbjct: 379 ELGRALAYFEKMKGVGLVPDT----------------VIYTILINGYCRNDDVSGALKMR 422
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
++ E C D T+ L C K + D L +EM+ +G+ P T
Sbjct: 423 NEMVERGCVMDVVTYNTLLNGLCRGKMLDDAD---ELFKEMVERGVFPDFYT 471
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 142/360 (39%), Gaps = 62/360 (17%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
+ IL Y D V ALK + G + TYN ++ L + K EL
Sbjct: 401 IYTILINGYCRNDDVSGALK---MRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELF 457
Query: 154 KEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS- 212
KE+ E G D ++ L+ K ++ A +F + ++L S
Sbjct: 458 KEMVE--RGVFP-----------DFYTLTTLIHGYCKDGNMTKALSLF----ETMTLRSL 500
Query: 213 ----QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
++ L+ G+CK + + A++ +M P +S++ I +C +
Sbjct: 501 KPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFR 560
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD----DCLTDTSFYSSLI 324
EM+EKG KP+++TC ++ +A + +A M S+ DC+T
Sbjct: 561 LWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCIT--------- 611
Query: 325 FILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
YNT+I+S A L +EE P+ T+ L RM
Sbjct: 612 -----------YNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRM 660
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI---DELLTHATEQRTF 441
++ +VL+ +M+ KGI P +ST+ L K N KE DE+L QR F
Sbjct: 661 QEAEMVLH---KMIDKGINPDKSTYTSLINGYVSKD--NMKEAFRVHDEML-----QRGF 710
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 106/266 (39%), Gaps = 29/266 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + S ++ + + A F K K + + I+ +LI+G+C+ A K
Sbjct: 363 DLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMR 422
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM + G D V+Y + CR K D KEM E+G P T T ++H K
Sbjct: 423 NEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKD 482
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI-----------------FILSKAV--RFLIY 336
+ +AL ++E M D Y++L+ ++S+ + ++ +
Sbjct: 483 GNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISF 542
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKP---DCETHARSLKMCCHKKRMKDGMLVLNL 393
+ +I+ C A +L +++E KP C T + + + D
Sbjct: 543 SILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKAND------F 596
Query: 394 MREMLSKGIVPQESTHKMLAEELEKK 419
+ M+S+G+ P T+ L K+
Sbjct: 597 LNTMISEGVPPDCITYNTLINSFVKE 622
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 83/210 (39%), Gaps = 21/210 (10%)
Query: 195 AHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI 254
+ A+++ K C+S+++ + L+ K D A K ++ + G + + +
Sbjct: 174 SEAFQLLRKRGFCVSINAC--NALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMV 231
Query: 255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
C++ V L EM+EKG ++T +++A + + EA + DC+
Sbjct: 232 NALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLV------DCM 285
Query: 315 TDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
L YN +I+ C A ++ ++ P+ T
Sbjct: 286 AGKGLKPGL----------FTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPM 335
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
L C K+ + + V N EML +G+VP
Sbjct: 336 LVESCRKEDVWEAERVFN---EMLQRGVVP 362
>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 109/463 (23%), Positives = 181/463 (39%), Gaps = 92/463 (19%)
Query: 37 NELTGLPSWLKFFDTQSP-----DEDFV-IPSLASW-------VESLKLNEQSRISSHAL 83
+E+ LP+ F + P DE F+ I + W +E LKL R+ L
Sbjct: 10 DEMQNLPTQNSKFSRRDPSVRTLDERFIRILKIFKWGPDAEKALEVLKLKVDHRLVREVL 69
Query: 84 SEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKS 143
D E +V K F WA + + H TY ++ L
Sbjct: 70 KIDVEINV---------------------KIQFFKWAGKRRNFEHDLTTYMPLIRCLDDC 108
Query: 144 KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD-----TRAMSVLMD--------TLVK 190
FG MW++++E+ + A +S V++ L +A+SV T
Sbjct: 109 GLFGEMWKMIQEMVRSPTCVIGPADLSEVVKILGKAKMVNKALSVFYQIKSRKCKPTAST 168
Query: 191 RNSV-------AHAYKVFLKF------KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
NS+ H K+ + DC + + VL+ + K + DYA + E
Sbjct: 169 YNSMILMLMQEGHHEKIHELYHEMCNEGDCFP-DTMTYSVLVSAFVKLGRDDYAIRLFDE 227
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M +G P YT + Y + D + + ++EM++KGC P+V T T ++ L K+ +
Sbjct: 228 MKANGLHPTAKIYTTLLAIYFKSGDEKALGL-VQEMKDKGCAPTVFTYTELIKGLGKSGR 286
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNT 338
+ +A V+ M D C D ++LI I KA R + YNT
Sbjct: 287 VEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNT 346
Query: 339 MISSAC-VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+I + ++ A +K++ + P T++ + C R++ +L L+ EM
Sbjct: 347 VIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALL---LLEEM 403
Query: 398 LSKGIVPQESTHKMLAEELEKKSLGNAK--ERIDELLTHATEQ 438
KG P + + L +LG AK E +EL E
Sbjct: 404 DEKGFPPCPAAYCSLI-----NALGKAKRYEAANELFLELKEN 441
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 115/264 (43%), Gaps = 40/264 (15%)
Query: 132 TYNAMVEALGKSKK----FGLMWELVKE--------IDELSNGYVSLAAMSTV------M 173
TY +++ LGKS + + + ++K+ I+ L N + + M
Sbjct: 273 TYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQM 332
Query: 174 RRLDTRAMSVLMDTLVK-----RNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRK 227
R L V +T++K + + A F K K + ++ SS + +LI G+CKT +
Sbjct: 333 RSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNR 392
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
+ A ++EM + GF P +Y I + K + + E++E + S +
Sbjct: 393 VEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSARIYAV 452
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRS 347
++ L K + EA+ ++ +MK C D Y++L+ L +A MI A
Sbjct: 453 MIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRA-------GMIEEAF--- 502
Query: 348 EEGNALKLRQKIEEDSCKPDCETH 371
+AL+ +EE+ C PD +H
Sbjct: 503 ---SALR---TMEENGCTPDLNSH 520
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 116/290 (40%), Gaps = 50/290 (17%)
Query: 34 CITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDK 93
C N +T F++++P + ASW E +K N + SS S
Sbjct: 337 CAPNVVTYNTVIKALFESKAPASE-----AASWFEKMKANGVTP-SSFTYS--------- 381
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
IL + ++V +AL + G+ P Y +++ ALGK+K++ EL
Sbjct: 382 ---ILIDGFCKTNRVEKAL---LLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELF 435
Query: 154 KEIDELSNGYVSLAAMSTVMRRL-----------------------DTRAMSVLMDTLVK 190
E+ E + G S + +++ L D A + LM LV+
Sbjct: 436 LELKE-NCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVR 494
Query: 191 RNSVAHAYKVFLKFKD--CI-SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+ A+ ++ C L+S +++++G +T + + A + +M PD
Sbjct: 495 AGMIEEAFSALRTMEENGCTPDLNSH--NIILNGLARTGRPEQATEMFMKMKDSLIKPDA 552
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
VSY + R F + ++EM +G + IT + ++ A+ K +
Sbjct: 553 VSYNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAVGKVDE 602
>gi|297807523|ref|XP_002871645.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317482|gb|EFH47904.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 524
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 154/365 (42%), Gaps = 55/365 (15%)
Query: 103 PSPDKVVEALK--------CFCF-TWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
PS + VVE L F F WA Q GY+ + Y++M+ LGK +KF W L+
Sbjct: 74 PSNELVVEILSQVRNDWETAFTFFVWAGKQQGYVRSVREYHSMISILGKMRKFDTAWTLI 133
Query: 154 KEIDELSNGYVSLAAMSTVMRR-----------------------LDTRAMSVLMDTLVK 190
E+ + S V+ + ++R+ + L+ L +
Sbjct: 134 DEMRKFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCR 193
Query: 191 RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDY-AQKAMKEMFQHGFSPDGVS 249
+V+ A + KD ++ F+++++GWC S A++ EM G D VS
Sbjct: 194 YKNVSDAEHLIFCNKDTYPFDAKSFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVS 253
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+ I Y + KV M+++ +P V+HAL KA + EA + + M+
Sbjct: 254 YSSMISCYSKGGSLNKVLKLFDRMKKESIEPDRKVYNAVIHALAKASFVSEARNLMKTME 313
Query: 310 SDDCL-TDTSFYSSLIFILSKAVRF----LIYNTMISSA-------------CVRSEEGN 351
+ + + Y+SLI L KA + +++ M+ +R+ E
Sbjct: 314 EEKGMEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMRILRTGE-E 372
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
+L K+ + C+P +T+ ++ C R +D VL L EM KG+ P S++ +
Sbjct: 373 VFELLAKMRKMGCQPTVDTYIMLIRKLC---RWRDFDNVLLLWNEMKEKGVGPDLSSYIV 429
Query: 412 LAEEL 416
+ L
Sbjct: 430 MIHGL 434
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 34/167 (20%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKA 234
D + + ++ L K + V+ A + ++ + + ++ LI CK RK++ A++
Sbjct: 285 DRKVYNAVIHALAKASFVSEARNLMKTMEEEKGMEPNVVTYNSLIKPLCKARKTEEAKQV 344
Query: 235 MKEMFQHGFSPDGVSYTCF--------------------------------IEHYCREKD 262
EM + G P +Y F I CR +D
Sbjct: 345 FDEMLEKGLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCQPTVDTYIMLIRKLCRWRD 404
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
F V EM+EKG P + + +++H L +I EA Y++MK
Sbjct: 405 FDNVLLLWNEMKEKGVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMK 451
>gi|334183970|ref|NP_177858.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332197845|gb|AEE35966.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 402
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 91/382 (23%), Positives = 164/382 (42%), Gaps = 81/382 (21%)
Query: 62 SLASWVESLKLNEQSRISSHA------LSEDHETDVDKVSEILRKRYPSPDKVVEALKC- 114
S + W+ + N + ++S+A S++ +V K++ ++ K S + V +AL
Sbjct: 45 SFSDWISRIP-NFKHNVTSYASLVTLLCSQEIPYEVPKITILMIK---SCNSVRDALFVV 100
Query: 115 -FCFTWAKT---QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMS 170
FC T K + Y TP+ YN ++ +L + FGL+ E
Sbjct: 101 DFCRTMRKGDSFEIKYKLTPKCYNNLLSSLAR---FGLVEE------------------- 138
Query: 171 TVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDY 230
M+RL T + +D +S F+ L++G+CK
Sbjct: 139 --MKRLYTEML-----------------------EDLVSPDIYTFNTLVNGYCKLGYVVE 173
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A++ + + Q G PD +YT FI +CR K+ KEM + GC + ++ T +++
Sbjct: 174 AKQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIY 233
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEG 350
L +AK+I EAL + KMK D+C + VR Y +I + C ++
Sbjct: 234 GLFEAKKIDEALSLLVKMKDDNCCPN--------------VR--TYTVLIDALCGSGQKS 277
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A+ L +++ E KPD + ++ C + + L+ ML G++P T+
Sbjct: 278 EAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEAS---GLLEHMLENGLMPNVITYN 334
Query: 411 MLAEELEKKSLGNAKERIDELL 432
L + KK++ A + ++L
Sbjct: 335 ALIKGFCKKNVHKAMGLLSKML 356
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 39/176 (22%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD---- 177
TQ G +Y ++ L ++KK IDE A+S +++ D
Sbjct: 217 TQNGCHRNEVSYTQLIYGLFEAKK----------IDE---------ALSLLVKMKDDNCC 257
Query: 178 --TRAMSVLMDTLVKRNSVAHAYKVF-------LKFKDCISLSSQIFDVLIHGWCKTRKS 228
R +VL+D L + A +F +K DC+ + VLI +C
Sbjct: 258 PNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCM------YTVLIQSFCSGDTL 311
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
D A ++ M ++G P+ ++Y I+ +C+ K+ K L +M E+ P +IT
Sbjct: 312 DEASGLLEHMLENGLMPNVITYNALIKGFCK-KNVHKAMGLLSKMLEQNLVPDLIT 366
>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 559
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 116/246 (47%), Gaps = 33/246 (13%)
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMK 236
+V N++ + + K KD L +++ F++L+ G+CK R+ A+ +
Sbjct: 247 VVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLA 306
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M + G PD +Y ++ YC K+ K + + ++G P++ + +I++H K K
Sbjct: 307 MMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIK 366
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYN 337
++ EA+ ++++M ++ + D Y+SLI L K + + YN
Sbjct: 367 KVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYN 426
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+++ + C + A+ L K++++ +PD T+ + C R++D +V ++
Sbjct: 427 SILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVF---EDL 483
Query: 398 LSKGIV 403
L KG +
Sbjct: 484 LVKGYI 489
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 118/273 (43%), Gaps = 35/273 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN++++ + LVKE+++ + + +++ + + S+++ K
Sbjct: 319 TYNSLMDR----------YCLVKEVNKAKHIFNTISQRGV---NPNIHSYSIMIHGFCKI 365
Query: 192 NSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
V A +F K C ++ + ++ LI G CK K YA K + EM G D ++
Sbjct: 366 KKVDEAMNLF-KEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKIT 424
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y ++ C+ K L +M+++G +P + T T ++ L K ++ +A V+E +
Sbjct: 425 YNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLL 484
Query: 310 SDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
+ D + IY MI C +L L K+EE+ C P+
Sbjct: 485 VKGYILDVN----------------IYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAV 528
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
T+ + C + L+REM+++G+
Sbjct: 529 TYEI---IICSLFDKDENDKAEKLLREMITRGL 558
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/384 (18%), Positives = 152/384 (39%), Gaps = 49/384 (12%)
Query: 84 SEDHETD------VDKVSEILRKRYPSPDKVVEALKCFCFTWAK-----TQTGYMHTPET 132
S+ HE D V + +L ++ P P F + K ++ + T +
Sbjct: 43 SQFHENDDNKHNLVSSFNRLLHQKNPKPS---------IFQFGKILGSLVKSNHYSTVVS 93
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
+ +E G + ++ L+ +L +S + ++ +++ + + + TL+K
Sbjct: 94 LHRQMEFNGITSDLVILSILINCFSQLGQNPLSFSVLAKILK-MGYEPNVITLTTLIKGL 152
Query: 193 SVAHAYKVFLKFKD-CISLSSQI----FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+ L+F D ++L + + LI+G CK ++ A + ++ + P+
Sbjct: 153 CLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNV 212
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
V Y I+ C+ K + EM KG P V+T ++ ++ +A ++ K
Sbjct: 213 VMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNK 272
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSE 348
M ++ + ++ L+ K R YN+++ C+ E
Sbjct: 273 MIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKE 332
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
A + I + P+ +++ + C K++ + M NL +EM I+P T
Sbjct: 333 VNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAM---NLFKEMHCNNIIPDVVT 389
Query: 409 HKMLAEELEK-KSLGNAKERIDEL 431
+ L + L K + A + +DE+
Sbjct: 390 YNSLIDGLCKLGKISYALKLVDEM 413
>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
[Vitis vinifera]
Length = 691
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 142/349 (40%), Gaps = 47/349 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMS------TVM 173
TY+ ++ L S + KE+ E + NGY+ + VM
Sbjct: 292 TYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVM 351
Query: 174 RRLDTRAM---SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKS 228
+ R + ++L+ L + V A ++ L KDC + S + VL+HG CK
Sbjct: 352 EKEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCA-DSMTYGVLVHGLCKNGYL 410
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+ A ++E D +Y+ I CRE +V L +M + GCKP+ C V
Sbjct: 411 NKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAV 470
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--------------- 333
++ +A ++ +AL+ + M S C Y++LI LSKA RF
Sbjct: 471 INGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGW 530
Query: 334 ----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ Y+ +++ C + AL L + E KPD + H + C +++D
Sbjct: 531 KPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVED--- 587
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDELLTHATE 437
L L EM + VP TH L E K + A + D +L + +
Sbjct: 588 ALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQ 636
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/352 (20%), Positives = 138/352 (39%), Gaps = 73/352 (20%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G+ +Y ++ +L K+ G M + +K DE+ V+ D +
Sbjct: 177 EQGFSPDVFSYGTLINSLAKN---GYMSDALKLFDEMPERGVTP----------DVACYN 223
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKS------------ 228
+L+D K+ + +A +++ + S+ I ++V+I+G CK K
Sbjct: 224 ILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKK 283
Query: 229 -----------------------DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
D A + KEM ++G SPD V Y + Y R +
Sbjct: 284 NERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEE 343
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
K M+++GC+ +V++ I++ L + ++ EA+ ++E + DC D+ Y L+
Sbjct: 344 CLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVH 402
Query: 326 ------ILSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
L+KA+ L Y++MI+ C + ++ + CKP
Sbjct: 403 GLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKP 462
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
+ + +++D L M+SKG P T+ L L K
Sbjct: 463 NPHVCNAVINGFVRASKLED---ALRFFGNMVSKGCFPTVVTYNTLINGLSK 511
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 96/229 (41%), Gaps = 21/229 (9%)
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
R+ + L++ L++ N A FL F+ +S + Q +++LI C+ ++ D A++ +
Sbjct: 115 RSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNW 174
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M++ GFSPD SY I + EM E+G P V I++ K
Sbjct: 175 MWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGD 234
Query: 298 IYEALKVYEKM-KSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYN 337
I A +++E++ K + Y+ +I L K +F Y+
Sbjct: 235 ILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYS 294
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
T+I C A ++ +++ E+ PD + L R+++
Sbjct: 295 TLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEE 343
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 108/240 (45%), Gaps = 28/240 (11%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ +++ V+ + + A + F K C + ++ LI+G K + A +KEM
Sbjct: 468 NAVINGFVRASKLEDALRFFGNMVSKGCFP-TVVTYNTLINGLSKAERFSEAYALVKEML 526
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK---EMQEKGCKPSVITCTIVMHALEKAK 296
G+ P+ ++Y+ + C+ K K+D L + EKG KP V I++H L +
Sbjct: 527 HKGWKPNMITYSLLMNGLCQGK---KLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSG 583
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
++ +AL++Y +MK C+ + + +NT++ + A K+
Sbjct: 584 KVEDALQLYSEMKQRKCVPN----------------LVTHNTLMEGFYKVRDFERASKIW 627
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
I + +PD ++ +LK C R+ D + LN + + +G++P T +L +
Sbjct: 628 DHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLN---DAVDRGVLPTAITWNILVRAV 684
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 92/197 (46%), Gaps = 17/197 (8%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL 166
K+ +AL+ F +K G T TYN ++ L K+++F + LVKE+ L G+
Sbjct: 479 KLEDALRFFGNMVSK---GCFPTVVTYNTLINGLSKAERFSEAYALVKEM--LHKGW--- 530
Query: 167 AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKT 225
+ + S+LM+ L + + A ++ + + ++ +++IHG C +
Sbjct: 531 --------KPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSS 582
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
K + A + EM Q P+ V++ +E + + +DF + + + G +P +I+
Sbjct: 583 GKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISY 642
Query: 286 TIVMHALEKAKQIYEAL 302
I + L +I +A+
Sbjct: 643 NITLKGLCSCHRISDAV 659
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 88/210 (41%), Gaps = 23/210 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L++ ++ K D A+ G SP+ +Y I+ CR+K F K L M
Sbjct: 117 YNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMW 176
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
E+G P V + ++++L K + +ALK++++M D + Y+ LI K L
Sbjct: 177 EQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDIL 236
Query: 335 --------------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
YN MI+ C + + ++ +++++ D T++
Sbjct: 237 NASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTL 296
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ C + DG + +EM G+ P
Sbjct: 297 IHGLCGSGNL-DG--ATRVYKEMAENGVSP 323
>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
Length = 668
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 109/242 (45%), Gaps = 22/242 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+VL++ + K + A V ++ K C + ++V+I+G C+ + D A+ + +F
Sbjct: 181 TVLLEAMCKNSGFEQAMAVLDEMRAKGCTP-NIVTYNVIINGMCREGRVDDARDLLNRLF 239
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+G PD VSYT ++ C K + V+ EM EK C P+ +T +++ + +
Sbjct: 240 SYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVE 299
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
A++V ++M +C T+T+ + N +I+S C + +A K +
Sbjct: 300 RAIQVLQQMTEHECATNTT----------------LCNIVINSICKQGRVDDAFKFLNNM 343
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
C PD ++ LK C +R D L++EM+ P E T L +K
Sbjct: 344 GSYGCNPDTISYTTVLKGLCRAERWNDAK---ELLKEMVRNNCPPNEVTFNTFICILCQK 400
Query: 420 SL 421
L
Sbjct: 401 GL 402
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 23/226 (10%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ + +++I+ CK + D A K + M +G +PD +SYT ++ CR + + L
Sbjct: 316 NTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELL 375
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
KEM C P+ +T + L + I +A+ + E+M+ C
Sbjct: 376 KEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGC----------------T 419
Query: 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
V + YN +++ CV+ +AL+L + + CKP+ T+ L C+ +R+
Sbjct: 420 VGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDAAA-- 474
Query: 391 LNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
L+ EML + P T +L +K L A E +++++ H
Sbjct: 475 -ELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHG 519
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 93/207 (44%), Gaps = 19/207 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ L+ G C + D A + + EM P+ V++ + +C++ + +++M
Sbjct: 457 YTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMM 516
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
E GC P++IT + + K +AL++ + S D +SS+I ILSK R
Sbjct: 517 EHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRV- 575
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
EE A+++ ++ +P + + L C + + + ++ +
Sbjct: 576 -------------EE--AIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNA---IDFL 617
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSL 421
M+S G +P EST+ +L E L ++ L
Sbjct: 618 AYMVSNGCMPNESTYIILIEGLAREGL 644
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 20/181 (11%)
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-----AV 331
G P V CT ++ L + + +A +V + D Y++L+ + A
Sbjct: 70 GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 129
Query: 332 RFLI-----------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
R LI Y +I C R +AL L + C+P+ T+ L+ C
Sbjct: 130 RRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCK 189
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATEQR 439
+ M VL+ EM +KG P T+ ++ + ++ + +A++ ++ L ++ +
Sbjct: 190 NSGFEQAMAVLD---EMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPD 246
Query: 440 T 440
T
Sbjct: 247 T 247
>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
Length = 638
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 147/347 (42%), Gaps = 48/347 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA + Y H TY A++ L +++G MW++++E+ V+ +S V+R L
Sbjct: 110 FRWAAKRRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRML 169
Query: 177 D-----TRAMSVLMDTLVKR-NSVAHAYKVFL-------KFKDCISLSSQI--------- 214
++A+++ ++ A AY + ++ L +++
Sbjct: 170 GNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPD 229
Query: 215 ---FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
+ LI +CK + D A + + EM ++G P YT I + + D +
Sbjct: 230 TMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFE 289
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
EM+ + C+P V T T ++ L KA +I EA + +M+ + C DT +++I L KA
Sbjct: 290 EMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAG 349
Query: 332 RF-------------------LIYNTMISSAC-VRSEEGNALKLRQKIEEDSCKPDCETH 371
R + YNT+I + +S ++++E P T+
Sbjct: 350 RLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTY 409
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
+ + C RM+ M+ L+ EM KG P + + L + L K
Sbjct: 410 SILIDGFCKTNRMEKAMM---LLEEMDEKGFPPCPAAYCSLIDALGK 453
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 14/212 (6%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
++G + TY+ +++ K+ + L++E+DE G+ A A
Sbjct: 399 ESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDE--KGFPPCPA-----------AYC 445
Query: 183 VLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+D L K A ++F + K +C S S++++ V+I K + D A EM +
Sbjct: 446 SLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKL 505
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G +PD +Y + R + T++ MQE GC P + + I+++ L K + A
Sbjct: 506 GCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRA 565
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+++ MK D Y++++ LS A F
Sbjct: 566 MEMLSNMKQSTVRPDVVSYNTVLGALSHAGMF 597
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 109/245 (44%), Gaps = 31/245 (12%)
Query: 130 PETY--NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT 187
P+T N M+ LGK+ + +L +E+ L S+ +T+++ L
Sbjct: 333 PDTVVMNNMINFLGKAGRLDDAMKLFQEMGTL-RCIPSVVTYNTIIKAL----------- 380
Query: 188 LVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
++ + F + K+ IS SS + +LI G+CKT + + A ++EM + GF P
Sbjct: 381 FESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPC 440
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
+Y I+ + K + +E++E S +++ L KA ++ +A+ +++
Sbjct: 441 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFD 500
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
+M C D Y++L+ L++ M+ AL ++++E C P
Sbjct: 501 EMNKLGCAPDVYAYNALMSGLAR-------TGMLD---------EALSTMRRMQEHGCIP 544
Query: 367 DCETH 371
D ++
Sbjct: 545 DINSY 549
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 84/202 (41%), Gaps = 27/202 (13%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL------ 176
+ G+ P Y ++++ALGK+K++ L EL +E+ E + G S + +++ L
Sbjct: 434 EKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE-NCGSSSARVYAVMIKHLGKAGRL 492
Query: 177 -----------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQIFDV 217
D A + LM L + + A + ++ CI +++
Sbjct: 493 DDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIP-DINSYNI 551
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
+++G KT A + + M Q PD VSY + F + ++EM G
Sbjct: 552 ILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLG 611
Query: 278 CKPSVITCTIVMHALEKAKQIY 299
+ +IT + ++ A+ K Y
Sbjct: 612 FEYDLITYSSILEAIGKVDHEY 633
>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
Length = 715
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 117/259 (45%), Gaps = 23/259 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+VL++ + K A +V ++ K C + ++V+I+G C+ + D A++ + +
Sbjct: 215 TVLLEAVCKSTGFGQAMEVLDEMRAKGCTP-NIVTYNVIINGMCREGRVDDAREFLNRLS 273
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+GF PD VSYT ++ C K + V+ EM EK C P+ +T +++ + +
Sbjct: 274 SYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVE 333
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
A++V E+M C +T+ + N +I++ C + +A + +
Sbjct: 334 RAIQVLEQMSGHGCAANTT----------------LCNIVINTICKQGRVDDAFQFLNNM 377
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
C PD ++ LK C +R +D L++EM+ K P E T L +K
Sbjct: 378 GSYGCSPDTISYTTVLKGLCRAERWEDAK---ELLKEMVRKNCPPNEVTFNTFICILCQK 434
Query: 420 SL-GNAKERIDELLTHATE 437
L A I+++ H E
Sbjct: 435 GLIEQATMLIEQMSEHGCE 453
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 104/230 (45%), Gaps = 23/230 (10%)
Query: 184 LMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ L +R + A +V + ++ ++ L+ G+C+ + D A++ + M
Sbjct: 115 LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM---P 171
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
+PD +YT I C + L +M +GC+PSV+T T+++ A+ K+ +A+
Sbjct: 172 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM 231
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362
+V ++M++ C + + YN +I+ C +A + ++
Sbjct: 232 EVLDEMRAKGCTPN----------------IVTYNVIINGMCREGRVDDAREFLNRLSSY 275
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+PD ++ LK C KR +D V L EM+ K +P E T ML
Sbjct: 276 GFQPDTVSYTTVLKGLCAAKRWED---VEELFAEMMEKNCMPNEVTFDML 322
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 23/226 (10%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ + +++I+ CK + D A + + M +G SPD +SYT ++ CR + + L
Sbjct: 350 NTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELL 409
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
KEM K C P+ +T + L + I +A + E+M C
Sbjct: 410 KEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGC----------------E 453
Query: 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
V + YN +++ CV+ +AL+L + CKP+ T+ L C+ +R+
Sbjct: 454 VNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAA-- 508
Query: 391 LNLMREMLSKGIVPQESTHKMLAEELEKKSLGN-AKERIDELLTHA 435
L+ EML K P T +L +K L + A E +++++ H
Sbjct: 509 -ELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 553
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 102/224 (45%), Gaps = 27/224 (12%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ L+ G C + D A + + EM Q +P+ V++ + +C++ + +++M
Sbjct: 491 YTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMM 550
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
E GC P++IT ++ + K EAL++ + S+ D YSS+I +LS+ R
Sbjct: 551 EHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVE 610
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+IYN ++ + C R A+ + + C P+ T+ +
Sbjct: 611 EAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLI 670
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
+ ++ +K+ +L+RE+ S+G++ +K L EE K
Sbjct: 671 EGLANEDFLKE---TRDLLRELCSRGVL-----NKNLLEEWRPK 706
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 96/224 (42%), Gaps = 25/224 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L++G+C + D A++ + P+ ++YT + C + L EM
Sbjct: 459 YNALVNGFCVQGRVD---SALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEML 515
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
+K C P+V+T +++ + + EA+++ E+M C + Y++L+
Sbjct: 516 QKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSE 575
Query: 325 -------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++S V + Y+++I A+K+ +++ +P + + L
Sbjct: 576 EALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKIL 635
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
C K+ DG ++ M+S G +P E T+ L E L +
Sbjct: 636 LALC-KRCNTDG--AIDFFAYMVSNGCMPNELTYITLIEGLANE 676
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 20/182 (10%)
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-----A 330
+G P V CT ++ L + + +A +V + D Y++L+ + A
Sbjct: 103 RGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDA 162
Query: 331 VRFLI-----------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC 379
R LI Y +I C R G AL L + C+P T+ L+ C
Sbjct: 163 ARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVC 222
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATEQ 438
M VL+ EM +KG P T+ ++ + ++ + +A+E ++ L ++ +
Sbjct: 223 KSTGFGQAMEVLD---EMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQP 279
Query: 439 RT 440
T
Sbjct: 280 DT 281
>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
Length = 650
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 134/329 (40%), Gaps = 46/329 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMS------TVM 173
TY+ ++ L S + KE+ E + NGY+ + VM
Sbjct: 292 TYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVM 351
Query: 174 RRLDTRAM---SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKS 228
+ R + ++L+ L + V A ++ L KDC + S + VL+HG CK
Sbjct: 352 EKEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCA-DSMTYGVLVHGLCKNGYL 410
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+ A ++E D +Y+ I CRE +V L +M + GCKP+ C V
Sbjct: 411 NKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAV 470
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--------------- 333
++ +A ++ +AL+ + M S C Y++LI LSKA RF
Sbjct: 471 INGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGW 530
Query: 334 ----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ Y+ +++ C + AL L + E KPD + H + C +++D
Sbjct: 531 KPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVED--- 587
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEK 418
L L EM + VP TH L E K
Sbjct: 588 ALQLYSEMKQRKCVPNLVTHNTLMEGFYK 616
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 79/366 (21%), Positives = 140/366 (38%), Gaps = 82/366 (22%)
Query: 131 ETYNAMVEALGKSKKF-------GLMWELVKEIDELS----------NGYVSLA-----A 168
+TYN +++ + K+F MWE D S NGY+S A
Sbjct: 150 QTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDE 209
Query: 169 MSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTR 226
M D ++L+D K+ + +A +++ + S+ I ++V+I+G CK
Sbjct: 210 MPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCG 269
Query: 227 KS-----------------------------------DYAQKAMKEMFQHGFSPDGVSYT 251
K D A + KEM ++G SPD V Y
Sbjct: 270 KFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYN 329
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ Y R + K M+++GC+ +V++ I++ L + ++ EA+ ++E +
Sbjct: 330 TMLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEK 388
Query: 312 DCLTDTSFYSSLIF------ILSKAVRFL-------------IYNTMISSACVRSEEGNA 352
DC D+ Y L+ L+KA+ L Y++MI+ C
Sbjct: 389 DCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEV 448
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ ++ + CKP+ + +++D L M+SKG P T+ L
Sbjct: 449 AGVLDQMTKHGCKPNPHVCNAVINGFVRASKLED---ALRFFGNMVSKGCFPTVVTYNTL 505
Query: 413 AEELEK 418
L K
Sbjct: 506 INGLSK 511
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 104/246 (42%), Gaps = 21/246 (8%)
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
R+ + L++ L++ N A FL F+ +S + Q +++LI C+ ++ D A++ +
Sbjct: 115 RSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNW 174
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M++ GFSPD SY I + EM E+G P V I++ K
Sbjct: 175 MWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGD 234
Query: 298 IYEALKVYEKM-KSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYN 337
I A +++E++ K + Y+ +I L K +F Y+
Sbjct: 235 ILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYS 294
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
T+I C A ++ +++ E+ PD + L R+++ + + +M +
Sbjct: 295 TLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKE 354
Query: 398 LSKGIV 403
+ +V
Sbjct: 355 GCRTVV 360
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/302 (19%), Positives = 118/302 (39%), Gaps = 38/302 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
GY HTP ++ +++ L K LV + + + + T + +
Sbjct: 38 GYSHTPYVFHHILKRLFDPK-------LVAHVSRI------VELIRTQKCKCPEDVALTV 84
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
+ K + A +F + + I ++ L++ ++ K D A+ G
Sbjct: 85 IKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMG 144
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
SP+ +Y I+ CR+K F K L M E+G P V + ++++L K + +AL
Sbjct: 145 LSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDAL 204
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL--------------------IYNTMISS 342
K++++M D + Y+ LI K L YN MI+
Sbjct: 205 KLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMING 264
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C + + ++ +++++ D T++ + C + DG + +EM G+
Sbjct: 265 LCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNL-DG--ATRVYKEMAENGV 321
Query: 403 VP 404
P
Sbjct: 322 SP 323
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 11/159 (6%)
Query: 161 NGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI------ 214
NG+V + + +R T+V N++ + +F + +L ++
Sbjct: 472 NGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWK 531
Query: 215 -----FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+ +L++G C+ +K D A + + GF PD + I C
Sbjct: 532 PNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQL 591
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
EM+++ C P+++T +M K + A K+++ +
Sbjct: 592 YSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHI 630
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 83/184 (45%), Gaps = 21/184 (11%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL 166
K+ +AL+ F +K G T TYN ++ L K+++F + LVKE+ L G+
Sbjct: 479 KLEDALRFFGNMVSK---GCFPTVVTYNTLINGLSKAERFSEAYALVKEM--LHKGW--- 530
Query: 167 AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKT 225
+ + S+LM+ L + + A ++ + + ++ +++IHG C +
Sbjct: 531 --------KPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSS 582
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV----DYTLKEMQEKGCKPS 281
K + A + EM Q P+ V++ +E + + +DF + D+ L+ C
Sbjct: 583 GKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQSWSSSNCYYM 642
Query: 282 VITC 285
TC
Sbjct: 643 EHTC 646
>gi|15236834|ref|NP_194398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334186944|ref|NP_001190849.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213515|sp|Q9SZ10.1|PP338_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g26680, mitochondrial; Flags: Precursor
gi|4455191|emb|CAB36514.1| putative protein [Arabidopsis thaliana]
gi|7269520|emb|CAB79523.1| putative protein [Arabidopsis thaliana]
gi|332659836|gb|AEE85236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332659837|gb|AEE85237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 521
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 155/360 (43%), Gaps = 69/360 (19%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAA-------- 168
F WAKT+ H+ ET+ ++ L K++KF +++++ L NG V L A
Sbjct: 102 FNWAKTRNPGSHSLETHAIVLHTLTKNRKFKSAESILRDV--LVNGGVDLPAKVFDALLY 159
Query: 169 ----------------------------MSTVMRRLD------TRAMSVLMDTLVKRNSV 194
T M+ D + + M +L+ + V
Sbjct: 160 SYRECDSTPRVFDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRV 219
Query: 195 AHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A + + + + C IS + ++++ G+C++ K D + +++M + GF VSY
Sbjct: 220 DIALRFYREMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTL 279
Query: 254 IEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I +C EK LK M K G +P+V+T ++H +A ++ EA KV+ +MK+ +
Sbjct: 280 IAGHC-EKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVN 338
Query: 313 CLTDTSFYSSLIFILSK------AVRF-------------LIYNTMISSACVRSEEGNAL 353
+T Y++LI S+ A RF L YN +I C +++ A
Sbjct: 339 VAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAA 398
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
+ +++++++ P+ T + + C +K G L + M+ G P E T ML
Sbjct: 399 QFVKELDKENLVPNSSTFSALIMGQCVRKNADRG---FELYKSMIRSGCHPNEQTFNMLV 455
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
K+ + +S F LI G C + +D + K M + G P+ ++ + +CR +DF
Sbjct: 406 KENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFD 465
Query: 265 KVDYTLKEM 273
L+EM
Sbjct: 466 GASQVLREM 474
>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 148/340 (43%), Gaps = 55/340 (16%)
Query: 108 VVEALKCFCFTWAKTQTGYMHTP-ETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VS 165
V +A++CF T + + P +T ++E L + + F L+W+ KE+ L GY S
Sbjct: 82 VRDAVQCFRLT----KQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEV--LECGYPAS 135
Query: 166 LAAMSTVMRRL----DTRAMSVLMDTLVK---RNSVAHAYKVFLKFKDCISLSSQIFDVL 218
L + +M+R + R + D + K R SV F+ L
Sbjct: 136 LYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVS------------------FNTL 177
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
I+G+ K D + M G PD +Y+ I C+E + + EM + G
Sbjct: 178 INGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGL 237
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-----AVRF 333
P+ +T T ++H K +++ A+++Y++M S D Y++LI+ L K V
Sbjct: 238 VPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHD 297
Query: 334 LI--------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC 379
LI Y T+I +C + AL+LR K+ ++S + D + + C
Sbjct: 298 LIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLC 357
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
+ R D ++REMLS G+ P T+ M+ E KK
Sbjct: 358 REGRASDAE---KMLREMLSVGLKPDNGTYTMIINEFCKK 394
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 117/275 (42%), Gaps = 31/275 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L AM + D S+L++ L K +
Sbjct: 164 KWGLRPSVV-SFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKL 222
Query: 195 AHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A ++F + D + + + F LIHG CK K D A + K+M G SPD ++Y
Sbjct: 223 DEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTL 282
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I C++ + ++V + EM G KP I+ T ++ K + AL++ KM +
Sbjct: 283 IYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESI 342
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
D Y++L IS C +A K+ +++ KPD T+
Sbjct: 343 RLDDVAYTAL----------------ISCLCREGRASDAEKMLREMLSVGLKPDNGTYTM 386
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+ C K +D L+REM G +P T
Sbjct: 387 IINEFCKK---RDSKTASKLLREMQRDGPLPGVVT 418
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 14/154 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K + + +L+ E+ + NG + D + + L+D K
Sbjct: 278 TYNTLIYGLCKKGELKQVHDLIDEM--IMNGL-----------KPDKISYTTLIDGSCKE 324
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A ++ K ++ I L + LI C+ ++ A+K ++EM G PD +Y
Sbjct: 325 GDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTY 384
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
T I +C+++D + L+EMQ G P V+T
Sbjct: 385 TMIINEFCKKRDSKTASKLLREMQRDGPLPGVVT 418
>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 418
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 143/348 (41%), Gaps = 49/348 (14%)
Query: 98 LRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEID 157
L Y V +A++CF T + + +T ++E L K K F L+W+ KEI
Sbjct: 72 LMTAYLESGFVHDAIQCFRLT---KKHKFWVPFDTCRKVLEHLMKLKYFKLVWDFYKEI- 127
Query: 158 ELSNGY-VSLAAMSTVMRRL-----DTRAMSV--------LMDTLVKRNSVAHAYKVFLK 203
L GY SL + VM R RA SV L ++V N++ + Y
Sbjct: 128 -LECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGD 186
Query: 204 FKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
+ L S + + VLI+G CK K D A + EM G P+GV++T
Sbjct: 187 LDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTT 246
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I+ +C+ K+M +G P +IT +++ L K + + + ++M +
Sbjct: 247 LIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNG 306
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
D + Y T+I C + A + R+++ ++S + D +
Sbjct: 307 LKPDK----------------ITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYT 350
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ C + R D + REMLS G+ P T+ M+ E KK
Sbjct: 351 ALVSGLCQEGRADDAE---KMFREMLSVGLKPDNGTYTMIINEFCKKG 395
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 113/271 (41%), Gaps = 31/271 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L AM + D SVL++ L K + V
Sbjct: 164 KWGLRPSVV-SFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKV 222
Query: 195 AHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A ++F + D + + F LI CK D A + K+M GFSPD ++Y
Sbjct: 223 DEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTL 282
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I C++ D ++V + EM G KP IT T ++ K + A + ++M +
Sbjct: 283 IYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESI 342
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
D Y++L +S C +A K+ +++ KPD T+
Sbjct: 343 RLDNVAYTAL----------------VSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTM 386
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ C K ++ L++EM G VP
Sbjct: 387 IINEFCKKGDVRTAS---RLLKEMQRDGHVP 414
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 18/156 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELS-NGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
TYN ++ L K G + ++ IDE+S NG + D + L+D K
Sbjct: 278 TYNTLIYGLCKK---GDLKQVRALIDEMSMNGL-----------KPDKITYTTLIDGCCK 323
Query: 191 RNSVAHAYKVFLK--FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
+ A++ F K K+ I L + + L+ G C+ ++D A+K +EM G PD
Sbjct: 324 EGDLETAFE-FRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNG 382
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
+YT I +C++ D R LKEMQ G P V+T
Sbjct: 383 TYTMIINEFCKKGDVRTASRLLKEMQRDGHVPCVVT 418
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 24/199 (12%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KE+ + G+ + + +C+E + R+ + + G +PSV++ +M+ +
Sbjct: 125 KEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRL 184
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ E ++ M + D YS L I+ C S+ A +L
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVL----------------INGLCKESKVDEANEL 228
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLA 413
++ + P+ T + + C K+GM+ + + ++MLS+G P T+ L
Sbjct: 229 FNEMLDRGLVPNGVTFTTLIDVHC-----KNGMVDSAMEIYKQMLSQGFSPDLITYNTLI 283
Query: 414 EELEKKS-LGNAKERIDEL 431
L KK L + IDE+
Sbjct: 284 YGLCKKGDLKQVRALIDEM 302
>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
Length = 457
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 129/327 (39%), Gaps = 42/327 (12%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA +Q Y H +YN ++E L KS + D + Y + V
Sbjct: 4 FQWAGSQVHYNHGTLSYNYLLEVLAKSGR----------CDHVYGTYNDMLGAGCVP--- 50
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFD--VLIHGWCKTRKSDYAQ 232
+T L+ +L + A VF + + C S +F +LI G C+ +K D A
Sbjct: 51 NTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGC---SPNVFSYSILIAGLCRGQKVDEAA 107
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ + EM G P+ V+Y + C+ ++ M +GC P + +++
Sbjct: 108 ELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGF 167
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------------- 333
K + EA +++E+M C+ Y+SL+ S+ F
Sbjct: 168 SKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNI 227
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+N ++ C + A +L ++ C PD ++ ++ C K + + L
Sbjct: 228 FTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQ---RL 284
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKS 420
+REM+ G+ P ++ +L + K
Sbjct: 285 LREMIRSGVGPDIVSYNILIDGYSKSG 311
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 99/233 (42%), Gaps = 23/233 (9%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI------------DELSNGYVSLAAMS 170
+ G + T TYN+++ + +FG + L K++ + L +G+ + M
Sbjct: 185 EKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMV 244
Query: 171 TV------MRRL----DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLI 219
MR L D + + LM + + A ++ + + + +++LI
Sbjct: 245 EAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILI 304
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
G+ K+ D+A K E+ + G PD SY+ I+ CR K+M G
Sbjct: 305 DGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSA 364
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
P ++ L + +++ E+ ++++ M +C+ Y+ L++ L KA R
Sbjct: 365 PDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKR 417
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + ++L+D K ++ HA K+F + K + + + +I C+ K A
Sbjct: 296 DIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVF 355
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
K+M +G +PD + CR + + + M + C P + ++M+ L KA
Sbjct: 356 KDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKA 415
Query: 296 KQIYEALKVYEKM 308
K+ + +++ ++
Sbjct: 416 KRSDDVCEIFHEL 428
>gi|224081016|ref|XP_002306265.1| predicted protein [Populus trichocarpa]
gi|222855714|gb|EEE93261.1| predicted protein [Populus trichocarpa]
Length = 548
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 83/374 (22%), Positives = 149/374 (39%), Gaps = 93/374 (24%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS--------- 182
TYN M++ L K ++F + W+L+ E+D+ N + ++RRL ++
Sbjct: 142 TYNLMIDILAKVRQFDVCWQLIVEMDQ-RNVKPTSETFFVLIRRLVAAGLTRQAIRAFDD 200
Query: 183 ---------------VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRK 227
L+DTL K V ++F K K S + +++ VLI+GWCK +
Sbjct: 201 MESFVSEPVNETHFCFLLDTLCKYGYVKVGVEIFNKRKHRFSPNVKMYTVLIYGWCKIGR 260
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----------EKDFRKVDYTLKEMQEKG 277
D A++ +KE + G V+Y + CR E+ + EM+E+G
Sbjct: 261 IDMAERFLKETGERGIEATVVTYNVLLNGICRRASLHPESRFERTITLAENLFDEMRERG 320
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------------- 324
+P V + +IV+H +A + L + MK Y+S++
Sbjct: 321 IEPDVTSFSIVLHVYSRAHKPELTLDKLKLMKEKGICPSVVTYTSVVKCLCSCGRIEDAE 380
Query: 325 FILSKAVRFLIYNTMISSACV------RSEEGNALKLRQKIEED---------------- 362
+L + VR + T ++ C R + +ALKL +K+ ED
Sbjct: 381 ELLGEMVRNGVSRTAVTYNCFFKEYMGRKDAESALKLYKKMREDGLGSLGLHSYNILLRM 440
Query: 363 --------------------SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
PD +++ + C K++ ++ EM+ KG+
Sbjct: 441 FMMLNRLDIVNEIWEDLKSSGLGPDLDSYTMLIHGLCEKEKWREA---CKFFVEMIEKGL 497
Query: 403 VPQESTHKMLAEEL 416
+PQ+ T + L + L
Sbjct: 498 LPQKVTFETLYKGL 511
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 127/291 (43%), Gaps = 32/291 (10%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY A++ A ++KK +L++E+ E + +VL+D L K
Sbjct: 181 TYTALIAAFARAKKLEEAMKLLEEMRERGCPP-------------NLVTYNVLVDALCKL 227
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ V A V K + + + F+ L+ G+CK D A+K + M G P+ V+Y
Sbjct: 228 SMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTY 287
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ I+ C+ + F + L+EM+ +G P T + ++H L KA +I EA ++ +M
Sbjct: 288 SALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAG 347
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
C D YSS+I K+ + L A K Q++ + PD T
Sbjct: 348 SGCTPDVVVYSSIIHAFCKSGKLL----------------EAQKTLQEMRKQRKSPDVVT 391
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ + C ++ + ++L M+E S ++P T+ + L K +
Sbjct: 392 YNTVIDGLCKLGKIAEAQVILEQMQE--SGDVLPDVVTYSTVINGLCKSDM 440
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 20/199 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKA 234
D + ++D L K +A A + + ++ + + + +I+G CK+ AQK
Sbjct: 388 DVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKL 447
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ M + G +PD V+YT I+ C+ + +Y L+ M+ GC P+V+T T ++ L K
Sbjct: 448 LDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCK 507
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV--RSEEGNA 352
A+++ EA +V E+M++ C + + YNTM++ CV R +E
Sbjct: 508 ARKVDEAERVMEEMRNAGCPPN----------------LVTYNTMVNGLCVSGRIKEAQQ 551
Query: 353 LKLRQKIEEDSCKPDCETH 371
L R K C PD T+
Sbjct: 552 LVQRMKDGRAECSPDAATY 570
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 104/228 (45%), Gaps = 23/228 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++++I G+C A + ++EM GF+PD ++T I D D + ++
Sbjct: 115 YNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDL---DGAMDHLR 171
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
GC P+V+T T ++ A +AK++ EA+K+ E+M+ C + +
Sbjct: 172 SMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPN----------------LV 215
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN ++ + C S G A + +K+ E P+ T + C + + D +L +
Sbjct: 216 TYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGI- 274
Query: 395 REMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDELLTHATEQRTF 441
M++KG+ P T+ L + L K + AKE ++E+ T F
Sbjct: 275 --MVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAF 320
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 75/187 (40%), Gaps = 22/187 (11%)
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
GFS S+ ++ R K R+ + C+P V + IV+ A ++ A
Sbjct: 72 GFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAA 131
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
L++ E+MKS D ++ +I ++ A G+ +
Sbjct: 132 LELLEEMKSAGFAPDAFTHTPIITAMANA-------------------GDLDGAMDHLRS 172
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
C P+ T+ + K++++ M +L MRE +G P T+ +L + L K S+
Sbjct: 173 MGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRE---RGCPPNLVTYNVLVDALCKLSM 229
Query: 422 GNAKERI 428
A + +
Sbjct: 230 VGAAQDV 236
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 22/214 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI+G C + ++ A K+M Q+G P+ V+Y I+ C+++ L EM
Sbjct: 201 YNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMV 260
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
+G P IT ++H L Q+ EA +++++M+ + C D Y+ +I L K
Sbjct: 261 GRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVN 320
Query: 330 -AVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
A FL Y T++ C + A++L +K+E+ CKPD + +
Sbjct: 321 DAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTII 380
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
C + + D M + EM+ +GI P T+
Sbjct: 381 DSLCKDRLVNDAM---EFLSEMVDRGIPPNAVTY 411
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/309 (21%), Positives = 136/309 (44%), Gaps = 35/309 (11%)
Query: 128 HTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
H P+ +YN ++ L S + + K++++ NG + + + ++
Sbjct: 194 HEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQ--NGC-----------KPNVVTYNTII 240
Query: 186 DTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
D+L K V A + I + ++ ++HG C + + A + K M Q+G
Sbjct: 241 DSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCK 300
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD V+Y I+ +++ L EM ++G P V+T T ++H L Q+ EA+++
Sbjct: 301 PDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRL 360
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
++KM+ C D + YNT+I S C +A++ ++ +
Sbjct: 361 FKKMEQKGCKPDV----------------VAYNTIIDSLCKDRLVNDAMEFLSEMVDRGI 404
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNA 424
P+ T++ L C+ ++ + L +EM+ + ++P T +L + L ++ + +
Sbjct: 405 PPNAVTYSTILHGFCNLGQLDEAT---QLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSE 461
Query: 425 KERIDELLT 433
+ E +T
Sbjct: 462 ARWVFETMT 470
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 106/243 (43%), Gaps = 20/243 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D A + ++D+L K V A + + D I ++ + ++HG+C + D A +
Sbjct: 372 DVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLF 431
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KEM P+ ++++ ++ C+E + + + M EKG +P++ T +M+
Sbjct: 432 KEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLR 491
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ EA KV+E M C D +S YN +I+ C A L
Sbjct: 492 CKMNEARKVFEIMVGKGCAPD--LHS--------------YNILINGYCNSRRMDKAKAL 535
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
++ P+ T+ +K C+ R+ D L ++M S G++P T+ +L
Sbjct: 536 LTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQ---ELFKKMCSSGMLPTLMTYSILLNG 592
Query: 416 LEK 418
L K
Sbjct: 593 LCK 595
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 108/253 (42%), Gaps = 34/253 (13%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+T S+L+D L + V+ A VF + + + ++ L++G+C K + A+K
Sbjct: 442 NTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVF 501
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ M G +PD SY I YC + K L +M K P+ +T +M L
Sbjct: 502 EIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYV 561
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ +A ++++KM S L + Y+ +++ C ALKL
Sbjct: 562 GRLLDAQELFKKMCSSGMLP----------------TLMTYSILLNGLCKHGHLDEALKL 605
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV---LNLMREMLSK----GIVPQEST 408
+ ++E +PD + + +GM + L + + + SK GI P T
Sbjct: 606 FKSMKEKKLEPDIILYT----------ILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRT 655
Query: 409 HKMLAEELEKKSL 421
+ ++ + L K+ L
Sbjct: 656 YNVMIKGLLKEGL 668
>gi|11079485|gb|AAG29197.1|AC078898_7 hypothetical protein [Arabidopsis thaliana]
Length = 441
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 91/382 (23%), Positives = 164/382 (42%), Gaps = 81/382 (21%)
Query: 62 SLASWVESLKLNEQSRISSHA------LSEDHETDVDKVSEILRKRYPSPDKVVEALKC- 114
S + W+ + N + ++S+A S++ +V K++ ++ K S + V +AL
Sbjct: 45 SFSDWISRIP-NFKHNVTSYASLVTLLCSQEIPYEVPKITILMIK---SCNSVRDALFVV 100
Query: 115 -FCFTWAKT---QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMS 170
FC T K + Y TP+ YN ++ +L + FGL+ E
Sbjct: 101 DFCRTMRKGDSFEIKYKLTPKCYNNLLSSLAR---FGLVEE------------------- 138
Query: 171 TVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDY 230
M+RL T + +D +S F+ L++G+CK
Sbjct: 139 --MKRLYTEML-----------------------EDLVSPDIYTFNTLVNGYCKLGYVVE 173
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A++ + + Q G PD +YT FI +CR K+ KEM + GC + ++ T +++
Sbjct: 174 AKQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIY 233
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEG 350
L +AK+I EAL + KMK D+C + VR Y +I + C ++
Sbjct: 234 GLFEAKKIDEALSLLVKMKDDNCCPN--------------VR--TYTVLIDALCGSGQKS 277
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A+ L +++ E KPD + ++ C + + L+ ML G++P T+
Sbjct: 278 EAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEAS---GLLEHMLENGLMPNVITYN 334
Query: 411 MLAEELEKKSLGNAKERIDELL 432
L + KK++ A + ++L
Sbjct: 335 ALIKGFCKKNVHKAMGLLSKML 356
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 39/176 (22%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD---- 177
TQ G +Y ++ L ++KK IDE A+S +++ D
Sbjct: 217 TQNGCHRNEVSYTQLIYGLFEAKK----------IDE---------ALSLLVKMKDDNCC 257
Query: 178 --TRAMSVLMDTLVKRNSVAHAYKVF-------LKFKDCISLSSQIFDVLIHGWCKTRKS 228
R +VL+D L + A +F +K DC+ + VLI +C
Sbjct: 258 PNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCM------YTVLIQSFCSGDTL 311
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
D A ++ M ++G P+ ++Y I+ +C+ K+ K L +M E+ P +IT
Sbjct: 312 DEASGLLEHMLENGLMPNVITYNALIKGFCK-KNVHKAMGLLSKMLEQNLVPDLIT 366
>gi|413932621|gb|AFW67172.1| PHD finger protein [Zea mays]
Length = 1166
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 130/294 (44%), Gaps = 39/294 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALG----KSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
F WA Q GY H P TYN +++ L KS++FG++ ++ + + V + + +
Sbjct: 490 FAWASQQDGYNHEPTTYNDIIDILSGTRYKSRQFGVLCNVLDHMKRHGSRSVPVEDLLEI 549
Query: 173 -----------MRRL------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209
MR+L +T A++VL+D K V A VF + K +
Sbjct: 550 LRAYTEKHLTHMRKLAKKRRVRMRTPPETDALNVLLDAFCKCGMVKEAEAVFGRVKRKLL 609
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+++ + L GWC+ R A K ++EM Q +P+ +Y I +C +
Sbjct: 610 GNAETYSTLFFGWCRARDPKKAMKVLEEMIQMKHTPESFTYVAAIISFCSAGLVSEAREL 669
Query: 270 LKEMQEKG---CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-- 324
+ M+ +G P+ T +I++ AL KA ++ E ++ M+S C+ D + Y LI
Sbjct: 670 FEFMRTEGLTISSPTAKTYSIMIVALAKADRMEECFELLSDMRSCGCMPDVTTYKDLIEG 729
Query: 325 --FILSKAVRFLIYNTMISSA-----CVRSEEGNALKLRQKIEEDSCKPDCETH 371
+ + + + M + + +AL+L +++ E C+P T+
Sbjct: 730 MCLVGKLDAAYRVLDEMGRAGFPPDIVTHRKADDALELCERMIEAHCEPSVHTY 783
>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 148/340 (43%), Gaps = 55/340 (16%)
Query: 108 VVEALKCFCFTWAKTQTGYMHTP-ETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VS 165
V +A++CF T + + P +T ++E L + + F L+W+ KE+ L GY S
Sbjct: 82 VRDAVQCFRLT----KQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEV--LECGYPAS 135
Query: 166 LAAMSTVMRRL----DTRAMSVLMDTLVK---RNSVAHAYKVFLKFKDCISLSSQIFDVL 218
L + +M+R + R + D + K R SV F+ L
Sbjct: 136 LYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVS------------------FNTL 177
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
I+G+ K D + M G PD +Y+ I C+E + + EM + G
Sbjct: 178 INGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGL 237
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-----AVRF 333
P+ +T T ++H K +++ A+++Y++M S D Y++LI+ L K V
Sbjct: 238 VPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHD 297
Query: 334 LI--------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC 379
LI Y T+I +C + AL+LR K+ ++S + D + + C
Sbjct: 298 LIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLC 357
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
+ R D ++REMLS G+ P T+ M+ E KK
Sbjct: 358 REGRAGDAE---KMLREMLSVGLKPDNGTYTMIINEFCKK 394
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 118/275 (42%), Gaps = 31/275 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L AM + D S+L++ L K +
Sbjct: 164 KWGLRPSVV-SFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKL 222
Query: 195 AHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A ++F + D + + + F LIHG CK K D A + K+M G SPD ++Y
Sbjct: 223 DEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTL 282
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I C++ + ++V + EM G KP I+ T ++ K + AL++ KM +
Sbjct: 283 IYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESI 342
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
D Y++L IS C G+A K+ +++ KPD T+
Sbjct: 343 RLDDVAYTAL----------------ISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTM 386
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+ C K +D L+REM G VP T
Sbjct: 387 IINEFCKK---RDSKTASKLLREMQRDGPVPGVVT 418
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 14/154 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K + + +L+ E+ + NG + D + + L+D K
Sbjct: 278 TYNTLIYGLCKKGELKQVHDLIDEM--IMNGL-----------KPDKISYTTLIDGSCKE 324
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A ++ K ++ I L + LI C+ ++ A+K ++EM G PD +Y
Sbjct: 325 GDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTY 384
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
T I +C+++D + L+EMQ G P V+T
Sbjct: 385 TMIINEFCKKRDSKTASKLLREMQRDGPVPGVVT 418
>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
Length = 684
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 117/259 (45%), Gaps = 23/259 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+VL++ + K A +V ++ K C + ++V+I+G C+ + D A++ + +
Sbjct: 184 TVLLEAVCKSTGFGQAMEVLDEMRAKGCTP-NIVTYNVIINGMCREGRVDDAREFLNRLS 242
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+GF PD VSYT ++ C K + V+ EM EK C P+ +T +++ + +
Sbjct: 243 SYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVE 302
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
A++V E+M C +T+ + N +I++ C + +A + +
Sbjct: 303 RAIQVLEQMSGHGCAANTT----------------LCNIVINTICKQGRVDDAFQFLNNM 346
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
C PD ++ LK C +R +D L++EM+ K P E T L +K
Sbjct: 347 GSYGCSPDTISYTTVLKGLCRAERWEDAK---ELLKEMVRKNCPPNEVTFNTFICILCQK 403
Query: 420 SL-GNAKERIDELLTHATE 437
L A I+++ H E
Sbjct: 404 GLIEQATMLIEQMSEHGCE 422
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 104/230 (45%), Gaps = 23/230 (10%)
Query: 184 LMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ L +R + A +V + ++ ++ L+ G+C+ + D A++ + M
Sbjct: 84 LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM---P 140
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
+PD +YT I C + L +M +GC+PSV+T T+++ A+ K+ +A+
Sbjct: 141 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM 200
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362
+V ++M++ C + + YN +I+ C +A + ++
Sbjct: 201 EVLDEMRAKGCTPN----------------IVTYNVIINGMCREGRVDDAREFLNRLSSY 244
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+PD ++ LK C KR +D V L EM+ K +P E T ML
Sbjct: 245 GFQPDTVSYTTVLKGLCAAKRWED---VEELFAEMMEKNCMPNEVTFDML 291
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 23/226 (10%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ + +++I+ CK + D A + + M +G SPD +SYT ++ CR + + L
Sbjct: 319 NTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELL 378
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
KEM K C P+ +T + L + I +A + E+M C
Sbjct: 379 KEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGC----------------E 422
Query: 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
V + YN +++ CV+ +AL+L + CKP+ T+ L C+ +R+
Sbjct: 423 VNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAA-- 477
Query: 391 LNLMREMLSKGIVPQESTHKMLAEELEKKSLGN-AKERIDELLTHA 435
L+ EML K P T +L +K L + A E +++++ H
Sbjct: 478 -ELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 522
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 101/224 (45%), Gaps = 27/224 (12%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ L+ G C + D A + + EM Q +P+ V++ + +C++ + +++M
Sbjct: 460 YTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMM 519
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
E GC P++IT ++ + EAL++ + S+ D YSS+I +LS+ R
Sbjct: 520 EHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVE 579
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+IYN ++ + C R A+ + + C P+ T+ +
Sbjct: 580 EAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLI 639
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
+ ++ +K+ +L+RE+ S+G++ +K L EE K
Sbjct: 640 EGLANEDFLKE---TRDLLRELCSRGVL-----NKNLLEEWRPK 675
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 96/224 (42%), Gaps = 25/224 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L++G+C + D A++ + P+ ++YT + C + L EM
Sbjct: 428 YNALVNGFCVQGRVD---SALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEML 484
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
+K C P+V+T +++ + + EA+++ E+M C + Y++L+
Sbjct: 485 QKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSE 544
Query: 325 -------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++S V + Y+++I A+K+ +++ +P + + L
Sbjct: 545 EALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKIL 604
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
C K+ DG ++ M+S G +P E T+ L E L +
Sbjct: 605 LALC-KRCNTDG--AIDFFAYMVSNGCMPNELTYITLIEGLANE 645
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 20/182 (10%)
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-----A 330
+G P V CT ++ L + + +A +V + D Y++L+ + A
Sbjct: 72 RGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDA 131
Query: 331 VRFLI-----------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC 379
R LI Y +I C R G AL L + C+P T+ L+ C
Sbjct: 132 ARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVC 191
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATEQ 438
M VL+ EM +KG P T+ ++ + ++ + +A+E ++ L ++ +
Sbjct: 192 KSTGFGQAMEVLD---EMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQP 248
Query: 439 RT 440
T
Sbjct: 249 DT 250
>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
Length = 684
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 117/259 (45%), Gaps = 23/259 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+VL++ + K A +V ++ K C + ++V+I+G C+ + D A++ + +
Sbjct: 184 TVLLEAVCKSTGFGQAMEVLDEMRAKGCTP-NIVTYNVIINGMCREGRVDDAREFLNRLS 242
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+GF PD VSYT ++ C K + V+ EM EK C P+ +T +++ + +
Sbjct: 243 SYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVE 302
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
A++V E+M C +T+ + N +I++ C + +A + +
Sbjct: 303 RAIQVLEQMSGHGCAANTT----------------LCNIVINTICKQGRVDDAFQFLNNM 346
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
C PD ++ LK C +R +D L++EM+ K P E T L +K
Sbjct: 347 GSYGCSPDTISYTTVLKGLCRAERWEDAK---ELLKEMVRKNCPPNEVTFNTFICILCQK 403
Query: 420 SL-GNAKERIDELLTHATE 437
L A I+++ H E
Sbjct: 404 GLIEQATMLIEQMSEHGCE 422
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 104/230 (45%), Gaps = 23/230 (10%)
Query: 184 LMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ L +R + A +V + ++ ++ L+ G+C+ + D A++ + M
Sbjct: 84 LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM---P 140
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
+PD +YT I C + L +M +GC+PSV+T T+++ A+ K+ +A+
Sbjct: 141 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM 200
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362
+V ++M++ C + + YN +I+ C +A + ++
Sbjct: 201 EVLDEMRAKGCTPN----------------IVTYNVIINGMCREGRVDDAREFLNRLSSY 244
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+PD ++ LK C KR +D V L EM+ K +P E T ML
Sbjct: 245 GFQPDTVSYTTVLKGLCAAKRWED---VEELFAEMMEKNCMPNEVTFDML 291
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 23/226 (10%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ + +++I+ CK + D A + + M +G SPD +SYT ++ CR + + L
Sbjct: 319 NTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELL 378
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
KEM K C P+ +T + L + I +A + E+M C
Sbjct: 379 KEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGC----------------E 422
Query: 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
V + YN +++ CV+ +AL+L + CKP+ T+ L C+ +R+
Sbjct: 423 VNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAA-- 477
Query: 391 LNLMREMLSKGIVPQESTHKMLAEELEKKSLGN-AKERIDELLTHA 435
L+ EML K P T +L +K L + A E +++++ H
Sbjct: 478 -ELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 522
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 102/224 (45%), Gaps = 27/224 (12%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ L+ G C + D A + + EM Q +P+ V++ + +C++ + +++M
Sbjct: 460 YTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMM 519
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
E GC P++IT ++ + K EAL++ + S+ D YSS+I +LS+ R
Sbjct: 520 EHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVE 579
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+IYN ++ + C R A+ + + C P+ T+ +
Sbjct: 580 EAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLI 639
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
+ ++ +K+ +L+RE+ S+G++ +K L EE K
Sbjct: 640 EGLANEDFLKE---TRDLLRELCSRGVL-----NKNLLEEWRPK 675
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 96/224 (42%), Gaps = 25/224 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L++G+C + D A++ + P+ ++YT + C + L EM
Sbjct: 428 YNALVNGFCVQGRVD---SALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEML 484
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
+K C P+V+T +++ + + EA+++ E+M C + Y++L+
Sbjct: 485 QKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSE 544
Query: 325 -------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++S V + Y+++I A+K+ +++ +P + + L
Sbjct: 545 EALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKIL 604
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
C K+ DG ++ M+S G +P E T+ L E L +
Sbjct: 605 LALC-KRCNTDG--AIDFFAYMVSNGCMPNELTYITLIEGLANE 645
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 20/182 (10%)
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-----A 330
+G P V CT ++ L + + +A +V + D Y++L+ + A
Sbjct: 72 RGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDA 131
Query: 331 VRFLI-----------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC 379
R LI Y +I C R G AL L + C+P T+ L+ C
Sbjct: 132 ARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVC 191
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATEQ 438
M VL+ EM +KG P T+ ++ + ++ + +A+E ++ L ++ +
Sbjct: 192 KSTGFGQAMEVLD---EMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQP 248
Query: 439 RT 440
T
Sbjct: 249 DT 250
>gi|449455613|ref|XP_004145547.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g43820-like [Cucumis sativus]
Length = 572
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 98/421 (23%), Positives = 163/421 (38%), Gaps = 83/421 (19%)
Query: 71 KLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTP 130
KLN ++ I HAL+ TDV +++ K + EA+ F F WA Q
Sbjct: 124 KLNGKTAIE-HALAN---TDVILSQDVVSKVLNTGSLGSEAMVTF-FYWAIKQPSIPKDA 178
Query: 131 ETYNAMVEALGKSKKFG----LMWELVKEIDELSNGYVSLAAMSTV-----------MRR 175
+YN +++ALG+ F +++ + +E E + VS+ S V R
Sbjct: 179 SSYNIILKALGRRGFFDSMMDVLYNMTREGVEATLEMVSIVVDSLVKGHQVSKALQFFRN 238
Query: 176 L-------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS 228
L DT +++L+ + +R+ V A F K I + ++++I GW + +
Sbjct: 239 LKEIGLKCDTETLNILLQCMCRRSHVGAANSFFNLTKGNIPFNVMTYNIVIGGWSRYGRH 298
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
++ +K M GFSPD +++T IE R +M E GC P V +
Sbjct: 299 GEVEQMLKAMELDGFSPDCLTHTYLIECLGRANQIDDAVKIFDKMDENGCTPDVDAYNAM 358
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--FILSKAV--------------- 331
+ + L YE+M S+ C D + YS+LI F+ +K V
Sbjct: 359 ISNFICIGDFDQCLTYYERMLSNRCEPDMNTYSNLITGFLKAKKVADALEMFDEMVARII 418
Query: 332 ---------------------RFLIYNTMISSACVRSEE---------------GNALKL 355
LIY C S+ G L +
Sbjct: 419 PTTGAITSFIQLSCSYGPPHAAMLIYKKARKVGCRISKNAYKLLLMRLSLFGKFGMLLNI 478
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+++E PD ET+ ++ C ++++ +LV M E L +G P T L +
Sbjct: 479 WNEMQESGYDPDVETYEHAIDCLCKTGQLENAVLV---MEECLRQGFFPSRRTRSKLNNK 535
Query: 416 L 416
L
Sbjct: 536 L 536
>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 606
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 144/324 (44%), Gaps = 48/324 (14%)
Query: 136 MVEALGKSKKFGLMWELVKEIDELSNGYVS--LAAMSTVMRRLDTRAMSVLMDTLVKRN- 192
+V A + +F L +E K +GY L+AMS LM L+K+N
Sbjct: 159 LVLAYANNSRFELGFEAFKR-----SGYYGYKLSAMSC----------KPLMVALLKQNR 203
Query: 193 --SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V + YK ++ K I + F+V+I+ CKT K + A+ M++M +G+SP+ VSY
Sbjct: 204 SADVEYLYKEMIRRK--IQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSY 261
Query: 251 TCFIEHYCR---EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
I+ YC+ K D LKEM E P++ T I++ K + +LKV+++
Sbjct: 262 NTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKE 321
Query: 308 MKSDDCLTDTSFYSSLIF-----------------ILSKAVR--FLIYNTMISSACVRSE 348
M D + + Y+SLI ++S V+ + Y+++I+ C
Sbjct: 322 MLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGM 381
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
AL + ++ +P + + C ++ DG L EM +GIVP T
Sbjct: 382 MKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDG---FALKEEMEREGIVPDVGT 438
Query: 409 HKMLAEEL-EKKSLGNAKERIDEL 431
+ L L ++ AK+ D+L
Sbjct: 439 YNCLIAGLCRNGNIEAAKKLFDQL 462
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 97/215 (45%), Gaps = 27/215 (12%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
+++++++LI +CK K D +EM + G PD +Y C I CR +
Sbjct: 400 TTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLF 459
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
++ KG P ++T I+M + +A + ++M +
Sbjct: 460 DQLTNKGL-PDLVTFHILMEGYCSRGESRKAAMLLKEMSK----------------MGLK 502
Query: 331 VRFLIYNTMISSACVRSEEGN---ALKLRQKIE-EDSCKPDCETHARSLKMCCHKKRMKD 386
R L YN M+ C +EGN A +R ++E E + + ++ L+ K +++D
Sbjct: 503 PRHLTYNIMMKGYC---KEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLED 559
Query: 387 GMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
++LN EML KG+VP T++++ EE+ K
Sbjct: 560 ANMLLN---EMLEKGLVPNRITYEIVKEEMVDKGF 591
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 96/238 (40%), Gaps = 24/238 (10%)
Query: 184 LMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+D V+ S + +F + D + ++S I D+L+ + + + +A K +
Sbjct: 123 FLDGFVRNGSDHQVHSIFHAISMCDNVCVNSIIADMLVLAYANNSRFELGFEAFKRSGYY 182
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G+ +S + ++ V+Y KEM + +P+V T +V++AL K ++ +A
Sbjct: 183 GYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKA 242
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK---LRQK 358
V E MK + + + YNT+I C G K + ++
Sbjct: 243 RDVMEDMK----------------VYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKE 286
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ E+ P+ T + + L + +EML + ++P T+ L L
Sbjct: 287 MVENEVSPNLTTFNILIDGFWKDDNLPGS---LKVFKEMLDQDVIPNVITYNSLINGL 341
>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 126/289 (43%), Gaps = 41/289 (14%)
Query: 108 VVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLA 167
V EALK F + + GY TYN +++ L K + V E EL +G V
Sbjct: 164 VSEALKLF---GSVLKQGYEPEVPTYNILIDGLLKEDR-------VNEAFELFSGLVKHG 213
Query: 168 AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKT 225
D +V +D L K V A + + K C+ + +I+G CK
Sbjct: 214 LEP------DAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVP-DVVSHNAVINGLCKE 266
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
++ D A+ + M G SP+ +S+ I CR ++K T KEM ++G KP+V+T
Sbjct: 267 KRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTY 326
Query: 286 TIVMHALEKAKQ---IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--------- 333
I++ L KA+Q I EA+ +++ M + D YS+LI L KA +
Sbjct: 327 NILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGA 386
Query: 334 ----------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
YN++IS C + AL+L + E C PD T+
Sbjct: 387 MEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYG 435
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/366 (24%), Positives = 151/366 (41%), Gaps = 55/366 (15%)
Query: 110 EALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFG----LMWELVKE---------- 155
EALK F + G++ TYNA++ K+ K ++ +V E
Sbjct: 63 EALKIF---DGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYN 119
Query: 156 --IDEL-SNGYVSLAAMSTVMRRLDTRAM--SVLMDTLVKR-NSVAHAYKVFLK-FKDCI 208
++ L NG V A M V + + S L+ L + V+ A K+F K
Sbjct: 120 SLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGY 179
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
+++LI G K + + A + + +HG PD ++YT FI+ C+
Sbjct: 180 EPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALL 239
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF--- 325
LK+M EKGC P V++ V++ L K K++ EA + M++ C + +++LI
Sbjct: 240 MLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQC 299
Query: 326 --------------ILSKAVR--FLIYNTMISSACVRSEEGN---ALKLRQKIEEDSCKP 366
+L + V+ + YN ++ C +EG A+ L + E P
Sbjct: 300 RAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVP 359
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
D T++ + ++ D +L M +KG +P T+ L L E
Sbjct: 360 DVVTYSALIDGLGKAGKLDDARRLLGAME---AKGCIPNVYTYNSLISGL------CGLE 410
Query: 427 RIDELL 432
++DE L
Sbjct: 411 KVDEAL 416
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 104/233 (44%), Gaps = 26/233 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L+HG+CK + D A K + GF PD V+Y I +C+ + L+ M
Sbjct: 48 YNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMV 107
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEA-LKVYEKMKSDDCLTDTSFYSSL---IFILSKA 330
+ P V+T +++ L K ++ EA + + +K S + +T ++ S L + +S+A
Sbjct: 108 SENLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEA 167
Query: 331 VRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
++ YN +I A +L + + +PD T+ +
Sbjct: 168 LKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDG 227
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDE 430
C R++D +L+L ++M KG VP +H + L K ++R+DE
Sbjct: 228 LCKAGRVEDALLML---KDMDEKGCVPDVVSHNAVINGLCK------EKRVDE 271
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 215 FDVLIHGWCKTRKSDYAQKAM---KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
+++L+ G CK R+ ++A+ M + G PD V+Y+ I+ + L
Sbjct: 326 YNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLG 385
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
M+ KGC P+V T ++ L +++ EAL+++ M C+ DT Y ++I
Sbjct: 386 AMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTII 438
>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 632
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 146/347 (42%), Gaps = 48/347 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA + Y H TY A++ L +++G MW++++E+ V+ +S V+R L
Sbjct: 110 FRWAAKKRNYQHDTSTYMALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRML 169
Query: 177 DT-----RAMSVLMDTLVKR-NSVAHAYKVFL-------KFKDCISLSSQI--------- 214
+A+++ ++ A AY + +++ L +++
Sbjct: 170 GNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPD 229
Query: 215 ---FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
+ LI +CK + D A + + EM ++G P YT I + + + +
Sbjct: 230 TVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFE 289
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
EM+ C+P V T T ++ L KA +I EA Y +M+ +DC DT +++I L KA
Sbjct: 290 EMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAG 349
Query: 332 RF-------------------LIYNTMISSAC-VRSEEGNALKLRQKIEEDSCKPDCETH 371
R + YNT+I + +S ++++ P T+
Sbjct: 350 RLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTY 409
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
+ + C R++ M+ L+ EM KG P + + L + L K
Sbjct: 410 SILIDGFCKTNRIEKAMM---LLEEMDEKGFPPCPAAYCSLIDALGK 453
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 123/269 (45%), Gaps = 27/269 (10%)
Query: 68 ESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQ--TG 125
+ LKL E+ +S H + +V + I++ + S +V E F+W + +G
Sbjct: 353 DGLKLFEEMGVS-HCIP-----NVVTYNTIIKALFESKSRVSEV-----FSWFERMKGSG 401
Query: 126 YMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
+P TY+ +++ K+ + L++E+DE G+ A A L+
Sbjct: 402 ISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDE--KGFPPCPA-----------AYCSLI 448
Query: 186 DTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
D L K A ++F + K +C S S++++ V+I K + D A EM + G +
Sbjct: 449 DALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCT 508
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P+ +Y + R + T+++MQE GC P + + I+++ L K + A+++
Sbjct: 509 PNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEM 568
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
MK+ D Y++++ LS A F
Sbjct: 569 LTNMKNSTIKPDAVSYNTVLSALSHAGMF 597
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 113/245 (46%), Gaps = 31/245 (12%)
Query: 130 PETY--NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT 187
P+T N M+ LGK+ + +L +E+ +S+ ++ +T+++ L
Sbjct: 333 PDTVVMNNMINFLGKAGRLDDGLKLFEEMG-VSHCIPNVVTYNTIIKAL----------- 380
Query: 188 LVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
++ V+ + F + K IS S + +LI G+CKT + + A ++EM + GF P
Sbjct: 381 FESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPC 440
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
+Y I+ + K + +E++E S +++ L KA ++ +A+ +++
Sbjct: 441 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFD 500
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
+M C + Y++L+ L++A C+ E AL +K++E C P
Sbjct: 501 EMSKLGCTPNVYAYNALMSGLARA-------------CMLDE---ALTTMRKMQEHGCLP 544
Query: 367 DCETH 371
D ++
Sbjct: 545 DINSY 549
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 14/208 (6%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G+ P Y ++++ALGK+K++ L EL +E+ E + G S R +
Sbjct: 434 EKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE-NCGSSS------------ARVYA 480
Query: 183 VLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
V++ L K + A +F + K + + ++ L+ G + D A M++M +H
Sbjct: 481 VMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEH 540
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD SY + + + L M+ KP ++ V+ AL A EA
Sbjct: 541 GCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEA 600
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSK 329
++ ++M + D YSS++ + K
Sbjct: 601 AELMKEMNALGFEYDLITYSSILEAIGK 628
>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Vitis vinifera]
Length = 666
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 127/317 (40%), Gaps = 55/317 (17%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
+ A + LM L + S+ A VF ++ C + + + LI G+ K D A +
Sbjct: 350 NVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCP-NVRTYSALIDGYAKAGDLDGASEV 408
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
M HG P+ V+YTC ++ CR F + ++ MQ + C P+ +T + L
Sbjct: 409 WNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCG 468
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LI 335
+ ++ A+KV+++M + C +T+ Y+ L+ L K RF +
Sbjct: 469 SGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVT 528
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN--- 392
YNT+I C G AL+L K+ KPD T + C + ++ + +++
Sbjct: 529 YNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLS 588
Query: 393 -----------------------------LMREMLSKGIVPQESTHKMLAEEL-EKKSLG 422
+R MLS+GI P +T +L L
Sbjct: 589 AGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHS 648
Query: 423 NAKERIDELLTHATEQR 439
A + +D +L E R
Sbjct: 649 GAVQFLDAVLGSGFETR 665
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 123/319 (38%), Gaps = 72/319 (22%)
Query: 126 YMHTPETYNAMVEALGKSKKFGLMWELVKE----------------IDELSNGYVSLAAM 169
+ HTP TY M+E L ++ + L+++ I S A+
Sbjct: 72 FKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQAL 131
Query: 170 STVMRRLDTRAMSV------LMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGW 222
T R D R ++D L+ N ++ K D + + +++L+
Sbjct: 132 KTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKAL 191
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYT------------------------------C 252
CK + D A K + EM G PD VSYT
Sbjct: 192 CKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFTPSVPVYNA 251
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I C+E F + L EM KG P+VI+ T +++AL A + +L V KM +
Sbjct: 252 LINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARG 311
Query: 313 CLTDTSFYSSLI--FILS----KAVRF-------------LIYNTMISSACVRSEEGNAL 353
C + ++SLI F L +A+ F + YN ++ C + G+A+
Sbjct: 312 CSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAV 371
Query: 354 KLRQKIEEDSCKPDCETHA 372
+ ++E + C P+ T++
Sbjct: 372 SVFNQMEINGCCPNVRTYS 390
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 117/290 (40%), Gaps = 37/290 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS--VLMDTLV 189
YNA++ + K F ++L +DE+ N + +D +S +++ L
Sbjct: 248 VYNALINGVCKEYTFEEAFQL---LDEMMN------------KGIDPNVISYTTIINALS 292
Query: 190 KRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
+V + V K F S + F LI G+ S A M + G P+ V
Sbjct: 293 DAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVV 352
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+Y + C ++ +M+ GC P+V T + ++ KA + A +V+ M
Sbjct: 353 AYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWM 412
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
+ C + Y+ ++ +L + N+M + A L + ++ ++C P+
Sbjct: 413 ITHGCHPNVVAYTCMVDVLCR-------NSMFNQAYC---------LIENMQVENCPPNT 456
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
T +K C R+ + V + +M + G P +T+ L + L K
Sbjct: 457 VTFNTFIKGLCGSGRVDWAIKVFD---QMGNSGCFPNTTTYNELLDSLLK 503
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 20/174 (11%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+G TYN ++++L K ++FG + LVK++ E ++L +T++ M
Sbjct: 484 NSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDM-EHRGIELNLVTYNTIIYGYCCAGML 542
Query: 183 V----LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
L+ +V R + A V +++I +CK K + A + M +
Sbjct: 543 GEALELLGKMVVRGTKPDAITV---------------NIVIDAYCKQGKVNIAIQLMDRL 587
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ PD ++YT I C + L+ M +G P+V T +++ L
Sbjct: 588 SAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 21/179 (11%)
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
++Y IE E++ V Y L++M+ +G S V+ + +A +ALK + +
Sbjct: 77 LTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYR 136
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
M+ Y+ ++ L RF + N + S+ +++D +P+
Sbjct: 137 MQDFRVKPTVKIYNHILDALLDENRFQMINPIYSN----------------MKKDGMEPN 180
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
T+ LK C R+ DG L+ EM SKG P E ++ L L K LG KE
Sbjct: 181 VFTYNILLKALCKNNRV-DG--AHKLLVEMSSKGCDPDEVSYTTLISSLCK--LGKVKE 234
>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
Length = 754
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 133/289 (46%), Gaps = 37/289 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++++L K ++K++ ELS S+ +T L+D K
Sbjct: 437 TYNMLIDSLCSKGKLDEALNMLKQM-ELSGCARSVITYNT------------LIDGFCKA 483
Query: 192 NSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
N + A ++F + + +S +S ++ LI G CK+R+ + A + M +M G PD +Y
Sbjct: 484 NKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTY 543
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ H+CR D +K ++ M GC+P ++T ++ L KA ++ A K+ ++
Sbjct: 544 NSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQ- 602
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL-RQKIEEDSCKPDCE 369
+ A+ YN +I + + A+ L R+ +E++ PD
Sbjct: 603 ---------------MKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAV 647
Query: 370 THARSLKMCCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLAEEL 416
++ + C+ G + ++ + E+L KG VP+ S+ MLAE L
Sbjct: 648 SYRIVFRGLCN----GGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGL 692
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 135/318 (42%), Gaps = 38/318 (11%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
Q GY TYN+++ L K G + E V+ +D+ M T +T +
Sbjct: 323 QEGYDPDVYTYNSVISGLCK---LGEVKEAVEFLDQ----------MITRDCSPNTVTYN 369
Query: 183 VLMDTLVKRNSVAHAYKV--FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L+ TL K N V A ++ L K + F+ LI G C TR A + +EM
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILP-DVCTFNSLIQGLCLTRNHRVAMELFEEMRS 428
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD +Y I+ C + + LK+M+ GC SVIT ++ KA +I E
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIRE 488
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMIS 341
A +++++M+ ++ Y++LI L K+ R YN++++
Sbjct: 489 AEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLT 548
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C + A + Q + + C+PD T+ + C R++ + L+R + KG
Sbjct: 549 HFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVE---VASKLLRSIQMKG 605
Query: 402 IVPQESTHKMLAEELEKK 419
I + + + L +K
Sbjct: 606 IALTPHAYNPVIQGLFRK 623
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 99/227 (43%), Gaps = 20/227 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ L++G CK +A + M M Q G+ PD +Y I C+ + ++ L +M
Sbjct: 298 FNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMI 357
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ C P+ +T ++ L K Q+ EA ++ + S L D
Sbjct: 358 TRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVC---------------- 401
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+N++I C+ A++L +++ C+PD T+ + C K ++ + LN++
Sbjct: 402 TFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEA---LNML 458
Query: 395 REMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATEQRT 440
++M G T+ L + K + + A+E DE+ H + +
Sbjct: 459 KQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNS 505
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/348 (21%), Positives = 141/348 (40%), Gaps = 55/348 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYV 164
F A + + P Y ++ LG+S F M ++++++ L Y
Sbjct: 70 FNLASKKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLILIESYA 129
Query: 165 SLAAMSTVMR-----------RLDTRAMSVLMDTLVKRNS-----VAHAYKVFLKFKDCI 208
++ + DT + +++ LV N+ +AHA K +
Sbjct: 130 QFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDV 189
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
S F+VLI C+ + A +++M +G PD ++T ++ Y E D
Sbjct: 190 S----TFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALR 245
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC-LTDTSFYSSLIFIL 327
++M E GC S ++ +++H K ++ +AL ++M + D D +++L+ L
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGL 305
Query: 328 SKA--VRFLI-----------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
KA V+ I YN++IS C E A++ ++ C P+
Sbjct: 306 CKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNT 365
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
T+ + C + ++++ L R + SKGI+P T L + L
Sbjct: 366 VTYNTLISTLCKENQVEEAT---ELARVLTSKGILPDVCTFNSLIQGL 410
>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 495
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 89/429 (20%), Positives = 178/429 (41%), Gaps = 89/429 (20%)
Query: 61 PSLASWVESLKLNEQSRISSHALSEDH-ETDVDKVSEILRKRYPSPDKVVEALKCFCFTW 119
PS A+ + L L R S AL++ + D V++++++ + K ++ K
Sbjct: 39 PSDAT-IAKLVLESDPRTVSEALTKPTIQWTPDLVNKVMKRLWNHGPKALQFFKHL---- 93
Query: 120 AKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDEL-----------------SNG 162
+ Y H+P +++ V+ + + F W LV + L SNG
Sbjct: 94 DRHHPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASNG 153
Query: 163 --------YVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
++S+A R D + + L+D L K V A+ + +
Sbjct: 154 KPHRAVRTFLSMAEHGI---RQDLHSFNTLLDILCKSKRVETAHSLLKTLTSRFRPDTVT 210
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++L +G+C +++ A + +KEM Q G P V+Y ++ Y R ++ EM+
Sbjct: 211 YNILANGYCLIKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMK 270
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
++ C+ V+T T V+H A + +A +V+ +M + + + + Y++LI +L K
Sbjct: 271 KRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVE 330
Query: 330 --AVRF-------------LIYNTMISS-----------------------ACVRS---- 347
V F + YN +I ACV++
Sbjct: 331 NAVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVV 390
Query: 348 --------EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
E AL++ K+ + SC P+ +T+ + +K+ +D ++ L+ +M+
Sbjct: 391 IRYFCDAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVD 450
Query: 400 KGIVPQEST 408
+G +P++ T
Sbjct: 451 RGFLPRKFT 459
>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Vitis vinifera]
Length = 728
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 129/310 (41%), Gaps = 36/310 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T N +V+AL +S+ +GL + + + M+ V ++S L++
Sbjct: 76 TCNFLVDALARSRNYGLAFSVYRR-------------MTHVDVLPSFGSLSALIECFADA 122
Query: 192 NSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ V L K +++ I ++++ G C+ A ++EM + SPD VSY
Sbjct: 123 QKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSY 182
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I C+ K ++ L EM+ GC P+ +TCT +M L K ++ EA+++ E MK
Sbjct: 183 NTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKK 242
Query: 311 DDCLTDTSFYSSLIF-----------------ILSKAV--RFLIYNTMISSACVRSEEGN 351
D Y +LI +L K + + Y+ ++ C +
Sbjct: 243 KGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKE 302
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A + + E PD T+ + C R M +LNLM E KG P T+ +
Sbjct: 303 ANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVE---KGEEPSNVTYNV 359
Query: 412 LAEELEKKSL 421
L L K+ L
Sbjct: 360 LLSGLCKEGL 369
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 106/256 (41%), Gaps = 25/256 (9%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS + + L+HG C+ + A + M +HG PD V+YT I+ C++
Sbjct: 280 ISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAM 339
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
L M EKG +PS +T +++ L K + +A K+ M D Y++L+ L
Sbjct: 340 DLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGL 399
Query: 328 ------SKAVRF---------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
+A++ +N +I C A+K+ +K+ +
Sbjct: 400 CDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCG 459
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGN-AK 425
+ T+ L C ++K+ M L +++L G VP T+ +L + K + N AK
Sbjct: 460 NLVTYNMLLGGCLKAGKIKEAM---ELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAK 516
Query: 426 ERIDELLTHATEQRTF 441
E+ TH F
Sbjct: 517 GLFCEMRTHGLNPALF 532
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 104/244 (42%), Gaps = 27/244 (11%)
Query: 182 SVLMDTLVKRNSVAHAYKV---FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
++L+ L K + A K+ +K C +L + +++L+ G K K A + K++
Sbjct: 430 NMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVT--YNMLLGGCLKAGKIKEAMELWKQV 487
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
GF P+ +Y+ I+ +C+ + EM+ G P++ +M +L K +
Sbjct: 488 LDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSL 547
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTM 339
+A ++++M + +C D ++++I KA F L ++T+
Sbjct: 548 EQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTL 607
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I+ E A +++ PD + LK K D ++NL+ +M +
Sbjct: 608 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSK---GDTTEIINLLHQMAA 664
Query: 400 KGIV 403
KG V
Sbjct: 665 KGTV 668
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 30/183 (16%)
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA--------- 330
PS TC ++ AL +++ A VY +M D L S+LI + A
Sbjct: 72 PSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGV 131
Query: 331 ----------VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
V I N ++ C A+ L +++ S PD ++ + C
Sbjct: 132 VGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCK 191
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL--LTHATEQ 438
K++K+ + L+ EM + G P T L + L K R+DE L A ++
Sbjct: 192 AKKLKE---AVGLLLEMEAAGCFPNSVTCTTLMDGLCKDG------RMDEAMELLEAMKK 242
Query: 439 RTF 441
+ F
Sbjct: 243 KGF 245
>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Brachypodium distachyon]
Length = 597
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 118/270 (43%), Gaps = 38/270 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNG-----YVSLAAMSTVMRRLDTRAMSVLMD 186
TY+ +V A + G+ EL E+ + N Y ++ + T RLD
Sbjct: 320 TYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLD--------- 370
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
S+A + K K L ++ +++LI G+C+ ++ + A + + EM + G PD
Sbjct: 371 ---DAWSMATSMK-----KAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPD 422
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
+Y + C+ DF VD L +M + GC+PSV+T ++H K QI EAL+++
Sbjct: 423 VYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFR 482
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
M +T +IYNT+I C + A++L ++ E
Sbjct: 483 SMDESGIQPNT----------------VIYNTLIDFLCKSRDTSLAIELFDEMREKHVPA 526
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
+ T LK K + +++LMRE
Sbjct: 527 NVTTFNALLKGLRDKNMPEKAFELMDLMRE 556
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 77/195 (39%), Gaps = 14/195 (7%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G+ + YN ++ + K+ +EL+ E+ E + D +
Sbjct: 381 KAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAG-------------LQPDVYTYN 427
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+ L K ++ K D S + F LIHG+CK + D A + + M +
Sbjct: 428 TLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDES 487
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G P+ V Y I+ C+ +D EM+EK +V T ++ L +A
Sbjct: 488 GIQPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVTTFNALLKGLRDKNMPEKA 547
Query: 302 LKVYEKMKSDDCLTD 316
++ + M+ C D
Sbjct: 548 FELMDLMREGRCTPD 562
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/331 (19%), Positives = 132/331 (39%), Gaps = 47/331 (14%)
Query: 130 PET--YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT 187
P+T +N +++AL ++ M +L A+M R + +L+
Sbjct: 135 PDTSAFNTLLDALAQAGDLPGMTQL-------------FASMRDASVRPNVVTYGILVKG 181
Query: 188 LVKRNSVAHAYKVFLKFKDC---ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ--HG 242
L K V A V + + + ++ G CKT + A K ++E + HG
Sbjct: 182 LCKAGRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHG 241
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
+P+ V+Y C +CR + + +M+++ P+ +T ++ L ++ AL
Sbjct: 242 CAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWVGRVGAAL 301
Query: 303 KVYEKMKS--DDCLTDTSFYSSLI--FILSKAVRF-----------------LIYNTMIS 341
+ + + ++ + + YS+L+ F+ + V ++Y TMIS
Sbjct: 302 EFFREKRTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMIS 361
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
+A + +++ + D + + + C +KR+ + L+ EM G
Sbjct: 362 GLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNE---AYELLGEMKEAG 418
Query: 402 IVPQESTHKMLAEELEKKSLGNAKERIDELL 432
+ P T+ L L K A +DELL
Sbjct: 419 LQPDVYTYNTLLSGLCKAGDFLA---VDELL 446
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 60/308 (19%), Positives = 122/308 (39%), Gaps = 44/308 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY +V+ L K+ + G + + +D +S G S VM ++ ++D L K
Sbjct: 174 TYGILVKGLCKAGRVG---DALSVLDGMS-GPESDVCPDVVM-------LNNIVDGLCKT 222
Query: 192 NSVAHAYKVF---LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
+ A K ++ + ++ ++ L H +C+ A + + +M + +P+ V
Sbjct: 223 GRLQQAVKFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAV 282
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKG-----CKPSVITCTIVMHALEKAKQIYEALK 303
+ + C +V L+ +EK + + +T + ++ A + A++
Sbjct: 283 TLNTIVGGLCW---VGRVGAALEFFREKRTVWPEARGNAVTYSTLVGAFLHTNNVGVAME 339
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSAC 344
++ +M + D Y ++I L++A R YN +I C
Sbjct: 340 LFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFC 399
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
R A +L +++E +PD T+ L C + D + V L+ +M+ G P
Sbjct: 400 RRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLC---KAGDFLAVDELLGKMIDGGCRP 456
Query: 405 QESTHKML 412
T L
Sbjct: 457 SVVTFGTL 464
>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
Length = 609
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 121/261 (46%), Gaps = 28/261 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKA 234
+ R +V+++ L K + AY+V + +D S++ + + +I+G+CK + D A +
Sbjct: 8 NERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEI 67
Query: 235 MKEMF-QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
++EM + G +PD V+YT ++ CR+ + ++EM+ KG +P T + ++
Sbjct: 68 LREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWC 127
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------- 333
A+++ EALK+Y+++ + C D S+LI L + R
Sbjct: 128 NARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKP 187
Query: 334 --LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+ Y +I C A+K+ +E C P+ T++ L C + L
Sbjct: 188 DVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQA---L 244
Query: 392 NLMREMLSKGIVPQESTHKML 412
+L R M SKG VP T+ L
Sbjct: 245 DLFRRMTSKGCVPNVVTYTTL 265
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 89/388 (22%), Positives = 155/388 (39%), Gaps = 89/388 (22%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR------RLDTRAMSVLM 185
TYN +V L K++ +E++KE+ + + L STV+ +D RA +L
Sbjct: 11 TYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMD-RACEILR 69
Query: 186 DTLVKRNSVAHAYKVFLKFKDCISLSSQI---------------------FDVLIHGWCK 224
+ +V R+ +A + D + ++ F LI GWC
Sbjct: 70 E-MVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCN 128
Query: 225 TRKSDYAQKAMK-------------------------------EMFQH-------GFSPD 246
RK D A K K E+FQ + PD
Sbjct: 129 ARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPD 188
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+YT I+ +C+ + K L M+ + C P+V+T + ++H L KA + +AL ++
Sbjct: 189 VVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFR 248
Query: 307 KMKSDDCLTDTSFYSSLIFILSK-----AVRFLI--------------YNTMISSACVRS 347
+M S C+ + Y++LI L A R L+ YN ++ C
Sbjct: 249 RMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLG 308
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
A +L +++ SC PD T+ ++ C+ R+++ +L M+ + GI P
Sbjct: 309 RIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKT--AAGIDPDVV 366
Query: 408 THKMLAEELEK-KSLGNAKERIDELLTH 434
T+ ++ + K A E I E++
Sbjct: 367 TYSIVVAGYSRAKRFVEAAEFIQEMIAR 394
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/283 (20%), Positives = 121/283 (42%), Gaps = 22/283 (7%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
DT + + L+D + + A ++F + L +I + L+ G+C + + A+ +
Sbjct: 293 DTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLL 352
Query: 236 KEM-FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ M G PD V+Y+ + Y R K F + ++EM + P+ +T + ++ L K
Sbjct: 353 ENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCK 412
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSL---------IFILSKAVRFLI------YNTM 339
A ++ A++V + + D +T T L + +L + V + +N++
Sbjct: 413 AGRVNHAMEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSV 472
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I + C + A KL + +P T+ L+ RM+ + +MR
Sbjct: 473 IGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAK 532
Query: 400 K-----GIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATE 437
K +VP+++ ++ + + + A ++EL + E
Sbjct: 533 KSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECE 575
>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 91/423 (21%), Positives = 162/423 (38%), Gaps = 88/423 (20%)
Query: 60 IPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVV---------- 109
PSL + + K S S++ H D +S+++ K++ S K +
Sbjct: 18 FPSLDPKLNNTKTPFSSPNSTYTTPNSHTFDTPTISQLIAKQHWSKLKTIVKETNPSSLL 77
Query: 110 ----------EALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE---- 155
+ + C+ F W + + G +H E + ++ L +K + + L+
Sbjct: 78 QHLFNSEAQPDLILCY-FKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKN 136
Query: 156 -------------------------IDELSNGYVSLAAMSTVMR----------RLDTRA 180
+D L YV M + RL +
Sbjct: 137 AHYSNSTIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALS 196
Query: 181 MSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ ++ +LVK + V+ + + I ++ FDV+I+G CK K A +++M
Sbjct: 197 CNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMK 256
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
GFSP ++Y I+ YC+ K D LKEM K P+ IT I++ + + +
Sbjct: 257 AWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVT 316
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
A KV+E+M+ + + YN++I+ C + AL L+ K+
Sbjct: 317 AAKKVFEEMQRQGLQPNV----------------VTYNSLINGLCSNGKLDEALGLQDKM 360
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS----KGIVPQESTHKMLAEE 415
KP+ T+ + C KK +K+ REML +G+ P T L +
Sbjct: 361 SGMGLKPNVVTYNALINGFCKKKMLKEA-------REMLDDIGKRGLAPNVITFNTLIDA 413
Query: 416 LEK 418
K
Sbjct: 414 YGK 416
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/378 (21%), Positives = 155/378 (41%), Gaps = 84/378 (22%)
Query: 101 RYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELS 160
++ VVE +K W G+ + TYN +++ K+ K L+KE+
Sbjct: 244 KFQKAGDVVEDMK----AW-----GFSPSVITYNTIIDGYCKAGKMFKADALLKEM---- 290
Query: 161 NGYVSLAAMSTVMRRLDTRAMS--VLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDV 217
V +R+ ++ +L+D + +V A KVF + + + + ++
Sbjct: 291 -----------VAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNS 339
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LI+G C K D A +M G P+ V+Y I +C++K ++ L ++ ++G
Sbjct: 340 LINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRG 399
Query: 278 CKPSVITCTIVMHALEKAKQ-----------------------------------IYEAL 302
P+VIT ++ A KA + + EA
Sbjct: 400 LAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEAR 459
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFIL------SKAVRF-------------LIYNTMISSA 343
K+ ++M+ + D Y+ L+ L KAVR L YN +I
Sbjct: 460 KLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGY 519
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
AL +R +E+ + + T+ +K C+K ++++ +LN EML KG++
Sbjct: 520 FREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLN---EMLEKGLI 576
Query: 404 PQESTHKMLAEELEKKSL 421
P +T+ +L +E+ +K
Sbjct: 577 PNRTTYDILRDEMMEKGF 594
>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
Length = 571
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 147/347 (42%), Gaps = 48/347 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA + Y H TY A++ L +++G MW++++E+ V+ +S V+R L
Sbjct: 110 FRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRML 169
Query: 177 D-----TRAMSVLMDTLVKR-NSVAHAYKVFL-------KFKDCISLSSQI--------- 214
++A+++ ++ A AY + +++ L +++
Sbjct: 170 GNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPD 229
Query: 215 ---FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
+ LI +CK + D A + + EM +G P YT + + + D +
Sbjct: 230 TMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFE 289
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
EM+ + C+P V T T ++ L KA +I EA + +M+ + C DT +++I L KA
Sbjct: 290 EMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAG 349
Query: 332 RF-------------------LIYNTMISSAC-VRSEEGNALKLRQKIEEDSCKPDCETH 371
R + YNT+I + +S ++++E P T+
Sbjct: 350 RLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTY 409
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
+ + C RM+ M+ L+ EM KG P + + L + L K
Sbjct: 410 SILIDGFCKTNRMEKAMM---LLEEMDEKGFPPCPAAYCSLIDALGK 453
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 109/246 (44%), Gaps = 33/246 (13%)
Query: 130 PETY--NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT 187
P+T N M+ LGK+ + +L +E+ L S+ +T+++ L
Sbjct: 333 PDTIVMNNMINFLGKAGRLDDAMKLFQEMGTL-RCIPSVVTYNTIIKAL----------- 380
Query: 188 LVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
++ + F + K+ IS SS + +LI G+CKT + + A ++EM + GF P
Sbjct: 381 FESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPC 440
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALKVY 305
+Y I+ + K + +E++E G S + ++ H L KA ++ +A+ ++
Sbjct: 441 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKH-LGKAGRLDDAINMF 499
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
++M C D Y++L+ L++ AL ++++E C
Sbjct: 500 DEMNKLGCAPDVYAYNALMSGLARTGML----------------DEALSTMRRMQEHGCI 543
Query: 366 PDCETH 371
PD ++
Sbjct: 544 PDINSY 549
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 14/177 (7%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
++G + TY+ +++ K+ + L++E+DE G+ A A
Sbjct: 399 ESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDE--KGFPPCPA-----------AYC 445
Query: 183 VLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+D L K A ++F + K +C S SS+++ V+I K + D A EM +
Sbjct: 446 SLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKL 505
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
G +PD +Y + R + T++ MQE GC P + + I+++ L+K + +
Sbjct: 506 GCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQKQEDL 562
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 91/422 (21%), Positives = 162/422 (38%), Gaps = 88/422 (20%)
Query: 61 PSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVV----------- 109
PSL + + K S S++ H D +S+++ K++ S K +
Sbjct: 19 PSLDPKLNNTKTPFSSPNSTYTTPNSHTFDTPTISQLIAKQHWSKLKTIVKETNPSSLLQ 78
Query: 110 ---------EALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE----- 155
+ + C+ F W + + G +H E + ++ L +K + + L+
Sbjct: 79 HLFNSEAQPDLILCY-FKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNA 137
Query: 156 ------------------------IDELSNGYVSLAAMSTVMR----------RLDTRAM 181
+D L YV M + RL +
Sbjct: 138 HYSNSTIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSC 197
Query: 182 SVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ ++ +LVK + V+ + + I ++ FDV+I+G CK K A +++M
Sbjct: 198 NPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKA 257
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
GFSP ++Y I+ YC+ K D LKEM K P+ IT I++ + + +
Sbjct: 258 WGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTA 317
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A KV+E+M+ + + YN++I+ C + AL L+ K+
Sbjct: 318 AKKVFEEMQRQGLQPNV----------------VTYNSLINGLCSNGKLDEALGLQDKMS 361
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS----KGIVPQESTHKMLAEEL 416
KP+ T+ + C KK +K+ REML +G+ P T L +
Sbjct: 362 GMGLKPNVVTYNALINGFCKKKMLKEA-------REMLDDIGKRGLAPNVITFNTLIDAY 414
Query: 417 EK 418
K
Sbjct: 415 GK 416
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 146/322 (45%), Gaps = 43/322 (13%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS-- 182
G+ + TYN +++ K+ K L+KE+ V +R+ ++
Sbjct: 259 GFSPSVITYNTIIDGYCKAGKMFKADALLKEM---------------VAKRIHPNEITFN 303
Query: 183 VLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+L+D + +V A KVF + + + + ++ LI+G C K D A +M
Sbjct: 304 ILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGM 363
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G P+ V+Y I +C++K ++ L ++ ++G P+VIT ++ A KA ++ +A
Sbjct: 364 GLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDA 423
Query: 302 LKVYEKMKSDDCLTDTSFYSSLI--FILSKAVR-----------------FLIYNTMISS 342
+ M + S Y+ LI F V+ + YN ++ +
Sbjct: 424 FLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDA 483
Query: 343 ACVRSEEGNALKLRQK---IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
C + E A++L + +E+ + + T+ +K C+K ++++ +LN EML
Sbjct: 484 LCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLN---EMLE 540
Query: 400 KGIVPQESTHKMLAEELEKKSL 421
KG++P +T+ +L +E+ +K
Sbjct: 541 KGLIPNRTTYDILRDEMMEKGF 562
>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
Length = 975
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/344 (21%), Positives = 146/344 (42%), Gaps = 71/344 (20%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY ++ + KS + L EL+++++E + +LD S+++D L K
Sbjct: 328 TYGPVLNVMCKSGQTALAMELLRKMEERN-------------IKLDAVKYSIIIDGLCKH 374
Query: 192 NSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAM--------------- 235
S+ +A+ +F + + I+ + +++LI G+C + D K +
Sbjct: 375 GSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTF 434
Query: 236 --------------------KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
KEM G +PD ++YT I+ +C+E K + + M
Sbjct: 435 SVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVS 494
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF---------- 325
KGC P++ T I+++ KA +I + L+++ KM + DT Y++LI
Sbjct: 495 KGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNV 554
Query: 326 -------ILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
++S+ V + Y ++ C E AL++ +KIE+ + D + +
Sbjct: 555 AKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIH 614
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C+ ++ D +L + KG+ P T+ ++ L KK
Sbjct: 615 GMCNASKVDDAW---DLFCSLPLKGVKPGVKTYNIMIGGLCKKG 655
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 110/263 (41%), Gaps = 29/263 (11%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKV--FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
DT + L+D K N + A ++ + K C + + F++LI+G+CK + D +
Sbjct: 465 DTITYTSLIDGFCKENHLDKANQMVDLMVSKGC-DPNIRTFNILINGYCKANRIDDGLEL 523
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
++M G D V+Y I+ +C +EM + P+++T I++ L
Sbjct: 524 FRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCD 583
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LI 335
+ +AL+++EK++ D Y+ +I + A +
Sbjct: 584 NGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKT 643
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV--LNL 393
YN MI C + A L +K+EED PD T+ + + + DG + L
Sbjct: 644 YNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILI-----RAHLGDGDATKSVKL 698
Query: 394 MREMLSKGIVPQESTHKMLAEEL 416
+ E+ G ST KM+ + L
Sbjct: 699 IEELKRCGFSVDASTIKMVIDML 721
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
++I+ +C+ RK A AM ++ + G+ P+ ++++ I C E + + M E
Sbjct: 226 IMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM 285
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI- 335
G KP +IT +++ L + + EA+ + +KM C + Y ++ ++ K+ + +
Sbjct: 286 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 345
Query: 336 ------------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
Y+ +I C NA L ++E + T+ +
Sbjct: 346 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 405
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C+ R DG L+R+M+ + I P T +L + K+
Sbjct: 406 FCNAGRWDDGA---KLLRDMIKRKINPNVVTFSVLIDSFVKEG 445
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/332 (19%), Positives = 138/332 (41%), Gaps = 39/332 (11%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
++ + A+ K+K++ L+ L K+++ + + L T +S++++ +
Sbjct: 189 FSRLFSAIAKTKQYDLVLALCKQME-----------LKGIAHNLYT--LSIMINCFCRCR 235
Query: 193 SVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
+ A+ K K ++ F LI+G C + A + + M + G PD ++
Sbjct: 236 KLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITIN 295
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ C + + +M E GC+P+ +T V++ + K+ Q A+++ KM+
Sbjct: 296 TLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEER 355
Query: 312 DCLTDTSFYSSLIFILSK-------------------AVRFLIYNTMISSACVRSEEGNA 352
+ D YS +I L K + YN +I C +
Sbjct: 356 NIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDG 415
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
KL + + + P+ T + + + ++++ L +EM+ +GI P T+ L
Sbjct: 416 AKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE---ELHKEMIHRGIAPDTITYTSL 472
Query: 413 AEELEKKS-LGNAKERIDELLTHATEQ--RTF 441
+ K++ L A + +D +++ + RTF
Sbjct: 473 IDGFCKENHLDKANQMVDLMVSKGCDPNIRTF 504
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 97/236 (41%), Gaps = 21/236 (8%)
Query: 96 EILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE 155
IL Y +++ + L+ F + G + TYN +++ + K + EL +E
Sbjct: 505 NILINGYCKANRIDDGLELF---RKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQE 561
Query: 156 IDELSNGYVSLAAMSTVMRRLDTRAMS--VLMDTLVKRNSVAHAYKVFLKF-KDCISLSS 212
+ V R++ ++ +L+D L A ++F K K + L
Sbjct: 562 M---------------VSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDI 606
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
I++++IHG C K D A + G P +Y I C++ + + ++
Sbjct: 607 GIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRK 666
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS 328
M+E G P T I++ A +++K+ E++K D S +I +LS
Sbjct: 667 MEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLS 722
>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
Length = 747
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 152/352 (43%), Gaps = 47/352 (13%)
Query: 125 GYMHTPETYNAMVEALGKSKK-FGLMWELVKEI------------DELSNGYVSLAAMST 171
G+M +YNA+++A +SK+ + KE+ + L G+ +
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDV 223
Query: 172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIH 220
+R D + +V N++ Y K D L + ++V+I+
Sbjct: 224 ALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVIN 283
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G C+ + + EM + G+S D V+Y I+ YC+E +F + EM G P
Sbjct: 284 GLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSP 343
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILSKAVRFL 334
SVIT T ++H++ KA + A + ++M+ + Y++L+ +++A R L
Sbjct: 344 SVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403
Query: 335 -------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
YN +I+ C+ + +A+ + + ++E PD +++ L C
Sbjct: 404 KEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFC-- 461
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELL 432
R D L + R+M++KGI P T+ L + E++ A + DE+L
Sbjct: 462 -RSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEML 512
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 134/299 (44%), Gaps = 20/299 (6%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVS--LAAMSTVMRRLDTRAM 181
G+ + TYNA++ + K M + + ++++ ++ + + STV+ R+
Sbjct: 409 NGFSPSVVTYNALINGHCIAGK---MVDAIAVLEDMKEKGLTPDVVSYSTVLSGF-CRSY 464
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
V VKR VA K D I+ SS LI G+C+ R++ A EM +
Sbjct: 465 DVDEALRVKRKMVAKGIK-----PDTITYSS-----LIQGFCEQRRTKEACDLFDEMLRV 514
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD +YT I YC E D +K EM EKG P V+T +++++ L K + EA
Sbjct: 515 GLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREA 574
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
++ K+ ++ + Y +LI S + F ++I C++ A ++ + + E
Sbjct: 575 KRLLLKLFYEESVPSDVTYHTLIENCSN-IEFKSVVSLIKGFCMKGMMTEADQVFESMLE 633
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ KPD + + C R D +L +EM+ G + T L + L K+
Sbjct: 634 KNHKPDGTAYNVMIHGHC---RGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEG 689
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 112/290 (38%), Gaps = 35/290 (12%)
Query: 29 LCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPS--LASWVESLKLNEQSRISSHALSED 86
L N HCI ++ + L+ + D V S L+ + S ++E R+ +++
Sbjct: 421 LINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKG 480
Query: 87 HETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKF 146
+ D S +++ + + EA F + G TY A++ A +
Sbjct: 481 IKPDTITYSSLIQG-FCEQRRTKEACDLF---DEMLRVGLPPDEFTYTALINA------Y 530
Query: 147 GLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-- 204
+ +L K I +L N V + D SVL++ L K+ A ++ LK
Sbjct: 531 CMEGDLQKAI-QLHNEMVEKGVLP------DVVTYSVLINGLNKQARTREAKRLLLKLFY 583
Query: 205 --------------KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
++C ++ + LI G+C A + + M + PDG +Y
Sbjct: 584 EESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAY 643
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
I +CR D RK KEM + G +T ++ L K ++ E
Sbjct: 644 NVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNE 693
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 85/207 (41%), Gaps = 36/207 (17%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV-------- 266
+ VLI+G K ++ A++ + ++F P V+Y IE+ C +F+ V
Sbjct: 558 YSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIEN-CSNIEFKSVVSLIKGFC 616
Query: 267 --------DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318
D + M EK KP +++H + I +A +Y++M L T
Sbjct: 617 MKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTV 676
Query: 319 FYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+L+ L K + N++I+ N L+ SC+ A+ L
Sbjct: 677 TVIALVKTLHKEGKVNELNSVIA---------NVLR--------SCELSEAEQAKVLVEI 719
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQ 405
H++ D +VL+++ EM G +P
Sbjct: 720 NHREGNMD--VVLDVLAEMAKDGFLPN 744
>gi|297719649|ref|NP_001172186.1| Os01g0151900 [Oryza sativa Japonica Group]
gi|9663979|dbj|BAB03620.1| hypothetical protein [Oryza sativa Japonica Group]
gi|13872936|dbj|BAB44041.1| hypothetical protein [Oryza sativa Japonica Group]
gi|215768885|dbj|BAH01114.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255672883|dbj|BAH90916.1| Os01g0151900 [Oryza sativa Japonica Group]
Length = 534
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 91/385 (23%), Positives = 154/385 (40%), Gaps = 54/385 (14%)
Query: 88 ETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFG 147
E D D V ++L+K+ S KV + F WA Y H Y M++ LG+ KK
Sbjct: 109 EMDEDVVLKVLQKQR-SNWKVALSF----FKWAAGLPQYNHGSRAYTEMLDILGRMKKVR 163
Query: 148 LMWELVKEIDELSNGYVSLAAMSTVMRR------------------------LDTRAMSV 183
LM +L EI S V M V+ LD +
Sbjct: 164 LMRQLFDEIPVESRQSVVTNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQI 223
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ +L + V A +FL+ KD + ++++++GWC A++ E+
Sbjct: 224 LLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEIIASKL 283
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD +Y FI + M EKG P V C ++ L K+I EAL+
Sbjct: 284 KPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALE 343
Query: 304 VYEKMKSDDCLTDTSFYSSLI--------------FILSKAVRFLIYNTMISSACVRSEE 349
++ +M C D + Y++LI + V+ + N M S +++ E
Sbjct: 344 IFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYILKTTE 403
Query: 350 --GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
+ + L Q++E+ C+ D +T+ L + K LV + EM G P +
Sbjct: 404 KPKDVISLMQRMEKSGCRLDSDTYNLILNLYVSWDYEKGVQLVWD---EMERNGSGPDQR 460
Query: 408 THKMLAEELEKKSLGNAKERIDELL 432
+ ++ L ++ +++DE L
Sbjct: 461 SFTIMVHGL------HSHDKLDEAL 479
>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12775, mitochondrial; Flags: Precursor
gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
multiple PPR PF|01535 repeats. EST gb|AI999079 comes
from this gene [Arabidopsis thaliana]
gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 644
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 131/292 (44%), Gaps = 43/292 (14%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+TG+ TY ++ + KS + L EL+++++E + +LD
Sbjct: 220 VETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERN-------------IKLDAVKY 266
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK------DCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
S+++D L K S+ +A+ +F + + D I+ ++ LI G+C + D K +
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIT-----YNTLIGGFCNAGRWDDGAKLL 321
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++M + SP+ V+++ I+ + +E R+ D LKEM ++G P+ IT ++ K
Sbjct: 322 RDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKE 381
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIY 336
++ EA+++ + M S C D ++ LI KA R + Y
Sbjct: 382 NRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTY 441
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
NT++ C + A KL Q++ +PD ++ L C ++ +
Sbjct: 442 NTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKAL 493
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 22/263 (8%)
Query: 71 KLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTP 130
+L E ++ +S+ + D+ IL Y +++ + L+ F + G +
Sbjct: 383 RLEEAIQMVDLMISKGCDPDI-MTFNILINGYCKANRIDDGLELF---REMSLRGVIANT 438
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL--DTRAMSVLMDTL 188
TYN +V+ +S K + +L +E+ V RR+ D + +L+D L
Sbjct: 439 VTYNTLVQGFCQSGKLEVAKKLFQEM---------------VSRRVRPDIVSYKILLDGL 483
Query: 189 VKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+ A ++F K K + L I+ ++IHG C K D A + G D
Sbjct: 484 CDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDA 543
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+Y I CR+ K D ++M E+G P +T I++ A A ++ E+
Sbjct: 544 RAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEE 603
Query: 308 MKSDDCLTDTSFYSSLIFILSKA 330
MKS D S +I +LS
Sbjct: 604 MKSSGFPADVSTVKMVINMLSSG 626
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/315 (20%), Positives = 129/315 (40%), Gaps = 33/315 (10%)
Query: 157 DELSNGYVSLAAMSTV---MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
D+LS+G V + A V + +R + ++D +++A + L C + S+
Sbjct: 58 DKLSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESK 117
Query: 214 -------IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
++I+ +C+ RK YA M ++ + G+ PD V + + C E +
Sbjct: 118 GIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEA 177
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
+ M E G KP++IT +++ L ++ +A+ + ++M + Y ++ +
Sbjct: 178 LELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNV 237
Query: 327 LSKAVRFLI-------------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
+ K+ + + Y+ +I C NA L ++E K D
Sbjct: 238 MCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKAD 297
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKE 426
T+ + C+ R DG L+R+M+ + I P T +L + K+ L A +
Sbjct: 298 IITYNTLIGGFCNAGRWDDGA---KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQ 354
Query: 427 RIDELLTHATEQRTF 441
+ E++ T
Sbjct: 355 LLKEMMQRGIAPNTI 369
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 22/226 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F++LI+G+CK + D + +EM G + V+Y ++ +C+ +EM
Sbjct: 406 FNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMV 465
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
+ +P +++ I++ L ++ +AL+++ K++ D Y +I + A +
Sbjct: 466 SRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVD 525
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
YN MIS C + A L +K+ E+ PD T+ ++
Sbjct: 526 DAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTY--NI 583
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ H D L+ EM S G ST KM+ L L
Sbjct: 584 LIRAHLGD-DDATTAAELIEEMKSSGFPADVSTVKMVINMLSSGEL 628
>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
Length = 535
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 148/334 (44%), Gaps = 37/334 (11%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F ++K++ G + T N +++AL K +++ + + +M V
Sbjct: 179 FKYSKSKFGVVPNVFTCNILIKALCKKN----------DVEGARKVFDEMPSMGIVP--- 225
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS-SQIFDVLIHGWCKTRKSDYAQKAM 235
+ + ++ V R + A +VF + D L + + +L+ G+ K + A K M
Sbjct: 226 NVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVM 285
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM ++G P+ ++Y I YC+E+ + L +M EK P+ C V+ L
Sbjct: 286 DEMEENGVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCGE 345
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR------------------FLIYN 337
++ EA K++EK+ +C D + S+LI L K L YN
Sbjct: 346 GRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCKEGNIWEARKLFNEFERGTISSLLTYN 405
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
T+I+ C E A +L + E C P+ T+ +K + K+ V+ ++ EM
Sbjct: 406 TLIAGMCEMGELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAKE---VIKVVEEM 462
Query: 398 LSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431
L KG + EST+ +L E L K LG +E ++ L
Sbjct: 463 LDKGCLLNESTYLILVEGLLK--LGKREELLNIL 494
>gi|297803426|ref|XP_002869597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315433|gb|EFH45856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 538
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 84/359 (23%), Positives = 157/359 (43%), Gaps = 69/359 (19%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAA-------- 168
F WAKT+ H+ ET+ ++ L K++KF +++++ L NG V L A
Sbjct: 102 FNWAKTRNPASHSLETHAIVLHTLTKNRKFKSAESILRDV--LVNGGVDLPAKVFDALLY 159
Query: 169 ----------------------------MSTVMRRLD------TRAMSVLMDTLVKRNSV 194
T M+ D + + M +L+ + V
Sbjct: 160 SYRECDSTPRVFDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRV 219
Query: 195 AHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A + + + + C IS ++ ++++ G+C++ K D + +++M + GF VSY
Sbjct: 220 DIALRFYREMRRCKISPNTYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATHVSYNTL 279
Query: 254 IEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I +C EK LK M K G +P+V+T ++H +A ++ EA KV+ +MK+ +
Sbjct: 280 IAGHC-EKGLLSSALKLKNMMGKNGLQPNVVTFNTLIHGFCRAVKLQEASKVFGEMKALN 338
Query: 313 CLTDTSFYSSLIFILSK------AVRF-------------LIYNTMISSACVRSEEGNAL 353
+T Y++LI S+ A RF L YNT+I C +++ A
Sbjct: 339 LPPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNTLILGLCKQAKTRKAA 398
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ +++++++ P+ T + + C ++ G L + M+ G P E T +L
Sbjct: 399 QFVKELDKENLVPNSSTFSALIMGQCVRRNADRG---FELYKSMIRSGCHPNEQTFNIL 454
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 5/141 (3%)
Query: 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CISLSSQI--FDVLIHGWCKTRK 227
M+ L+ +V +TL+ S +++ +F + C + I ++ LI G CK K
Sbjct: 334 MKALNLPPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNTLILGLCKQAK 393
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
+ A + +KE+ + P+ +++ I C ++ + K M GC P+ T I
Sbjct: 394 TRKAAQFVKELDKENLVPNSSTFSALIMGQCVRRNADRGFELYKSMIRSGCHPNEQTFNI 453
Query: 288 VMHALEKAKQIYEALKVYEKM 308
++ A K + A +V +M
Sbjct: 454 LISAFCKNEDFDGAAQVLREM 474
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 40/221 (18%), Positives = 93/221 (42%), Gaps = 25/221 (11%)
Query: 129 TPETY--NAMVEALGKSKKFGLMWELVKEIDELS------------NGYVSLAAMSTVMR 174
+P TY N ++ +S K EL+++++ L G+ +S+ ++
Sbjct: 235 SPNTYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATHVSYNTLIAGHCEKGLLSSALK 294
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAY----------KVFLKFKDC-ISLSSQIFDVLIHGWC 223
+ + L +V N++ H + KVF + K + ++ ++ LI+G+
Sbjct: 295 LKNMMGKNGLQPNVVTFNTLIHGFCRAVKLQEASKVFGEMKALNLPPNTVTYNTLINGYS 354
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
+ + A + ++M +G D ++Y I C++ RK +KE+ ++ P+
Sbjct: 355 QQGDHEMAFRFYEDMVCNGIQRDILTYNTLILGLCKQAKTRKAAQFVKELDKENLVPNSS 414
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
T + ++ + ++Y+ M C + ++ LI
Sbjct: 415 TFSALIMGQCVRRNADRGFELYKSMIRSGCHPNEQTFNILI 455
>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 654
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 134/330 (40%), Gaps = 51/330 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYNA++ A K KF EL E+ L G + T S ++D K+
Sbjct: 293 TYNALINAFVKEGKFFEAEELYDEM--LPRGIIP-----------STITYSSMIDGFCKQ 339
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
N + A +F + K C S F+ LI G+C+ ++ D K + EM + G + ++
Sbjct: 340 NRLDAAEHMFYLMATKGC-SPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTIT 398
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
YT I +C+ D L+EM G P+V+TC ++ L ++ +AL++++ M+
Sbjct: 399 YTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQ 458
Query: 310 SDDCLTDTSF-----------YSSLIFILSKAVRFL-------------------IYNTM 339
D S Y+ LI L +FL YN++
Sbjct: 459 KSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSV 518
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I C +S A ++ + S P+ T + C R+ DG L L EM
Sbjct: 519 IHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG---LELFCEMGR 575
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERID 429
+GIV T+ L K +GN +D
Sbjct: 576 RGIVANAITYITLIHGFRK--VGNINGALD 603
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 20/200 (10%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHG-FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
+I+G+C + + AQ+ ++EM + SPD V+Y I + +E F + + EM +
Sbjct: 261 MINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR 320
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336
G PS IT + ++ K ++ A ++ M + C D + +
Sbjct: 321 GIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPD----------------IITF 364
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT+I+ C + +KL ++ E + T+ + C ++ D +L++E
Sbjct: 365 NTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFC---QVGDLNAAQDLLQE 421
Query: 397 MLSKGIVPQESTHKMLAEEL 416
M+S G+ P T L + L
Sbjct: 422 MVSSGVCPNVVTCNTLLDGL 441
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 31/229 (13%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F +L+ +C K +A ++ + GF P V+++ + C E + +M
Sbjct: 116 FTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQM- 174
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
CKP+V+T T +M+ L + ++ EA+ + ++M D + +
Sbjct: 175 ---CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQ----------------I 215
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDS-CKPDCETHARSLKMC-----CHKKRMKDGM 388
Y T++ C + +AL L +K+EE S KP+ + C C R +
Sbjct: 216 TYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQ 275
Query: 389 LVLNLMREMLS-KGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHA 435
L++EML K I P T+ L K+ A+E DE+L
Sbjct: 276 ---QLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 321
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 106/263 (40%), Gaps = 19/263 (7%)
Query: 173 MRRLDTRAMS--VLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSD 229
MRR+ A S +LM + + A F K K + F L+HG C D
Sbjct: 106 MRRVPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCV---ED 162
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
+A+ ++F P+ V++T + CRE + L M E G +P+ IT ++
Sbjct: 163 RISEAL-DLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIV 221
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE 349
+ K AL + KM+ + S + I R + N SS R E
Sbjct: 222 DGMCKMGDTVSALNLLRKME------EVSHIKPNVVIWPLERRTCMINGFCSSG--RWSE 273
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
L L++ +E PD T+ + + + + L EML +GI+P T+
Sbjct: 274 AQQL-LQEMLERKKISPDVVTYNALINAFVKEGKFFEAE---ELYDEMLPRGIIPSTITY 329
Query: 410 KMLAEELEKKSLGNAKERIDELL 432
+ + K++ +A E + L+
Sbjct: 330 SSMIDGFCKQNRLDAAEHMFYLM 352
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 74/180 (41%), Gaps = 14/180 (7%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+TYN ++ L KF EL +E+ G V DT + ++ L K
Sbjct: 478 QTYNILISGLINEGKFLEAEELYEEMPH--RGIVP-----------DTITYNSVIHGLCK 524
Query: 191 RNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
++ + A ++F S + F LI+G+CK + D + EM + G + ++
Sbjct: 525 QSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAIT 584
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y I + + + +EM G P IT ++ L +++ A+ + E ++
Sbjct: 585 YITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDLQ 644
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 142/333 (42%), Gaps = 46/333 (13%)
Query: 125 GYMHTPETYNAMVEALGKSKK-FGLMWELVKEIDE------------LSNGYVSLAAMST 171
G+M +YNA+++A +SK+ + KE+ E L G+ +
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDV 223
Query: 172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIH 220
+ D + +V N++ Y K D L + ++V+I+
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G C+ + + EM + G+S D V+Y I+ YC+E +F + EM G P
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTP 343
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILSKAVRFL 334
SVIT T ++H++ KA + A++ ++M+ + Y++L+ +++A R L
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403
Query: 335 -------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
YN +I+ CV + +A+ + + ++E PD +++ L C
Sbjct: 404 REMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFC-- 461
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
R D L + REM+ KGI P T+ L +
Sbjct: 462 -RSYDVDEALRVKREMVEKGIKPDTITYSSLIQ 493
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 130/300 (43%), Gaps = 22/300 (7%)
Query: 124 TGYMHTPETYNAMVEA---LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRA 180
G+ + TYNA++ GK + + E +KE LS VS STV+ R+
Sbjct: 409 NGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE-KGLSPDVVS---YSTVLSGF-CRS 463
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
V VKR V K D I+ SS LI G+C+ R++ A +EM +
Sbjct: 464 YDVDEALRVKREMVEKGIK-----PDTITYSS-----LIQGFCEQRRTKEACDLYEEMLR 513
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD +YT I YC E D K EM EKG P V+T +++++ L K + E
Sbjct: 514 VGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTRE 573
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A ++ K+ ++ + Y +LI S + F ++I C++ A ++ + +
Sbjct: 574 AKRLLLKLFYEESVPSDVTYHTLIENCSN-IEFKSVVSLIKGFCMKGMMTEADQVFESML 632
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ KPD + + C R D L +EM+ G + T L + L K+
Sbjct: 633 GKNHKPDGTAYNIMIHGHC---RAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEG 689
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 89/209 (42%), Gaps = 25/209 (11%)
Query: 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
C S SS +FD+++ + + D A + HGF P +SY ++ R K R +
Sbjct: 130 CYSTSS-VFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSK--RNI 186
Query: 267 DY---TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+ KEM E P+V T I++ A I AL +++KM++ CL +
Sbjct: 187 SFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNV------ 240
Query: 324 IFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+ YNT+I C + + KL + + +P+ ++ + C + R
Sbjct: 241 ----------VTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGR 290
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKML 412
MK+ VL EM +G E T+ L
Sbjct: 291 MKEVSFVLT---EMNRRGYSLDEVTYNTL 316
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 113/290 (38%), Gaps = 35/290 (12%)
Query: 29 LCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPS--LASWVESLKLNEQSRISSHALSED 86
L N HC+T ++ + L+ + D V S L+ + S ++E R+ + +
Sbjct: 421 LINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKG 480
Query: 87 HETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKF 146
+ D S +++ + + EA + + G TY A++ A +
Sbjct: 481 IKPDTITYSSLIQG-FCEQRRTKEACDLY---EEMLRVGLPPDEFTYTALINA------Y 530
Query: 147 GLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-- 204
+ +L K + +L N V + D SVL++ L K++ A ++ LK
Sbjct: 531 CMEGDLEKAL-QLHNEMVEKGVLP------DVVTYSVLINGLNKQSRTREAKRLLLKLFY 583
Query: 205 --------------KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
++C ++ + LI G+C A + + M PDG +Y
Sbjct: 584 EESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAY 643
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
I +CR D RK KEM + G +T ++ AL K ++ E
Sbjct: 644 NIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNE 693
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 36/207 (17%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV-------- 266
+ VLI+G K ++ A++ + ++F P V+Y IE+ C +F+ V
Sbjct: 558 YSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIEN-CSNIEFKSVVSLIKGFC 616
Query: 267 --------DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318
D + M K KP I++H +A I +A +Y++M L T
Sbjct: 617 MKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTV 676
Query: 319 FYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+L+ L K + N++I LR SC+ A+ L
Sbjct: 677 TVIALVKALHKEGKVNELNSVIVHV-----------LR------SCELSEAEQAKVLVEI 719
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQ 405
H++ D +VL+++ EM G +P
Sbjct: 720 NHREGNMD--VVLDVLAEMAKDGFLPN 744
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 137/338 (40%), Gaps = 55/338 (16%)
Query: 123 QTGYMHTPETYNAMVEAL---GKSKKFG-LMWELVKE-------------IDELSNGYVS 165
+G + TY M+ L G+SK+ G L+ E++ E I G++S
Sbjct: 448 NSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHIS 507
Query: 166 LAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI----------- 214
LA S L+ + ++ L NS+ + ++ +Q+
Sbjct: 508 LACES-----LENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFT 562
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LIHG+CKTR + A + +++M G P+ +YT +E Y + D KV L+ M
Sbjct: 563 YSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSML 622
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------S 328
G KP IV+ L +++ + A V +++ + + D YSSLI L
Sbjct: 623 GSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADME 682
Query: 329 KAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
KAV L YN +I C + A + I P+C T+ +
Sbjct: 683 KAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALI 742
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
C + D +L ++ML +GI P + +LA
Sbjct: 743 DGNCKNGDITD---AFDLYKDMLDRGIAPDAFVYNVLA 777
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 131/314 (41%), Gaps = 42/314 (13%)
Query: 134 NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNS 193
N +++ L ++ L+W+L G++ A + D S ++ K
Sbjct: 214 NGLLKDLLRADAMELVWKL--------KGFMEGAGIPP-----DVYTYSTFLEAHCKARD 260
Query: 194 VAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
A KVF ++ +DC +++ ++V+I G C++ + A +EM +G SPD +Y
Sbjct: 261 FDAAKKVFEEMRRRDC-AMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYG 319
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ C+ ++ L EM G KP+V+ ++ K + EA + +M S
Sbjct: 320 ALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISA 379
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+ ++Y+ +I C + G A KL ++ + +PD T+
Sbjct: 380 GVQPNK----------------IMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTY 423
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL----EKKSLGNAKER 427
L + KDG L+ EM + GI+P T+ ++ L E K GN
Sbjct: 424 -HPLMQGHFQHYDKDG--AFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNL--- 477
Query: 428 IDELLTHATEQRTF 441
++E+++ + F
Sbjct: 478 LEEMISEGLKPNAF 491
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/341 (21%), Positives = 135/341 (39%), Gaps = 47/341 (13%)
Query: 117 FTWAKTQTGYMHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR 174
F + + Y +P+ TY A++ L K G + E +DE MS
Sbjct: 300 FGFKEEMVDYGLSPDAFTYGALMNGLCKG---GRLKEAKALLDE----------MSCSGL 346
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ----IFDVLIHGWCKTRKSDY 230
+ + + L+D +K A A+ + + IS Q ++D LI G CK +
Sbjct: 347 KPNVVVYATLVDGFMKEGKAAEAFDIL---NEMISAGVQPNKIMYDNLIRGLCKIGQLGR 403
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A K + EM + G PD +Y ++ + + D L EM+ G P+ T I+++
Sbjct: 404 ASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMIN 463
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR------------------ 332
L + + EA + E+M S+ + Y+ LI SK
Sbjct: 464 GLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLP 523
Query: 333 -FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
YN++I A + ++++ PD T++ + C + ++
Sbjct: 524 DLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKAD--- 580
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
L+++ML+ G+ P T+ L E K N E++ +L
Sbjct: 581 QLLQQMLNSGLKPNADTYTDLLEGYFKS---NDHEKVSSIL 618
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/356 (19%), Positives = 138/356 (38%), Gaps = 26/356 (7%)
Query: 54 PDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPD--KVVEA 111
PDE + + ++ L + ++ L+ + + D +++L + S D KV
Sbjct: 558 PDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSI 617
Query: 112 LKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMST 171
L+ + K Y ++ L +S+ + + ++ E+++ NG V
Sbjct: 618 LQSMLGSGDKPDN------HIYGIVIRNLSRSENMEVAFMVLTEVEK--NGLVP------ 663
Query: 172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDY 230
D S L+ L K + A + + K+ + ++ LI G+C++
Sbjct: 664 -----DLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISR 718
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A+ + G P+ V+YT I+ C+ D K+M ++G P ++
Sbjct: 719 ARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLAT 778
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEG 350
A + +AL + E+M + S +S+L+ K R ++ R
Sbjct: 779 GCSDAADLEQALFLTEEM-FNRGYAHVSLFSTLVRGFCKRGRLQETEKLLHVMMDREIVP 837
Query: 351 NALKLRQKIEE-DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM-REMLSKGIVP 404
NA + I E CE H R KK + +L+ +M++KG++P
Sbjct: 838 NAQTVENVITEFGKAGKLCEAH-RVFAELQQKKASQSSTDRFSLLFTDMINKGLIP 892
>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 873
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 115/250 (46%), Gaps = 31/250 (12%)
Query: 173 MRRLDTR----AMSVLMDTLVKRNSVAHAYKVFLK--FKDCISLSSQ----IFDVLIHGW 222
M+RL R + L++ LV+ NS +H+ VF + F+D + L Q F++LIHG+
Sbjct: 164 MKRLRFRPNLLTCNTLLNALVRSNS-SHSL-VFSREVFQDAVKLGVQPNVNTFNILIHGY 221
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
C ++ A + + +M ++G PD V+Y + C+ +V L +M+ G P+
Sbjct: 222 CSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNR 281
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISS 342
T I++H K K + EA +V E M L D YNTM+
Sbjct: 282 NTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDV----------------WTYNTMVRG 325
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C + A++LR K+E PD T+ +L C + R D L+ EM ++G+
Sbjct: 326 LCDEGKIDEAVRLRDKMESFKLVPDVVTY-NTLIDGCFEHRGSDA--AFKLVEEMKARGV 382
Query: 403 VPQESTHKML 412
TH ++
Sbjct: 383 KENGVTHNIM 392
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 116/293 (39%), Gaps = 35/293 (11%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
T G + TYN MV L K E V+ D+ M + D
Sbjct: 308 TGKGMLPDVWTYNTMVRGLCDEGKID---EAVRLRDK----------MESFKLVPDVVTY 354
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L+D + A+K+ + K + + +++I +C K D A M +M +
Sbjct: 355 NTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVE 414
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
GFSPD +Y I YC+ + + EM KG K T ++H + KQ+ +
Sbjct: 415 SGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDD 474
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN-ALKLRQKI 359
A + K + + D Y +LI + E+ + ALKL +++
Sbjct: 475 AYTLTMKARKRGYILDEVTYGTLIM-----------------GYFKDEQADRALKLWEEM 517
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+E T+ ++ C + + LN E+L KG+VP EST ++
Sbjct: 518 KETGIVATIITYNTIIRGLCLSGKTDQAVDKLN---ELLEKGLVPDESTSNII 567
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/363 (20%), Positives = 135/363 (37%), Gaps = 82/363 (22%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
++G+ TYN M+ K+ G M E K +DE+ + +LDT ++
Sbjct: 414 ESGFSPDCFTYNTMINGYCKA---GKMAEAYKMMDEMGRKGL----------KLDTFTLN 460
Query: 183 VLMDTLVKRNSVAHAYKVFLK--------------------FKD---------------- 206
L+ T+ + AY + +K FKD
Sbjct: 461 TLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKET 520
Query: 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
I + ++ +I G C + K+D A + E+ + G PD + I YC E K
Sbjct: 521 GIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKA 580
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
+M E KP + TC I++ L + + + L ++ S DT Y+ +I
Sbjct: 581 FQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISS 640
Query: 327 LSKAVRF-------------------LIYNTMIS--SACVRSEEGNALKLR-----QKIE 360
K R YN +++ + R+EE L L+ Q+++
Sbjct: 641 FCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKGQQVK 700
Query: 361 EDSCKPDCET----HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
P+ T ++ + C + + KD M L ++ KG+ + T+ L + L
Sbjct: 701 TQDTSPELGTSDMMYSEQISSLCTQGKYKDAM---KLFQQAEQKGVSLNKYTYIKLMDGL 757
Query: 417 EKK 419
K+
Sbjct: 758 LKR 760
>gi|125569053|gb|EAZ10568.1| hypothetical protein OsJ_00400 [Oryza sativa Japonica Group]
Length = 514
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/385 (23%), Positives = 154/385 (40%), Gaps = 54/385 (14%)
Query: 88 ETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFG 147
E D D V ++L+K+ S KV + F WA Y H Y M++ LG+ KK
Sbjct: 89 EMDEDVVLKVLQKQR-SNWKVALSF----FKWAAGLPQYNHGSRAYTEMLDILGRMKKVR 143
Query: 148 LMWELVKEIDELSNGYVSLAAMSTVMRR------------------------LDTRAMSV 183
LM +L EI S V M V+ LD +
Sbjct: 144 LMRQLFDEIPVESRQSVVTNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQI 203
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ +L + V A +FL+ KD + ++++++GWC A++ E+
Sbjct: 204 LLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEIIASKL 263
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD +Y FI + M EKG P V C ++ L K+I EAL+
Sbjct: 264 KPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALE 323
Query: 304 VYEKMKSDDCLTDTSFYSSLI--------------FILSKAVRFLIYNTMISSACVRSEE 349
++ +M C D + Y++LI + V+ + N M S +++ E
Sbjct: 324 IFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYILKTTE 383
Query: 350 --GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
+ + L Q++E+ C+ D +T+ L + K LV + EM G P +
Sbjct: 384 KPKDVISLMQRMEKSGCRLDSDTYNLILNLYVSWDYEKGVQLVWD---EMERNGSGPDQR 440
Query: 408 THKMLAEELEKKSLGNAKERIDELL 432
+ ++ L ++ +++DE L
Sbjct: 441 SFTIMVHGL------HSHDKLDEAL 459
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 127/291 (43%), Gaps = 32/291 (10%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY A++ A ++KK +L++E+ E + +VL+D L K
Sbjct: 59 TYTALIAAFARAKKLEEAMKLLEEMRERGC-------------PPNLVTYNVLVDALCKL 105
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ V A V K + + + F+ L+ G+CK D A+K + M G P+ V+Y
Sbjct: 106 SMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTY 165
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ I+ C+ + F + L+EM+ G P T + ++H L KA +I EA ++ +M
Sbjct: 166 SALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAG 225
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
C D YSS+I K+ + L A K Q++ + PD T
Sbjct: 226 SGCTPDVVVYSSIIHAFCKSGKLL----------------EAQKTLQEMRKQRKSPDVVT 269
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ + C ++ + ++L+ M+E S ++P T+ + L K +
Sbjct: 270 YNTVIDGLCKLGKIAEAQVILDQMQE--SGDVLPDVVTYSTVINGLCKSDM 318
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 20/199 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKA 234
D + ++D L K +A A + + ++ + + + +I+G CK+ AQK
Sbjct: 266 DVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKL 325
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ M + G +PD V+YT I+ C+ + +Y L+ M+ GC P+V+T T ++ L K
Sbjct: 326 LDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCK 385
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV--RSEEGNA 352
A+++ EA +V E+M++ C + + YNTM++ CV R +E
Sbjct: 386 ARKVDEAERVMEEMRNAGCPPN----------------LVTYNTMVNGLCVSGRIKEAQQ 429
Query: 353 LKLRQKIEEDSCKPDCETH 371
L R K C PD T+
Sbjct: 430 LVQRMKDGRAECSPDAATY 448
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 143/320 (44%), Gaps = 35/320 (10%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY+A+++ L KS+KF E+++E+ ++G D S L+ L K
Sbjct: 164 TYSALIDGLCKSQKFLEAKEVLEEMK--ASGVTP-----------DAFTYSALIHGLCKA 210
Query: 192 NSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ + A ++ + + ++ +IH +CK+ K AQK ++EM + SPD V+Y
Sbjct: 211 DKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTY 270
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKG-CKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
I+ C+ + L +MQE G P V+T + V++ L K+ + EA K+ ++M
Sbjct: 271 NTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMC 330
Query: 310 SDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEG 350
C D Y+++I L K R + Y T+IS C +
Sbjct: 331 KAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVD 390
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A ++ +++ C P+ T+ + C R+K+ ++ M++ ++ P +T++
Sbjct: 391 EAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAE-CSPDAATYR 449
Query: 411 MLAEELEKKSLGNAKERIDE 430
+ L L E++ E
Sbjct: 450 TIVNALMSSDLVQEAEQLLE 469
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 96/220 (43%), Gaps = 23/220 (10%)
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
C A + ++EM GF+PD ++T I D D + ++ GC P+V
Sbjct: 1 CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDL---DGAMDHLRSMGCDPNV 57
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISS 342
+T T ++ A +AK++ EA+K+ E+M+ C + + YN ++ +
Sbjct: 58 VTYTALIAAFARAKKLEEAMKLLEEMRERGCPPN----------------LVTYNVLVDA 101
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C S G A + +K+ E P+ T + C + + D +L + M++KG+
Sbjct: 102 LCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGI---MVAKGM 158
Query: 403 VPQESTHKMLAEELEK-KSLGNAKERIDELLTHATEQRTF 441
P T+ L + L K + AKE ++E+ F
Sbjct: 159 RPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAF 198
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 26/203 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL--------------- 176
TYN +++ L K K ++ ++ E + + STV+ L
Sbjct: 269 TYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDR 328
Query: 177 --------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRK 227
D + ++D L K + A + K + + + LI G CK RK
Sbjct: 329 MCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARK 388
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE--KGCKPSVITC 285
D A++ M+EM G P+ V+Y + C ++ ++ M++ C P T
Sbjct: 389 VDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATY 448
Query: 286 TIVMHALEKAKQIYEALKVYEKM 308
+++AL + + EA ++ E+M
Sbjct: 449 RTIVNALMSSDLVQEAEQLLEQM 471
>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
Length = 768
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 147/355 (41%), Gaps = 56/355 (15%)
Query: 109 VEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEID----ELSNG-- 162
V AL+ F WA Q ++ + Y ++ LGK+ F M +++E+ E G
Sbjct: 78 VAALRVF--NWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGIF 135
Query: 163 ------------YVSLAAMSTVMR-----RLDTRAMSVLMDTLVKRNSV-----AHAYKV 200
Y + + VM + DTR +VL++ LV N + AH+ V
Sbjct: 136 LIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMV 195
Query: 201 FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
+ + +S F++LI CK + A M+EM +G SPD ++T ++ Y
Sbjct: 196 RRRIRHDVS----TFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEG 251
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
+ ++M E GC + +T ++++ K +I +AL ++ S+ D Y
Sbjct: 252 GNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTY 311
Query: 321 SSLIFILSKAVR-------------------FLIYNTMISSACVRSEEGNALKLRQKIEE 361
++L+ L K YN++IS C E A+K+ ++
Sbjct: 312 NTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVS 371
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C P+ T+ + C + R+ + + R + SKGI+P T L + L
Sbjct: 372 RDCSPNAVTYNAIISSLCKENRVDEAT---EIARLLTSKGILPDVCTFNSLIQGL 423
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 133/288 (46%), Gaps = 36/288 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++++L S+K L+KE++ NG A + V+ + L+D K
Sbjct: 450 TYNMLIDSLCSSRKLEEALNLLKEME--LNG----CARNVVI-------YNTLIDGFCKN 496
Query: 192 NSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A ++F + + +S S ++ LI G CK+++ + A + M +M G PD +Y
Sbjct: 497 KRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTY 556
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ H+C+ D +K ++ M GC P ++T ++ L KA ++ A ++ ++
Sbjct: 557 NSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQM 616
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+L+ YN +I + R+ A++L +++ + S PD T
Sbjct: 617 KG------------MVLTPHA----YNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAIT 660
Query: 371 HARSLKMCCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLAEEL 416
+ + C+ G + ++ EM+ +G +P+ S+ MLAE L
Sbjct: 661 YKIVYRGLCN----GGGPIGEAVDFTVEMIERGNIPEFSSFVMLAEGL 704
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 106/236 (44%), Gaps = 23/236 (9%)
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+VLI+G+CK + D A ++E GF PD +Y + C+ + + M
Sbjct: 277 NVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLL 336
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR--- 332
G P + T ++ L K +I EA+K+ ++M S DC + Y+++I L K R
Sbjct: 337 GGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDE 396
Query: 333 ----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+N++I C+ S +A+ L ++++ C+PD T+ +
Sbjct: 397 ATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLID 456
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
C +++++ LNL++EM G + L + + K + A+E DE+
Sbjct: 457 SLCSSRKLEEA---LNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEM 509
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 131/309 (42%), Gaps = 36/309 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN+++ L K G + E VK +D++ + S A++ + ++ +L K
Sbjct: 345 TYNSLISGLCK---LGEIEEAVKILDQMVSRDCSPNAVT----------YNAIISSLCKE 391
Query: 192 NSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
N V A ++ L I F+ LI G C + A +EM G PD +Y
Sbjct: 392 NRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTY 451
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I+ C + + LKEM+ GC +V+ ++ K K+I EA +++++M+
Sbjct: 452 NMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMEL 511
Query: 311 DDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGN 351
D+ Y++LI L K+ R YN++++ C +
Sbjct: 512 QGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKK 571
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A + Q + C PD T+A + C R++ + L+R + KG+V +
Sbjct: 572 AADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQ---VASRLLRSIQMKGMVLTPHAYNP 628
Query: 412 LAEELEKKS 420
+ + L K++
Sbjct: 629 VIQALFKRN 637
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 23/230 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ +++G CK + + A+K EM + G +PDGVSY + YC+ + EM
Sbjct: 230 FNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMT 289
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
KG P V+T T ++H + KA + A+ + +M+ + +++LI K
Sbjct: 290 RKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLD 349
Query: 330 ----AVR----------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
AVR + YN +I+ C+ A +L +++E KPD T++ L
Sbjct: 350 DALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTIL 409
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNA 424
C D L ++ML G++P T+ L L E+K LG+A
Sbjct: 410 SAYCKN---GDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDA 456
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 94/423 (22%), Positives = 168/423 (39%), Gaps = 67/423 (15%)
Query: 42 LPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHAL-SEDHETDVDKVSEILRK 100
LPS +FFD+ D V P++ ++ I AL H + V +R
Sbjct: 138 LPSARRFFDSML--SDGVAPNVYTY----------NILVRALCGRGHRKEALSVLRDMRG 185
Query: 101 RYPSPDKVV--EALKCFC----------FTWAKTQTGYMHTPETYNAMVEALGKSKKF-- 146
P+ V + FC + G T+N++V + K+ +
Sbjct: 186 AGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMED 245
Query: 147 --GLMWELVKE--------IDELSNGYV-------SLAAMSTVMRR---LDTRAMSVLMD 186
+ E+VKE + L GY +L+ + + R+ D + L+
Sbjct: 246 ARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIH 305
Query: 187 TLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+ K ++ A + + ++ + ++ F LI G+CK D A A++EM Q P
Sbjct: 306 VMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQP 365
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
V Y I YC + ++EM+ KG KP V+T + ++ A K + A ++
Sbjct: 366 SVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLN 425
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
++M + L D YSSLI +L + R G+A L + + +
Sbjct: 426 QQMLENGVLPDAITYSSLIRVLCEEKRL----------------GDAHVLFKNMISLGLQ 469
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAK 425
PD T+ + C + ++ L+L EM+ G++P T+ +L L K +
Sbjct: 470 PDEVTYTSLIDGHCKEGNVERA---LSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEA 526
Query: 426 ERI 428
+R+
Sbjct: 527 QRL 529
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 98/236 (41%), Gaps = 25/236 (10%)
Query: 204 FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263
D ++ + +++L+ C A +++M G P+ V+Y + +CR +
Sbjct: 149 LSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEV 208
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+ + + M+E G KP+++T V++ + KA ++ +A KV+++M + D
Sbjct: 209 DRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDG------ 262
Query: 324 IFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+ YNT++ C AL + ++ PD T + + C
Sbjct: 263 ----------VSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGN 312
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQR 439
++ + L+REM +G+ E T L + KK +D+ L E R
Sbjct: 313 LERA---VGLVREMRERGLQMNEITFTALIDGFCKKGF------LDDALLAVREMR 359
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 102/231 (44%), Gaps = 10/231 (4%)
Query: 204 FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263
D I+ SS LI C+ ++ A K M G PD V+YT I+ +C+E +
Sbjct: 434 LPDAITYSS-----LIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNV 488
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+ EM + G P V+T +++++ L K+ + EA ++ K+ ++ + Y +L
Sbjct: 489 ERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDAL 548
Query: 324 IFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+ A + ++ C++ A K+ Q I + + D ++ + C +
Sbjct: 549 MRCCRNAELKSVL-ALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGN 607
Query: 384 MKDGMLVLNLMREMLSKGIVPQE-STHKMLAEELEKKSLGNAKERIDELLT 433
+ M L+ ++ML G P ST ++ EK + A + I +LL
Sbjct: 608 V---MKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLN 655
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 49/107 (45%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
L+ G+C + A K + + ++ DG Y+ I +CRE + K K+M + G
Sbjct: 563 LLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCG 622
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
P+ + ++ L + + EA +V +++ + L D +LI
Sbjct: 623 FAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALI 669
>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
Length = 559
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 134/305 (43%), Gaps = 34/305 (11%)
Query: 140 LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR--------RL--DTRAMSVLMDTLV 189
G+ K GL +V + L NGY + R R+ D SVL++ L
Sbjct: 248 FGEIGKRGLRPTVV-SFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLC 306
Query: 190 KRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
K + A K+FL+ D + + + F LI+G C T ++D + ++M + G PD +
Sbjct: 307 KEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVI 366
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+Y I C+ D R+ + EM ++G KP T T+++ K + AL++ ++M
Sbjct: 367 TYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEM 426
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRFL-------------------IYNTMISSACVRSEE 349
+ D +++LI + + + Y +I C + +
Sbjct: 427 VKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDV 486
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
KL ++++ D P T+ L C + +MK+ ++L+ ML+ G+VP + T+
Sbjct: 487 KTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLD---AMLNLGVVPDDITY 543
Query: 410 KMLAE 414
+L E
Sbjct: 544 NILLE 548
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 123/290 (42%), Gaps = 54/290 (18%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L D L+K N + A+ + + DC + F+VL+H CK K + AQ E+ +
Sbjct: 196 LFDRLMKLNLTSPAWAFYEEILDC-GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKR 254
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G P VS+ I YC+ + + + M E P V T +++++ L K Q+ +A
Sbjct: 255 GLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDA 314
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIF-----------------ILSKAVR--FLIYNTMISS 342
K++ +M + + +++LI +L K V+ + YNT+I+
Sbjct: 315 NKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLING 374
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC-----------HKKRMKDGMLVL 391
C + A KL ++ + KPD T+ + CC K+ +K+G+ +
Sbjct: 375 LCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELD 434
Query: 392 NL---------------------MREMLSKGIVPQESTHKMLAEELEKKS 420
N+ +REML GI P ++T+ M+ KK
Sbjct: 435 NVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKG 484
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 14/194 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K +LV E M+ + D ++L+D K
Sbjct: 367 TYNTLINGLCKVGDLREAKKLVIE-------------MTQRGLKPDKFTYTMLIDGCCKE 413
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A ++ + K+ I L + F LI G+C+ + A++ ++EM + G PD +Y
Sbjct: 414 GDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATY 473
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T I +C++ D + LKEMQ G P V+T ++++ L K Q+ A + + M +
Sbjct: 474 TMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLN 533
Query: 311 DDCLTDTSFYSSLI 324
+ D Y+ L+
Sbjct: 534 LGVVPDDITYNILL 547
>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680 [Vitis vinifera]
gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
Length = 592
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 134/305 (43%), Gaps = 34/305 (11%)
Query: 140 LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR--------RL--DTRAMSVLMDTLV 189
G+ K GL +V + L NGY + R R+ D SVL++ L
Sbjct: 248 FGEIGKRGLRPTVV-SFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLC 306
Query: 190 KRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
K + A K+FL+ D + + + F LI+G C T ++D + ++M + G PD +
Sbjct: 307 KEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVI 366
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+Y I C+ D R+ + EM ++G KP T T+++ K + AL++ ++M
Sbjct: 367 TYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEM 426
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRFL-------------------IYNTMISSACVRSEE 349
+ D +++LI + + + Y +I C + +
Sbjct: 427 VKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDV 486
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
KL ++++ D P T+ L C + +MK+ ++L+ ML+ G+VP + T+
Sbjct: 487 KTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLD---AMLNLGVVPDDITY 543
Query: 410 KMLAE 414
+L E
Sbjct: 544 NILLE 548
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 123/290 (42%), Gaps = 54/290 (18%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L D L+K N + A+ + + DC + F+VL+H CK K + AQ E+ +
Sbjct: 196 LFDRLMKLNLTSPAWAFYEEILDC-GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKR 254
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G P VS+ I YC+ + + + M E P V T +++++ L K Q+ +A
Sbjct: 255 GLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDA 314
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIF-----------------ILSKAVR--FLIYNTMISS 342
K++ +M + + +++LI +L K V+ + YNT+I+
Sbjct: 315 NKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLING 374
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC-----------HKKRMKDGMLVL 391
C + A KL ++ + KPD T+ + CC K+ +K+G+ +
Sbjct: 375 LCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELD 434
Query: 392 NL---------------------MREMLSKGIVPQESTHKMLAEELEKKS 420
N+ +REML GI P ++T+ M+ KK
Sbjct: 435 NVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKG 484
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 99/243 (40%), Gaps = 23/243 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + L++ L K + A K+ ++ + + + +LI G CK + A +
Sbjct: 364 DVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIR 423
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KEM + G D V++T I +CRE + + TL+EM E G KP T T+V+H K
Sbjct: 424 KEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKK 483
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ K+ ++M+ D + YN +++ C + + NA L
Sbjct: 484 GDVKTGFKLLKEMQCD----------------GHVPGVVTYNVLLNGLCKQGQMKNANML 527
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ PD T+ L+ C +D + KG+V ++ L +
Sbjct: 528 LDAMLNLGVVPDDITYNILLEGHCKHGNRED------FDKLQSEKGLVQDYGSYTSLIGD 581
Query: 416 LEK 418
L K
Sbjct: 582 LRK 584
>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
Length = 737
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 145/340 (42%), Gaps = 60/340 (17%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
T G + TYN M+ ++ + +L++ + E D
Sbjct: 403 TDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGC-------------PPDVVTY 449
Query: 182 SVLMDTLVKRNSVAHAYKVF--LK----FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ ++ L K + V AY+V+ L+ F D ++ S+ LI G CK+R+ D A+K +
Sbjct: 450 NSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCST-----LIDGLCKSRRLDDAEKLL 504
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM ++G +PD V+YT I +C+ K EM +KGC P+VIT +IV+ L K+
Sbjct: 505 REMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKS 564
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIY 336
++ + + + M D Y+S+I L K A + Y
Sbjct: 565 ARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTY 624
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL----KMCCHKKRMKDGMLVLN 392
N ++ C S A+ L + +E D C PD T+ K H K +
Sbjct: 625 NVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFR------- 677
Query: 393 LMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
L + M S+G P + +L +L A+E++D+ +
Sbjct: 678 LFQAMKSRGCSPTPFMYSLLLTKLV------AEEKMDQAM 711
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 27/241 (11%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ V++ AY +F + S S + LI+G+CK R A + + EM + G
Sbjct: 138 LLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRG 197
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTL---KEMQEKGCKPSVITCTIVMHALEKAKQIY 299
P Y I+ C D +VD L ++MQ + C PSVIT TI++ AL K+ +I
Sbjct: 198 IVPHNAVYNTIIKGLC---DNGRVDSALVHYRDMQ-RNCAPSVITYTILVDALCKSARIS 253
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
+A + E M C A + YNT+I+ C A+ L ++
Sbjct: 254 DASLILEDMIEAGC----------------APNVVTYNTLINGFCKLGNMDEAVVLFNQM 297
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
E+SC PD T+ + C ++R +DG L++EM+ G P T+ L + L K
Sbjct: 298 LENSCSPDVFTYNILIDGYCKQERPQDGA---KLLQEMVKYGCEPNFITYNTLMDSLVKS 354
Query: 420 S 420
Sbjct: 355 G 355
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 111/258 (43%), Gaps = 25/258 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKV--FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ LMD+LVK A+ + + +DC S F+++I +CK + D A + + M
Sbjct: 345 NTLMDSLVKSGKYIDAFNLAQMMLRRDC-KPSHFTFNLMIDMFCKVGQLDLAYELFQLMT 403
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G PD +Y I CR L+ M E GC P V+T ++ L KA Q+
Sbjct: 404 DRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVD 463
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMI 340
EA +VYE +++ D S+LI L K+ R + Y +I
Sbjct: 464 EAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILI 523
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
C + +L ++ + C P T++ + C R++DG + L++ ML +
Sbjct: 524 HGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCM---LLKTMLER 580
Query: 401 GIVPQESTHKMLAEELEK 418
G+ P + + + L K
Sbjct: 581 GVTPDAIVYTSVIDGLCK 598
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 138/336 (41%), Gaps = 38/336 (11%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F W Q GY H+ T N ++ A + KK ++L K N L +
Sbjct: 119 FDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFK------NHRCGLCSP------- 165
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D+ S L++ K AY++ + K I + +++ +I G C + D A
Sbjct: 166 DSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHY 225
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++M Q +P ++YT ++ C+ L++M E GC P+V+T +++ K
Sbjct: 226 RDM-QRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKL 284
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIY 336
+ EA+ ++ +M + C D Y+ LI K R F+ Y
Sbjct: 285 GNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITY 344
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT++ S + +A L Q + CKP T + M C ++ L L +
Sbjct: 345 NTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLD---LAYELFQL 401
Query: 397 MLSKGIVPQESTHK-MLAEELEKKSLGNAKERIDEL 431
M +G +P T+ M++ + +A++ ++ +
Sbjct: 402 MTDRGCLPDIYTYNIMISGACRANRIDDARQLLERM 437
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 136/308 (44%), Gaps = 45/308 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAM-STVMR------RLDT-----R 179
TY+ ++ K++ F + L+ E+++ G V A+ +T+++ R+D+ R
Sbjct: 169 TYSTLINGFCKARDFQQAYRLLDEMEK--RGIVPHNAVYNTIIKGLCDNGRVDSALVHYR 226
Query: 180 AM-----------SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRK 227
M ++L+D L K ++ A + + + + ++ LI+G+CK
Sbjct: 227 DMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGN 286
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
D A +M ++ SPD +Y I+ YC+++ + L+EM + GC+P+ IT
Sbjct: 287 MDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNT 346
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------- 333
+M +L K+ + +A + + M DC ++ +I + K +
Sbjct: 347 LMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRG 406
Query: 334 -----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
YN MIS AC + +A +L +++ E C PD T+ + C ++ +
Sbjct: 407 CLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAY 466
Query: 389 LVLNLMRE 396
V ++R
Sbjct: 467 EVYEVLRN 474
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 84/184 (45%), Gaps = 14/184 (7%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G + T TY+ +++ L KS + + +G + L M D + +
Sbjct: 546 GCVPTVITYSIVIDKLCKSAR-------------VRDGCMLLKTMLERGVTPDAIVYTSV 592
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D L K +S AY+++ K + + ++VL+ CK + D A ++ M G
Sbjct: 593 IDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGC 652
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD V+Y + + + + K + M+ +GC P+ ++++ L +++ +A++
Sbjct: 653 LPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAME 712
Query: 304 VYEK 307
++E+
Sbjct: 713 IWEE 716
>gi|125524449|gb|EAY72563.1| hypothetical protein OsI_00429 [Oryza sativa Indica Group]
Length = 535
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/369 (23%), Positives = 146/369 (39%), Gaps = 48/369 (13%)
Query: 88 ETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFG 147
E D D V ++L+K+ S KV + F WA Y H Y M++ LG+ KK
Sbjct: 109 EMDEDVVLKVLQKQR-SNWKVALSF----FKWAAGLPQYNHGSRAYTEMLDILGRMKKVR 163
Query: 148 LMWELVKEIDELSNGYVSLAAMSTVMRR------------------------LDTRAMSV 183
LM +L EI S V M V+ LD +
Sbjct: 164 LMRQLFDEIPMESRQSVITNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQI 223
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ +L + V A +FL+ KD + ++++++GWC A++ E+
Sbjct: 224 LLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEIIASKL 283
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD +Y FI + M EKG P V C ++ L K+I EAL+
Sbjct: 284 KPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALE 343
Query: 304 VYEKMKSDDCLTDTSFYSSLI--------------FILSKAVRFLIYNTMISSACVRSEE 349
++ +M C D + Y++LI + V+ + N M S +++ E
Sbjct: 344 IFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYILKTTE 403
Query: 350 --GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
+ + L Q++E+ C+ D +T+ L + K LV + EM G P +
Sbjct: 404 KPKDVISLMQRMEKSGCRLDSDTYNLILNLYVSWDYEKGVQLVWD---EMERNGSGPDQR 460
Query: 408 THKMLAEEL 416
+ ++ L
Sbjct: 461 SFTIMVHGL 469
>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
Length = 799
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 122/287 (42%), Gaps = 23/287 (8%)
Query: 146 FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF- 204
+G+M + EL L+ M+ L+ A + ++ L V+ A +V
Sbjct: 288 YGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMV 347
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
+ L + +F ++ G+C+ A+ EM + G + DGV+YT I CR + +
Sbjct: 348 MHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELK 407
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ + L+EM++KG +T T+++ K ++ EA V+ KM + Y++L
Sbjct: 408 EAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALS 467
Query: 325 FILSKA-------------------VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
L K + YN++I+ C A++ ++E K
Sbjct: 468 DGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLK 527
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
PD T+ + C K + +L++EML KGI P T+ +L
Sbjct: 528 PDVYTYTTIIGALCQSKELDRAH---SLLQEMLDKGIKPTIVTYNVL 571
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/311 (20%), Positives = 133/311 (42%), Gaps = 42/311 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMS--------T 171
TY A++ L ++ + +++E+++ L +GY + M+
Sbjct: 392 TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451
Query: 172 VMRRLDTRAMS--VLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKS 228
V +R+ ++ L D L K+ V A ++ + + L+ ++ LI+G CK
Sbjct: 452 VQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+ A + M +M + G PD +YT I C+ K+ + L+EM +KG KP+++T ++
Sbjct: 512 EQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVL 571
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
M+ + ++ ++ E M + +T+ YN+++ C+
Sbjct: 572 MNGFCMSGRVEGGKRLLEWMLEKNIHPNTT----------------TYNSLMKQYCIEKN 615
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+ ++ + + P+ T+ +K C + MK+ L EM+ KG S+
Sbjct: 616 MKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEA---LYFHSEMIEKGFRLTASS 672
Query: 409 HKMLAEELEKK 419
+ L L KK
Sbjct: 673 YNALIRLLNKK 683
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 100/247 (40%), Gaps = 26/247 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++L+ C + A + EM PD V+Y + YC + L EM
Sbjct: 256 YNILLKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMA 312
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
+G + + + T V+ L Q+ +A++V E M + D + +++++ +
Sbjct: 313 ARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLA 372
Query: 330 --------------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
A + Y +I+ C E A ++ Q++E+ D T+ +
Sbjct: 373 AARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLI 432
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTH 434
C +M + LV N +M+ K + P T+ L++ L K+ + A E + E+ +
Sbjct: 433 DGYCKVGKMTEAFLVHN---KMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSK 489
Query: 435 ATEQRTF 441
E F
Sbjct: 490 GLELNIF 496
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/299 (19%), Positives = 109/299 (36%), Gaps = 62/299 (20%)
Query: 85 EDHETDVDKVS-EILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKS 143
ED DVD V+ +L Y K+ EA F Q TY A+ + L K
Sbjct: 417 EDKGLDVDAVTYTVLIDGYCKVGKMTEA---FLVHNKMVQKRVTPNVVTYTALSDGLCKQ 473
Query: 144 KKFGLMWELVKEI------------DELSNGYVSLAAMSTVMRRL----------DTRAM 181
EL+ E+ + L NG + MR + D
Sbjct: 474 GDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTY 533
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ ++ L + + A+ + + D I + ++VL++G+C + + + ++ ++ M +
Sbjct: 534 TTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLE 593
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVD--------------------------------- 267
P+ +Y ++ YC EK+ +
Sbjct: 594 KNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKE 653
Query: 268 --YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
Y EM EKG + + + ++ L K K+ EA +++EKM+ D + Y+ I
Sbjct: 654 ALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYI 712
>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
Length = 563
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 135/311 (43%), Gaps = 36/311 (11%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
TG + TYN+M+ K +EL E+ E A + V +
Sbjct: 263 TGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERG------VACNVV-------TYNT 309
Query: 184 LMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ L + V A ++ + K D +S + ++ LI G+C D A +M G
Sbjct: 310 LIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSG 369
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
SP +Y I + K+ V ++EM+ +G PS +T TI+M AL ++ I +A
Sbjct: 370 QSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAF 429
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFIL---------SKAVRFL----------IYNTMISSA 343
++Y M+ + D Y LI L SK + L IYNTMI
Sbjct: 430 QIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGY 489
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C AL+L +++ E+ P+ ++ ++++ C ++ + + L+++M+ G+
Sbjct: 490 CKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEV---LLKDMIELGLK 546
Query: 404 PQESTHKMLAE 414
P S M+++
Sbjct: 547 PSISIWNMISK 557
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 105/248 (42%), Gaps = 22/248 (8%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ L+K N A++VF + K + L F ++I G C+ D + + +M + G
Sbjct: 136 LLILLIKSNFFEKAWRVFNETKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGL 195
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
SP+ V YT I+ C+ D + +M E + T T++++ K + ++
Sbjct: 196 SPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIE 255
Query: 304 VYEKMKSDDCLTDTSFYSSLI------------FILSKAVR-------FLIYNTMISSAC 344
+YEKMK + + Y+S+I F L +R + YNT+I C
Sbjct: 256 LYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLC 315
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
A +L +++ D P+ ++ + C + + N M+ S G P
Sbjct: 316 QERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMK---SSGQSP 372
Query: 405 QESTHKML 412
+T+ +L
Sbjct: 373 SLATYNIL 380
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 113/274 (41%), Gaps = 20/274 (7%)
Query: 146 FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205
FG+M + E+ L G+ L M + + + L+D K + ++F K
Sbjct: 167 FGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMG 226
Query: 206 DCISLSSQ-IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
+ +++Q + VLI+G+ K + ++M G P+ +Y I C +
Sbjct: 227 ELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLN 286
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
EM+E+G +V+T ++ L + +++ EA ++ +MK D
Sbjct: 287 NAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGL----------- 335
Query: 325 FILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
+ + YNT+I C A L +++ P T+ +
Sbjct: 336 -----SPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYN---ILIAGFSEA 387
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
K+ V +++REM ++G+ P + T+ +L + L +
Sbjct: 388 KNSAGVTDMVREMEARGLSPSKVTYTILMDALVR 421
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 5/197 (2%)
Query: 90 DVDKVSEI---LRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKF 146
++DK S + ++ SP + F+ AK G A + K
Sbjct: 354 NLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYT 413
Query: 147 GLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD 206
LM LV+ D + + ++M D VL+ L + A K+F +
Sbjct: 414 ILMDALVRS-DNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDE 472
Query: 207 C-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
+ + I++ +I+G+CK S A + +KEM ++G P+ SY I+ C+++ + +
Sbjct: 473 MHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTE 532
Query: 266 VDYTLKEMQEKGCKPSV 282
+ LK+M E G KPS+
Sbjct: 533 AEVLLKDMIELGLKPSI 549
>gi|356546852|ref|XP_003541836.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15200-like [Glycine max]
Length = 481
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 162/372 (43%), Gaps = 54/372 (14%)
Query: 117 FTWA-KTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL--AAMSTVM 173
F WA KT TGY + + N +V+ LGK ++F EL + +DE+S L A +T++
Sbjct: 88 FNWASKTTTGYQPSSDVCNEIVDILGKMQRFQ---ELHQVLDEMSKREELLDEAVFATLV 144
Query: 174 RR-----------------------LDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCIS 209
RR L++ A L+ L + V A +F K +
Sbjct: 145 RRFVGAHKVDEAIQLFYRRKEFGLELNSEAFRTLLMWLCRYKHVEDAEALFHNSVKKGLR 204
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
++++V+++GWC S A++ +++ PD +Y FI+ ++
Sbjct: 205 ADIKMWNVILNGWCVLGNSHEAKRVWRDIVASPCKPDIFTYATFIKALTKKGKLGTALKL 264
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
+ M +KG KP V+ C ++ AL K+I EAL+++ M C + + Y+SLI + K
Sbjct: 265 FRGMWDKGGKPDVVICNCIIDALCFKKRIPEALEIFCDMSERGCEPNVATYNSLIKYMCK 324
Query: 330 AVRFLIYNTMIS------SACVRS------------EEGNALKLRQKIEEDSCKPDCETH 371
R ++ +C+ + E G ++ +++E + C + + +
Sbjct: 325 IQRMKKVYELVDEMERKKGSCLPNAVTYCYLLKSLKEPGEVCRVLERMERNGCGMNDDVY 384
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK-MLAEELEKKSLGNAKERIDE 430
L++ + DG V EM G P ++ M+ E EK + +A ++E
Sbjct: 385 NMVLRL---YMKWDDGDGVRKTWEEMERNGWGPDRRSYTIMIHENFEKGRVKDAVRYLEE 441
Query: 431 LLTHA--TEQRT 440
+++ E+RT
Sbjct: 442 MISKGMVPERRT 453
>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
Length = 529
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 145/338 (42%), Gaps = 54/338 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWE---LVKEI------------DELSNGYVSLAAMSTVMRRL 176
TYN +++ K + G M++ ++KE+ + L +G+ +S MR
Sbjct: 192 TYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVF 251
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF-----------DVLIHGWCKT 225
L +V N + + K + ++L Q+ +VLI+G+CK
Sbjct: 252 GEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKN 311
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
+ + A +M + G P+ ++YT I+ YC++ M ++G P V T
Sbjct: 312 KTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTY 371
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------SKAVRFL----- 334
++ L + + A + +M S D Y+ LI L KAV+ L
Sbjct: 372 NCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFE 431
Query: 335 --------IYNTMISSACVRSEEGN---ALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
YNT++ C EGN AL +R ++E + + TH +K C K R
Sbjct: 432 KGLNPSHVTYNTLMDGYC---REGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGR 488
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
++D +LN EML +G+VP +T++++ EE+ +K
Sbjct: 489 LEDANGLLN---EMLERGLVPNRTTYEIIKEEMMEKGF 523
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 126/276 (45%), Gaps = 31/276 (11%)
Query: 184 LMDTLVK---RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L+ LVK + Y+ +K K I L+ F+++++G CK K + A +++M
Sbjct: 126 LLSGLVKESENGDMEFVYREMIKRK--IELNVISFNIVVNGLCKVGKLNRAGDVIEDMKV 183
Query: 241 HGFSPDGVSYTCFIEHYC---REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
G SP+ ++Y I+ YC R K D LKEM KG P+ +T I++ K +
Sbjct: 184 WGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDEN 243
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFIL--------SKAVR-----------FLIYNT 338
+ A++V+ +M+ + Y+ LI L + A+R + +N
Sbjct: 244 VSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNV 303
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+I+ C A+ L +E+ P+ T+ + C RM+D + N+ M+
Sbjct: 304 LINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNM---MI 360
Query: 399 SKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLT 433
+GI P+ ST+ L L K + A+ ++E+++
Sbjct: 361 DRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVS 396
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/242 (19%), Positives = 97/242 (40%), Gaps = 25/242 (10%)
Query: 193 SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
SV+ + D ++S + D+L+ + + K +A K +GF +S
Sbjct: 66 SVSAIFHAISMSGDSFCVNSILADMLVLAFVRNLKILRGFEAFKRAGDYGFKLSLISCNP 125
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
+ +E + +++ +EM ++ + +VI+ IV++ L K ++ A V E MK
Sbjct: 126 LLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWG 185
Query: 313 CLTDTSFYSSLIFILSKAVRF----------------------LIYNTMISSACVRSEEG 350
+ Y++LI K R + YN +I C
Sbjct: 186 VSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVS 245
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A+++ +++ +P+ T+ + C ++ + + L +M+S + P TH
Sbjct: 246 GAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVA---LRDQMVSSDLEPNVVTHN 302
Query: 411 ML 412
+L
Sbjct: 303 VL 304
>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 451
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 109/236 (46%), Gaps = 19/236 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
D + + ++D L K V AY++F + S + ++V+++GWC +++ A + +K
Sbjct: 158 DLASFNTILDVLCKSKRVEKAYELFRALRGRFSADTVTYNVIVNGWCLIKRTPKALEVLK 217
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM G +P+ +Y ++ + R R+ EM+++ C+ V+T T V+H A
Sbjct: 218 EMVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAG 277
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
+I V+++M + L + Y++ I +L C + NA+ +
Sbjct: 278 EIKRTRNVFDEMIREGVLPSVATYNAFIQVL----------------CKKDSVENAVVMF 321
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+++ +P+ T+ ++ H + G LM+ M ++G P T+ M+
Sbjct: 322 EEMVRKGYEPNVTTYNVLIRGLFHAGKFSRGE---ELMQRMENEGCEPNFQTYNMM 374
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 12/193 (6%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN M++ ++ + WE E+ + N + + +TV+ V + R
Sbjct: 230 TYNTMLQGFFRAGQIRQAWEFFLEMKK-RNCEIDVVTYTTVVH-----GFGVAGEIKRTR 283
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
N ++ + S ++ I CK + A +EM + G+ P+ +Y
Sbjct: 284 NVFDEM------IREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYN 337
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
I F + + ++ M+ +GC+P+ T +++ + ++ +AL ++EKM +
Sbjct: 338 VLIRGLFHAGKFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGTG 397
Query: 312 DCLTDTSFYSSLI 324
DCL + Y+ LI
Sbjct: 398 DCLPNLDTYNILI 410
>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
Length = 799
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 122/287 (42%), Gaps = 23/287 (8%)
Query: 146 FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF- 204
+G+M + EL L+ M+ L+ A + ++ L V+ A +V
Sbjct: 288 YGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMV 347
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
+ L + +F ++ G+C+ A+ EM + G + DGV+YT I CR + +
Sbjct: 348 MHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELK 407
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ + L+EM++KG +T T+++ K ++ EA V+ KM + Y++L
Sbjct: 408 EAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALS 467
Query: 325 FILSKA-------------------VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
L K + YN++I+ C A++ ++E K
Sbjct: 468 DGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLK 527
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
PD T+ + C K + +L++EML KGI P T+ +L
Sbjct: 528 PDVYTYTTIIGALCQSKELDRAH---SLLQEMLDKGIKPTIVTYNVL 571
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/311 (20%), Positives = 133/311 (42%), Gaps = 42/311 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMS--------T 171
TY A++ L ++ + +++E+++ L +GY + M+
Sbjct: 392 TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451
Query: 172 VMRRLDTRAMS--VLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKS 228
V +R+ ++ L D L K+ V A ++ + + L+ ++ LI+G CK
Sbjct: 452 VQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+ A + M +M + G PD +YT I C+ K+ + L+EM +KG KP+++T ++
Sbjct: 512 EQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVL 571
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
M+ + ++ ++ E M + +T+ YN+++ C+
Sbjct: 572 MNGFCMSGRVEGGKRLLEWMLEKNIHPNTT----------------TYNSLMKQYCIEKN 615
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+ ++ + + P+ T+ +K C + MK+ L EM+ KG S+
Sbjct: 616 MKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEA---LYFHSEMIEKGFRLTASS 672
Query: 409 HKMLAEELEKK 419
+ L L KK
Sbjct: 673 YNALIRLLNKK 683
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 100/247 (40%), Gaps = 26/247 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++L+ C + A + EM PD V+Y + YC + L EM
Sbjct: 256 YNILLKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMA 312
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
+G + + + T V+ L Q+ +A++V E M + D + +++++ +
Sbjct: 313 ARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLA 372
Query: 330 --------------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
A + Y +I+ C E A ++ Q++E+ D T+ +
Sbjct: 373 AARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLI 432
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTH 434
C +M + LV N +M+ K + P T+ L++ L K+ + A E + E+ +
Sbjct: 433 DGYCKVGKMTEAFLVHN---KMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSK 489
Query: 435 ATEQRTF 441
E F
Sbjct: 490 GLELNIF 496
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 58/299 (19%), Positives = 109/299 (36%), Gaps = 62/299 (20%)
Query: 85 EDHETDVDKVS-EILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKS 143
ED DVD V+ +L Y K+ EA F Q TY A+ + L K
Sbjct: 417 EDKGLDVDAVTYTVLIDGYCKVGKMTEA---FLVHNKMVQKRVTPNVVTYTALSDGLCKQ 473
Query: 144 KKFGLMWELVKEI------------DELSNGYVSLAAMSTVMRRL----------DTRAM 181
EL+ E+ + L NG + MR + D
Sbjct: 474 GDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTY 533
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ ++ L + + A+ + + D I + ++VL++G+C + + + ++ ++ M +
Sbjct: 534 TTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLE 593
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVD--------------------------------- 267
P+ +Y ++ YC EK+ +
Sbjct: 594 KNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKE 653
Query: 268 --YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
Y EM EKG + + + ++ L K K+ EA +++EKM+ + + Y+ I
Sbjct: 654 ALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYI 712
>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 754
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 122/287 (42%), Gaps = 23/287 (8%)
Query: 146 FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF- 204
+G+M + EL L+ M+ L+ A + ++ L V+ A +V
Sbjct: 288 YGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMV 347
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
+ L + +F ++ G+C+ A+ EM + G + DGV+YT I CR + +
Sbjct: 348 MHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELK 407
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ + L+EM++KG +T T+++ K ++ EA V+ KM + Y++L
Sbjct: 408 EAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALS 467
Query: 325 FILSKA-------------------VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
L K + YN++I+ C A++ ++E K
Sbjct: 468 DGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLK 527
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
PD T+ + C K + +L++EML KGI P T+ +L
Sbjct: 528 PDVYTYTTIIGALCQSKELDRAH---SLLQEMLDKGIKPTIVTYNVL 571
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 137/315 (43%), Gaps = 50/315 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMS--------T 171
TY A++ L ++ + +++E+++ L +GY + M+
Sbjct: 392 TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451
Query: 172 VMRRLDTRAMS--VLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKS 228
V +R+ ++ L D L K+ V A ++ + + L+ ++ LI+G CK
Sbjct: 452 VQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+ A + M +M + G PD +YT I C+ K+ + L+EM +KG KP+++T ++
Sbjct: 512 EQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVL 571
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--FILSKAVRFL--IYNTMISSAC 344
M+ + ++ ++ E M + +T+ Y+SL+ + + K ++ IY M+S
Sbjct: 572 MNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEV 631
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
V P+ T+ +K C + MK+ L EM+ KG
Sbjct: 632 V--------------------PNENTYNILIKGHCKARNMKEA---LYFHSEMIEKGFRL 668
Query: 405 QESTHKMLAEELEKK 419
S++ L L KK
Sbjct: 669 TASSYNALIRLLNKK 683
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 100/247 (40%), Gaps = 26/247 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++L+ C + A + EM PD V+Y + YC + L EM
Sbjct: 256 YNILLKALCTAGRIKDAHQLFDEMAS---PPDVVTYGIMVHGYCTLSELETAIKLLSEMA 312
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
+G + + + T V+ L Q+ +A++V E M + D + +++++ +
Sbjct: 313 ARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLA 372
Query: 330 --------------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
A + Y +I+ C E A ++ Q++E+ D T+ +
Sbjct: 373 AARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLI 432
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTH 434
C +M + LV N +M+ K + P T+ L++ L K+ + A E + E+ +
Sbjct: 433 DGYCKVGKMTEAFLVHN---KMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSK 489
Query: 435 ATEQRTF 441
E F
Sbjct: 490 GLELNIF 496
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 58/299 (19%), Positives = 109/299 (36%), Gaps = 62/299 (20%)
Query: 85 EDHETDVDKVS-EILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKS 143
ED DVD V+ +L Y K+ EA F Q TY A+ + L K
Sbjct: 417 EDKGLDVDAVTYTVLIDGYCKVGKMTEA---FLVHNKMVQKRVTPNVVTYTALSDGLCKQ 473
Query: 144 KKFGLMWELVKEI------------DELSNGYVSLAAMSTVMRRL----------DTRAM 181
EL+ E+ + L NG + MR + D
Sbjct: 474 GDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTY 533
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ ++ L + + A+ + + D I + ++VL++G+C + + + ++ ++ M +
Sbjct: 534 TTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLE 593
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVD--------------------------------- 267
P+ +Y ++ YC EK+ +
Sbjct: 594 KNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKE 653
Query: 268 --YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
Y EM EKG + + + ++ L K K+ EA +++EKM+ + + Y+ I
Sbjct: 654 ALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYI 712
>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 418
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 119/271 (43%), Gaps = 31/271 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L AM + D SVL++ L K + +
Sbjct: 164 KWGLRPSVV-SFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKM 222
Query: 195 AHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A ++F + + + + F LI G CKT D A + KEM + GFSPD ++Y
Sbjct: 223 NDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTL 282
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I C++ D ++ + EM KG KP IT T ++ K + AL ++M ++
Sbjct: 283 IYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENI 342
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
D Y++L IS C + +A K+ +++ KPD T+
Sbjct: 343 RLDDVAYTAL----------------ISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTM 386
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ C K +K G L++EM G VP
Sbjct: 387 IINEFCKKGDVKTGS---KLLKEMQRDGHVP 414
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 141/336 (41%), Gaps = 49/336 (14%)
Query: 110 EALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAA 168
+AL+CF T + + +T ++E K K F L+W KEI L GY SL
Sbjct: 84 DALECFRLT---REHKFWVPFDTCRKVLEHFMKLKYFKLVWGFYKEI--LECGYPASLYF 138
Query: 169 MSTVMRRL----DTRAMSVLMD---------TLVKRNSVAHAYKVFLKFKDCISLSSQI- 214
+ +M R + R + D ++V N++ + Y + L S +
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 198
Query: 215 ----------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
+ VLI+G CK K + A + EM +G P+GV++T I+ +C+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSID 258
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
T KEM +G P +IT +++ L K + +A + ++M D
Sbjct: 259 LAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK------- 311
Query: 325 FILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
+ Y T+I +C + AL R+++ +++ + D + + C + +
Sbjct: 312 ---------ITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQS 362
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
D ++REMLS G+ P T+ M+ E KK
Sbjct: 363 VDAE---KMLREMLSVGLKPDNGTYTMIINEFCKKG 395
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 14/154 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K +L+ E MS + D + L+D K
Sbjct: 278 TYNTLIYGLCKKGDLKQAQDLIDE-------------MSMKGLKPDKITYTTLIDGSCKE 324
Query: 192 NSVAHA-YKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A Y K+ I L + LI G C+ +S A+K ++EM G PD +Y
Sbjct: 325 GDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTY 384
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
T I +C++ D + LKEMQ G P V+T
Sbjct: 385 TMIINEFCKKGDVKTGSKLLKEMQRDGHVPCVVT 418
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/354 (22%), Positives = 156/354 (44%), Gaps = 47/354 (13%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELV-KEI------------DELSNGYVSLAAMS 170
G+M +YNA+++++ + +K + E V +E+ + L G+ + +
Sbjct: 161 NGFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLE 220
Query: 171 TVMRRLDTRAMSVLMDTLVKRNSVAHAY----KVFLKFKDCISLSSQ-------IFDVLI 219
+R + + + +V N+V AY ++ FK S+ + ++++I
Sbjct: 221 MGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVI 280
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
+G C+ + + + EM + GF+PDGV+Y + YC+ +F + EM G
Sbjct: 281 NGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLP 340
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVR- 332
P V+T T +++ + KA + A++ +++M + Y+SLI S+ A R
Sbjct: 341 PDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRI 400
Query: 333 ------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
+ YN +++ CV A+ L + +E PD +++ + C
Sbjct: 401 WDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCR 460
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLT 433
+ + D +N EM+ KG+ P T+ L + L E++ L A + E+L
Sbjct: 461 YQEL-DRAFQMN--AEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLN 511
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 107/257 (41%), Gaps = 51/257 (19%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L++G+CK A EM ++G PD V+YT I C+ + + +M
Sbjct: 311 YNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMH 370
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILS 328
+G +P+ +T T +++ + + EA +++++M Y++L+ +
Sbjct: 371 VRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRME 430
Query: 329 KAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+A+ L Y+T+I+ C E A ++ ++ E PD T++ +
Sbjct: 431 EAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLI 490
Query: 376 KMCCHKKRM------------------------------KDGML--VLNLMREMLSKGIV 403
+ C ++R+ K+G L LNL EM+ KG +
Sbjct: 491 QGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFL 550
Query: 404 PQESTHKMLAEELEKKS 420
P T+ +L L K++
Sbjct: 551 PDTVTYNVLINGLNKQA 567
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 13/218 (5%)
Query: 206 DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
D I+ SS LI G C+ R+ + A +EM PD +YT I YC+E D +
Sbjct: 482 DAITYSS-----LIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNE 536
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
EM +KG P +T ++++ L K + EA ++ K+ D+ + + Y +LI
Sbjct: 537 ALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIE 596
Query: 326 ILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
S + F +I C++ A ++ + + + + KP+ + + C +
Sbjct: 597 SCSD-IEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHC-----R 650
Query: 386 DGML--VLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
DG + L +EM+ G +P T L + L + +
Sbjct: 651 DGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGM 688
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 22/210 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L++G C + + + A ++ M G SPD VSY+ I +CR ++ + EM
Sbjct: 416 YNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMV 475
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
EKG P IT + ++ L + +++ EA ++++M + L D Y+SL
Sbjct: 476 EKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSL----------- 524
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
I+ C + AL L ++ + PD T+ + + R ++ L+
Sbjct: 525 -----INGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAK---RLL 576
Query: 395 REMLSKGIVPQESTHKMLAE---ELEKKSL 421
++ +P T+ L E ++E KS+
Sbjct: 577 LKLFYDESIPNGITYDTLIESCSDIEFKSV 606
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 16/132 (12%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF----------------KDCISLSSQIFDVLIH 220
DT +VL++ L K+ A ++ LK + C + + LI
Sbjct: 552 DTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIK 611
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G+C + A + + M + P+ Y I +CR+ + K KEM + G P
Sbjct: 612 GFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIP 671
Query: 281 SVITCTIVMHAL 292
+T ++ AL
Sbjct: 672 HTVTIIALVKAL 683
>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Brachypodium distachyon]
Length = 554
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 107/263 (40%), Gaps = 22/263 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
+TR +VLM V+ + A KVF + + + + F+ LI G C+ R D K
Sbjct: 185 ETRLFNVLMRDFVRLGELVSARKVFDEMRRSVQPTVVTFNTLISGMCRARDLDAVDGLYK 244
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM G PD +Y I+ +CR EM++ G P+ + T ++ A K
Sbjct: 245 EMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEG 304
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYN 337
+ + +Y+ M+ + D Y++L+ L +A + Y
Sbjct: 305 NVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYT 364
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
T+I C + A+ ++QK+ E D T+ + R D VL REM
Sbjct: 365 TLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVL---REM 421
Query: 398 LSKGIVPQESTHKMLAEELEKKS 420
+ + P +T+ M+ + +K
Sbjct: 422 MEAALEPDNTTYTMVIDAFCRKG 444
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/301 (21%), Positives = 129/301 (42%), Gaps = 36/301 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T+N ++ + +++ + L KE MS V + D L+ +
Sbjct: 222 TFNTLISGMCRARDLDAVDGLYKE-------------MSDVGVKPDVYTYGALIKGFCRT 268
Query: 192 NSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ +A K+F + +D ++ ++ +F LI CK + ++M G PD V+Y
Sbjct: 269 GRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAY 328
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ CR ++ + + ++EM+ G KP +T T ++ K ++ A+ + +KM
Sbjct: 329 NALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAE 388
Query: 311 DDCLTDTSFYSSLIFILSKAVRFL-------------------IYNTMISSACVRSEEGN 351
+ D Y++LI LSKA R + Y +I + C + +
Sbjct: 389 KEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKT 448
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
KL ++++ KP T+ + C +MK+ + L+ ML+ G+ P + T+ +
Sbjct: 449 GFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADM---LLHAMLNIGVSPDDITYNI 505
Query: 412 L 412
L
Sbjct: 506 L 506
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 14/201 (6%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G M YNA+V L +++ +V+E M + D + L
Sbjct: 320 GVMPDLVAYNALVNGLCRARNLKAAESIVEE-------------MKNAGLKPDKVTYTTL 366
Query: 185 MDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D K + A + K + +SL + LI G K + A++ ++EM +
Sbjct: 367 IDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAAL 426
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD +YT I+ +CR+ D + LKEMQ KG KP V+T ++M+ L K Q+ A
Sbjct: 427 EPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADM 486
Query: 304 VYEKMKSDDCLTDTSFYSSLI 324
+ M + D Y+ L+
Sbjct: 487 LLHAMLNIGVSPDDITYNILL 507
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 71/166 (42%), Gaps = 17/166 (10%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY A++ L K+ + +++E+ E AA+ D ++++D ++
Sbjct: 397 TYTALISGLSKAGRPVDAERVLREMME--------AALEP-----DNTTYTMVIDAFCRK 443
Query: 192 NSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V +K+ + ++ + ++V+++G CK + A + M G SPD ++Y
Sbjct: 444 GDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITY 503
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
++ C+ KV + + KG P T ++ L K K
Sbjct: 504 NILLDGQCKHG---KVANSEELESSKGMVPDFAVYTSLISELAKKK 546
>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 533
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 141/331 (42%), Gaps = 37/331 (11%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F +K G T N +V+AL K ++++ EI AM V +
Sbjct: 176 FKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEI----------PAMGLVPNLV 225
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
+ ++ V R + A +V + D I + VL+ G+CK + A M
Sbjct: 226 ---TYTTILGGYVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATVM 282
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+M ++ P+ V+Y I C+EK + EM ++ P C V+ AL +
Sbjct: 283 DDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDALCED 342
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR------------------FLIYN 337
++ EA ++ KM ++C+ D + S+LI L K R L YN
Sbjct: 343 HKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEARKLFDEFDKGSIPSLLTYN 402
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
T+I+ C + E A +L + E CKP+ T+ ++ +K+G+ VL EM
Sbjct: 403 TLIAGMCEKGELTEAGRLWDDMFERKCKPNAFTYNVLIEGLSKNGNVKEGVRVL---EEM 459
Query: 398 LSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
L G P ++T +L E L+K LG ++ I
Sbjct: 460 LESGCFPNKTTFLILFEGLQK--LGKEEDAI 488
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 108/279 (38%), Gaps = 41/279 (14%)
Query: 59 VIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEIL-RKRYPSPDKVVEALKCFC- 116
++P+L ++ L + D E+ + E+L R YP + +C
Sbjct: 220 LVPNLVTYTTIL--------GGYVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCK 271
Query: 117 ---FTWAKTQTGYMHTPE------TYNAMVEALGKSKKFGLMWELVKE------------ 155
F+ A T M E TY M+ AL K KK G + E
Sbjct: 272 LGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLDRSFMPDSSL 331
Query: 156 ----IDELSNGYVSLAAMSTVMRRL------DTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205
ID L + A + L D +S L+ L K V+ A K+F +F
Sbjct: 332 CCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEARKLFDEFD 391
Query: 206 DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
S ++ LI G C+ + A + +MF+ P+ +Y IE + + ++
Sbjct: 392 KGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMFERKCKPNAFTYNVLIEGLSKNGNVKE 451
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
L+EM E GC P+ T I+ L+K + +A+K+
Sbjct: 452 GVRVLEEMLESGCFPNKTTFLILFEGLQKLGKEEDAIKI 490
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 63/332 (18%), Positives = 128/332 (38%), Gaps = 77/332 (23%)
Query: 111 ALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMS 170
AL+ F + K+ G+ H +TY++++ L +++ F + L+ + L N Y +
Sbjct: 63 ALQIFLYA-GKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMAD---LRNSYPPIKCGE 118
Query: 171 TVMRRLDTRAMSVLMDTLVKRNSVAHAY----KVFLKFKD-CISLSSQIFDVLIHGWCKT 225
L L++ +A Y ++FL+ D + S + + L++ +
Sbjct: 119 N------------LFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQN 166
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
++ D MF++ G++ P++ TC
Sbjct: 167 QRFDLVHA----MFKNSKESFGIT------------------------------PNIFTC 192
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
+++ AL K I A KV +++ + + + Y T++
Sbjct: 193 NLLVKALCKKNDIESAYKVLDEIPA----------------MGLVPNLVTYTTILGGYVA 236
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
R + +A ++ +++ + PD T+ + C R + V M +M I P
Sbjct: 237 RGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATV---MDDMEKNEIEPN 293
Query: 406 ESTHKMLAEEL--EKKSLGNAKERIDELLTHA 435
E T+ ++ L EKKS G A+ DE+L +
Sbjct: 294 EVTYGVMIRALCKEKKS-GEARNMFDEMLDRS 324
>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16420, mitochondrial; Flags: Precursor
gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 535
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 138/322 (42%), Gaps = 37/322 (11%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV-SLAAMSTVMRR 175
F +K G T N +V+AL K ++++ EI S G V +L +T++
Sbjct: 178 FKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIP--SMGLVPNLVTYTTIL-- 233
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKA 234
V R + A +V + D + + VL+ G+CK + A
Sbjct: 234 ----------GGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATV 283
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
M +M ++ P+ V+Y I C+EK + EM E+ P C V+ AL +
Sbjct: 284 MDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCE 343
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR------------------FLIY 336
++ EA ++ KM ++C+ D + S+LI L K R L Y
Sbjct: 344 DHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSIPSLLTY 403
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT+I+ C + E A +L + E CKP+ T+ ++ +K+G+ VL E
Sbjct: 404 NTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVL---EE 460
Query: 397 MLSKGIVPQESTHKMLAEELEK 418
ML G P ++T +L E L+K
Sbjct: 461 MLEIGCFPNKTTFLILFEGLQK 482
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 108/279 (38%), Gaps = 41/279 (14%)
Query: 59 VIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEIL-RKRYPSPDKVVEALKCFC- 116
++P+L ++ L + D E+ + E+L R YP + +C
Sbjct: 222 LVPNLVTYTTIL--------GGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCK 273
Query: 117 ---FTWAKTQTGYMHTPE------TYNAMVEALGKSKKFGLMWELVKE------------ 155
F+ A T M E TY M+ AL K KK G + E
Sbjct: 274 LGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSL 333
Query: 156 ----IDELSNGYVSLAAMSTVMRRL------DTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205
ID L + A + L D +S L+ L K V A K+F +F+
Sbjct: 334 CCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFE 393
Query: 206 DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
S ++ LI G C+ + A + +M++ P+ +Y IE + + ++
Sbjct: 394 KGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKE 453
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
L+EM E GC P+ T I+ L+K + +A+K+
Sbjct: 454 GVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKI 492
>gi|357457245|ref|XP_003598903.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487951|gb|AES69154.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 767
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 99/429 (23%), Positives = 171/429 (39%), Gaps = 63/429 (14%)
Query: 64 ASWVESLKLNEQSRISSHALSEDHET-DVDKVSEILRKRYPSPDKVVEALKCFC------ 116
A++ SL+L+ +R A +++ V+E+ + R +P V E LK
Sbjct: 79 ATFSASLRLSPIARFILDAFRKNNNNWGPPVVTELNKLRRVTPTLVAEVLKVQTNPTLAF 138
Query: 117 --FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR 174
F W + Q GY H +YNA L ++ F +L + +D + G ++
Sbjct: 139 KFFHWVEKQKGYHHNFASYNAFTYCLNRANHFRAADQLPELMD--AQGKPPSEKQFEILI 196
Query: 175 RLDT---RAMSV----------------------LMDTLVKRNSVAHAYKVFLKFK-DCI 208
R+ + R + V +MD LVK + A V+ F+ D +
Sbjct: 197 RMHSDAGRGLRVYHVYDKMRNKFGVKPRVFLYNRIMDALVKTGHLDLALSVYNDFREDGL 256
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
S F +LI G CK K D + + M + PD +YT + +E +
Sbjct: 257 VEESVTFMILIKGLCKGGKIDEMLEVLGRMREKLCKPDVFAYTALVRIMVKEGNLDGCLR 316
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--FI 326
KEM+ P V+ ++ L K ++ E +++++MKS L D + Y SL+ F+
Sbjct: 317 VWKEMKRDRVDPDVMAYGTIIGGLAKGGRVSEGYELFKEMKSKGHLIDRAIYGSLVESFV 376
Query: 327 LSKAVRFL-----------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
V +YN +I C ++ A KL Q ++ +PD
Sbjct: 377 AGNKVGLAFDLLKDLVSSGYRADLGMYNNLIEGLCNLNKVEKAYKLFQVTIQEGLEPDFL 436
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
+ L KRM++ ++L M+++ G + K + +EKK E
Sbjct: 437 SVKPLLLAYAEAKRMEEFFMLLEKMKKL---GFPVIDDLSKFFSHLVEKK----GPEMAL 489
Query: 430 ELLTHATEQ 438
E+ TH E+
Sbjct: 490 EIFTHLKEK 498
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 110/262 (41%), Gaps = 29/262 (11%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ-IFDVLIHGWCKTRKSDYAQKAM 235
D A ++ L K V+ Y++F + K L + I+ L+ + K A +
Sbjct: 329 DVMAYGTIIGGLAKGGRVSEGYELFKEMKSKGHLIDRAIYGSLVESFVAGNKVGLAFDLL 388
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCR----EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
K++ G+ D Y IE C EK ++ T++E G +P ++ ++ A
Sbjct: 389 KDLVSSGYRADLGMYNNLIEGLCNLNKVEKAYKLFQVTIQE----GLEPDFLSVKPLLLA 444
Query: 292 LEKAKQIYEALKVYEKMK--SDDCLTDTS-FYSSL-----------IFILSKAVRFL--- 334
+AK++ E + EKMK + D S F+S L IF K ++
Sbjct: 445 YAEAKRMEEFFMLLEKMKKLGFPVIDDLSKFFSHLVEKKGPEMALEIFTHLKEKSYVSVE 504
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
IYN + S + + AL L +I+ +PD T+ ++ ++K+ N +
Sbjct: 505 IYNIFMESLHLSGKVEKALSLFDEIKGSDLEPDSSTYNIAILCLVDHGQIKEACECHNKI 564
Query: 395 REMLSKGIVPQESTHKMLAEEL 416
EM S +P + + LA+ L
Sbjct: 565 IEMSS---IPSVAAYNCLAKGL 583
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 14/157 (8%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS-PDGVSYTCFIEHYCREKDFRKVDYT 269
S ++ L G C + D A +++ + S P Y I C+ K+
Sbjct: 572 SVAAYNCLAKGLCNIGEIDEAMLLVRDCLGNVTSGPMEFKYCLTIIRMCKSNVAEKLIDV 631
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT--DTSFYSSLI--- 324
L EM ++GC + C+ ++ + K I EA KV+ ++ LT DT Y L+
Sbjct: 632 LNEMMQEGCSLDNVVCSAIISGMCKYGTIEEARKVFSILRERKLLTESDTIVYDELLIDH 691
Query: 325 -------FILSKAVRFLIYNTMISSAC-VRSEEGNAL 353
++S F + + + S C + SEE NAL
Sbjct: 692 MKKKTADLVISGLKFFGLESKLKSKGCKLPSEEDNAL 728
>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
Length = 528
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 104/218 (47%), Gaps = 23/218 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I G+C+ R+ D A M++M G PD ++YT I +C+ +D + L E+
Sbjct: 147 YNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVT 206
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+G P ++T + V+ L KA ++ +A+ ++E+M S A +
Sbjct: 207 RRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM-------------------SCAPTAI 247
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN++I C + A++L K+ +D C PD T+ + C R+ D L
Sbjct: 248 TYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDD---AYELF 304
Query: 395 REMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
++M++ + P T L + L + + +A E ++E+
Sbjct: 305 QQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEI 342
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 115/301 (38%), Gaps = 45/301 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYV-SLAAMSTVMRRL----------DTRA 180
TY A++ KS+ G EL+ E+ G+ + STV+ L D
Sbjct: 181 TYTALIGGFCKSRDVGRGLELLGEVTR--RGFTPDIVTYSTVIDGLCKAGRLRDAVDIFE 238
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD-----------VLIHGWCKTRKSD 229
T + NS+ Y + I L ++ D L+ +CK + D
Sbjct: 239 EMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLD 298
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
A + ++M + SPD V++T ++ C E L+E+ +GC P++ T V+
Sbjct: 299 DAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVV 358
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE 349
KA Q+ +A ++ +S + +T + YN +++ C
Sbjct: 359 DGYCKANQVRKAEELVADFRSRGFVPNT----------------VTYNILVAGCCRAGRT 402
Query: 350 GNALKLRQKI--EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
AL+ ++ E C +A L C R D + EM+ +G VP +
Sbjct: 403 DQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDD---AVQFYEEMIQRGYVPAAA 459
Query: 408 T 408
T
Sbjct: 460 T 460
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 97/235 (41%), Gaps = 25/235 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+V++ L + + HA V+ + D + L+HG K R+ A + ++EM
Sbjct: 9 NVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSA 68
Query: 242 GFSPDGVSYTCFIEHYC---REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
PD + T ++ C R D R++ ++EM +G + IT + ++ L K +++
Sbjct: 69 RHVPDNTTLTVVVQSLCLGDRVDDAREL---VEEMLHRGMAANAITYSALVDGLCKCERL 125
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTM 339
EA+ + E M C Y+S+I +A R + Y +
Sbjct: 126 DEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTAL 185
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
I C + G L+L ++ PD T++ + C R++D + + M
Sbjct: 186 IGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM 240
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 83/199 (41%), Gaps = 24/199 (12%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
T+ G T TYN +V+ K+ + ELV D S G+V +T
Sbjct: 343 TRRGCPPTIYTYNCVVDGYCKANQVRKAEELVA--DFRSRGFVP-----------NTVTY 389
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD----CISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
++L+ + A + + C + S ++ +++ C+ ++D A + +E
Sbjct: 390 NILVAGCCRAGRTDQALQYLDQLNSEGGPCPT-SVAMYAIILDALCRDGRTDDAVQFYEE 448
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA------ 291
M Q G+ P ++ + C+ ++ L+EM + G P TC V+ A
Sbjct: 449 MIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGM 508
Query: 292 LEKAKQIYEALKVYEKMKS 310
++KA ++ L++Y S
Sbjct: 509 IQKADELASELRLYTDKSS 527
>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Cucumis sativus]
Length = 749
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 114/282 (40%), Gaps = 33/282 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T N MV AL K +KF N L+ M D + L++ +
Sbjct: 259 TLNIMVNALCKDRKF-------------ENVMFFLSDMEGKGVFADIVTYNTLINAYCRE 305
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A+++ F + ++ +++G CK K D A+ + EM Q G +P+ +Y
Sbjct: 306 GLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATY 365
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ CR + + EM +G P +++ + ++ L + +Y+AL + +M+
Sbjct: 366 NTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMER 425
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ D +IY +I C +ALK+R ++ C D T
Sbjct: 426 SGIVPDN----------------VIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVT 469
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ L C KK D ++ N EM+ +G+VP T L
Sbjct: 470 YNTFLNGLCKKKMFADADMLFN---EMVERGMVPDFYTFTTL 508
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 97/211 (45%), Gaps = 22/211 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G+CK + A++ +M + PD +SY + +C + +M
Sbjct: 540 YNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQML 599
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
EKG +P+++TC ++ ++ + +A + KM S+ + D+ Y++LI
Sbjct: 600 EKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLE 659
Query: 325 --FIL-----SKAVRFLI--YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
FIL + ++F I YN +++ C + A ++ +K+ E PD T++ +
Sbjct: 660 KAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLI 719
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
+ MK+ EML +G+VP +
Sbjct: 720 NGHVSQDNMKEA---FRFHDEMLQRGLVPDD 747
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 108/261 (41%), Gaps = 29/261 (11%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVL-----IHGWCKTRKSDYA 231
D ++L+D + +++ A LK +D + DV+ ++G CK + A
Sbjct: 431 DNVIYTILIDGFCRNGALSDA----LKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADA 486
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
EM + G PD ++T I YC++ + K + M KP +T ++
Sbjct: 487 DMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDG 546
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN 351
KA ++ A ++++ M D + D + Y T+++ C
Sbjct: 547 FCKAGEMGRAKELWDDMIRKDIIPDH----------------ISYGTVLNGFCSSGLLPE 590
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
AL L ++ E +P+ T +K C M L+ +M+S GI+P ++
Sbjct: 591 ALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLS---KMISNGIIPDSFSYNT 647
Query: 412 LAEE-LEKKSLGNAKERIDEL 431
L + L++ +L A I+E+
Sbjct: 648 LIDGYLKEANLEKAFILINEM 668
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/105 (20%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D+ + + L+D +K ++ A+ + + K + + ++++++G+C K A++ +
Sbjct: 641 DSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVL 700
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
++M + G +PDG +Y+ I + + + ++ EM ++G P
Sbjct: 701 RKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVP 745
>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
Length = 550
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 134/311 (43%), Gaps = 36/311 (11%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
TG + TYN+M+ K +EL E+ E A + V +
Sbjct: 250 TGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERG------VACNVV-------TYNT 296
Query: 184 LMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ L + V A ++ + K D +S + ++ LI G+C D A +M G
Sbjct: 297 LIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSG 356
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
SP +Y I + K+ V ++EM+ +G PS +T TI+M AL ++ I +A
Sbjct: 357 QSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAF 416
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFIL---------SKAVRFL----------IYNTMISSA 343
++Y M+ + D Y LI L SK + L IYNTMI
Sbjct: 417 QIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGY 476
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C AL+L +++ E+ P+ ++ ++ + C ++ + + L+++M+ G+
Sbjct: 477 CKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEV---LLKDMIELGLK 533
Query: 404 PQESTHKMLAE 414
P S M+++
Sbjct: 534 PSISIWNMISK 544
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 105/248 (42%), Gaps = 22/248 (8%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ L+K N A++VF + K + L F ++I G C+ D + + +M + G
Sbjct: 123 LLILLIKSNFFEKAWRVFNETKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGL 182
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
SP+ V YT I+ C+ D + +M E + T T++++ K + ++
Sbjct: 183 SPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIE 242
Query: 304 VYEKMKSDDCLTDTSFYSSLI------------FILSKAVR-------FLIYNTMISSAC 344
+YEKMK + + Y+S+I F L +R + YNT+I C
Sbjct: 243 LYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLC 302
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
A +L +++ D P+ ++ + C + + N M+ S G P
Sbjct: 303 QERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMK---SSGQSP 359
Query: 405 QESTHKML 412
+T+ +L
Sbjct: 360 SLATYNIL 367
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/272 (20%), Positives = 112/272 (41%), Gaps = 20/272 (7%)
Query: 146 FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205
FG+M + E+ L G+ L M + + + L+D K + ++F K
Sbjct: 154 FGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMG 213
Query: 206 DCISLSSQ-IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
+ +++Q + VLI+G+ K + ++M G P+ +Y I C +
Sbjct: 214 ELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLN 273
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
EM+E+G +V+T ++ L + +++ EA ++ +MK D
Sbjct: 274 NAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGL----------- 322
Query: 325 FILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
+ + YNT+I C A L +++ P T+ +
Sbjct: 323 -----SPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYN---ILIAGFSEA 374
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
K+ V +++REM ++G+ P + T+ +L + L
Sbjct: 375 KNSAGVTDMVREMEARGLSPSKVTYTILMDAL 406
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 5/197 (2%)
Query: 90 DVDKVSEI---LRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKF 146
++DK S + ++ SP + F+ AK G A + K
Sbjct: 341 NLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYT 400
Query: 147 GLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD 206
LM LV+ D + + ++M D VL+ L + A K+F +
Sbjct: 401 ILMDALVRS-DNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDE 459
Query: 207 C-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
+ + I++ +I+G+CK S A + +KEM ++G P+ SY I C+++ + +
Sbjct: 460 MHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTE 519
Query: 266 VDYTLKEMQEKGCKPSV 282
+ LK+M E G KPS+
Sbjct: 520 AEVLLKDMIELGLKPSI 536
>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 665
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 109/242 (45%), Gaps = 22/242 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+VL++ + K + A KV ++ K C + ++V+I+G C+ + D A++ + +
Sbjct: 176 TVLLEAVCKSSGFGQAMKVLDEMRAKGCTP-NIVTYNVIINGMCREDRVDDARQILNRLS 234
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+GF PD VSYT ++ C K + V+ EM E C P+ +T +++ + +
Sbjct: 235 SYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVE 294
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
A++V ++M C +T+ + N +I+S C + +A + +
Sbjct: 295 RAIEVLDRMSEHGCTANTT----------------LCNIVINSICKQGRVDDAFEFLNNM 338
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
C PD ++ LK C R +D +LN EM+ K P E T L +K
Sbjct: 339 GSYGCSPDTISYTTVLKGLCRAGRWEDAKELLN---EMVRKNCPPNEVTFNTFICILCQK 395
Query: 420 SL 421
L
Sbjct: 396 GL 397
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 98/226 (43%), Gaps = 23/226 (10%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ + +++I+ CK + D A + + M +G SPD +SYT ++ CR + L
Sbjct: 311 NTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELL 370
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
EM K C P+ +T + L + I +A+ + E+M C +
Sbjct: 371 NEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGC----------------S 414
Query: 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
V + YN +++ CV+ +AL+L + C+P+ T+ L CH +R+
Sbjct: 415 VGIVTYNALVNGFCVQGRVDSALELFNSL---PCEPNTITYTTLLTGLCHAERLDAAA-- 469
Query: 391 LNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
L+ EM+ T +L +K + A E + +++ H
Sbjct: 470 -ELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHG 514
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 96/208 (46%), Gaps = 22/208 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ L+ G C + D A + + EM Q+ + V++ + +C++ + +++M
Sbjct: 452 YTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMM 511
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
E GC P++IT ++ + + EAL++ + S DT YSS++ +LS+ R
Sbjct: 512 EHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIE 571
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++YN ++S+ C R E A+ + +SC P+ T+ +
Sbjct: 572 EAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILI 631
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIV 403
+ + +K+ VL+ E+ S+G++
Sbjct: 632 EGLAREGLLKEARYVLS---ELCSRGVL 656
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 106/235 (45%), Gaps = 23/235 (9%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LI G C + A + +M + P V+YT +E C+ F + L EM+ KG
Sbjct: 143 LIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKG 202
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF---- 333
C P+++T ++++ + + ++ +A ++ ++ S DT Y++++ L A R+
Sbjct: 203 CTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVE 262
Query: 334 LIYNTMISSACVRSE-----------EGN----ALKLRQKIEEDSCKPDCETHARSLKMC 378
+++ M+ + CV +E G A+++ ++ E C + +
Sbjct: 263 VLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSI 322
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL-GNAKERIDELL 432
C + R+ D LN M S G P ++ + + L + +AKE ++E++
Sbjct: 323 CKQGRVDDAFEFLN---NMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMV 374
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 20/182 (10%)
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-----A 330
+G P V CT ++ L + + +A +V + D Y++L+ + A
Sbjct: 64 RGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDA 123
Query: 331 VRFLI-----------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC 379
R LI Y +I C R G+AL L + C+P T+ L+ C
Sbjct: 124 ARRLIASMPVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVC 183
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHATEQ 438
M VL+ EM +KG P T+ ++ + + + +A++ ++ L ++ +
Sbjct: 184 KSSGFGQAMKVLD---EMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQP 240
Query: 439 RT 440
T
Sbjct: 241 DT 242
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 152/358 (42%), Gaps = 76/358 (21%)
Query: 130 PET--YNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMSTVMRR 175
P+T YN +V L +S K+ ++++++ E L +G+ ++ M R
Sbjct: 230 PDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERL 289
Query: 176 LDTRA----------MSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCK 224
L+ + L+ + + +A AY+V FK IS ++ L+ G CK
Sbjct: 290 LEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCK 349
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
K + A + ++ M + +PD V+Y+ + C+ L+ M E+GC+P+++T
Sbjct: 350 AGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVT 409
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----FLI----- 335
++ KA ++ E KV E MK C D YS+LI KA R F I
Sbjct: 410 FNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGISP 469
Query: 336 ----YNTMISSACVRS----------------------------------EEGN-ALKLR 356
Y++M+ C E G+ ALK+
Sbjct: 470 DKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKML 529
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
Q + E C+P+ T++ + C KR++D + VL++ ML KG VP +T+ L +
Sbjct: 530 QVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDV---MLEKGCVPDVATYTSLID 584
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 91/215 (42%), Gaps = 22/215 (10%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
+LIHG C+ ++ D A + + EM Q PD Y C I C+ LK M E+
Sbjct: 97 ILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLER 156
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--- 333
C P VIT T ++ + + EA K+ EKMK DT Y++L+ L K +
Sbjct: 157 SCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEV 216
Query: 334 ----------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
YNT+++ C + A K+ +K+ E C PD T+ +
Sbjct: 217 SKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDG 276
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C +M + L+ +M+ + P T+ L
Sbjct: 277 FCKVSKMDEAE---RLLEDMVGRRCAPTVITYTTL 308
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 114/267 (42%), Gaps = 23/267 (8%)
Query: 190 KRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
+ N++ A K+ K K+ ++ + ++ L++G CK + + K ++EM + G PD
Sbjct: 174 QTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTF 233
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
SY + C + + L++M EK C P V+T +M K ++ EA ++ E M
Sbjct: 234 SYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDM 293
Query: 309 KSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRSEE 349
C Y++LI S+A R + YN ++ C +
Sbjct: 294 VGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKL 353
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
A +L + + E C PD T++ + C ++ D L+L + ML +G P T
Sbjct: 354 EEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEM---MLERGCQPNLVTF 410
Query: 410 KMLAEELEKKSLGNAKERIDELLTHAT 436
+ + K + ++ EL+ +
Sbjct: 411 NTMIDGFCKAGKVDEGHKVLELMKEVS 437
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 103/241 (42%), Gaps = 24/241 (9%)
Query: 203 KFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
+F D S+ + LI G+ + S + EM FSPD +++ ++ YC+ D
Sbjct: 15 RFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGD 74
Query: 263 FRKVDYTLKEMQEKG-CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
D L + K C P+ T I++H L + ++I EA ++ ++M DC D +
Sbjct: 75 L---DRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAA--- 128
Query: 322 SLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
+YN +I+ C + A + + + E SC PD T+ + CC
Sbjct: 129 -------------VYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQT 175
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATEQRT 440
+ + LM +M G+ P + L L K++ L + ++E++ E T
Sbjct: 176 NALDEAR---KLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDT 232
Query: 441 F 441
F
Sbjct: 233 F 233
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 103/257 (40%), Gaps = 33/257 (12%)
Query: 132 TYNAMVEALGKSKKFG---LMWELVKEID---------ELSNGYVSLAAMSTVMRRL--- 176
T+N M++ K+ K + EL+KE+ L +GY M L
Sbjct: 409 TFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGIS 468
Query: 177 -DTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D + S +++ L V A +V L K +S + ++I G C + D A K
Sbjct: 469 PDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKM 528
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
++ M + G P+ +Y+ I C+ K L M EKGC P V T T ++ K
Sbjct: 529 LQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCK 588
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
++ A + ++ M+ C D L YN +IS C A++
Sbjct: 589 INKMDAAYQCFKTMRDSGCEPDK----------------LAYNILISGFCQSGNVEKAIE 632
Query: 355 LRQKIEEDSCKPDCETH 371
+ Q + E C PD T+
Sbjct: 633 VMQLMLEKGCNPDAATY 649
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 56/110 (50%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +LI+G CKT++ + A + M + G PD +YT I+ +C+ K M+
Sbjct: 544 YSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMR 603
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ GC+P + I++ ++ + +A++V + M C D + Y SL+
Sbjct: 604 DSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLM 653
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 115/306 (37%), Gaps = 52/306 (16%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMSTVMRRLDTR 179
TYN +++ L K+ K EL++ + E L NG L + L+
Sbjct: 339 TYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMM 398
Query: 180 ----------AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRK 227
+ ++D K V +KV K+ +S + + + LI G+CK +
Sbjct: 399 LERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKE-VSCTPDVVTYSTLIDGYCKANR 457
Query: 228 SDYAQKAMKEMFQ-HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
M++ F G SPD SY+ +E C + + M ++GC P+
Sbjct: 458 -------MQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYA 510
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR 346
+++ L ++ EALK+ + M C + YS LI L K R
Sbjct: 511 LIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRV------------- 557
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
+A+ + + E C PD T+ + C +M MR+ G P +
Sbjct: 558 ---EDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRD---SGCEPDK 611
Query: 407 STHKML 412
+ +L
Sbjct: 612 LAYNIL 617
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
S+L++ L K V A V + K C+ + LI G+CK K D A + K M
Sbjct: 545 SILINGLCKTKRVEDAINVLDVMLEKGCVP-DVATYTSLIDGFCKINKMDAAYQCFKTMR 603
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
G PD ++Y I +C+ + K ++ M EKGC P T +M +L
Sbjct: 604 DSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSL 656
>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 607
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 124/292 (42%), Gaps = 33/292 (11%)
Query: 153 VKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVFL 202
V + L NGY + + R R D S L++ L K N + A+++F
Sbjct: 275 VVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFY 334
Query: 203 KF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
+ + + + IF LIHG + + D +++ ++M G PD V Y + +C+
Sbjct: 335 EMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNG 394
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
D + M +G +P +T T ++ + + AL++ ++M + D +S
Sbjct: 395 DLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFS 454
Query: 322 SLIFILSKAVRFL-------------------IYNTMISSACVRSEEGNALKLRQKIEED 362
+LI + K R + Y M+ + C + + KL ++++ D
Sbjct: 455 ALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSD 514
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
P+ T+ L C +MK+ ++L+ ML+ G+VP + T+ L E
Sbjct: 515 GHIPNVVTYNVLLNGLCKLGQMKNADMLLD---AMLNVGVVPDDITYNTLLE 563
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 118/270 (43%), Gaps = 25/270 (9%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
L+ ++LM+ K ++ A KVF + K + + F+ LI+G+CK D +
Sbjct: 238 LNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRL 297
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
M + PD +Y+ I C+E EM E+G P+ + T ++H +
Sbjct: 298 KHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSR 357
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-----AVRFLI-------------- 335
QI + Y+KM S D Y++L+ K A R ++
Sbjct: 358 NGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVT 417
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
Y T+I C + AL++R++++++ + D + + C + R+ D L R
Sbjct: 418 YTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERAL---R 474
Query: 396 EMLSKGIVPQESTHKMLAEELEKKSLGNAK 425
EML G+ P + T+ M+ + KK G+A+
Sbjct: 475 EMLRAGMKPDDVTYTMMMDAFCKK--GDAQ 502
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 83/213 (38%), Gaps = 36/213 (16%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G+C+ D A + KEM Q+G D V ++ I C+E + L+EM
Sbjct: 418 YTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREML 477
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
G KP +T T++M A K K+ ++M+SD + + +
Sbjct: 478 RAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNV----------------V 521
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPD-------CETHARSLKMCCHKKRMKDG 387
YN +++ C + NA L + PD E H R H K+ +
Sbjct: 522 TYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEGHHRHANASKHYKQKPE- 580
Query: 388 MLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
GIV +++K L EL + S
Sbjct: 581 ------------IGIVADLASYKSLVNELYRAS 601
>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Vitis vinifera]
Length = 708
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 124/296 (41%), Gaps = 33/296 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
GY TY AM+ K K L+ + E G V +T + L
Sbjct: 360 GYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQE--QGLVP-----------NTNTYTTL 406
Query: 185 MDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D K + AY++ L K+ S + ++ +I G CK D A + + ++ HG
Sbjct: 407 IDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGL 466
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
DGV+YT + +CR+ D + +M + G P + + T ++ + KQ+ E+ +
Sbjct: 467 QADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESER 526
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS 363
++E+ SL I +K Y +MI C A+KL Q++
Sbjct: 527 LFEEA------------VSLGLIPTKKT----YTSMICGYCRYGNTSLAVKLFQRMSNHG 570
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
C PD T+ + C + ++ D NL M+ KG+ P E T LA E KK
Sbjct: 571 CAPDSITYGALISGLCKESKLDDAR---NLYDAMMDKGLSPCEVTRLTLAYEYCKK 623
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKF------KDCISLSSQIFDVLIHGWCKTRKSDYA 231
T+ ++ ++D V V A +F++ DC+S F +++ C + A
Sbjct: 189 TQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVS-----FKLMVVACCNMGRVLEA 243
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
++ + M + GF D + T I+ +C++ +V +M E G P+VI T +++
Sbjct: 244 ERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALING 303
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN 351
L K I +A ++ E+M + Y+ + T+I C +
Sbjct: 304 LCKQGSIKQAFELLEEMVRRG--WKPNVYT--------------HTTLIDGLCKKGWTEK 347
Query: 352 ALKLRQK-IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A +L K + D KP+ T+ + C + ++ ++L+ M+E +G+VP +T+
Sbjct: 348 AFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQE---QGLVPNTNTYT 404
Query: 411 MLAE 414
L +
Sbjct: 405 TLID 408
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 108/249 (43%), Gaps = 24/249 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKA-MKEMF 239
+ L++ L K+ S+ A+++ + + + LI G CK ++ A + +K +
Sbjct: 298 TALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVR 357
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G+ P+ +YT I YC+E + + L MQE+G P+ T T ++ K
Sbjct: 358 SDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFV 417
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRFL-------------IYNTMI 340
A ++ + M + + Y+++I L K A R L Y ++
Sbjct: 418 RAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILM 477
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
S C +++ +L K+ + PD ++ + C +K+MK+ L E +S
Sbjct: 478 SVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESE---RLFEEAVSL 534
Query: 401 GIVPQESTH 409
G++P + T+
Sbjct: 535 GLIPTKKTY 543
>gi|359487106|ref|XP_002274114.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
mitochondrial-like [Vitis vinifera]
Length = 571
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 143/327 (43%), Gaps = 48/327 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F W +TQ G+ HT +TYN M++ LGK +F L+W L++ + Y + V +R
Sbjct: 199 FDWVQTQCGFNHTTDTYNGMIDILGKFFEFDLIWVLIQRMKADPVAYPNHVTFRFVFKRY 258
Query: 177 ----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCI-SLSS 212
D + S L+D L + V A ++FLK KD + +
Sbjct: 259 AAAHLVEEAMNAYYRTEEFNLRDETSYSNLIDALCEYKHVIEAEELFLKESKDLVFNDDV 318
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE-KDFRKVDYTLK 271
+I+++++ GW K ++ +EM + G SY+ +++ C+ K +R V K
Sbjct: 319 KIYNIILRGWFKMGWWKKCREFWEEMDRRGVCKSLYSYSIYMDIQCKSGKPWRAVK-LYK 377
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
EM++KG + V+ V+ A+ ++ + +++V+ +MK C +
Sbjct: 378 EMKKKGIRLDVVAYNTVIRAIGLSEGVDFSIRVFREMKEVGCEPNV-------------- 423
Query: 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+ YNT+I C A + ++ E P+ T+ C K + +L
Sbjct: 424 --VTYNTIIKLLCENGRIREAYGVFDQMREKGYAPNVITY-HCFFGCIEKPKQ-----IL 475
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEK 418
M++ G+ P+ T+ ML ++ +
Sbjct: 476 RTFDRMINSGVRPRMDTYVMLMKKFGR 502
>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 566
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 145/331 (43%), Gaps = 45/331 (13%)
Query: 125 GYMHTPETYNAMVEALGKS--KKFGL-MWELVKEIDELSNGYVSLAAMST---------- 171
G + TY ++ L K+ KK G M+E ++E N Y M+
Sbjct: 228 GLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDA 287
Query: 172 --VMRRLDTRAMS-------VLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHG 221
V + R +S L+ L + + A KV + K D I+ + ++ LI G
Sbjct: 288 FQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDG 347
Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
+C K A +++ G SP V+Y + +CR+ D +KEM+E+G KPS
Sbjct: 348 FCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPS 407
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------LSKAVRF-- 333
+T TI++ ++ + +A+++ M+ + D YS LI +++A R
Sbjct: 408 KVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFK 467
Query: 334 -----------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
+IYNTMI C ALKL +++EE P+ ++ +++ C ++
Sbjct: 468 SMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKER 527
Query: 383 RMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
+ K+ L+ +M+ GI P S +++
Sbjct: 528 KSKEAE---RLVEKMIDSGIDPSTSILSLIS 555
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 128/307 (41%), Gaps = 35/307 (11%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
Y ++ + +S+ L E+ + NG+V + + L+ +V +
Sbjct: 97 YEVIINSYVQSQSLNLSISYFNEM--VDNGFVP-----------GSNCFNYLLTFVVGSS 143
Query: 193 SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
S + F + K + L F +LI G C+ + + + + E+ + GFSP+ V YT
Sbjct: 144 SFNQWWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTT 203
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I+ C++ + K EM + G + T T++++ L K + ++YEKM+ D
Sbjct: 204 LIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDG 263
Query: 313 CLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRSEEGNAL 353
+ Y+ ++ L K R + YNT+I C + A
Sbjct: 264 VFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEAN 323
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
K+ +++ D P+ T+ + C ++ L+L R++ S+G+ P T+ +L
Sbjct: 324 KVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKA---LSLCRDLKSRGLSPSLVTYNILV 380
Query: 414 EELEKKS 420
+K
Sbjct: 381 SGFCRKG 387
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D SVL+ + + A ++F K+C + I++ +I G+CK S A K
Sbjct: 442 DVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNC-EPNEVIYNTMILGYCKEGSSYRALKL 500
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
+KEM + +P+ SY IE C+E+ ++ + +++M + G PS +++ A
Sbjct: 501 LKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLISRA 557
>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
Length = 724
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 119/293 (40%), Gaps = 54/293 (18%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
+ A + LM L + S+ A VF ++ C + + + LI G+ K D A +
Sbjct: 350 NVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCP-NVRTYSALIDGYAKAGDLDGASEV 408
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
M HG P+ V+YTC ++ CR F + ++ MQ + C P+ +T + L
Sbjct: 409 WNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCG 468
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LI 335
+ ++ A+KV+++M + C +T+ Y+ L+ L K RF +
Sbjct: 469 SGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVT 528
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN--- 392
YNT+I C G AL+L K+ KPD T + C + ++ + +++
Sbjct: 529 YNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLS 588
Query: 393 -----------------------------LMREMLSKGIVPQESTHKMLAEEL 416
+R MLS+GI P +T +L L
Sbjct: 589 AGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 123/319 (38%), Gaps = 72/319 (22%)
Query: 126 YMHTPETYNAMVEALGKSKKFGLMWELVKE----------------IDELSNGYVSLAAM 169
+ HTP TY M+E L ++ + L+++ I S A+
Sbjct: 72 FKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQAL 131
Query: 170 STVMRRLDTRAMSV------LMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGW 222
T R D R ++D L+ N ++ K D + + +++L+
Sbjct: 132 KTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKAL 191
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYT------------------------------C 252
CK + D A K + EM G PD VSYT
Sbjct: 192 CKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFTPSVPVYNA 251
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I C+E F + L EM KG P+VI+ T +++AL A + +L V KM +
Sbjct: 252 LINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARG 311
Query: 313 CLTDTSFYSSLI--FILS----KAVRF-------------LIYNTMISSACVRSEEGNAL 353
C + ++SLI F L +A+ F + YN ++ C + G+A+
Sbjct: 312 CSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAV 371
Query: 354 KLRQKIEEDSCKPDCETHA 372
+ ++E + C P+ T++
Sbjct: 372 SVFNQMEINGCCPNVRTYS 390
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 114/290 (39%), Gaps = 37/290 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS--VLMDTLV 189
YNA++ + K F ++L +DE+ N + +D +S +++ L
Sbjct: 248 VYNALINGVCKEYTFEEAFQL---LDEMMN------------KGIDPNVISYTTIINALS 292
Query: 190 KRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
+V + V K F S + F LI G+ S A M + G P+ V
Sbjct: 293 DAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVV 352
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+Y + C ++ +M+ GC P+V T + ++ KA + A +V+ M
Sbjct: 353 AYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWM 412
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
+ C + Y+ ++ +L C S A L + ++ ++C P+
Sbjct: 413 ITHGCHPNVVAYTCMVDVL----------------CRNSMFNQAYCLIENMQVENCPPNT 456
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
T +K C R+ + V + +M + G P +T+ L + L K
Sbjct: 457 VTFNTFIKGLCGSGRVDWAIKVFD---QMGNSGCFPNTTTYNELLDSLLK 503
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 20/174 (11%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+G TYN ++++L K ++FG + LVK++ E ++L +T++ M
Sbjct: 484 NSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDM-EHRGIELNLVTYNTIIYGYCCAGML 542
Query: 183 V----LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
L+ +V R + A V +++I +CK K + A + M +
Sbjct: 543 GEALELLGKMVVRGTKPDAITV---------------NIVIDAYCKQGKVNIAIQLMDRL 587
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ PD ++YT I C + L+ M +G P+V T +++ L
Sbjct: 588 SAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 21/179 (11%)
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
++Y IE E++ V Y L++M+ +G S V+ + +A +ALK + +
Sbjct: 77 LTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYR 136
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
M+ Y+ ++ L RF + N + S+ +++D +P+
Sbjct: 137 MQDFRVKPTVKIYNHILDALLDENRFQMINPIYSN----------------MKKDGMEPN 180
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
T+ LK C R+ DG L+ EM SKG P E ++ L L K LG KE
Sbjct: 181 VFTYNILLKALCKNNRV-DG--AHKLLVEMSSKGCDPDEVSYTTLISSLCK--LGKVKE 234
>gi|293332689|ref|NP_001168961.1| hypothetical protein [Zea mays]
gi|223974035|gb|ACN31205.1| unknown [Zea mays]
gi|413921836|gb|AFW61768.1| hypothetical protein ZEAMMB73_696968 [Zea mays]
Length = 521
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 146/348 (41%), Gaps = 45/348 (12%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL------- 176
G PE ++ V A GK+++F L WE+V+ + + G ++ M +M R
Sbjct: 130 AGLPPPPEAWHLAVWAAGKARRFDLAWEIVRRMR--NRGVLTCRVMVILMERYAAASEVN 187
Query: 177 ----------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIH 220
D L+ L K ++ A ++ K L+++ F++++
Sbjct: 188 KAIKTFDVMEKFKIESDQSVFYSLLHALCKIKNIEDAEELLFLRKKFFPLTAEGFNIILD 247
Query: 221 GWCKT-RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
GWC A++ +EM H +PDG+SYT I + + + EM+++G
Sbjct: 248 GWCNVITDVAEAKRVWREMSNHCITPDGMSYTLMISCFSKVGNLFDTLRVYDEMKKRGWI 307
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTM 339
P ++ +++ L + + +A ++ K+ + D Y+++I L ++ + +
Sbjct: 308 PGIVVYNSLVYVLTRENCVKDAHNIFSKLTDEGLQPDVETYNNMIVPLCESCKLDEARKV 367
Query: 340 ISSACVRS-------------EEG--NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
+ S +R +EG +LKL QK++ED C P +T +
Sbjct: 368 MESMILRGIVPTISTYHAFLKQEGIDESLKLLQKMKEDGCGPKSDTFVMLIDKFFLLNES 427
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDEL 431
+ + V N MR+ I P + + L + L K + A E DE+
Sbjct: 428 GNALRVWNEMRKY---EISPVRAHYMTLVQGLVKHGCIPRALEYYDEM 472
>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
Length = 703
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 120/266 (45%), Gaps = 24/266 (9%)
Query: 174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQ 232
++LD + S +++ L + A KV+ K KD +S I++ LI G+C+ ++ A
Sbjct: 435 KQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAV 494
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ +M +G SP ++Y I+ C+ + +++ +EM E G P + T ++ L
Sbjct: 495 RIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGL 554
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------- 332
K+I +AL +++++ D ++ LI L A +
Sbjct: 555 FSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPN 614
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
+ YNT++ A L I ED +PD ++ +K C R+ +G +
Sbjct: 615 LVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEG---IQ 671
Query: 393 LMREMLSKGIVPQESTHKMLAEELEK 418
L+ E+LS+GI+P T +L + K
Sbjct: 672 LLDEVLSRGIIPTVITWNILVRAVIK 697
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/324 (20%), Positives = 125/324 (38%), Gaps = 74/324 (22%)
Query: 132 TYNAMVEAL---GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL 188
TYN M++ L G+ K+ G +WE M + D +L+ L
Sbjct: 266 TYNVMLDGLCKFGRFKEVGEVWE----------------RMVANNLQPDVITYGILIHGL 309
Query: 189 VKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQK-------------- 233
+ V A +V+ + K + + + +++ L+ G+C+ + A K
Sbjct: 310 CRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLR 369
Query: 234 ----AMKEMFQHGFS-----------------PDGVSYTCFIEHYCREKDFRKVDYTLKE 272
+K +F G PD V++ I C+ K +E
Sbjct: 370 TYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEE 429
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
+ G + V + + +++ L ++ +A+KVYEKM D C ++
Sbjct: 430 ARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSH-------------- 475
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
IYN +IS C +A+++ K+ ++ C P T+ + C ++ ++ +
Sbjct: 476 --IYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEAS---S 530
Query: 393 LMREMLSKGIVPQESTHKMLAEEL 416
+ REM+ G P +T+ L L
Sbjct: 531 VAREMVENGFTPDITTYGSLIRGL 554
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/340 (19%), Positives = 127/340 (37%), Gaps = 84/340 (24%)
Query: 105 PDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV 164
PD ++A + + G ++NA+++A ++++F ++ +
Sbjct: 99 PDAALDAFRAL-----PSILGCNPGIRSHNALLDAFVRARRF-----------SDADAFF 142
Query: 165 SLAAMSTVMRRL--DTRAMSVLMDTLVKRNSVAHAYKVFLKFK------DCISLSSQIFD 216
+ + RR+ + + ++++ +L R + A +F + DCI+ S+
Sbjct: 143 ASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYST---- 198
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT-----CF------------------ 253
L+ G K + D+A + EM + G PD V Y CF
Sbjct: 199 -LMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKD 257
Query: 254 -------------IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
++ C+ F++V + M +P VIT I++H L ++ +
Sbjct: 258 PGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDG 317
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR------------------FLIYNTMISS 342
A +VY ++ + D + Y+SL+ +A R YN MI
Sbjct: 318 AARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKG 377
Query: 343 ACVRSEEGNALKLRQKIEED-SCKPDCETHARSLKMCCHK 381
A++L +E+D +C PD T + C
Sbjct: 378 LFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQN 417
>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Cucumis sativus]
Length = 749
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 114/282 (40%), Gaps = 33/282 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T N MV AL K +KF N L+ M D + L++ +
Sbjct: 259 TLNIMVNALCKDRKF-------------ENVMFFLSDMEGKGVFADIVTYNTLINAYCRE 305
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A+++ F + ++ +++G CK K D A+ + EM Q G +P+ +Y
Sbjct: 306 GLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATY 365
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ CR + + EM +G P +++ + ++ L + +Y+AL + +M+
Sbjct: 366 NTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMER 425
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ D +IY +I C +ALK+R ++ C D T
Sbjct: 426 SGIVPDN----------------VIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVT 469
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ L C KK D ++ N EM+ +G+VP T L
Sbjct: 470 YNTFLNGLCKKKMFADADMLFN---EMVERGMVPDFYTFTTL 508
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 97/211 (45%), Gaps = 22/211 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G+CK + A++ +M + PD +SY + +C + +M
Sbjct: 540 YNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQML 599
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
EKG +P+++TC ++ ++ + +A + KM S+ + D+ Y++LI
Sbjct: 600 EKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLE 659
Query: 325 --FIL-----SKAVRFLI--YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
FIL + ++F I YN +++ C + A ++ +K+ E PD T++ +
Sbjct: 660 KAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLI 719
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
+ MK+ EML +G+VP +
Sbjct: 720 NGHVSQDNMKE---AFRFHDEMLQRGLVPDD 747
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 108/261 (41%), Gaps = 29/261 (11%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVL-----IHGWCKTRKSDYA 231
D ++L+D + +++ A LK +D + DV+ ++G CK + A
Sbjct: 431 DNVIYTILIDGFCRNGALSDA----LKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADA 486
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
EM + G PD ++T I YC++ + K + M KP +T ++
Sbjct: 487 DMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDG 546
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN 351
KA ++ A ++++ M D + D + Y T+++ C
Sbjct: 547 FCKAGEMGRAKELWDDMIRKDIIPDH----------------ISYGTVLNGFCSSGLLPE 590
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
AL L ++ E +P+ T +K C M L+ +M+S GI+P ++
Sbjct: 591 ALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLS---KMISNGIIPDSFSYNT 647
Query: 412 LAEE-LEKKSLGNAKERIDEL 431
L + L++ +L A I+E+
Sbjct: 648 LIDGYLKEANLEKAFILINEM 668
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/105 (20%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D+ + + L+D +K ++ A+ + + K + + ++++++G+C K A++ +
Sbjct: 641 DSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVL 700
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
++M + G +PDG +Y+ I + + + ++ EM ++G P
Sbjct: 701 RKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVP 745
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 106/230 (46%), Gaps = 23/230 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ +++G CK K + A+K EM + G +PDGVSY + YC+ + EM
Sbjct: 223 FNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMT 282
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
+KG P V+T T ++H + KA + A+ + +M+ + +++LI K
Sbjct: 283 QKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLD 342
Query: 330 ----AVR----------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
AVR + YN +I+ C+ A +L ++E KPD T++ +
Sbjct: 343 DALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTII 402
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNA 424
C + D L ++ML KG++P T+ L L E+K L +A
Sbjct: 403 SAYC---KNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDA 449
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 74/184 (40%), Gaps = 19/184 (10%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ ++ F LI G+CK D A A++ M Q P V Y I YC +
Sbjct: 321 LQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEAR 380
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
L EM+ KG KP V+T + ++ A K + A ++ ++M L D YSSLI +L
Sbjct: 381 ELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVL 440
Query: 328 SKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
+ R Y ++I C AL L K+ + PD
Sbjct: 441 CEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDV 500
Query: 369 ETHA 372
T++
Sbjct: 501 VTYS 504
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 20/189 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +I +CK + A + ++M + G PD ++Y+ I C EK K M
Sbjct: 398 YSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMI 457
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ G +P T T ++ K + AL +++KM L D YS LI LSK+ R +
Sbjct: 458 KLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAM 517
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
A +L K+ + P T +L CC K +K VL L+
Sbjct: 518 ----------------EAQQLLFKLYHEEPIP-ANTKYDALMHCCRKAELKS---VLALL 557
Query: 395 REMLSKGIV 403
+ KG++
Sbjct: 558 KGFCMKGLM 566
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/218 (19%), Positives = 90/218 (41%), Gaps = 19/218 (8%)
Query: 204 FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263
D ++ + +++LI C A +++M G P+ V+Y + + R +
Sbjct: 142 LSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEV 201
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+ + M + G KP+++T +++ + KA ++ +A KV+++M + D
Sbjct: 202 DGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDG------ 255
Query: 324 IFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+ YNT++ C AL + ++ + PD T + + C
Sbjct: 256 ----------VSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGN 305
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
++ + L+R+M +G+ E T L + KK
Sbjct: 306 LE---WAVTLVRQMRERGLQMNEVTFTALIDGFCKKGF 340
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/217 (18%), Positives = 84/217 (38%), Gaps = 22/217 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L+ + + + D A++ + M G P+ V++ + C+ EM
Sbjct: 188 YNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMM 247
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
+G P ++ ++ KA +EAL V+ +M + D ++SLI ++ KA
Sbjct: 248 REGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLE 307
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ + +I C + +AL + + + KP + +
Sbjct: 308 WAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALI 367
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C RM + L+ EM +KG+ P T+ +
Sbjct: 368 NGYCMVGRMDEAR---ELLHEMEAKGLKPDVVTYSTI 401
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 49/107 (45%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
L+ G+C + A K + M ++ DG Y+ I +CR + K K+M ++G
Sbjct: 556 LLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRG 615
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
P+ + ++ L + + EA +V +++ + L D +LI
Sbjct: 616 FAPNSTSTISLIRGLFENGMVVEADQVIQQLLNCCSLADAEASKALI 662
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKF----GLMWELVKEIDELSNGYVSLAAMSTVMRRLD 177
+ G + TY+ ++ L KS + L+++L E +N A+ R+ +
Sbjct: 492 VKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPAN--TKYDALMHCCRKAE 549
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
+++ L+ + + A KV+ D +L ++ VLIHG C+ A K
Sbjct: 550 LKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHK 609
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+M Q GF+P+ S I + D ++++
Sbjct: 610 QMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQL 646
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 21/217 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I G+ K + D A + M GFSPD V+Y I C + E+
Sbjct: 134 YNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELL 193
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ GCKPSVIT TI++ A +I EAL++++++ S D
Sbjct: 194 KDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPD----------------LY 237
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN +I C E AL + + C PD ++ L+ +K R +DG LM
Sbjct: 238 TYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGE---RLM 294
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431
++M+ G P TH +L ++ G +E ++ L
Sbjct: 295 KDMVLSGCEPNVVTHSILISSFCRE--GRVREAVNVL 329
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 133/317 (41%), Gaps = 54/317 (17%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG-------YVSLAAMSTVMRRLD 177
G+ TYN M+ +L K L +E++ E+ L +G Y L + + R++
Sbjct: 161 GFSPDVVTYNIMIGSLCSRGKLELAFEVMDEL--LKDGCKPSVITYTILIEATILEGRIN 218
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
A+ L D LV R Y ++ +I G CK D A ++
Sbjct: 219 -EALE-LFDELVSRGLRPDLYT---------------YNAIIRGICKEGMEDRALDFVRH 261
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
+ G +PD VSY + + + + + +K+M GC+P+V+T +I++ + + +
Sbjct: 262 LSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGR 321
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNT 338
+ EA+ V E MK D+ Y LI K R + YNT
Sbjct: 322 VREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNT 381
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDC---ETHARSLKMCCHKKRMKDGMLVLNLMR 395
++++ C AL + +K++E C P T +L C +K + L ++
Sbjct: 382 ILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIK------ALEMIS 435
Query: 396 EMLSKGIVPQESTHKML 412
EM+ KGI P E T+ L
Sbjct: 436 EMIRKGIDPDEITYNSL 452
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 92/204 (45%), Gaps = 20/204 (9%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
L++ C+ K + + ++ + GF PD V T I+ + ++ +K ++ ++ G
Sbjct: 68 LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337
P V + ++ KA QI A +V+++M+S D + YN
Sbjct: 128 -DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDV----------------VTYN 170
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
MI S C R + A ++ ++ +D CKP T+ ++ + R+ + L L E+
Sbjct: 171 IMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEA---LELFDEL 227
Query: 398 LSKGIVPQESTHKMLAEELEKKSL 421
+S+G+ P T+ + + K+ +
Sbjct: 228 VSRGLRPDLYTYNAIIRGICKEGM 251
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 100/239 (41%), Gaps = 26/239 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
S+L+ + + V A V K+ ++ S +D LI +CK + D A + +++M
Sbjct: 310 SILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVS 369
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTL---KEMQEKGCKPSVITCTIVMHALEKAKQ 297
G PD V+Y + C+ F D L +++ E GC P+V + AL
Sbjct: 370 DGCLPDIVNYNTILATLCK---FGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGN 426
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
+AL++ +M D + YN++IS C A+ L
Sbjct: 427 KIKALEMISEMIRKGIDPDE----------------ITYNSLISCLCRDGLVDEAIGLLV 470
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+E +P + L C R+ +G + L+ M+ KG +P E+++ +L E +
Sbjct: 471 DMEATRFQPTVISFNIVLLGMCKAHRVFEG---IELLITMVEKGCLPNETSYVLLIEGI 526
>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12300, mitochondrial; Flags: Precursor
gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 637
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/344 (21%), Positives = 146/344 (42%), Gaps = 71/344 (20%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY ++ + KS + L EL+++++E + +LD S+++D L K
Sbjct: 230 TYGPVLNVMCKSGQTALAMELLRKMEERN-------------IKLDAVKYSIIIDGLCKH 276
Query: 192 NSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAM--------------- 235
S+ +A+ +F + + I+ + +++LI G+C + D K +
Sbjct: 277 GSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTF 336
Query: 236 --------------------KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
KEM G +PD ++YT I+ +C+E K + + M
Sbjct: 337 SVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVS 396
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF---------- 325
KGC P++ T I+++ KA +I + L+++ KM + DT Y++LI
Sbjct: 397 KGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNV 456
Query: 326 -------ILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
++S+ V + Y ++ C E AL++ +KIE+ + D + +
Sbjct: 457 AKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIH 516
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C+ ++ D +L + KG+ P T+ ++ L KK
Sbjct: 517 GMCNASKVDDAW---DLFCSLPLKGVKPGVKTYNIMIGGLCKKG 557
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 22/216 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKV--FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
DT + L+D K N + A ++ + K C + + F++LI+G+CK + D +
Sbjct: 367 DTITYTSLIDGFCKENHLDKANQMVDLMVSKGC-DPNIRTFNILINGYCKANRIDDGLEL 425
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
++M G D V+Y I+ +C +EM + P+++T I++ L
Sbjct: 426 FRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCD 485
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LI 335
+ +AL+++EK++ D Y+ +I + A +
Sbjct: 486 NGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKT 545
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
YN MI C + A L +K+EED PD T+
Sbjct: 546 YNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTY 581
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
++I+ +C+ RK A AM ++ + G+ P+ ++++ I C E + + M E
Sbjct: 128 IMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM 187
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI- 335
G KP +IT +++ L + + EA+ + +KM C + Y ++ ++ K+ + +
Sbjct: 188 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 247
Query: 336 ------------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
Y+ +I C NA L ++E + T+ +
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 307
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C+ R DG L+R+M+ + I P T +L + K+
Sbjct: 308 FCNAGRWDDGA---KLLRDMIKRKINPNVVTFSVLIDSFVKEG 347
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/332 (19%), Positives = 138/332 (41%), Gaps = 39/332 (11%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
++ + A+ K+K++ L+ L K+++ + + L T +S++++ +
Sbjct: 91 FSRLFSAIAKTKQYDLVLALCKQME-----------LKGIAHNLYT--LSIMINCFCRCR 137
Query: 193 SVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
+ A+ K K ++ F LI+G C + A + + M + G PD ++
Sbjct: 138 KLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITIN 197
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ C + + +M E GC+P+ +T V++ + K+ Q A+++ KM+
Sbjct: 198 TLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEER 257
Query: 312 DCLTDTSFYSSLIFILSK-------------------AVRFLIYNTMISSACVRSEEGNA 352
+ D YS +I L K + YN +I C +
Sbjct: 258 NIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDG 317
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
KL + + + P+ T + + + ++++ L +EM+ +GI P T+ L
Sbjct: 318 AKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE---ELHKEMIHRGIAPDTITYTSL 374
Query: 413 AEELEKKS-LGNAKERIDELLTHATEQ--RTF 441
+ K++ L A + +D +++ + RTF
Sbjct: 375 IDGFCKENHLDKANQMVDLMVSKGCDPNIRTF 406
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 97/238 (40%), Gaps = 21/238 (8%)
Query: 96 EILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE 155
IL Y +++ + L+ F + G + TYN +++ + K + EL +E
Sbjct: 407 NILINGYCKANRIDDGLELF---RKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQE 463
Query: 156 IDELSNGYVSLAAMSTVMRRLDTRAMS--VLMDTLVKRNSVAHAYKVFLKF-KDCISLSS 212
+ V R++ ++ +L+D L A ++F K K + L
Sbjct: 464 M---------------VSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDI 508
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
I++++IHG C K D A + G P +Y I C++ + + ++
Sbjct: 509 GIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRK 568
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
M+E G P T I++ A +++K+ E++K D S +I +LS
Sbjct: 569 MEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDG 626
>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
Length = 703
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 120/266 (45%), Gaps = 24/266 (9%)
Query: 174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQ 232
++LD + S +++ L + A KV+ K KD +S I++ LI G+C+ ++ A
Sbjct: 435 KQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAV 494
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ +M +G SP ++Y I+ C+ + +++ +EM E G P + T ++ L
Sbjct: 495 RIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGL 554
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------- 332
K+I +AL +++++ D ++ LI L A +
Sbjct: 555 FSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPN 614
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
+ YNT++ A L I ED +PD ++ +K C R+ +G +
Sbjct: 615 LVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEG---IQ 671
Query: 393 LMREMLSKGIVPQESTHKMLAEELEK 418
L+ E+LS+GI+P T +L + K
Sbjct: 672 LLDEVLSRGIIPTVITWNILVRAVIK 697
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/383 (21%), Positives = 144/383 (37%), Gaps = 90/383 (23%)
Query: 86 DHETDVDKVSEILRKRYPSPDKV-VEALKCFCF----------TWAKT--QTGYMHTPET 132
DH D+ + E+ R R PD V AL CF W K G T
Sbjct: 210 DHALDL--LDEMPRSRV-QPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLAT 266
Query: 133 YNAMVEAL---GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLV 189
YN M++ L G+ K+ G +WE M + D +L+ L
Sbjct: 267 YNVMLDGLCKFGRFKEVGEVWE----------------RMVANNLQPDVITYGILIHGLC 310
Query: 190 KRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQK--------------- 233
+ V A +V+ + K + + + +++ L+ G+C+ + A K
Sbjct: 311 RSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRT 370
Query: 234 ---AMKEMFQHGFS-----------------PDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+K +F G PD V++ I C+ K +E
Sbjct: 371 YNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEA 430
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+ G + V + + +++ L ++ +A+KVYEKM D C ++
Sbjct: 431 RVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSH--------------- 475
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
IYN +IS C +A+++ K+ ++ C P T+ + C ++ ++ ++
Sbjct: 476 -IYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEAS---SV 531
Query: 394 MREMLSKGIVPQESTHKMLAEEL 416
REM+ G P +T+ L L
Sbjct: 532 AREMVENGFTPDITTYGSLIRGL 554
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 21/226 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D S LM L K++ + HA + + + + ++ L+ G K + + +
Sbjct: 192 DRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVW 251
Query: 236 KEMFQH-GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
++ + G P+ +Y ++ C+ F++V + M +P VIT I++H L +
Sbjct: 252 DKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCR 311
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR------------------FLIY 336
+ + A +VY ++ + D + Y+SL+ +A R Y
Sbjct: 312 SGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTY 371
Query: 337 NTMISSACVRSEEGNALKLRQKIEED-SCKPDCETHARSLKMCCHK 381
N MI A++L +E+D +C PD T + C
Sbjct: 372 NIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQN 417
>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
Length = 708
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 124/296 (41%), Gaps = 33/296 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
GY TY AM+ K K L+ + E G V +T + L
Sbjct: 360 GYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQE--QGLVP-----------NTNTYTTL 406
Query: 185 MDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D K + AY++ L K+ S + ++ +I G CK D A + + ++ HG
Sbjct: 407 IDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGL 466
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
DGV+YT + +CR+ D + +M + G P + + T ++ + KQ+ E+ +
Sbjct: 467 QADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESER 526
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS 363
++E+ SL I +K Y +MI C A+KL Q++
Sbjct: 527 LFEEA------------VSLGLIPTKKT----YTSMICGYCRYGNTSLAVKLFQRMSNHG 570
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
C PD T+ + C + ++ D NL M+ KG+ P E T LA E KK
Sbjct: 571 CAPDSITYGALISGLCKESKLDDAR---NLYDAMMDKGLSPCEVTRLTLAYEYCKK 623
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKF------KDCISLSSQIFDVLIHGWCKTRKSDYA 231
T+ ++ ++D V V A +F++ DC+S F +++ C + A
Sbjct: 189 TQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVS-----FKLMVVACCNMGRVLEA 243
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
+K + M + GF D + T I+ +C++ +V +M E G P+VI T +++
Sbjct: 244 EKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALING 303
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN 351
L K I +A ++ E+M + Y+ + T+I C +
Sbjct: 304 LCKQGSIKQAFELLEEMVRRG--WKPNVYT--------------HTTLIDGLCKKGWTEK 347
Query: 352 ALKLRQK-IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A +L K + D KP+ T+ + C + ++ ++L+ M+E +G+VP +T+
Sbjct: 348 AFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQE---QGLVPNTNTYT 404
Query: 411 MLAE 414
L +
Sbjct: 405 TLID 408
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 108/249 (43%), Gaps = 24/249 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKA-MKEMF 239
+ L++ L K+ S+ A+++ + + + LI G CK ++ A + +K +
Sbjct: 298 TALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVR 357
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G+ P+ +YT I YC+E + + L MQE+G P+ T T ++ K
Sbjct: 358 SDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFV 417
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRFL-------------IYNTMI 340
A ++ + M + + Y+++I L K A R L Y ++
Sbjct: 418 RAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILM 477
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
S C +++ +L K+ + PD ++ + C +K+MK+ L E +S
Sbjct: 478 SVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESE---RLFEEAVSL 534
Query: 401 GIVPQESTH 409
G++P + T+
Sbjct: 535 GLIPTKKTY 543
>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
EFFECT EMBRYO ARREST 40; Flags: Precursor
gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 754
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 131/291 (45%), Gaps = 41/291 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++++L K ++K++ ELS S+ +T L+D K
Sbjct: 437 TYNMLIDSLCSKGKLDEALNMLKQM-ELSGCARSVITYNT------------LIDGFCKA 483
Query: 192 NSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
N A ++F + + +S +S ++ LI G CK+R+ + A + M +M G PD +Y
Sbjct: 484 NKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTY 543
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ H+CR D +K ++ M GC+P ++T ++ L KA ++ A K+ ++
Sbjct: 544 NSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQ- 602
Query: 311 DDCLTDTSFYSSLIFILSKAVRFL--IYNTMISSACVRSEEGNALKL-RQKIEEDSCKPD 367
K + YN +I + + A+ L R+ +E++ PD
Sbjct: 603 -----------------MKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPD 645
Query: 368 CETHARSLKMCCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLAEEL 416
++ + C+ G + ++ + E+L KG VP+ S+ MLAE L
Sbjct: 646 AVSYRIVFRGLCN----GGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGL 692
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 128/301 (42%), Gaps = 38/301 (12%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
Q GY TYN+++ L K G + E V+ +D+ M T +T +
Sbjct: 323 QEGYDPDVYTYNSVISGLCK---LGEVKEAVEVLDQ----------MITRDCSPNTVTYN 369
Query: 183 VLMDTLVKRNSVAHAYKV--FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L+ TL K N V A ++ L K + F+ LI G C TR A + +EM
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILP-DVCTFNSLIQGLCLTRNHRVAMELFEEMRS 428
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD +Y I+ C + + LK+M+ GC SVIT ++ KA + E
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTRE 488
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMIS 341
A +++++M+ ++ Y++LI L K+ R YN++++
Sbjct: 489 AEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLT 548
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C + A + Q + + C+PD T+ + C R++ + L+R + KG
Sbjct: 549 HFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVE---VASKLLRSIQMKG 605
Query: 402 I 402
I
Sbjct: 606 I 606
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 98/227 (43%), Gaps = 20/227 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ L++G CK +A + M M Q G+ PD +Y I C+ + ++ L +M
Sbjct: 298 FNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMI 357
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ C P+ +T ++ L K Q+ EA ++ + S L D
Sbjct: 358 TRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVC---------------- 401
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+N++I C+ A++L +++ C+PD T+ + C K ++ + LN++
Sbjct: 402 TFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEA---LNML 458
Query: 395 REMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATEQRT 440
++M G T+ L + K + A+E DE+ H + +
Sbjct: 459 KQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNS 505
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/348 (21%), Positives = 142/348 (40%), Gaps = 55/348 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYV 164
F A + + P Y ++ LG+S F M ++++++ L Y
Sbjct: 70 FNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYA 129
Query: 165 SLAAMSTVMR-----------RLDTRAMSVLMDTLVKRNS-----VAHAYKVFLKFKDCI 208
++ + DT + +++ LV NS ++HA K +
Sbjct: 130 QFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDV 189
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
S F+VLI C+ + A +++M +G PD ++T ++ Y E D
Sbjct: 190 S----TFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR 245
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC-LTDTSFYSSLIFIL 327
++M E GC S ++ +++H K ++ +AL ++M + D D +++L+ L
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGL 305
Query: 328 SKA--VRFLI-----------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
KA V+ I YN++IS C E A+++ ++ C P+
Sbjct: 306 CKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNT 365
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
T+ + C + ++++ L R + SKGI+P T L + L
Sbjct: 366 VTYNTLISTLCKENQVEEAT---ELARVLTSKGILPDVCTFNSLIQGL 410
>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
Length = 500
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 131/301 (43%), Gaps = 33/301 (10%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F G+ TY A++ AL + + E K ++E++N ++ ++
Sbjct: 33 FLGKMVSKGFHPDVYTYTAVIHALCVENR---LHEARKFLEEMANRNLTPNVVT------ 83
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
+VL+D L K V A + K + ++ ++ LI G CK ++ A ++
Sbjct: 84 ----YTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLE 139
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM G PD +YT I +C+ K +++ +G +P V+T + ++ L K
Sbjct: 140 EMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEG 199
Query: 297 QIYEALKVYEKM-KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ EA+ ++ +M KS C+ +T + YN++IS C + A+ L
Sbjct: 200 RLKEAIDLFGRMIKSGSCMPNT----------------VTYNSLISGFCRMGKMDEAMNL 243
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+++ E PD T+ + C R+ D +LN +M KG+ P T L +
Sbjct: 244 LERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLN---QMTRKGLTPDVVTFTSLMDG 300
Query: 416 L 416
L
Sbjct: 301 L 301
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 116/249 (46%), Gaps = 37/249 (14%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ L++G+CK + D A + +M + G +PD V++T ++ CRE + L EM+
Sbjct: 259 YTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMR 318
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALK-VYEKMKSDDCLTDTSFYSSLIFILSKAVR- 332
K C P+V T ++ +A Q+ EA K + E+M DC + ++ +I L K R
Sbjct: 319 RKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEM---DCPPNVVSFNIMIRGLCKVNRS 375
Query: 333 ------------------FLIYNTMISSACVRSEEGNALKL-RQKIEEDSCKPDCETHAR 373
++Y T+I C + A ++ R+ +EE C P+ T++
Sbjct: 376 SEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYST 435
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLG-NAKERIDELL 432
+ C+ GM L+ R + KG VP T+ +L + K + +A+E +D+++
Sbjct: 436 LVTGLCNA-----GM--LDRARGYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMV 488
Query: 433 THATEQRTF 441
QR F
Sbjct: 489 -----QRGF 492
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 98/215 (45%), Gaps = 24/215 (11%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LI G CK ++ + A + +M GF PD +YT I C E + L+EM +
Sbjct: 17 LIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRN 76
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----- 332
P+V+T T+++ L K ++ EA+ + KM+ C+ Y+SLI L KA R
Sbjct: 77 LTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGLCKAERASEAY 135
Query: 333 --------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
Y T+I+ C + +AL++ +++ +PD T++ +
Sbjct: 136 DLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGL 195
Query: 379 CHKKRMKDGMLVLNLMREMLSKG-IVPQESTHKML 412
C + R+K+ ++L M+ G +P T+ L
Sbjct: 196 CKEGRLKEA---IDLFGRMIKSGSCMPNTVTYNSL 227
>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
Length = 500
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 131/301 (43%), Gaps = 33/301 (10%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F G+ TY A++ AL + + E K ++E++N ++ ++
Sbjct: 33 FLGKMVSKGFHPDVYTYTAVIHALCVENR---LHEARKFLEEMANRNLTPNVVT------ 83
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
+VL+D L K V A + K + ++ ++ LI G CK ++ A ++
Sbjct: 84 ----YTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLE 139
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM G PD +YT I +C+ K +++ +G +P V+T + ++ L K
Sbjct: 140 EMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEG 199
Query: 297 QIYEALKVYEKM-KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ EA+ ++ +M KS C+ +T + YN++IS C + A+ L
Sbjct: 200 RLKEAIDLFGRMIKSGSCMPNT----------------VTYNSLISGFCRMGKMDEAMNL 243
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+++ E PD T+ + C R+ D +LN +M KG+ P T L +
Sbjct: 244 LERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLN---QMTRKGLTPDVVTFTSLMDG 300
Query: 416 L 416
L
Sbjct: 301 L 301
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 116/249 (46%), Gaps = 37/249 (14%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ L++G+CK + D A + +M + G +PD V++T ++ CRE + L EM+
Sbjct: 259 YTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMR 318
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALK-VYEKMKSDDCLTDTSFYSSLIFILSKAVR- 332
K C P+V T ++ +A Q+ EA K + E+M DC + ++ +I L K R
Sbjct: 319 RKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEM---DCPPNVVSFNIMIRGLCKVNRS 375
Query: 333 ------------------FLIYNTMISSACVRSEEGNALKL-RQKIEEDSCKPDCETHAR 373
++Y T+I C + A ++ R+ +EE C P+ T++
Sbjct: 376 SEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYST 435
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLG-NAKERIDELL 432
+ C+ GM L+ R + KG VP T+ +L + K + +A+E +D+++
Sbjct: 436 LITGLCNA-----GM--LDRARGYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMV 488
Query: 433 THATEQRTF 441
QR F
Sbjct: 489 -----QRGF 492
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 98/215 (45%), Gaps = 24/215 (11%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LI G CK ++ + A + +M GF PD +YT I C E + L+EM +
Sbjct: 17 LIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRN 76
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----- 332
P+V+T T+++ L K ++ EA+ + KM+ C+ Y+SLI L KA R
Sbjct: 77 LTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGLCKAERASEAY 135
Query: 333 --------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
Y T+I+ C + +AL++ +++ +PD T++ +
Sbjct: 136 DLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGL 195
Query: 379 CHKKRMKDGMLVLNLMREMLSKG-IVPQESTHKML 412
C + R+K+ ++L M+ G +P T+ L
Sbjct: 196 CKEGRLKEA---IDLFGRMIKSGSCMPNTVTYNSL 227
>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 418
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 142/343 (41%), Gaps = 41/343 (11%)
Query: 98 LRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTP-ETYNAMVEALGKSKKFGLMWELVKEI 156
L Y V +A++CF T + + P +T ++E L K K F L+W KEI
Sbjct: 72 LINAYLESGFVRDAIECFRLT----REHKLRVPFDTCRKVLEHLMKLKYFKLVWGFYKEI 127
Query: 157 DELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIF 215
L GY + ++LM K + A VF K + S F
Sbjct: 128 --LECGYPA-----------SLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSF 174
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+ L++G+ + D K M G PD +Y+ I C+E + + EM +
Sbjct: 175 NTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLD 234
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-- 333
KG P+ +T T ++ K ++ A++ Y++M S L D Y++LI+ L K
Sbjct: 235 KGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQ 294
Query: 334 -----------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+ Y T+I C + +A +LR+ + ++S + D + +
Sbjct: 295 AQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALIS 354
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
C + R D ++REMLS G+ P T+ M+ E KK
Sbjct: 355 GLCQEGRATDAE---KMLREMLSVGLKPDNGTYTMIINEFCKK 394
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 115/271 (42%), Gaps = 31/271 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L AM + D SVL++ L K + +
Sbjct: 164 KWGLRPSVV-SFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKM 222
Query: 195 AHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A +F + D + + F LI G CK K D A + K+M F PD ++Y
Sbjct: 223 NEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTL 282
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I C++ D ++ L EM+ KG KP IT T ++ K + A ++ E M +
Sbjct: 283 IYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESI 342
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
D Y++L IS C +A K+ +++ KPD T+
Sbjct: 343 RLDDVAYTAL----------------ISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTM 386
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ C K+ +K L++EM +G VP
Sbjct: 387 IINEFCKKEDVKTAA---KLLKEMQRQGHVP 414
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
K+ I L + LI G C+ ++ A+K ++EM G PD +YT I +C+++D +
Sbjct: 339 KESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVK 398
Query: 265 KVDYTLKEMQEKGCKPSVIT 284
LKEMQ +G P V+T
Sbjct: 399 TAAKLLKEMQRQGHVPCVVT 418
>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
Length = 702
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 142/343 (41%), Gaps = 46/343 (13%)
Query: 119 WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELS------------------ 160
W T + TYN M + L S EL+K+++ +
Sbjct: 357 WDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCE 416
Query: 161 NGYVS-----LAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQI 214
NGY + L LD + S +++ K A +V+ KD +S +
Sbjct: 417 NGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHV 476
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI+G+C+ K + A K EM +G P ++Y I+ C+ + +++ KEM
Sbjct: 477 YNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEML 536
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
E+G KP + T ++ L + K++ AL++++++ D ++ LI L A +
Sbjct: 537 ERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVD 596
Query: 333 -----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ YNT++ A L I ++ KPD T+ +
Sbjct: 597 EAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRI 656
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
K C R +G+L+LN E+L+ GI+P T +L + K
Sbjct: 657 KGLCSCNRTPEGVLLLN---EVLATGIMPTVITWSILVRAVIK 696
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 95/241 (39%), Gaps = 24/241 (9%)
Query: 165 SLAAMSTVMRR---LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIH 220
+++ S++ RR D S LM L K + + +A + + + + + ++ L+
Sbjct: 177 AVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNALLS 236
Query: 221 GWCKTRKSDYAQKAMKEMFQH-GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
G +T + A K +++ + G SP+ +Y ++ C+ F++ M +
Sbjct: 237 GCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQ 296
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR------- 332
+T I++H L ++ + A +VY M + D S Y+SLI + R
Sbjct: 297 ADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKF 356
Query: 333 -----------FLIYNTMISSACVRSEEGNALKLRQKIEED-SCKPDCETHARSLKMCCH 380
YN M A +L +++E D SC PD T + C
Sbjct: 357 WDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCE 416
Query: 381 K 381
Sbjct: 417 N 417
>gi|297745567|emb|CBI40732.3| unnamed protein product [Vitis vinifera]
Length = 520
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 131/315 (41%), Gaps = 36/315 (11%)
Query: 47 KFFDTQSPDEDF---VIPSLASWVESLKLNEQSRISSHALSEDHETDV------DKVSEI 97
K F SP E + S E L+ R+ A E T+V D VSE+
Sbjct: 38 KPFTENSPKEQLKTRAVDGFLSPGEKLRGVFIQRLRGKAAIELALTNVGIDLTIDIVSEV 97
Query: 98 LRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE-- 155
+ + EA+ F F WA Q +TYN +++ALG+ K + +++K+
Sbjct: 98 INRGNLGG----EAMVIF-FNWAVKQPTIPKDVDTYNVIIKALGRRKFIEFVVKVLKDMH 152
Query: 156 IDELSNGYVSLA-AMSTVMR-------------------RLDTRAMSVLMDTLVKRNSVA 195
I +S Y +L+ M + ++ + DT +++VL+ L +R+ V
Sbjct: 153 IQGISPNYETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCDTESLNVLLQCLCQRSHVG 212
Query: 196 HAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255
A F K I + ++++I GW K K ++ +K M GFSP+ ++++ IE
Sbjct: 213 AANLFFNAMKGGIPFNCMTYNIIIGGWSKYGKIGEMERCLKAMVADGFSPNCLTFSHLIE 272
Query: 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315
R M+E GC P+ ++ + E LK Y M S +C
Sbjct: 273 GLGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRDFDECLKYYNFMVSSNCDP 332
Query: 316 DTSFYSSLIFILSKA 330
+ Y+ LI KA
Sbjct: 333 NMDTYTKLIVAFLKA 347
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 21/182 (11%)
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+Y I+ R K V LK+M +G P+ T +IVM + KA+Q+ +A++++ +
Sbjct: 127 TYNVIIKALGRRKFIEFVVKVLKDMHIQGISPNYETLSIVMDSFIKARQVSKAIEMFRNL 186
Query: 309 KSDDCLTDTSFYSSLIFILSK----------------AVRF--LIYNTMISSACVRSEEG 350
+ DT + L+ L + + F + YN +I + G
Sbjct: 187 EEFGGKCDTESLNVLLQCLCQRSHVGAANLFFNAMKGGIPFNCMTYNIIIGGWSKYGKIG 246
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
+ + + D P+C T + ++ R+ D + V + M E G VP +
Sbjct: 247 EMERCLKAMVADGFSPNCLTFSHLIEGLGRAGRIDDAVEVFHHMEE---TGCVPNACVYN 303
Query: 411 ML 412
L
Sbjct: 304 AL 305
>gi|212274591|ref|NP_001130971.1| GTP binding protein [Zea mays]
gi|194690592|gb|ACF79380.1| unknown [Zea mays]
gi|413947420|gb|AFW80069.1| GTP binding protein [Zea mays]
Length = 535
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/364 (22%), Positives = 146/364 (40%), Gaps = 49/364 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR- 175
F WA T GY H Y M++ LG+ KK M +L EI E V M V+
Sbjct: 131 FNWAATLPGYAHGSRAYTEMLDILGRMKKVRHMRQLFDEIPEERRQVVVTNKMFAVLLNR 190
Query: 176 -----------------------LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS 212
LD +L+ +L + V A +F + KD +
Sbjct: 191 YAGAHKVQEAIEVFYLRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFREKKDEFPHVT 250
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
+ ++++++GWC AQ+ ++ D ++ FI + K+
Sbjct: 251 KSWNIILNGWCVKGSLRDAQRIWNDIIASKVERDLFTFGTFINALAKNGRISAAVKLFKQ 310
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M EKG P V C ++ L K+I EAL+++ +M C D + Y++LI + K R
Sbjct: 311 MWEKGINPDVAICNCIIDQLCFKKKIPEALEIFGEMNDRLCQADVATYNTLIKYMCKIKR 370
Query: 333 ----FLIYNTMISSAC------------VRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+ + + M + C + + + L Q++E CK D + + L
Sbjct: 371 MEKVYELLDDMEAKGCPPNNRTYSYILKTTEKPKDVIALMQRMERTGCKLDSDIYNLILN 430
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436
+ K + + GM + EM +G P + + ++ L +++ ++DE L + T
Sbjct: 431 LYI-KWKYEKGM--QQIWDEMERRGSGPDQRSFTIMVHGL------HSQGKLDEALQYYT 481
Query: 437 EQRT 440
++
Sbjct: 482 TMKS 485
>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
Length = 778
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 130/311 (41%), Gaps = 50/311 (16%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELS--NGYVSLAAMSTVMRRL---- 176
++G+ TYN ++ K+ G M E + +DE+ N + ++T++R L
Sbjct: 411 ESGFSPDCVTYNTLINGYCKA---GNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREK 467
Query: 177 -------------------DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIF 215
D + L+ K +V A K++ +K K+ I S+ +
Sbjct: 468 KLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIP-STVTY 526
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+ +I G C+ K++ A + E+ + G PD +Y + YCRE D K +M E
Sbjct: 527 NCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVE 586
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335
KP V TC I++ L + +ALK++ S KA+ +
Sbjct: 587 NSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSK----------------GKAIDTVT 630
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
YNT+I+S C +A L ++EE PD T+ + R+++ M
Sbjct: 631 YNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAE---EFMS 687
Query: 396 EMLSKGIVPQE 406
+ML KG +P +
Sbjct: 688 KMLEKGXLPXQ 698
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 122/287 (42%), Gaps = 31/287 (10%)
Query: 173 MRRLDTR----AMSVLMDTLVKRNSVAHAYKVFLKFKDCISL----SSQIFDVLIHGWCK 224
M+RL R + L+++LV+ S F D I L + F+++I+G+C
Sbjct: 161 MKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCL 220
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
K A + + M ++ SPD V+Y ++ C++ L +M+ +G P+ T
Sbjct: 221 ENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNT 280
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------- 333
I+++ K + EA V E M ++ L D Y+ LI L R
Sbjct: 281 YNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEME 340
Query: 334 --------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
+ YNT+I+ S+ A KL +++ E KP+ TH +K C + +M
Sbjct: 341 NLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMD 400
Query: 386 DGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK-SLGNAKERIDEL 431
D N + +M G P T+ L K ++G A +DE+
Sbjct: 401 DAS---NTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEM 444
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 127/296 (42%), Gaps = 41/296 (13%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-DTRA 180
TQ + TYN ++ L G + E K DE+ N ++ L D +
Sbjct: 305 TQNNLLPDVWTYNMLINGLCNE---GRIEEAFKLRDEMEN-----------LKLLPDVVS 350
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ L++ ++ + ++ A+K+ + + + ++ ++++ +CK K D A + +M
Sbjct: 351 YNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKME 410
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ GFSPD V+Y I YC+ + + T+ EM K K +T ++ L + K++
Sbjct: 411 ESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLE 470
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN---ALKLR 356
EA K+ + D Y +LI K +GN ALKL
Sbjct: 471 EAYKLLSSARKRGYFIDEVSYGTLIVGYFK-------------------DGNVDRALKLW 511
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+++E P T+ + C + + + LN E+L G++P E+T+ +
Sbjct: 512 DEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLN---ELLESGLLPDETTYNTI 564
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/144 (19%), Positives = 67/144 (46%), Gaps = 16/144 (11%)
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
K+M+ +P+++TC ++++L + + + +F ++ +
Sbjct: 158 FKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSV-----------SFSREAFNDAIKLGIVP 206
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
V +N +I C+ ++ +A++ + + +C PD T+ L C K R+ D
Sbjct: 207 NVN--TFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDAR- 263
Query: 390 VLNLMREMLSKGIVPQESTHKMLA 413
+L+ +M S+G++P +T+ +L
Sbjct: 264 --DLLMDMKSRGLLPNRNTYNILV 285
>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
Length = 632
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/347 (22%), Positives = 145/347 (41%), Gaps = 48/347 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA + Y H TY A++ L +++G MW++++E+ V+ +S V+R L
Sbjct: 110 FRWAAKKRNYQHDTSTYMALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRML 169
Query: 177 DT-----RAMSVLMDTLVKR-NSVAHAYKVFL-------KFKDCISLSSQI--------- 214
+A+++ ++ A AY + +++ L +++
Sbjct: 170 GNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPD 229
Query: 215 ---FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
+ LI +CK + D A + + EM ++G P YT I + + + +
Sbjct: 230 TVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFE 289
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
EM+ C+P V T T ++ L KA +I EA Y +M+ + C DT +++I L KA
Sbjct: 290 EMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAG 349
Query: 332 RF-------------------LIYNTMISSAC-VRSEEGNALKLRQKIEEDSCKPDCETH 371
R + YNT+I + +S ++++ P T+
Sbjct: 350 RLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTY 409
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
+ + C R++ M+ L+ EM KG P + + L + L K
Sbjct: 410 SILIDGFCKTNRIEKAMM---LLEEMDEKGFPPCPAAYCSLIDALGK 453
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 123/269 (45%), Gaps = 27/269 (10%)
Query: 68 ESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQ--TG 125
+ LKL E+ +S H + +V + I++ + S +V E F+W + +G
Sbjct: 353 DGLKLFEEMGVS-HCIP-----NVVTYNTIIKALFESKSRVSEV-----FSWFERMKGSG 401
Query: 126 YMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
+P TY+ +++ K+ + L++E+DE G+ A A L+
Sbjct: 402 ISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDE--KGFPPCPA-----------AYCSLI 448
Query: 186 DTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
D L K A ++F + K +C S S++++ V+I K + D A EM + G +
Sbjct: 449 DALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCT 508
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P+ +Y + R + T+++MQE GC P + + I+++ L K + A+++
Sbjct: 509 PNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEM 568
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
MK+ D Y++++ LS A F
Sbjct: 569 LTNMKNSTIKPDAVSYNTVLSALSHAGMF 597
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 113/245 (46%), Gaps = 31/245 (12%)
Query: 130 PETY--NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT 187
P+T N M+ LGK+ + +L +E+ +S+ ++ +T+++ L
Sbjct: 333 PDTVVMNNMINFLGKAGRLDDGLKLFEEMG-VSHCIPNVVTYNTIIKAL----------- 380
Query: 188 LVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
++ V+ + F + K IS S + +LI G+CKT + + A ++EM + GF P
Sbjct: 381 FESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPC 440
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
+Y I+ + K + +E++E S +++ L KA ++ +A+ +++
Sbjct: 441 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFD 500
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
+M C + Y++L+ L++A C+ E AL +K++E C P
Sbjct: 501 EMSKLGCTPNVYAYNALMSGLARA-------------CMLDE---ALTTMRKMQEHGCLP 544
Query: 367 DCETH 371
D ++
Sbjct: 545 DINSY 549
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 14/208 (6%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G+ P Y ++++ALGK+K++ L EL +E+ E + G S R +
Sbjct: 434 EKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE-NCGSSS------------ARVYA 480
Query: 183 VLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
V++ L K + A +F + K + + ++ L+ G + D A M++M +H
Sbjct: 481 VMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEH 540
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD SY + + + L M+ KP ++ V+ AL A EA
Sbjct: 541 GCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEA 600
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSK 329
++ ++M + D YSS++ + K
Sbjct: 601 AELMKEMNALGFEYDLITYSSILEAIGK 628
>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 584
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 109/227 (48%), Gaps = 22/227 (9%)
Query: 206 DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
D I+ + ++ LI G+C RK A +++ G SP V+Y + +C++ D
Sbjct: 332 DGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSG 391
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
+KEM+E+G KPS +T TI++ ++ + +A+++ M+ D YS LI
Sbjct: 392 AGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIH 451
Query: 326 I------LSKAVRF-------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
+++A R +IYNTM+ C AL+L +++EE P
Sbjct: 452 GFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPP 511
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
+ ++ +++ C +++ K+ L+ +M+ GI P +S +++
Sbjct: 512 NVASYRYMIEVLCKERKSKEAE---GLVEKMIDSGIGPSDSILNLIS 555
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 111/256 (43%), Gaps = 22/256 (8%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ +V +S + F + K + L F ++I G C+ + + + + E+ + GF
Sbjct: 135 LLTFVVGSSSFNQWWCFFNESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGF 194
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
SP+ V YT I+ C++ + K EM + G + T T+++H L K + +
Sbjct: 195 SPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFE 254
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSAC 344
+YEKM+ + Y+ ++ L K R + YNT+I C
Sbjct: 255 MYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLC 314
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ A ++ +++ D P+ T+ + C +++ L+L R++ S+G+ P
Sbjct: 315 REMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGK---ALSLCRDLKSRGLSP 371
Query: 405 QESTHKMLAEELEKKS 420
T+ +L KK
Sbjct: 372 SLVTYNILVSGFCKKG 387
>gi|226495005|ref|NP_001148062.1| GTP binding protein [Zea mays]
gi|195615570|gb|ACG29615.1| GTP binding protein [Zea mays]
Length = 535
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/364 (22%), Positives = 146/364 (40%), Gaps = 49/364 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR- 175
F WA T GY H Y M++ LG+ KK M +L EI E V M V+
Sbjct: 131 FNWAATLPGYAHGSRAYTEMLDILGRMKKVRHMRQLFDEIPEERRQVVVTNKMFAVLLNR 190
Query: 176 -----------------------LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS 212
LD +L+ +L + V A +F + KD +
Sbjct: 191 YAGAHKVQEAIEVFYLRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFREKKDEFPHVT 250
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
+ ++++++GWC AQ+ ++ D ++ FI + K+
Sbjct: 251 KSWNIILNGWCVKGSLRDAQRIWNDIIASKVERDLFTFGTFINALAKNGRISAAVKLFKQ 310
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M EKG P V C ++ L K+I EAL+++ +M C D + Y++LI + K R
Sbjct: 311 MWEKGINPDVAICNCIIDQLCFKKKIPEALEIFGEMNDRLCQADVATYNTLIKYMCKIKR 370
Query: 333 ----FLIYNTMISSAC------------VRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+ + + M + C + + + L Q++E CK D + + L
Sbjct: 371 MEKVYELLDDMEAKGCSPNNRTYSYILKTTEKPKDVIALMQRMERSGCKLDSDMYNLILN 430
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436
+ K + + GM + EM +G P + + ++ L +++ ++DE L + T
Sbjct: 431 LYI-KWKYEKGM--QQIWDEMERRGSGPDQRSFTIMVHGL------HSQGKLDEALQYYT 481
Query: 437 EQRT 440
++
Sbjct: 482 TMKS 485
>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
Length = 757
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 131/288 (45%), Gaps = 36/288 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++++L K L+KE++ VS A + + + L+D K
Sbjct: 443 TYNMLIDSLCFRGKLQEALNLLKEME------VSGCARNVI-------TYNTLIDGFCKN 489
Query: 192 NSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+A A ++F + + +S +S ++ LI G CK+ + + A + M +M G PD +Y
Sbjct: 490 KRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTY 549
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ ++C+ D +K ++ M GC+P ++T ++ L KA ++ A K+ ++
Sbjct: 550 NSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQM 609
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
I + A YN +I + R A++L +++ E + PD T
Sbjct: 610 KG-----------INLTPHA-----YNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVT 653
Query: 371 HARSLKMCCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLAEEL 416
+ + C G + ++ + EML +G VP+ S+ MLAE L
Sbjct: 654 YKIVFRGLCQ----GGGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGL 697
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 126/294 (42%), Gaps = 42/294 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR---LDTRAMSVLMDTL 188
TYN+++ L K + E+DE ++ ++ ++ R +T + ++ TL
Sbjct: 338 TYNSLISGLCK----------LGEVDE------AVKVLNQMIERDCSPNTVTYNTIISTL 381
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQ-IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
K N V A K+ L L ++ LI G C +R A + KEM G PD
Sbjct: 382 CKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDE 441
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+Y I+ C ++ LKEM+ GC +VIT ++ K K+I EA +++++
Sbjct: 442 FTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQ 501
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSE 348
M+ ++ Y++LI L K+ R YN++++ C +
Sbjct: 502 MELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGD 561
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
A + Q + D C+PD T+ + C R++ L+R + KGI
Sbjct: 562 IKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAAT---KLLRTIQMKGI 612
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 97/218 (44%), Gaps = 20/218 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F++L++G KT +A + M M + GF PD +Y I C+ + + L +M
Sbjct: 304 FNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMI 363
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
E+ C P+ +T ++ L K Q+ EA K+ + L D
Sbjct: 364 ERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVC---------------- 407
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN++I C+ A++L ++++ C PD T+ + C + ++++ LNL+
Sbjct: 408 TYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEA---LNLL 464
Query: 395 REMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
+EM G T+ L + + K + A+E D++
Sbjct: 465 KEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQM 502
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/348 (22%), Positives = 143/348 (41%), Gaps = 55/348 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE-------IDELS-----NGYV 164
F WA Q + + + ++ LGK+ +F M +++KE ID S Y
Sbjct: 76 FYWASKQPNFKPSSSIFKEVLHKLGKAGEFDAMKDILKEMKISLSVIDNDSLLVFIESYA 135
Query: 165 SLAAMSTVMRRLD-----------TRAMSVLMDTLVKRN-----SVAHAYKVFLKFKDCI 208
S + +++ +D T + L++ LV N +AH+ V + +
Sbjct: 136 SFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDV 195
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
S F++LI C+ + A M+EM G PD ++T ++ + E +
Sbjct: 196 S----TFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMR 251
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK-SDDCLTDTSFYSSLIFIL 327
++M E GC + +T ++++ K +I EAL+ E+M + D ++ L+ L
Sbjct: 252 VKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGL 311
Query: 328 SKAVR-------------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
SK YN++IS C E A+K+ ++ E C P+
Sbjct: 312 SKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNT 371
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
T+ + C + ++++ L + KGI+P T+ L + L
Sbjct: 372 VTYNTIISTLCKENQVEEAT---KLALVLTGKGILPDVCTYNSLIQGL 416
>gi|218202055|gb|EEC84482.1| hypothetical protein OsI_31142 [Oryza sativa Indica Group]
Length = 586
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 141/343 (41%), Gaps = 43/343 (12%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI--DELSNGYVSLAAMSTVMR 174
F +A G+ H P++ + +L ++ F L+ L+ ++ LS G L +
Sbjct: 116 FLFAGELPGFSHHPDSLLVLANSLAGARLFPLLRSLLSDLPPSALSRGLFPLLFRAYSRA 175
Query: 175 RLDTRAMSV------------------LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD 216
RL A+ L+ L + V + + F + +S++ +
Sbjct: 176 RLPEDAIRAFSSMAGFGFPPTIADFHSLLFALSRNGLVEYGERFFRESSAQFDVSAKAYT 235
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
+LI GW +K + A+ EM + G D Y I+ CR D L MQ+
Sbjct: 236 ILISGWAVVKKPENARSLFDEMVERGVELDVHVYNALIDALCRGGDITSAQEQLSNMQKS 295
Query: 277 -GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------SK 329
G P+ T +HA +K + AL+V ++M + + Y+++I +L ++
Sbjct: 296 HGLVPNAATYGPFLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDLGEINE 355
Query: 330 AVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
A L YNT++++ C E AL+L +++++ C PD ++ LK
Sbjct: 356 AYNILDEITTQGEKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNMLLK 415
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
M R + V + M + +G P +T+ ++ L K
Sbjct: 416 MLIGVGRFDTAIEVWDGMEK---RGFHPGAATYAVMIHGLASK 455
>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
Length = 745
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQK 233
R D ++++D VK V A +++ + +D I+ S F+ LI+G+CK RK A++
Sbjct: 428 RPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARR 487
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
++ + HG P V+YT + YC E + K+ L EM K +P+V+T T+V+ L
Sbjct: 488 LLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLC 547
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
K +++ E++++ E M++ D Y+++I KA
Sbjct: 548 KQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKA 584
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 140/325 (43%), Gaps = 43/325 (13%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+TYN+++ L + +MW++ +I + R S+++D L
Sbjct: 119 QTYNSLLYNLRHTD---IMWDVYNDIKDSGTPQ-------------SARTSSIIVDGLCG 162
Query: 191 RNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
++ A +FL+ D + + F+ ++ +CK +D A+ M ++G PD
Sbjct: 163 QSRFRDAV-LFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTY 221
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
SY I + +M+++G +P ++T IV + A ++ +KM
Sbjct: 222 SYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKM 281
Query: 309 KSDDCL-TDTSFYSSLIF-----------------ILSKAVRF--LIYNTMISSACVRSE 348
+D+ L D Y+ LI +LS + ++Y+ ++SS C R +
Sbjct: 282 LTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQ 341
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
AL+L ++E ++ +PD T++ + C + +++ + L +EM I P
Sbjct: 342 VDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQA---IQLYKEMCFNRIFPNSFA 398
Query: 409 HKMLAEEL-EKKSLGNAKERIDELL 432
H + + L EK L +A+ D L+
Sbjct: 399 HSGILKGLCEKGMLSDARMYFDSLI 423
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 131/303 (43%), Gaps = 62/303 (20%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQK 233
+L+ SVL+ +L KR V A ++ + + + + + +LIHG CK K A +
Sbjct: 323 QLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQ 382
Query: 234 AMKEM-----FQHGFS------------------------------PDGVSYTCFIEHYC 258
KEM F + F+ PD Y I+ Y
Sbjct: 383 LYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYV 442
Query: 259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318
+ D + K +++K PS++T +++ K +++ EA ++ E +K
Sbjct: 443 KLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIK--------- 493
Query: 319 FYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK---PDCETHARSL 375
L + AV Y T++++ C EEGN KL + + E + K P T+ +
Sbjct: 494 ----LHGLEPSAV---TYTTLMNAYC---EEGNINKLHELLLEMNLKDIEPTVVTYTVVI 543
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTH 434
K C ++++++ + L+ +M +KG+ P + T+ + + + K + A E +D++L H
Sbjct: 544 KGLCKQRKLEES---VQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIH 600
Query: 435 ATE 437
E
Sbjct: 601 NLE 603
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/217 (18%), Positives = 94/217 (43%), Gaps = 22/217 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ VLI G C+ + A + +++ GF + + Y+ + C+ + L EM+
Sbjct: 294 YTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEME 353
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILS 328
+P ++T +I++H L K ++ +A+++Y++M + ++ +S ++ +LS
Sbjct: 354 ANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLS 413
Query: 329 KAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
A + +YN MI + A++L +++ + + P T +
Sbjct: 414 DARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLI 473
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C +++ + L+ + G+ P T+ L
Sbjct: 474 YGFCKNRKVVEAR---RLLESIKLHGLEPSAVTYTTL 507
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/199 (19%), Positives = 93/199 (46%), Gaps = 22/199 (11%)
Query: 231 AQKAMKEMF-QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
A++ +++M G PD V+YT I +C+ + + +++ G + +VI ++++
Sbjct: 274 AREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLL 333
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE 349
+L K Q+ EAL++ +M++++ D + Y+ +I C + +
Sbjct: 334 SSLCKRGQVDEALQLLYEMEANNLQPD----------------LVTYSILIHGLCKQGKV 377
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
A++L +++ + P+ H+ LK C K + D + + ++ + P + +
Sbjct: 378 QQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFD---SLIMSNLRPDVTLY 434
Query: 410 KMLAEELEKKSLGNAKERI 428
++ + K LG+ +E +
Sbjct: 435 NIMIDGYVK--LGDVEEAV 451
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++VLI G C+ + A + + + + V+YT I+ +C + D ++ +M
Sbjct: 609 YNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMV 668
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
EKG + S+ + V++ L K I EA + M SD D + ++ +A
Sbjct: 669 EKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRA 724
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 1/128 (0%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+VL+D L + V A +V + +D I+L+ + +I C + A K +M +
Sbjct: 610 NVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVE 669
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
GF Y+ I C+ + Y M G P ++++A +A ++
Sbjct: 670 KGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGHVHS 729
Query: 301 ALKVYEKM 308
++ M
Sbjct: 730 VFELLAVM 737
>gi|226509960|ref|NP_001150456.1| LOC100284086 [Zea mays]
gi|195639404|gb|ACG39170.1| ATP binding protein [Zea mays]
Length = 634
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 133/314 (42%), Gaps = 37/314 (11%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA G+ HT TY M+ LGK+++F M +++E+ + L
Sbjct: 215 FRWATVSGGFTHTTITYCKMLHILGKTRQFESMVAMIQEMGKAG--------------AL 260
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
A V + + + +A VF L K+ + F+ L+ K A++
Sbjct: 261 SMDAFKVAIKSFAAAGEIKNAVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVF 320
Query: 236 KEMFQHG-FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+M HG +SPD SYT + +C ++ + EM EKG P V+ ++ L +
Sbjct: 321 DKM--HGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLR 378
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
++ EA+K++E MK+ + Y +I C + + A++
Sbjct: 379 GQRRPEAVKMFELMKAKGPPPNV----------------WTYTMLIRDHCKQGKMDMAME 422
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
++++E C+PD T+ L + K+M V ++ EM KG P T+ L +
Sbjct: 423 CFEEMQEAKCQPDVATYTCLLVGYGNAKQMDR---VTAVLEEMTQKGCPPDARTYNALIK 479
Query: 415 ELEKKSLGNAKERI 428
L +++ + RI
Sbjct: 480 LLTNRNMPDDAARI 493
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +LI CK K D A + +EM + PD +YTC + Y K +V L+EM
Sbjct: 404 YTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMT 463
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+KGC P T ++ L +A ++Y+KM
Sbjct: 464 QKGCPPDARTYNALIKLLTNRNMPDDAARIYKKM 497
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 101/267 (37%), Gaps = 40/267 (14%)
Query: 47 KFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDV----DKVSEILR-KR 101
K SPD + +W + L E R+ + L + + DV + +LR +R
Sbjct: 322 KMHGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQR 381
Query: 102 YPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE--- 158
P EA+K F AK G TY ++ K K + E +E+ E
Sbjct: 382 RP------EAVKMFELMKAK---GPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKC 432
Query: 159 ---------LSNGYVSLAAMSTVMRRL----------DTRAMSVLMDTLVKRNSVAHAYK 199
L GY + M V L D R + L+ L RN A +
Sbjct: 433 QPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAAR 492
Query: 200 VFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQ--KAMKEMFQHGFSPDGVSYTCFIEH 256
++ K K + + +++++ + S+YA +EM Q G PD SYT FI
Sbjct: 493 IYKKMIKKGLEPTIHTYNMMMKSYF-VGDSNYAMGCAVWEEMHQRGICPDVNSYTVFINR 551
Query: 257 YCREKDFRKVDYTLKEMQEKGCKPSVI 283
+ R + ++EM KG K I
Sbjct: 552 HIRHGRPEEAYKYIEEMINKGMKAPQI 578
>gi|413945076|gb|AFW77725.1| ATP binding protein isoform 1 [Zea mays]
gi|413945077|gb|AFW77726.1| ATP binding protein isoform 2 [Zea mays]
gi|413945078|gb|AFW77727.1| ATP binding protein isoform 3 [Zea mays]
Length = 634
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 132/314 (42%), Gaps = 37/314 (11%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA G+ HT TY M+ LGK+++F M +++E+ + L
Sbjct: 215 FRWATVSGGFTHTTITYCKMLHILGKTRQFESMVAMIQEMGKAG--------------AL 260
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
A V + + + +A VF L K+ + F+ L+ K A++
Sbjct: 261 SMDAFKVAIKSFAAAGEIKNAVGVFELMRKNGFDDGVESFNCLLVALAKEGLGREARQVF 320
Query: 236 KEMFQHG-FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+M HG +SPD SYT + +C ++ + EM EKG P V+ ++ L +
Sbjct: 321 DKM--HGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLR 378
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
++ EA+K++E MK+ Y +I C + + A++
Sbjct: 379 GQRRPEAVKMFELMKAK----------------GPPPNVWTYTMLIRDHCKQGKMDMAME 422
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
++++E C+PD T+ L + K+M V ++ EM KG P T+ L +
Sbjct: 423 CFEEMQEAKCQPDVATYTCLLVGYGNAKQMDR---VTAVLEEMTQKGCPPDARTYNALIK 479
Query: 415 ELEKKSLGNAKERI 428
L +++ + RI
Sbjct: 480 LLTNRNMPDDAARI 493
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +LI CK K D A + +EM + PD +YTC + Y K +V L+EM
Sbjct: 404 YTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMT 463
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+KGC P T ++ L +A ++Y+KM
Sbjct: 464 QKGCPPDARTYNALIKLLTNRNMPDDAARIYKKM 497
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 101/267 (37%), Gaps = 40/267 (14%)
Query: 47 KFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDV----DKVSEILR-KR 101
K SPD + +W + L E R+ + L + + DV + +LR +R
Sbjct: 322 KMHGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQR 381
Query: 102 YPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE--- 158
P EA+K F AK G TY ++ K K + E +E+ E
Sbjct: 382 RP------EAVKMFELMKAK---GPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKC 432
Query: 159 ---------LSNGYVSLAAMSTVMRRL----------DTRAMSVLMDTLVKRNSVAHAYK 199
L GY + M V L D R + L+ L RN A +
Sbjct: 433 QPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMPDDAAR 492
Query: 200 VFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQ--KAMKEMFQHGFSPDGVSYTCFIEH 256
++ K K + + +++++ + S+YA +EM Q G PD SYT FI
Sbjct: 493 IYKKMIKKGLEPTIHTYNMMMKSYF-VGDSNYAMGCAVWEEMHQRGICPDVNSYTVFING 551
Query: 257 YCREKDFRKVDYTLKEMQEKGCKPSVI 283
+ R + ++EM KG K I
Sbjct: 552 HIRHGRPEEAYKYIEEMINKGMKAPQI 578
>gi|297839201|ref|XP_002887482.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333323|gb|EFH63741.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 490
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 125/310 (40%), Gaps = 49/310 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALG----KSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
FTWA Q Y H P YN M++ L K+K+F ++ +++ + V + +
Sbjct: 44 FTWAGHQEHYSHEPIAYNEMIDILSSTKYKNKQFRIVIDMLDYMKRNKKTVVPADILLEI 103
Query: 173 MRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209
+R+ + A ++L+D L K V + + + +
Sbjct: 104 LRKYCERYLTHVQKFAKRKRIRVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVK 163
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+ F+VL GWC+ R A K ++EM Q G P+ +Y I+ +C+ +
Sbjct: 164 PDATTFNVLFFGWCRVRDPKKAMKLLEEMIQAGHKPENFTYCAAIDTFCQAGMVDEAADL 223
Query: 270 LKEMQEKG---CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-- 324
+ M KG P+ T +++ AL K + E ++ +M S CL D S Y +I
Sbjct: 224 FEFMITKGSVVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEG 283
Query: 325 ----FILSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
+ +A +FL YN + C + ALKL ++ E C P
Sbjct: 284 MCMAGKVEEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKSDEALKLYGRMVESRCAPS 343
Query: 368 CETHARSLKM 377
+T+ + M
Sbjct: 344 VQTYNMLISM 353
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 23/209 (11%)
Query: 123 QTGYMHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRA 180
Q G H PE TY A ++ ++ G+ +DE ++ + + +V+ +
Sbjct: 194 QAG--HKPENFTYCAAIDTFCQA---GM-------VDEAADLFEFMITKGSVVSAPTAKT 241
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
++++ L K + +++ + C+ S DV I G C K + A K + EM
Sbjct: 242 FALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDV-IEGMCMAGKVEEAYKFLDEM 300
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK---EMQEKGCKPSVITCTIVMHALEKA 295
G+ PD V+Y CF+ C RK D LK M E C PSV T +++ +
Sbjct: 301 SNKGYPPDIVTYNCFLRVLCEN---RKSDEALKLYGRMVESRCAPSVQTYNMLISMFFEM 357
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
A +++M DC+ D Y +I
Sbjct: 358 DDPDGAFNTWKEMDERDCVQDIETYCVMI 386
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 22/221 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ +++G CK K + A+K EM + G +PDGVSY + YC+ + EM
Sbjct: 263 FNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMT 322
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
+KG P V+T T ++H + KA + A+ + +M+ + +++LI K
Sbjct: 323 QKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLD 382
Query: 330 ----AVR----------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
AVR + YN +I+ C+ A +L ++E KPD T++ +
Sbjct: 383 DALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTII 442
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C + D L ++ML KG++P T+ L L
Sbjct: 443 SAYC---KNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVL 480
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 110/283 (38%), Gaps = 42/283 (14%)
Query: 132 TYNAMVEALGKSKKF----GLMWELVKE--------IDELSNGYVS----------LAAM 169
T+N+MV + K+ K + E+V+E + L GY A M
Sbjct: 262 TFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEM 321
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKS 228
+ D + L+ + K ++ A + + ++ + ++ F LI G+CK
Sbjct: 322 TQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFL 381
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A A++ M Q P V Y I YC + L EM+ KG KP V+T + +
Sbjct: 382 DDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTI 441
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--------------- 333
+ A K + A ++ ++M L D YSSLI +L R
Sbjct: 442 ISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGL 501
Query: 334 ----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
Y ++I C +AL L K+ + PD T++
Sbjct: 502 QPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYS 544
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/218 (19%), Positives = 91/218 (41%), Gaps = 19/218 (8%)
Query: 204 FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263
D ++ + +++L+ C A +++M G P+ V+Y + + R +
Sbjct: 182 LSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEV 241
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+ + M+E G KP+++T +++ + KA ++ +A KV+++M + D
Sbjct: 242 DGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDG------ 295
Query: 324 IFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+ YNT++ C AL + ++ + PD T + + C
Sbjct: 296 ----------VSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGN 345
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
++ + L+R+M +G+ E T L + KK
Sbjct: 346 LER---AVTLVRQMRERGLQMNEVTFTALIDGFCKKGF 380
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/330 (22%), Positives = 120/330 (36%), Gaps = 72/330 (21%)
Query: 110 EALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAM 169
EAL F TQ G M T+ +++ + K+ LV+++ E
Sbjct: 313 EALSVFA---EMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERG--------- 360
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKS 228
+++ + L+D K+ + A K C I S ++ LI+G+C +
Sbjct: 361 ----LQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRM 416
Query: 229 DYAQKAMKEM-----------------------------------FQHGFSPDGVSYTCF 253
D A++ + EM + G PD ++Y+
Sbjct: 417 DEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSL 476
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I C EK K M + G +P T T ++ K + AL +++KM
Sbjct: 477 IRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGV 536
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
L D YS LI LSK+ R + A +L K+ + P T
Sbjct: 537 LPDVVTYSVLINGLSKSARAM----------------EAQQLLFKLYHEDPIP-ANTKYD 579
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
+L CC K +K VL L++ KG++
Sbjct: 580 ALMHCCRKAELKS---VLALLKGFCMKGLM 606
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 18/165 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIH-------------- 220
D SVL++ L K A ++ K +D I +++ +D L+H
Sbjct: 539 DVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTK-YDALMHCCRKAELKSVLALL 597
Query: 221 -GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
G+C + A K + M ++ DG Y+ I +CR + K K+M + G
Sbjct: 598 KGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFA 657
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
P+ + ++ L + + EA +V +++ + L D +LI
Sbjct: 658 PNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALI 702
>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 739
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 22/221 (9%)
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
+ + LI+ +C +++ + + + GF+PD +YT F+ YCR
Sbjct: 73 RTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVL 132
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M +GC + T T ++H L A + EA+ V+ M++D C D Y++++ L A R
Sbjct: 133 MPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGR 192
Query: 333 -------------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
++YN +I C + A+ + ++++ + C P+ T+
Sbjct: 193 TREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTE 252
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ C +++ M+ L M+ G+VP T+ L +
Sbjct: 253 LISGFCKSRKLDRAMM---LFSRMVDAGLVPNVVTYTALIQ 290
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 118/263 (44%), Gaps = 23/263 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ L+D + A VF + C S + + + LI G+CK+RK D A M
Sbjct: 216 NALIDGYCNVGDLELAVDVFERMDVNGC-SPNVRTYTELISGFCKSRKLDRAMMLFSRMV 274
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G P+ V+YT I+ C + L+ M+ G P+ TC++++ AL K +++
Sbjct: 275 DAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVG 334
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
EA + + + Y+SLI L KA RF A +L Q +
Sbjct: 335 EAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRF----------------AAADRLMQTL 378
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
PD T++ + C +K + + MLVL+ +M+ KG+ P T+ ++ +EL ++
Sbjct: 379 VSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLD---DMMEKGVQPSPVTYTIIIDELVRE 435
Query: 420 SLGNAKERI-DELLTHATEQRTF 441
+ ++I D+++ + F
Sbjct: 436 VGADGSKKILDKMIAAGIKPDVF 458
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
SVL+D L K V A + + I ++ ++ LI G CK + A + M+ +
Sbjct: 321 SVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVS 380
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
GF PD +Y+ I+ CR+K+ + L +M EKG +PS +T TI++ L +
Sbjct: 381 QGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADG 440
Query: 301 ALKVYEKMKS----DDCLTDTSFYSS-------------LIFILSKAV--RFLIYNTMIS 341
+ K+ +KM + D T T F S ++ ++ V + YN +I
Sbjct: 441 SKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALIC 500
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
A + + + CKP+ E++ L++ K+
Sbjct: 501 GYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKE 541
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 102/253 (40%), Gaps = 20/253 (7%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L+ L V A VF + D + ++ ++HG C ++ A+ + +
Sbjct: 146 TALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMA 205
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
GF P+ V Y I+ YC D + M GC P+V T T ++ K++++
Sbjct: 206 EGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDR 265
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A+ ++ +M D +++ Y +I C + A +L Q +E
Sbjct: 266 AMMLFSRM------VDAGLVPNVV----------TYTALIQGQCSDGQLDCAYRLLQSME 309
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
P+ T + + C +R+ + L+L ++ KGI E + L + L K
Sbjct: 310 NSGLVPNEWTCSVLIDALCKHERVGEAQLLLG---SLIQKGIKVNEIVYTSLIDGLCKAG 366
Query: 421 LGNAKERIDELLT 433
A +R+ + L
Sbjct: 367 RFAAADRLMQTLV 379
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/348 (18%), Positives = 139/348 (39%), Gaps = 53/348 (15%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
Q G Y ++++ L K+ +F L++ + +S G+V D S
Sbjct: 345 QKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTL--VSQGFVP-----------DAHTYS 391
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+D L ++ ++ A V + + S + ++I + +D ++K + +M
Sbjct: 392 SLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAA 451
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD +YT F+ YC E ++ + M + G P+++T ++ +A
Sbjct: 452 GIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQA 511
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSK------------------AVRFL--------- 334
++ M ++ C + Y+ L+ +L K +++L
Sbjct: 512 FSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVK 571
Query: 335 --------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
IYN ++S C A L +++ + P + + + CC K + +
Sbjct: 572 LQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTE 631
Query: 387 GMLVLNLMREMLSKGIVPQ-ESTHKMLAEELEKKSLGNAKERIDELLT 433
L + M+ G +PQ ES +++ E+ S+ AK+ ++L+
Sbjct: 632 A---LTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLS 676
>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 156/342 (45%), Gaps = 53/342 (15%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDEL-SNG--------YVSLAAMSTVMRRLD 177
TP+ TYN +V + K G + E +K ++++ S+G + L +M + R +D
Sbjct: 271 TPDVVTYNVLVNGICKE---GRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMD 327
Query: 178 TRAM----------------SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIH 220
+ ++L++ L ++ + A + K K +S ++ L+H
Sbjct: 328 AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLH 387
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G+CK +K D A + ++ M G PD V+Y + C++ L ++ KGC P
Sbjct: 388 GFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSP 447
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340
+IT V+ L KA + +A+K+ ++M++ D DT YSSL+ LS+
Sbjct: 448 VLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSR----------- 496
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCET-HARSLKMCCHKKRMKDGMLVLNLMREMLS 399
+ A+K + E +P+ T ++ L +C K R D ++ + M++
Sbjct: 497 -----EGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLC--KTRQTD--RAIDFLVYMIN 547
Query: 400 KGIVPQESTHKMLAEELEKKSLGN-AKERIDELLTHATEQRT 440
+G P E+++ +L E L + + A E ++EL +R+
Sbjct: 548 RGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGLMKRS 589
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 136/326 (41%), Gaps = 40/326 (12%)
Query: 141 GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKV 200
G+++KF + + NG+ S A S V+ +++ + LV+ + +K
Sbjct: 70 GRAQKFDTLAS--GHSNSNGNGHFSSANSSFVLEDVESNNH---LRQLVRTGELEEGFK- 123
Query: 201 FLKFKDCISLSSQIFDV-----LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255
F + + + D+ LI G+C+ K+ A K ++ + G PD ++Y I
Sbjct: 124 ---FLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMIS 180
Query: 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315
YC+ + L M P V+T ++ +L + ++ +A++V ++M DC
Sbjct: 181 GYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYP 237
Query: 316 DTSFYSSLIFI------LSKAVRFL-------------IYNTMISSACVRSEEGNALKLR 356
D Y+ LI + +A++ L YN +++ C A+K
Sbjct: 238 DVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFL 297
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ C+P+ TH L+ C R D L+ +ML KG P T +L L
Sbjct: 298 NDMPSSGCQPNVITHNIILRSMCSTGRWMDAE---KLLADMLRKGFSPSVVTFNILINFL 354
Query: 417 EKKS-LGNAKERIDELLTHATEQRTF 441
+K LG A + ++++ H + +
Sbjct: 355 CRKGLLGRAIDILEKMPKHGCQPNSL 380
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 115/261 (44%), Gaps = 28/261 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKA 234
D +V++ K + +A V D +S+S + ++ ++ C + K A +
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVL----DRMSVSPDVVTYNTILRSLCDSGKLKQAMEV 226
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ M Q PD ++YT IE CR+ + L EM+++GC P V+T ++++ + K
Sbjct: 227 LDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICK 286
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-------------------I 335
++ EA+K M S C + ++ ++ + R++
Sbjct: 287 EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVT 346
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
+N +I+ C + G A+ + +K+ + C+P+ ++ L C +K+M + +
Sbjct: 347 FNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDR---AIEYLE 403
Query: 396 EMLSKGIVPQESTHKMLAEEL 416
M+S+G P T+ + L
Sbjct: 404 RMVSRGCYPDIVTYNTMLTAL 424
>gi|225430658|ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial [Vitis vinifera]
gi|296085168|emb|CBI28663.3| unnamed protein product [Vitis vinifera]
Length = 454
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/342 (21%), Positives = 138/342 (40%), Gaps = 46/342 (13%)
Query: 92 DKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWE 151
D V +LR P+ E+L+ F WA++ Y T Y +++ L ++K+F MW+
Sbjct: 77 DLVYRVLRS---CPNSGTESLRFF--NWARSHLSYQPTTLEYEELLKTLARTKQFQPMWK 131
Query: 152 LVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211
+ ++ LS VS +++ K V A +VF K K ++
Sbjct: 132 IAHQMQTLSPTVVS-----------------SIIEEFGKHGLVDQAVEVFNKAKSALNCP 174
Query: 212 S--QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
++++ L+ C+ + A ++ M + G +P+ +Y+ + +C ++
Sbjct: 175 QTIEVYNSLLFALCEVKYFHGAYALIRRMIRKGVTPNKQTYSVLVNGWCAAGKMKEAQDF 234
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
L+EM KG P V +++ L A + A ++ KM + C D +S++ + K
Sbjct: 235 LEEMSRKGFNPPVRGRDLLVDGLLNAGYLEAAKEMVRKMTKEGCAPDVETLNSMLEAICK 294
Query: 330 A--VRFLI-----------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
A F I Y MI +AC A ++ + ED +P
Sbjct: 295 AGEAEFCIDIYNDVCRLGVSPNVGTYKIMIPAACKEGRIDEAFRILHRSIEDGHRPFPSL 354
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+A +K C + D + +M KG P + ML
Sbjct: 355 YAPIIKALCRNGQFDDAFCFFS---DMKVKGHPPNRPVYTML 393
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 98/252 (38%), Gaps = 28/252 (11%)
Query: 106 DKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI--------- 156
D+ VE F AK+ T E YN+++ AL + K F + L++ +
Sbjct: 158 DQAVEV-----FNKAKSALNCPQTIEVYNSLLFALCEVKYFHGAYALIRRMIRKGVTPNK 212
Query: 157 ---DELSNGYVSLAAMSTVMRRLD----------TRAMSVLMDTLVKRNSVAHAYKVFLK 203
L NG+ + M L+ R +L+D L+ + A ++ K
Sbjct: 213 QTYSVLVNGWCAAGKMKEAQDFLEEMSRKGFNPPVRGRDLLVDGLLNAGYLEAAKEMVRK 272
Query: 204 F-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
K+ + + + ++ CK ++++ ++ + G SP+ +Y I C+E
Sbjct: 273 MTKEGCAPDVETLNSMLEAICKAGEAEFCIDIYNDVCRLGVSPNVGTYKIMIPAACKEGR 332
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
+ L E G +P ++ AL + Q +A + MK + Y+
Sbjct: 333 IDEAFRILHRSIEDGHRPFPSLYAPIIKALCRNGQFDDAFCFFSDMKVKGHPPNRPVYTM 392
Query: 323 LIFILSKAVRFL 334
LI + + RF+
Sbjct: 393 LITMCGRGGRFV 404
>gi|357454671|ref|XP_003597616.1| hypothetical protein MTR_2g100200 [Medicago truncatula]
gi|124360397|gb|ABN08410.1| Pentatricopeptide repeat [Medicago truncatula]
gi|355486664|gb|AES67867.1| hypothetical protein MTR_2g100200 [Medicago truncatula]
Length = 527
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 132/329 (40%), Gaps = 81/329 (24%)
Query: 110 EALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE-------------- 155
EA+ F F WA Q +Y+ +V+ALG+ K F M +++ E
Sbjct: 117 EAMVMF-FNWALKQPMVPRDVGSYHVIVKALGRRKFFVFMMQVLDEMRLNGIKADLLMLS 175
Query: 156 --IDELSN-GYVS-----LAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC 207
ID N G+VS + + DT ++VL+ L +R V A VF K
Sbjct: 176 IVIDSFVNAGHVSKAIQLFGNLDDLGLCRDTEVLNVLLSCLCRRCHVGAAASVFNSMKGK 235
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+S + ++V++ GW K + + +K MKEM GFSPD + F+E
Sbjct: 236 VSFNVDTYNVVVGGWSKLGRVNEIEKVMKEMEVEGFSPDFNTLAFFLE------------ 283
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
L +A ++ EA++V+ MK D
Sbjct: 284 -----------------------GLGRAGRMDEAVEVFGSMKEKDT-------------- 306
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
IYN MI + + +K + D+C+P+ T++R + +++ D
Sbjct: 307 ------AIYNAMIFNFISIGDFDGFMKYYNGMLSDNCEPNIHTYSRMITAFLRTRKVADA 360
Query: 388 MLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+L+ + EML +G+VP T ++L
Sbjct: 361 LLMFD---EMLRQGVVPPTGTITSFIKQL 386
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 116/306 (37%), Gaps = 37/306 (12%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELS-NGYVSLAAMSTVMRRLDTRAMSVLMDTLV 189
+TYN +V G K G + E+ K + E+ G+ D ++ ++ L
Sbjct: 241 DTYNVVV---GGWSKLGRVNEIEKVMKEMEVEGFSP-----------DFNTLAFFLEGLG 286
Query: 190 KRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ + A +VF K+ + I++ +I + D K M P+ +
Sbjct: 287 RAGRMDEAVEVFGSMKEK---DTAIYNAMIFNFISIGDFDGFMKYYNGMLSDNCEPNIHT 343
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+ I + R + EM +G P T T + L Y A+ +Y+K +
Sbjct: 344 YSRMITAFLRTRKVADALLMFDEMLRQGVVPPTGTITSFIKQLCSYGPPYAAMMIYKKTR 403
Query: 310 SDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
+C Y L+ LSK C G+ L + Q+++E D E
Sbjct: 404 KLECKISMEAYKILLMRLSKF-----------GKC-----GSLLSVWQEMQECGYSSDVE 447
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
+ + + ++++ +LV M E L KG P + L+ +L +L R+
Sbjct: 448 VYEYIISGLYNIGQLENAVLV---MEEALRKGFCPSRLVYSKLSNKLLASNLTERAYRLF 504
Query: 430 ELLTHA 435
+ HA
Sbjct: 505 LKIKHA 510
>gi|242056423|ref|XP_002457357.1| hypothetical protein SORBIDRAFT_03g005950 [Sorghum bicolor]
gi|241929332|gb|EES02477.1| hypothetical protein SORBIDRAFT_03g005950 [Sorghum bicolor]
Length = 543
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 81/364 (22%), Positives = 145/364 (39%), Gaps = 49/364 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE--------------LSNG 162
F WA T GY H Y M++ LG+ KK M +L EI E L N
Sbjct: 139 FNWAATLPGYAHGSRAYTEMLDILGRMKKVRHMRQLFDEIPEERRVVVVTNKMFAVLLNR 198
Query: 163 YVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS 212
Y + + LD +L+ +L + V A +F + KD +
Sbjct: 199 YAGAHKVQEAIEVFYLRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFREKKDEFPHVT 258
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
+ ++++++GWC AQ+ ++ D +Y FI + K+
Sbjct: 259 KSWNIILNGWCVKGSLRDAQRIWNDIIASKVERDLFTYGTFINALAKNGRISAAVKLFKK 318
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M E G P V C ++ L +I EAL+++ +M C D + Y++LI L K R
Sbjct: 319 MWETGINPDVAICNCIIDQLCFKNRIPEALEIFGEMNDRLCQADVATYNTLIKYLCKKKR 378
Query: 333 ----FLIYNTMISSAC------------VRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+ + + M + C + + + L Q++E+ C+ D +T+ L
Sbjct: 379 MEKVYELLDDMEAKGCSPNNRTYSYVLKTTEKPKDVIALMQRMEQTGCELDSDTYNLILN 438
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436
+ + K K V + EM G P + + ++ L +++ ++DE L + T
Sbjct: 439 LYTNWKYEKG---VQQVWDEMERNGSGPDQRSFTIMVHGL------HSQGKLDEALQYYT 489
Query: 437 EQRT 440
++
Sbjct: 490 TMKS 493
>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
Length = 486
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/323 (21%), Positives = 144/323 (44%), Gaps = 42/323 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE-------------IDELS-NG 162
F A Q G+ H+ TY+ ++ LG++++F M L+++ +D + G
Sbjct: 120 FEVASRQPGFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVDIIEIYG 179
Query: 163 YVSLA--AMSTVMRRLD------TRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQ 213
V + A+ + L+ + +VL+ L++ + A +F K + IS +++
Sbjct: 180 EVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTR 239
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+++LI C + K +A +M + G PD +Y+ ++ CR+ + L EM
Sbjct: 240 TYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEM 299
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
KG P +T ++++L + + EA ++ KMK C D
Sbjct: 300 LNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDV---------------- 343
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ YNT+I+ C +A ++ + + E+ C P+ ++ + C++ + + +
Sbjct: 344 INYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAK---DF 400
Query: 394 MREMLSKGIVPQESTHKMLAEEL 416
+ EM+S G +P S + +L L
Sbjct: 401 VEEMISNGFIPHISIYHLLITGL 423
>gi|334183891|ref|NP_177483.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806278|sp|Q9FX35.2|PP117_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g73400, mitochondrial; Flags: Precursor
gi|332197336|gb|AEE35457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 568
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 126/310 (40%), Gaps = 49/310 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALG----KSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
FTWA Q Y H P YN M++ L K+K+F ++ +++ + + V + + +
Sbjct: 146 FTWAGHQEHYSHEPIAYNEMIDILSSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEI 205
Query: 173 MRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209
+R+ + A ++L+D L K V + + + +
Sbjct: 206 LRKYCERYLTHVQKFAKRKRIRVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVK 265
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+ F+VL GWC+ R A K ++EM + G P+ +Y I+ +C+ +
Sbjct: 266 PDANTFNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADL 325
Query: 270 LKEMQEKG---CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
M KG P+ T +++ AL K + E ++ +M S CL D S Y +I
Sbjct: 326 FDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEG 385
Query: 327 L------SKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
+ +A +FL YN + C + ALKL ++ E C P
Sbjct: 386 MCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPS 445
Query: 368 CETHARSLKM 377
+T+ + M
Sbjct: 446 VQTYNMLISM 455
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 21/204 (10%)
Query: 128 HTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
H PE TY A ++ ++ G+ +DE ++ + + + + + ++++
Sbjct: 299 HKPENFTYCAAIDTFCQA---GM-------VDEAADLFDFMITKGSAVSAPTAKTFALMI 348
Query: 186 DTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L K + +++ + C+ S DV I G C K D A K + EM G+
Sbjct: 349 VALAKNDKAEECFELIGRMISTGCLPDVSTYKDV-IEGMCMAEKVDEAYKFLDEMSNKGY 407
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLK---EMQEKGCKPSVITCTIVMHALEKAKQIYE 300
PD V+Y CF+ C RK D LK M E C PSV T +++ +
Sbjct: 408 PPDIVTYNCFLRVLCEN---RKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDG 464
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI 324
A + +M DC+ D Y ++I
Sbjct: 465 AFNTWTEMDKRDCVQDVETYCAMI 488
>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
Length = 628
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 138/345 (40%), Gaps = 26/345 (7%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI-------------------- 156
F W Q GY H+ TYN ++AL K+ L +E +++
Sbjct: 25 FDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLC 84
Query: 157 --DELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
EL L + +L+ SV++D K + V A ++F +
Sbjct: 85 KAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDV 144
Query: 215 --FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
F+ L+ G C + A + M + G P+ +SY+ ++ C+ + +E
Sbjct: 145 VTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEE 204
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M EK C P ++ T + L KA ++ EA KM + D +S++I IL K
Sbjct: 205 MVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGH 264
Query: 333 F-LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
N MI C A K +++ + P E + C KR+ DG+L+
Sbjct: 265 AEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLF 324
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDELLTHA 435
M+ M P T+ ++ + L K K L A+E ++E+ +
Sbjct: 325 QRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYG 369
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 91/209 (43%), Gaps = 19/209 (9%)
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
+ +++++ CK ++ D AQ+ + EM +G SPD V+Y+ ++ C+ + L+E
Sbjct: 340 ETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEE 399
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M ++G P T +++AL KA ++ AL E MK+ D
Sbjct: 400 MSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPD---------------- 443
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
+ YNT++ C A+ K+ C PD ++ + C + +
Sbjct: 444 LVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIF- 502
Query: 393 LMREMLSKGIVPQESTHKMLAEELEKKSL 421
+EM+ +G++P + L + L + L
Sbjct: 503 --QEMVKRGVLPDTVLYHSLLDGLARNGL 529
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 126/312 (40%), Gaps = 38/312 (12%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
ETYN MV+ L K+K+ ELV E M+ D S L+D L K
Sbjct: 340 ETYNIMVDNLCKAKQLDEAQELVNE-------------MANYGLSPDVVTYSALVDGLCK 386
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A + + K+ + S +++ K K DYA ++ M G +PD V+
Sbjct: 387 LGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVT 446
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y ++ C+ + L +M C P V + TI++ AL ++ Q A ++++M
Sbjct: 447 YNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMV 506
Query: 310 SDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
L DT Y SL+ L++ E AL+L ++ CKPD
Sbjct: 507 KRGVLPDTVLYHSLLDGLAR----------------NGLEDLALEL---LKTSLCKPDFV 547
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERI 428
H L C + +D ++ M G T+ + L K + A++ +
Sbjct: 548 MHKMVLDGLCKAGKAED---ACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQLV 604
Query: 429 DELL-THATEQR 439
D+ TH + +R
Sbjct: 605 DDASETHTSVER 616
>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Vitis vinifera]
Length = 879
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 133/329 (40%), Gaps = 37/329 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G++ T ETY A++ K F K ID L L M++ ++ + + +
Sbjct: 269 GFLPTVETYGAIINGFCKKGDF-------KAIDRL------LMEMNSRGLTVNVQVYNTI 315
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D K + A + +C + ++ LI G C+ K A + +++ G
Sbjct: 316 IDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGL 375
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
P+ SYT I YC++ + + L EM E+G KP ++T ++H L A ++ AL
Sbjct: 376 MPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALT 435
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSAC 344
+ EKM D Y+ L+ L K + +Y T++
Sbjct: 436 IREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFI 495
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
A KL + E P + +K C MKD M +N M++ + + P
Sbjct: 496 RNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKK---RHLAP 552
Query: 405 QESTHKMLAEELEKK-SLGNAKERIDELL 432
E T+ + + K+ L A++ E++
Sbjct: 553 DEFTYSTVIDGYVKQHDLDGAQKMFREMV 581
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 108/272 (39%), Gaps = 44/272 (16%)
Query: 159 LSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI---- 214
L +G++ + + + + +V N++ Y F KD ++ +++
Sbjct: 490 LVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRH 549
Query: 215 -------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ +I G+ K D AQK +EM + P+ V+YT I +CR+ D +
Sbjct: 550 LAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSL 609
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+EMQ G P+V+T +I++ + K ++ +A +E+M + C+ + ++ L+
Sbjct: 610 KIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGF 669
Query: 328 SK---------------------------------AVRFLIYNTMISSACVRSEEGNALK 354
SK A R YN+++ C AL+
Sbjct: 670 SKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGWAPRSAAYNSILICLCQYGMFRTALQ 729
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
L K+ C PD + L C + R K+
Sbjct: 730 LSNKMTSKGCIPDSVSFVALLHGVCLEGRSKE 761
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 101/445 (22%), Positives = 175/445 (39%), Gaps = 59/445 (13%)
Query: 33 HCITNELTGLPSWLKFFDTQS------PDEDFVIPSLASWVESLKLNEQSRISSHALSED 86
H + + + + LKFFD S P F SL LKL +SR+ S
Sbjct: 64 HLVLDRIRDVELGLKFFDWVSRGQYSGPINGFAYSSL------LKLLARSRVFSEMEVVL 117
Query: 87 HETDVDKVS------EILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETY--NAMVE 138
V+++S I+ + Y V +AL+ + F KT Y + P+ N+++
Sbjct: 118 ENMRVEEMSPTREAMSIVIQAYSDSGLVEKALELYYFVL-KT---YTYFPDVIACNSLLN 173
Query: 139 ALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAY 198
L K + + +L E+ E+ R +D + +++ L K +
Sbjct: 174 MLVKLGRIEIARKLYDEMLEID---------GAGDRCVDNYSTCIMVKGLCKEGKLEEGR 224
Query: 199 KVFLK--FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256
K+ + CI + ++ LI G+CK + A E+ GF P +Y I
Sbjct: 225 KLIEDRWGQGCIP-NIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIING 283
Query: 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316
+C++ DF+ +D L EM +G +V ++ A K I +A++ E M C D
Sbjct: 284 FCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPD 343
Query: 317 TSFYSSLI------FILSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQ 357
Y++LI +S+A + L Y +I + C + A
Sbjct: 344 IVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLI 403
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
++ E KPD T+ + + + L + +ML +G+ P + +L L
Sbjct: 404 EMTERGHKPDLVTYGALVHGLVVAGEVD---VALTIREKMLERGVFPDAGIYNILMSGLC 460
Query: 418 KK-SLGNAKERIDELLTHATEQRTF 441
KK L AK + E+L + F
Sbjct: 461 KKFKLPAAKLLLAEMLDQSVLPDAF 485
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/320 (20%), Positives = 121/320 (37%), Gaps = 41/320 (12%)
Query: 118 TWAKTQTGYMHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR 175
W T H P+ TY A+V L + E+D V+L ++ R
Sbjct: 400 NWLIEMTERGHKPDLVTYGALVHGL----------VVAGEVD------VALTIREKMLER 443
Query: 176 L---DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ-IFDVLIHGWCKTRKSDYA 231
D ++LM L K+ + A + + D L ++ L+ G+ + D A
Sbjct: 444 GVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEA 503
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
+K + + G +P V Y I+ YC+ + + M+++ P T + V+
Sbjct: 504 RKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDG 563
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN 351
K + A K++ +M C + Y+SL I+ C + +
Sbjct: 564 YVKQHDLDGAQKMFREMVKMKCKPNVVTYTSL----------------INGFCRKGDLHR 607
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
+LK+ ++++ P+ T++ + C + ++ D + EML VP + T
Sbjct: 608 SLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAA---SFFEEMLMNKCVPNDVTFNY 664
Query: 412 LAEELEKKSLGNAKERIDEL 431
L K E+ +E
Sbjct: 665 LVNGFSKNGTRAISEKGNEF 684
>gi|11120809|gb|AAG30989.1|AC012396_25 hypothetical protein [Arabidopsis thaliana]
Length = 466
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 126/310 (40%), Gaps = 49/310 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALG----KSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
FTWA Q Y H P YN M++ L K+K+F ++ +++ + + V + + +
Sbjct: 44 FTWAGHQEHYSHEPIAYNEMIDILSSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEI 103
Query: 173 MRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209
+R+ + A ++L+D L K V + + + +
Sbjct: 104 LRKYCERYLTHVQKFAKRKRIRVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVK 163
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+ F+VL GWC+ R A K ++EM + G P+ +Y I+ +C+ +
Sbjct: 164 PDANTFNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADL 223
Query: 270 LKEMQEKG---CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
M KG P+ T +++ AL K + E ++ +M S CL D S Y +I
Sbjct: 224 FDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEG 283
Query: 327 L------SKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
+ +A +FL YN + C + ALKL ++ E C P
Sbjct: 284 MCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPS 343
Query: 368 CETHARSLKM 377
+T+ + M
Sbjct: 344 VQTYNMLISM 353
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 21/204 (10%)
Query: 128 HTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
H PE TY A ++ ++ G+ +DE ++ + + + + + ++++
Sbjct: 197 HKPENFTYCAAIDTFCQA---GM-------VDEAADLFDFMITKGSAVSAPTAKTFALMI 246
Query: 186 DTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L K + +++ + C+ S DV I G C K D A K + EM G+
Sbjct: 247 VALAKNDKAEECFELIGRMISTGCLPDVSTYKDV-IEGMCMAEKVDEAYKFLDEMSNKGY 305
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLK---EMQEKGCKPSVITCTIVMHALEKAKQIYE 300
PD V+Y CF+ C RK D LK M E C PSV T +++ +
Sbjct: 306 PPDIVTYNCFLRVLCEN---RKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDG 362
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI 324
A + +M DC+ D Y ++I
Sbjct: 363 AFNTWTEMDKRDCVQDVETYCAMI 386
>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 575
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 106/218 (48%), Gaps = 22/218 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G+C K A +++ G SP V+Y + +CR+ D +KEM+
Sbjct: 341 YNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEME 400
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------LS 328
E+G KPS +T TI++ ++ + A+++ M+ + D YS LI ++
Sbjct: 401 ERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMN 460
Query: 329 KAVRF-------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+A R +IYNTMI C AL+L + +EE P+ +++ +
Sbjct: 461 EASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLI 520
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
++ C ++++K+ +L+ +M+ GI P ++ +++
Sbjct: 521 RVLCKERKLKEAE---DLVEKMIDSGIDPSDTICNLIS 555
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ +V +S + F + K + L F ++I G C+ + + + + E+ + GF
Sbjct: 135 LLTFVVGSSSFNQWWCFFNESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGF 194
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
SP+ V YT I+ C++ + K EM + G + T T+++H L K + +
Sbjct: 195 SPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFE 254
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSAC 344
+YEKM+ + Y+ ++ L K R + YNT+I C
Sbjct: 255 MYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLC 314
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ A K+ +++ P+ T+ + C ++ L+L R++ S+G+ P
Sbjct: 315 REMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKA---LSLCRDLKSRGLSP 371
Query: 405 QESTHKMLAEELEKKS 420
T+ +L +K
Sbjct: 372 SLVTYNVLVSGFCRKG 387
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 71/161 (44%), Gaps = 14/161 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY +++ +S +L ++EL G V D SVL+ +
Sbjct: 410 TYTILIDTFARSDNMETAIQLRSSMEEL--GLVP-----------DVHTYSVLIHGFCIK 456
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A ++F + + + I++ +I G+CK S A + ++M + +P+ SY
Sbjct: 457 GQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASY 516
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
+ I C+E+ ++ + +++M + G PS C ++ A
Sbjct: 517 SYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDTICNLISRA 557
>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
Length = 629
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 121/265 (45%), Gaps = 28/265 (10%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY+ +V AL + G+ EL E ++S G+ A M M T+A L D
Sbjct: 320 TYSTLVGALLHTNNVGMAMELFHE--KMSEGHSPDAIMYFTMISGLTQA-GRLEDACSMA 376
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
+S+ A FK L ++ +++LI G+C+ ++ A + ++EM + G PD +Y
Sbjct: 377 SSMKEA-----GFK----LDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYN 427
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ C+ DF VD L +M + GC+PSVIT ++H K +I EAL++ M
Sbjct: 428 TLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDES 487
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+ +IYNT+I C R + A++L +++E S + T
Sbjct: 488 GIHPNN----------------VIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTF 531
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMRE 396
LK K + +++ MRE
Sbjct: 532 NALLKGLRDKNMPEKAFELMDQMRE 556
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 14/195 (7%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G+ + YN ++ + K+ +EL++E+ E V R D +
Sbjct: 381 EAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKE-------------VGIRPDVCTYN 427
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+ K A ++ K D S I F L+HG+CK K D A + ++ M +
Sbjct: 428 TLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDES 487
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G P+ V Y I+ C+ D EM+EK +V T ++ L +A
Sbjct: 488 GIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKA 547
Query: 302 LKVYEKMKSDDCLTD 316
++ ++M+ + C D
Sbjct: 548 FELMDQMREERCFPD 562
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/307 (19%), Positives = 129/307 (42%), Gaps = 41/307 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
+N+++ AL + V+++ ++ Y + ++V R D +L++ L K
Sbjct: 138 AFNSILAALAR----------VRDVPGMARIYALMQGCASV--RPDVVTYGILVNGLCKA 185
Query: 192 NSVAHAYKVF--LKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ--HGFSPD 246
V A +V + +D I + ++ G CK+ + A +++ HG P+
Sbjct: 186 GRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPN 245
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+Y C I+ +CR + +++M+ +G +++T ++ L +A + AL+ +
Sbjct: 246 TVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFR 305
Query: 307 KMKS--DDCLTDTSFYSSLIFIL-------------------SKAVRFLIYNTMISSACV 345
+ ++ + + YS+L+ L + ++Y TMIS
Sbjct: 306 EKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQ 365
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+A + ++E K D + + + C KKR+ + L++EM GI P
Sbjct: 366 AGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHE---AYELLQEMKEVGIRPD 422
Query: 406 ESTHKML 412
T+ L
Sbjct: 423 VCTYNTL 429
>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 630
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 131/288 (45%), Gaps = 36/288 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++++L K L++E++ +S R + T + L+D K
Sbjct: 316 TYNMLIDSLCYRGKLQEALGLLREME-----------ISGCARNVIT--YNTLIDGFCKN 362
Query: 192 NSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A ++F + + +S +S ++ LI G CK+R+ A + M +M G PD +Y
Sbjct: 363 KKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTY 422
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ ++CRE D +K ++ M GC+P ++T ++ L KA ++ A ++ ++
Sbjct: 423 NSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQL 482
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+L+ YN +I + R A++L +++EE PD T
Sbjct: 483 KG------------MVLTPHA----YNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFT 526
Query: 371 HARSLKMCCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLAEEL 416
+ K+ G + ++ + EM+ KG +P+ S+ MLAE L
Sbjct: 527 Y----KIVFRGLSNSGGPIGEAVDFVIEMIEKGFLPEFSSFYMLAEGL 570
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/370 (20%), Positives = 147/370 (39%), Gaps = 68/370 (18%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEID----ELSNG---------- 162
+WA Q + Y ++ LGK F M ++++E+ ++ G
Sbjct: 74 LSWASKQPNFRPNSSIYEEILRKLGKVGSFNSMKDILQEMKGLDCQIDRGVLLIFIDSYA 133
Query: 163 ----YVSLAAMSTVMR-----RLDTRAMSVLMDTLVKRNSV-----AHAYKVFLKFKDCI 208
Y + + VM LDT + L++ LV N + H+ V K +
Sbjct: 134 KFELYEEILCIVEVMEVEFGLALDTLLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDV 193
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
S F++LI CK + A M+EM +G PD ++T ++ + E +
Sbjct: 194 S----TFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFR 249
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL----------------KVYEKMKSDD 312
++M + GC + +T +++H K +I EAL ++Y +MK+
Sbjct: 250 VKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKG 309
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
C D YN +I S C R + AL L +++E C + T+
Sbjct: 310 CQPDE----------------FTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYN 353
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
+ C K++++ + + +M +G+ T+ L + L + + + A + +D++
Sbjct: 354 TLIDGFCKNKKIEEAEEIFD---QMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQM 410
Query: 432 LTHATEQRTF 441
+ + F
Sbjct: 411 IMEGLKPDKF 420
>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
Length = 584
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 133/275 (48%), Gaps = 26/275 (9%)
Query: 165 SLAAMSTVMRRL---DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIH 220
+LA + ++RR D ++L++ KR+ A K+ + +D + ++V+++
Sbjct: 179 ALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVN 238
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G C+ + D A + +K + +G P+ VSY ++ C + + + + EM +KGC P
Sbjct: 239 GICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPP 298
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------LSKAVRFL 334
+V+T +++ L + + AL+V E++ C ++ Y+ L+ + KA+ FL
Sbjct: 299 NVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFL 358
Query: 335 -------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
YNT++++ C E A++L ++++ C P ++ +
Sbjct: 359 DLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKA 418
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ K+ + +LN EM+SKG+ P T+ +A L
Sbjct: 419 GKTKEALELLN---EMVSKGLQPDIITYSTIAAGL 450
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 104/220 (47%), Gaps = 22/220 (10%)
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
D LI G C ++ A + EM + PD V+YT +E C+ +++ L EM++
Sbjct: 164 DTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRD 223
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-- 333
KGC P ++T +V++ + + ++ +A++ + + S C +T Y+ ++ L A R+
Sbjct: 224 KGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWED 283
Query: 334 -----------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+ +N +IS C + AL++ ++I + C P+ ++ L
Sbjct: 284 AEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLH 343
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C +K+M M L+L M+S+G P ++ L L
Sbjct: 344 AFCKQKKMDKAMAFLDL---MVSRGCYPDIVSYNTLLTAL 380
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 21/258 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++L+ L ++ V A +V + K S +S ++ L+H +CK +K D A + M
Sbjct: 304 NMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVS 363
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD VSY + CR + L ++++KGC P +I+ V+ L KA + E
Sbjct: 364 RGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKE 423
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
AL++ +M S D + Y+T+ + C +A++ K++
Sbjct: 424 ALELLNEMVSKGLQPD----------------IITYSTIAAGLCREDRIEDAIRAFGKVQ 467
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ +P+ + + C ++ ++L M+ G +P EST+ +L E L +
Sbjct: 468 DMGIRPNTVLYNAIILGLCKRRETHS---AIDLFAYMIGNGCMPNESTYTILIEGLAYEG 524
Query: 421 L-GNAKERIDELLTHATE 437
L A++ +DEL + E
Sbjct: 525 LIKEARDLLDELCSRGEE 542
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 25/197 (12%)
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD ++Y + YC +VD + E+ + TC ++ L + AL
Sbjct: 125 GPDVMAYNAMMAGYCGAG---QVDAARRWCAERAVERDAYTCDTLIRGLCGRGRTANALA 181
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSK------AVRFL-------------IYNTMISSAC 344
V ++M C+ D Y+ L+ K A++ L YN +++ C
Sbjct: 182 VLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGIC 241
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+A++ + + C+P+ ++ LK C +R +D LM EM KG P
Sbjct: 242 QEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAE---ELMGEMGQKGCPP 298
Query: 405 QESTHKMLAEELEKKSL 421
T ML L +K L
Sbjct: 299 NVVTFNMLISFLCRKGL 315
>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Brachypodium distachyon]
Length = 649
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 133/317 (41%), Gaps = 40/317 (12%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI--------DELSNGYVSLAA 168
F WA + HTP TY M+ LGK+++F M LV+E+ D S AA
Sbjct: 225 FQWAAASDEFEHTPVTYCKMLHILGKARQFETMVALVQEMGKAGALCMDAFKIAIKSFAA 284
Query: 169 MSTV--------MRRL-----DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF 215
+ M R+ + + L+ L + A +VF + +D + + +
Sbjct: 285 AGEIKNAVGVFEMMRVHGFDDGVESFNCLLVALAQEGLGKEAARVFDRMRDQYTPDLRSY 344
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
L+ WC R A + +M + G PD V + I+ R + + + M+
Sbjct: 345 TALMLAWCNARNLVEAGRVWNDMLEKGMKPDVVVHNTMIDGLLRGQRRPEAVKMFELMKA 404
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335
KG P+V T T+++ K ++ A++ +E+M+ C + + Y+ L+ A R
Sbjct: 405 KGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLLVGYGNAKRMDR 464
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
M+ +++ + C PD T+ +K+ ++ D + + +
Sbjct: 465 VTAML----------------EEMAQKGCPPDGRTYNALIKLLTNRNMPDD---AVRIYK 505
Query: 396 EMLSKGIVPQESTHKML 412
+M++KG+ P T+ M+
Sbjct: 506 KMITKGLEPTIHTYNMM 522
>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
Length = 641
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 133/329 (40%), Gaps = 37/329 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G++ T ETY A++ K F K ID L L M++ ++ + + +
Sbjct: 250 GFLPTVETYGAIINGFCKKGDF-------KAIDRL------LMEMNSRGLTVNVQVYNTI 296
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D K + A + +C + ++ LI G C+ K A + +++ G
Sbjct: 297 IDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGL 356
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
P+ SYT I YC++ + + L EM E+G KP ++T ++H L A ++ AL
Sbjct: 357 MPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALT 416
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSAC 344
+ EKM D Y+ L+ L K + +Y T++
Sbjct: 417 IREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFI 476
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
A KL + E P + +K C MKD M +N M++ + + P
Sbjct: 477 RNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKK---RHLAP 533
Query: 405 QESTHKMLAEELEKK-SLGNAKERIDELL 432
E T+ + + K+ L A++ E++
Sbjct: 534 DEFTYSTVIDGYVKQHDLDGAQKMFREMV 562
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 100/247 (40%), Gaps = 23/247 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G+CK + A E+ GF P +Y I +C++ DF+ +D L EM
Sbjct: 223 YNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMN 282
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILS 328
+G +V ++ A K I +A++ E M C D Y++LI +S
Sbjct: 283 SRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVS 342
Query: 329 KAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+A + L Y +I + C + A ++ E KPD T+ +
Sbjct: 343 EADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALV 402
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK-SLGNAKERIDELLTH 434
+ + L + +ML +G+ P + +L L KK L AK + E+L
Sbjct: 403 HGLVVAGEVD---VALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQ 459
Query: 435 ATEQRTF 441
+ F
Sbjct: 460 SVLPDAF 466
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 91/208 (43%), Gaps = 25/208 (12%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
I ++ + +++ G CK K + +K +++ + G P+ + Y I+ YC++ D +
Sbjct: 181 IEIARKFTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMAN 240
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
E++ KG P+V T +++ K ++ +M S
Sbjct: 241 GLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGL-------------- 286
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIE---EDSCKPDCETHARSLKMCCHKKRM 384
V +YNT+I + R + G+ +K + IE E CKPD T+ + C ++
Sbjct: 287 --TVNVQVYNTIIDA---RYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKV 341
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKML 412
+ L+ + L KG++P + ++ L
Sbjct: 342 SEAD---QLLEQALGKGLMPNKFSYTPL 366
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 13/151 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + L+D ++ ++ A K+F L + ++ ++ +I G+CK A +
Sbjct: 464 DAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACI 523
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M + +PD +Y+ I+ Y ++ D +EM + CKP+ VM L+
Sbjct: 524 NRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPN------VMDGLQGL 577
Query: 296 KQIYEALKVYEKMKSDD--CLTDTSFYSSLI 324
I +L + M+ + C+ YSS++
Sbjct: 578 LLIIPSLFAFANMECSELHCIN----YSSIL 604
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 78/202 (38%), Gaps = 22/202 (10%)
Query: 118 TWAKTQTGYMHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR 175
W T H P+ TY A+V L + E+D V+L ++ R
Sbjct: 381 NWLIEMTERGHKPDLVTYGALVHGL----------VVAGEVD------VALTIREKMLER 424
Query: 176 ---LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ-IFDVLIHGWCKTRKSDYA 231
D ++LM L K+ + A + + D L ++ L+ G+ + D A
Sbjct: 425 GVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEA 484
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
+K + + G +P V Y I+ YC+ + + M+++ P T + V+
Sbjct: 485 RKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDG 544
Query: 292 LEKAKQIYEALKVYEKMKSDDC 313
K + A K++ +M C
Sbjct: 545 YVKQHDLDGAQKMFREMVKMKC 566
>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
Length = 502
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 142/335 (42%), Gaps = 58/335 (17%)
Query: 126 YMHTPETYNAMVEALGKSKKFGLMWELV-----KEIDELSNGYVSLAAMSTVMRRLDTRA 180
Y H+ +++ ++ G+ + + +W LV + I S + +A + D RA
Sbjct: 108 YAHSASSFDHAIDIAGRMRDYKTVWALVARMRARRIGPSSKTFAIIAERFVAAGKPD-RA 166
Query: 181 MSV------------------LMDTLVKRNSVAHAYKVFL-----KFK-DCISLSSQIFD 216
+ V ++D L K V AY KFK D +S ++
Sbjct: 167 IKVFLSMREHGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVS-----YN 221
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
++ +GWC +++ A + +KEM + G +P +Y ++ Y R ++ +M+E+
Sbjct: 222 IIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKER 281
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------- 329
+ V+T T ++H +I A KV+ +M + L T+ Y+++I +L K
Sbjct: 282 EVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENA 341
Query: 330 ------------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
YN +I A++ ++++ D C+P+ +T+ +++
Sbjct: 342 VLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRY 401
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C ++ G+ M E + +G +P T+ +L
Sbjct: 402 FCDAGDVEKGL----SMFEKMGQGSLPNLDTYNVL 432
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 101/266 (37%), Gaps = 55/266 (20%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG------------------------- 242
I SS+ F ++ + K D A K M +HG
Sbjct: 143 IGPSSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCPQDLHSFNTILDILCKSKRVEMAY 202
Query: 243 ----------FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
F D VSY +C K K LKEM E+G P++ T I++
Sbjct: 203 NNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNILLKGY 262
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA 352
+A Q+ EA + + +MK + D + Y TM+ V E A
Sbjct: 263 FRAGQLKEAWEFFLQMKEREVEIDV----------------VTYTTMVHGFGVVGEIKRA 306
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
K+ ++ + P T+ +++ C K +++ +L + EM+ KG VP +T+ ++
Sbjct: 307 RKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVL---MFEEMVKKGYVPNLTTYNVV 363
Query: 413 AEEL-EKKSLGNAKERIDELLTHATE 437
L ++ A E I+ + T E
Sbjct: 364 IRGLFHAGNMDKAMEFIERMKTDGCE 389
>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 122/266 (45%), Gaps = 27/266 (10%)
Query: 173 MRRLDTRAMSVLMDTLV----KRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRK 227
MR A V +TL+ + V A K+ + K +S + ++ LI G+C
Sbjct: 293 MRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGN 352
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
D A + ++ +G SP V+Y IE Y + +++ V +EM+ +G PS +TCT+
Sbjct: 353 LDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTV 412
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL---------SKAVRFL---- 334
++ A + +++ +A ++Y M+ + D Y LI L SK R +
Sbjct: 413 LIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMH 472
Query: 335 ------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
IYNTMI C AL+L +++E P+ +++ + + C + ++
Sbjct: 473 VEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAE 532
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAE 414
++L+ M E+ K P S M+++
Sbjct: 533 VLLDKMIELQLK---PSASILNMISK 555
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 110/265 (41%), Gaps = 24/265 (9%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ +LV+ N A+ F + K+ + F ++I G C+ D + + + + G
Sbjct: 134 LLGSLVRSNCFEKAWLFFNELKERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGL 193
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
SP+ V YT I+ C+ D + +M E G + T T++++ L K +
Sbjct: 194 SPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFD 253
Query: 304 VYEKMKSDDCLTDTSFYSSLI------------FILSKAVR-------FLIYNTMISSAC 344
++EKMK + + Y+ L+ F L +R + YNT+I C
Sbjct: 254 LFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMC 313
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
A KL ++++ + P+ T+ + C + +L+ ++ S G+ P
Sbjct: 314 REERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKAS---SLLDQLKSNGLSP 370
Query: 405 QESTHKMLAEELEKKSLGNAKERID 429
T+ +L E K GN K D
Sbjct: 371 SLVTYNILIEGYSKA--GNWKGVAD 393
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 27/192 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMSTVMRRL--- 176
TYN ++E K+ + + +L +E++ L + YV L M +
Sbjct: 374 TYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSM 433
Query: 177 -------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKS 228
D VL+ L + ++ + K+F + + S I++ +IHG+CK S
Sbjct: 434 EKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNS 493
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
A + ++EM G P+ SY+ I C++ + + + L +M E KPS +
Sbjct: 494 YRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPS----ASI 549
Query: 289 MHALEKAKQIYE 300
++ + KAK E
Sbjct: 550 LNMISKAKNFTE 561
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 98/236 (41%), Gaps = 20/236 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+VL++ L K+ + +F K K + + + ++ L++ +C K A EM +
Sbjct: 236 TVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRE 295
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G + V+Y I CRE+ + + + +M++ P++IT ++ + +
Sbjct: 296 RGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDK 355
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------------LIYNTMISS 342
A + +++KS+ Y+ LI SKA + + T++
Sbjct: 356 ASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLID 415
Query: 343 ACVRSEE-GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
A VR +E A ++ +E+ PD + + C K MK+ + M EM
Sbjct: 416 AYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEM 471
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 18/202 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+VLI+G+C+ K D A + +KEM G PDGV+Y I H+ + DF +K+M
Sbjct: 559 FNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMV 618
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
++G P+V+T ++HA + EA+K++ M S + + +
Sbjct: 619 KEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNT---------------V 663
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
IYN +I+S C +++ AL L ++ KP+ T K K + LM
Sbjct: 664 IYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKA---FELM 720
Query: 395 REMLSKGIVPQESTHKMLAEEL 416
M P T ++L E L
Sbjct: 721 DRMTEHACNPDYITMEILTEWL 742
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 130/310 (41%), Gaps = 36/310 (11%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYV 164
+V EAL+ F G++ P+ TYN +++ L K + G
Sbjct: 355 RVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCK-------------VGRQEEGLG 401
Query: 165 SLAAMSTVMRRL-DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGW 222
+ M + R + +T + L+D K + + A ++F + KD + + + L+ G
Sbjct: 402 LVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGM 461
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
CK + + A + EM G + V+YT I +C + K EM E GC P
Sbjct: 462 CKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDA 521
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISS 342
I ++ L +A ++ A V KMK + F ++ +N +I+
Sbjct: 522 IVYYTLISGLSQAGKLDRASFVLSKMK------EAGFSPDIV----------SFNVLING 565
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C +++ A ++ +++E KPD T+ + H + D LM++M+ +G+
Sbjct: 566 FCRKNKLDEAYEMLKEMENAGIKPDGVTYN---TLISHFSKTGDFSTAHRLMKKMVKEGL 622
Query: 403 VPQESTHKML 412
VP T+ L
Sbjct: 623 VPTVVTYGAL 632
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 105/241 (43%), Gaps = 29/241 (12%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LI C++ ++D A + + + G + S + R ++F++++ L EM+E
Sbjct: 276 LISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMD 335
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKM---KSDDCLT--DTSFYSSLIFILSKAVR 332
+P+V+T I+++ L K +++ EAL+V+EKM +S+ L D Y++LI L K R
Sbjct: 336 IQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGR 395
Query: 333 --------------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
+ YN +I C S A +L ++ +D P+ T
Sbjct: 396 QEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLN 455
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
+ C R+ + N EM KG+ T+ L ++ A E DE+
Sbjct: 456 TLVDGMCKHGRINGAVEFFN---EMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEM 512
Query: 432 L 432
L
Sbjct: 513 L 513
>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
Length = 664
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 139/327 (42%), Gaps = 55/327 (16%)
Query: 104 SPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGY 163
SP K E F WA ++ G+ H +Y M++ LG++ + + I+ SNG
Sbjct: 39 SPPKAFEF-----FNWA-SRNGFAHDSRSYFMMLDILGRNGNLNIARNFLFSIERRSNGS 92
Query: 164 VSLAAM--STVMRRLDTRAM-----------------------SVLMDTLVKRNSVAHAY 198
V + +T++R + + L+ L+KR A+
Sbjct: 93 VKIEDRFCNTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAH 152
Query: 199 KVFLKFKDCISLS--SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256
VF + ++ + F++LI G+CK D + KEM + PD V+Y ++
Sbjct: 153 SVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDG 212
Query: 257 YCREKDFRKVDYTLKEM--QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
CR R +K M + K P V+T T ++ ++I EAL V+E+M S
Sbjct: 213 LCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLK 272
Query: 315 TDTSFYSSLIF-------------ILSKAV--RFLI-----YNTMISSACVRSEEGNALK 354
+ Y++LI IL AV R + YNT++++ C ALK
Sbjct: 273 PNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALK 332
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHK 381
+ +K++E +PD T++ ++ C +
Sbjct: 333 MFKKMKELKVQPDSATYSVLIRNLCQR 359
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 73/337 (21%), Positives = 137/337 (40%), Gaps = 54/337 (16%)
Query: 117 FTWAKTQTGYMHTPE--TYNAMVEALGKSKKF----GLMWELVKEIDELSNGYVSLAAM- 169
F + K + + P+ TYN +V+ L ++ K ++ +VK++ +LS V+ +
Sbjct: 188 FRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLV 247
Query: 170 -STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS 228
M++ A+ V+ + +V R LK D ++ LI G C+ +K
Sbjct: 248 RGYCMKQEIDEAL-VVFEEMVSRG---------LKPNDIT------YNTLIKGLCEVQKF 291
Query: 229 DYAQKAMK-EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
D ++ + + GF PD +Y + C +F + K+M+E +P T ++
Sbjct: 292 DKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSV 351
Query: 288 VMHAL------EKAKQIYEALKVYEKMKSDD-CLTDTSFYSSLIFILSK---------AV 331
++ L E+A+Q+++ L + + DD C + Y+ + L K
Sbjct: 352 LIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVF 411
Query: 332 RFLI---------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
R L+ Y T+I C KL + PD ET+ + K
Sbjct: 412 RQLMKKGTQDPPSYKTLIIGHCKEGTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQK- 470
Query: 383 RMKDGMLVLNLMREMLSKGIVPQEST-HKMLAEELEK 418
+ +L + ML +P+ S H +L+E L+
Sbjct: 471 --GEPILAYKTLERMLKSSYLPKTSVFHSILSELLKN 505
>gi|357138018|ref|XP_003570595.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Brachypodium distachyon]
Length = 548
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 86/413 (20%), Positives = 176/413 (42%), Gaps = 62/413 (15%)
Query: 73 NEQSRISSHALSEDHETDVDKVSEIL-RKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPE 131
N+ + + AL + T + VS+++ R RY E L F WA Q Y H
Sbjct: 89 NDGTEAALDALGAELTTPL--VSDVMHRLRYE------EKLAFRFFAWASQQDNYEHDQA 140
Query: 132 TYNAMVEALG----KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL----------- 176
YN +++ L K+++FG++ +++ + V + + ++R
Sbjct: 141 AYNEVIDTLSGTRYKARQFGVLCDVLDHMKRHRTRSVPVEDLLAILRAYTEKHLTNLRKL 200
Query: 177 ------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCK 224
+T A+++L+D K V A VF + K + +++ +++L GWC+
Sbjct: 201 AKKRRVRMRTPPETDALNILLDAFCKCGMVREAETVFGRVKRKLQGNAETYNILFFGWCR 260
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG---CKPS 281
R A K ++EM +P+ +Y I+ +C + + M+ +G P+
Sbjct: 261 ARDPKKAMKVLEEMILMKHAPESFTYIAAIDSFCSAGLVSEAKELFEFMRTEGSSISSPT 320
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILS 328
++++ AL KA ++ + ++ M C+ D S + LI F+L
Sbjct: 321 AKAYSVMIVALVKADRMDDCFELISDMIKLGCMPDVSTFKDLIEGMCLVDKIDTAYFVLE 380
Query: 329 KAVR------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
+ + + YN + C + +ALKL +++ E C+P T+ + M
Sbjct: 381 EMGKAGFPPDIVTYNCFLEVLCNLQKADDALKLCERMIEAHCEPSVHTYNMLMVMFF--- 437
Query: 383 RMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTH 434
+M++ L++ EM +G T++++ + L + +A +DE++ H
Sbjct: 438 QMREPHRALDIWLEMDKRGCRRAVDTYEIMIDGLFDCGRTEDATNLLDEVINH 490
>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 624
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 153/322 (47%), Gaps = 34/322 (10%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
+YNA+++ L +K++G + EL +DE+ + +L+ M+ D R + ++D + K
Sbjct: 223 SYNAVLKGLCAAKRWGDVEEL---MDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKE 279
Query: 192 NSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
A ++ + L + ++ ++ G C + + A++ + EM+Q D V+
Sbjct: 280 GHHEVANEILSRMPS-YGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVT 338
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
+ ++ +C+ +V L++M E GC P VIT T V++ K I EA+ + + M
Sbjct: 339 FNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMP 398
Query: 310 SDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEG 350
S C +T Y+ ++ L R+ + +NT+I+ C +
Sbjct: 399 SCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVE 458
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A++L +++ + C PD +++ + + ++ + +LN+ M++KGI P T+
Sbjct: 459 QAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNV---MINKGITPNVITYS 515
Query: 411 MLAEELEKKSLGNAKERIDELL 432
+A L ++ RID+++
Sbjct: 516 SMAFALAREG------RIDKVI 531
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 93/220 (42%), Gaps = 20/220 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D + +++ K + A + C + I + +++ G C T + A++ M
Sbjct: 370 DVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELM 429
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M Q G P+ V++ I C++ + LK+M GC P +I+ + V+ L KA
Sbjct: 430 SRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKA 489
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIY 336
+ EAL++ M + + YSS+ F L++ R ++Y
Sbjct: 490 GKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLY 549
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
N +ISS C R E A+ + + C P+ T+ +K
Sbjct: 550 NAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIK 589
>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580 [Vitis vinifera]
gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 100/214 (46%), Gaps = 23/214 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ LI G+CK K D A + + M+ HG SPD ++Y + C+ + V T K M
Sbjct: 463 FNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMM 522
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
EKGC P++IT I+ + KA+++ EAL + E+M++ D + +L+
Sbjct: 523 EKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLD 582
Query: 325 --FILSKAV--------RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
+ L K V YN MI++ + A KL K+ E+ PD T+
Sbjct: 583 GAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVM 642
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+ C + G L L++ + KG++P +T
Sbjct: 643 IDGFCKTGNINSGYSFL-LVK--IEKGLIPSLTT 673
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 22/221 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I G+CK A + +++ GF PD +Y I C++ D + E
Sbjct: 323 YNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAM 382
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------S 328
EKG KP+++ C ++ L + I +ALK+ +M + C D Y+ +I L S
Sbjct: 383 EKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVS 442
Query: 329 KAVRFLI-------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
A +I +NT+I C + + NA+++ ++ PD T+ L
Sbjct: 443 DADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSIL 502
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C + +D M LM E KG VP T+ +L E
Sbjct: 503 NGLCKAGKYEDVMGTFKLMME---KGCVPNIITYNILTESF 540
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 136/360 (37%), Gaps = 81/360 (22%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEID-ELSNGY---VSLAAMSTV 172
F K + G+ HT TY M+E LG +F M E++ E + NG V + AM
Sbjct: 27 FNSVKKEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVLAETRMNIDNGLLEGVYIGAMRNY 86
Query: 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDY 230
R+ + A VF + F +C S Q ++ +++ + R D
Sbjct: 87 GRK----------------GKIQEAVDVFERMDFFNC-EPSVQSYNAIMNILVEYRYFDQ 129
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT-CTIVM 289
A K M G PD ++T ++ +CR L M +GC+ S + CT++
Sbjct: 130 AHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIG 189
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL-------------------------- 323
E+ ++ EA +++E+M D ++ L
Sbjct: 190 GFYEENHRV-EAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVS 248
Query: 324 -------IFI--------LSKAVRFL------------IYNTMISSACVRSEEGNALKLR 356
IFI L++A+R L YNT+I C + A
Sbjct: 249 PNLFTVNIFIQGFCQRAMLNEAIRLLDGVGRGLTPDVITYNTLICGLCKNFKVVEAEHYL 308
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+K+ + +PD T+ + C M++ +L R+ KG VP EST+ L L
Sbjct: 309 RKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQIL---RDGAFKGFVPDESTYCSLINGL 365
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 15/179 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN + E+ K++K + E + I+E+ N ++ D LM
Sbjct: 532 TYNILTESFCKARK---VEEALNLIEEMQNKGLTP----------DVVNFGTLMKGFCDN 578
Query: 192 NSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ AY++F + + S I ++++I+ + + A+K +M ++GFSPD +
Sbjct: 579 GDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYT 638
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
Y I+ +C+ + L EKG PS+ T V++ L ++++EA+ + M
Sbjct: 639 YRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLM 697
>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Glycine max]
Length = 479
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 153/359 (42%), Gaps = 53/359 (14%)
Query: 108 VVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKF----GLMWELVKE-------- 155
V +A+ F A+ G+ H ET+ ++ L +F G++ + +E
Sbjct: 28 VHKAVNMFDSATAEYGNGFRHDHETFGLIISRLVTVNQFRPAEGMLERMKQEKCMVTEDI 87
Query: 156 IDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205
+ GY + M R +A ++D LV+ N V A + + +
Sbjct: 88 FLSICRGYGRVHRPLDAIRVFHKMEGFQLRPTQKAYLTILDILVEENHVKRAIGFYREMR 147
Query: 206 DCISLSSQI-FDVLIHGWCKTRKS-DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263
+ SS + ++LI CK +++ D A + +EM G PD +Y I CR +
Sbjct: 148 ELGIPSSVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNI 207
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+ KEM++KG SV+T T ++H L ++ + EA+ + E+MK +D + YSSL
Sbjct: 208 SEAKELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSL 267
Query: 324 IFIL------SKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSC 364
+ L S+A++ L Y+T+I+ C + A+++ ++
Sbjct: 268 MDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGL 327
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST-------HKMLAEEL 416
KP+ + + + C ++ N + EM+ GI P ++ H M+ + L
Sbjct: 328 KPNAGLYGKIISGLCAAGSYQEAA---NFIDEMVLGGISPNRASWSLHVRMHNMVVQGL 383
>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 418
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 131/310 (42%), Gaps = 36/310 (11%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W KEI L GY + ++LM K
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWGFYKEI--LECGYPT-----------SLYFFNILMHRFCK 148
Query: 191 RNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A VF C S + F+ LI+G+ + D + M G PD +
Sbjct: 149 EGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVYT 208
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
T I C+E + + EM +KG P+ +T T ++ K+ ++ AL++Y++M
Sbjct: 209 NTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQML 268
Query: 310 SDDCLTDTSFYSSLIFILS-----KAVRFLI--------------YNTMISSACVRSEEG 350
D Y++LI+ L K R LI Y T+I +C +
Sbjct: 269 RQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLE 328
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A +LR+++ E+S + D + + C + R D ++REMLS G+ P+ T+
Sbjct: 329 TAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAE---KMLREMLSVGLKPENGTYT 385
Query: 411 MLAEELEKKS 420
M+ K+
Sbjct: 386 MIINGFCKQG 395
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 112/263 (42%), Gaps = 30/263 (11%)
Query: 153 VKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVFL 202
V + L NGY+ L + R D +VL++ L K + + A ++F
Sbjct: 171 VVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFN 230
Query: 203 KFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
+ D + + F LI G CK+ + D A + K+M + G+SPD ++Y I CR+
Sbjct: 231 EMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKG 290
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
D ++ + EM KG KP IT T ++ K + A ++ ++M + D Y+
Sbjct: 291 DLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYT 350
Query: 322 SLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
+L IS C +A K+ +++ KP+ T+ + C +
Sbjct: 351 AL----------------ISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQ 394
Query: 382 KRMKDGMLVLNLMREMLSKGIVP 404
+K L++EM G VP
Sbjct: 395 GDVKTAS---KLLKEMQRDGHVP 414
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 14/163 (8%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ GY TYN ++ L + +L+ E MS + D +
Sbjct: 269 RQGYSPDLITYNTLIYGLCRKGDLKQARDLIVE-------------MSMKGLKPDKITYT 315
Query: 183 VLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+D K + A+++ + ++ I L + LI G C+ ++ A+K ++EM
Sbjct: 316 TLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSV 375
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
G P+ +YT I +C++ D + LKEMQ G P V+T
Sbjct: 376 GLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGHVPCVVT 418
Score = 44.7 bits (104), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 99/246 (40%), Gaps = 19/246 (7%)
Query: 169 MSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS 228
+ST R L+ +++ ++ + ++S + + L+ K +F LI + ++
Sbjct: 23 LSTHQRILEAKSLIQIVVSRKGKDSASAVFAAILETKGAQRSDIYVFSGLITAYLESGFL 82
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
A + + +H F + +EH + K F+ V KE+ E G S+ I+
Sbjct: 83 RDAIECFRLTRKHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPTSLYFFNIL 142
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
MH K +I A V+ D +T S++ +NT+I+ +
Sbjct: 143 MHRFCKEGEIRLAQSVF------DAITKCGLRPSVV----------SFNTLINGYIRLGD 186
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+L+ + PD T+ + C + +M + + N EML KG+VP T
Sbjct: 187 LDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFN---EMLDKGLVPNGVT 243
Query: 409 HKMLAE 414
L +
Sbjct: 244 FTTLID 249
>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 602
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 143/330 (43%), Gaps = 42/330 (12%)
Query: 137 VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV------MRRLDTRAMSVLMDTLVK 190
V A+ KS+ GL L ++I NG +++ M + R + A ++ + LV+
Sbjct: 60 VSAVSKSEASGLNGRL-QQIVSTPNGDLNVIGMESSPIGVNGSRSFEEFASNIHLRKLVR 118
Query: 191 RNSVAHAYKVFLKFKDCISLSSQIFDV-----LIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+ LKF + + I DV LI G+C++ K+ A + M+ + G P
Sbjct: 119 NGELEEG----LKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVP 174
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D ++Y I YC+ + +D L+ ++ P V+T ++ +L + ++ EA++V
Sbjct: 175 DVITYNVLIGGYCKSGE---IDKALEVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVL 231
Query: 306 EKMKSDDCLTDTSFYSSLIFI------LSKAVRFL-------------IYNTMISSACVR 346
++ +C D Y+ LI + +A++ L YN +I+ C
Sbjct: 232 DRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKE 291
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
A+K + CKP+ TH L+ C R D L+ +ML KG P
Sbjct: 292 GRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAE---RLLSDMLRKGCSPSV 348
Query: 407 STHKMLAEEL-EKKSLGNAKERIDELLTHA 435
T +L L K+ LG A + ++++ H
Sbjct: 349 VTFNILINFLCRKRLLGRAIDVLEKMPKHG 378
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 136/337 (40%), Gaps = 70/337 (20%)
Query: 90 DVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLM 149
++DK E+L + +PD V TYN ++ +L S K
Sbjct: 191 EIDKALEVLERMSVAPDVV-----------------------TYNTILRSLCDSGKL--- 224
Query: 150 WELVKEIDELSNGYVSLAAMSTVMRRL------DTRAMSVLMDTLVKRNSVAHAYKVF-- 201
KE AM + R+L D ++L++ + V A K+
Sbjct: 225 ----KE------------AMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDE 268
Query: 202 LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
++ K C ++VLI+G CK + D A K + M +G P+ +++ + C
Sbjct: 269 MRKKGC-KPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTG 327
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
+ + L +M KGC PSV+T I+++ L + + + A+ V EKM C+ ++
Sbjct: 328 RWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNS---- 383
Query: 322 SLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
L YN ++ C + A++ + + C PD T+ L C
Sbjct: 384 ------------LSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKD 431
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
++ + +LN ++ SKG P T+ + + L K
Sbjct: 432 GKVDAAVEILN---QLSSKGCSPVLITYNTVIDGLTK 465
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 24/238 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK--DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
++L++ L ++ + A V K C+ +S ++ L+HG+C+ +K D A + ++ M
Sbjct: 352 NILINFLCRKRLLGRAIDVLEKMPKHGCVP-NSLSYNPLLHGFCQEKKMDRAIEYLEIMV 410
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G PD V+Y + C++ L ++ KGC P +IT V+ L K +
Sbjct: 411 SRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTE 470
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
A+++ E+M+ D YS+L+ L + + A+K+ +
Sbjct: 471 YAVELLEEMRRKGLKPDIITYSTLLRGLGR----------------EGKVDEAIKIFHDM 514
Query: 360 EEDSCKPDCETH-ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
E S KP T+ A L +C ++ + ++ + M+ KG P E+T+ +L E +
Sbjct: 515 EGLSIKPSAVTYNAIMLGLCKAQQTSR----AIDFLAYMVEKGCKPTEATYTILIEGI 568
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 26/168 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ AL K K E++ ++ S S V+ +T ++D L K
Sbjct: 420 TYNTLLTALCKDGKVDAAVEILNQL--------SSKGCSPVLITYNT-----VIDGLTKV 466
Query: 192 NSVAHAYKVFLKFK------DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+A ++ + + D I+ S+ L+ G + K D A K +M P
Sbjct: 467 GKTEYAVELLEEMRRKGLKPDIITYST-----LLRGLGREGKVDEAIKIFHDMEGLSIKP 521
Query: 246 DGVSYTCFIEHYCR-EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
V+Y + C+ ++ R +D+ L M EKGCKP+ T TI++ +
Sbjct: 522 SAVTYNAIMLGLCKAQQTSRAIDF-LAYMVEKGCKPTEATYTILIEGI 568
>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
Length = 841
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 112/255 (43%), Gaps = 31/255 (12%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDV--LIHGWCKTRKSDYAQKAMKEMFQ 240
++D VK SV A V+ + C I +S +F LI+G+CK+ D A K M EM
Sbjct: 579 IIDGFVKEGSVNSALAVYTEM--CKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKN 636
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G D Y I+ +CR+ D L E+QE G P+ + + ++ K + +
Sbjct: 637 KGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEA 696
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI-------------------YNTMIS 341
AL ++++M ++ D Y++LI L K + L Y+ +I
Sbjct: 697 ALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIH 756
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML--VLNLMREMLS 399
C + + NA QKI ED + C T + K+G L L EML
Sbjct: 757 GLCNKGQLENA----QKILEDMDR-KCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLD 811
Query: 400 KGIVPQESTHKMLAE 414
KG+VP ++T+ +L
Sbjct: 812 KGLVPDDTTYDILVN 826
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 130/273 (47%), Gaps = 28/273 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
SVLMD K+ +A+ ++ + + + I+ S +++I+G CK ++ +Q +K++ Q
Sbjct: 507 SVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQ 566
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
GF P ++Y C I+ + +E EM + G P+V T T +++ K+ +
Sbjct: 567 EGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDL 626
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI------FILSKAVRFL-------------IYNTMIS 341
ALKV ++MK+ D + Y +LI + A + L +Y++MIS
Sbjct: 627 ALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMIS 686
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL--NLMREMLS 399
AL L +++ + D + + + +K+G L+ L EML+
Sbjct: 687 GFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLI-----SGLLKEGKLLFASELYAEMLA 741
Query: 400 KGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
KGI+P T+ +L L K L NA++ ++++
Sbjct: 742 KGIMPDLITYSVLIHGLCNKGQLENAQKILEDM 774
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 112/258 (43%), Gaps = 31/258 (12%)
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFK------DCISLSSQIFDVLIHGWCKTRKSDYAQK 233
M++ + LVK N + A V+ K DC ++S V+I + K + A+
Sbjct: 191 VMNIFLSELVKNNMIREARDVYNKMASKGVKGDCATIS-----VMIRASMREGKLEEAEG 245
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
+E G D +Y+ IE C++ D L+EM++KG P + T V+
Sbjct: 246 WFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCM 305
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
K ++ EA+KV +M S K + ++ T++ C + + +AL
Sbjct: 306 KQGKMLEAVKVKGEMLS----------------CGKPMNVVVATTLMKGYCKQGDLDSAL 349
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE-STHKML 412
+L K+ E+ P+ T+A ++ CC M + N M+ +K I P + + ++
Sbjct: 350 ELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMK---NKDISPTVFNVNSLI 406
Query: 413 AEELEKKSLGNAKERIDE 430
L+ +S A + DE
Sbjct: 407 RGYLKARSPEEASKLFDE 424
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 109/268 (40%), Gaps = 23/268 (8%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ +K S A K+F + C + ++ L+ CK K A ++M + G
Sbjct: 405 LIRGYLKARSPEEASKLFDEAVACGIANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGV 464
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
P VSY I +C++ D + EM EKG KP++IT +++M K A
Sbjct: 465 RPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFG 524
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSAC 344
+Y++M+ ++ + +I L KA R + YN +I
Sbjct: 525 LYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFV 584
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+AL + ++ + P+ T+ + C M L L +M EM +KGI
Sbjct: 585 KEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMD---LALKVMDEMKNKGIEL 641
Query: 405 QESTHKMLAEEL-EKKSLGNAKERIDEL 431
+ + L + K + NA + + EL
Sbjct: 642 DVTVYCALIDGFCRKGDMVNASQLLSEL 669
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 100/246 (40%), Gaps = 29/246 (11%)
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI-SLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
TR + V M K+ + A KV + C ++ + L+ G+CK D A +
Sbjct: 298 TRVIGVCM----KQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFD 353
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
+M ++G P+ V+Y IE C+ + K +M+ K P+V ++ KA+
Sbjct: 354 KMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKAR 413
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
EA K++++ + YN+++S C + A +
Sbjct: 414 SPEEASKLFDEA-----------------VACGIANVFTYNSLLSWLCKEGKMSEACSIW 456
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRM--KDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+K+ +P ++ + C + M +G+ V EML KG+ P T+ +L +
Sbjct: 457 EKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFV-----EMLEKGLKPNLITYSVLMD 511
Query: 415 ELEKKS 420
KK
Sbjct: 512 GYFKKG 517
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ VLIHG C + + AQK +++M + +P Y I + +E + ++ EM
Sbjct: 751 YSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEML 810
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEA 301
+KG P T I+++ K ++
Sbjct: 811 DKGLVPDDTTYDILVNGKVKDGNLFSG 837
>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
Length = 604
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 121/265 (45%), Gaps = 28/265 (10%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY+ +V AL + G+ EL E ++S G+ A M M T+A L D
Sbjct: 320 TYSTLVGALLHTNNVGMAMELFHE--KMSEGHSPDAIMYFTMISGLTQA-GRLEDACSMA 376
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
+S+ A FK L ++ +++LI G+C+ ++ A + ++EM + G PD +Y
Sbjct: 377 SSMKEA-----GFK----LDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYN 427
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ C+ DF VD L +M + GC+PSVIT ++H K +I EAL++ M
Sbjct: 428 TLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDES 487
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+ +IYNT+I C R + A++L +++E S + T
Sbjct: 488 GIHPNN----------------VIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTF 531
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMRE 396
LK K + +++ MRE
Sbjct: 532 NALLKGLRDKNMPEKAFELMDQMRE 556
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 14/195 (7%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G+ + YN ++ + K+ +EL++E+ E V R D +
Sbjct: 381 EAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKE-------------VGIRPDVCTYN 427
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+ K A ++ K D S I F L+HG+CK K D A + ++ M +
Sbjct: 428 TLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDES 487
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G P+ V Y I+ C+ D EM+EK +V T ++ L +A
Sbjct: 488 GIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKA 547
Query: 302 LKVYEKMKSDDCLTD 316
++ ++M+ + C D
Sbjct: 548 FELMDQMREERCFPD 562
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/307 (19%), Positives = 129/307 (42%), Gaps = 41/307 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
+N+++ AL + V+++ ++ Y + ++V R D +L++ L K
Sbjct: 138 AFNSILAALAR----------VRDVPGMARIYALMQGCASV--RPDVVTYGILVNGLCKA 185
Query: 192 NSVAHAYKVF--LKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ--HGFSPD 246
V A +V + +D I + ++ G CK+ + A +++ HG P+
Sbjct: 186 GRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPN 245
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+Y C I+ +CR + +++M+ +G +++T ++ L +A + AL+ +
Sbjct: 246 TVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFR 305
Query: 307 KMKS--DDCLTDTSFYSSLIFIL-------------------SKAVRFLIYNTMISSACV 345
+ ++ + + YS+L+ L + ++Y TMIS
Sbjct: 306 EKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQ 365
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+A + ++E K D + + + C KKR+ + L++EM GI P
Sbjct: 366 AGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHE---AYELLQEMKEVGIRPD 422
Query: 406 ESTHKML 412
T+ L
Sbjct: 423 VCTYNTL 429
>gi|242050034|ref|XP_002462761.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
gi|241926138|gb|EER99282.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
Length = 535
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 140/356 (39%), Gaps = 50/356 (14%)
Query: 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL- 188
P+ Y +M++ L K F L L+ E+ E + S + + R + S D
Sbjct: 135 PDLYASMIDLLAKHHHFSLARHLLDEMRERAVPISSRLIFALIRRYVRAEMPSEAADLFR 194
Query: 189 ----------------------VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR 226
K+ + A +F + + ++ ++H WC+
Sbjct: 195 RMEEYGSGAPEPATLASLLAALSKKRLASEAQALFDSCRTVFTPDVVLYTAVVHAWCRAG 254
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
+ D A++ EM Q G P+ +YT I+ R + L +M + GC P+ T
Sbjct: 255 QLDEAERVFAEMQQSGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFN 314
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI--------LSKAVRFL---- 334
+M A KA + + L+V+ +M C D Y+ LI L A++ L
Sbjct: 315 AIMRAHVKAGRSEQVLQVHNQMHQLRCEPDIITYNFLIETHCGKGQGNLDAALKVLDKMI 374
Query: 335 ---------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
+N M V G A KL +K+ E CKP+ T+ LK+ +K M
Sbjct: 375 AKKCVPDCHTFNPMFRLLVVLGNIGAAHKLYEKMRELQCKPNVVTYNCLLKLFNKEKSMD 434
Query: 386 DGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQRTF 441
+VL + + M +GI P T+ L E + GN K R L E+++F
Sbjct: 435 ---MVLRMKKNMDVEGIEPNMHTYAALIEAFCGR--GNWK-RAHATLKEMIEEKSF 484
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 123/295 (41%), Gaps = 36/295 (12%)
Query: 53 SPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEAL 112
+PD + +W + +L+E R+ + +V + ++ Y + +V A
Sbjct: 237 TPDVVLYTAVVHAWCRAGQLDEAERVFAEMQQSGIMPNVYTYTAVIDAMYRA-GQVPRAQ 295
Query: 113 KCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDEL------------- 159
+ C +G T+NA++ A K+ + + ++ ++ +L
Sbjct: 296 ELLC---QMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMHQLRCEPDIITYNFLI 352
Query: 160 ----SNGYVSLAAMSTVMRRL-------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208
G +L A V+ ++ D + + LV ++ A+K++ K ++
Sbjct: 353 ETHCGKGQGNLDAALKVLDKMIAKKCVPDCHTFNPMFRLLVVLGNIGAAHKLYEKMRELQ 412
Query: 209 SLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ + ++ L+ + K + D + K M G P+ +Y IE +C ++++
Sbjct: 413 CKPNVVTYNCLLKLFNKEKSMDMVLRMKKNMDVEGIEPNMHTYAALIEAFCGRGNWKRAH 472
Query: 268 YTLKEM-QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
TLKEM +EK KPS +V+ L KA Q LK +E++ + + D F S
Sbjct: 473 ATLKEMIEEKSFKPSKQVRDMVLVLLRKAGQ----LKKHEELV--ELMVDRGFIS 521
>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Vitis vinifera]
Length = 778
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 130/311 (41%), Gaps = 50/311 (16%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELS--NGYVSLAAMSTVMRRL---- 176
++G+ TYN ++ K+ G M E + +DE+ N + ++T++R L
Sbjct: 411 ESGFSPDCVTYNTLINGYCKA---GNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREK 467
Query: 177 -------------------DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIF 215
D + L+ K +V A K++ +K K+ I S+ +
Sbjct: 468 KLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIP-STVTY 526
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+ +I G C+ K++ A + E+ + G PD +Y + YCRE D K +M E
Sbjct: 527 NCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVE 586
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335
KP V TC I++ L + +ALK++ S KA+ +
Sbjct: 587 NSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSK----------------GKAIDTVT 630
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
YNT+I+S C +A L ++EE PD T+ + R+++ M
Sbjct: 631 YNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAE---EFMS 687
Query: 396 EMLSKGIVPQE 406
+ML KG +P +
Sbjct: 688 KMLEKGNLPDQ 698
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 122/287 (42%), Gaps = 31/287 (10%)
Query: 173 MRRLDTR----AMSVLMDTLVKRNSVAHAYKVFLKFKDCISL----SSQIFDVLIHGWCK 224
M+RL R + L+++LV+ S F D I L + F+++I+G+C
Sbjct: 161 MKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCL 220
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
K A + + M ++ SPD V+Y ++ C++ L +M+ +G P+ T
Sbjct: 221 ENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNT 280
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------- 333
I+++ K + EA V E M ++ L D Y+ LI L R
Sbjct: 281 YNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEME 340
Query: 334 --------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
+ YNT+I+ S+ A KL +++ E KP+ TH +K C + +M
Sbjct: 341 NLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMD 400
Query: 386 DGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
D N + +M G P T+ L + ++G A +DE+
Sbjct: 401 DAS---NTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEM 444
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 127/296 (42%), Gaps = 41/296 (13%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-DTRA 180
TQ + TYN ++ L G + E K DE+ N ++ L D +
Sbjct: 305 TQNNLLPDVWTYNMLINGLCNE---GRIEEAFKLRDEMEN-----------LKLLPDVVS 350
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ L++ ++ + ++ A+K+ + + + ++ ++++ +CK K D A + +M
Sbjct: 351 YNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKME 410
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ GFSPD V+Y I YC+ + + T+ EM K K +T ++ L + K++
Sbjct: 411 ESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLE 470
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN---ALKLR 356
EA K+ + D Y +LI K +GN ALKL
Sbjct: 471 EAYKLLSSARKRGYFIDEVSYGTLIVGYFK-------------------DGNVDRALKLW 511
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+++E P T+ + C + + + LN E+L G++P E+T+ +
Sbjct: 512 DEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLN---ELLESGLLPDETTYNTI 564
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/144 (19%), Positives = 67/144 (46%), Gaps = 16/144 (11%)
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
K+M+ +P+++TC ++++L + + + +F ++ +
Sbjct: 158 FKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSV-----------SFSREAFNDAIKLGIVP 206
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
V +N +I C+ ++ +A++ + + +C PD T+ L C K R+ D
Sbjct: 207 NVN--TFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDAR- 263
Query: 390 VLNLMREMLSKGIVPQESTHKMLA 413
+L+ +M S+G++P +T+ +L
Sbjct: 264 --DLLMDMKSRGLLPNRNTYNILV 285
>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
Length = 628
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 139/346 (40%), Gaps = 28/346 (8%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI-------------------- 156
F W Q GY H+ TYN ++AL K+ L +E +++
Sbjct: 25 FDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLC 84
Query: 157 --DELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK---DCISLS 211
EL L + +L+ SV++D K + V A ++F C+
Sbjct: 85 KAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVP-D 143
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
F+ L+ G C + A + M + G P+ +SY+ ++ C+ + +
Sbjct: 144 VVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWE 203
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
EM EK C P ++ T + L KA ++ EA KM + D +S++I IL K
Sbjct: 204 EMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKG 263
Query: 332 RF-LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
N MI C A K +++ + P E + C KR+ DG+L+
Sbjct: 264 HAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLL 323
Query: 391 LNLMREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDELLTHA 435
M+ M P T+ ++ + L K K L A+E ++E+ +
Sbjct: 324 FQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYG 369
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 91/209 (43%), Gaps = 19/209 (9%)
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
+ +++++ CK ++ D AQ+ + EM +G SPD V+Y+ ++ C+ + L+E
Sbjct: 340 ETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEE 399
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M ++G P T +++AL KA ++ AL E MK+ D
Sbjct: 400 MSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPD---------------- 443
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
+ YNT++ C A+ K+ C PD ++ + C + +
Sbjct: 444 LVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIF- 502
Query: 393 LMREMLSKGIVPQESTHKMLAEELEKKSL 421
+EM+ +G++P + L + L + L
Sbjct: 503 --QEMVKRGVLPDTVLYHSLLDGLARNGL 529
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 94/254 (37%), Gaps = 55/254 (21%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDE--LSNGYVSLAAMSTVMRRL------------ 176
ETYN MV+ L K+K+ ELV E+ LS V+ +A+ + +L
Sbjct: 340 ETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEE 399
Query: 177 --------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRK 227
D+ + +++ L K V +A K S + ++ L+ G CK +
Sbjct: 400 MSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGR 459
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG---------- 277
D A + +M +PD SYT I CR +EM ++G
Sbjct: 460 IDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHS 519
Query: 278 ----------------------CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315
CKP + +V+ L KA + +A +V E+M
Sbjct: 520 LLDGLARNGLEDLALELLKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFPA 579
Query: 316 DTSFYSSLIFILSK 329
D Y +++ L K
Sbjct: 580 DAFTYINVVRGLRK 593
>gi|413938248|gb|AFW72799.1| hypothetical protein ZEAMMB73_717335 [Zea mays]
Length = 501
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 120/256 (46%), Gaps = 32/256 (12%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+D LVK + A + + + ++ L GWC+ + + A +++M + G
Sbjct: 181 LLDALVKSRRASKAASLVRALEQRFPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGI 240
Query: 244 SPDGVSYTCFIEHYCREKDFRKV-DYTLKEMQEKG-----CKPSVITCTIVMHALEKAKQ 297
+P +Y ++ + R + D+ L +M+ +G CKP V++ T V+H L A Q
Sbjct: 241 APTKATYNIILKGFFRSGQLQHAWDFFL-QMKRRGSNDENCKPDVVSYTTVLHGLGVAGQ 299
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFI------LSKAV-------------RFLIYNT 338
+ +A KV+++M + C T+ Y++LI + L AV + Y
Sbjct: 300 LDKARKVFDEMSIEGCKPSTATYNALIQVTCKKGNLEDAVAVFDDMVRKGYIPNVVTYTV 359
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+I C + A+KL +++ + C+P+ +T+ ++ + ++ G+ + E +
Sbjct: 360 LIRGLCHAGKVVRAMKLLDRMKSEGCEPNVQTYNVLIRYSLEEGEIEKGLDLF----ETM 415
Query: 399 SKG--IVPQESTHKML 412
SKG +P + T+ ++
Sbjct: 416 SKGEECLPNQDTYNII 431
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 136/307 (44%), Gaps = 54/307 (17%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDE-----------LSNGYVSLAAMST---VMRRL-- 176
+N++++AL KS++ LV+ +++ L++G+ + S ++R++
Sbjct: 178 FNSLLDALVKSRRASKAASLVRALEQRFPPDAVTYNTLADGWCRVKDTSRALDILRQMVE 237
Query: 177 ----DTRAM-SVLMDTLVKRNSVAHAYKVFLKFK-----------DCISLSSQIFDVLIH 220
T+A ++++ + + HA+ FL+ K D +S + ++H
Sbjct: 238 SGIAPTKATYNIILKGFFRSGQLQHAWDFFLQMKRRGSNDENCKPDVVS-----YTTVLH 292
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G + D A+K EM G P +Y I+ C++ + +M KG P
Sbjct: 293 GLGVAGQLDKARKVFDEMSIEGCKPSTATYNALIQVTCKKGNLEDAVAVFDDMVRKGYIP 352
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340
+V+T T+++ L A ++ A+K+ ++MKS+ C + YN +I
Sbjct: 353 NVVTYTVLIRGLCHAGKVVRAMKLLDRMKSEGCEPNVQ----------------TYNVLI 396
Query: 341 SSACVRSEEGNALKLRQKIEE-DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
+ E L L + + + + C P+ +T+ + +KR +D + ++ EM+
Sbjct: 397 RYSLEEGEIEKGLDLFETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVD 456
Query: 400 KGIVPQE 406
+G +P++
Sbjct: 457 RGYLPRK 463
>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 103/236 (43%), Gaps = 31/236 (13%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK------FKDCISLSSQIFDVLIHGWCKTRKSDY 230
D + ++L+ L + + A++ F F D +S ++ LI+G+C+ +
Sbjct: 213 DVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVS-----YNTLINGFCRVNEISK 267
Query: 231 AQKAMKE-MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
+KE M G SPD ++YT I YC+ D + EM G KP+ T +++
Sbjct: 268 GHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLI 327
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE 349
K + A+ +YEKM CL D ++SL I C E
Sbjct: 328 DGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSL----------------IDGYCREGEV 371
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
LKL ++++ + P+ T+A + C + R+++ N +R + S +VP+
Sbjct: 372 NQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREAR---NFLRHLKSSEVVPK 424
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 131/331 (39%), Gaps = 44/331 (13%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG---- 162
++ E K F F G +YN ++ + + +L+KE D L G
Sbjct: 226 RIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKE-DMLIKGVSPD 284
Query: 163 ---YVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLI 219
Y S+ +S + D +A S L D +V I + F+VLI
Sbjct: 285 VITYTSI--ISGYCKLGDMKAASELFDEMVSSG---------------IKPNDFTFNVLI 327
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
G+ K A ++M G PD V++T I+ YCRE + + +EM+ +
Sbjct: 328 DGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLS 387
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTM 339
P+V T ++++AL K +I EA +KS + + IYN +
Sbjct: 388 PNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKP----------------FIYNPV 431
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I C + A + +++E C+PD T + C K RM + ++ +M+
Sbjct: 432 IDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEA---ISTFYKMIE 488
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERIDE 430
VP E T L L K + N +I +
Sbjct: 489 INCVPDEITINSLISCLLKAGMPNEASQIKQ 519
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/329 (20%), Positives = 133/329 (40%), Gaps = 45/329 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEAL---GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM 173
F +++T HT TY+ ++ L G + ++++ ++ S+G +
Sbjct: 96 FEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMR-----SDGILP-------- 142
Query: 174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC--ISLSSQIFDVLIHGWCKTRKSDYA 231
D+ + +L+ + + + A K FL C I +S +++ L++ K D A
Sbjct: 143 ---DSSILELLVSSYARMGKLDSA-KNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEA 198
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
+E + F PD S+ I CR + K + M GC P +++ +++
Sbjct: 199 VLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLING 258
Query: 292 LEKAKQI---YEALK--VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR 346
+ +I ++ LK + K S D +T TS S + +++ M+SS
Sbjct: 259 FCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKP 318
Query: 347 SE------------EGN---ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
++ GN A+ + +K+ C PD T + C + + G L
Sbjct: 319 NDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQG---L 375
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEKKS 420
L EM + + P T+ +L L K++
Sbjct: 376 KLWEEMKVRNLSPNVYTYAVLINALCKEN 404
>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Brachypodium distachyon]
Length = 686
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 129/303 (42%), Gaps = 39/303 (12%)
Query: 159 LSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI---- 214
L NG +S L T S L+ T V N++ + Y + S+ Q+
Sbjct: 334 LLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRL 393
Query: 215 -------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
++ LI+G K + A + EM ++G +P ++ I+ Y R K
Sbjct: 394 IRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCF 453
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--- 324
L +MQEKG KP+V++ +++A K +I EA+ + + M D L Y+++I
Sbjct: 454 IILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAY 513
Query: 325 ---------FILSKAVR-------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
F+L++ ++ + YN +I C +S+ A +L + PD
Sbjct: 514 IECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDV 573
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
++ + CC++ L L +EM GI P T++ML SLG A R+
Sbjct: 574 ISYNTLISACCYRSNTDR---ALELEKEMWKCGIKPSPRTYRMLF-----SSLGGAG-RV 624
Query: 429 DEL 431
E+
Sbjct: 625 HEM 627
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 107/244 (43%), Gaps = 26/244 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ ++D +K+ + ++++ + + + + ++VL+ G C+ + + EM
Sbjct: 227 NTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMAS 286
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
PDG +Y+ + + R D + + +E +KG K TC+I+++ L K +I +
Sbjct: 287 RKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISK 346
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A +V + + + L T +IYNT+I+ C + A + Q+++
Sbjct: 347 AEEVLQTLVNSGLLQTT----------------VIYNTLINGYCQIGDLEGAFSIFQQMK 390
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML------AE 414
+PD T+ + +R+ + +L+ EM G+ P T L A
Sbjct: 391 SRLIRPDHITYNALINGLGKVERITEAH---DLVIEMEKNGVNPSVETFNTLIDAYGRAG 447
Query: 415 ELEK 418
+LEK
Sbjct: 448 QLEK 451
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 94/213 (44%), Gaps = 14/213 (6%)
Query: 113 KCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
KCF + G +Y ++V A K+ K + E V +D++ V A
Sbjct: 451 KCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGK---ILEAVAILDDMFIKDVLPGA---- 503
Query: 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYA 231
+ + ++D ++ S A+ + K K + S +++LI G CK + A
Sbjct: 504 ------QVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEA 557
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
++ + + +G +PD +SY I C + + KEM + G KPS T ++ +
Sbjct: 558 EELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSS 617
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
L A +++E +Y++M D + + Y+ ++
Sbjct: 618 LGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMV 650
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/293 (18%), Positives = 115/293 (39%), Gaps = 51/293 (17%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELS------NGYVSLAAMSTVMRRLDTRAMSVLM 185
TYN ++ L ++ G M E +DE++ +G+ R D++ M L
Sbjct: 260 TYNVLLSGLCRA---GRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLF 316
Query: 186 DTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+ VK+ AY +L++G CK K A++ ++ + G
Sbjct: 317 EESVKKGVKIGAYTC---------------SILLNGLCKDGKISKAEEVLQTLVNSGLLQ 361
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
V Y I YC+ D ++M+ + +P IT +++ L K ++I EA +
Sbjct: 362 TTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLV 421
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTMISSACVRSEEGNALKLRQKIEE 361
+M+ + +++LI +A + F+I + M +E
Sbjct: 422 IEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDM--------------------QE 461
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
KP+ ++ + C ++ + + +L+ +M K ++P + + +
Sbjct: 462 KGLKPNVVSYGSIVNAFCKNGKILEAVAILD---DMFIKDVLPGAQVYNAIID 511
>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 103/236 (43%), Gaps = 31/236 (13%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK------FKDCISLSSQIFDVLIHGWCKTRKSDY 230
D + ++L+ L + + A++ F F D +S ++ LI+G+C+ +
Sbjct: 213 DVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVS-----YNTLINGFCRVNEISK 267
Query: 231 AQKAMKE-MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
+KE M G SPD ++YT I YC+ D + EM G KP+ T +++
Sbjct: 268 GHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLI 327
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE 349
K + A+ +YEKM CL D ++SL I C E
Sbjct: 328 DGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSL----------------IDGYCREGEV 371
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
LKL ++++ + P+ T+A + C + R+++ N +R + S +VP+
Sbjct: 372 NQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREAR---NFLRHLKSSEVVPK 424
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 131/331 (39%), Gaps = 44/331 (13%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG---- 162
++ E K F F G +YN ++ + + +L+KE D L G
Sbjct: 226 RIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKE-DMLIKGVSPD 284
Query: 163 ---YVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLI 219
Y S+ +S + D +A S L D +V I + F+VLI
Sbjct: 285 VITYTSI--ISGYCKLGDMKAASELFDEMVSSG---------------IKPNDFTFNVLI 327
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
G+ K A ++M G PD V++T I+ YCRE + + +EM+ +
Sbjct: 328 DGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLS 387
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTM 339
P+V T ++++AL K +I EA +KS + + IYN +
Sbjct: 388 PNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKP----------------FIYNPV 431
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I C + A + +++E C+PD T + C K RM + ++ +M+
Sbjct: 432 IDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEA---ISTFYKMIE 488
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERIDE 430
VP E T L L K + N +I +
Sbjct: 489 INCVPDEITINSLISCLLKAGMPNEASQIKQ 519
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/329 (20%), Positives = 133/329 (40%), Gaps = 45/329 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEAL---GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM 173
F +++T HT TY+ ++ L G + ++++ ++ S+G +
Sbjct: 96 FEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMR-----SDGILP-------- 142
Query: 174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC--ISLSSQIFDVLIHGWCKTRKSDYA 231
D+ + +L+ + + + A K FL C I +S +++ L++ K D A
Sbjct: 143 ---DSSILELLVSSYARMGKLDSA-KNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEA 198
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
+E + F PD S+ I CR + K + M GC P +++ +++
Sbjct: 199 VLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLING 258
Query: 292 LEKAKQI---YEALK--VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR 346
+ +I ++ LK + K S D +T TS S + +++ M+SS
Sbjct: 259 FCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKP 318
Query: 347 SE------------EGN---ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
++ GN A+ + +K+ C PD T + C + + G L
Sbjct: 319 NDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQG---L 375
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEKKS 420
L EM + + P T+ +L L K++
Sbjct: 376 KLWEEMKVRNLSPNVYTYAVLINALCKEN 404
>gi|334187687|ref|NP_197005.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635761|sp|Q9LFQ4.2|PP383_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g15010, mitochondrial; Flags: Precursor
gi|332004721|gb|AED92104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 572
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 145/342 (42%), Gaps = 46/342 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR- 175
F WA Q GY+ + Y++M+ LGK +KF W L+ E+ + S V+ + ++R+
Sbjct: 148 FVWAGKQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKY 207
Query: 176 ----------------------LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+ L+ L + +V+ A + KD ++
Sbjct: 208 CAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAK 267
Query: 214 IFDVLIHGWCKTRKSDY-AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
F+++++GWC S A++ EM G D VSY+ I Y + KV
Sbjct: 268 SFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDR 327
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL-TDTSFYSSLIFILSKAV 331
M+++ +P V+HAL KA + EA + + M+ + + + Y+SLI L KA
Sbjct: 328 MKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKAR 387
Query: 332 RF----LIYNTMISSA-------------CVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
+ +++ M+ +R+ E +L K+ + C+P ET+
Sbjct: 388 KTEEAKQVFDEMLEKGLFPTIRTYHAFMRILRTGE-EVFELLAKMRKMGCEPTVETYIML 446
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ C R +D VL L EM K + P S++ ++ L
Sbjct: 447 IRKLC---RWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGL 485
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 66/167 (39%), Gaps = 34/167 (20%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKA 234
D + + ++ L K + V+ A + ++ + + ++ LI CK RK++ A++
Sbjct: 336 DRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQV 395
Query: 235 MKEMFQHGFSPDGVSYTCF--------------------------------IEHYCREKD 262
EM + G P +Y F I CR +D
Sbjct: 396 FDEMLEKGLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRD 455
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
F V EM+EK P + + +++H L +I EA Y++MK
Sbjct: 456 FDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMK 502
>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g09680
gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 607
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 122/292 (41%), Gaps = 33/292 (11%)
Query: 153 VKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVFL 202
V + L NGY + + R R D S L++ L K N + A+ +F
Sbjct: 275 VVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFD 334
Query: 203 KF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
+ K + + IF LIHG + + D +++ ++M G PD V Y + +C+
Sbjct: 335 EMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNG 394
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
D + M +G +P IT T ++ + + AL++ ++M + D +S
Sbjct: 395 DLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFS 454
Query: 322 SLIFILSKAVRFL-------------------IYNTMISSACVRSEEGNALKLRQKIEED 362
+L+ + K R + Y M+ + C + + KL ++++ D
Sbjct: 455 ALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSD 514
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
P T+ L C +MK+ ++L+ ML+ G+VP + T+ L E
Sbjct: 515 GHVPSVVTYNVLLNGLCKLGQMKNADMLLD---AMLNIGVVPDDITYNTLLE 563
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 133/310 (42%), Gaps = 38/310 (12%)
Query: 136 MVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVA 195
+++ + K G +W EI L G+ L+ ++LM+ K +++
Sbjct: 211 LLDRMMKLNPTGTIWGFYMEI--LDAGF-----------PLNVYVFNILMNKFCKEGNIS 257
Query: 196 HAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI 254
A KVF + K + + F+ LI+G+CK D + +M + PD +Y+ I
Sbjct: 258 DAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALI 317
Query: 255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
C+E EM ++G P+ + T ++H + +I + Y+KM S
Sbjct: 318 NALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQ 377
Query: 315 TDTSFYSSLIFILSK-----AVRFLI--------------YNTMISSACVRSEEGNALKL 355
D Y++L+ K A R ++ Y T+I C + AL++
Sbjct: 378 PDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEI 437
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
R++++++ + D + + C + R+ D L REML GI P + T+ M+ +
Sbjct: 438 RKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERAL---REMLRAGIKPDDVTYTMMMDA 494
Query: 416 LEKKSLGNAK 425
KK G+A+
Sbjct: 495 FCKK--GDAQ 502
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 83/216 (38%), Gaps = 42/216 (19%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G+C+ + A + KEM Q+G D V ++ + C+E + L+EM
Sbjct: 418 YTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREML 477
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
G KP +T T++M A K K+ ++M+SD + +
Sbjct: 478 RAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSV----------------V 521
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET----------HARSLKMCCHKKRM 384
YN +++ C + NA L + PD T HA S K K +
Sbjct: 522 TYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSSKRYIQKPEI 581
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
GIV +++K + EL++ S
Sbjct: 582 ----------------GIVADLASYKSIVNELDRAS 601
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 68/333 (20%), Positives = 128/333 (38%), Gaps = 49/333 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI------DELSNGYVSLAAMS 170
F + +Q G+ T ETY + L + F L++ + + S+ ++SL M
Sbjct: 105 FKFISSQPGFRFTVETYFVLARFLAVHEMFTEAQSLIELVVSRKGKNSASSVFISLVEMR 164
Query: 171 TVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ-IFDVLIHG-------W 222
+ + LM T + A + C LS + FDV I G
Sbjct: 165 VT--PMCGFLVDALMITYTDLGFIPDAIQ-------CFRLSRKHRFDVPIRGCGNLLDRM 215
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
K + E+ GF + + + +C+E + E+ ++ +P+V
Sbjct: 216 MKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTV 275
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV----------- 331
++ +++ K + E ++ +M+ D YS+LI L K
Sbjct: 276 VSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDE 335
Query: 332 ---RFLIYNTMISSACV----RSEEGNALKLR-QKIEEDSCKPDCETHARSLKMCCHKKR 383
R LI N +I + + R+ E + +K QK+ +PD + + C
Sbjct: 336 MCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFC---- 391
Query: 384 MKDGMLVL--NLMREMLSKGIVPQESTHKMLAE 414
K+G LV N++ M+ +G+ P + T+ L +
Sbjct: 392 -KNGDLVAARNIVDGMIRRGLRPDKITYTTLID 423
>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
Length = 895
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 22/218 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LIHG+CKT + A + +++M G P+ +YT +E Y + D+ KV L+ M
Sbjct: 561 YSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSML 620
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------S 328
G KP IV+ L +++ + A V +++ + + D YSSLI L
Sbjct: 621 GSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADME 680
Query: 329 KAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
KAV L YN +I C + A + I P+C T+ +
Sbjct: 681 KAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALI 740
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
C + D +L +EML +GI P + +LA
Sbjct: 741 DGNCKNGDITD---AFDLYKEMLDRGIAPDAFVYNVLA 775
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/363 (21%), Positives = 148/363 (40%), Gaps = 58/363 (15%)
Query: 99 RKRYPSPDKVVEALKCFCFTWAKTQT--------------GYMHTPETYNAMVEALGKSK 144
R R PSP V L T+ KT + G T N +++ L ++
Sbjct: 165 RSRSPSPSTAV--LDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRAD 222
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF--L 202
L+W+L G++ A + D S ++ K A KVF +
Sbjct: 223 AMELLWKL--------KGFMEGAGILP-----DVYTYSTFIEAHCKARDFDAAKKVFEEM 269
Query: 203 KFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
+ +DC +++ ++V+I G C++ + A +EM +G SPD +Y + C+
Sbjct: 270 RRRDC-AMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSR 328
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
++ L EM G KP+++ ++ K + EA + ++M S +
Sbjct: 329 LKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNK----- 383
Query: 323 LIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
++Y+ +I C + G A KL +++ + +PD T+ L ++
Sbjct: 384 -----------IMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTY-NPLMQGHFQQ 431
Query: 383 RMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL----EKKSLGNAKERIDELLTHATEQ 438
KDG L+ EM + GI+P ++ ++ L E K GN ++E+++ +
Sbjct: 432 HDKDG--AFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNL---LEEMISEGLKP 486
Query: 439 RTF 441
F
Sbjct: 487 NAF 489
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 137/342 (40%), Gaps = 47/342 (13%)
Query: 116 CFTWAKTQTGYMHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM 173
F + + Y +P+ TY A++ L K + +KE L L MS
Sbjct: 297 AFGFKEEMVDYGLSPDAFTYGALMNGLCKGSR-------LKEAKAL------LDEMSCSG 343
Query: 174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ----IFDVLIHGWCKTRKSD 229
+ + L+D +K A A+ + K+ IS Q ++D LI G CK +
Sbjct: 344 LKPNIVVYGTLVDGFMKEGKTAEAFDIL---KEMISAGVQPNKIMYDNLIRGLCKIGQLG 400
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
A K +KEM + G PD +Y ++ + ++ D L EM+ G P+V + I++
Sbjct: 401 RASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMI 460
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----------------- 332
+ L + + EA + E+M S+ + Y+ LI SK
Sbjct: 461 NGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVH 520
Query: 333 --FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
YN++I A + ++++ PD T++ + C ++
Sbjct: 521 PDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKAD-- 578
Query: 391 LNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
L+R+ML+ G+ P T+ L E K N E++ +L
Sbjct: 579 -QLLRQMLNSGLKPNADTYTDLLEGYFKS---NDYEKVSSIL 616
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/330 (21%), Positives = 123/330 (37%), Gaps = 53/330 (16%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+G +TY ++E KS +E V I L +M + D
Sbjct: 586 NSGLKPNADTYTDLLEGYFKSND----YEKVSSI---------LQSMLGSGDKPDNHIYG 632
Query: 183 VLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+++ L + ++ A+ V + K+ + I+ LI G CK + A + EM +
Sbjct: 633 IVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKE 692
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G P V Y I+ +CR D + + KG P+ +T T ++ K I +A
Sbjct: 693 GLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDA 752
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-----FL-------------IYNTMISSA 343
+Y++M D Y+ L S A FL ++NT++
Sbjct: 753 FDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYANVSLFNTLVHGF 812
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C R + KL + + P+ +T V ++ E G +
Sbjct: 813 CKRGKLQETEKLLHVMMDREIVPNAQT-------------------VEKVVSEFGKAGKL 853
Query: 404 PQESTHKMLAEELEKKSLGNAKERIDELLT 433
+ H++ AE +KK+ +A +R L T
Sbjct: 854 GE--AHRVFAELQQKKASQSATDRFSLLFT 881
>gi|15239018|ref|NP_196692.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174149|sp|Q9LFM6.1|PP375_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g11310, mitochondrial; Flags: Precursor
gi|8953393|emb|CAB96666.1| putative protein [Arabidopsis thaliana]
gi|110738090|dbj|BAF00978.1| hypothetical protein [Arabidopsis thaliana]
gi|332004275|gb|AED91658.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 602
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 141/338 (41%), Gaps = 58/338 (17%)
Query: 116 CFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE---IDELSNGYVSLAAMSTV 172
F WA+ + G+ +P ++++V +L K+++F + W LV + DE SN VS +
Sbjct: 121 VFKWAEMKPGFTLSPSLFDSVVNSLCKAREFEIAWSLVFDRVRSDEGSN-LVSADTFIVL 179
Query: 173 MRRL---------------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205
+RR + R + VL+D L K V A +
Sbjct: 180 IRRYARAGMVQQAIRAFEFARSYEPVCKSATELRLLEVLLDALCKEGHVREASMYLERIG 239
Query: 206 DCIS----LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
+ S +IF++L++GW ++RK A+K +EM P V+Y IE YCR +
Sbjct: 240 GTMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMR 299
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
+ L+EM+ + + + ++ L +A ++ EAL + E+
Sbjct: 300 RVQIAMEVLEEMKMAEMEINFMVFNPIIDGLGEAGRLSEALGMMER-------------- 345
Query: 322 SLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
F+ + YN+++ + C + A K+ + + P T+ K
Sbjct: 346 --FFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKH 403
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTH----KMLAEE 415
+ ++GM NL +++ G P T+ KML E+
Sbjct: 404 NKTEEGM---NLYFKLIEAGHSPDRLTYHLILKMLCED 438
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 43/86 (50%)
Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
+ K K++ ++ + G SPD ++Y ++ C + KEM+ +G P
Sbjct: 400 FSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGIDPD 459
Query: 282 VITCTIVMHALEKAKQIYEALKVYEK 307
++T T+++H L + + + EA + ++
Sbjct: 460 LLTTTMLIHLLCRLEMLEEAFEEFDN 485
>gi|242095336|ref|XP_002438158.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
gi|241916381|gb|EER89525.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
Length = 607
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 115/265 (43%), Gaps = 28/265 (10%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY+ +V A L EL E+ + GY A M M T+A LV
Sbjct: 314 TYSTLVSAFLHCNNVALAMELFHEMAD--QGYPPDAVMYFTMISGLTQA-----GRLVDA 366
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
++A + K K L + +++LI G+C+ ++ A + +EM G PD +Y
Sbjct: 367 CNIAASMK-----KAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYN 421
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ C+ DF VD L M + GC+PSV+T ++H KA + EALK++ M
Sbjct: 422 TLLSCLCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEA 481
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+T +IYNT+I C E A+KL ++ E++ + T+
Sbjct: 482 RIQPNT----------------VIYNTLIDFLCKSREVDVAIKLFDEMRENNVPANVTTY 525
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMRE 396
LK K + +++ M+E
Sbjct: 526 NALLKGLQDKNMPEKAFELMDQMKE 550
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/329 (21%), Positives = 134/329 (40%), Gaps = 45/329 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T+N+++ ALG++ M EL + E S + D +L++ L K
Sbjct: 133 TFNSLLSALGRAGNLRGMTELFTSMREAS-------------VKPDIVTYGILLNRLCKA 179
Query: 192 NSVAHAYKVFLKFKDC---ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ--HGFSPD 246
V A KV + + I + ++ G CK + A + E + HG +P+
Sbjct: 180 GLVGDALKVLDRMSSPGSDVCADIVILNTVVDGLCKIGRLQDAIVFVDERMRQVHGCAPN 239
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+Y C + CR D ++ M+++G P+VIT ++ L + ++ AL +
Sbjct: 240 TVTYNCLADACCRVGDIDMACQIVERMEKEGVTPNVITMNTIVGGLCRVGRVGAALDFFR 299
Query: 307 KMKS------DDCLTDTSFYSSLIFILSKAVRF---------------LIYNTMISSACV 345
+ ++ + +T ++ S+ + + A+ ++Y TMIS
Sbjct: 300 EKRTTWLEARGNAVTYSTLVSAFLHCNNVALAMELFHEMADQGYPPDAVMYFTMISGLTQ 359
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+A + +++ K D + + + C KKR+ + L EM G+ P
Sbjct: 360 AGRLVDACNIAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAH---QLFEEMKGAGLQPD 416
Query: 406 ESTHKMLAEELEKKSLGNAKERIDELLTH 434
T+ L L K +A +DELL +
Sbjct: 417 VYTYNTLLSCLCKAGDFSA---VDELLGN 442
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 25/199 (12%)
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+PD ++ + R + R + M+E KP ++T I+++ L KA + +ALK
Sbjct: 128 APDVSTFNSLLSALGRAGNLRGMTELFTSMREASVKPDIVTYGILLNRLCKAGLVGDALK 187
Query: 304 VYEKMKS--DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
V ++M S D D I IL+ V L + A V +E ++RQ
Sbjct: 188 VLDRMSSPGSDVCAD-------IVILNTVVDGLCKIGRLQDAIVFVDE----RMRQV--- 233
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
C P+ T+ CC R+ D + ++ M +G+ P T + L +
Sbjct: 234 HGCAPNTVTYNCLADACC---RVGDIDMACQIVERMEKEGVTPNVITMNTIVGGLCRVG- 289
Query: 422 GNAKERIDELLTHATEQRT 440
R+ L E+RT
Sbjct: 290 -----RVGAALDFFREKRT 303
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 15/181 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K+ F +DEL + +V+ L+ K
Sbjct: 419 TYNTLLSCLCKAGDF-------SAVDELLGNMIDDGCQPSVV------TFGTLVHGYCKA 465
Query: 192 NSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
A K+F + I ++ I++ LI CK+R+ D A K EM ++ + +Y
Sbjct: 466 GKTDEALKIFRSMGEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMRENNVPANVTTY 525
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
++ + K + +M+E+ C P +T ++M L + + E LK + + +
Sbjct: 526 NALLKGLQDKNMPEKAFELMDQMKEERCTPDYVTMDVLMEWLPEIGET-ERLKCFMEQRD 584
Query: 311 D 311
+
Sbjct: 585 E 585
>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
Length = 690
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 121/265 (45%), Gaps = 28/265 (10%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY+ +V AL + G+ EL E ++S G+ A M M T+A L D
Sbjct: 320 TYSTLVGALLHTNNVGMAMELFHE--KMSEGHSPDAIMYFTMISGLTQA-GRLEDACSMA 376
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
+S+ A FK L ++ +++LI G+C+ ++ A + ++EM + G PD +Y
Sbjct: 377 SSMKEA-----GFK----LDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYN 427
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ C+ DF VD L +M + GC+PSVIT ++H K +I EAL++ M
Sbjct: 428 TLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDES 487
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+ +IYNT+I C R + A++L +++E S + T
Sbjct: 488 GIHPNN----------------VIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTF 531
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMRE 396
LK K + +++ MRE
Sbjct: 532 NALLKGLRDKNMPEKAFELMDQMRE 556
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 14/195 (7%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G+ + YN ++ + K+ +EL++E+ E V R D +
Sbjct: 381 EAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKE-------------VGIRPDVCTYN 427
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+ K A ++ K D S I F L+HG+CK K D A + ++ M +
Sbjct: 428 TLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDES 487
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G P+ V Y I+ C+ D EM+EK +V T ++ L +A
Sbjct: 488 GIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKA 547
Query: 302 LKVYEKMKSDDCLTD 316
++ ++M+ + C D
Sbjct: 548 FELMDQMREERCFPD 562
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/307 (19%), Positives = 129/307 (42%), Gaps = 41/307 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
+N+++ AL + V+++ ++ Y + ++V R D +L++ L K
Sbjct: 138 AFNSILAALAR----------VRDVPGMARIYALMQGCASV--RPDVVTYGILVNGLCKA 185
Query: 192 NSVAHAYKVF--LKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ--HGFSPD 246
V A +V + +D I + ++ G CK+ + A +++ HG P+
Sbjct: 186 GRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPN 245
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+Y C I+ +CR + +++M+ +G +++T ++ L +A + AL+ +
Sbjct: 246 TVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFR 305
Query: 307 KMKS--DDCLTDTSFYSSLIFIL-------------------SKAVRFLIYNTMISSACV 345
+ ++ + + YS+L+ L + ++Y TMIS
Sbjct: 306 EKRTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQ 365
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+A + ++E K D + + + C KKR+ + L++EM GI P
Sbjct: 366 AGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHE---AYELLQEMKEVGIRPD 422
Query: 406 ESTHKML 412
T+ L
Sbjct: 423 VCTYNTL 429
>gi|242094080|ref|XP_002437530.1| hypothetical protein SORBIDRAFT_10g028820 [Sorghum bicolor]
gi|241915753|gb|EER88897.1| hypothetical protein SORBIDRAFT_10g028820 [Sorghum bicolor]
Length = 540
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 104/221 (47%), Gaps = 26/221 (11%)
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
+++++L++GW + R+ D +K M G P V+Y FI+ YC + + L +
Sbjct: 185 RVYNILLNGWSRARRLDKVEKLWAAMRDEGVRPTVVTYGTFIDAYCVMRRPDQAMTLLDQ 244
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF------- 325
M+E+G + +++TC +++AL +A + +A KV EK + S ++SL+F
Sbjct: 245 MREEGIQANLLTCNPIVYALAQAGRFGDAHKVLEKFPLYGVSPNISTFNSLVFGYCKHGD 304
Query: 326 --------------ILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+S R Y M+ S E G + L K+ + PD T+
Sbjct: 305 LAGASGVLKAMLGRGISPTARTYNYFFMVFSRNRSIELG--MNLYVKMVSNGYAPDQFTY 362
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+KM C R++ L L +++EM + G P ++T ML
Sbjct: 363 HLLIKMLCEANRLE---LTLQMLQEMRNNGFEPDQATSTML 400
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 19/215 (8%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
+++ + + A K +++ +G SP+ ++ + YC+ D LK M +G
Sbjct: 260 IVYALAQAGRFGDAHKVLEKFPLYGVSPNISTFNSLVFGYCKHGDLAGASGVLKAMLGRG 319
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337
P+ T + + I + +Y KM S+ D Y LI +L +A R +
Sbjct: 320 ISPTARTYNYFFMVFSRNRSIELGMNLYVKMVSNGYAPDQFTYHLLIKMLCEANRLEL-- 377
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
L++ Q++ + +PD T + + C + ++ +M
Sbjct: 378 --------------TLQMLQEMRNNGFEPDQATSTMLIHLLCRRHHFEEAFAEFE---QM 420
Query: 398 LSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
+GIVPQ T++ML +EL++ L +++ +L+
Sbjct: 421 FERGIVPQYITYRMLMKELKRLGLVKLVQKLADLM 455
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 23/202 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI------------DELSNGYV---SLAAMSTVMRRL 176
T N +V AL ++ +FG +++++ + L GY LA S V++ +
Sbjct: 256 TCNPIVYALAQAGRFGDAHKVLEKFPLYGVSPNISTFNSLVFGYCKHGDLAGASGVLKAM 315
Query: 177 DTRAMSVLMDT------LVKRN-SVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKS 228
R +S T + RN S+ +++K Q + +LI C+ +
Sbjct: 316 LGRGISPTARTYNYFFMVFSRNRSIELGMNLYVKMVSNGYAPDQFTYHLLIKMLCEANRL 375
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+ + ++EM +GF PD + T I CR F + ++M E+G P IT ++
Sbjct: 376 ELTLQMLQEMRNNGFEPDQATSTMLIHLLCRRHHFEEAFAEFEQMFERGIVPQYITYRML 435
Query: 289 MHALEKAKQIYEALKVYEKMKS 310
M L++ + K+ + M+S
Sbjct: 436 MKELKRLGLVKLVQKLADLMRS 457
>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 927
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 127/271 (46%), Gaps = 24/271 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
S+LMD K +A+ VF + D I S +++ I+G CK ++ AQ +K+ +
Sbjct: 527 SILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVE 586
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
GF P ++Y ++ + +E +EM E G P+VIT T +++ K
Sbjct: 587 KGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDL 646
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAV------RFLIYNTMIS 341
ALK+ +M++ D + Y +LI ++ S+ + +IYN++IS
Sbjct: 647 ALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLIS 706
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
+ AL L++++ + D +T+ + + R+ +L L+L EM +KG
Sbjct: 707 GYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRL---VLALDLYSEMSAKG 763
Query: 402 IVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
I+P + +L L K L NA++ + E+
Sbjct: 764 IIPDIIIYTVLINGLCGKGQLENAQKILAEM 794
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 27/251 (10%)
Query: 184 LMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
+MD +K SV+ A + + + +S + + LI+G+CK +D A K EM G
Sbjct: 599 IMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKG 658
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
D +Y I+ +C+++D + E+ + G P+ + ++ + AL
Sbjct: 659 LELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAAL 718
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSA 343
+ ++M + D Y++LI L K R +IY +I+
Sbjct: 719 NLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGL 778
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML--VLNLMREMLSKG 401
C + + NA K+ ++E DS P+ + + K G L L EML KG
Sbjct: 779 CGKGQLENAQKILAEMERDSITPNVPIYNALI-----AGHFKAGNLQEAFRLHNEMLDKG 833
Query: 402 IVPQESTHKML 412
+ P ++T+ +L
Sbjct: 834 LTPNDTTYDIL 844
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 80/361 (22%), Positives = 140/361 (38%), Gaps = 40/361 (11%)
Query: 54 PDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALK 113
P E + + V+ + E R+ +S + +V V+ L K Y DK+V AL+
Sbjct: 312 PSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNV-VVATTLVKGYCKQDKLVSALE 370
Query: 114 CFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM 173
F + G TY ++E K+ ++L ++ N ++ +++++
Sbjct: 371 FFD---KMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKN-KNICPTVFIVNSLI 426
Query: 174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQK 233
R +K S A K+F + C + ++ L+ CK K A
Sbjct: 427 R------------GFLKVESREEASKLFDEAVACDIANIFTYNSLLSWLCKEGKMSEATT 474
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
++M G +P VSY I +CR+ + +M + G KP+VIT +I+M
Sbjct: 475 LWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYF 534
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
K A V+++M D+ + + F YN I+ C A
Sbjct: 535 KNGDTEYAFYVFDRM-VDENIVPSDF---------------TYNIKINGLCKVGRTSEAQ 578
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKM 411
+ +K E P C T+ + +K+G + L REM G+ P T+
Sbjct: 579 DMLKKFVEKGFVPVCLTYNSIM-----DGFIKEGSVSSALTAYREMCESGVSPNVITYTT 633
Query: 412 L 412
L
Sbjct: 634 L 634
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 100/230 (43%), Gaps = 30/230 (13%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKF------KDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
++ L+ LVK + + A +V+ K DC ++ +++ K + A+K
Sbjct: 212 LNFLLTALVKNDMIYEAREVYEKMVLKGVHGDCFTVH-----IMMRANLKDNNEEEAKKF 266
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
E G D +Y+ I+ +C+ D LK+M++KG PS T T V+ A K
Sbjct: 267 FLEAKSRGVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVK 326
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
+ EAL++ ++M S C + ++ T++ C + + +AL+
Sbjct: 327 QGNMVEALRLKDEMVS--C--------------GVQMNVVVATTLVKGYCKQDKLVSALE 370
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
K+ E+ P+ T+A ++ CC M +L +M +K I P
Sbjct: 371 FFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAY---DLYTQMKNKNICP 417
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 45/117 (38%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS Q + LI G K + A EM G PD + YT I C +
Sbjct: 729 ISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQ 788
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
L EM+ P+V ++ KA + EA +++ +M + + Y LI
Sbjct: 789 KILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILI 845
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 13/167 (7%)
Query: 157 DELSNGYVSL----AAMSTVMRRL------DTRAMSVLMDTLVKRNSVAHAYKVFLKFK- 205
+ L +GY +L AA++ R L D + + L+D L+K + A ++ +
Sbjct: 702 NSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSA 761
Query: 206 DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
I I+ VLI+G C + + AQK + EM + +P+ Y I + + + ++
Sbjct: 762 KGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKAGNLQE 821
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
EM +KG P+ T I+++ K K ALK +K D
Sbjct: 822 AFRLHNEMLDKGLTPNDTTYDILING--KIKGGNSALKSLLSLKFKD 866
>gi|222641466|gb|EEE69598.1| hypothetical protein OsJ_29150 [Oryza sativa Japonica Group]
Length = 579
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 141/343 (41%), Gaps = 43/343 (12%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI--DELSNGYVSLAAMSTVMR 174
F +A G+ H P++ + +L ++ F L+ L+ ++ LS G L +
Sbjct: 109 FLFAGELPGFSHHPDSLLVLANSLAGARLFPLLRSLLSDLPPSALSRGLFPLLFRAYSRA 168
Query: 175 RLDTRAMSV------------------LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD 216
RL A+ L+ L + V + + F + +S++ +
Sbjct: 169 RLPEDAIRAFSSMAGFGFPPTIADFHSLLFALSRNGLVEYGERFFRESTAQFDVSAKAYT 228
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
+LI GW +K + A+ EM + G D Y I+ CR D L MQ+
Sbjct: 229 ILISGWAVVKKPENARSLFDEMVKRGVELDVHVYNALIDALCRGGDITSAQEQLSNMQKS 288
Query: 277 -GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------SK 329
G P+ T +HA +K + AL+V ++M + + Y+++I +L ++
Sbjct: 289 HGLVPNAATYGPFLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDLGEINE 348
Query: 330 AVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
A L YNT++++ C E AL+L +++++ C PD ++ LK
Sbjct: 349 AYNILDEITTQGEKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNMLLK 408
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
M R + V + M + +G P +T+ ++ L K
Sbjct: 409 MLISVGRFDTAIEVWDGMEK---RGFHPGAATYAVMIHGLASK 448
>gi|302811221|ref|XP_002987300.1| hypothetical protein SELMODRAFT_125836 [Selaginella moellendorffii]
gi|300144935|gb|EFJ11615.1| hypothetical protein SELMODRAFT_125836 [Selaginella moellendorffii]
Length = 511
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 143/321 (44%), Gaps = 51/321 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI-------DELSNGYV---------SLAAMST--VM 173
T+N ++++L K+ KF ++V E+ +EL+ G + +L A S VM
Sbjct: 184 TFNTVIQSLSKAGKFKEALDIVDEMVWLQCSPNELTFGLLVHGLCKAKRALEAESVLEVM 243
Query: 174 RRL----DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS----QIFDVLIHGWCKT 225
R+ D ++ L+ +K V A ++F + S + F+++IHG CK
Sbjct: 244 DRVGCVPDVVLLTALISGHLKEGRVDDASRLFERMLSGGQRWSKPNLRTFNIMIHGLCKA 303
Query: 226 RKSDYAQKAMKEMFQH-GFSPDGVSYTCFIEHYCREKDFRKVDYTL-KEMQEKGCKPSVI 283
K A ++ M G +PD ++ I+ + + D + L +EM GC P +
Sbjct: 304 NKVGEADALVRRMEDECGVAPDEFTFNTIIDGHFKAGDSKGAFKQLFQEMSRFGCHPDSV 363
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSD--DCLTDTSFYSSLIFILSKAVRFLIYNTMIS 341
T TI++ K ++I+EAL++ E+M + C DT L +N ++
Sbjct: 364 TFTILVSESCKQRRIHEALELVEQMTKNKGGCAPDT----------------LSFNALLG 407
Query: 342 SACV--RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
C R EE A + E C PD THA ++ CC ++ ++ L ++ EML
Sbjct: 408 CLCCDGRLEEAVAKFWGEMRERRECWPDAVTHALLVRQCCKQRNIE---LACRIVDEMLH 464
Query: 400 KGIVPQESTHKMLAEELEKKS 420
+G VP ML ++ S
Sbjct: 465 RGFVPTPGIASMLVNLIQSGS 485
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 26/207 (12%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ L K HA VF K K S+S ++++I K +++ A + +EM
Sbjct: 122 LIGGLCKVGKYDHAMAVFRKMKLPSSMS---YNIVIAACVKRGRNEAAVELFREMKVKKR 178
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD ++ I+ + F++ + EM C P+ +T +++H L KAK+ EA
Sbjct: 179 VPDIFTFNTVIQSLSKAGKFKEALDIVDEMVWLQCSPNELTFGLLVHGLCKAKRALEAES 238
Query: 304 VYEKMKSDDCLTDTSFYSSLIF-----------------ILSKAVRF-----LIYNTMIS 341
V E M C+ D ++LI +LS R+ +N MI
Sbjct: 239 VLEVMDRVGCVPDVVLLTALISGHLKEGRVDDASRLFERMLSGGQRWSKPNLRTFNIMIH 298
Query: 342 SACVRSEEGNALKLRQKIEED-SCKPD 367
C ++ G A L +++E++ PD
Sbjct: 299 GLCKANKVGEADALVRRMEDECGVAPD 325
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 20/206 (9%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T N +V++L K LV + EL +G + DT + L+D L K
Sbjct: 10 KTCNIVVDSLCKGG-------LVDDAAELVHGMMDKGPYP------DTVTCNSLLDGLFK 56
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP--DG 247
N V HA K++ K + + + +++L+HG CK + A + + + +P
Sbjct: 57 VNKVEHAMKLYEKMSRSFVKADAFTYNILLHGLCKGGRIQEACQKLSAALRDREAPVRHE 116
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+ Y I C+ + ++M+ PS ++ IV+ A K + A++++ +
Sbjct: 117 LLYEALIGGLCKVGKYDHAMAVFRKMK----LPSSMSYNIVIAACVKRGRNEAAVELFRE 172
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRF 333
MK + D ++++I LSKA +F
Sbjct: 173 MKVKKRVPDIFTFNTVIQSLSKAGKF 198
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 30/178 (16%)
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M +KG P +TC ++ L K ++ A+K+YEKM D Y+ L+ L K R
Sbjct: 35 MMDKGPYPDTVTCNSLLDGLFKVNKVEHAMKLYEKMSRSFVKADAFTYNILLHGLCKGGR 94
Query: 333 F---------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
L+Y +I C + +A+ + +K++ P ++
Sbjct: 95 IQEACQKLSAALRDREAPVRHELLYEALIGGLCKVGKYDHAMAVFRKMK----LPSSMSY 150
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
+ C + R + + L REM K VP T + + L K G KE +D
Sbjct: 151 NIVIAACVKRGRNE---AAVELFREMKVKKRVPDIFTFNTVIQSLSKA--GKFKEALD 203
>gi|9755668|emb|CAC01820.1| putative protein [Arabidopsis thaliana]
Length = 532
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 145/342 (42%), Gaps = 46/342 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR- 175
F WA Q GY+ + Y++M+ LGK +KF W L+ E+ + S V+ + ++R+
Sbjct: 108 FVWAGKQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKY 167
Query: 176 ----------------------LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+ L+ L + +V+ A + KD ++
Sbjct: 168 CAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAK 227
Query: 214 IFDVLIHGWCKTRKSDY-AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
F+++++GWC S A++ EM G D VSY+ I Y + KV
Sbjct: 228 SFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDR 287
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL-TDTSFYSSLIFILSKAV 331
M+++ +P V+HAL KA + EA + + M+ + + + Y+SLI L KA
Sbjct: 288 MKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKAR 347
Query: 332 RF----LIYNTMISSA-------------CVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
+ +++ M+ +R+ E +L K+ + C+P ET+
Sbjct: 348 KTEEAKQVFDEMLEKGLFPTIRTYHAFMRILRTGE-EVFELLAKMRKMGCEPTVETYIML 406
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ C R +D VL L EM K + P S++ ++ L
Sbjct: 407 IRKLC---RWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGL 445
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 34/167 (20%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKA 234
D + + ++ L K + V+ A + ++ + + ++ LI CK RK++ A++
Sbjct: 296 DRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQV 355
Query: 235 MKEMFQHGFSPDGVSYTCF-------------------------IEHY-------CREKD 262
EM + G P +Y F +E Y CR +D
Sbjct: 356 FDEMLEKGLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRD 415
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
F V EM+EK P + + +++H L +I EA Y++MK
Sbjct: 416 FDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMK 462
>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Brachypodium distachyon]
Length = 877
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 131/318 (41%), Gaps = 40/318 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL--DTRAMS 182
G + T TY ++ LG+ + L+ E+ E RRL + + +
Sbjct: 324 GLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRE---------------RRLPPNVQIYN 368
Query: 183 VLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
++D L K S + A V + F + F LI G C+ + A++ ++E +
Sbjct: 369 SVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRW 428
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
+P+ SYT I +C + L EM E+G P V+T ++H L A Q+ EA
Sbjct: 429 ELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEA 488
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSK-----AVRFLI--------------YNTMISS 342
L V EKM + L D + Y+ LI L K A R LI Y T+I
Sbjct: 489 LLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDG 548
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
A K+ + +E+ PD + +K C M + + ++ MR++ G
Sbjct: 549 FIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKV---GR 605
Query: 403 VPQESTHKMLAEELEKKS 420
+P E T+ L K+
Sbjct: 606 IPDEFTYTTLIGGYAKQG 623
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 106/242 (43%), Gaps = 23/242 (9%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ ++VLI G+C+ + EM G P V+Y + R+ D K+ L
Sbjct: 293 NAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLL 352
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL--- 327
EM+E+ P+V V+ AL K + +AL V ++M + C D +S+LI L
Sbjct: 353 SEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQE 412
Query: 328 ---SKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+A R L Y ++I CVR E A L ++ E PD T
Sbjct: 413 GRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTF 472
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDE 430
+ ++ + +LV +M ++ ++P + + +L L +KK L A+ I+E
Sbjct: 473 GALIHGLVVAGQVSEALLV---REKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEE 529
Query: 431 LL 432
+L
Sbjct: 530 ML 531
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 121/300 (40%), Gaps = 29/300 (9%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMSTVMRRLDTRA 180
YN ++ L K K L++E+ E L +G++ ++ + +
Sbjct: 507 YNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFME 566
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSD 229
+ +V N++ Y F + + S + + LI G+ K
Sbjct: 567 QKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNIS 626
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
A + +M + P+ V+Y+ I YC+ D + M+ +G P+VIT TI++
Sbjct: 627 GALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILI 686
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE 349
+L K ++ A +E M + C + SL+ L ++ +I ++ SS +
Sbjct: 687 GSLFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCNSMASII-SSHCSSTVNLHGK 745
Query: 350 GNALKLRQKIEEDSCKP-DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
G L + + + D C P + +A +C H + L+L +M +KG P +T
Sbjct: 746 GALLDIFRALVNDRCDPRNSAYNAIIFSLCIHNMLGE----ALDLKNKMANKGYKPDSAT 801
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 95/244 (38%), Gaps = 20/244 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS-SQIFDVLIHGWCKTRKSDYAQKAM 235
D L+ LV V+ A V K L + I++VLI G CK + A+ +
Sbjct: 468 DVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLI 527
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM + PD YT I+ + R + + + M++KG P V+ ++ +
Sbjct: 528 EEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQF 587
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ EA++ M+ + D Y T+I + AL L
Sbjct: 588 GMMNEAVECMSTMRKVGRIPDE----------------FTYTTLIGGYAKQGNISGALSL 631
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ + C+P+ ++ + C ++ D L M S+G+ P T+ +L
Sbjct: 632 LCDMMKRRCQPNVVAYSSLINGYC---KLGDTDAAECLFGSMESQGLFPNVITYTILIGS 688
Query: 416 LEKK 419
L KK
Sbjct: 689 LFKK 692
>gi|147821100|emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
Length = 844
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 112/249 (44%), Gaps = 22/249 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ ++ V + + A +VF + D + +L+ G+CK + A K M EM +
Sbjct: 280 TTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEE 339
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
+ P+ V+Y IE YC+EK +V L +M EK PS C V+ L + ++
Sbjct: 340 NRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEV 399
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------------LIYNTMISS 342
A ++++K+ +C D + S+LI L K + L YN +I+
Sbjct: 400 ACELWKKLLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSIPSTLTYNALIAG 459
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C E A +L + E C P+ T+ +K C ++G+ V M EML G
Sbjct: 460 MCEGGELPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRV---MEEMLDNGC 516
Query: 403 VPQESTHKM 411
+P ++T+ +
Sbjct: 517 LPNKATYAI 525
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 93/399 (23%), Positives = 162/399 (40%), Gaps = 76/399 (19%)
Query: 84 SEDHETDVDKVSEILR--------KRYP---SPDKVVE----------ALKCFCFTWAKT 122
S H VD S +L+ K +P SP +VV AL+ F K
Sbjct: 69 SHHHLAAVDSKSTLLKSYTVTPPIKPWPQRLSPKRVVSMISRQQNLDLALQIFDHA-GKF 127
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELS-----NGYVSLA---------- 167
+ H ETY AM+E L K++ F M L+ ++ + N ++++
Sbjct: 128 HRNFAHNYETYLAMIEKLSKARAFEPMETLISQLHKSQIKCGENLFITVIRNYGFAGRPK 187
Query: 168 -AMSTVMR------RLDTRAMSVLMDTLV--KRNSVAHAYKVFLKFKDC---ISLSSQIF 215
A+ T +R + R+ + L++TLV KR + H L FK+C + +F
Sbjct: 188 LAIRTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVH-----LMFKNCRKKFGIVPNVF 242
Query: 216 --DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++L+ CK D A + ++EM GF P+ V+YT + Y + D E+
Sbjct: 243 TCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEI 302
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
++G P T TI+M K + +A+KV ++M+ + +
Sbjct: 303 LDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPND---------------- 346
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ Y +I + C + G L L + E P R + M C + +++ + L
Sbjct: 347 VTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVE---VACEL 403
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDEL 431
+++L K P + L L K+ + A++ DE
Sbjct: 404 WKKLLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEF 442
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 3/186 (1%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
D S L+ L K V A K+F +F+ S+ ++ LI G C+ + A +
Sbjct: 415 DNAITSTLIHWLCKEGKVWEARKLFDEFEKGSIPSTLTYNALIAGMCEGGELPEAARLWD 474
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M + G P+ +Y I+ +C+ + R+ ++EM + GC P+ T I++ L +
Sbjct: 475 NMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYAILLEGLYELG 534
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
E V M S D + +F+ + ++ T ++ CV S+ A+ R
Sbjct: 535 LEGEVTNVLS-MASSRGGVDAECWG--VFLAKTSQVLVVGGTCVNWGCVPSKTLLAVSGR 591
Query: 357 QKIEED 362
+ +D
Sbjct: 592 MRELQD 597
>gi|225450630|ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial [Vitis vinifera]
gi|296089757|emb|CBI39576.3| unnamed protein product [Vitis vinifera]
Length = 586
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 136/314 (43%), Gaps = 35/314 (11%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F + + G + T N +V+AL K +++E+ + G++
Sbjct: 228 FKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAM--GFIP----------- 274
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS-SQIFDVLIHGWCKTRKSDYAQKAM 235
+ + ++ V + + A +VF + D + + +L+ G+CK + A K M
Sbjct: 275 NVVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVM 334
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM ++ P+ V+Y IE YC+EK +V L +M EK PS C V+ L +
Sbjct: 335 DEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEE 394
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------------LIYN 337
++ A ++++K+ +C D + S+LI L K + L YN
Sbjct: 395 GKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSIPSTLTYN 454
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+I+ C E A +L + E C P+ T+ +K C ++G+ V M EM
Sbjct: 455 ALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRV---MEEM 511
Query: 398 LSKGIVPQESTHKM 411
L G +P ++T+ +
Sbjct: 512 LDNGCLPNKATYAI 525
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 93/399 (23%), Positives = 162/399 (40%), Gaps = 76/399 (19%)
Query: 84 SEDHETDVDKVSEILR--------KRYP---SPDKVVE----------ALKCFCFTWAKT 122
S H VD S +L+ K +P SP +VV AL+ F K
Sbjct: 69 SHHHLAAVDSKSTLLKSYTVTPPIKPWPQRLSPKRVVSMISRQQNLDLALQIFDHA-GKF 127
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELS-----NGYVSLA---------- 167
+ H ETY AM+E L K++ F M L+ ++ + N ++++
Sbjct: 128 HRNFAHNYETYLAMIEKLSKARAFEPMETLISQLHKSQIKCGENLFITVIRNYGFAGRPK 187
Query: 168 -AMSTVMR------RLDTRAMSVLMDTLV--KRNSVAHAYKVFLKFKDC---ISLSSQIF 215
A+ T +R + R+ + L++TLV KR + H L FK+C + +F
Sbjct: 188 LAIRTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVH-----LMFKNCRKKFGIVPNVF 242
Query: 216 --DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++L+ CK D A + ++EM GF P+ V+YT + Y + D E+
Sbjct: 243 TCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEI 302
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
++G P T TI+M K + +A+KV ++M+ + +
Sbjct: 303 LDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPND---------------- 346
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ Y +I + C + G L L + E P R + M C + +++ + L
Sbjct: 347 VTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVE---VACEL 403
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDEL 431
+++L K P + L L K+ + A++ DE
Sbjct: 404 WKKLLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEF 442
>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
Length = 847
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 19/200 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ +I G+CK K D A + ++ M+ +G +PD ++Y + C+ ++V+ T +EM
Sbjct: 362 FNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMI 421
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
KGC+P+ IT I++ K Q+ EA V +M D + DT +
Sbjct: 422 LKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDT----------------I 465
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+NT+I C + A L QK++E +T + K M+ + +
Sbjct: 466 SFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQ---MAEKIF 522
Query: 395 REMLSKGIVPQESTHKMLAE 414
EM+SKG P T+++L +
Sbjct: 523 GEMISKGYKPDLYTYRVLVD 542
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 107/263 (40%), Gaps = 25/263 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D + LM L K + V A + + + CI ++ +I G+CK A +
Sbjct: 183 DVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIP-DDFTYNTIIDGYCKRDMLQEATEL 241
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+K+ GF PD V+Y I C E D + E Q K KP ++ ++ L +
Sbjct: 242 LKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCR 301
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAV------RFLI 335
I AL+V +M D C D Y+ +I +++ A+
Sbjct: 302 QGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFT 361
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
+NTMI C R + +AL+L +++ PD T+ L C + K+ V
Sbjct: 362 FNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKE---VNETFE 418
Query: 396 EMLSKGIVPQESTHKMLAEELEK 418
EM+ KG P T+ +L E K
Sbjct: 419 EMILKGCRPNAITYNILIENFCK 441
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/291 (19%), Positives = 123/291 (42%), Gaps = 27/291 (9%)
Query: 152 LVKEIDELSNGYVSLAAMSTVMRR---LDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDC 207
+V+ + +GY + ++RR D + ++ L ++ + + + K K
Sbjct: 86 VVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRG 145
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+S++ ++ I G C+ + + A ++ M + +PD V+Y + C++ ++
Sbjct: 146 MSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAY-IAPDVVTYNTLMRGLCKDSKVQEAA 204
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
L+ M +GC P T ++ K + EA ++ + + D Y SLI L
Sbjct: 205 QYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGL 264
Query: 328 -----------------SKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
+K ++ ++YN+++ C + +AL++ ++ ED C PD
Sbjct: 265 CAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDI 324
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
T+ + C + D +V+N + + KG +P T + + K+
Sbjct: 325 WTYNIVINGLCKMGNISDAAVVMN---DAIVKGYLPDVFTFNTMIDGYCKR 372
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 14/178 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++E K + +++E S V ++ V DT + + L+ +
Sbjct: 431 TYNILIENFCK----------INQLEEASGVIVRMSQDGLVP---DTISFNTLIHGFCRN 477
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ AY +F K + S ++ F++LI + A+K EM G+ PD +Y
Sbjct: 478 GDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTY 537
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
++ C+ + + L EM KG PS+ T V+++L ++ EA+ + M
Sbjct: 538 RVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIM 595
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/230 (16%), Positives = 90/230 (39%), Gaps = 23/230 (10%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ ++ ++ T D A K M G +PD ++T I+ +C L
Sbjct: 9 AAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALRLL 68
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK- 329
+ + E+GC + V+ L Y+A ++++M D D + +++++ L +
Sbjct: 69 RSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALCQK 128
Query: 330 ------------------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+V N I C A+ L + ++ PD T+
Sbjct: 129 GDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDA-YIAPDVVTY 187
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
++ C ++++ +R M+++G +P + T+ + + K+ +
Sbjct: 188 NTLMRGLCKDSKVQEAA---QYLRRMMNQGCIPDDFTYNTIIDGYCKRDM 234
>gi|15228788|ref|NP_191813.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122214682|sp|Q3EAF8.1|PP294_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g62540, mitochondrial; Flags: Precursor
gi|332646841|gb|AEE80362.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 599
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/367 (20%), Positives = 151/367 (41%), Gaps = 53/367 (14%)
Query: 69 SLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH 128
+L N ++ + L H+ V+ + R P A + FC WA + G+ H
Sbjct: 143 ALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKP-------AFRFFC--WAAERQGFAH 193
Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR-------------- 174
TYN+M+ L K+++F M +++E+ + G +++ + M+
Sbjct: 194 ASRTYNSMMSILAKTRQFETMVSVLEEMG--TKGLLTMETFTIAMKAFAAAKERKKAVGI 251
Query: 175 ---------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKT 225
++ ++ L+D+L + A +F K K+ + + + VL++GWC+
Sbjct: 252 FELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRV 311
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
R A + +M HG PD V++ +E R M+ KG P+V +
Sbjct: 312 RNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSY 371
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
TI++ K + A++ ++ M D + +Y +I+
Sbjct: 372 TIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAA----------------VYTCLITGFGT 415
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ + +L ++++E PD +T+ +K+ ++K + G + N +M+ I P
Sbjct: 416 QKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYN---KMIQNEIEPS 472
Query: 406 ESTHKML 412
T M+
Sbjct: 473 IHTFNMI 479
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 38/270 (14%)
Query: 131 ETYNAMVEALGKSK---KFGLMWELVKE--------IDELSNGYVSLAAMSTVMR----- 174
ET N ++++LG++K + ++++ +KE L NG+ + + R
Sbjct: 265 ETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDM 324
Query: 175 -----RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CISLSSQIFDVLIHGWCKTR 226
+ D A +V+++ L++ + A K+F K C ++ S + ++I +CK
Sbjct: 325 IDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRS--YTIMIRDFCKQS 382
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
+ A + +M G PD YTC I + +K V LKEMQEKG P T
Sbjct: 383 SMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYN 442
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDC--------LTDTSFYSSLIFILSKAVRFLIYNT 338
++ + K ++Y KM ++ + S++ + + + +AV ++
Sbjct: 443 ALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAV----WDE 498
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDC 368
MI + + +R I E + C
Sbjct: 499 MIKKGICPDDNSYTVLIRGLISEGKSREAC 528
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 14/161 (8%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
+G Y ++ G KK ++EL+KE+ E G+ D + +
Sbjct: 397 SGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQE--KGHPP-----------DGKTYNA 443
Query: 184 LMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ + + H +++ K ++ I S F++++ + R + + EM + G
Sbjct: 444 LIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKG 503
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
PD SYT I E R+ L+EM +KG K +I
Sbjct: 504 ICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLI 544
>gi|359491363|ref|XP_002265397.2| PREDICTED: pentatricopeptide repeat-containing protein At5g60960,
mitochondrial-like [Vitis vinifera]
Length = 516
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/385 (23%), Positives = 161/385 (41%), Gaps = 56/385 (14%)
Query: 97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI 156
IL+ SPD L + W + ++H+ ET + V+ G+ K F + E++ +
Sbjct: 110 ILQTLNTSPDAGRTVLGFY--KWLSSNPKFVHSDETISFFVDYFGRRKDFKAIHEVLMDG 167
Query: 157 DELSNGYVSLAAMSTVMR--------------------RLDTRAMSVLMDTLVKRNSVAH 196
+ +A+ ++R R D ++++++ L + +H
Sbjct: 168 RNFAGAKTLESAIDRLVRAGRATQVVSFFDRMEVDYGFRRDRESLTMVVSKLCEHGFASH 227
Query: 197 AYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE- 255
A KV + I + I D+LI GWC K D A++ +EMF+ GF ++Y ++
Sbjct: 228 AEKVVKNVANEIFPNETICDLLIKGWCVDGKLDEARRLAEEMFRGGFEIGTMAYNSILDC 287
Query: 256 --HYCREKD-FR---KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
CR+KD FR + + L +M G +V T +++ L K ++ +A+K++ +M
Sbjct: 288 ICKLCRKKDPFRLESEAEKILVDMDVAGVPRNVETFNVLITNLCKIRKTEDAMKLFYRMG 347
Query: 310 SDDCLTDTSFYSSLIFILSKAVRFL---------------------IYNTMISSACVRSE 348
C + + + L L +A R Y I C
Sbjct: 348 EWGCYPNETTFLVLTRSLYQAARVGEGDEMIDRMKSAGFGNALDKKAYYEFIKILCGIER 407
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSL-KMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
+A+ L K++ED CKP +T+ + K+C H + K L E +++G VP ES
Sbjct: 408 IDHAMSLFSKMKEDGCKPGIKTYDLLMGKLCAHGRLDKANA----LFSEAVNRG-VPVES 462
Query: 408 THKMLAEELEKKSLGNAKERIDELL 432
L KK KE+ E L
Sbjct: 463 KAYKLDPRFVKKPTVAKKEKKRETL 487
>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Cucumis sativus]
Length = 757
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 134/313 (42%), Gaps = 50/313 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAA--MSTVMR 174
F WA+ + GY HT ++Y +M+E LG+++ + I++ S G V L A +++MR
Sbjct: 99 FNWAQ-EMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMR 157
Query: 175 RLDTRAM-----------------------SVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211
+ + + L+ L+KR A KV+ + ++
Sbjct: 158 NFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVT 217
Query: 212 SQ--IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
F++LI G+C D + ++ + G PD V+Y ++ CR
Sbjct: 218 PDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNV 277
Query: 270 LKEMQEKGC--KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+K M +K P+V+T T ++ ++I +AL V+E+M + + Y++LI L
Sbjct: 278 VKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGL 337
Query: 328 SKAVRF--------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
+A +F +NT++ C +ALK+ +++ E +PD
Sbjct: 338 CEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPD 397
Query: 368 CETHARSLKMCCH 380
T++ ++ C
Sbjct: 398 SATYSALVRSLCQ 410
>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
Length = 448
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 111/244 (45%), Gaps = 29/244 (11%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC--ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ L+ V++ AY +F K C S S + LI+G+CK R A + + EM
Sbjct: 2 NCLLSAFVRKKKAQEAYDLF-KNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEME 60
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTL---KEMQEKGCKPSVITCTIVMHALEKAK 296
+ G P Y I+ C D +VD L ++MQ + C PSVIT TI++ AL K+
Sbjct: 61 KRGIVPHNAVYNTIIKGLC---DNGRVDSALVHYRDMQ-RHCAPSVITYTILVDALCKSA 116
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
+I +A + E M C A + YNT+I+ C A+ L
Sbjct: 117 RISDASLILEDMIEAGC----------------APNVVTYNTLINGFCKLGNMDEAVVLF 160
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ E+SC PD T+ + C ++R +DG L++EM+ G P T+ L + L
Sbjct: 161 NQMLENSCSPDVFTYNILIDGYCKQERPQDGA---KLLQEMVKYGCEPNFITYNTLMDSL 217
Query: 417 EKKS 420
K
Sbjct: 218 VKSG 221
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 25/242 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKV--FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ LMD+LVK A+ + + +DC S F+++I +CK + D A + + M
Sbjct: 211 NTLMDSLVKSGKYIDAFNLAQMMLRRDC-KPSHFTFNLMIDMFCKVGQLDLAYELFQLMT 269
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G PD +Y I CR L+ M E GC P V+T ++ L KA Q+
Sbjct: 270 DRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVD 329
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMI 340
EA +VYE +++ D S+LI L K+ R + Y +I
Sbjct: 330 EAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILI 389
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
C + +L ++ + C P T++ + C R++DG + L++ ML +
Sbjct: 390 HGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCM---LLKTMLER 446
Query: 401 GI 402
G+
Sbjct: 447 GV 448
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 136/311 (43%), Gaps = 51/311 (16%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAM-STVMR------RLDT-----R 179
TY+ ++ K++ F + L+ E+++ G V A+ +T+++ R+D+ R
Sbjct: 35 TYSTLINGFCKARDFQQAYRLLDEMEK--RGIVPHNAVYNTIIKGLCDNGRVDSALVHYR 92
Query: 180 AM-----------SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ----IFDVLIHGWCK 224
M ++L+D L K ++ A L +D I ++ LI+G+CK
Sbjct: 93 DMQRHCAPSVITYTILVDALCKSARISDAS---LILEDMIEAGCAPNVVTYNTLINGFCK 149
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
D A +M ++ SPD +Y I+ YC+++ + L+EM + GC+P+ IT
Sbjct: 150 LGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFIT 209
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------- 333
+M +L K+ + +A + + M DC ++ +I + K +
Sbjct: 210 YNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMT 269
Query: 334 --------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
YN MIS AC + +A +L +++ E C PD T+ + C ++
Sbjct: 270 DRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVD 329
Query: 386 DGMLVLNLMRE 396
+ V ++R
Sbjct: 330 EAYEVYEVLRN 340
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 24/193 (12%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
T G + TYN M+ ++ + +L++ + E A D
Sbjct: 269 TDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTE--------AGCPP-----DVVTY 315
Query: 182 SVLMDTLVKRNSVAHAYKVF--LK----FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ ++ L K + V AY+V+ L+ F D ++ S+ LI G CK+R+ D A+K +
Sbjct: 316 NSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCST-----LIDGLCKSRRLDDAEKLL 370
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM ++G +PD V+YT I +C+ K EM +KGC P+VIT +IV+ L K+
Sbjct: 371 REMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKS 430
Query: 296 KQIYEALKVYEKM 308
++ + + + M
Sbjct: 431 ARVRDGCMLLKTM 443
>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
Length = 728
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/358 (21%), Positives = 147/358 (41%), Gaps = 38/358 (10%)
Query: 115 FCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWE----------LVKEIDELSNGYV 164
+CF G+ H + + A +E KK G + + L K+ D L+ GY
Sbjct: 284 YCFN--AVIHGFCHDGQVHKA-IEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLT-GYY 339
Query: 165 SLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWC 223
L M+ + + S L+ L + V A+++F + KD ++ +++HG C
Sbjct: 340 MLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCC 399
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
+ + +M H F PD +Y+ I YCR + ++ + M G P+V+
Sbjct: 400 QHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVV 459
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----------- 332
TCTI++H I EA +K++ + Y +I L K +
Sbjct: 460 TCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYRVIIHGLCKVNKPNDMWGIFADM 519
Query: 333 --------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
++Y+ +I + A +L K+ ++ KP+ T+ + CH ++
Sbjct: 520 IKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKL 579
Query: 385 KDGMLVLNLMREMLSKGIVPQESTH-KMLAEELEKKSLGNAKERIDELLTHATEQRTF 441
+ V+ L + M+ +G+ P + ++A ++ ++ A E E+ T +F
Sbjct: 580 PE---VMTLFKHMIGEGLAPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSF 634
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 90/235 (38%), Gaps = 20/235 (8%)
Query: 115 FCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR 174
F F Q G + + TY ++ L K K MW + D + GYV
Sbjct: 478 FLFLDKVRQFGVVPSLCTYRVIIHGLCKVNKPNDMWGIFA--DMIKRGYVP--------- 526
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV--LIHGWCKTRKSDYAQ 232
DT S+++D VK + A++++ K D IF LI+G C K
Sbjct: 527 --DTVLYSIIIDGFVKALDLQEAFRLYYKMVD-EGTKPNIFTYTSLINGLCHDDKLPEVM 583
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
K M G +PD + YT I YC+ + + +EM+ +G T ++
Sbjct: 584 TLFKHMIGEGLAPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGF 643
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF----ILSKAVRFLIYNTMISSA 343
K + A E+M + Y+ LI I + +YN+M+ +
Sbjct: 644 SKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIVGYFKIGDEKKAMAMYNSMLQAG 698
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 104/250 (41%), Gaps = 50/250 (20%)
Query: 59 VIPSLASWVESLKLNEQSRISSHALSE-DHETDVDKVSEILRKRYPSPDKVVEALKCFCF 117
V+PSL ++ R+ H L + + D+ + + KR PD V+ ++
Sbjct: 489 VVPSLCTY----------RVIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSI----- 533
Query: 118 TWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE--------IDELSNGYV---SL 166
+ V+AL + F L +++V E L NG L
Sbjct: 534 --------------IIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKL 579
Query: 167 AAMSTVMRRLDTRAMS---VLMDTLV----KRNSVAHAYKVFLKFK-DCISLSSQIFDVL 218
+ T+ + + ++ +L +L+ KR+++ A ++F + + + +S S ++ L
Sbjct: 580 PEVMTLFKHMIGEGLAPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCL 639
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
I G+ K D AQ M+EM G +P V+YT I Y + D +K M + G
Sbjct: 640 IGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIVGYFKIGDEKKAMAMYNSMLQAGI 699
Query: 279 KPSV-ITCTI 287
P ++C +
Sbjct: 700 APDAKLSCIL 709
>gi|15228767|ref|NP_191806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181319|sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g62470, mitochondrial; Flags: Precursor
gi|7340718|emb|CAB82961.1| putative protein [Arabidopsis thaliana]
gi|34365579|gb|AAQ65101.1| At3g62470 [Arabidopsis thaliana]
gi|332646835|gb|AEE80356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 599
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/401 (20%), Positives = 162/401 (40%), Gaps = 60/401 (14%)
Query: 69 SLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH 128
+L N ++ + L H+ V+ + R P A + FC WA + G+ H
Sbjct: 143 ALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKP-------AFRFFC--WAAERQGFAH 193
Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR-------------- 174
TYN+M+ L K+++F M +++E+ + G +++ + M+
Sbjct: 194 DSRTYNSMMSILAKTRQFETMVSVLEEMG--TKGLLTMETFTIAMKAFAAAKERKKAVGI 251
Query: 175 ---------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKT 225
++ ++ L+D+L + A +F K K+ + + + VL++GWC+
Sbjct: 252 FELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRV 311
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
R A + +M G PD V++ +E R + M+ KG P+V +
Sbjct: 312 RNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSY 371
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--FILSKAVRFL--------- 334
TI++ K + A++ ++ M D + Y+ LI F K + +
Sbjct: 372 TIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQE 431
Query: 335 --------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
YN +I + +A ++ K+ ++ +P T +K + +
Sbjct: 432 KGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEM 491
Query: 387 GMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKER 427
G V EM+ KGI P ++++ +L L +G K R
Sbjct: 492 GRAVWE---EMIKKGICPDDNSYTVLIRGL----IGEGKSR 525
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 16/182 (8%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
+G Y ++ G KK ++EL+KE+ E G+ D + +
Sbjct: 397 SGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQE--KGHPP-----------DGKTYNA 443
Query: 184 LMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ + + HA +++ K ++ I S F++++ + R + + +EM + G
Sbjct: 444 LIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKG 503
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ--IYE 300
PD SYT I E R+ L+EM +KG K +I + Q I+E
Sbjct: 504 ICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFE 563
Query: 301 AL 302
L
Sbjct: 564 EL 565
>gi|297821162|ref|XP_002878464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324302|gb|EFH54723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 628
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/359 (21%), Positives = 149/359 (41%), Gaps = 53/359 (14%)
Query: 111 ALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMS 170
A + FC WA + G+ H TYN+M+ L K+++F M +++E+ + G +++ +
Sbjct: 187 AFRFFC--WAAEKQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMG--TKGLLTMETFT 242
Query: 171 TVMR-----------------------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC 207
M+ ++ ++ L+D+L + A +F K K+
Sbjct: 243 IAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKER 302
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ + + VL++GWC+ R A + +M G PD V++ +E R +
Sbjct: 303 FTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAI 362
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--F 325
M+ KG P+V + TI++ K + A++ ++ M D + Y+ LI F
Sbjct: 363 KLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGF 422
Query: 326 ILSKAVRFL-----------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
K + + YN +I + +A ++ K+ ++ +P
Sbjct: 423 GTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSI 482
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKER 427
T +K + + G V + EM+ KGI P ++++ +L L +G K R
Sbjct: 483 HTFNMIMKSYFMARNYEMGSAVWD---EMIKKGICPDDNSYTVLIRGL----IGEGKSR 534
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 16/182 (8%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
+G Y ++ G KK ++EL+KE+ E G+ D + +
Sbjct: 406 SGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQE--KGHPP-----------DGKTYNA 452
Query: 184 LMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ + + HA +++ K ++ I S F++++ + R + EM + G
Sbjct: 453 LIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGSAVWDEMIKKG 512
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ--IYE 300
PD SYT I E R+ L+EM +KG K +I K Q I+E
Sbjct: 513 ICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHKGGQPEIFE 572
Query: 301 AL 302
L
Sbjct: 573 EL 574
>gi|147782978|emb|CAN70810.1| hypothetical protein VITISV_034914 [Vitis vinifera]
Length = 708
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/355 (21%), Positives = 141/355 (39%), Gaps = 54/355 (15%)
Query: 88 ETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALG----KS 143
E D V EIL K + E + F WA Q Y H P YN M++ L K
Sbjct: 236 ELTTDLVIEILGKIH-----FEEKMAFRFFMWAGHQDCYSHEPRAYNEMIDILSSTKYKV 290
Query: 144 KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR------------ 191
K+F ++ +++ + V + + ++R+ + ++ L K+
Sbjct: 291 KQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYTEKHLAHLHKFAKKKKIRVKTQPEINA 350
Query: 192 -----------NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ V A +F + K+ + + +++L GWC+ R + ++EM +
Sbjct: 351 LNLLLDALCKCSLVEDAQAMFRRVKNKVKPDANTYNILFFGWCRVRNPSRGMRVLEEMIE 410
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG---CKPSVITCTIVMHALEKAKQ 297
G +PD +Y I+ +C+ + + M+ KG P+ T I++ AL ++ +
Sbjct: 411 MGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDR 470
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
E K+ + M + L D S Y +I C+ + A K +
Sbjct: 471 TEECFKLIKDMINSGVLPDVS----------------TYKQVIEGMCLAGKVEEAYKFLE 514
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
++ +PD T+ L + C K+ ++ L L M+ G VP T ML
Sbjct: 515 EMGNKGYRPDIVTYNCFLDVLCENKKSEE---ALGLYGRMIEAGCVPSVHTFNML 566
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 21/204 (10%)
Query: 128 HTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
HTP+ TYN +++ K+ +V E EL + + + M + ++++
Sbjct: 413 HTPDSFTYNTAIDSFCKAG-------MVTEATEL---FEFMRTKGSTMSSPTAKTYAIMI 462
Query: 186 DTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV-----LIHGWCKTRKSDYAQKAMKEMFQ 240
LV+ + +K+ KD I+ S + DV +I G C K + A K ++EM
Sbjct: 463 LALVQSDRTEECFKLI---KDMIN-SGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGN 518
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G+ PD V+Y CF++ C K + M E GC PSV T +++ + +
Sbjct: 519 KGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDG 578
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI 324
A + + +M C DT Y +I
Sbjct: 579 AFETWHEMDKRGCARDTDTYCVMI 602
>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 935
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 123/324 (37%), Gaps = 45/324 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI------------DELSNGYVSLAAMSTVMRRLDTR 179
+Y AM+ L K L +L++++ L GY S + R LD
Sbjct: 351 SYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGM 410
Query: 180 AMS----------VLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKS 228
+ S ++ L K + A L+ + + + F I G+ KT K
Sbjct: 411 SCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKM 470
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
A K EM HG P+ YT I + + + + + + G P V TC+
Sbjct: 471 TEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAF 530
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------------------- 329
+H L K ++ EALKV+ ++K + D YSSLI K
Sbjct: 531 IHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGI 590
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
A IYN ++ C + A KL + E +PD T++ + C + + +
Sbjct: 591 APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAE--- 647
Query: 390 VLNLMREMLSKGIVPQESTHKMLA 413
+L EM SKG+ P + L
Sbjct: 648 AFSLFHEMPSKGVQPHSFVYNALV 671
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 110/258 (42%), Gaps = 27/258 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D A S L+D ++ + ++ C I ++ ++VLIHG CK K + A + +
Sbjct: 243 DYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEIL 302
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
K M G P+ ++ IE YCRE + + L EM+++ PS ++ +++ L
Sbjct: 303 KGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHC 362
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------LSKAVRFL-------------IY 336
K + A K+ EKM + YS+LI + +A R L Y
Sbjct: 363 KDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCY 422
Query: 337 NTMIS--SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
N +IS S + EE + L +I+ KPD T + +M + +
Sbjct: 423 NAIISCLSKAGKMEEASTYLL--EIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFD-- 478
Query: 395 REMLSKGIVPQESTHKML 412
EML G++P + +L
Sbjct: 479 -EMLDHGLMPNNPLYTVL 495
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 136/320 (42%), Gaps = 50/320 (15%)
Query: 133 YNAMVEALGKS-------KKFGLMWELVKEIDELS-----NGYV---SLAAMSTVMRRLD 177
YNA+V+ L KS K F M E E D ++ +GY ++A ++ +
Sbjct: 597 YNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP 656
Query: 178 TRAM---SVLMDTLV----KRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDY 230
++ + S + + LV K + A +F + ++ F+ LI G+CK+ K
Sbjct: 657 SKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQE 716
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A + +EM PD V+YT I+ +C+ + + KEMQE+ +T T +M+
Sbjct: 717 ASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMY 776
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF-----------------ILSKAV-- 331
K Q E ++EKM + D Y +I+ ++ K +
Sbjct: 777 GYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLT 836
Query: 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD---CETHARSLKMCCHKKRMKDGM 388
+ I++ +I++ C R + A KL ++ E KP C T RS +M +
Sbjct: 837 KGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFH---EAGKMDEAT 893
Query: 389 LVLNLMREMLSKGIVPQEST 408
V ++ + G+VP +T
Sbjct: 894 RVFEGVKSL---GLVPDTTT 910
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 121/306 (39%), Gaps = 43/306 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F W+++Q G ++++ + L S+ FGL ++ ++ + Y S + + +V+
Sbjct: 91 FYWSQSQMGVPQFLDSFSILAVQLCNSELFGLANGVLTQM--IRTPYSSSSILDSVLFWF 148
Query: 177 DTRAMS------VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDY 230
S +L+D+ + + A VF K+ L S I C + +S
Sbjct: 149 RNYGGSSPVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLI-------RCNSLRS-- 199
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
M + G P+ +YT CR K + T +EMQ+ G KP C+ ++
Sbjct: 200 -------MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALID 252
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEG 350
+ I E L++ + M S C + + YN +I C +
Sbjct: 253 GFMREGDIDEVLRIKDVMVS--C--------------GIPINLITYNVLIHGLCKFGKME 296
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A ++ + + CKP+ T ++ C + M L L+ EM + +VP ++
Sbjct: 297 KAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGR---ALELLDEMEKRNLVPSAVSYG 353
Query: 411 MLAEEL 416
+ L
Sbjct: 354 AMINGL 359
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 88/213 (41%), Gaps = 22/213 (10%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I++ L+ G CK+ A+K M + G PD V+Y+ I+ YC+ ++ + EM
Sbjct: 596 IYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEM 655
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
KG +P ++H K + +A+ ++ +M T SF
Sbjct: 656 PSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSF-------------- 701
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
NT+I C + A +L Q++ PD T+ + C +M++ L L
Sbjct: 702 ---NTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANL---L 755
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
+EM + ++ T+ L K LG + E
Sbjct: 756 FKEMQERNLIVDTVTYTSLMYGYNK--LGQSSE 786
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 192 NSVAHAYKVFLKFKDCISLSSQ----IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
N + + +VF F+ ++ + + ++I+ CK A K E+ G G
Sbjct: 779 NKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKG 838
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+ I C+ +D + L EM E G KPS+ C+ ++ + +A ++ EA +V+E
Sbjct: 839 TIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEG 898
Query: 308 MKSDDCLTDTSFYSSLI 324
+KS + DT+ L+
Sbjct: 899 VKSLGLVPDTTTLIDLV 915
>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 121/264 (45%), Gaps = 25/264 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++L++ K S+ A +F + K + ++ F+ LI+G CK+R D + K M +
Sbjct: 227 NILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEE 286
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
+ PD +Y+ I C+E + EMQ++G +P+ IT T ++ ++++I
Sbjct: 287 NRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDS 346
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKA-----VRFLI--------------YNTMIS 341
A+ Y +M + D Y++L+ L K R L+ Y T+I
Sbjct: 347 AMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLID 406
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C + +A+++R+ + E+ D + C R++D L REM+ G
Sbjct: 407 GYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTL---REMVEAG 463
Query: 402 IVPQESTHKMLAEELEKKSLGNAK 425
+ P ++T+ M+ + KK GN K
Sbjct: 464 MKPDDATYTMVIDGYCKK--GNVK 485
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 30/227 (13%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
YN ++ L K +LV E M V + D + L+D K
Sbjct: 366 YNTLLNGLCKVGDVNKARKLVDE-------------MRMVGMKPDKITYTTLIDGYCKEG 412
Query: 193 SVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
+ A ++ ++ + L + F LI G+C+ + A++ ++EM + G PD +YT
Sbjct: 413 DLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYT 472
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
I+ YC++ + + LKEMQ G KP VIT ++M+ L K Q+ A + E M +
Sbjct: 473 MVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNL 532
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK 358
D + YN ++ C + + LKLR +
Sbjct: 533 GVTPDD----------------ITYNILLEGHCKNGKAEDLLKLRNE 563
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 126/306 (41%), Gaps = 37/306 (12%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
Q G T+ A+++ +S++ ID N Y + M + D +
Sbjct: 321 QRGLRPNGITFTALIDGQCRSRR----------IDSAMNTYHQMLTMGV---KPDLVMYN 367
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L++ L K V A K+ + + +I + LI G+CK + A + K M +
Sbjct: 368 TLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEE 427
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G D V++T I +CR+ R + TL+EM E G KP T T+V+ K +
Sbjct: 428 GVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMG 487
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
K+ ++M+ I + YN +++ C + + NA L + +
Sbjct: 488 FKLLKEMQ----------------INGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLN 531
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
PD T+ L+ C + +D +L L E KG++ + + L E KSL
Sbjct: 532 LGVTPDDITYNILLEGHCKNGKAED---LLKLRNE---KGLIVDYAYYTSLVSEYN-KSL 584
Query: 422 GNAKER 427
+ ++R
Sbjct: 585 KDRQKR 590
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/326 (19%), Positives = 124/326 (38%), Gaps = 37/326 (11%)
Query: 118 TWAKTQTGYMHTPETYNAMVEALGKSKKF----GLMWELVKEIDELSNGYVSLAAMSTVM 173
W + + HT ++Y AM L + F ++ LV + S V A + T
Sbjct: 89 NWLSSIPTFRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAG 148
Query: 174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG-------WCKTR 226
R LM V+ A + F ++ F + HG +
Sbjct: 149 TRCSNFVFDALMIAYWDSGFVSDAIQCFRLVRN------SNFQIPFHGCGYLLDKMINSN 202
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
E+ ++GF P Y I +C+E R E++++G +P+ ++
Sbjct: 203 SPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFN 262
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR 346
+++ L K++ + E ++ + M+ + D YS LI L K R +
Sbjct: 263 TLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDV----------- 311
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
A +L ++++ +P+ T + C +R+ M N +ML+ G+ P
Sbjct: 312 -----AEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAM---NTYHQMLTMGVKPDL 363
Query: 407 STHKMLAEELEK-KSLGNAKERIDEL 431
+ L L K + A++ +DE+
Sbjct: 364 VMYNTLLNGLCKVGDVNKARKLVDEM 389
>gi|297734081|emb|CBI15328.3| unnamed protein product [Vitis vinifera]
Length = 532
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/385 (23%), Positives = 161/385 (41%), Gaps = 56/385 (14%)
Query: 97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI 156
IL+ SPD L + W + ++H+ ET + V+ G+ K F + E++ +
Sbjct: 126 ILQTLNTSPDAGRTVLGFY--KWLSSNPKFVHSDETISFFVDYFGRRKDFKAIHEVLMDG 183
Query: 157 DELSNGYVSLAAMSTVMR--------------------RLDTRAMSVLMDTLVKRNSVAH 196
+ +A+ ++R R D ++++++ L + +H
Sbjct: 184 RNFAGAKTLESAIDRLVRAGRATQVVSFFDRMEVDYGFRRDRESLTMVVSKLCEHGFASH 243
Query: 197 AYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE- 255
A KV + I + I D+LI GWC K D A++ +EMF+ GF ++Y ++
Sbjct: 244 AEKVVKNVANEIFPNETICDLLIKGWCVDGKLDEARRLAEEMFRGGFEIGTMAYNSILDC 303
Query: 256 --HYCREKD-FR---KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
CR+KD FR + + L +M G +V T +++ L K ++ +A+K++ +M
Sbjct: 304 ICKLCRKKDPFRLESEAEKILVDMDVAGVPRNVETFNVLITNLCKIRKTEDAMKLFYRMG 363
Query: 310 SDDCLTDTSFYSSLIFILSKAVRFL---------------------IYNTMISSACVRSE 348
C + + + L L +A R Y I C
Sbjct: 364 EWGCYPNETTFLVLTRSLYQAARVGEGDEMIDRMKSAGFGNALDKKAYYEFIKILCGIER 423
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSL-KMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
+A+ L K++ED CKP +T+ + K+C H + K L E +++G VP ES
Sbjct: 424 IDHAMSLFSKMKEDGCKPGIKTYDLLMGKLCAHGRLDKANA----LFSEAVNRG-VPVES 478
Query: 408 THKMLAEELEKKSLGNAKERIDELL 432
L KK KE+ E L
Sbjct: 479 KAYKLDPRFVKKPTVAKKEKKRETL 503
>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 568
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 116/252 (46%), Gaps = 23/252 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L+ L + A KV + K D I+ + ++ LI G+C K A +++
Sbjct: 307 NTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKS 366
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G SP V+Y + +C++ D +KEM+E+G KPS IT TI++ + + +
Sbjct: 367 RGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEK 426
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI---------------FILSKAVRF----LIYNTMIS 341
A+++ M+ D YS LI F L A + +IYNTM+
Sbjct: 427 AIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVL 486
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C AL+L +++EE P+ ++ +++ C +++ K+ L+ +M+ G
Sbjct: 487 GYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAE---GLVEKMIDTG 543
Query: 402 IVPQESTHKMLA 413
I P +S +++
Sbjct: 544 IDPSDSILNLIS 555
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 112/256 (43%), Gaps = 22/256 (8%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ +V +S ++ F + K + L F ++I G C+ + + + + E+ + GF
Sbjct: 135 LLTFVVGSSSFNQWWRFFNESKIKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGF 194
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
SP+ V YT I+ C+ + K EM + G + T T+++H L K + +
Sbjct: 195 SPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFE 254
Query: 304 VYEKMKSDDCLTDTSFYSSLI------------FILSKAVR-------FLIYNTMISSAC 344
+YEKM+ D + Y+ ++ F L +R + YNT+I C
Sbjct: 255 MYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLC 314
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ A K+ +++ D P+ T+ + C ++ L+L R++ S+G+ P
Sbjct: 315 REMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGK---ALSLCRDLKSRGLSP 371
Query: 405 QESTHKMLAEELEKKS 420
T+ +L KK
Sbjct: 372 SLVTYNILVSGFCKKG 387
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D SVL+ + + A ++F L + + I++ ++ G+CK S A +
Sbjct: 442 DVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLF 501
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
+EM + P+ SY IE C+E+ ++ + +++M + G PS
Sbjct: 502 REMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPS 547
>gi|15241508|ref|NP_196986.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173968|sp|Q9LEQ7.1|PP382_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g14820, mitochondrial; Flags: Precursor
gi|9755750|emb|CAC01881.1| putative protein [Arabidopsis thaliana]
gi|332004697|gb|AED92080.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 598
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/367 (20%), Positives = 151/367 (41%), Gaps = 53/367 (14%)
Query: 69 SLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH 128
+L N ++ + L H+ V+ + R P A + FC WA + G+ H
Sbjct: 142 ALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKP-------AFRFFC--WAAERQGFAH 192
Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR-------------- 174
TYN+M+ L K+++F M +++E+ + G +++ + M+
Sbjct: 193 DSRTYNSMMSILAKTRQFETMVSVLEEMG--TKGLLTMETFTIAMKAFAAAKERKKAVGI 250
Query: 175 ---------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKT 225
++ ++ L+D+L + A +F K K+ + + + VL++GWC+
Sbjct: 251 FELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRV 310
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
R A + +M HG PD V++ +E R M+ KG P+V +
Sbjct: 311 RNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSY 370
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
TI++ K + A++ ++ M D + +Y +I+
Sbjct: 371 TIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAA----------------VYTCLITGFGT 414
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ + +L ++++E PD +T+ +K+ ++K + G + N +M+ I P
Sbjct: 415 QKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYN---KMIQNEIEPS 471
Query: 406 ESTHKML 412
T M+
Sbjct: 472 IHTFNMI 478
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 38/270 (14%)
Query: 131 ETYNAMVEALGKSK---KFGLMWELVKE--------IDELSNGYVSLAAMSTVMR----- 174
ET N ++++LG++K + ++++ +KE L NG+ + + R
Sbjct: 264 ETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDM 323
Query: 175 -----RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CISLSSQIFDVLIHGWCKTR 226
+ D A +V+++ L++ + A K+F K C ++ S + ++I +CK
Sbjct: 324 IDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRS--YTIMIRDFCKQS 381
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
+ A + +M G PD YTC I + +K V LKEMQEKG P T
Sbjct: 382 SMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYN 441
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDC--------LTDTSFYSSLIFILSKAVRFLIYNT 338
++ + K ++Y KM ++ + S++ + + + +AV ++
Sbjct: 442 ALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAV----WDE 497
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDC 368
MI + + +R I E + C
Sbjct: 498 MIKKGICPDDNSYTVLIRGLISEGKSREAC 527
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 16/182 (8%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
+G Y ++ G KK ++EL+KE+ E G+ D + +
Sbjct: 396 SGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQE--KGHPP-----------DGKTYNA 442
Query: 184 LMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ + + H +++ K ++ I S F++++ + R + + EM + G
Sbjct: 443 LIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKG 502
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ--IYE 300
PD SYT I E R+ L+EM +KG K +I + Q I+E
Sbjct: 503 ICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFE 562
Query: 301 AL 302
L
Sbjct: 563 EL 564
>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02060, chloroplastic-like [Cucumis sativus]
Length = 720
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 134/313 (42%), Gaps = 50/313 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAA--MSTVMR 174
F WA+ + GY HT ++Y +M+E LG+++ + I++ S G V L A +++MR
Sbjct: 99 FNWAQ-EMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMR 157
Query: 175 RLDTRAM-----------------------SVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211
+ + + L+ L+KR A KV+ + ++
Sbjct: 158 NFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVT 217
Query: 212 SQ--IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
F++LI G+C D + ++ + G PD V+Y ++ CR
Sbjct: 218 PDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNV 277
Query: 270 LKEMQEKGC--KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+K M +K P+V+T T ++ ++I +AL V+E+M + + Y++LI L
Sbjct: 278 VKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGL 337
Query: 328 SKAVRF--------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
+A +F +NT++ C +ALK+ +++ E +PD
Sbjct: 338 CEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPD 397
Query: 368 CETHARSLKMCCH 380
T++ ++ C
Sbjct: 398 SATYSALVRSLCQ 410
>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
Length = 722
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 140/334 (41%), Gaps = 55/334 (16%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEI--------DELSNGYVSLAAMSTVMRRL 176
G+ TY ++ L + K L+ ++ + L NGYVS RL
Sbjct: 317 GFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRG-------RL 369
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
D A +V+ ++++ SV +F ++ LI G CK A++ M
Sbjct: 370 D-EAKAVMHESML---SVGCGPDIF------------TYNTLILGLCKKGYLVSARELMN 413
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM G P+ ++YT I+ +C+E + L EM KG + + ++ AL K +
Sbjct: 414 EMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDE 473
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYN 337
++ +AL ++ M S C D ++SLIF L K +F + YN
Sbjct: 474 KVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYN 533
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
T+I + R ALKL + C D T+ +K C ++ G L L +M
Sbjct: 534 TLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKG---LALFEDM 590
Query: 398 LSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431
+SKG+ P + +L L + GN + ++ L
Sbjct: 591 MSKGLNPNNISCNILINGLCRT--GNIQHALEFL 622
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 81/206 (39%), Gaps = 19/206 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LIH + + A K + +M G D ++Y I+ CR + K ++M
Sbjct: 532 YNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMM 591
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
KG P+ I+C I+++ L + I AL+ M D +
Sbjct: 592 SKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPD----------------IV 635
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN++I+ C AL L K++ + PD T+ + C + D L L+
Sbjct: 636 TYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHL---LL 692
Query: 395 REMLSKGIVPQESTHKMLAEELEKKS 420
+ G +P E T +L K+
Sbjct: 693 SRGVDSGFIPNEVTWYILVSNFIKEG 718
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/347 (22%), Positives = 130/347 (37%), Gaps = 49/347 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA TQ GY H + Y +++ LG + +F K ID L + + V R
Sbjct: 98 FQWAGTQKGYCHMFDVYYMLIDKLGAAGEF-------KTIDAL---LMQMKQEGIVFRE- 146
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS------SQIFDVLIHGWCKTRKSDY 230
++M + A ++ L + S + + DVL+ G C
Sbjct: 147 --SLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNC----PKV 200
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
EM G SP ++ ++ C + LK+M GC P+ I ++H
Sbjct: 201 VPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIH 260
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------------- 333
AL K ++ E LK+ E+M C+ D + ++ I L K +R
Sbjct: 261 ALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTP 320
Query: 334 --LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
Y ++ C + A L K+ P+ + + R+ + V+
Sbjct: 321 NSFTYGVLMHGLCRMGKVDEARMLLNKVP----NPNVVLFNTLINGYVSRGRLDEAKAVM 376
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATE 437
+ MLS G P T+ L L KK L +A+E ++E+ E
Sbjct: 377 H--ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCE 421
>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
[Arabidopsis thaliana]
gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 122/278 (43%), Gaps = 31/278 (11%)
Query: 184 LMDTLVKRN---SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
LM L+K N V + YK ++ K I + F+V+I+ CKT K + A+ M++M
Sbjct: 194 LMIALLKENRSADVEYVYKEMIRRK--IQPNVFTFNVVINALCKTGKMNKARDVMEDMKV 251
Query: 241 HGFSPDGVSYTCFIEHYCR---EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
+G SP+ VSY I+ YC+ K D LKEM E P++ T I++ K
Sbjct: 252 YGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDN 311
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFIL------SKAV-------------RFLIYNT 338
+ ++KV+++M D + Y+SLI L S+A+ + YN
Sbjct: 312 LPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNA 371
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+I+ C AL + ++ P + + C ++ DG L EM
Sbjct: 372 LINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDG---FALKEEME 428
Query: 399 SKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
+GIVP T+ L L ++ AK+ D+L +
Sbjct: 429 REGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG 466
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 110/240 (45%), Gaps = 28/240 (11%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISL-SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L++ K + + A +F K ++ +++++++LI +CK K D +EM +
Sbjct: 370 NALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMER 429
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD +Y C I CR + ++ KG P ++T I+M + + +
Sbjct: 430 EGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRK 488
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN---ALKLRQ 357
A + ++M + R L YN ++ C +EGN A +R
Sbjct: 489 AAMLLKEMSK----------------MGLKPRHLTYNIVMKGYC---KEGNLKAATNMRT 529
Query: 358 KIE-EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++E E + + ++ L+ K +++D ++LN EML KG+VP T++++ EE+
Sbjct: 530 QMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLN---EMLEKGLVPNRITYEIVKEEM 586
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 110/246 (44%), Gaps = 21/246 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYNA++ K+ +++KE ++ A+ T TR ++L+D K
Sbjct: 368 TYNALINGFCKN-------DMLKEALDMFGSVKGQGAVPT------TRMYNMLIDAYCKL 414
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ + + + ++ I ++ LI G C+ + A+K ++ G PD V++
Sbjct: 415 GKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTF 473
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+E YCR+ + RK LKEM + G KP +T IVM K + A + +M+
Sbjct: 474 HILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEK 533
Query: 311 DDCL-TDTSFYSSLIFILSKAVRF----LIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
+ L + + Y+ L+ S+ + ++ N M+ V + + +++++ +
Sbjct: 534 ERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEI-VKEEMVDQGFV 592
Query: 366 PDCETH 371
PD E H
Sbjct: 593 PDIEGH 598
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 24/237 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCI----SLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
+ L+D K YK K+ + S + F++LI G+ K + K KE
Sbjct: 262 NTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKE 321
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M P+ +SY I C + +M G +P++IT +++ K
Sbjct: 322 MLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDM 381
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
+ EAL ++ +K + T +YN +I + C + + L++
Sbjct: 382 LKEALDMFGSVKGQGAVPTTR----------------MYNMLIDAYCKLGKIDDGFALKE 425
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
++E + PD T+ + C ++ L ++ SKG+ P T +L E
Sbjct: 426 EMEREGIVPDVGTYNCLIAGLCRNGNIEAAK---KLFDQLTSKGL-PDLVTFHILME 478
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/270 (19%), Positives = 113/270 (41%), Gaps = 29/270 (10%)
Query: 184 LMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+D V+ S + +F + D + ++S I D+L+ + + + +A K +
Sbjct: 123 FLDGFVRNGSDHQVHSIFHAISMCDNVCVNSIIADMLVLAYANNSRFELGFEAFKRSGYY 182
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G+ +S + +E V+Y KEM + +P+V T +V++AL K ++ +A
Sbjct: 183 GYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKA 242
Query: 302 LKVYEKMKSDDCLTDTSFYSSLI----------------FILSKAV------RFLIYNTM 339
V E MK C + Y++LI +L + V +N +
Sbjct: 243 RDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNIL 302
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I ++K+ +++ + KP+ ++ + C+ ++ + +++ +M+S
Sbjct: 303 IDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISE---AISMRDKMVS 359
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERID 429
G+ P T+ L K + KE +D
Sbjct: 360 AGVQPNLITYNALINGFCKNDM--LKEALD 387
>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 740
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 140/334 (41%), Gaps = 55/334 (16%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEI--------DELSNGYVSLAAMSTVMRRL 176
G+ TY ++ L + K L+ ++ + L NGYVS RL
Sbjct: 335 GFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRG-------RL 387
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
D A +V+ ++++ SV +F ++ LI G CK A++ M
Sbjct: 388 D-EAKAVMHESML---SVGCGPDIF------------TYNTLILGLCKKGYLVSARELMN 431
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM G P+ ++YT I+ +C+E + L EM KG + + ++ AL K +
Sbjct: 432 EMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDE 491
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYN 337
++ +AL ++ M S C D ++SLIF L K +F + YN
Sbjct: 492 KVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYN 551
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
T+I + R ALKL + C D T+ +K C ++ G L L +M
Sbjct: 552 TLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKG---LALFEDM 608
Query: 398 LSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431
+SKG+ P + +L L + GN + ++ L
Sbjct: 609 MSKGLNPNNISCNILINGLCRT--GNIQHALEFL 640
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 110/289 (38%), Gaps = 33/289 (11%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
YN ++ AL K +K + + MS+ + D + L+ L K N
Sbjct: 480 YNCLISALCKDEK-------------VQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVN 526
Query: 193 SVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
A ++ + + ++ ++ LIH + + A K + +M G D ++Y
Sbjct: 527 KFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYN 586
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
I+ CR + K ++M KG P+ I+C I+++ L + I AL+ M
Sbjct: 587 GLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHR 646
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
D + YN++I+ C AL L K++ + PD T+
Sbjct: 647 GLTPD----------------IVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITY 690
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ C + D L L+ + G +P E T +L K+
Sbjct: 691 NTLISWHCKEGMFDDAHL---LLSRGVDSGFIPNEVTWYILVSNFIKEG 736
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 76/347 (21%), Positives = 132/347 (38%), Gaps = 49/347 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA TQ GY H + Y +++ LG + +F L+ ++ + G V ++ ++ +
Sbjct: 116 FQWAGTQKGYCHMFDVYYMLIDKLGAAGEFKTTDALLMQMKQ--EGIVFRESLFILIMKH 173
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS------SQIFDVLIHGWCKTRKSDY 230
RA A ++ L + S + + DVL+ G C
Sbjct: 174 YGRA-----------GLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNC----PKV 218
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
EM G SP ++ ++ C + LK+M GC P+ I ++H
Sbjct: 219 VPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIH 278
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------------- 333
AL K ++ E LK+ E+M C+ D + ++ I L K +R
Sbjct: 279 ALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTP 338
Query: 334 --LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
Y ++ C + A L K+ P+ + + R+ + V+
Sbjct: 339 NSFTYGVLMHGLCRMGKVDEARMLLNKVP----NPNVVLFNTLINGYVSRGRLDEAKAVM 394
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATE 437
+ MLS G P T+ L L KK L +A+E ++E+ E
Sbjct: 395 H--ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCE 439
>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 116/252 (46%), Gaps = 25/252 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMF 239
++L+ L + A K+ K + LS I +++LI+G+C RK D A + ++
Sbjct: 302 NILIGGLCRGKKFGEAVKLVHKVNK-VGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLK 360
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G SP V+Y I Y + ++ +KEM+E+ PS +T TI++ A +
Sbjct: 361 SSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTE 420
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFIL---------SKAVRFL----------IYNTMI 340
+A +++ M+ + D YS L+ L SK + L IYNTMI
Sbjct: 421 KACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMI 480
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
C AL+L ++ + P+ + ++ + C ++ K+ L+L +M++
Sbjct: 481 HGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEAELLLG---QMINS 537
Query: 401 GIVPQESTHKML 412
G+ P S +KM+
Sbjct: 538 GLKPSVSLYKMV 549
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 114/268 (42%), Gaps = 23/268 (8%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ L++ N A+ +F + K + L + F ++I G C+ + + + + G
Sbjct: 130 LLCLLIRSNYFDKAWWIFNELKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGL 189
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
SP+ V YT I+ C++ + +M G P+ T +++M+ K E +
Sbjct: 190 SPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQ 249
Query: 304 VYEKMKSDDCLTDTSFYSSLI------FILSKAVR-------------FLIYNTMISSAC 344
+YE MK + + Y+ LI ++ KA + + YN +I C
Sbjct: 250 MYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLC 309
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ G A+KL K+ + P+ T+ + C ++M + + N ++ S G+ P
Sbjct: 310 RGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLK---SSGLSP 366
Query: 405 QESTHKMLAEELEK-KSLGNAKERIDEL 431
T+ L K ++L A + + E+
Sbjct: 367 TLVTYNTLIAGYSKVENLAGALDLVKEM 394
>gi|255557793|ref|XP_002519926.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540972|gb|EEF42530.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 481
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 131/317 (41%), Gaps = 47/317 (14%)
Query: 92 DKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWE 151
D + E+L+ Y +P VE F WA ++G HTP ++N MV+ LGK++ F MW+
Sbjct: 68 DIIHEVLKLSYSNPASAVE-----FFRWAG-RSG-THTPYSWNLMVDLLGKNQLFEAMWD 120
Query: 152 LVKEIDE---------------------LSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
++ + + S +S M + D A++ L+ +
Sbjct: 121 AIRSMKQENVLSMATFASVFGSYCKAGSFSEAIMSFDIMDKYGIQQDVIAVNSLLSAICN 180
Query: 191 R-NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH-GFSPDGV 248
N A + F + K I + +L+ GW K + A+ EM H G+SP+ +
Sbjct: 181 EDNQTIKAVEFFDRIKLKIPPDGDTYAILLEGWEKEGNAAKAKNIFGEMVIHVGWSPENM 240
Query: 249 -SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+Y F+ RE L+ M+EKGC P + + + L K + A+ ++
Sbjct: 241 PAYNAFLNLLVRESQTDDAFDFLRLMKEKGCLPGLKFYSDALDMLLKRNDVLHAVPMW-- 298
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
D + DT +L L+YN+MI C ++ NA +L + PD
Sbjct: 299 ----DIMVDTGLMPNL----------LMYNSMIGLLCNNNDIDNAFRLFDDMVFHGAFPD 344
Query: 368 CETHARSLKMCCHKKRM 384
T+ + K++
Sbjct: 345 FLTYKMIFRCLVKNKKV 361
>gi|240256396|ref|NP_199195.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635652|sp|P0C8R0.1|PP416_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g43820
gi|332007631|gb|AED95014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 546
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/422 (21%), Positives = 172/422 (40%), Gaps = 84/422 (19%)
Query: 71 KLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTP 130
KL +S I S +D V+++L + S EA+ F F WA + G
Sbjct: 97 KLKGKSAIQKSLSSLGIGLSIDIVADVLNRGNLSG----EAMVTF-FDWAVREPGVTKDV 151
Query: 131 ETYNAMVEALGKSKKFGLMWELVK---------EIDELSNGYVSLAAMSTVMRRLD---- 177
+Y+ ++ ALG+ K F M +++K +++ L+ S + V R ++
Sbjct: 152 GSYSVILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEE 211
Query: 178 ---------TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS 228
T + + L+ L +R+ V+ A VF K I S ++++I GW K +
Sbjct: 212 SESFGVKCSTESFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEV 271
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIE--------------------------------- 255
+ +K +KEM + GF PD +SY+ IE
Sbjct: 272 EEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAM 331
Query: 256 --HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
++ +DF + + M ++ C+P++ T + ++ L K +++ +AL+++E+M S
Sbjct: 332 ICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGV 391
Query: 314 LTDTSFYSSLIFILSKA----VRFLIYNTMISSACVRSEEGNALKLRQ------------ 357
L T +S + L +IY + C SE L L++
Sbjct: 392 LPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLN 451
Query: 358 ---KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+++E D E + + C +++ +LV M E + KG P + L+
Sbjct: 452 VWDEMQESGYPSDVEVYEYIVDGLCIIGHLENAVLV---MEEAMRKGFCPNRFVYSRLSS 508
Query: 415 EL 416
+L
Sbjct: 509 KL 510
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 144/334 (43%), Gaps = 41/334 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDEL-SNGYVSLAAMSTVMRRLDTRAMSV 183
GY TYN ++ L + G + E + D + S GY D A +
Sbjct: 110 GYEPDNITYNTILSGLCR---MGKVSEAKQFFDSMPSRGYSP-----------DVVAYNG 155
Query: 184 LMDTLVKRNSVAHAYKVF--LKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L+D L K VA A+ +F + D ++ ++ LI G+C+ K+D A K K++
Sbjct: 156 LLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIA 215
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G+ PD V+Y + R+ + + + K+M + GC P+ T +IV+ + +
Sbjct: 216 KGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMAR 275
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMIS 341
L++YE+M D +++I +L KA + + YN ++
Sbjct: 276 CLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLD 335
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C + A +L + ++ C PD +++ L C ++ D ++ + M+ +
Sbjct: 336 GLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFD---RMIERK 392
Query: 402 IVPQESTHKMLAEELEKKS-LGNAKERIDELLTH 434
+VP T +L + L K L AK+ +D + H
Sbjct: 393 LVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEH 426
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 120/293 (40%), Gaps = 33/293 (11%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+ G+ TY+ ++ L K+ K E+V+E+ E D
Sbjct: 2 AEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKG-------------VNPDVATY 48
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
++++D L + V A ++F K + C S ++ ++ LI+G CK + A K ++EM
Sbjct: 49 TIIVDRLCRAGKVDEADELFHKMIERGC-SANTVAYNALINGLCKDENIERAYKLLEEMA 107
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G+ PD ++Y + CR + M +G P V+ ++ AL K ++
Sbjct: 108 SKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVA 167
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
EA +++ M + D LI YNT+I C + A+KL + +
Sbjct: 168 EAWGLFKTMD----MADRKVAPDLI----------TYNTLIDGFCRVEKTDEAMKLFKDV 213
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
PD T+ L K M + + ++M+ G P +T+ ++
Sbjct: 214 IAKGYMPDTVTYNSILLGLARKSNMDEAE---EMFKKMVDSGCAPNGATYSIV 263
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 82/380 (21%), Positives = 149/380 (39%), Gaps = 54/380 (14%)
Query: 106 DKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------- 158
+K EA+K F AK GYM TYN+++ L + E+ K++ +
Sbjct: 201 EKTDEAMKLFKDVIAK---GYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNG 257
Query: 159 -----LSNGYVSLAAMSTVM--------RRL--DTRAMSVLMDTLVKRNSVAHAYKVFLK 203
+ +G+ + M+ + +R D + ++D L K V A+KV +
Sbjct: 258 ATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEE 317
Query: 204 FKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
++ + +++L+ G CKT D A + M +G +PD VSY+ + C+
Sbjct: 318 MSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNK 377
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
M E+ P V+T I+M L KA ++ EA + + M + L D ++
Sbjct: 378 VHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTT 437
Query: 323 LIFILSK------AVRFLIY-------------NTMISSACVRSEEGNALKLRQKI--EE 361
L+ L + AVR Y N +++ C + AL + + +
Sbjct: 438 LMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSD 497
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
PD T+ + R+ ++ ++M G P + L L K+
Sbjct: 498 GEFSPDVVTYTTLVNALIEAGRVDQA---VDYFQQMTGSGCAPDYVAYNTLMNGLRKQGR 554
Query: 422 GNAKERIDELLTHATEQRTF 441
+R LT A +++ F
Sbjct: 555 HIQADR----LTQAMKEKGF 570
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 24/227 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +I G CKT K A + ++EM + G +PD +YT ++ CR + D +M
Sbjct: 13 YSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMI 72
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------S 328
E+GC + + +++ L K + I A K+ E+M S D Y++++ L S
Sbjct: 73 ERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVS 132
Query: 329 KAVRF-------------LIYNTMISSACVRSEEGNALKLRQKIE--EDSCKPDCETHAR 373
+A +F + YN ++ + + A L + ++ + PD T+
Sbjct: 133 EAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNT 192
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ C ++ + M L +++++KG +P T+ + L +KS
Sbjct: 193 LIDGFCRVEKTDEAM---KLFKDVIAKGYMPDTVTYNSILLGLARKS 236
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 117/269 (43%), Gaps = 35/269 (13%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
++ G + TYN +++ L K+ EL + + NG D +
Sbjct: 319 SKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTM--VDNGCAP-----------DIVSY 365
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQ 240
SV+++ L K N V A +F + + + + F++L+ G CK K D A+ + M +
Sbjct: 366 SVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSE 425
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
H PDGV+ T + CR+K + + M EKG V+ IV+ L + ++ +
Sbjct: 426 HNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQ 485
Query: 301 ALKVYEKM-KSDDCLT-DTSFYSSLIFILSKAVR-------------------FLIYNTM 339
AL ++ M KSD + D Y++L+ L +A R ++ YNT+
Sbjct: 486 ALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTL 545
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDC 368
++ + A +L Q ++E DC
Sbjct: 546 MNGLRKQGRHIQADRLTQAMKEKGFLSDC 574
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 19/183 (10%)
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M + GF PD V+Y+ I C+ + ++EM EKG P V T TI++ L +A +
Sbjct: 1 MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
+ EA +++ KM C +T + YN +I+ C A KL +
Sbjct: 61 VDEADELFHKMIERGCSANT----------------VAYNALINGLCKDENIERAYKLLE 104
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
++ +PD T+ L C ++ + M S+G P + L + L
Sbjct: 105 EMASKGYEPDNITYNTILSGLCRMGKVSEAK---QFFDSMPSRGYSPDVVAYNGLLDALY 161
Query: 418 KKS 420
K+
Sbjct: 162 KEG 164
>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 121/264 (45%), Gaps = 25/264 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++L++ K S+ A +F + K + ++ F+ LI+G CK+R D + K M +
Sbjct: 227 NILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEE 286
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
+ PD +Y+ I C+E + EMQ++G +P+ IT T ++ +++++
Sbjct: 287 NRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDS 346
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKA-----VRFLI--------------YNTMIS 341
A+ Y +M + D Y++L+ L K R L+ Y T+I
Sbjct: 347 AMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLID 406
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C + +A+++R+ + E+ D + C R++D L REM+ G
Sbjct: 407 GYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTL---REMVEAG 463
Query: 402 IVPQESTHKMLAEELEKKSLGNAK 425
+ P ++T+ M+ + KK GN K
Sbjct: 464 MKPDDATYTMVIDGYCKK--GNVK 485
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 30/227 (13%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
YN ++ L K +LV E M V + D + L+D K
Sbjct: 366 YNTLLNGLCKVGDVNKARKLVDE-------------MKMVGMKPDKITYTTLIDGYCKEG 412
Query: 193 SVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
+ A ++ ++ + L + F LI G+C+ + A++ ++EM + G PD +YT
Sbjct: 413 DLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYT 472
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
I+ YC++ + + LKEMQ G KP VIT ++M+ L K Q+ A + E M +
Sbjct: 473 MVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNL 532
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK 358
D + YN ++ C + + LKLR +
Sbjct: 533 GVTPDD----------------ITYNILLEGHCKNGKAEDLLKLRNE 563
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 126/306 (41%), Gaps = 37/306 (12%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
Q G T+ A+++ +S++ +D N Y + M + D +
Sbjct: 321 QRGLRPNGITFTALIDGQYRSRR----------MDSAMNTYHQMLTMGV---KPDLVMYN 367
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L++ L K V A K+ + K +I + LI G+CK + A + K M +
Sbjct: 368 TLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEE 427
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G D V++T I +CR+ R + TL+EM E G KP T T+V+ K +
Sbjct: 428 GVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMG 487
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
K+ ++M+ I + YN +++ C + + NA L + +
Sbjct: 488 FKLLKEMQ----------------INGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLN 531
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
PD T+ L+ C + +D +L L E KG++ + + L E KSL
Sbjct: 532 LGVTPDDITYNILLEGHCKNGKAED---LLKLRNE---KGLIVDYAYYTSLVSEYN-KSL 584
Query: 422 GNAKER 427
+ ++R
Sbjct: 585 KDRQKR 590
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/326 (19%), Positives = 123/326 (37%), Gaps = 37/326 (11%)
Query: 118 TWAKTQTGYMHTPETYNAMVEALGKSKKF----GLMWELVKEIDELSNGYVSLAAMSTVM 173
W + + HT ++Y AM L + F ++ LV + S V A + T
Sbjct: 89 NWLSSIPTFRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAG 148
Query: 174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG-------WCKTR 226
R LM V+ A + F ++ F + HG +
Sbjct: 149 TRCSNFVFDALMIAYWDSGFVSDAIQCFRLVRN------SNFQIPFHGCGYLLDKMINSN 202
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
E+ ++GF P Y I +C+E R E++++G +P+ ++
Sbjct: 203 SPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFN 262
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR 346
+++ L K++ + E ++ + M+ + D YS LI L K R +
Sbjct: 263 TLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDV----------- 311
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
A +L ++++ +P+ T + +RM M N +ML+ G+ P
Sbjct: 312 -----AEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAM---NTYHQMLTMGVKPDL 363
Query: 407 STHKMLAEELEK-KSLGNAKERIDEL 431
+ L L K + A++ +DE+
Sbjct: 364 VMYNTLLNGLCKVGDVNKARKLVDEM 389
>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
Length = 616
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 131/320 (40%), Gaps = 44/320 (13%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEI------------DELSNGYVSLA---AM 169
G T T+N ++ L K KFG EL ++ + NG + A
Sbjct: 187 GLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAA 246
Query: 170 STVMRRL-------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF--DVLIH 220
+ + R++ D S ++D+L K V A +F + +S IF + LI
Sbjct: 247 AGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIF-SYMKAKGISPNIFTYNSLIQ 305
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G C + A + EM P+ V+++ I +C+E + + LK M E G +P
Sbjct: 306 GLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEP 365
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340
+V+T + +M+ ++ EA K+++ M + C D YN +I
Sbjct: 366 NVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDV----------------FSYNILI 409
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+ C G A +L ++ PD ++ + C R+++ +L + ML+
Sbjct: 410 NGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAH---DLFKNMLTN 466
Query: 401 GIVPQESTHKMLAEELEKKS 420
G +P T+ +L + K+
Sbjct: 467 GNLPDLCTYSILLDGFCKQG 486
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 126/280 (45%), Gaps = 30/280 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
DT + +L++ + V + V K K + L+ F+ LI+G CK K A +
Sbjct: 156 DTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELF 215
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+M G+ PD +YT I C+ + ++M E GC+P V+T + ++ +L K
Sbjct: 216 DDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKD 275
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIY 336
+++ EAL ++ MK+ + Y+SLI L R + +
Sbjct: 276 RRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTF 335
Query: 337 NTMISSACVRSEEGNALKLR---QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ +I+ C +EGN + R + + E +P+ T++ + + + + + ++
Sbjct: 336 SLLINIFC---KEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDV 392
Query: 394 MREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDELL 432
M++KG P ++ +L K K +G AK+ +E++
Sbjct: 393 ---MITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMI 429
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/357 (21%), Positives = 138/357 (38%), Gaps = 74/357 (20%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL 166
+V EAL F + AK G TYN++++ L + W +E + N +SL
Sbjct: 277 RVNEALDIFSYMKAK---GISPNIFTYNSLIQGLCNFSR----W---REASAMLNEMMSL 326
Query: 167 AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKV---------------FLKFKDCISLS 211
M ++ S+L++ K +V A V + + SL
Sbjct: 327 NIMPNIV------TFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQ 380
Query: 212 SQI---------------------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+++ +++LI+G+CK ++ A++ EM G +PD VSY
Sbjct: 381 AEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSY 440
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I+ C+ R+ K M G P + T +I++ K + +A +++ M+S
Sbjct: 441 NTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQS 500
Query: 311 DDCLTDTSFYSSLI-------------------FILSKAVRFLIYNTMISSACVRSEEGN 351
+ Y+ LI F+ IY T+I+ C
Sbjct: 501 TYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDE 560
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
AL+ + +EED C P+ ++ ++ KD + L+ EM KG V +T
Sbjct: 561 ALEAFRNMEEDGCPPNEFSYNVIIRGFLQH---KDESRAVQLIGEMREKGFVADVAT 614
>gi|414869157|tpg|DAA47714.1| TPA: hypothetical protein ZEAMMB73_516901 [Zea mays]
Length = 853
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 132/323 (40%), Gaps = 51/323 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI-------------------- 156
F W K Q G+ H TY M+ LG++++FG++ EL+ E+
Sbjct: 347 FQWLKRQPGFKHDGHTYTTMIGILGQARQFGVLKELLDEMSRAHCKPTVVTYNRIIHAYG 406
Query: 157 --DELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
+ L M D L+D K + A ++ + ++ + LS
Sbjct: 407 RANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQE-VGLSPDT 465
Query: 215 F--DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
F V+++ K + A K EM ++G +P+ V+Y I + +++ V K+
Sbjct: 466 FTYSVMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKD 525
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
MQ G +P IT +IVM L + EA V+ +M+ D D Y L+ + KA
Sbjct: 526 MQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRR-DWAPDEPVYGLLVDLWGKA-- 582
Query: 333 FLIYNTMISSACVRSEEGN---ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
GN AL Q + +D +P+ T L R +D +
Sbjct: 583 -----------------GNVDKALGWYQAMLQDGLQPNVPTCNSLLSAFLKMNRFQDAYI 625
Query: 390 VLNLMREMLSKGIVPQESTHKML 412
VL + ML++G+VP T+ +L
Sbjct: 626 VL---QNMLARGLVPSVQTYTLL 645
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 22/196 (11%)
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
Q GF DG +YT I + + F + L EM CKP+V+T ++HA +A +
Sbjct: 353 QPGFKHDGHTYTTMIGILGQARQFGVLKELLDEMSRAHCKPTVVTYNRIIHAYGRANYLK 412
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI-------------------YNTMI 340
EA+KV+E+M+ D Y +LI I +KA I Y+ M+
Sbjct: 413 EAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSVMV 472
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+ + A KL ++ E+ C P+ T+ + + + ++ V+ L ++M
Sbjct: 473 NCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYEN---VVKLYKDMQVA 529
Query: 401 GIVPQESTHKMLAEEL 416
G P + T+ ++ E L
Sbjct: 530 GFRPDKITYSIVMEVL 545
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 29/249 (11%)
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
L+ ++VA + +LK + + +I + R+ ++ + EM + P
Sbjct: 336 LLHDHTVALGFFQWLKRQPGFKHDGHTYTTMIGILGQARQFGVLKELLDEMSRAHCKPTV 395
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT-CTIV-MHALEKAKQIYEALKVY 305
V+Y I Y R ++ +EMQE G +P +T CT++ +HA KA + A+ +Y
Sbjct: 396 VTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHA--KAGYLDIAMDLY 453
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMIS-SACV 345
+M+ DT YS ++ L K + + YN MI+ A
Sbjct: 454 GRMQEVGLSPDTFTYSVMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKA 513
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
R+ E N +KL + ++ +PD T++ +++ H + + V MR + P
Sbjct: 514 RNYE-NVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMR----RDWAPD 568
Query: 406 ESTHKMLAE 414
E + +L +
Sbjct: 569 EPVYGLLVD 577
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 22/180 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELS--------NGYVSLAA--------------M 169
TY+ MV LGK + ++L E+ E N ++L A M
Sbjct: 467 TYSVMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDM 526
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSD 229
R D S++M+ L + A VF++ + + ++ +L+ W K D
Sbjct: 527 QVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRRDWAPDEPVYGLLVDLWGKAGNVD 586
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
A + M Q G P+ + + + + F+ L+ M +G PSV T T+++
Sbjct: 587 KALGWYQAMLQDGLQPNVPTCNSLLSAFLKMNRFQDAYIVLQNMLARGLVPSVQTYTLLL 646
>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 556
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 22/221 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G C ++D A + +M + G PD V+YT +E C+ +++ L EM+
Sbjct: 155 YNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMR 214
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
+KGC P ++T +V++ + + ++ +A++ + + S C +T Y+ ++ L A R+
Sbjct: 215 DKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWE 274
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ +N +IS C R A+++ +I + C P+ ++ L
Sbjct: 275 DAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPIL 334
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C +K+M M + L M+S G P ++ L L
Sbjct: 335 HAFCKQKKMDRAMAFVEL---MVSSGCYPDIVSYNTLLTAL 372
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 144/327 (44%), Gaps = 36/327 (11%)
Query: 119 WAKTQTGYMHTPET--YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
+ K+ Y P T YN +++ L +++ WE +++ +A MS R
Sbjct: 244 FLKSLPSYGCEPNTVSYNIVLKGLCTAER----WEDAEKL---------MAEMSRKGRPP 290
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ ++L+ L +R V A ++ + K + +S ++ ++H +CK +K D A +
Sbjct: 291 NVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFV 350
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ M G PD VSY + CR + L ++++KGC P +I+ V+ L KA
Sbjct: 351 ELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKA 410
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ EAL++ +M + D + Y+T+ S C A+K
Sbjct: 411 GKTEEALELLNEMVTKGLQPD----------------IITYSTISSGLCREGRIEEAIKA 454
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
K+++ +P+ + L C ++ ++L M+S G +P EST+ +L E
Sbjct: 455 FCKVQDMGIRPNTVLYNAILLGLCKRRATHS---AIDLFTYMVSNGCMPNESTYTILIEG 511
Query: 416 LEKKSL-GNAKERIDELLTHATEQRTF 441
L + L A+E + EL + +T
Sbjct: 512 LAYEGLVKEAREMMAELCSRGVVSKTL 538
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
YN M++ CV + NA R+ + +PD T+ ++ C + R + + VL+
Sbjct: 123 YNAMVAGYCVTGQLDNA---RRLVAAMPMEPDTYTYNTLIRGLCGRGRTDNALAVLD--- 176
Query: 396 EMLSKGIVPQESTHKMLAEELEKKS 420
+ML +G VP T+ +L E K+S
Sbjct: 177 DMLRRGCVPDVVTYTILLEATCKRS 201
>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 115/245 (46%), Gaps = 33/245 (13%)
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAM 235
+V NS+ + + + + K+ + L +++ F++LI G CK + A +
Sbjct: 228 NVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVL 287
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M + G P+ V+YT ++ Y K+ K + + +G P+V + +++++ L K
Sbjct: 288 SVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKN 347
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIY 336
K + EA+K++++M + +T YSSLI L K+ R + Y
Sbjct: 348 KMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITY 407
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N++++ C + A+ L K++++ +PD T+ + C R+KD + ++
Sbjct: 408 NSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQ---RIYQD 464
Query: 397 MLSKG 401
+L KG
Sbjct: 465 LLCKG 469
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 109/250 (43%), Gaps = 36/250 (14%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP +Y+ M+ L K+K +L KE+ L M+ +T S L+D
Sbjct: 331 TPNVHSYSVMINGLCKNKMVDEAVKLFKEM--------HLKNMTP-----NTVTYSSLID 377
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L K ++ + + + + ++ I ++ L++G CK + D A + +M G P
Sbjct: 378 GLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQP 437
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D +YT ++ C+ + +++ KG ++ T++++ L K EAL +
Sbjct: 438 DMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLL 497
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK-LRQKIEEDSC 364
+M+ + C+ D + Y T+IS+ ++ G A+K LR+ I +S
Sbjct: 498 SQMEDNGCMPDA----------------VTYETLISALFKNNKNGKAVKLLREMIARES- 540
Query: 365 KPDCETHARS 374
DC +S
Sbjct: 541 --DCSGKEQS 548
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 82/200 (41%), Gaps = 20/200 (10%)
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+ L+ G C K A + + F D VSY I C+ + R L++++
Sbjct: 127 NTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKIEG 186
Query: 276 -KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+P VI T ++ + K K + +A +Y +M Y +++
Sbjct: 187 LLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEM------IVKKIYPNVV---------- 230
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+N++I C+ + A+ L ++ ++ P+ T + C + +K VL++
Sbjct: 231 TFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSV- 289
Query: 395 REMLSKGIVPQESTHKMLAE 414
M+ +G+ P T+ L +
Sbjct: 290 --MIKQGVEPNVVTYTSLMD 307
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 143/341 (41%), Gaps = 40/341 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKE-----------------IDEL-SNGYVSLA-AMSTV 172
T+N++++ L KS + G +++ + ID L G A A+
Sbjct: 467 TFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDA 526
Query: 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYA 231
M DT A + ++ L K V+ A +V+ + + + ++ F++LI G CK + A
Sbjct: 527 MPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQA 586
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
+EM PD +++ I+ C+ L M G P+V+T ++H
Sbjct: 587 SALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHG 646
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR------------------- 332
L K+ +I EA + E+M S C+ D+ Y SL++ L +A R
Sbjct: 647 LCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPD 706
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
+ YN ++ + A+ + +++ PD T+ + C +++ +
Sbjct: 707 TVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHG 766
Query: 393 LMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELL 432
M +S+ VP T+ +L L K + A+E I E++
Sbjct: 767 DMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMM 807
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 113/243 (46%), Gaps = 25/243 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLK--FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
++++ +L + A A ++F +D ++ + ++ +I+G CK+ + + +E+
Sbjct: 184 NIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELV 243
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ G PD V+Y I+ C+ D + +M + C P+V+T +++++ L K +I
Sbjct: 244 ERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRID 303
Query: 300 EALKVYEKM--KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
EA ++ ++M KS D L + + YN+ + C +S A +L +
Sbjct: 304 EARELIQEMTRKSCDVLPN----------------IITYNSFLDGLCKQSMTAEACELMR 347
Query: 358 KIEEDSCK--PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ + S + PD T + + C ++ + V + +M++ G VP T+ L
Sbjct: 348 SLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFD---DMIAGGYVPNVITYNALVNG 404
Query: 416 LEK 418
L K
Sbjct: 405 LCK 407
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 126/306 (41%), Gaps = 45/306 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY+ ++ L K + EL++E+ S V+ + T + +D L K+
Sbjct: 288 TYSVLINGLCKVGRIDEARELIQEMTRKS---------CDVLPNIIT--YNSFLDGLCKQ 336
Query: 192 NSVAHAYKVFLKFKDC---ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
+ A A ++ +D +S + F LI G CK + D A +M G+ P+ +
Sbjct: 337 SMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVI 396
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+Y + C+ + ++ M +KG P VIT ++++ A KA ++ EAL++ M
Sbjct: 397 TYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGM 456
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRF--------------------LIYNTMISSACVRSE 348
S C + ++S+I L K+ R + Y T+I
Sbjct: 457 ASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGR 516
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHK--KRMKDGMLVLNLMREMLSKGIVPQE 406
G A L + PD +T+A + CC ++ D L + ML +VP +
Sbjct: 517 AGQAEALLDAM------PDPDTYAFN---CCINGLSKLGDVSRALQVYNRMLELELVPDK 567
Query: 407 STHKML 412
T +L
Sbjct: 568 VTFNIL 573
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 94/202 (46%), Gaps = 14/202 (6%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY+ ++ L K + EL++E+ S V+ + T + +D L K+
Sbjct: 782 TYSVLINGLCKVGRIDEARELIQEMMRKS---------CDVLPNIIT--YNSFLDGLCKQ 830
Query: 192 NSVAHAYKVFLKFKDC---ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
+ +A A ++ +D +S + F LI G CK ++D A +M G+ P+ V
Sbjct: 831 SMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVV 890
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+Y + C+ + ++ M +KG P VIT ++++ A KA + EAL++ M
Sbjct: 891 TYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGM 950
Query: 309 KSDDCLTDTSFYSSLIFILSKA 330
S C + ++S+I L K+
Sbjct: 951 ASRGCTPNVVTFNSIIDGLCKS 972
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 86/178 (48%), Gaps = 12/178 (6%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN+ ++ L K +M E + + L +G + ++ DT S L+D L K
Sbjct: 819 TYNSFLDGLCKQS---MMAEACELMRSLRDGSLRVSP--------DTVTFSTLIDGLCKC 867
Query: 192 NSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
A VF + + + ++VL++G CKT K + A ++ M G +PD ++Y
Sbjct: 868 GQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITY 927
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+ ++ +C+ + L M +GC P+V+T ++ L K+ Q EA ++++ M
Sbjct: 928 SVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDM 985
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/339 (21%), Positives = 130/339 (38%), Gaps = 49/339 (14%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
GY+ TYNA+V L K+ D++ + + +M D SVL
Sbjct: 390 GYVPNVITYNALVNGLCKA-------------DKMERAHAMIESMVDKGVTPDVITYSVL 436
Query: 185 MDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM-FQH 241
+D K + V A ++ + + C + F+ +I G CK+ +S A + +M +H
Sbjct: 437 VDAFCKASRVDEALELLHGMASRGCTP-NVVTFNSIIDGLCKSDRSGEAFQMFDDMALKH 495
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD ++Y I+ R + + L M + P ++ L K + A
Sbjct: 496 GLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPD----PDTYAFNCCINGLSKLGDVSRA 551
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISS 342
L+VY +M + + D ++ LI KA F + + +I
Sbjct: 552 LQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDG 611
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C + A + + P+ T+ + C R+++ + EM+S G
Sbjct: 612 LCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEE---ACQFLEEMVSSGC 668
Query: 403 VPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQRTF 441
VP T+ L L + S R D+ L +E ++F
Sbjct: 669 VPDSITYGSLVYALCRAS------RTDDALQLVSELKSF 701
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 134/305 (43%), Gaps = 43/305 (14%)
Query: 125 GYMHTPE---TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
G + P TYNA+V L KS + + ++E+ +S+G V D+
Sbjct: 629 GNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEM--VSSGCVP-----------DSITY 675
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L+ L + + A ++ + K + +++L+ G K+ +++ A ++EM
Sbjct: 676 GSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVG 735
Query: 241 HGFSPDGVSYTCFIEHYCREKDF---RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
G PD V+Y I+ C+ D R++ + + C P+V+T +++++ L K +
Sbjct: 736 KGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGR 795
Query: 298 IYEALKVYEKM--KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
I EA ++ ++M KS D L + + YN+ + C +S A +L
Sbjct: 796 IDEARELIQEMMRKSCDVLPN----------------IITYNSFLDGLCKQSMMAEACEL 839
Query: 356 RQKIEEDSCK--PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
+ + + S + PD T + + C + + N+ +M++ G VP T+ +L
Sbjct: 840 MRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDE---ACNVFDDMIAGGYVPNVVTYNVLM 896
Query: 414 EELEK 418
L K
Sbjct: 897 NGLCK 901
>gi|388516039|gb|AFK46081.1| unknown [Lotus japonicus]
Length = 327
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 28/221 (12%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
IF+ ++ G C+ D A + ++ + G++PD +SY+ + ++ + + + +M
Sbjct: 62 IFNAVVGGMCREGLVDRAFEFIRYISAKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDM 121
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK---- 329
KGC+P+V+T +I++ +L + ++ EA+ + + MK D Y LI K
Sbjct: 122 LSKGCEPNVVTYSILISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRV 181
Query: 330 --AVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA-- 372
A+ FL YNT++S+ C + ALK+ +K+ E C P+ ++
Sbjct: 182 DLAIEFLESMISDGCLPDIVNYNTILSTLCKNGKADEALKIFEKLGEVGCPPNVSSYNTL 241
Query: 373 -RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+L HK R L ++ EMLSK I P E T+ L
Sbjct: 242 FSALWSSGHKIR------ALGMILEMLSKDIDPDEITYNSL 276
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 19/193 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +LI C+ K + A +K M + G +PD SY I +C+E L+ M
Sbjct: 133 YSILISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMI 192
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL----------- 323
GC P ++ ++ L K + EALK++EK+ C + S Y++L
Sbjct: 193 SDGCLPDIVNYNTILSTLCKNGKADEALKIFEKLGEVGCPPNVSSYNTLFSALWSSGHKI 252
Query: 324 ------IFILSKAVRF--LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ +LSK + + YN++IS C + A++L +E +P ++ L
Sbjct: 253 RALGMILEMLSKDIDPDEITYNSLISCLCRDAMVDQAIELLVDMESSVYQPSVISYNIVL 312
Query: 376 KMCCHKKRMKDGM 388
R+ D +
Sbjct: 313 LGLSKVHRISDAI 325
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 24/182 (13%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP+ +Y+ ++ A K + L E ++ + +S+G + D + ++
Sbjct: 162 TPDAYSYDPLIAAFCKESRVDLAIEFLESM--ISDGCLP-----------DIVNYNTILS 208
Query: 187 TLVKRNSVAHAYKVFLKFKDC-----ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
TL K A K+F K + +S + +F L K R A + EM
Sbjct: 209 TLCKNGKADEALKIFEKLGEVGCPPNVSSYNTLFSALWSSGHKIR----ALGMILEMLSK 264
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
PD ++Y I CR+ + L +M+ +PSVI+ IV+ L K +I +A
Sbjct: 265 DIDPDEITYNSLISCLCRDAMVDQAIELLVDMESSVYQPSVISYNIVLLGLSKVHRISDA 324
Query: 302 LK 303
++
Sbjct: 325 IE 326
>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 123/324 (37%), Gaps = 45/324 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI------------DELSNGYVSLAAMSTVMRRLDTR 179
+Y AM+ L K L +L++++ L GY S + R LD
Sbjct: 152 SYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGM 211
Query: 180 AMS----------VLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKS 228
+ S ++ L K + A L+ + + + F I G+ KT K
Sbjct: 212 SCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKM 271
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
A K EM HG P+ YT I + + + + + + G P V TC+
Sbjct: 272 TEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAF 331
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------------------- 329
+H L K ++ EALKV+ ++K + D YSSLI K
Sbjct: 332 IHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGI 391
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
A IYN ++ C + A KL + E +PD T++ + C + + +
Sbjct: 392 APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAE--- 448
Query: 390 VLNLMREMLSKGIVPQESTHKMLA 413
+L EM SKG+ P + L
Sbjct: 449 AFSLFHEMPSKGVQPHSFVYNALV 472
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 110/258 (42%), Gaps = 27/258 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D A S L+D ++ + ++ C I ++ ++VLIHG CK K + A + +
Sbjct: 44 DYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEIL 103
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
K M G P+ ++ IE YCRE + + L EM+++ PS ++ +++ L
Sbjct: 104 KGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHC 163
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------LSKAVRFL-------------IY 336
K + A K+ EKM + YS+LI + +A R L Y
Sbjct: 164 KDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCY 223
Query: 337 NTMIS--SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
N +IS S + EE + L +I+ KPD T + +M + +
Sbjct: 224 NAIISCLSKAGKMEEASTYLL--EIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFD-- 279
Query: 395 REMLSKGIVPQESTHKML 412
EML G++P + +L
Sbjct: 280 -EMLDHGLMPNNPLYTVL 296
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 31/213 (14%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I++ L+ G CK+ A+K M + G PD V+Y+ I+ YC+ ++ + EM
Sbjct: 397 IYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEM 456
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
KG +P ++H K + +A+ ++ +M T SF
Sbjct: 457 PSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSF-------------- 502
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
NT+I C + A +L Q++ PD T+ + C +M++ L+
Sbjct: 503 ---NTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKE 559
Query: 394 MRE--------------MLSKGIVPQESTHKML 412
M+E M++KG+ P E T+ ++
Sbjct: 560 MQERNLIVDTVFALFEKMVAKGVKPDEVTYGLV 592
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 127/331 (38%), Gaps = 90/331 (27%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
YNA+V+ L KS ++ +L +G M D+ S ++D K
Sbjct: 398 YNALVDGLCKSGD-------IQRARKLFDG------MPEKGLEPDSVTYSTMIDGYCKSE 444
Query: 193 SVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS------- 244
+VA A+ +F + + S +++ L+HG CK + A +EM Q GF+
Sbjct: 445 NVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNT 504
Query: 245 ---------------------------PDGVSYTCFIEHYCREKDFRKVDYTLKEMQE-- 275
PD V+YT I+ +C+ + + KEMQE
Sbjct: 505 LIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERN 564
Query: 276 ---------------KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
KG KP +T +V++A K + EA K+ +++ LT +
Sbjct: 565 LIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGT-- 622
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD---CETHARSLKM 377
I++ +I++ C R + A KL ++ E KP C T RS
Sbjct: 623 --------------IHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFH- 667
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+M + V ++ S G+VP +T
Sbjct: 668 --EAGKMDEATRVFEGVK---SLGLVPDTTT 693
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 70/179 (39%), Gaps = 19/179 (10%)
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M + G P+ +YT CR K + T +EMQ+ G KP C+ ++ +
Sbjct: 1 MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
I E L++ + M S + + YN +I C + A ++ +
Sbjct: 61 IDEVLRIKDVMVS----------------CGIPINLITYNVLIHGLCKFGKMEKAAEILK 104
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ CKP+ T ++ C + M L L+ EM + +VP ++ + L
Sbjct: 105 GMITLGCKPNSRTFCLLIEGYCREHNMGR---ALELLDEMEKRNLVPSAVSYGAMINGL 160
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ ++I+ CK A K E+ G G + I C+ +D + L EM
Sbjct: 589 YGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMG 648
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
E G KPS+ C+ ++ + +A ++ EA +V+E +KS + DT+ L+
Sbjct: 649 ELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLV 698
>gi|225427504|ref|XP_002263624.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Vitis vinifera]
Length = 709
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/355 (21%), Positives = 141/355 (39%), Gaps = 54/355 (15%)
Query: 88 ETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALG----KS 143
E D V EIL K + E + F WA Q Y H P YN M++ L K
Sbjct: 263 ELTTDLVIEILGKIH-----FEEKMAFRFFMWAGHQDCYSHEPRAYNEMIDILSSTKYKV 317
Query: 144 KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR------------ 191
K+F ++ +++ + V + + ++R+ + ++ L K+
Sbjct: 318 KQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYTEKHLAHLHKFAKKKKIRVKTQPEINA 377
Query: 192 -----------NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ V A +F + K+ + + +++L GWC+ R + ++EM +
Sbjct: 378 LNLLLDALCKCSLVEDAQAMFRRVKNKVKPDANTYNILFFGWCRVRNPSRGMRVLEEMIE 437
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG---CKPSVITCTIVMHALEKAKQ 297
G +PD +Y I+ +C+ + + M+ KG P+ T I++ AL ++ +
Sbjct: 438 MGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDR 497
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
E K+ + M + L D S Y +I C+ + A K +
Sbjct: 498 TEECFKLIKDMINSGVLPDVS----------------TYKQVIEGMCLAGKVEEAYKFLE 541
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
++ +PD T+ L + C K+ ++ L L M+ G VP T ML
Sbjct: 542 EMGNKGYRPDIVTYNCFLDVLCENKKSEE---ALGLYGRMIEAGCVPSVHTFNML 593
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 21/204 (10%)
Query: 128 HTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
HTP+ TYN +++ K+ +V E EL + + + M + ++++
Sbjct: 440 HTPDSFTYNTAIDSFCKAG-------MVTEATEL---FEFMRTKGSTMSSPTAKTYAIMI 489
Query: 186 DTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV-----LIHGWCKTRKSDYAQKAMKEMFQ 240
LV+ + +K+ KD I+ S + DV +I G C K + A K ++EM
Sbjct: 490 LALVQSDRTEECFKLI---KDMIN-SGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGN 545
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G+ PD V+Y CF++ C K + M E GC PSV T +++ + +
Sbjct: 546 KGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDG 605
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI 324
A + + +M C DT Y +I
Sbjct: 606 AFETWHEMDKRGCARDTDTYCVMI 629
>gi|2827705|emb|CAA16678.1| predicted protein [Arabidopsis thaliana]
Length = 598
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/363 (22%), Positives = 147/363 (40%), Gaps = 63/363 (17%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA Q Y H+ E Y +MV+ L K ++FG +W L++E+ + + + +++R
Sbjct: 127 FVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRF 186
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
D L+D L K SV A K+F +
Sbjct: 187 ASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMR-------- 238
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ K A+ + +M + GF PD V YT + Y L++M
Sbjct: 239 ---------MRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDM 289
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR- 332
+ +G +P+ T+++ AL K ++ EA+KV+ +M+ +C D Y++L+ K +
Sbjct: 290 RRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKI 349
Query: 333 ---FLIYNTMISSACVRSEEG---------------NALKLRQKIEEDSCKPDCETHARS 374
+++ + MI + SE L+L +K+ + PD +
Sbjct: 350 DKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVV 409
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLT 433
+++ C +K+ + + N EM G+ P T ++ L + L A + E+L
Sbjct: 410 IRLACKLGEVKEAVRLWN---EMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMLL 466
Query: 434 HAT 436
T
Sbjct: 467 LNT 469
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 116/279 (41%), Gaps = 24/279 (8%)
Query: 97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEAL---GKSKKFGLMWELV 153
+L +R+ S D V +A++ + G+ + +++AL G K ++E +
Sbjct: 181 VLVQRFASADMVKKAIEVLD---EMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDM 237
Query: 154 K-EIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLS 211
+ + ++ L M+ D + L+ +A AY + + +
Sbjct: 238 RMRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPN 297
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
+ + VLI CK + + A K EM ++ D V+YT + +C+ K L
Sbjct: 298 ANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLD 357
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
+M +KG PS +T +M A EK + E L++ EKM+ + D
Sbjct: 358 DMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIG------------- 404
Query: 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
IYN +I AC E A++L ++EE+ P +T
Sbjct: 405 ---IYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDT 440
>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 598
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 153/332 (46%), Gaps = 54/332 (16%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDEL-SNG--------YVSLAAMSTVMRRLD 177
TP+ TYN +V + K G + E +K ++++ S+G + L +M + R +D
Sbjct: 271 TPDVVTYNVLVNGICKE---GRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMD 327
Query: 178 TRAM----------------SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIH 220
+ ++L++ L ++ + A + K + +S ++ L+H
Sbjct: 328 AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLH 387
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G+CK +K D A + ++ M G PD V+Y + C++ L ++ KGC P
Sbjct: 388 GFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSP 447
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340
+IT V+ L KA + +A+K+ ++M++ D DT YSSL+ LS+
Sbjct: 448 VLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSR----------- 496
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCET-HARSLKMCCHKKRMKDGMLVLNLMREMLS 399
+ A+K + E +P+ T ++ L +C K R D ++ + M++
Sbjct: 497 -----EGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLC--KSRQTD--RAIDFLVFMIN 547
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431
+G P E+++ +L E L + G AKE ++ L
Sbjct: 548 RGCKPNETSYTILIEGLAYE--GMAKEALELL 577
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 114/261 (43%), Gaps = 28/261 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKA 234
D +V++ K + +A V D +S+S + ++ ++ C + K A +
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVL----DRMSVSPDVVTYNTILRSLCDSGKLKQAMEV 226
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ M Q PD ++YT IE CR+ L EM+++GC P V+T ++++ + K
Sbjct: 227 LDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICK 286
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-------------------I 335
++ EA+K M S C + ++ ++ + R++
Sbjct: 287 EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVT 346
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
+N +I+ C + G A+ + +K+ + C+P+ ++ L C +K+M + +
Sbjct: 347 FNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDR---AIEYLE 403
Query: 396 EMLSKGIVPQESTHKMLAEEL 416
M+S+G P T+ + L
Sbjct: 404 RMVSRGCYPDIVTYNTMLTAL 424
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 26/244 (10%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LI G+C+ K+ A K ++ + G PD ++Y I YC+ + L M
Sbjct: 143 LIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS--- 199
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------LSKAV 331
P V+T ++ +L + ++ +A++V ++M DC D Y+ LI + A+
Sbjct: 200 VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAM 259
Query: 332 RFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+ L YN +++ C A+K + C+P+ TH L+
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATE 437
C R D L+ +ML KG P T +L L +K LG A + ++++ H +
Sbjct: 320 CSTGRWMDAE---KLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQ 376
Query: 438 QRTF 441
+
Sbjct: 377 PNSL 380
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 19/196 (9%)
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
K ++ M HG PD + T I +CR RK L+ ++ G P VIT +++
Sbjct: 123 KFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGY 182
Query: 293 EKAKQIYEALKVYEKMK-SDDCLTDTSFYSSL---------IFILSKAVR------FLIY 336
KA +I AL V ++M S D +T + SL + +L + ++ + Y
Sbjct: 183 CKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITY 242
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
+I + C S G+A+KL ++ + C PD T+ + C + R+ + + LN +
Sbjct: 243 TILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLN---D 299
Query: 397 MLSKGIVPQESTHKML 412
M S G P TH ++
Sbjct: 300 MPSSGCQPNVITHNII 315
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 14/147 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +++ L K+ K G + +K +DE M + DT S L+ L +
Sbjct: 451 TYNTVIDGLAKAGKTG---KAIKLLDE----------MRAKDLKPDTITYSSLVGGLSRE 497
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A K F +F + I ++ F+ ++ G CK+R++D A + M G P+ SY
Sbjct: 498 GKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSY 557
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKG 277
T IE E ++ L E+ KG
Sbjct: 558 TILIEGLAYEGMAKEALELLNELCNKG 584
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 18/180 (10%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN M+ AL K K + + V+ +++LS+ S V+ +T ++D L K
Sbjct: 416 TYNTMLTALCKDGK---VEDAVEILNQLSS-----KGCSPVLITYNT-----VIDGLAKA 462
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
A K+ ++ KD + + + L+ G + K D A K E + G P+ V+
Sbjct: 463 GKTGKAIKLLDEMRAKD-LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVT 521
Query: 250 YTCFIEHYCREKDF-RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+ + C+ + R +D+ L M +GCKP+ + TI++ L EAL++ ++
Sbjct: 522 FNSIMLGLCKSRQTDRAIDF-LVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNEL 580
>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 472
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 139/346 (40%), Gaps = 50/346 (14%)
Query: 108 VVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVS-- 165
V +++ F A+ GY+H ++ MV L + KF ++V + ++ N VS
Sbjct: 29 VEKSIAVFDSATAEYANGYLHDQSSFGYMVSRLVSANKFKAAEDIVARM-KIENCVVSED 87
Query: 166 -----LAAMSTVMRRLDT----------------RAMSVLMDTLVKRNSVAHAYKVFLKF 204
V R D+ +A ++ LV+ N + A+K +
Sbjct: 88 ILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNM 147
Query: 205 KDCISLSSQI--FDVLIHGWCKTRKS-DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
++ I L + +VLI C+ + D K EM + G PD +Y I CR
Sbjct: 148 RE-IGLPPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFG 206
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
+ EM EK C P+V+T T +++ L +K + EA++ E+MK + YS
Sbjct: 207 RIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYS 266
Query: 322 SLIFILSKAVRFL-------------------IYNTMISSACVRSEEGNALKLRQKIEED 362
SL+ L K R L Y T+I+ C + A++L ++
Sbjct: 267 SLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQ 326
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
KPD + + + C + ++ N + EM+ GI P T
Sbjct: 327 GLKPDAGLYGKVISGFCAVSKFREAA---NFLDEMILGGITPNRLT 369
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 74/194 (38%), Gaps = 25/194 (12%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
S LMD L K A ++F + + C + + LI G CK +K A + + M
Sbjct: 266 SSLMDGLCKDGRSLQAMELFEMMMARGC-RPNMVTYTTLITGLCKEQKIQEAVELLDRMN 324
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI-VMHALEKAKQI 298
G PD Y I +C FR+ L EM G P+ +T I V + E + +
Sbjct: 325 LQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGL 384
Query: 299 -----YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
A +Y M+S + SL+ L C + E A+
Sbjct: 385 CTNYPSRAFTLYLSMRSRGISVEVETLDSLVKCL----------------CKKGEFQKAV 428
Query: 354 KLRQKIEEDSCKPD 367
+L +I D C P+
Sbjct: 429 QLVDEIVTDGCIPN 442
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 44/224 (19%), Positives = 85/224 (37%), Gaps = 24/224 (10%)
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
+ +G+ D S+ + F+ + + M+ + C S + + +
Sbjct: 43 YANGYLHDQSSFGYMVSRLVSANKFKAAEDIVARMKIENCVVSEDILLSICRGYGRVHRP 102
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKA----VRFLIY---------------NTM 339
+++L+V+ KMK DC Y +++ IL + + F Y N +
Sbjct: 103 FDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVL 162
Query: 340 ISSACVRSEEGNA-LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
I + C +A LK+ ++ + C PD T+ + C R+ + L EM+
Sbjct: 163 IKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAK---KLFTEMV 219
Query: 399 SKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHATEQRTF 441
K P T+ L L K++ A ++E+ E F
Sbjct: 220 EKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVF 263
>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 718
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 149/331 (45%), Gaps = 43/331 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEI-------DELS-----NGYVSLAAMSTV 172
G + T+N +++AL K+ + +++E+ DE++ G++ ++
Sbjct: 153 GIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGA 212
Query: 173 MRR----------LDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHG 221
++ L ++ VL++ K V A + L+ ++ S F+ L++G
Sbjct: 213 LKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNG 272
Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
+C+ + A + M + GF PD +Y I C+ +F K L++M + C P+
Sbjct: 273 FCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPN 332
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMIS 341
+T ++ AL K +I A + + S L D +NT+I
Sbjct: 333 TVTYNTLISALCKENEIEAATDLARILVSKGLLPDVC----------------TFNTLIQ 376
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C+ + A+++ ++++ CKPD T++ + C+++R+K+ ++ L++EM S G
Sbjct: 377 GLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALM---LLKEMESSG 433
Query: 402 IVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
+ L + L + + + +A+E D++
Sbjct: 434 CARNAVVYNTLIDGLCKSRRIEDAEEIFDQM 464
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 108/238 (45%), Gaps = 23/238 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L+D L K + A ++F + + +S SS ++ LI G CK ++ + A + M +M
Sbjct: 442 NTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIM 501
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD +Y + ++CR D K ++ M GC+P + T ++ L +A ++
Sbjct: 502 EGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDV 561
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A K+ ++ I + A YN +I + +R ++L +++
Sbjct: 562 ASKLLRSVQMKG-----------IVLTPHA-----YNPVIQALFMRKRTKEGMRLFREMM 605
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLAEEL 416
E S PD TH + C+ G + ++ EML KGI+P+ + LAE L
Sbjct: 606 EKSDPPDALTHKIVFRGLCN----GGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGL 659
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 22/208 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ LI G C ++ D A + +EM G PD +Y+ I+ C E+ ++ LKEM+
Sbjct: 371 FNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEME 430
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
GC + + ++ L K+++I +A +++++M+ + Y++LI L K R
Sbjct: 431 SSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVE 490
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
YN++++ C + A + Q + + C+PD T+ +
Sbjct: 491 EASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLI 550
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C R+ + L+R + KGIV
Sbjct: 551 GGLCRAGRVD---VASKLLRSVQMKGIV 575
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 115/260 (44%), Gaps = 23/260 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
DT ++ ++ LV+ N + + K + I L F+VLI CK + A +
Sbjct: 122 DTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILML 181
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM HG PD +++T ++ + E D K+M GC + ++ ++++ K
Sbjct: 182 EEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKE 241
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK---------AVRFLI----------Y 336
++ EAL+ ++ + D ++SL+ + V F+I Y
Sbjct: 242 GRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTY 301
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N++IS C E A+++ Q++ C P+ T+ + C + ++ +L R
Sbjct: 302 NSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAAT---DLARI 358
Query: 397 MLSKGIVPQESTHKMLAEEL 416
++SKG++P T L + L
Sbjct: 359 LVSKGLLPDVCTFNTLIQGL 378
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 24/221 (10%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ F LI + + + K ++ + GF PD Y + + + V+
Sbjct: 89 NATTFATLIQSFTNFHEIENLLKILEN--ELGFKPDTNFYNIALNALVEDNKLKLVEMLH 146
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--FI-- 326
+M +G V T +++ AL KA Q+ A+ + E+M + D +++L+ FI
Sbjct: 147 SKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEE 206
Query: 327 --LSKAVR----FLIYNTMISSACVRS------EEG---NALKLRQKIEEDSCKPDCETH 371
L+ A++ L Y ++++ V+ +EG AL+ ++ E+ PD T
Sbjct: 207 GDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTF 266
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C + D + +++ M E KG P T+ L
Sbjct: 267 NSLVNGFCRIGNVNDALDIVDFMIE---KGFDPDVYTYNSL 304
>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Brachypodium distachyon]
Length = 651
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 145/347 (41%), Gaps = 46/347 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE---LSNGYVSLAAMSTVMRRLDTRAMSVLMDTL 188
T N MV + K+ +FG + ++ E+++ + + R D A L+D++
Sbjct: 161 TLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSM 220
Query: 189 VKR---------NSVAH----------AYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKS 228
V + NSV A +VF C ++ + F++LI G+C+ +
Sbjct: 221 VSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGEL 280
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+ A + KEM +PD VS++C I + R + L+EM+E G P + T+V
Sbjct: 281 EEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMV 340
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR---------------- 332
+ +A + EAL+V ++M + CL D Y++L+ L K R
Sbjct: 341 IGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGV 400
Query: 333 ---FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ T+I C AL+ I + +PD T+ + C R D
Sbjct: 401 PPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMC---RQGDLGK 457
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEE-LEKKSLGNAKERIDELLTHA 435
L +M S+ I P T+ +L + EK + NA +DE++
Sbjct: 458 ANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKG 504
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 135/304 (44%), Gaps = 46/304 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN++++ L ++ + W+ +E+ AM D R+ ++L+ +
Sbjct: 231 TYNSVLKGLLRNGR----WDKAREV---------FRAMDACGVAPDVRSFNMLIGGFCRA 277
Query: 192 NSVAHAYKVFLKFK------DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+ A + + + + D +S F LI + + + D+A + ++EM + G P
Sbjct: 278 GELEEALRFYKEMRGRRVTPDVVS-----FSCLIGLFTRRGEMDHAAEYLREMREFGLMP 332
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
DGV YT I +CR + EM GC P V+T +++ L K +++ +A ++
Sbjct: 333 DGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELL 392
Query: 306 EKMKSDDCLTDTSFYSSLIFI------LSKAVRF-------------LIYNTMISSACVR 346
+MK D +++LI + KA++F + YNT+I C +
Sbjct: 393 NEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQ 452
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
+ G A +L + P+ T++ + C K ++ + L+ EM++KGIVP
Sbjct: 453 GDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLD---EMVNKGIVPNI 509
Query: 407 STHK 410
T+
Sbjct: 510 MTYN 513
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 107/272 (39%), Gaps = 59/272 (21%)
Query: 195 AHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI 254
A AY++ L +++ ++++H +CKT + + EM + PD V++ +
Sbjct: 144 ADAYRLVLSSNS--EVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMV 201
Query: 255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL------EKAKQIY--------- 299
+ R D + M KG KP ++T V+ L +KA++++
Sbjct: 202 DARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVA 261
Query: 300 --------------------EALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRF 333
EAL+ Y++M+ D +S LI + ++ A +
Sbjct: 262 PDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEY 321
Query: 334 L-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
L IY +I C AL++R ++ C PD T+ L C
Sbjct: 322 LREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCK 381
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
++R+ D +LN M+E +G+ P T L
Sbjct: 382 ERRLSDAEELLNEMKE---RGVPPDLCTFTTL 410
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/298 (20%), Positives = 118/298 (39%), Gaps = 42/298 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMSTVMRRLDTR 179
TYN ++ L K ++ EL+ E+ E L +GY + ++ DT
Sbjct: 371 TYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTI 430
Query: 180 A----------MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKS 228
+ + L+D + ++ + A +++ + + + +LI C+ +
Sbjct: 431 SDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQV 490
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A + EM G P+ ++Y I+ YCR + K L +M+ P +IT +
Sbjct: 491 DNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTL 550
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
+H K +++EA + + M++++ D + YN +IS V
Sbjct: 551 IHGYVKEGKMHEAFNLLKIMENENVQPDA----------------VTYNMIISGFSVHGN 594
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
A + +K+ +PD T+ + M + L EML KG+ P +
Sbjct: 595 MQEADWVYKKMGARGIEPDRYTY---MSMINGHVVAGNSKKSFQLHDEMLQKGLAPDD 649
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 47/105 (44%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LIHG+ K K A +K M PD V+Y I + + ++ D+ K+M
Sbjct: 547 YNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMG 606
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF 319
+G +P T +++ A ++ +++++M D F
Sbjct: 607 ARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPDDKF 651
>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
Length = 581
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/329 (21%), Positives = 139/329 (42%), Gaps = 40/329 (12%)
Query: 127 MHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
+++P+ ++N +++ + + + ELV+ ++E DT +++
Sbjct: 244 LYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSP-------------DTVTHNII 290
Query: 185 MDTLVKRNSVAHAYKVFLKF-KDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
+D L + N V+ ++V + +D + + + + F +I G+CK K + A +M G
Sbjct: 291 VDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASG 350
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
P+ V+Y I Y + D ++M C P V+T + ++ + Q+ +AL
Sbjct: 351 IMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDAL 410
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSK------AVRFL--------------IYNTMISS 342
+++ M + +S +I L K A+R L IYN +I
Sbjct: 411 RIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNPVIDV 470
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C + A +R+ +EE C+PD T+ + C K R+ + ++ + EM+ G
Sbjct: 471 LCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFH---EMVEAGC 527
Query: 403 VPQESTHKMLAEELEKKSLGNAKERIDEL 431
P T L K + N + + L
Sbjct: 528 SPDSITVNCFISCLLKAGMPNEVDHVMRL 556
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 116/257 (45%), Gaps = 22/257 (8%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQ 232
R++ A + LM +L+ R V +F ++ S + F+V+I G C+ + A
Sbjct: 210 RVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQKAL 269
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG-CKPSVITCTIVMHA 291
+ ++ M + G SPD V++ ++ CR + + L+ +Q G C P+V+T T V+
Sbjct: 270 ELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISG 329
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN 351
KA ++ +A+ VY M + + +T + YN +I+ + G+
Sbjct: 330 YCKAGKLEDAMAVYNDMVASGIMPNT----------------VTYNVLINGYGKVGDLGS 373
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A+++ Q++ C PD T + + C ++ D L + +M I P T +
Sbjct: 374 AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDA---LRIWSDMAQHRIQPNVYTFSI 430
Query: 412 LAEELEKKSLGNAKERI 428
+ L K++ + R+
Sbjct: 431 IIHSLCKQNRSDEAIRL 447
>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 727
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 117/284 (41%), Gaps = 33/284 (11%)
Query: 120 AKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTR 179
A+ TG T TY ++ K K E KE M L+
Sbjct: 291 ARIDTGLSPTAVTYGCLINLYTKLGKMMKALEFCKE-------------MKAQGITLNRN 337
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
S+L+D V+ A+A+ VF + I +++L+ +CK+R+ A + + M
Sbjct: 338 TYSMLVDGYVQLGDFANAFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRM 397
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
G SP +Y I+ + + D R T+ EM+ GC+P+ T ++MH L + QI
Sbjct: 398 KTRGCSPTIQTYITIIDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQI 457
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK 358
A V ++M+ + F Y T++ E G A K ++
Sbjct: 458 DRAASVIDEME----------------LAGVQPNFRSYTTLMQGFASIGEIGLAFKCLKR 501
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
+ E + KP ++A LK CC RM++ + V EM G+
Sbjct: 502 VNEITQKPPIISYASLLKACCKAGRMQNAIAV---TEEMAFAGV 542
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 100/203 (49%), Gaps = 17/203 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
+Y +++ + GL ++ +K ++E++ ++ + + L+ K
Sbjct: 478 SYTTLMQGFASIGEIGLAFKCLKRVNEIT-------------QKPPIISYASLLKACCKA 524
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ +A V + F + +++ IF+ L+ GW + A M++M Q GF+PD S
Sbjct: 525 GRMQNAIAVTEEMAFAG-VPMNNYIFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHS 583
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
YT F+ C+ D +K T++EM+++ +P++ T TI++H +AL Y++MK
Sbjct: 584 YTSFVNACCKAGDMQKATETIEEMKQQDLQPNLQTYTILIHGWTSVSHPEKALICYDEMK 643
Query: 310 SDDCLTDTSFYSSLIF-ILSKAV 331
+ + D Y ++ +LSKA
Sbjct: 644 AAGLIPDKPLYYCIVTSLLSKAA 666
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/221 (18%), Positives = 93/221 (42%), Gaps = 25/221 (11%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ F +I G+ + + A+K + ++ + Y+ I YC+ + + + +
Sbjct: 192 NAATFSAIISGYGSSGNVEAAEKWFQRSVSENWNHNVAIYSSIIHAYCKAGNMERAEALV 251
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS--DDCLTDTSF-YSSLIFIL 327
+M+E+G + ++ I+M + + L V+ K+K+ D L+ T+ Y LI +
Sbjct: 252 ADMEEQGLEATLGLYNILMDGYARCHIEAQCLNVFHKLKARIDTGLSPTAVTYGCLINLY 311
Query: 328 SKAVRFL-------------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
+K + + Y+ ++ + NA + + + E +PD
Sbjct: 312 TKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQLGDFANAFSVFEDMSEAGIEPDW 371
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
T+ LK C ++M + +L M+ ++G P T+
Sbjct: 372 VTYNILLKAFCKSRQMTRAIQLLGRMK---TRGCSPTIQTY 409
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/241 (19%), Positives = 101/241 (41%), Gaps = 26/241 (10%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR---EKDFRKVDYTL 270
I+ +IH +CK + A+ + +M + G Y ++ Y R E V + L
Sbjct: 230 IYSSIIHAYCKAGNMERAEALVADMEEQGLEATLGLYNILMDGYARCHIEAQCLNVFHKL 289
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------ 324
K + G P+ +T +++ K ++ +AL+ ++MK+ + + YS L+
Sbjct: 290 KARIDTGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQL 349
Query: 325 --FILSKAV-----------RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
F + +V ++ YN ++ + C + A++L +++ C P +T+
Sbjct: 350 GDFANAFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTY 409
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDE 430
+ + + D + + EM G P +T+ ++ L + + A IDE
Sbjct: 410 ---ITIIDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDE 466
Query: 431 L 431
+
Sbjct: 467 M 467
>gi|156070779|gb|ABU45192.1| unknown [Petunia integrifolia subsp. inflata]
Length = 406
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 117/260 (45%), Gaps = 27/260 (10%)
Query: 184 LMDTLVKRNSVA----HAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEM 238
+ ++++ +A HA K++ + D + S I F+VL+ T++ D ++ EM
Sbjct: 102 FLSSIIRSYGIAGMFDHALKIYDQMDDLGTPRSAISFNVLLSACVNTKQYDRVRQLFDEM 161
Query: 239 -FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
++GF PD VSY I YC K LKEM+EKG + + IT T ++HA K
Sbjct: 162 PVKYGFLPDKVSYGILIRSYCEMGLPEKAMERLKEMEEKGVEITAITFTTLLHAFYKKGM 221
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILS----KAVRFLI--------------YNTM 339
EA KV+ +M + C D Y+ I + + V+ LI YN +
Sbjct: 222 GDEAEKVWNEMVNKGCGPDVGAYNVKIRNIQGGDPEGVKALIEEMNNAGLKPDTISYNYL 281
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
++ C A K+ + +E + C P+ T + C K R + G V +E +
Sbjct: 282 MTCYCENGLMDEAQKVYEDLETNGCNPNAATFRSLILYLCKKGRFETGYKVF---KESVR 338
Query: 400 KGIVPQESTHKMLAEELEKK 419
+P +T K L E L K+
Sbjct: 339 VNKMPDFNTLKCLVEGLVKR 358
>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
Length = 564
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 131/311 (42%), Gaps = 45/311 (14%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
GY+ TYNA+V L K+ D++ + + +M D SVL
Sbjct: 211 GYVPNVITYNALVNGLCKA-------------DKMERAHAMIESMVDKGVTPDVITYSVL 257
Query: 185 MDTLVKRNSVAHAYKVF--LKFKDC---ISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEM 238
+D K + V A ++ + + C + + ++ F++LI G CK + A +EM
Sbjct: 258 VDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEM 317
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
PD +++ I+ C+ L M G P+V+T ++H L K+ +I
Sbjct: 318 VAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRI 377
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTM 339
EA + E+M S C+ D+ Y SL++ L +A R + YN +
Sbjct: 378 EEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNIL 437
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV--LNLMREM 397
+ + A+ + +++ +PD T A C + G L + L+R +
Sbjct: 438 VDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAA-----CFSGLHRSGNLAGTMELLRVV 492
Query: 398 LSKGIVPQEST 408
L+KG++P +T
Sbjct: 493 LAKGMLPDATT 503
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 125/292 (42%), Gaps = 28/292 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY+ ++ L K + EL++E+ S V+ + T + +D L K+
Sbjct: 109 TYSVLINGLCKVGRIDEARELIQEMTRKS---------CDVLPNIIT--YNSFLDGLCKQ 157
Query: 192 NSVAHAYKVFLKFKDC---ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
+ A A ++ +D +S + F LI G CK + D A +M G+ P+ +
Sbjct: 158 SMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVI 217
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+Y + C+ + ++ M +KG P VIT ++++ A KA ++ EAL++ M
Sbjct: 218 TYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGM 277
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
S C + + + K + +N +I+ AC A L +++ + +PD
Sbjct: 278 ASRGCTPN-------VLVPDK----VTFNILIAGACKAGNFEQASALFEEMVAKNLQPDV 326
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
T + C +++ +L+LM + G+ P T+ L L K
Sbjct: 327 MTFGALIDGLCKAGQVEAARDILDLMGNL---GVPPNVVTYNALVHGLCKSG 375
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 113/243 (46%), Gaps = 25/243 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLK--FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
++++ +L + A A ++F +D ++ + ++ +I+G CK+ + +E+
Sbjct: 5 NIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELV 64
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ G PD V+Y I+ C+ D + +M +GC P+V+T +++++ L K +I
Sbjct: 65 ERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRID 124
Query: 300 EALKVYEKM--KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
EA ++ ++M KS D L + + YN+ + C +S A +L +
Sbjct: 125 EARELIQEMTRKSCDVLPN----------------IITYNSFLDGLCKQSMTAEACELMR 168
Query: 358 KIEEDSCK--PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ + S + PD T + + C ++ + V + +M++ G VP T+ L
Sbjct: 169 SLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFD---DMIAGGYVPNVITYNALVNG 225
Query: 416 LEK 418
L K
Sbjct: 226 LCK 228
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 51/113 (45%)
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
S + L++ C+ ++D A + + E+ G+ PD V+Y ++ + + L+
Sbjct: 396 SITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLE 455
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
EM KG +P T L ++ + +++ + + L D + SS++
Sbjct: 456 EMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSIL 508
>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
Length = 1024
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 22/218 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F I G+ KT K A K EM HG P+ YT I + + + + + +
Sbjct: 546 FGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLH 605
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
G P V TC+ +H L K ++ EALKV+ ++K + D YSSLI K
Sbjct: 606 ALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVE 665
Query: 330 --------------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
A IYN ++ C + A KL + E +PD T++ +
Sbjct: 666 KAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMI 725
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
C + + + +L EM SKG+ P + L
Sbjct: 726 DGYCKSENVAE---AFSLFHEMPSKGVQPHSFVYNALV 760
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 28/216 (12%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ LI G+CK+ K A + +EM PD V+YT I+ +C+ + + KEMQ
Sbjct: 790 FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQ 849
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF--------- 325
E+ +T T +M+ K Q E ++EKM + D Y +I+
Sbjct: 850 ERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLV 909
Query: 326 --------ILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD---CETHA 372
++ K + + I++ +I++ C R + A KL ++ E KP C T
Sbjct: 910 EAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLV 969
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
RS +M + V ++ S G+VP +T
Sbjct: 970 RSFH---EAGKMDEATRVFEGVK---SLGLVPDTTT 999
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 99/242 (40%), Gaps = 20/242 (8%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D + L+ L K + A +V ++ + ++ + I+ ++I G C+ D A +
Sbjct: 226 FDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVEL 285
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ M + G P+ +YT CR K + T +EMQ+ G KP C+ ++ +
Sbjct: 286 KRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMR 345
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
I E L++ + M S C + + YN +I C + A +
Sbjct: 346 EGDIDEVLRIKDVMVS--C--------------GIPINLITYNVLIHGLCKFGKMEKAAE 389
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ + + CKP+ T ++ C + M L L+ EM + +VP ++ +
Sbjct: 390 ILKGMVTLGCKPNSRTFCLLIEGYCREHNMGR---ALELLDEMEKRNLVPSAVSYGAMIN 446
Query: 415 EL 416
L
Sbjct: 447 GL 448
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 108/265 (40%), Gaps = 30/265 (11%)
Query: 159 LSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK-------FKDCISL- 210
L +G++ + V+R D + L+ N + H F K K ++L
Sbjct: 339 LIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLG 398
Query: 211 ---SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+S+ F +LI G+C+ A + + EM + P VSY I C KD +
Sbjct: 399 CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLAN 458
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
L++M G KP+V+ +I++ A +I EA ++ + M D Y+++I L
Sbjct: 459 KLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 518
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
SKA + EE + L +I+ KPD T + +M +
Sbjct: 519 SKAGKM--------------EEASTYLL--EIQGRGLKPDAVTFGAFILGYSKTGKMTEA 562
Query: 388 MLVLNLMREMLSKGIVPQESTHKML 412
+ EML G++P + +L
Sbjct: 563 AKYFD---EMLDHGLMPNNPLYTVL 584
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 82/356 (23%), Positives = 131/356 (36%), Gaps = 86/356 (24%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE---------------LSNGYV---SLAAMSTVM 173
T+ A + LG SK G M E K DE L NG+ +L ++
Sbjct: 545 TFGAFI--LGYSKT-GKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIF 601
Query: 174 RRL-------DTRAMSVLMDTLVKRNSVAHAYKVFLKFK------DCISLSSQI------ 214
RRL D + S + L+K V A KVF + K D + SS I
Sbjct: 602 RRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQ 661
Query: 215 ------------------------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
++ L+ G CK+ A+K M + G PD V+Y
Sbjct: 662 GEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTY 721
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ I+ YC+ ++ + EM KG +P ++H K + +A+ ++ +M
Sbjct: 722 STMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQ 781
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
T SF NT+I C + A +L Q++ PD T
Sbjct: 782 KGFATTLSF-----------------NTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVT 824
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
+ + C +M++ L L +EM + ++ T+ L K LG + E
Sbjct: 825 YTTVIDWHCKAGKMEEANL---LFKEMQERNLIVDTVTYTSLMYGYNK--LGQSSE 875
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 4/137 (2%)
Query: 192 NSVAHAYKVFLKFKDCISLSSQ----IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
N + + +VF F+ ++ + + ++I+ CK A K E+ G G
Sbjct: 868 NKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKG 927
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+ I C+ +D + L EM E G KPS+ C ++ + +A ++ EA +V+E
Sbjct: 928 TIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEG 987
Query: 308 MKSDDCLTDTSFYSSLI 324
+KS + DT+ L+
Sbjct: 988 VKSLGLVPDTTTLIDLV 1004
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 110/268 (41%), Gaps = 45/268 (16%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F W+++Q G ++++ + L S+ FGL ++ ++ + Y S + + +V+
Sbjct: 93 FYWSQSQMGVPQFLDSFSILAVQLCNSELFGLANGVLTQM--IRTPYSSSSILDSVLFWF 150
Query: 177 DTRAMS------VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDY 230
S +L+D+ + + A VF K+ L S I C + D
Sbjct: 151 RNYGGSSPVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLI-------RCNSLLKDL 203
Query: 231 AQKAMKEMF----------QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
+ M E+F + GF D +YT + C+ D R L EM EKG P
Sbjct: 204 LKCGMMELFWKVYNGMLDAKMGF--DVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNP 261
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340
+ ++V+ + + I EA+++ M + +T Y T+I
Sbjct: 262 NEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTY-----------------TII 304
Query: 341 SSACVRSEEGNALKLR-QKIEEDSCKPD 367
++ R++ N KL +++++ KPD
Sbjct: 305 TAGLCRAKRMNEAKLTFEEMQKTGLKPD 332
>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
Length = 668
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 117/273 (42%), Gaps = 26/273 (9%)
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ A++ L+ L VA A +FL+F I ++ ++ L+ G+ + A++ +
Sbjct: 263 SNAVTALISALGSAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVL 322
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM Q G +PD +Y+ ++ Y R + LKEM+ G KPS + ++
Sbjct: 323 DEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDR 382
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIY 336
+A V +M++ D FY+ +I K + +
Sbjct: 383 GDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTW 442
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT+I + C A++L +++ E +C P T+ + + ++R + V ++ E
Sbjct: 443 NTLIDAHCKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWEG---VEAMLSE 499
Query: 397 MLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
M +G+VP T+ L + + G KE ID
Sbjct: 500 MKEQGLVPNIITYTTLVDVYGRS--GRYKEAID 530
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 113/275 (41%), Gaps = 23/275 (8%)
Query: 162 GYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIH 220
+ L M R D +V++DT K N + HA F + ++ I ++ LI
Sbjct: 388 AFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLID 447
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
CK + D A + +EM + P +Y I ++ + V+ L EM+E+G P
Sbjct: 448 AHCKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVP 507
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----------- 329
++IT T ++ ++ + EA+ E MK+D + Y +L+ ++
Sbjct: 508 NIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVV 567
Query: 330 --------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
V L+ N++I++ A + Q ++E+ +PD T+ +K
Sbjct: 568 KAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMKENGLRPDVITYTTLMKALIRV 627
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ V + EM++ G P ML L
Sbjct: 628 EQFDK---VPVIYEEMITSGCAPDRKARAMLRSAL 659
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 183 VLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L++ +R HA V K D + +S + + LI+ + + R+ A ++ M ++
Sbjct: 549 ALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMKEN 608
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
G PD ++YT ++ R + F KV +EM GC P ++ AL K +
Sbjct: 609 GLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAMLRSALRYMKHM 665
>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 418
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 130/315 (41%), Gaps = 46/315 (14%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRL----DTRAMSVLM 185
+T M+E L K K F L+W +EI L GY SL + +M R D R +
Sbjct: 102 DTCKKMLEHLVKLKYFNLVWAFYEEI--LECGYPASLYFFNILMHRFCKEGDIRLAQSVF 159
Query: 186 D---------TLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKT 225
D ++V N++ + Y + L S + + VLI+G CK
Sbjct: 160 DAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKE 219
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
K D A + +EM G P+GV++T I+ +C+ K+M + P +IT
Sbjct: 220 SKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITY 279
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
+++ L K + +A + ++M D + Y T+I C
Sbjct: 280 NTLIYGLCKKGALNQAHDLMDEMSMKGLKPDK----------------ITYTTLIDGCCK 323
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ A + R+++ +++ + D + + C + R D +MREMLS G+ P
Sbjct: 324 EGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE---KMMREMLSFGLKPD 380
Query: 406 ESTHKMLAEELEKKS 420
T+ M+ E KK
Sbjct: 381 TGTYTMIINEFCKKG 395
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 14/154 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K +L+ E MS + D + L+D K
Sbjct: 278 TYNTLIYGLCKKGALNQAHDLMDE-------------MSMKGLKPDKITYTTLIDGCCKE 324
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A++ + ++ I L + LI G C+ +S A+K M+EM G PD +Y
Sbjct: 325 GDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTY 384
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
T I +C++ D K LKEMQ G PSV+T
Sbjct: 385 TMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVT 418
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G CK D A + K M Q D V+YT I C+E + ++EM
Sbjct: 314 YTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREML 373
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
G KP T T++++ K +++ K+ ++M+ D
Sbjct: 374 SFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRD 410
>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 761
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 28/223 (12%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ ++I G CK R+ D A++ KEM G PD +SYT I +CR + K EM
Sbjct: 124 YSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEML 183
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------S 328
+ G + V T ++++ L K ++ EA ++ E M C+ D YS+LI L S
Sbjct: 184 DVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRIS 243
Query: 329 KAVRFLI-------------YNTMISSACVRSEEGNALKLRQKIEEDS------CKPDCE 369
+A R + Y T++ C AL+L Q++ D+ CKP
Sbjct: 244 EATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLI 303
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+++ + C +R + L +EM ++GI+P ++ L
Sbjct: 304 SYSIIIDGLCKDRREDEAR---ELFKEMKAQGIMPDVISYTTL 343
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 19/185 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ ++I G CK + D A++ KEM G PD +SYT I +CR ++ Y EM
Sbjct: 486 YSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMV 545
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ G +P V T ++++ L K ++ EA ++ E M C+ +T +
Sbjct: 546 DIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNT----------------V 589
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
Y T++ C+ A +L K+++ C PD T+ +K C +K L L
Sbjct: 590 TYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTA---LELH 646
Query: 395 REMLS 399
++MLS
Sbjct: 647 KKMLS 651
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ ++I G CK R+ D A++ KEM G PD +SYT I +C + K EM
Sbjct: 305 YSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEML 364
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ G +P V T ++++ L K ++ EA K+ E + C+ D +
Sbjct: 365 DVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDV----------------V 408
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
T++ C++ A +L K+++ C P+ T A +K C +K + L L
Sbjct: 409 TCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIK---IALELH 465
Query: 395 REMLS 399
+ MLS
Sbjct: 466 KNMLS 470
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 13/204 (6%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
VLI CK K A K ++ + Q G PD V+ T ++ C + K +MQ+
Sbjct: 377 VLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKL 436
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336
GC P+V+TC +M L ++ I AL++++ M L+DTS Y ++ + Y
Sbjct: 437 GCMPNVVTCATLMKGLCQSGNIKIALELHKNM-----LSDTSPYG-----INCKPNAISY 486
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
+ +I C E A +L ++++ PD ++ + C + KD + N E
Sbjct: 487 SIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFN---E 543
Query: 397 MLSKGIVPQESTHKMLAEELEKKS 420
M+ G+ P +T +L + L K+
Sbjct: 544 MVDIGVQPDVTTFSVLIDMLCKEG 567
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 110/247 (44%), Gaps = 25/247 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKT 225
+ +A+ V+ D ++ S+ H + K+KD L +++ F VLI CK
Sbjct: 508 EMKALGVIPD-VISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKE 566
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
K A + ++ M Q G P+ V+YT ++ C + +MQ+ GC P V+T
Sbjct: 567 GKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTY 626
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
+M L + I AL++++KM SD T+F +I Y+ +I C
Sbjct: 627 GTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVIS----------YSIIIDGLCK 676
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
E A +L ++++ P+ ++ + C +++D +L EM+ +G+
Sbjct: 677 HGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAK---HLFNEMVDQGVQLN 733
Query: 406 ESTHKML 412
T+ ++
Sbjct: 734 AVTYSVM 740
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 109/250 (43%), Gaps = 29/250 (11%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKA 234
LD S L+ L ++ ++ A ++F+ K I + L+ G C+T K + A
Sbjct: 43 LDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHL 102
Query: 235 MKEMF----QHGFS--PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+EM Q+G P VSY+ I+ C+++ + KEM+ +G P VI+ T +
Sbjct: 103 HQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSL 162
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------------------- 329
+H ++ + +A ++ +M +D + S LI IL K
Sbjct: 163 IHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGC 222
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ + Y+T+I C++ A +L +++ C+PD + +K C +
Sbjct: 223 ILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTA-- 280
Query: 390 VLNLMREMLS 399
L L +EML+
Sbjct: 281 -LQLHQEMLN 289
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ ++I G CK + D A++ KEM G P+ +SYT I +CR + EM
Sbjct: 667 YSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMV 726
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
++G + + +T ++++H K QI +AL ++KM+++
Sbjct: 727 DQGVQLNAVTYSVMIHGFCKEGQIDKAL--FQKMEAN 761
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 13/204 (6%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
VLI +CK K A + ++ M Q G D V+Y+ I+ C + + M++
Sbjct: 15 VLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKL 74
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336
GC+P I +M L + +I AL ++++M L DTS Y + + Y
Sbjct: 75 GCRPDAIAYGTLMKGLCQTGKINIALHLHQEM-----LNDTSQYG-----IKCKPTLVSY 124
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
+ +I C E A +L ++++ PD ++ + C + + + N E
Sbjct: 125 SIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFN---E 181
Query: 397 MLSKGIVPQESTHKMLAEELEKKS 420
ML GI +T ML + L K+
Sbjct: 182 MLDVGIRSDVTTSSMLIDILCKEG 205
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
+T + L+ L + ++ A ++F+K + L + + L+ G C+T A +
Sbjct: 587 NTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELH 646
Query: 236 KEMF----QHG--FSPDGVSYTCFIEHYC---REKDFRKVDYTLKEMQEKGCKPSVITCT 286
K+M Q+G F PD +SY+ I+ C RE + R++ KEM+ G P+VI+ T
Sbjct: 647 KKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEAREL---FKEMKALGVIPNVISYT 703
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
++H ++ ++ +A ++ +M + YS +I
Sbjct: 704 SLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMI 741
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 25/173 (14%)
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M G PD + I+ +C+E + + L+ M ++GC ++T + ++ L +
Sbjct: 1 MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
I EA +++ MK C D + Y T++ C + AL L Q
Sbjct: 61 ISEATQLFMSMKKLGCRPDA----------------IAYGTLMKGLCQTGKINIALHLHQ 104
Query: 358 KIEEDS------CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
++ D+ CKP +++ + C +R + L +EM ++G++P
Sbjct: 105 EMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEAR---ELFKEMKAQGMMP 154
>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 657
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 115/272 (42%), Gaps = 26/272 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++LMD K+ + +A+ +F + KD I + ++I G CK +S + +
Sbjct: 323 TILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVS 382
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
GF P + Y I+ + +E + +EM E G PS +T T ++ K I
Sbjct: 383 QGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDL 442
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSK--------------------AVRFLIYNTMI 340
ALK+ MK D Y +LI K RF IYN+MI
Sbjct: 443 ALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRF-IYNSMI 501
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+ + A+ L +K+ + D +T+ + R+ + ++ EMLSK
Sbjct: 502 TGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRL---LYASDIHTEMLSK 558
Query: 401 GIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
GI+P + H +L L K NA++ ++++
Sbjct: 559 GILPDDRAHTVLINGLCNKGQFENARKILEDM 590
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 118/279 (42%), Gaps = 33/279 (11%)
Query: 158 ELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFD 216
+L N +VS + T M + ++D +K ++ A V+ + + I+ S+ +
Sbjct: 375 DLFNKFVSQGFVPTCM------PYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYT 428
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
LI G+CK D A K + +M + G D +Y I+ +C+ +D + L E++
Sbjct: 429 SLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGA 488
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-- 334
G P+ ++ + + EA+ +Y+KM ++ D Y+SLI L K+ R L
Sbjct: 489 GLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYA 548
Query: 335 -----------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
+ +I+ C + + NA K+ + + + P + +
Sbjct: 549 SDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLI-- 606
Query: 378 CCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLAE 414
K+G L L EML +G+VP T+ +L
Sbjct: 607 ---AGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVN 642
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 135/331 (40%), Gaps = 38/331 (11%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+++G + TY+ +++ K+ +E E M T R ++
Sbjct: 172 SESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSE-------------MKTKGIRSSVYSL 218
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+ +++ +K S +A+ +F + + F+ L+ CK K + A E+
Sbjct: 219 NSILEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAK 278
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G SP+ VSY I +CR+ + KEM + G P+ +T TI+M K I A
Sbjct: 279 GISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENA 338
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL----IYNTMISSACVRS---------- 347
++ +MK + L + +I L KA R ++N +S V +
Sbjct: 339 FSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDG 398
Query: 348 --EEGNALKLRQKIEEDSCK----PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
+EGN + L + + C+ P T+ + C + L L L+ +M KG
Sbjct: 399 FIKEGN-INLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNID---LALKLLNDMKRKG 454
Query: 402 IVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
+ + L + +++ + +A E ++EL
Sbjct: 455 LKMDIKAYGTLIDGFCKRRDMKSAHELLNEL 485
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 21/233 (9%)
Query: 189 VKRNSVAHAYKVFLKFKDCI-SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
VK +VA A ++ +C S++ + L+ G+C A + E+ + G P+
Sbjct: 121 VKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNK 180
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
V+Y+ I+ C+ + K EM+ KG + SV + ++ K + A ++
Sbjct: 181 VTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMF-- 238
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
+D L S +NT++S C + A L ++ P+
Sbjct: 239 ---NDALE------------SGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPN 283
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
++ + C K + V +EML G P T +L + KK
Sbjct: 284 VVSYNNIILGHCRKDNINAACKVY---KEMLDNGFTPNAVTFTILMDGYFKKG 333
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 92/230 (40%), Gaps = 30/230 (13%)
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKF------KDCISLSSQIFDVLIHGWCKTRKSDYAQ 232
+ M++L+ +V++N A ++ K DC +L + L G + + Q
Sbjct: 6 QCMNILLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQHFLQ 65
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ G D +Y+ F+ C + + L+EM+ G P T T V+ A
Sbjct: 66 AKAR-----GVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITAC 120
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA 352
K + EAL++ + M +C K++ + +++ C++ +A
Sbjct: 121 VKEGNVAEALRLKDDMV--NC--------------GKSMNLAVATSLMKGYCMQGNLRSA 164
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
L L +I E P+ T++ + CC ++ EM +KGI
Sbjct: 165 LVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEK---AFEFYSEMKTKGI 211
>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
Length = 631
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 137/305 (44%), Gaps = 37/305 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ AL KSK+ L +E ++ G V LD S LMD K
Sbjct: 303 TYNLLI-ALCKSKQLEEALTLFQEAEQ--GGVV-----------LDVFTYSYLMDAFGKA 348
Query: 192 NSVAHAYKVFLKFKDCISL-SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
A A +VF + + + +++VLI K K D A + +++M + G PD +Y
Sbjct: 349 GRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTY 408
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I+ + K M+ + P V+T +++ L+K ++ EA ++++M++
Sbjct: 409 NIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQA 468
Query: 311 DDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGN 351
+ C+ D + + +LI L+KA R IYN +IS C +
Sbjct: 469 NKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDK 528
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
+L Q + E SC PD T+ ++ + +R M + L++EM+ +G P +T+ +
Sbjct: 529 GYELFQDMIECSCFPDSITY--TILVLGFSRRGHTSM-AMELLQEMVREGHTPALATYNV 585
Query: 412 LAEEL 416
L L
Sbjct: 586 LIRSL 590
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 92/199 (46%), Gaps = 16/199 (8%)
Query: 128 HTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
H+P+ TYN ++ L K ++ +L E+ + M L T L+
Sbjct: 436 HSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQA-----------NKCMPDLTT--FGTLI 482
Query: 186 DTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
DTL K + A + + K + +S I++ LI G+C++ + D + ++M +
Sbjct: 483 DTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCF 542
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD ++YT + + R L+EM +G P++ T +++ +L A Q+ +A +
Sbjct: 543 PDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTL 602
Query: 305 YEKMKSDDCLTDTSFYSSL 323
+++M + D YS+L
Sbjct: 603 FKEMIAKGFNPDMQTYSAL 621
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 104/258 (40%), Gaps = 26/258 (10%)
Query: 182 SVLMDTLV----KRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
+V DTLV K + A VF + + + + LIH C+ A++ +
Sbjct: 161 AVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLH 220
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M H + D +Y + +CR +V ++ + GC S + ++ +
Sbjct: 221 HMTAHACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCG 280
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFI-----LSKAVRF-------------LIYNT 338
++ EA +++E + + + D Y+ LI + L +A+ Y+
Sbjct: 281 RLAEATQLFESTMTKESVPDVFTYNLLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSY 340
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
++ + AL++ +++ C PD + L C K+ D L L+ +M
Sbjct: 341 LMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVY-NVLISCLGKQGKVDE--ALELLEDMN 397
Query: 399 SKGIVPQESTHKMLAEEL 416
KGI+P T+ ++ + L
Sbjct: 398 RKGIMPDCRTYNIVIDVL 415
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 25/189 (13%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
K + + G D + T ++ C+ + L E+++KG S +TCT + A +A
Sbjct: 7 KHLLKAGLPVDAHTATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQAFGRA 66
Query: 296 KQIYEALKVYEKMKSDD-CLTDTSFYSSLIFILSKAVR--------------------FL 334
+ A+ + + M+ + C DT +++ + L + R +
Sbjct: 67 GDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVV 126
Query: 335 IYNTMISSACVRSEEGNALKLRQKI-EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
YNT+I+ C + AL + +++ +E SCKP+ + + C R D + V
Sbjct: 127 AYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVF-- 184
Query: 394 MREMLSKGI 402
+EML G+
Sbjct: 185 -QEMLGAGL 192
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 3/151 (1%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKA 234
DT A + M L + V A +F ++ + + ++ LI G+CK D A
Sbjct: 88 DTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDM 147
Query: 235 MKEMFQHG-FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
+ + Q G P+ VS+ + C+ +EM G K V C ++H
Sbjct: 148 FRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTC 207
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ + +A ++ M + C D Y L+
Sbjct: 208 RLGMLRQARRLLHHMTAHACARDAFTYGILV 238
>gi|147865347|emb|CAN84084.1| hypothetical protein VITISV_018999 [Vitis vinifera]
Length = 561
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 129/315 (40%), Gaps = 36/315 (11%)
Query: 47 KFFDTQSPDEDF---VIPSLASWVESLKLNEQSRISSHALSEDHETDV------DKVSEI 97
K F SP E + S E L+ R+ A E T+V D VSE+
Sbjct: 79 KPFTENSPKEQLKTRAVDGFLSPGEKLRGVFIQRLRGKAAIELALTNVGIDLTIDIVSEV 138
Query: 98 LRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE-- 155
+ + EA+ F F WA Q +TYN +++ALG+ K ++K+
Sbjct: 139 XNR----GNLGGEAMVXF-FNWAVKQPTIPKDVDTYNVIIKALGRRKFIEFXVXVLKDMH 193
Query: 156 IDELSNGYVSLA-AMSTVMR-------------------RLDTRAMSVLMDTLVKRNSVA 195
I +S Y +L+ M + ++ + DT +++VL+ L +R+ V
Sbjct: 194 IQGISPNYETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCDTESLNVLLQCLCQRSHVG 253
Query: 196 HAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255
A F K I + ++++I GW K K ++ +K M GFSP+ ++++ IE
Sbjct: 254 AANLFFNAMKGGIPFNCMTYNIIIGGWSKYGKIGEMERCLKAMVADGFSPNCLTFSHLIE 313
Query: 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315
R M+E GC P+ ++ + E LK Y M S +C
Sbjct: 314 GLGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRDFDECLKYYNFMVSSNCDP 373
Query: 316 DTSFYSSLIFILSKA 330
+ Y+ LI KA
Sbjct: 374 NMDTYTKLIVAFLKA 388
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 26/209 (12%)
Query: 227 KSDYAQKAMKEMF-----QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
+ + +AM F Q D +Y I+ R K LK+M +G P+
Sbjct: 141 RGNLGGEAMVXFFNWAVKQPTIPKDVDTYNVIIKALGRRKFIEFXVXVLKDMHIQGISPN 200
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------------ 329
T +IVM + KA+Q+ +A++++ ++ DT + L+ L +
Sbjct: 201 YETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCDTESLNVLLQCLCQRSHVGAANLFFN 260
Query: 330 ----AVRF--LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+ F + YN +I + G + + + D P+C T + ++ R
Sbjct: 261 AMKGGIPFNCMTYNIIIGGWSKYGKIGEMERCLKAMVADGFSPNCLTFSHLIEGLGRAGR 320
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ D + V + M E G VP + L
Sbjct: 321 IDDAVEVFHHMEE---TGCVPNACVYNAL 346
>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
Length = 728
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/359 (21%), Positives = 148/359 (41%), Gaps = 36/359 (10%)
Query: 114 CFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWE----------LVKEIDELSNGY 163
C + + G+ H + + A VE KK G + + L K+ D L+ GY
Sbjct: 281 CNSYCFNAVIHGFCHDGQVHKA-VEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLT-GY 338
Query: 164 VSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGW 222
L M+ + + S L+ L + V A+++F + KD ++ +++HG
Sbjct: 339 YMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGC 398
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
C+ + +M H F PD +Y+ I YCR + ++ + M G P+V
Sbjct: 399 CQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNV 458
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR---------- 332
+TCTI++H I EA +K++ + + Y +I L K +
Sbjct: 459 VTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGIFAD 518
Query: 333 ---------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
++Y+ +I + A +L K+ ++ KP+ T+ + CH +
Sbjct: 519 MIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDK 578
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTH-KMLAEELEKKSLGNAKERIDELLTHATEQRTF 441
+ + V+ L + M+ +G+ P + ++A ++ ++ A E E+ T +F
Sbjct: 579 LPE---VMTLFKHMIGEGLTPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSF 634
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 20/235 (8%)
Query: 115 FCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR 174
F F Q G + TY ++ L K K +W + D + GYV
Sbjct: 478 FLFLDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGIFA--DMIKRGYVP--------- 526
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV--LIHGWCKTRKSDYAQ 232
DT S+++D VK + A++++ K D IF LI+G C K
Sbjct: 527 --DTVLYSIIIDGFVKALDLQEAFRLYYKMVD-EGTKPNIFTYTSLINGLCHDDKLPEVM 583
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
K M G +PD + YT I YC+ + + +EM+ +G T ++
Sbjct: 584 TLFKHMIGEGLTPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGF 643
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF----ILSKAVRFLIYNTMISSA 343
K + A E+M + Y+ LI I + ++YN+M+ +
Sbjct: 644 SKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIIGYFKIGDEKKAMVMYNSMLQAG 698
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 88/216 (40%), Gaps = 32/216 (14%)
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
AQ+ + EM G P+ +Y ++ CR K + L+ + ++G + V+H
Sbjct: 232 AQELLSEMEVEGVRPNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIH 291
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAVR----- 332
Q+++A++V++ MK + D YS L+ ++L + R
Sbjct: 292 GFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITP 351
Query: 333 -FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+ Y++++ C A +L +++++ K D ++ L CC ++ +
Sbjct: 352 NLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLE---ICY 408
Query: 392 NLMREMLSKGIVPQEST----------HKMLAEELE 417
+L +M+ VP H+ L E LE
Sbjct: 409 DLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALE 444
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 20/174 (11%)
Query: 134 NAMVEALGKSKKFGLMWELVKE--------IDELSNGYV---SLAAMSTVMRRLDTRAMS 182
+ V+AL + F L +++V E L NG L + T+ + + ++
Sbjct: 536 DGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLT 595
Query: 183 ---VLMDTLV----KRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
+L +L+ KR+++ A ++F + + + +S S ++ LI G+ K D AQ
Sbjct: 596 PDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMDGAQLF 655
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV-ITCTI 287
M+EM G +P V+YT I Y + D +K M + G P ++C +
Sbjct: 656 MEEMMNKGLTPTVVTYTDLIIGYFKIGDEKKAMVMYNSMLQAGIAPDAKLSCIL 709
>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
Length = 595
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 16/192 (8%)
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
K L ++ +++LI G+C+ +K A + ++EM G PD +Y + C+ DF
Sbjct: 375 KAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFS 434
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
VD L M + GC+PSV+T ++H KA + EAL+++ M +T
Sbjct: 435 AVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPNT------- 487
Query: 325 FILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
+IYNT+I C E A+KL ++ E + + T+ LK KK
Sbjct: 488 ---------VIYNTLIDFLCKSREVDVAIKLFDEMREKNVPANVTTYNALLKGLQDKKMA 538
Query: 385 KDGMLVLNLMRE 396
+ +++ MRE
Sbjct: 539 EKAFELMDRMRE 550
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 87/412 (21%), Positives = 161/412 (39%), Gaps = 66/412 (16%)
Query: 61 PSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWA 120
P LAS + +L + +L+ H S R R P P ++ + F+
Sbjct: 59 PGLASELYALIAEPSHAFTPASLASLH-------SLAARHRIPPPSALLLSKLVRRFSSP 111
Query: 121 KTQTGYMH--------TPET--YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMS 170
G++ P+ +N+++ ALG++ M EL + + S
Sbjct: 112 AEAAGFLRDSLASGAPAPDISIFNSLLTALGRAGNLRGMTELFTSMRDAS---------- 161
Query: 171 TVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-----CISLSSQIFDVLIHGWCKT 225
+ D +L++ L K V A KV + C ++ I + ++ G CK
Sbjct: 162 ---VKPDVVTYGILLNGLCKSGHVGDALKVLDRMSSPGSDVCPDIA--ILNTVVDGLCKI 216
Query: 226 RKSDYAQKAMKEMFQH--GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
+ A + E +H G +P+ V+Y C + +CR D + M+++G P+VI
Sbjct: 217 GRLQQAIIFVDERMRHVHGCAPNAVTYNCLADAFCRVGDIGMACKIVARMEKEGVAPNVI 276
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKS--DDCLTDTSFYSSL--IFILSKAVRF------ 333
T ++ L + ++ AL+ + + ++ + + YS+L F+ V
Sbjct: 277 TMNTIIGGLCRVGRVGAALEFFREKRTVWPEARGNAVTYSTLASAFLHCNNVDMAMELFH 336
Query: 334 -----------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
++Y TMIS +A +++ K D + + + C KK
Sbjct: 337 EMADHGHRPDAVMYFTMISGLTQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKK 396
Query: 383 RMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTH 434
++ + L+ EM G+ P T+ L L K +A +DELL H
Sbjct: 397 KLHE---AYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSA---VDELLGH 442
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 21/203 (10%)
Query: 116 CFTWAKTQ-TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR 174
C T A + G+ + YN ++ + KK +EL++E M V
Sbjct: 367 CTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEE-------------MKGVGL 413
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQK 233
+ D + L+ L K + ++ D S F L+HG+CK K+D A +
Sbjct: 414 QPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALR 473
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK---EMQEKGCKPSVITCTIVMH 290
+ M + P+ V Y I+ C+ R+VD +K EM+EK +V T ++
Sbjct: 474 IFRSMDEARIQPNTVIYNTLIDFLCKS---REVDVAIKLFDEMREKNVPANVTTYNALLK 530
Query: 291 ALEKAKQIYEALKVYEKMKSDDC 313
L+ K +A ++ ++M+ + C
Sbjct: 531 GLQDKKMAEKAFELMDRMREERC 553
>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
Length = 581
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 133/304 (43%), Gaps = 42/304 (13%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP+ TY+ +V+A K+ + V E EL +G S V+ + ++D
Sbjct: 290 TPDVITYSVLVDAFCKASR-------VDEALELLHGMASRGCTPNVV------TFNSIID 336
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L K + A+++ L+ + + + ++ F++LI G CK + A +EM P
Sbjct: 337 GLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQP 396
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D +++ I+ C+ L M G P+V+T +++H L K+ +I E +
Sbjct: 397 DVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFL 456
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVR 346
E+M S C+ ++ Y SL++ L +A R + YN ++
Sbjct: 457 EEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKS 516
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV--LNLMREMLSKGIVP 404
+ A+ + +++ +PD T A C + G L + L+R +L+KG++P
Sbjct: 517 GKTEQAITVLEEMVGKGHQPDSFTFAA-----CFGGLHRSGNLAGTMELLRVVLAKGMLP 571
Query: 405 QEST 408
+T
Sbjct: 572 DATT 575
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 110/243 (45%), Gaps = 27/243 (11%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLK--FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
++++ +L + A A ++F +D ++ + ++ +I+G CK+ + + +E+
Sbjct: 49 NIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELV 108
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ G PD V+Y I+ C+ D + M +GC P+V+T +++++ L K +I
Sbjct: 109 KRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRID 168
Query: 300 EALKVYEKM--KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
EA ++ ++M KS D L + + YN+ + C +S A +L +
Sbjct: 169 EARELIQEMTRKSCDVLPN----------------IITYNSFLDGLCKQSMTAEACELMR 212
Query: 358 KIEEDSCK--PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ + S + PD T + + C + + +M++ G VP T+ L
Sbjct: 213 SLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEA-----CNDDMIAGGYVPNVVTYNALVNG 267
Query: 416 LEK 418
L K
Sbjct: 268 LCK 270
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 122/293 (41%), Gaps = 39/293 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN+ ++ L K EL++ L +G + ++ DT S L+D L K
Sbjct: 190 TYNSFLDGLCKQSMTAEACELMRS---LRDGSLRVSP--------DTVTFSTLIDGLCKC 238
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
A + + + ++ L++G CK K + A ++ M G +PD ++Y+
Sbjct: 239 GQTDEACNDDMIAGGYVP-NVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYS 297
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE----ALKVYEK 307
++ +C+ + L M +GC P+V+T ++ L K+ + E AL+VY +
Sbjct: 298 VLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNR 357
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
M D +T +N +I+ AC A L +++ + +PD
Sbjct: 358 MLVPDKVT--------------------FNILIAGACKAGNFEQASALFEEMVAKNMQPD 397
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
T + C +++ +L+LM + G+ P T+ +L L K
Sbjct: 398 VMTFGALIDGLCKAGQVEAARDILDLMGNL---GVPPNVVTYNVLVHGLCKSG 447
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/113 (19%), Positives = 51/113 (45%)
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
S + L++ C+ ++D A + + ++ G+ PD V+Y ++ + + L+
Sbjct: 468 SMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLE 527
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
EM KG +P T L ++ + +++ + + L D + SS++
Sbjct: 528 EMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSIL 580
>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 418
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 145/342 (42%), Gaps = 65/342 (19%)
Query: 108 VVEALKCFCFT-----WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG 162
V +A++CF T W +T ++E L K + F L+W KEI L G
Sbjct: 82 VRDAIQCFRLTKKHKIWVPF--------DTCRKVLEHLMKLRYFRLVWGFYKEI--LECG 131
Query: 163 Y-VSLAAMSTVMRRL----DTRAMSVLMD---------TLVKRNSVAHAYKVFLKFKDCI 208
Y SL + +M R + R ++ D ++V N++ + Y +
Sbjct: 132 YPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGF 191
Query: 209 SLSSQI-----------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY 257
L S + + VLI+G CK K D A + + EM +G P+GV++T I+ +
Sbjct: 192 RLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGH 251
Query: 258 CREKDFRKVDYTL---KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
C+ KVD + K+M +G P +IT +++ L + + +A + E+M
Sbjct: 252 CKNG---KVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLK 308
Query: 315 TDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
D + Y T+I +C + +LR+++ ++ + D T+
Sbjct: 309 PDK----------------ITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTAL 352
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ C + R D ++REML+ G+ P T+ M+ E
Sbjct: 353 ISGLCREGRAGDAE---KMLREMLTVGLKPDNGTYTMIMNEF 391
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 112/273 (41%), Gaps = 33/273 (12%)
Query: 150 WEL---VKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSVAH 196
W L V + L NGY+ L AM + D SVL++ L K + +
Sbjct: 165 WSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDE 224
Query: 197 AYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255
A ++ + D + + + F LI G CK K D A + K+M GF PD ++Y I
Sbjct: 225 ANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIY 284
Query: 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315
CR D + ++EM KG KP IT T ++ K + ++ ++M ++
Sbjct: 285 GLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRL 344
Query: 316 DTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
D Y++L IS C G+A K+ +++ KPD T+ +
Sbjct: 345 DEVTYTAL----------------ISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIM 388
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
C +K L+REM G VP T
Sbjct: 389 NEFCKTGDVKTAS---KLLREMQRNGPVPGVVT 418
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 18/163 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL--DTRAMS 182
G++ TYN ++ L + G +LV+E+ +M+ L D +
Sbjct: 271 GFLPDLITYNTLIYGLCRRGDLGQARDLVEEM---------------IMKGLKPDKITYT 315
Query: 183 VLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+D K + +++ + ++ I L + LI G C+ ++ A+K ++EM
Sbjct: 316 TLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTV 375
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
G PD +YT + +C+ D + L+EMQ G P V+T
Sbjct: 376 GLKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNGPVPGVVT 418
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/198 (18%), Positives = 83/198 (41%), Gaps = 20/198 (10%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KE+ + G+ P + + +C+E + R + + +PSV++ +M+ +
Sbjct: 125 KEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRL 184
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ E ++ M + D YS L I+ C S+ A ++
Sbjct: 185 GDLDEGFRLKSAMHATGVQPDVYTYSVL----------------INGLCKESKMDEANEM 228
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
++ ++ P+ T + C ++ L + + ++MLS+G +P T+ L
Sbjct: 229 LNEMLDNGLVPNGVTFTTLIDGHCKNGKVD---LAMEIYKQMLSQGFLPDLITYNTLIYG 285
Query: 416 L-EKKSLGNAKERIDELL 432
L + LG A++ ++E++
Sbjct: 286 LCRRGDLGQARDLVEEMI 303
>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
Length = 561
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 138/315 (43%), Gaps = 51/315 (16%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE--------LSNGYV-----------SLAAMSTV 172
TY +++ L K+ K +EL+ E+ + + NG + +L TV
Sbjct: 32 TYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTV 91
Query: 173 MR---RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ------IFDVLIHGWC 223
D ++L+D LVK V A+++F + + SSQ + +I+G C
Sbjct: 92 AGTKCTPDIITFNILVDALVKSGRVEEAFQIF----ESMHTSSQCLPNVVTYTTVINGLC 147
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
K K D A + + M + G P+ ++Y+ +E C+ K L+EM +G +P VI
Sbjct: 148 KDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVI 207
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSA 343
+++ L K++++ EAL++ + M C Y +++ YN+++
Sbjct: 208 MYNTLLNGLCKSRRLDEALELVQLMIRSGC------YPTVV----------TYNSLMELF 251
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C + A +L Q + E C PD + + C R+ D L+++M++ V
Sbjct: 252 CRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQ---ALLKQMVAARCV 308
Query: 404 PQESTHKMLAEELEK 418
P T+ + + L K
Sbjct: 309 PDVITYSTIIDGLCK 323
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/330 (21%), Positives = 141/330 (42%), Gaps = 43/330 (13%)
Query: 117 FTWAKTQTGYMHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR 174
+ KT G TP+ T+N +V+AL KS + +++ + + S ++ +TV+
Sbjct: 85 LGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVI- 143
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQK 233
+ L K + A ++ + + I + VL+ G CK ++D
Sbjct: 144 -----------NGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFT 192
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
++EM + GF PD + Y + C+ + + ++ M GC P+V+T +M
Sbjct: 193 LLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFC 252
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------L 334
++KQ+ A ++ + M C D Y+++I L + R +
Sbjct: 253 RSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVI 312
Query: 335 IYNTMISSACV--RSEEG----NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
Y+T+I C R + A ++ + +++ C P+ T+A ++ C ++ +
Sbjct: 313 TYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQ-- 370
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAEELEK 418
L L+R M+ +VP S+ M+ L K
Sbjct: 371 -ALALLRRMIDSEVVPDLSSFSMVIGSLCK 399
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 106/253 (41%), Gaps = 28/253 (11%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
M+ ++ LV+ A ++F + + C+ + + LIHG CK K D A + + EM
Sbjct: 1 MNCALNLLVRAGQHGQAVQLF-REERCVP-NEFTYGSLIHGLCKAGKLDQAYELLDEMRD 58
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P + I C+ F K + C P +IT I++ AL K+ ++ E
Sbjct: 59 RGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEE 118
Query: 301 ALKVYEKM-KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
A +++E M S CL + + Y T+I+ C + A++L +
Sbjct: 119 AFQIFESMHTSSQCLPNV----------------VTYTTVINGLCKDGKLDRAIELLDLM 162
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
E C P+ T++ ++ C R G L++EM +G P + L L K
Sbjct: 163 NETGCCPNVITYSVLVEGLCKAGRTDKG---FTLLQEMTRRGFQPDVIMYNTLLNGLCK- 218
Query: 420 SLGNAKERIDELL 432
R+DE L
Sbjct: 219 -----SRRLDEAL 226
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/348 (20%), Positives = 142/348 (40%), Gaps = 52/348 (14%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------LSNGYVSLAAMSTVMRRL 176
++G T TYN+++E +SK+ + L++ + E + N +A + R
Sbjct: 234 RSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLD 293
Query: 177 DTRAM----------------SVLMDTLVKRNSVAHAYKV--------FLKFKDCISLSS 212
D +A+ S ++D L K V +K+ +K C ++
Sbjct: 294 DAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPP-NA 352
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
+ V+I G C+ RKS A ++ M PD S++ I C+ D
Sbjct: 353 GTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGM 412
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M E+ CKP+ + ++ L K ++ +A++V+E M SF +
Sbjct: 413 MSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-------SFRPGVA-------- 457
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
YN+++ C A+++ + + C PD ++ ++ C +++
Sbjct: 458 --TYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEE---AYE 512
Query: 393 LMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHATEQR 439
L + + +KG + + +L EL +KK L +A ++L+ +Q+
Sbjct: 513 LFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYKQQ 560
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 123/305 (40%), Gaps = 40/305 (13%)
Query: 113 KCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
K F T+ G+ YN ++ L KS++ ELV+ + S Y ++ ++
Sbjct: 189 KGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIR-SGCYPTVVTYNS- 246
Query: 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYA 231
LM+ + V A+++ + I ++ +I G C+ + D A
Sbjct: 247 -----------LMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDA 295
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR-KVDYTLKE-------MQEKGCKPSVI 283
Q +K+M PD ++Y+ I+ C KD+R D+ L+ M++ GC P+
Sbjct: 296 QALLKQMVAARCVPDVITYSTIIDGLC--KDWRVDADWKLEAACEILEMMKQTGCPPNAG 353
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSA 343
T +V+ L +A++ +AL + +M + + D S +S +I S
Sbjct: 354 TYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFS----------------MVIGSL 397
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C + A K+ + E CKP+ +A + + + V LM E G+
Sbjct: 398 CKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVA 457
Query: 404 PQEST 408
S
Sbjct: 458 TYNSV 462
>gi|356509602|ref|XP_003523536.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Glycine max]
Length = 598
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 124/313 (39%), Gaps = 59/313 (18%)
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMK 236
T +++LM L + + A+++ + L I ++ LIHG C+ + D A+ +K
Sbjct: 176 TYTVNILMRGLCRAGEIDEAFRLLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSLLK 235
Query: 237 EMFQHG-FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
E+ +G F+PD VSYT I YC+ + + EM G P+ T ++ K
Sbjct: 236 EVCLNGEFAPDVVSYTTIISGYCKFSKMEEGNLLFGEMIRSGTAPNTFTFNALIGGFGKL 295
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI---FILSK----------------AVRFLIY 336
+ AL +YEKM C+ D + ++SLI F L + +
Sbjct: 296 GDMASALALYEKMLVQGCVPDVATFTSLINGYFRLGQVHQAMDMWHKMNDKNIGATLYTF 355
Query: 337 NTMISSACVRS--------------------------------EEGN---ALKLRQKIEE 361
+ ++S C + + GN A K+ ++E
Sbjct: 356 SVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEV 415
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ CKPD T + C K RM + + + +ML+ G P E T L L K +
Sbjct: 416 NRCKPDKLTFTILIIGHCMKGRMPEA---IGIFHKMLAVGCAPDEITVNNLRSCLLKAGM 472
Query: 422 GNAKERIDELLTH 434
R+ ++L
Sbjct: 473 PGEAARVKKVLAQ 485
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 14/195 (7%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
++G T+NA++ GK L +++ L G V D +
Sbjct: 275 RSGTAPNTFTFNALIGGFGKLGDMASALALYEKM--LVQGCVP-----------DVATFT 321
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L++ + V A ++ K D I + F VL+ G C + A+ ++ + +
Sbjct: 322 SLINGYFRLGQVHQAMDMWHKMNDKNIGATLYTFSVLVSGLCNNNRLHKARDILRLLNES 381
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
P Y I+ YC+ + + + + EM+ CKP +T TI++ ++ EA
Sbjct: 382 DIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEA 441
Query: 302 LKVYEKMKSDDCLTD 316
+ ++ KM + C D
Sbjct: 442 IGIFHKMLAVGCAPD 456
>gi|226494779|ref|NP_001147294.1| transferase, transferring glycosyl groups [Zea mays]
gi|195609598|gb|ACG26629.1| transferase, transferring glycosyl groups [Zea mays]
gi|414866930|tpg|DAA45487.1| TPA: hypothetical protein ZEAMMB73_715808 [Zea mays]
Length = 546
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 109/265 (41%), Gaps = 29/265 (10%)
Query: 188 LVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
L +R A +VF + K + + +IHG C+ R AQ+ EM G +P+
Sbjct: 254 LFRRRMGGEALRVFREIKQRGYDIDGVTYTTVIHGLCEMRLIGVAQQMWDEMVGRGIAPN 313
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
+Y + +YCR D K EM EKG K + ++C I++ ++Y+AL+V+E
Sbjct: 314 EYAYCSLVTYYCRVGDLDKARKVYDEMLEKGFKQTTVSCNILIKGFCVHGRVYDALEVFE 373
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRF----LIYNTMISSA------------CVRSEEG 350
+M D Y +LI L KA + +Y ++SS C E G
Sbjct: 374 EMSIKGIKHDVITYDTLINGLFKAGKLDLAMRMYEWLLSSGLEPTSSTFGRLICAMCENG 433
Query: 351 N---ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
A+ L + + +P T+ + C +GM L ML I PQ
Sbjct: 434 QVHAAVDLIKSMRTKGLEPPVWTNDHIISGFCKINLSDEGMAWLA---GMLKDNIRPQRQ 490
Query: 408 THKMLAEELEKKSLGNAKERIDELL 432
T L E L R+D++L
Sbjct: 491 TFDYLVESLSTSG------RLDDVL 509
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+++ + G P + I + E +F KV TL M GC P + V+H L +
Sbjct: 197 LRDAARRGSPPPADAVADLIGAFAAEGNFGKVSDTLHLMIATGCTPDKVIYQRVIHGLFR 256
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ EAL+V+ ++K D Y+++I
Sbjct: 257 RRMGGEALRVFREIKQRGYDIDGVTYTTVI 286
>gi|297807171|ref|XP_002871469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317306|gb|EFH47728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 602
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 146/339 (43%), Gaps = 60/339 (17%)
Query: 116 CFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE---IDELSNGYVSLAAMSTV 172
F WA+ + G+ +P +++++ +L K+++F + W LV + DE SN VS +
Sbjct: 121 VFKWAEMKPGFTLSPSLFDSVINSLCKAREFEIAWSLVFDRVRSDEGSN-LVSADTFIVL 179
Query: 173 MRRL---------------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205
+RR + + + VL+D L K V A V+L+ +
Sbjct: 180 IRRYARAGMVQQAIRAFEFARSYEPVCKSASELKLLEVLLDALCKEGYVREA-SVYLERR 238
Query: 206 DCISLSS-----QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
+ S+ +IF++L++GW ++RK A+K +EM P V+Y IE YCR
Sbjct: 239 RGMMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRM 298
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
+ L+EM+ + + + ++ L +A ++ EAL + E+
Sbjct: 299 RRVEIAMEILEEMKMAEMELTFMVFNPIIDGLGEAGRLSEALGMMER------------- 345
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
F+ + YN+++ + C + A K+ + + +P T+ K
Sbjct: 346 ---FFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVEPTTSTYNHFFKYFSK 402
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTH----KMLAEE 415
+ ++GM NL +++ G P T+ KML E+
Sbjct: 403 HNKTEEGM---NLYFKLIEAGHSPDRLTYHLILKMLCED 438
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%)
Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
+ K K++ ++ + G SPD ++Y ++ C + KEM+ +G P
Sbjct: 400 FSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAIQVNKEMKNRGIDPD 459
Query: 282 VITCTIVMHALEKAKQIYEALKVYEK 307
++T T++MH L + + EA + ++
Sbjct: 460 LLTTTMLMHLLCRLDMLEEAFEEFDN 485
>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
Length = 561
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 138/315 (43%), Gaps = 51/315 (16%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE--------LSNGYV-----------SLAAMSTV 172
TY +++ L K+ K +EL+ E+ + + NG + +L TV
Sbjct: 32 TYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTV 91
Query: 173 MR---RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ------IFDVLIHGWC 223
D ++L+D LVK V A+++F + + SSQ + +I+G C
Sbjct: 92 AGTKCTPDIITFNILVDALVKSGRVEEAFQIF----ESMHTSSQCLPNVVTYTTVINGLC 147
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
K K D A + + M + G P+ ++Y+ +E C+ K L+EM +G +P VI
Sbjct: 148 KDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVI 207
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSA 343
+++ L K++++ EAL++ + M C Y +++ YN+++
Sbjct: 208 MYNTLLNGLCKSRRLDEALELVQLMIRSGC------YPTVV----------TYNSLMELF 251
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C + A +L Q + E C PD + + C R+ D L+++M++ V
Sbjct: 252 CRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQ---ALLKQMVAARCV 308
Query: 404 PQESTHKMLAEELEK 418
P T+ + + L K
Sbjct: 309 PDVITYSTIIDGLCK 323
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/330 (21%), Positives = 141/330 (42%), Gaps = 43/330 (13%)
Query: 117 FTWAKTQTGYMHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR 174
+ KT G TP+ T+N +V+AL KS + +++ + + S ++ +TV+
Sbjct: 85 LGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVI- 143
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQK 233
+ L K + A ++ + + I + VL+ G CK ++D
Sbjct: 144 -----------NGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFT 192
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
++EM + GF PD + Y + C+ + + ++ M GC P+V+T +M
Sbjct: 193 LLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFC 252
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------L 334
++KQ+ A ++ + M C D Y+++I L + R +
Sbjct: 253 RSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVI 312
Query: 335 IYNTMISSACV--RSEEG----NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
Y+T+I C R + A ++ + +++ C P+ T+A ++ C ++ +
Sbjct: 313 TYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQ-- 370
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAEELEK 418
L L+R M+ +VP S+ M+ L K
Sbjct: 371 -ALALLRRMIDSEVVPDLSSFSMVIGSLCK 399
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 28/253 (11%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
M+ ++ LV+ A ++F + + C+ + + LIHG CK K D A + + EM
Sbjct: 1 MNCALNLLVRAGQHGQAVQLF-REERCVP-NEFTYGSLIHGLCKAGKLDQAYELLDEMRD 58
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P + I+ C+ F K + C P +IT I++ AL K+ ++ E
Sbjct: 59 RGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEE 118
Query: 301 ALKVYEKM-KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
A +++E M S CL + + Y T+I+ C + A++L +
Sbjct: 119 AFQIFESMHTSSQCLPNV----------------VTYTTVINGLCKDGKLDRAIELLDLM 162
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
E C P+ T++ ++ C R G L++EM +G P + L L K
Sbjct: 163 NETGCCPNVITYSVLVEGLCKAGRTDKG---FTLLQEMTRRGFQPDVIMYNTLLNGLCK- 218
Query: 420 SLGNAKERIDELL 432
R+DE L
Sbjct: 219 -----SRRLDEAL 226
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/348 (20%), Positives = 142/348 (40%), Gaps = 52/348 (14%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------LSNGYVSLAAMSTVMRRL 176
++G T TYN+++E +SK+ + L++ + E + N +A + R
Sbjct: 234 RSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLD 293
Query: 177 DTRAM----------------SVLMDTLVKRNSVAHAYKV--------FLKFKDCISLSS 212
D +A+ S ++D L K V +K+ +K C ++
Sbjct: 294 DAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPP-NA 352
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
+ V+I G C+ RKS A ++ M PD S++ I C+ D
Sbjct: 353 GTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGM 412
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M E+ CKP+ + ++ L K ++ +A++V+E M SF +
Sbjct: 413 MSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-------SFRPGVA-------- 457
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
YN+++ C A+++ + + C PD ++ ++ C +++
Sbjct: 458 --TYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEE---AYE 512
Query: 393 LMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHATEQR 439
L + + +KG + + +L EL +KK L +A ++L+ +Q+
Sbjct: 513 LFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYKQQ 560
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 123/305 (40%), Gaps = 40/305 (13%)
Query: 113 KCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
K F T+ G+ YN ++ L KS++ ELV+ + S Y ++ ++
Sbjct: 189 KGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIR-SGCYPTVVTYNS- 246
Query: 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYA 231
LM+ + V A+++ + I ++ +I G C+ + D A
Sbjct: 247 -----------LMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDA 295
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR-KVDYTLKE-------MQEKGCKPSVI 283
Q +K+M PD ++Y+ I+ C KD+R D+ L+ M++ GC P+
Sbjct: 296 QALLKQMVAARCVPDVITYSTIIDGLC--KDWRVDADWKLEAACEILEMMKQTGCPPNAG 353
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSA 343
T +V+ L +A++ +AL + +M + + D S +S +I S
Sbjct: 354 TYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFS----------------MVIGSL 397
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C + A K+ + E CKP+ +A + + + V LM E G+
Sbjct: 398 CKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVA 457
Query: 404 PQEST 408
S
Sbjct: 458 TYNSV 462
>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
Length = 602
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/347 (21%), Positives = 144/347 (41%), Gaps = 43/347 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTR-AMSV 183
G T Y A+ + ++ + G +V + N Y + T+ R R A+SV
Sbjct: 130 GPAATVVAYGALTDGYCRAGRLGDARRVVGGMPVQPNAYTYNPLIHTLCERGQVRDALSV 189
Query: 184 LMDTLVKRNSV--------------AHAYKVFLKFKDCI-----SLSSQIFDVLIHGWCK 224
L D L + + Y+ ++ D + + ++ ++VL+ G C
Sbjct: 190 LDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCG 249
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
D A + ++ + HG P V+Y ++ C + + D + EM + C P+ T
Sbjct: 250 EGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEAT 309
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAV 331
+V+++L + + +A+++ EKM C + Y+++I +LSK
Sbjct: 310 FNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMK 369
Query: 332 RF------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
+ + YNT++ C ++ +A +L + ++ C PD T + C K M
Sbjct: 370 SYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMV 429
Query: 386 DGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDEL 431
D + V ++M KG P T+ + L K + L A E +E+
Sbjct: 430 DAIEVF---KQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEM 473
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 94/203 (46%), Gaps = 20/203 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+V+I+ C+ A + +++M +HG + + V+Y I C +++ L +M+
Sbjct: 310 FNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMK 369
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
GCKP ++T ++ L A Q +A ++ + M + CL D +
Sbjct: 370 SYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDN----------------V 413
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+NT+I C + +A+++ +++ + C P+ T++ + ++ L L
Sbjct: 414 TFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQ---ALELF 470
Query: 395 REMLSKGIVPQESTHKMLAEELE 417
EM KG P + +++LAE L
Sbjct: 471 NEMGHKGFNP-DKIYQLLAECLN 492
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 18/171 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L+ G C + A++ M M Q+G PD V++ I C++ K+M
Sbjct: 380 YNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMP 439
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD------------DCLTDTSFYSS 322
+KGC P+ IT + ++ L KA ++ +AL+++ +M +CL D
Sbjct: 440 DKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEE 499
Query: 323 LIFILSK------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
I + K + ++YN ++ C + A+ + + C PD
Sbjct: 500 AIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPD 550
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 15/194 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +++ L + ++ EL+ + + NG + D + L+ L ++
Sbjct: 379 TYNTLLKGLCSAAQWVDAEELMDNMTQ--NGCLP-----------DNVTFNTLIGFLCQK 425
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A +VF + D + +S + +I G K K D A + EM GF+PD + Y
Sbjct: 426 GLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKI-Y 484
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
E + + T++++Q+ G P + ++ L + + A+ + M S
Sbjct: 485 QLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVS 544
Query: 311 DDCLTDTSFYSSLI 324
C+ D Y LI
Sbjct: 545 SGCMPDDLTYVILI 558
>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 641
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 105/217 (48%), Gaps = 19/217 (8%)
Query: 204 FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263
F++ L F++L+ +C+ D + +++M +HG PD ++YT I +C+E
Sbjct: 345 FQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLV 404
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+ LK M GCKP+ I+ TIV+ L +A++ +A ++ M CL +
Sbjct: 405 DEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNP------ 458
Query: 324 IFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+ +NT+I+ C + A++L +++ + C PD +++ + +
Sbjct: 459 ----------VTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 508
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
++ + +LN+ M++KGI P + +A L ++
Sbjct: 509 TEEALELLNV---MINKGITPNTIIYSSMASALSREG 542
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 90/215 (41%), Gaps = 20/215 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D + +++ K V A + C + I + +++ G C+ + AQ+ +
Sbjct: 387 DVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELI 446
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M Q G P+ V++ I C++ + LK+M GC P +I+ + V+ L KA
Sbjct: 447 SHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKA 506
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIY 336
+ EAL++ M + +T YSS+ LS+ R +Y
Sbjct: 507 GKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALY 566
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
N +ISS C R E A+ + + C P+ T+
Sbjct: 567 NAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTY 601
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 94/226 (41%), Gaps = 22/226 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ LI C+ + +A+ +M +HG +PD Y I+ C++ + L M
Sbjct: 251 FNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMP 310
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILS 328
G KP+V+ V+ L A++ EA + +M +DC D ++ L+ ++
Sbjct: 311 SYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVD 370
Query: 329 KAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ + L Y T+I+ C A+ L + + CKP+ ++ L
Sbjct: 371 RVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVL 430
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
K C +R D L+ M+ +G +P T L + KK L
Sbjct: 431 KGLCRAERWVDAQ---ELISHMIQQGCLPNPVTFNTLINFMCKKGL 473
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 122/300 (40%), Gaps = 43/300 (14%)
Query: 147 GLMWELVKEIDELS-NGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205
GL+ + + +DE+ G + M V+ R + V+ V HA L
Sbjct: 122 GLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGG--FRSAVRALQVLHAKGCTLDSG 179
Query: 206 DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
+C ++++ C+ D + ++++ G PD VSY ++ C K +
Sbjct: 180 NC--------NLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDD 231
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKA---KQIYEALKVYEKMKSDDCLTDTSFYSS 322
V+ + EM GC P+V T ++ L + +Q++EAL +M C D Y++
Sbjct: 232 VEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALS---QMPEHGCTPDLRMYAT 288
Query: 323 LI-------------FILSKAVRF------LIYNTMISSACVRSEEGNALKLRQKIEEDS 363
+I ILS+ + + YNT++ C A L ++ ++
Sbjct: 289 IIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQED 348
Query: 364 CKPDCETHARSLKMCCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
C D T + C ++G++ V+ L+ +ML G +P T+ + K+ L
Sbjct: 349 CPLDDVTFNILVDFFC-----QNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGL 403
>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
Length = 768
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 25/223 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ LI G+CK K D A + ++ M+ +G +PD ++Y + C+ ++V+ T +EM
Sbjct: 458 FNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMI 517
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
KGC+P+ IT I++ K Q+ EA V +M D + D AV F
Sbjct: 518 LKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPD-------------AVSF- 563
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
NT+I C + A L QK++E +T + K M+ + +
Sbjct: 564 --NTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQ---MAEKIF 618
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATE 437
EM+SKG P T+++L + L K + +D H E
Sbjct: 619 GEMISKGYKPDLYTYRILVDGLCKAA------NVDRAYAHLAE 655
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 108/263 (41%), Gaps = 25/263 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D + LM L K + V A + + + CI ++ +I G+CK+ A +
Sbjct: 279 DVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIP-DDFTYNTIIDGYCKSGMLQEATEL 337
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+K+ GF PD V+Y I C E D + E Q K KP ++ ++ L +
Sbjct: 338 LKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCR 397
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAV------RFLI 335
I AL+V +M + C D Y+ +I +++ A+
Sbjct: 398 QGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFT 457
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
+NT+I C R + +AL+L +++ PD T+ L C + K+ V
Sbjct: 458 FNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKE---VNETFE 514
Query: 396 EMLSKGIVPQESTHKMLAEELEK 418
EM+ KG P T+ +L E K
Sbjct: 515 EMILKGCRPNAITYNILIENFCK 537
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/280 (19%), Positives = 119/280 (42%), Gaps = 25/280 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + ++ L ++ V + + K K +S + ++ I G C+ + + A +
Sbjct: 210 DVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALV 269
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ M + +PD V+Y + C++ ++ L M +GC P T ++ K+
Sbjct: 270 ERMGAY-VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKS 328
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL-----------------SKAVR--FLIY 336
+ EA ++ + + D Y SLI L +K ++ ++Y
Sbjct: 329 GMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVY 388
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N+++ C + +AL++ ++ E+ C PD T+ + C + D +V+N +
Sbjct: 389 NSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMN---D 445
Query: 397 MLSKGIVPQESTHKMLAEELEKK-SLGNAKERIDELLTHA 435
+ KG +P T L + K+ L +A + ++ + T+
Sbjct: 446 AIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYG 485
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN+++ L K+ K KE++E + M R + ++L++ K
Sbjct: 492 TYNSVLNGLCKAGK-------AKEVNE------TFEEMILKGCRPNAITYNILIENFCKI 538
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
N + A V ++ +D + + F+ LIHG+C+ D A +++ + G+S ++
Sbjct: 539 NQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTF 598
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I Y + + + + EM KG KP + T I++ L KA + A +M S
Sbjct: 599 NILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMIS 658
Query: 311 DDCLTDTSFYSSLIFILS 328
+ + + ++ +L+
Sbjct: 659 KGFVPSMATFGRMLNLLA 676
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 75/178 (42%), Gaps = 14/178 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++E K + +++E S V + V D + + L+ +
Sbjct: 527 TYNILIENFCK----------INQLEEASGVIVRMCQDGLVP---DAVSFNTLIHGFCRN 573
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ AY +F K + S ++ F++LI + A+K EM G+ PD +Y
Sbjct: 574 GDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTY 633
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
++ C+ + + L EM KG PS+ T +++ L ++ EA+ + M
Sbjct: 634 RILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIM 691
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/231 (17%), Positives = 90/231 (38%), Gaps = 25/231 (10%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ ++ ++ D A K M G +PD ++T ++ +C L
Sbjct: 105 AAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRLL 164
Query: 271 KEMQEKGC--KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS 328
+ + E+GC KP+ CT+V L Y A ++++M D D + +++++ L
Sbjct: 165 RSLSERGCDAKPAAY-CTVV-RGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALC 222
Query: 329 KAVRFLIYNTMISSACVRSEEGN---------ALKLRQKIEEDSC---------KPDCET 370
+ + +++ R N L ++EE PD T
Sbjct: 223 QKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAYVAPDVVT 282
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ ++ C ++++ L M+++G +P + T+ + + K +
Sbjct: 283 YNTLMRGLCKDSKVQEAAQYLG---RMMNQGCIPDDFTYNTIIDGYCKSGM 330
>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 775
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 115/273 (42%), Gaps = 26/273 (9%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
++LMD K+ + +A+ +F + KD I + ++I G CK +S + +
Sbjct: 440 FTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFV 499
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
GF P + Y I+ + +E + +EM E G PS +T T ++ K I
Sbjct: 500 SQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNID 559
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSK--------------------AVRFLIYNTM 339
ALK+ MK D Y +LI K RF IYN+M
Sbjct: 560 LALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRF-IYNSM 618
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I+ + A+ L +K+ + D +T+ + R+ + ++ EMLS
Sbjct: 619 ITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRL---LYASDIHTEMLS 675
Query: 400 KGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
KGI+P + H +L L K NA++ ++++
Sbjct: 676 KGILPDDRAHTVLINGLCNKGQFENARKILEDM 708
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 118/279 (42%), Gaps = 33/279 (11%)
Query: 158 ELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFD 216
+L N +VS + T M + ++D +K ++ A V+ + + I+ S+ +
Sbjct: 493 DLFNKFVSQGFVPTCM------PYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYT 546
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
LI G+CK D A K + +M + G D +Y I+ +C+ +D + L E++
Sbjct: 547 SLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGA 606
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-- 334
G P+ ++ + + EA+ +Y+KM ++ D Y+SLI L K+ R L
Sbjct: 607 GLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYA 666
Query: 335 -----------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
+ +I+ C + + NA K+ + + + P + +
Sbjct: 667 SDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLI-- 724
Query: 378 CCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLAE 414
K+G L L EML +G+VP T+ +L
Sbjct: 725 ---AGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVN 760
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 135/331 (40%), Gaps = 38/331 (11%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+++G + TY+ +++ K+ +E E M T R ++
Sbjct: 290 SESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSE-------------MKTKGIRSSVYSL 336
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+ +++ +K S +A+ +F + + F+ L+ CK K + A E+
Sbjct: 337 NSILEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAK 396
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G SP+ VSY I +CR+ + KEM + G P+ +T TI+M K I A
Sbjct: 397 GISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENA 456
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL----IYNTMISSACVRS---------- 347
++ +MK + L + +I L KA R ++N +S V +
Sbjct: 457 FSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDG 516
Query: 348 --EEGNALKLRQKIEEDSCK----PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
+EGN + L + + C+ P T+ + C + L L L+ +M KG
Sbjct: 517 FIKEGN-INLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNID---LALKLLNDMKRKG 572
Query: 402 IVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
+ + L + +++ + +A E ++EL
Sbjct: 573 LKMDIKAYGTLIDGFCKRRDMKSAHELLNEL 603
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 21/233 (9%)
Query: 189 VKRNSVAHAYKVFLKFKDCI-SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
VK +VA A ++ +C S++ + L+ G+C A + E+ + G P+
Sbjct: 239 VKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNK 298
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
V+Y+ I+ C+ + K EM+ KG + SV + ++ K + A ++
Sbjct: 299 VTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMF-- 356
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
+D L S +NT++S C + A L ++ P+
Sbjct: 357 ---NDALE------------SGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPN 401
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
++ + C K + V +EML G P T +L + KK
Sbjct: 402 VVSYNNIILGHCRKDNINAACKV---YKEMLDNGFTPNAVTFTILMDGYFKKG 451
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 19/162 (11%)
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G D +Y+ F+ C + + L+EM+ G P T T V+ A K + E
Sbjct: 187 RGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAE 246
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
AL++ + M +C K++ + +++ C++ +AL L +I
Sbjct: 247 ALRLKDDMV--NC--------------GKSMNLAVATSLMKGYCMQGNLRSALVLVNEIS 290
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
E P+ T++ + CC ++ EM +KGI
Sbjct: 291 ESGLVPNKVTYSVLIDGCCKNGNIEK---AFEFYSEMKTKGI 329
>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
Length = 480
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 105/225 (46%), Gaps = 28/225 (12%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++++I G+CK R + A ++EM + G P +Y+ ++ +C+ + K EM
Sbjct: 101 YNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMP 160
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
KGC+P ++ +++ L +A++I+EA +++ M S C D Y+++I
Sbjct: 161 AKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLD 220
Query: 325 ---FILSK------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
F+L + + F+ Y T+I C + A ++ +K+ E C C A S+
Sbjct: 221 EAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCP--CTEPAYSV 278
Query: 376 KM----CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ C +R + + +EM +GI P T+ L E L
Sbjct: 279 LILINGLCKARRPGEAK---EMFQEMRGRGISPTVVTYNTLLEGL 320
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 133/312 (42%), Gaps = 40/312 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
+YN +++ K++ ++E++EL + A S ++ + K
Sbjct: 100 SYNIIIDGYCKARNIEKALAFLREMEELGHPPTP-------------HAYSSIVQSFCKT 146
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+V+ A VF + K C F+VL+ G + RK A++ + M G PD V+
Sbjct: 147 GNVSKAMDVFAEMPAKGC-EPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVT 205
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y I C+ K + + L+ M+++ P+ +T T ++ L K ++ +A +V+EKM
Sbjct: 206 YNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMA 265
Query: 310 SDDCLTDTSFYSSLIFI--LSKAVR-------------------FLIYNTMISSACVRSE 348
C YS LI I L KA R + YNT++ ++
Sbjct: 266 EGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAK 325
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+A++L + + P+ T+ + C ++++ +L+ MR+ KG VP
Sbjct: 326 LQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRD---KGFVPSLKI 382
Query: 409 HKMLAEELEKKS 420
++L L +
Sbjct: 383 WEVLLSRLARAG 394
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 59/224 (26%)
Query: 132 TYNAMVEALGKSKKFG---LMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL 188
TYN M+ L K KK + E +K+ +++S +V+ + L+D L
Sbjct: 205 TYNTMIAGLCKWKKLDEAVFLLERMKQ-EDVSPTFVT---------------YTTLIDHL 248
Query: 189 VKRNSVAHAYKVFLKFKD----CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
K + AY+VF K + C + + +LI+G CK R+ A++ +EM G S
Sbjct: 249 CKFARLQQAYEVFEKMAEGPCPCTEPAYSVL-ILINGLCKARRPGEAKEMFQEMRGRGIS 307
Query: 245 PDGVSYTCFIE-----------------------------------HYCREKDFRKVDYT 269
P V+Y +E C+ +
Sbjct: 308 PTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKL 367
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
L M++KG PS+ +++ L +A ++ +A ++Y++M +C
Sbjct: 368 LSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINC 411
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 23/205 (11%)
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A+ ++EM GFSPD S+ I + + F++ L M E G P+ I ++
Sbjct: 13 AEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLIS 72
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILSKAVRFL---------- 334
L KA + EA + Y K C + Y+ +I + KA+ FL
Sbjct: 73 CLCKAGMLAEA-ESYLKRMPQHCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPP 131
Query: 335 ---IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
Y++++ S C A+ + ++ C+PD L +++ +
Sbjct: 132 TPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEAR--- 188
Query: 392 NLMREMLSKGIVPQESTHKMLAEEL 416
L R M S+G P T+ + L
Sbjct: 189 ELFRSMNSRGCKPDVVTYNTMIAGL 213
>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 600
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 97/220 (44%), Gaps = 24/220 (10%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ L+HG+CKT + + K +EM G PD V YT I+ CR +K + M
Sbjct: 166 VYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMM 225
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR- 332
E+G +P+V+T ++++++ K + EAL + + M D Y++LI LS +
Sbjct: 226 TERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEM 285
Query: 333 --------------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
+ +N++I C AL++R + E+ C+ +
Sbjct: 286 DEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFN 345
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ ++K M LM EM S G+ P T+ +L
Sbjct: 346 LLIGGLLRVHKVKKAM---ELMDEMASSGLQPDSFTYSIL 382
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 17/198 (8%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQK 233
R + + + LM L A A + +DC + + LI G C D A +
Sbjct: 91 RPNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVE 150
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
+ EM + G P+ V Y+C + YC+ + V +EM +G +P V+ T ++ +L
Sbjct: 151 LLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLC 210
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
+ ++ +A +V D +T+ +++ YN +I+S C AL
Sbjct: 211 RHGKVKKAARVM------DMMTERGLEPNVV----------TYNVLINSMCKEGSVREAL 254
Query: 354 KLRQKIEEDSCKPDCETH 371
LR+ + E +PD T+
Sbjct: 255 DLRKNMSEKGVQPDVVTY 272
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 20/190 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F++LI G + K A + M EM G PD +Y+ I +C+ + + + L EM+
Sbjct: 344 FNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMR 403
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+G +P + ++ A+ + +A ++ +M +C D + YS
Sbjct: 404 HQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDR-NCKLDAAAYS------------- 449
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
TMI A E+ A + + + ++ PD T++ + M + VL
Sbjct: 450 ---TMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVL--- 503
Query: 395 REMLSKGIVP 404
++M + G VP
Sbjct: 504 KQMTASGFVP 513
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 63/148 (42%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ + + + A +F + L + + +IHG K+ + A++ +K+M G
Sbjct: 417 LLKAMCDQGMMGQARDLFNEMDRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGL 476
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD V+Y+ I + + D + LK+M G P V ++ + L+
Sbjct: 477 IPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILE 536
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAV 331
+ +M + D D S+++ L ++
Sbjct: 537 LTREMTAKDVALDPKIISTIVTSLGASI 564
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 78/191 (40%), Gaps = 22/191 (11%)
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P+ +SYT + C ++ + L+ MQ+ G +P V+T ++ L A + A+++
Sbjct: 92 PNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVEL 151
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACV 345
+M + YS L+ K R+ ++Y +I S C
Sbjct: 152 LNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCR 211
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ A ++ + E +P+ T+ + C + +++ L+L + M KG+ P
Sbjct: 212 HGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREA---LDLRKNMSEKGVQPD 268
Query: 406 ESTHKMLAEEL 416
T+ L L
Sbjct: 269 VVTYNTLITGL 279
>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
Length = 667
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 133/330 (40%), Gaps = 51/330 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T++ ++ AL K KF EL E+ L G + +T + ++D K+
Sbjct: 320 TFSVLINALVKEGKFFEAEELYNEM--LPRGIIP-----------NTITYNSMIDGFSKQ 366
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
N + A ++F + K C S F +LI G+C ++ D K + EM + G + ++
Sbjct: 367 NRLDAAERMFYLMATKGC-SPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTIT 425
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL---EKAKQIYEALKVYE 306
YT I +C+ + L+EM G P+V+TC ++ L K K E KV +
Sbjct: 426 YTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQ 485
Query: 307 KMKSD--------DCLTDTSFYSSLIFILSKAVRF-------------------LIYNTM 339
K K D D D Y+ LI L +F + YN++
Sbjct: 486 KSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSV 545
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I C +S A ++ + PD T + C R+ DG L + EM
Sbjct: 546 IDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDG---LEVFCEMGR 602
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERID 429
+GIV T++ L + +GN +D
Sbjct: 603 RGIVANAITYRTLIHGFCQ--VGNINGALD 630
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 112/253 (44%), Gaps = 25/253 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC--ISLSSQIFDVLIHG-WCKTRKSDYAQKAMKEM 238
++D + K A + K ++ I + I+ +I G W R++D AQ EM
Sbjct: 216 GTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTD-AQNLFSEM 274
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
+ G SP+ +Y C I +C + + L+EM E+ P V+T +++++AL K +
Sbjct: 275 QEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKF 334
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK 358
+EA ++Y +M + +T + YN+MI ++ A ++
Sbjct: 335 FEAEELYNEMLPRGIIPNT----------------ITYNSMIDGFSKQNRLDAAERMFYL 378
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
+ C PD T + + C KR+ DGM L+ EM +G+V T+ L +
Sbjct: 379 MATKGCSPDVITFSILIDGYCGAKRVDDGM---KLLHEMSRRGLVANTITYTTLIHGFCQ 435
Query: 419 KSLGNAKERIDEL 431
LGN +D L
Sbjct: 436 --LGNLNAALDLL 446
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 24/197 (12%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F +LI +C K +A ++ + GF P V+++ + C E + + ++
Sbjct: 114 FTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQI- 172
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
CKP+VI T +M+ L + ++ EA+ + ++M D + +
Sbjct: 173 ---CKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQ----------------I 213
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDS-CKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
Y T++ C + +AL L +K+EE S KP+ ++ + R D NL
Sbjct: 214 TYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQ---NL 270
Query: 394 MREMLSKGIVPQESTHK 410
EM KGI P T+
Sbjct: 271 FSEMQEKGISPNLFTYN 287
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 93/220 (42%), Gaps = 20/220 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F L++G C+ + A + M + G P+ ++Y ++ C+ D L++M+
Sbjct: 180 FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME 239
Query: 275 EKG-CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
E KP+V+ + ++ L K + +A ++ +M+ +
Sbjct: 240 EVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEK----------------GISPNL 283
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
YN MI+ C A +L +++ E PD T + + + + + + N
Sbjct: 284 FTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYN- 342
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
EML +GI+P T+ + + K++ +A ER+ L+
Sbjct: 343 --EMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMA 380
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 16/158 (10%)
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
Q +++LI G K A++ +EM G PD ++Y I+ C++ +
Sbjct: 505 QTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDS 564
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M KG P V+T T +++ K ++ + L+V+ +M I++ A+
Sbjct: 565 MGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRG-------------IVANAI- 610
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
Y T+I C AL + Q++ PD T
Sbjct: 611 --TYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTIT 646
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 14/174 (8%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+TYN ++ L KF EL +E+ G V DT + ++D L K
Sbjct: 505 QTYNILICGLINEGKFSEAEELYEEMPH--RGLVP-----------DTITYNSVIDGLCK 551
Query: 191 RNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
++ + A ++F S F LI+G+CK + + EM + G + ++
Sbjct: 552 QSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAIT 611
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
Y I +C+ + +EM G P IT ++ L +++ A++
Sbjct: 612 YRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVQ 665
>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Brachypodium distachyon]
Length = 628
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/347 (21%), Positives = 145/347 (41%), Gaps = 48/347 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA + Y H TY A++ L +++G MW++++E+ V+ +S ++R L
Sbjct: 106 FRWAAKKRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRML 165
Query: 177 D-----TRAMSVLMDTLVKR-NSVAHAYKVFL-------KFKDCISLSSQI--------- 214
++A+++ V++ A AY + +++ L +++
Sbjct: 166 GNAKMISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPD 225
Query: 215 ---FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
+ LI +CK + D A + + EM +G P YT I + + + +
Sbjct: 226 TVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFE 285
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
EM+ + C+P V T T ++ L KA + EA + +M+ + C DT +++I L KA
Sbjct: 286 EMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAG 345
Query: 332 RF-------------------LIYNTMISSAC-VRSEEGNALKLRQKIEEDSCKPDCETH 371
R + YNT+I + +S ++++ P T+
Sbjct: 346 RLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTY 405
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
+ + C R + M+ L+ EM KG P + + L + L K
Sbjct: 406 SILIDGFCKTNRTEKAMM---LLEEMDEKGFPPCPAAYCSLIDALGK 449
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 85/211 (40%), Gaps = 47/211 (22%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G+ P Y ++++ALGK+K++ + EL +E+ E
Sbjct: 430 EKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKE------------------------ 465
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
+C S S++++ V+I K + D A EM + G
Sbjct: 466 -----------------------NCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLG 502
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
+P+ +Y + R + T++ MQE GC P + + I+++ L K + A+
Sbjct: 503 CTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAM 562
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
++ MK D Y++++ +S A F
Sbjct: 563 EMLSNMKQSAIKPDAVSYNTVLGAMSHAGLF 593
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 78/164 (47%), Gaps = 16/164 (9%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS S + +LI G+CKT +++ A ++EM + GF P +Y I+ + K +
Sbjct: 398 ISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAH 457
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+E++E S +++ L KA ++ +A+ ++++M C + Y++L+ L
Sbjct: 458 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGL 517
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
++A M+ AL ++++E C PD ++
Sbjct: 518 ARA-------GMLDE---------ALTTMRRMQEHGCIPDINSY 545
>gi|414875981|tpg|DAA53112.1| TPA: hypothetical protein ZEAMMB73_920038 [Zea mays]
Length = 574
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 146/329 (44%), Gaps = 42/329 (12%)
Query: 96 EILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE 155
+L Y + A+K F Q G TYN++V L + K +LV+E
Sbjct: 265 NVLINGYCKEPNITAAIKVF---QEMRQQGIPANVVTYNSLVSGLCREGKVEDSIKLVEE 321
Query: 156 IDELSNGYVSLAAMSTVMRRLDTRAMSV----LMDTLVKRNSVAHAYKVFLKFKDCISLS 211
++EL + L+ M++V+ + M V +D + +R +
Sbjct: 322 MEELGLACI-LSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVIT------------ 368
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
++ L+ G+ + K A A M G SP+ +Y C I + +D+R V L
Sbjct: 369 ---YNTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVSGLLD 425
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
EM+EKG K V+T +++ AL ++ +A+K+ ++M +
Sbjct: 426 EMKEKGVKADVVTYNVLIGALCCKGEVRKAVKLLDEMVE----------------VGLEP 469
Query: 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+ + YNT+I+ C + + A ++R ++E+ + + T+ LK C +M + +VL
Sbjct: 470 KHVAYNTIINGFCEKGDAQGAHEIRLRMEKRKKRANVVTYNVFLKYFCKMGKMDEANVVL 529
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEKKS 420
N EML KG+VP T++++ + +K
Sbjct: 530 N---EMLEKGLVPNRITYEIINSGMIEKG 555
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 208 ISLSSQIFDVLIHGWCK---TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
++ S ++ LI G+CK K + +KEM Q G SPD V++ I YC+E +
Sbjct: 219 VAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVVTFNVLINGYCKEPNIT 278
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
+EM+++G +V+T ++ L + ++ +++K+ E+M+
Sbjct: 279 AAIKVFQEMRQQGIPANVVTYNSLVSGLCREGKVEDSIKLVEEME 323
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 96/260 (36%), Gaps = 61/260 (23%)
Query: 170 STVMRRLDTRAMSVLMDTLV----KRNSVAHAYKVFL-KFKDCISLSSQIFDV--LIHGW 222
++++R L + ++ D LV + + AY+ FL DC F V L+
Sbjct: 104 ASILRALPASSGPLVADMLVLALARASQPLAAYEAFLLAGADCPRYRPSAFSVNALLAAL 163
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK----------------- 265
+ + D A +A + + SPD ++ I +C+ RK
Sbjct: 164 VRADRVDLADRAFRAALRRRVSPDLFTFNIVISGFCKTGQLRKAGDVAKNISAWGVAPSV 223
Query: 266 ---------------------VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
VD LKEM + G P V+T ++++ K I A+KV
Sbjct: 224 ATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVVTFNVLINGYCKEPNITAAIKV 283
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
+++M+ + + YN+++S C + +++KL +++EE
Sbjct: 284 FQEMRQQGIPANV----------------VTYNSLVSGLCREGKVEDSIKLVEEMEELGL 327
Query: 365 KPDCETHARSLKMCCHKKRM 384
T L C K M
Sbjct: 328 ACILSTMNSVLNGFCKKGMM 347
>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Vitis vinifera]
Length = 755
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/376 (22%), Positives = 148/376 (39%), Gaps = 64/376 (17%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV--MR 174
F WAK + G+ HT E Y +V L ++ + ++KE+ L S + R
Sbjct: 119 FEWAKGRIGFQHTSEAYCILVHILFCARFYSDANAVLKELICLRRVLPSWDVFDLLWATR 178
Query: 175 RLDTRAMSV---LMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDY 230
+ V L L++ + A + FLK + + + + L+H K + D
Sbjct: 179 NVCVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDL 238
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
++K K+M G +Y I++ C+E D +M+E G P ++T ++
Sbjct: 239 SRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLID 298
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------------------- 324
K + E + ++E+MK DC D Y++LI
Sbjct: 299 GHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKP 358
Query: 325 -------FI--------LSKAVRFLI-------------YNTMISSACVRSEEGNALKLR 356
FI L +A++F + Y ++I + C ALKL
Sbjct: 359 NVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLV 418
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++I + K + T+ L C + RMK+ V R ML+ G+ P + T+ L
Sbjct: 419 EEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVF---RAMLNAGVAPNQETYTALVHGF 475
Query: 417 EK-KSLGNAKERIDEL 431
K K + AK+ + E+
Sbjct: 476 IKAKEMEYAKDILKEM 491
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 127/304 (41%), Gaps = 37/304 (12%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP TY ++++A K+ +LV+EI L G +L+ + L+D
Sbjct: 392 TPNEFTYTSLIDANCKAGNLAEALKLVEEI--LQAGI-----------KLNVVTYTALLD 438
Query: 187 TLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L + + A +VF + ++ + + + L+HG+ K ++ +YA+ +KEM + P
Sbjct: 439 GLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKP 498
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D + Y + C E + + E++E G + + T +M A K+ Q EAL +
Sbjct: 499 DLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLL 558
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
E+M D ++ + Y +I C A+ ++ E +
Sbjct: 559 EEM------LDLGLIATEV----------TYCALIDGLCKSGLVQEAMHHFGRMSEIGLQ 602
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAK 425
P+ + + C + + L EML KG++P + + L + K GN +
Sbjct: 603 PNVAVYTALVDGLCKNNCFE---VAKKLFDEMLDKGMMPDKIAYTALIDGNMKH--GNLQ 657
Query: 426 ERID 429
E ++
Sbjct: 658 EALN 661
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 107/239 (44%), Gaps = 30/239 (12%)
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMK 236
+V NS+ + +CI + Q+ ++ LI+ +CK + A + +
Sbjct: 290 IVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLH 349
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM +G P+ V+Y+ FI+ +C+E ++ +M+ P+ T T ++ A KA
Sbjct: 350 EMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAG 409
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL----IYNTMISSACVRSEEG-- 350
+ EALK+ E++ + Y++L+ L + R ++ M+++ ++E
Sbjct: 410 NLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYT 469
Query: 351 -------------NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
A + ++++E KPD + L C++ R+++ L++ ++E
Sbjct: 470 ALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKE 528
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 114/320 (35%), Gaps = 52/320 (16%)
Query: 120 AKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE--------------------- 158
A G ETY A+V K+K+ +++KE+ E
Sbjct: 455 AMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNES 514
Query: 159 -LSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FD 216
L + + + + + LMD K A + + D +++++ +
Sbjct: 515 RLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYC 574
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
LI G CK+ A M + G P+ YT ++ C+ F EM +K
Sbjct: 575 ALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDK 634
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336
G P I T ++ K + EAL + ++M D Y++LI+ LS +
Sbjct: 635 GMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHS------ 688
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCK---PDCETHARSLKMCCHKKRMKDGML--VL 391
G K R ++E K PD + MC KK G + L
Sbjct: 689 -------------GQVQKARNLLDEMIGKGVLPD-----EVVYMCLIKKYYALGKVDEAL 730
Query: 392 NLMREMLSKGIVPQESTHKM 411
L EM +G++ S H +
Sbjct: 731 ELQNEMAKRGMITGLSDHAV 750
>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
Length = 578
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 124/281 (44%), Gaps = 30/281 (10%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G + TYN++++ K G M+ + + E+ +S A++ VL
Sbjct: 221 GLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVT----------FGVL 270
Query: 185 MDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
++ K ++ A A +VF + K I+ S ++ LI G C K + K M+EM G
Sbjct: 271 INGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGL 330
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
SP+ +++ C ++ +C++ + + M E+ +P V+ TI++ + ++ +A+
Sbjct: 331 SPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMA 390
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKA-------------------VRFLIYNTMISSAC 344
V E M + + Y+ LI S++ + YN +I + C
Sbjct: 391 VKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALC 450
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
+ E A+KL ++ E +P+ T+ ++ C K +K
Sbjct: 451 CKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIK 491
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 99/207 (47%), Gaps = 19/207 (9%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I+ +LI G+ + K + A + M + G SP+ +Y C I + R D+R L EM
Sbjct: 371 IYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEM 430
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+EKG + V+T +++ AL ++ +A+K+ ++M +
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSE----------------VGLEPNH 474
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
L YNT+I C + +A ++R ++E+ + + T+ +K C +M + +LN
Sbjct: 475 LTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLN- 533
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKS 420
EML K +VP T++ + E + +K
Sbjct: 534 --EMLDKCLVPNGITYETIKEGMMEKG 558
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 78/214 (36%), Gaps = 54/214 (25%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK----- 265
S+ + L+ G ++ D A+KA + + SPD ++ I CR RK
Sbjct: 155 STSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVA 214
Query: 266 ---------------------------------VDYTLKEMQEKGCKPSVITCTIVMHAL 292
VD LKEM E G P+ +T ++++
Sbjct: 215 KDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGY 274
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA 352
K A++V+E+MK A + YN++IS C +
Sbjct: 275 CKNSNTAAAVRVFEEMKQQGI----------------AASVVTYNSLISGLCSEGKVEEG 318
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
+KL +++E+ P+ T LK C K M D
Sbjct: 319 VKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMAD 352
>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
Length = 684
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 115/243 (47%), Gaps = 27/243 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++L+HG CK + A + + EM + G +P+ V+Y+ + +CR + L +M
Sbjct: 354 YNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMS 413
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF--------- 325
KG + +++AL K ++ EA+++ ++MKS C D Y+++I+
Sbjct: 414 AKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMD 473
Query: 326 --------ILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+L + V + YNT+I + L+L ++ C D ++ +
Sbjct: 474 EAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLI 533
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK-----SLGNAKERIDE 430
K C + + M+ L+ EM++KGI P ++ ML EL K +L +KE +++
Sbjct: 534 KALCKEGNVDRSMM---LLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQ 590
Query: 431 LLT 433
LT
Sbjct: 591 GLT 593
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 129/298 (43%), Gaps = 33/298 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G+ + YN ++ ALGK K LV+E M + + D + +
Sbjct: 416 GFSMNSQGYNGIIYALGKDGKLDEAMRLVQE-------------MKSQGCKPDICTYNTI 462
Query: 185 MDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+ L + + A +F ++ + + ++ LIH + + + EM HG
Sbjct: 463 IYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGC 522
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
D VSY I+ C+E + + L+EM KG KP+ + ++++ L KA ++ +AL+
Sbjct: 523 PLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALE 582
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS 363
+ ++M + D + YNT+I+ C AL L +K+ ++
Sbjct: 583 LSKEMLNQGLTPD----------------IVTYNTLINGLCKVGWTHAALNLLEKLPNEN 626
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
PD T+ + C + + D ++L+ + +S GIVP E T M+ + ++ +
Sbjct: 627 VHPDIVTYNILISWHCKVRLLDDASMLLD---KAVSGGIVPNERTWGMMVQNFVRQPV 681
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 105/270 (38%), Gaps = 20/270 (7%)
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
R+ + ++ TL + + A A ++ + +D + ++ F V C+ ++ A ++
Sbjct: 146 RSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRARDALALLRG 205
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M +HG PD V Y I + + L EM GC V T V+ L
Sbjct: 206 MARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGLGH 265
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA---------------VRFLIYNTMISS 342
+ EA ++ ++M C Y L+ L + V ++ NT+I
Sbjct: 266 VREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNTVIRG 325
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
+ A +L + + C PD T+ + C R + +L+ M E KG
Sbjct: 326 CLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEE---KGC 382
Query: 403 VPQESTHKMLAEELEKKSL-GNAKERIDEL 431
P T+ L + + +A+ +D++
Sbjct: 383 APNIVTYSTLLHSFCRNGMWDDARAMLDQM 412
>gi|359487102|ref|XP_002274044.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
mitochondrial-like [Vitis vinifera]
Length = 390
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 143/313 (45%), Gaps = 39/313 (12%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F W +TQ G+ HT +TYN M++ LGK +F L+W L++ + Y + V +R
Sbjct: 75 FDWVQTQCGFNHTTDTYNGMIDILGKFFEFDLIWVLIQRMKADPVAYPNHVTFRFVFKRY 134
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-------CISLSSQIFDVLIHGWCKTRKSD 229
A + L++ +++ +K +F + C SL S + + + CK+ K
Sbjct: 135 ---AAAHLVEEILRGWFKMGWWKKCREFWEEMDRRGVCKSLYS--YSIYMDIQCKSGKPW 189
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL---KEMQEKGCKPSVITCT 286
A K KEM + G D V+Y I + VD+++ +EM+E GC+P+V+T
Sbjct: 190 RAVKLYKEMKKKGIRLDVVAYNTVIRAIGLSEG---VDFSIRVFREMKEVGCEPNVVTYN 246
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-IYNTMISSAC- 344
++ L + +I EA V+++M+ + Y + K + L ++ MI+S
Sbjct: 247 TIIKLLCENGRIREAYGVFDQMREKGYAPNVITYHCFFGCIEKPKQILRTFDRMINSGVR 306
Query: 345 --------VRSEEGNALKLR------QKIEEDSCKPD-CETHARSLKMCCHKKRMKDGML 389
+ + G LR +K+EE C PD C +A L +K M D L
Sbjct: 307 PRMDTYVMLMKKFGRWGFLRPVFIVWKKMEEQGCSPDACAYNA--LIDALVQKGMVD--L 362
Query: 390 VLNLMREMLSKGI 402
EML+KG+
Sbjct: 363 ARKYEEEMLAKGL 375
>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
Length = 502
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 117/272 (43%), Gaps = 37/272 (13%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G TP T+ M E S + D ++SL V + D + L
Sbjct: 134 GLAFTPRTFPIMFERFAVSHR---------RPDHAVRFFLSLHRSHGVAQ--DLPLFNSL 182
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
+D LVK A + + + ++ L GWC+ + + A +++M + G +
Sbjct: 183 LDALVKSRHAGKAASLVRALERRFPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGIA 242
Query: 245 PDGVSYTCFIEHYCREKDFRKV-DYTLKEMQEKG-----CKPSVITCTIVMHALEKAKQI 298
P +Y ++ + R + D+ L +M+++G CKP V++ T V+H L A Q+
Sbjct: 243 PTKTTYNIILKGFFRSGQLQHAWDFFL-QMKKRGSNDENCKPDVVSYTTVLHGLGVAGQL 301
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AV-------------RFLIYNTM 339
+A KV+++M + C + Y++LI + K AV + Y +
Sbjct: 302 DKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVTYTVL 361
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
I C + A+KL K++ + C+P+ +T+
Sbjct: 362 IRGLCHAGKIDRAMKLLDKMKREGCEPNVQTY 393
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 137/310 (44%), Gaps = 60/310 (19%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDE-----------LSNGYVSLAAMST---VMRRLDT 178
+N++++AL KS+ G LV+ ++ L++G+ + S ++R++
Sbjct: 179 FNSLLDALVKSRHAGKAASLVRALERRFPPDAVTYNTLADGWCRVKDTSRALDILRQMVE 238
Query: 179 RAMS-------VLMDTLVKRNSVAHAYKVFLKFK-----------DCISLSSQIFDVLIH 220
++ +++ + + HA+ FL+ K D +S + ++H
Sbjct: 239 SGIAPTKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDVVS-----YTTVLH 293
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G + D A+K EM + G +P +Y I+ C++ + +M KG P
Sbjct: 294 GLGVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIP 353
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340
+V+T T+++ L A +I A+K+ +KMK + C + Y+ LI L
Sbjct: 354 NVVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYL------------- 400
Query: 341 SSACVRSEEGN---ALKLRQKIEE-DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
EEG+ AL L + + + + C P+ +T+ + +KR +D + ++ E
Sbjct: 401 ------FEEGDIEKALHLFETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVE 454
Query: 397 MLSKGIVPQE 406
M+ +G +P+
Sbjct: 455 MVDRGYLPRR 464
>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
Length = 514
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 98/239 (41%), Gaps = 23/239 (9%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LIHG+C+ + AQ +EM +G SPD V+ + C K K Q+
Sbjct: 237 LIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSK 296
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL--- 334
TC I+++ + K ++ EA ++ + + TD Y+ LI + K FL
Sbjct: 297 MDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAE 356
Query: 335 ----------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
YN+M+ C ++ A ++ + + C PD T + +K
Sbjct: 357 DIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGY 416
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDELLTHAT 436
C R+ DG L L EM +G+V T+ L K L A++ +E+++
Sbjct: 417 CKAGRVDDG---LELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGV 472
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 104/260 (40%), Gaps = 26/260 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D +++ + K A + K + I + I+ ++ CK AQ
Sbjct: 44 DAVTYGTIVNGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIF 103
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM + G P+ ++Y C I+ YC + + L++M E+ P V+T + +++A K
Sbjct: 104 TEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKE 163
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ A ++Y +M + T YSS MI C S +A +
Sbjct: 164 GKVSGAEELYREMLRRNIFPTTITYSS----------------MIDGFCKHSRLEDAKHM 207
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKR--------MKDGMLVLNLMREMLSKGIVPQES 407
+ C PD T + CC KR + + + +L +EM+S G+ P
Sbjct: 208 FDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIV 267
Query: 408 T-HKMLAEELEKKSLGNAKE 426
T + +LA E L A E
Sbjct: 268 TCNTLLAGLCENGKLEKALE 287
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 198 YKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY 257
+KVF K K + L + +++I+G CK K D A + +G D V+Y I +
Sbjct: 289 FKVFQKSK--MDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVF 346
Query: 258 CREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDT 317
+E +F + + EM KG PS +T ++ K ++ EA ++ + M S+ C D
Sbjct: 347 VKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDV 406
Query: 318 SFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQK 358
+S+LI KA R + YN +I C + A + ++
Sbjct: 407 VTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEE 466
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+ PD T L C K ++ G+ +L
Sbjct: 467 MVSSGVCPDTITFRSMLAGLCTKAELQKGLTML 499
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 20/222 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F L++G C+ + A + M + G PD V+Y + C+ D L++M
Sbjct: 13 FTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNMLRKMD 72
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
E K +V+ + ++ L K +A ++ +M + IF L
Sbjct: 73 ESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEM-----------HEKGIF-----PNVL 116
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN MI C + +A +L + + E + PD T + + + ++ L
Sbjct: 117 TYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAE---ELY 173
Query: 395 REMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHA 435
REML + I P T+ + + K S L +AK D +++
Sbjct: 174 REMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKG 215
>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 588
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 133/330 (40%), Gaps = 44/330 (13%)
Query: 115 FCFTWAKTQTGYMHTPE--TYNAMVEALGKSKKFGLMWELV-KEIDE-----------LS 160
F F+ H P+ T+ ++ L K G L K I E L
Sbjct: 123 FAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLI 182
Query: 161 NGYVSLAAMSTVMRRL----------DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCIS 209
NG + S +R L + S L+D+L K V A+ +F + IS
Sbjct: 183 NGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGIS 242
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+ ++ LIHG CK + + M EM PD + ++ C+E +
Sbjct: 243 PNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDV 302
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
+ M +G +P+V+T +M ++ A+KV++ M DC+ +
Sbjct: 303 VDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANV------------ 350
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ YNT+I+ C A+ L +++ P+ T+ + CH R++D
Sbjct: 351 ----ISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDA-- 404
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKK 419
++L EM+++G +P T++ L++ L K
Sbjct: 405 -ISLFHEMVARGQIPDLVTYRTLSDYLCKN 433
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 116/269 (43%), Gaps = 27/269 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ LMD RN V A KVF + KDC++ + ++ LI+G+CK + D A +EM
Sbjct: 319 NALMDGHCLRNEVDVAVKVFDTMVHKDCVA-NVISYNTLINGYCKIQSVDKAMYLFEEMS 377
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ +P+ V+Y I C + EM +G P ++T + L K + +
Sbjct: 378 RQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLD 437
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKA-----VRFLI--------------YNTMI 340
+A+ + + ++ + D Y++++ + +A R L YN MI
Sbjct: 438 KAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMI 497
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKP-DCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
C + A KL ++ ++ C P DC + + R + + + L+ EML+
Sbjct: 498 HGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFL----RNNEALRTIELLEEMLA 553
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERI 428
+G ST +L L L + ++I
Sbjct: 554 RGFSVDVSTTTLLVGMLSDDGLDQSVKQI 582
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/288 (19%), Positives = 117/288 (40%), Gaps = 43/288 (14%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
+N ++ ++ K+K + L +++D D +++++++L N
Sbjct: 73 FNRLLTSIAKTKHHSTLLSLSRQMDSFG-------------IPPDVYTLAIVINSLCHLN 119
Query: 193 SVAHAYKVFLKFKDCISLSSQ----IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
V A+ K + L Q F LI G C K A +M GF P+ V
Sbjct: 120 RVDFAFSALAKI---LKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVV 176
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+Y I C+ + L+ M++ C+P+V+ + ++ +L K +Q+ EA ++ +M
Sbjct: 177 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEM 236
Query: 309 KSDDCLTDTSFYSSLIFILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
++K + + YN++I C E + L ++ + P
Sbjct: 237 ------------------ITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMP 278
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
D T + C + + + V+++ M+ +G+ P T+ L +
Sbjct: 279 DVFTLNTVVDALCKEGMVAEAHDVVDM---MIHRGVEPNVVTYNALMD 323
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 93/222 (41%), Gaps = 20/222 (9%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
++I+ C + D+A A+ ++ + G PD ++T I C E + + +M +
Sbjct: 110 IVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGE 169
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336
G +P+V+T +++ L K A+++ M+ +C + +++
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNV----------------VVF 213
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
+T+I S C + A + ++ P+ T+ + C K V LM E
Sbjct: 214 STLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKH---VTTLMNE 270
Query: 397 MLSKGIVPQESTHKMLAEELEKKSL-GNAKERIDELLTHATE 437
M+ I+P T + + L K+ + A + +D ++ E
Sbjct: 271 MVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVE 312
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 11/180 (6%)
Query: 153 VKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL-- 210
V + L NGY + ++ M + + L V N++ H + +D ISL
Sbjct: 350 VISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFH 409
Query: 211 ----SSQIFDVLIHG-----WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
QI D++ + CK R D A +K + + PD YT ++ CR
Sbjct: 410 EMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAG 469
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
+ + KG +P+V T I++H L K + EA K++ +M + C + Y+
Sbjct: 470 ELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYN 529
>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 418
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 115/271 (42%), Gaps = 31/271 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L + R + D SVL++ L K + +
Sbjct: 164 KWGLRPSVV-SFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKM 222
Query: 195 AHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A+K+F + D + + F LI G CK K D A + K+M GFSPD ++Y
Sbjct: 223 DEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTL 282
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I C++ D + EM KG KP IT T ++ K + A + ++M ++
Sbjct: 283 IYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENI 342
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
D Y++L IS C +A K+ +++ KPD T+
Sbjct: 343 RLDDVSYTAL----------------ISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTI 386
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ C +K G L++EM G VP
Sbjct: 387 VMHEFCKNGDVKMGS---KLLKEMQRDGHVP 414
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 137/335 (40%), Gaps = 47/335 (14%)
Query: 110 EALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAM 169
+A++CF T + Y +T ++E L K K F L+W KEI E SL
Sbjct: 84 DAIECFRLT---RENKYWVPFDTCRKVLEHLMKLKYFKLVWSFYKEILECRYP-ASLYFF 139
Query: 170 STVMRRL----DTRAMSVLMD---------TLVKRNSVAHAYKVFLKFKDCISLSSQI-- 214
+ +M R + R + D ++V N++ + Y + L S +
Sbjct: 140 NILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHA 199
Query: 215 ---------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
+ VLI+G CK K D A K EM G P+GV++T I+ +C+
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDL 259
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
K+M +G P IT +++ L K + +A + ++M D
Sbjct: 260 AMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDK-------- 311
Query: 326 ILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
+ Y T+I +C + A + R+++ +++ + D ++ + C + R
Sbjct: 312 --------ITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSV 363
Query: 386 DGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
D ++REMLS G+ P T+ ++ E K
Sbjct: 364 DAE---KMLREMLSVGLKPDTGTYTIVMHEFCKNG 395
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 67/161 (41%), Gaps = 14/161 (8%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G+ TYN ++ L K +L E MS + D + L
Sbjct: 271 GFSPDXITYNTLIYGLCKKGDLXQAKDLXDE-------------MSMKGLKPDKITYTTL 317
Query: 185 MDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D K + A++ + K+ I L + LI G CK +S A+K ++EM G
Sbjct: 318 IDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGL 377
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
PD +YT + +C+ D + LKEMQ G P VIT
Sbjct: 378 KPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGHVPCVIT 418
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 79/197 (40%), Gaps = 20/197 (10%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KE+ + + + ++ +C+E + R + + G +PSV++ +M+ K
Sbjct: 125 KEILECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKL 184
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ E ++ M + D YS LI + C S+ A KL
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLI----------------NGLCKESKMDEAHKL 228
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
++ + P+ T + C ++ L + + ++MLS+G P T+ L
Sbjct: 229 FDEMLDRGLVPNGVTFTTLIDGHCKNGKLD---LAMEIYKQMLSQGFSPDXITYNTLIYG 285
Query: 416 LEKKS-LGNAKERIDEL 431
L KK L AK+ DE+
Sbjct: 286 LCKKGDLXQAKDLXDEM 302
>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 472
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 140/346 (40%), Gaps = 50/346 (14%)
Query: 108 VVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVS-- 165
V +++ F A+ GY+H ++ MV L + KF +L+ + ++ N VS
Sbjct: 29 VEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAAEDLIVRM-KIENCVVSED 87
Query: 166 -----LAAMSTVMRRLDT----------------RAMSVLMDTLVKRNSVAHAYKVFLKF 204
V R D+ +A ++ LV+ N + A+K +
Sbjct: 88 ILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNM 147
Query: 205 KDCISLSSQI--FDVLIHGWCKTRKS-DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
++ I L + +VLI C+ + D K EM + G PD +Y I CR
Sbjct: 148 RE-IGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFG 206
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
+ EM EK C P+V+T T +++ L +K + EA++ E+MKS + YS
Sbjct: 207 RIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYS 266
Query: 322 SLIFILSKAVRFL-------------------IYNTMISSACVRSEEGNALKLRQKIEED 362
SL+ L K R L Y T+I+ C + A++L ++
Sbjct: 267 SLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQ 326
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
KPD + + + C + ++ N + EM+ GI P T
Sbjct: 327 GLKPDAGLYGKVISGFCAISKFREAA---NFLDEMILGGITPNRLT 369
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 72/194 (37%), Gaps = 27/194 (13%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
S LMD L K A ++F + + C + + LI G CK +K A + + M
Sbjct: 266 SSLMDGLCKDGRSLQAMELFEMMMARGC-RPNMVTYTTLITGLCKEQKIQEAVELLDRMN 324
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI-------VMHAL 292
G PD Y I +C FR+ L EM G P+ +T I V+ L
Sbjct: 325 LQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGL 384
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA 352
A A +Y M+S + SL+ L C + E A
Sbjct: 385 -CANYPSRAFTLYLSMRSRGISVEVETLESLVKCL----------------CKKGEFQKA 427
Query: 353 LKLRQKIEEDSCKP 366
++L +I D C P
Sbjct: 428 VQLVDEIVTDGCIP 441
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 24/224 (10%)
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
+ +G+ D S+ + F+ + + M+ + C S + + +
Sbjct: 43 YANGYVHDQSSFGYMVLRLVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRP 102
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKA----VRFLIY---------------NTM 339
+++L+V+ KMK DC Y +++ IL + + F Y N +
Sbjct: 103 FDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVL 162
Query: 340 ISSACVRSEEGNA-LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
I + C +A LK+ ++ + C PD T+ + C R+ + L EM+
Sbjct: 163 IKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAK---KLFTEMV 219
Query: 399 SKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHATEQRTF 441
K P T+ L L K++ A ++E+ + E F
Sbjct: 220 EKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVF 263
>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 141/357 (39%), Gaps = 74/357 (20%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL 166
+V EAL F + K G TYN++++ L + W KE L N SL
Sbjct: 253 RVNEALDIFSYMKVK---GISPDIFTYNSLIQGLCNFSQ----W---KEASALLNEMRSL 302
Query: 167 AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK------DCISLSS-------- 212
M D +VL+DT+ K V+ A V D ++ SS
Sbjct: 303 NIMP------DIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLR 356
Query: 213 -------QIFD---------------VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
++FD +LI+G+CK ++ D A++ EM G +P+ VSY
Sbjct: 357 SEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSY 416
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I C+ R+ K M G P++ T +I++ K +A +++ M+S
Sbjct: 417 NTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQS 476
Query: 311 DDCLTDTSFYSSLIFILSKA--------------VRFL-----IYNTMISSACVRSEEGN 351
+ Y+ LI + K+ V+ L IY T+I+ C
Sbjct: 477 TYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDE 536
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
AL+ + +EED C PD ++ ++ H KD + L+ EM KG + T
Sbjct: 537 ALEAFRNMEEDGCPPDEISYNVIIRGFLHH---KDESRAVQLIGEMRDKGFIADVGT 590
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 110/266 (41%), Gaps = 27/266 (10%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ----IFDVLIHGWCKTRKSDYAQKAMK 236
+S+L++ V A+ V K I L Q F LI+ CK K A +
Sbjct: 136 LSILINCFSHLQRVDLAFSVLAKI---IKLGLQPTIVTFTTLINWLCKVGKFAQAMELFD 192
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
+M G PD +YT I C+ + LK+M+E GC+P+V+T + ++ + K +
Sbjct: 193 DMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDR 252
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
++ EAL ++ MK D YN++I C S+ A L
Sbjct: 253 RVNEALDIFSYMKVKGISPD----------------IFTYNSLIQGLCNFSQWKEASALL 296
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ + PD T + C + ++ + VL M EM G+ P T+ L
Sbjct: 297 NEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEM---GVEPDVVTYSSLMYGY 353
Query: 417 EKKS-LGNAKERIDELLTHATEQRTF 441
+S + A++ D ++T + F
Sbjct: 354 SLRSEVVEARKLFDAMITKGCKPDVF 379
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/357 (21%), Positives = 136/357 (38%), Gaps = 48/357 (13%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEI------------DELSNGYVSL---AAM 169
G T T+ ++ L K KF EL ++ + NG + AA
Sbjct: 163 GLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAA 222
Query: 170 STVMRRLDTRA-------MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF--DVLIH 220
+ ++++++ S ++D+ K V A +F + +S IF + LI
Sbjct: 223 AGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIF-SYMKVKGISPDIFTYNSLIQ 281
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G C + A + EM PD V++ ++ C+E + LK M E G +P
Sbjct: 282 GLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEP 341
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------- 333
V+T + +M+ ++ EA K+++ M + C D Y+ LI K R
Sbjct: 342 DVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLF 401
Query: 334 ------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
+ YNT+I C A L + + + P+ T++ L C +
Sbjct: 402 NEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQ 461
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK-SLGNAKERIDELLTHATE 437
+ M+ SK P + +L + + K +L +A++ EL +
Sbjct: 462 GYFGKAFRLFRAMQSTYSK---PNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQ 515
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 85/214 (39%), Gaps = 23/214 (10%)
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL-KEMQEKGCKPS 281
C R D A + M P + +T + + + +L K+M+ G P+
Sbjct: 73 CSFRNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPN 132
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------- 333
+ T +I+++ +++ A V K+ +++LI L K +F
Sbjct: 133 IYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFD 192
Query: 334 -----------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
Y T+I+ C E A L +K+EE C+P+ T++ + +
Sbjct: 193 DMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDR 252
Query: 383 RMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
R+ + + + + M+ KGI P T+ L + L
Sbjct: 253 RVNEALDIFSYMK---VKGISPDIFTYNSLIQGL 283
>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/348 (22%), Positives = 142/348 (40%), Gaps = 74/348 (21%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +++ K K G M++ + E+ + ++ ++L+D K
Sbjct: 200 TYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVT----------FNILIDGFCKD 249
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+V+ A KVF + + + + ++ LI+G C K + A +M P+ +++
Sbjct: 250 KNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITH 309
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ +C+ K ++ +M ++G P+V T I++ A K + + +A +Y M
Sbjct: 310 NALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLG 369
Query: 311 DDCLTDTSFYSSLIFIL-----------------------------------------SK 329
D S Y+ LI L K
Sbjct: 370 KGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKK 429
Query: 330 AVRFL-------------IYNTMISSACVRSEEGN---ALKLRQKIEEDSCKPDCETHAR 373
A+R L YNTMI C +EGN AL LR ++E+ + T+
Sbjct: 430 ALRLLDEMCRKGLKPSQLTYNTMIDGYC---KEGNLRAALNLRSQMEKVGRLANVATYNV 486
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+K C K +++D +LN EML KG++P T++++ EE+ +K
Sbjct: 487 LIKGFCKKDKLEDANGLLN---EMLEKGLIPNRMTYEIVTEEMMEKGF 531
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 118/273 (43%), Gaps = 28/273 (10%)
Query: 148 LMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAH---AYKVFLKF 204
L+W K + G+ + S +L + + LM LVK + YK ++
Sbjct: 99 LVWAYAKNL-RTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRR 157
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
+ +L S F+++I+G CK K + A +++M G S + ++Y I+ YC+
Sbjct: 158 RIEPTLIS--FNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIG 215
Query: 265 KV---DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
K+ D LKEM+ G P+ +T I++ K K + A+KV+ +M +
Sbjct: 216 KMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNV---- 271
Query: 322 SLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
+ YN++I+ C + A LR ++ KP+ TH L C
Sbjct: 272 ------------VTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKN 319
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
K +K L +M +GI P +T+ +L +
Sbjct: 320 KMVKQAG---ELFDDMPKQGITPNVTTYNILID 349
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 138/322 (42%), Gaps = 46/322 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI------------DELSNGY----------VSLAAM 169
+YN+++ L + + ELV+E+ + L NG+ V L+ M
Sbjct: 279 SYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEM 338
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKS 228
+ + L++ + K +++ A ++F + + + + + + LI G+C+
Sbjct: 339 VGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLM 398
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+ A K + EM GFSP V+Y + YC ++ L+ M E+G P V++ + V
Sbjct: 399 NEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTV 458
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
+ + +++ +A ++ E+M L DT YSSLI C++ +
Sbjct: 459 IAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLI----------------QGLCLQQK 502
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML--VLNLMREMLSKGIVPQE 406
A L +++ PD T+ + C DG L L L EM+ +G +P
Sbjct: 503 LVEAFDLFREMMRRGLPPDEVTYTSLINAYC-----VDGELSKALRLHDEMVQRGFLPDN 557
Query: 407 STHKMLAEELEKKSLGNAKERI 428
T+ +L L KK+ +R+
Sbjct: 558 VTYSVLINGLNKKARTKVAKRL 579
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 108/242 (44%), Gaps = 20/242 (8%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQK 233
R + R + L+D ++ + AYKV + S S ++ L+HG+C + A
Sbjct: 379 RPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVG 438
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
++ M + G PD VSY+ I +CRE++ K +EM EKG P +T + ++ L
Sbjct: 439 ILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLC 498
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
+++ EA ++ +M D Y+SL I++ CV E AL
Sbjct: 499 LQQKLVEAFDLFREMMRRGLPPDEVTYTSL----------------INAYCVDGELSKAL 542
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
+L ++ + PD T++ + K R K + L+ ++ + VP + T+ L
Sbjct: 543 RLHDEMVQRGFLPDNVTYSVLINGLNKKARTK---VAKRLLLKLFYEESVPDDVTYNTLI 599
Query: 414 EE 415
E
Sbjct: 600 EN 601
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 93/207 (44%), Gaps = 20/207 (9%)
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
R D A++ ++M ++G SP+ +Y I + D K +++M+++G P+V+T
Sbjct: 186 RDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTY 245
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
++ A K K++ EA+ + M + A + YN++I+ C
Sbjct: 246 NTLIDASCKKKKVKEAMALLRAMA----------------VGGVAANLISYNSVINGLCG 289
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ +L +++ PD T+ + C + + G++ L+ EM+ KG+ P
Sbjct: 290 KGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLV---LLSEMVGKGLSPN 346
Query: 406 ESTHKMLAEEL-EKKSLGNAKERIDEL 431
T+ L + + +L A E D++
Sbjct: 347 VVTYTTLINCMCKAGNLSRAVEIFDQM 373
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 106/248 (42%), Gaps = 23/248 (9%)
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
K+ IS + ++ LI CK +K A ++ M G + + +SY I C +
Sbjct: 235 KEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMS 294
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+V ++EM+ KG P +T +++ K +++ L + +M + Y++LI
Sbjct: 295 EVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLI 354
Query: 325 FILSKA--------------VRFL-----IYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
+ KA VR L Y T+I C + A K+ ++
Sbjct: 355 NCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFS 414
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK-MLAEELEKKSLGNA 424
P T+ + C R+++ + ++R M+ +G+ P ++ ++A ++ LG A
Sbjct: 415 PSVVTYNALVHGYCFLGRVQEA---VGILRGMVERGLPPDVVSYSTVIAGFCRERELGKA 471
Query: 425 KERIDELL 432
+ +E++
Sbjct: 472 FQMKEEMV 479
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 70/329 (21%), Positives = 131/329 (39%), Gaps = 74/329 (22%)
Query: 110 EALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI-------DELS-- 160
E K F + G + TY+++++ L +K ++L +E+ DE++
Sbjct: 467 ELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYT 526
Query: 161 ---NGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV 217
N Y +S +R L D +V+R FL D ++ + V
Sbjct: 527 SLINAYCVDGELSKALR---------LHDEMVQRG--------FLP--DNVT-----YSV 562
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV----------- 266
LI+G K ++ A++ + ++F PD V+Y IE+ C +F+ V
Sbjct: 563 LINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIEN-CSNNEFKSVEGLVKGFCMKG 621
Query: 267 -----DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
D K M ++ KP+ +++H + +++A +Y + L +SF
Sbjct: 622 LMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYME------LEHSSFAC 675
Query: 322 SLIFILSKAVRFLIYNTMISSACVRSEEGNAL-KLRQKIEEDSCKPDCETHARSLKMCCH 380
+ +++ + A R + L +L Q I SC+ + A+ L
Sbjct: 676 HTVAVIA-----------LVKALAREGMNDELSRLLQNILR-SCRLNDAKVAKVLVEVNF 723
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTH 409
K+ D VLN++ EM G++P H
Sbjct: 724 KEGNMDA--VLNVLTEMAKDGLLPDGGIH 750
>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
Length = 485
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 113/256 (44%), Gaps = 23/256 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D L+ L + + A VF K + ++ +F +LI CK ++ +
Sbjct: 185 DVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELH 244
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM + G PD V+Y + CR +D + + EM+ G +P +T T ++ K
Sbjct: 245 REMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKE 304
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-------------------IY 336
+++ A+++ + M ++ D Y++LI LSKA R Y
Sbjct: 305 EELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTY 364
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
+I + C + + L+L ++++ KP T+ + C +MK+ ++LN
Sbjct: 365 TMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLN---A 421
Query: 397 MLSKGIVPQESTHKML 412
M++ G+ P + T+ +L
Sbjct: 422 MINIGVSPDDITYNIL 437
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 14/194 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYNA+V L +++ +V E M + R DT + L+D K
Sbjct: 258 TYNAIVNGLCRARDLKSASGIVVE-------------MRSAGLRPDTVTYTTLIDGYCKE 304
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A ++ + + L + LI G K +S A++ + EM + G PD +Y
Sbjct: 305 EELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTY 364
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T I+ +CR+ D + LKEMQ KG KP V+T ++M+ K Q+ A + M +
Sbjct: 365 TMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMIN 424
Query: 311 DDCLTDTSFYSSLI 324
D Y+ L+
Sbjct: 425 IGVSPDDITYNILL 438
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 109/264 (41%), Gaps = 23/264 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ + +VLM LV+ +A A VF + + + + F+ +I G C+ D A+
Sbjct: 115 EAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLH 174
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ M + G +PD +Y I+ CR ++M +G KP+ + TI++ A K
Sbjct: 175 RRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKK 234
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIY 336
L+++ +M+ D Y++++ L +A + Y
Sbjct: 235 GDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTY 294
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
T+I C E A++++Q + + D T+ + R D VL E
Sbjct: 295 TTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLG---E 351
Query: 397 MLSKGIVPQESTHKMLAEELEKKS 420
M+ G+ P +T+ M+ + +K
Sbjct: 352 MMEAGLEPDNTTYTMVIDAFCRKG 375
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/199 (18%), Positives = 78/199 (39%), Gaps = 26/199 (13%)
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
++ G P+ + + R + EMQ +G + +V++ ++ + +A
Sbjct: 106 QLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAG 165
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYN 337
+ A ++ +M D Y +LI L + R +++
Sbjct: 166 DLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFT 225
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK--DGMLVLNLMR 395
+I + C + + L+L +++ E +PD T+ + C + +K G++V
Sbjct: 226 ILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVV----- 280
Query: 396 EMLSKGIVPQESTHKMLAE 414
EM S G+ P T+ L +
Sbjct: 281 EMRSAGLRPDTVTYTTLID 299
>gi|10177952|dbj|BAB11311.1| unnamed protein product [Arabidopsis thaliana]
Length = 680
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 91/419 (21%), Positives = 170/419 (40%), Gaps = 84/419 (20%)
Query: 71 KLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTP 130
KL +S I S +D V+++L + S EA+ F F WA + G
Sbjct: 97 KLKGKSAIQKSLSSLGIGLSIDIVADVLNRGNLSG----EAMVTF-FDWAVREPGVTKDV 151
Query: 131 ETYNAMVEALGKSKKFGLMWELVK---------EIDELSNGYVSLAAMSTVMRRLD---- 177
+Y+ ++ ALG+ K F M +++K +++ L+ S + V R ++
Sbjct: 152 GSYSVILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEE 211
Query: 178 ---------TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS 228
T + + L+ L +R+ V+ A VF K I S ++++I GW K +
Sbjct: 212 SESFGVKCSTESFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEV 271
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIE--------------------------------- 255
+ +K +KEM + GF PD +SY+ IE
Sbjct: 272 EEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAM 331
Query: 256 --HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
++ +DF + + M ++ C+P++ T + ++ L K +++ +AL+++E+M S
Sbjct: 332 ICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGV 391
Query: 314 LTDTSFYSSLIFILSKA----VRFLIYNTMISSACVRSEEGNALKLRQ------------ 357
L T +S + L +IY + C SE L L++
Sbjct: 392 LPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLN 451
Query: 358 ---KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
+++E D E + + C +++ +LV M E + KG P + L+
Sbjct: 452 VWDEMQESGYPSDVEVYEYIVDGLCIIGHLENAVLV---MEEAMRKGFCPNRFVYSRLS 507
>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
Length = 609
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 113/256 (44%), Gaps = 23/256 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D L+ L + + A VF K + ++ +F +LI CK ++ +
Sbjct: 309 DVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELH 368
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM + G PD V+Y + CR +D + + EM+ G +P +T T ++ K
Sbjct: 369 REMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKE 428
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-------------------IY 336
+++ A+++ + M ++ D Y++LI LSKA R Y
Sbjct: 429 EELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTY 488
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
+I + C + + L+L ++++ KP T+ + C +MK+ ++LN
Sbjct: 489 TMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLN---A 545
Query: 397 MLSKGIVPQESTHKML 412
M++ G+ P + T+ +L
Sbjct: 546 MINIGVSPDDITYNIL 561
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 14/194 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYNA+V L +++ +V E M + R DT + L+D K
Sbjct: 382 TYNAIVNGLCRARDLKSASGIVVE-------------MRSAGLRPDTVTYTTLIDGYCKE 428
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A ++ + + L + LI G K +S A++ + EM + G PD +Y
Sbjct: 429 EELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTY 488
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T I+ +CR+ D + LKEMQ KG KP V+T ++M+ K Q+ A + M +
Sbjct: 489 TMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMIN 548
Query: 311 DDCLTDTSFYSSLI 324
D Y+ L+
Sbjct: 549 IGVSPDDITYNILL 562
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 109/264 (41%), Gaps = 23/264 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ + +VLM LV+ +A A VF + + + + F+ +I G C+ D A+
Sbjct: 239 EAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLH 298
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ M + G +PD +Y I+ CR ++M +G KP+ + TI++ A K
Sbjct: 299 RRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKK 358
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIY 336
L+++ +M+ D Y++++ L +A + Y
Sbjct: 359 GDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTY 418
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
T+I C E A++++Q + + D T+ + R D VL E
Sbjct: 419 TTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLG---E 475
Query: 397 MLSKGIVPQESTHKMLAEELEKKS 420
M+ G+ P +T+ M+ + +K
Sbjct: 476 MMEAGLEPDNTTYTMVIDAFCRKG 499
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/199 (18%), Positives = 78/199 (39%), Gaps = 26/199 (13%)
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
++ G P+ + + R + EMQ +G + +V++ ++ + +A
Sbjct: 230 QLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAG 289
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYN 337
+ A ++ +M D Y +LI L + R +++
Sbjct: 290 DLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFT 349
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK--DGMLVLNLMR 395
+I + C + + L+L +++ E +PD T+ + C + +K G++V
Sbjct: 350 ILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVV----- 404
Query: 396 EMLSKGIVPQESTHKMLAE 414
EM S G+ P T+ L +
Sbjct: 405 EMRSAGLRPDTVTYTTLID 423
>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
Length = 649
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 118/270 (43%), Gaps = 24/270 (8%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
++ L K A +VF C ++ + F++LI G+C+ + A K KEM
Sbjct: 233 VLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRY 292
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
+PD VS++C I + R + L+EM+ G P + T+V+ +A + EAL
Sbjct: 293 VTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEAL 352
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-------------------IYNTMISSA 343
+V ++M CL D Y++L+ L K R L + T+I
Sbjct: 353 RVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGY 412
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C + NAL+L + +PD T+ + C K + L +M ++ I+
Sbjct: 413 CRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKAN---ELWDDMHAREIL 469
Query: 404 PQESTHKMLAEE-LEKKSLGNAKERIDELL 432
P T+ +L + EK + +A +DE++
Sbjct: 470 PNHITYSILIDSHCEKGQVEDAFGFLDEMV 499
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 114/291 (39%), Gaps = 60/291 (20%)
Query: 197 AYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256
AY++ L +++ ++++H +CKT + D A + EM + PD V++ I+
Sbjct: 144 AYRLVLSSDS--EVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDA 201
Query: 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL------EKAKQIY----------- 299
R D + M +G KP ++T V+ L +KAK+++
Sbjct: 202 RFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPD 261
Query: 300 ------------------EALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRFL- 334
EA+K Y++M+ D +S LI + S+ A +L
Sbjct: 262 VRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLR 321
Query: 335 ------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
IY +I C AL++R ++ C PD T+ L C +
Sbjct: 322 EMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQH 381
Query: 383 RMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELL 432
R+ D +LN EM +G+ P T L + + NA + D LL
Sbjct: 382 RLLDAEKLLN---EMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLL 429
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 74/359 (20%), Positives = 144/359 (40%), Gaps = 46/359 (12%)
Query: 98 LRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEID 157
++ RY +PD V + C ++ G M Y ++ LG G+++ +V
Sbjct: 288 MQHRYVTPDVVSFS----CLIGLFSRRGEMDHAGAYLREMKGLGLVPD-GVIYTMV---- 338
Query: 158 ELSNGYVSLAAMSTVMRRLD----------TRAMSVLMDTLVKRNSVAHAYKVFLKFKD- 206
G+ +MS +R D + L++ L K++ + A K+ + ++
Sbjct: 339 --IGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEER 396
Query: 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
++ F LIHG+C+ + A + + + PD V+Y I+ CR+ D K
Sbjct: 397 GVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKA 456
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-- 324
+ +M + P+ IT +I++ + + Q+ +A ++M L + Y+S+I
Sbjct: 457 NELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKG 516
Query: 325 ----FILSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
+ K +FL +NT+I A + +E++ +PD
Sbjct: 517 YCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPD 576
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
T+ + + M+D V + M GI P T+ L + GN+K+
Sbjct: 577 AVTYNMIINGFSEQGNMQDAGRVF---KGMGDSGIEPDRYTYMSLIN--GHVTAGNSKQ 630
>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
Length = 457
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 119/259 (45%), Gaps = 21/259 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++L+ L ++ V A +V + K + +S ++ L+H +CK +K D A + M
Sbjct: 176 NMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVS 235
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD VSY + CR + L ++++KGC P +I+ V+ L KA + E
Sbjct: 236 RGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKE 295
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
AL++ +M S D + Y+T+ + C +A++ K++
Sbjct: 296 ALELLNEMVSKGLQPD----------------IITYSTIAAGLCREDRIEDAIRAFGKVQ 339
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ +P+ + + C ++ ++L M+ G +P EST+ +L E L +
Sbjct: 340 DMGIRPNTVLYNAIILGLCKRRETHS---AIDLFAYMIGNGCMPNESTYTILIEGLAYEG 396
Query: 421 L-GNAKERIDELLTHATEQ 438
L A++ +DEL + A E+
Sbjct: 397 LIKEARDLLDELCSRAGEE 415
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 105/221 (47%), Gaps = 22/221 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G C ++ A + EM + PD V+YT +E C+ +++ L EM+
Sbjct: 35 YNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMR 94
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
+KGC P ++T +V++ + + ++ +A++ + + S C +T Y+ ++ L A R+
Sbjct: 95 DKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWE 154
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ +N +IS C + AL++ ++I + C P+ ++ L
Sbjct: 155 DAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLL 214
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C +K+M M L+L M+S+G P ++ L L
Sbjct: 215 HAFCKQKKMDKAMAFLDL---MVSRGCYPDIVSYNTLLTAL 252
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 22/207 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ ++ G+C + D A++ + EM PD +Y I C L EM
Sbjct: 3 YNAMVAGYCGAGQLDAARRLVAEM---PVEPDAYTYNTLIRGLCGRGRTANALAVLDEML 59
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ C P V+T TI++ A K +A+K+ ++M+ C D +
Sbjct: 60 RRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPD----------------IV 103
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN +++ C +A++ + + C+P+ ++ LK C +R +D LM
Sbjct: 104 TYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAE---ELM 160
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSL 421
EM KG P T ML L +K L
Sbjct: 161 GEMGQKGCPPNVVTFNMLISFLCRKGL 187
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 112/247 (45%), Gaps = 23/247 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ +++G CK + + A+K EM + G +PD VSY + YC+ + EM
Sbjct: 226 FNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMT 285
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILS 328
++G P V+T T ++HA KA + +A+ + +M+ + +++LI L
Sbjct: 286 QRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLD 345
Query: 329 KAV-------------RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
A+ + YN +I+ C A +L +++E KPD T++ +
Sbjct: 346 DALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTII 405
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTH 434
C + D LN ++ML KG++P T+ L L E+K L +A E + +L
Sbjct: 406 SGYCKVGNL-DSAFQLN--QKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQL 462
Query: 435 ATEQRTF 441
+ F
Sbjct: 463 GVQPDEF 469
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 134/303 (44%), Gaps = 19/303 (6%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
YNA++ K + L EL++E M + D S ++ K
Sbjct: 366 YNALINGYCKLGRMDLARELIRE-------------MEAKRVKPDVVTYSTIISGYCKVG 412
Query: 193 SVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
++ A+++ K K + + + LI G C+ ++ + A + + M Q G PD +YT
Sbjct: 413 NLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYT 472
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
I+ +C+E + K EM KG P V+T +++++ L K+ + EA ++ K+ +
Sbjct: 473 TLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHE 532
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
D + D Y +L+ SKA F ++ C++ A K+ Q + + + K D +
Sbjct: 533 DPVPDNIKYDALMLCCSKA-EFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVY 591
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDE 430
+ + C ++ L+ ++ML G P ++ L L E+ + A I +
Sbjct: 592 SILIHGHCRGGNVRK---ALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQD 648
Query: 431 LLT 433
LLT
Sbjct: 649 LLT 651
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 130/312 (41%), Gaps = 42/312 (13%)
Query: 132 TYNAMVEALGKSKKF----GLMWELVKE--------IDELSNGYVSLAAMSTVMRRLDTR 179
T+N+MV L K+ + + E+V+E + L +GY + + +
Sbjct: 225 TFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEM 284
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKS 228
L+ +V S+ HA + ++L +Q+ F LI G+CK
Sbjct: 285 TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFL 344
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A A++EM + G P V Y I YC+ ++EM+ K KP V+T + +
Sbjct: 345 DDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTI 404
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
+ K + A ++ +KM L D YSSLI R L ++ AC
Sbjct: 405 ISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI-------RGLCEEKRLNDAC---- 453
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+L + + + +PD T+ + C + ++ L+L EM+ KG++P T
Sbjct: 454 -----ELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEK---ALSLHDEMIRKGVLPDVVT 505
Query: 409 HKMLAEELEKKS 420
+ +L L K +
Sbjct: 506 YSVLINGLSKSA 517
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 96/226 (42%), Gaps = 26/226 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++L+ C + + A + +M G +P+ V+Y + +CR + + + M+
Sbjct: 155 YNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMR 214
Query: 275 EKG-CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
E+G KP+++T +++ L KA ++ A KV+++M + D
Sbjct: 215 EEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDV---------------- 258
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ YNT++S C +L + ++ + PD T + C ++ + ++
Sbjct: 259 VSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQ 318
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQR 439
MRE +G+ E T L + KK +D+ L E R
Sbjct: 319 MRE---RGLRMNEVTFTALIDGFCKKGF------LDDALLAVEEMR 355
>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 557
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 104/224 (46%), Gaps = 22/224 (9%)
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
S ++ LI G C ++ A + +M + G PD V+YT +E C+ +++ L
Sbjct: 156 SYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLD 215
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
EM+ KGC P +IT +V++ + + ++ +A++ + + S C +T Y+ ++ L A
Sbjct: 216 EMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAE 275
Query: 332 RF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
R+ + +N +IS C R A+++ +I + C P+ ++
Sbjct: 276 RWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYN 335
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
L C +K+M M + L M+S+G P ++ L L
Sbjct: 336 PILHAFCKQKKMDRAMAFVEL---MVSRGCYPDIVSYNTLLTAL 376
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 117/257 (45%), Gaps = 21/257 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++L+ L +R V A +V + K + +S ++ ++H +CK +K D A ++ M
Sbjct: 300 NMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVS 359
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD VSY + CR + L ++++KGC P +I+ V+ L KA + E
Sbjct: 360 RGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKE 419
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
AL++ +M + D + Y+T+ S C A++ K++
Sbjct: 420 ALELLNEMVTKGLQPD----------------IITYSTISSGLCREDRIEEAIRAFCKVQ 463
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ +P+ + L C ++ + ++L M+S G +P EST+ +L E L +
Sbjct: 464 DMGIRPNTVLYNAILLGLCKRRETHN---AIDLFIYMISNGCMPNESTYTILIEGLTYEG 520
Query: 421 L-GNAKERIDELLTHAT 436
L A+E + EL +
Sbjct: 521 LVKEARELLGELCSRGV 537
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 23/218 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ ++ G+C T + D A++ + +M PD +Y I C L +M
Sbjct: 127 YNAMVAGYCVTGQLDAARRLVADM---PMEPDSYTYNTLIRGLCGRGRTGNALVVLDDML 183
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+GC P V+T TI++ A K +A+K+ ++M++ C D +
Sbjct: 184 RRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPD----------------II 227
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN +++ C +A++ + + C+P+ ++ LK C +R +D LM
Sbjct: 228 TYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAE---KLM 284
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGN-AKERIDEL 431
EM KG P T ML L ++ L A E +D++
Sbjct: 285 AEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQI 322
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 102/218 (46%), Gaps = 25/218 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++++ G C + + A+K M EM Q G+ P+ V++ I CR L ++
Sbjct: 264 YNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIP 323
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ GC P+ ++ ++HA K K++ A+ E M S C D +
Sbjct: 324 KYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPD----------------IV 367
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YNT++++ C E A++L ++++ C P ++ + + K+ + +LN
Sbjct: 368 SYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLN-- 425
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
EM++KG+ P T+ ++ L + ++RI+E +
Sbjct: 426 -EMVTKGLQPDIITYSTISSGLCR------EDRIEEAI 456
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 14/147 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
+YN +++ L K+ K EL+ E M T + D S + L +
Sbjct: 403 SYNTVIDGLTKAGKTKEALELLNE-------------MVTKGLQPDIITYSTISSGLCRE 449
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ + A + F K +D I ++ +++ ++ G CK R++ A M +G P+ +Y
Sbjct: 450 DRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTY 509
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKG 277
T IE E ++ L E+ +G
Sbjct: 510 TILIEGLTYEGLVKEARELLGELCSRG 536
>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 347
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 22/221 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G CK A++ M EM G P+ ++YT I+ +C+E + L EM
Sbjct: 17 YNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMS 76
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
KG + + ++ AL K +++ +AL ++ M S C D ++SLIF L K +F
Sbjct: 77 GKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFE 136
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ YNT+I + R ALKL + C D T+ +
Sbjct: 137 EALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLI 196
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
K C ++ G L L +M+SKG+ P + +L L
Sbjct: 197 KALCRAGNIEKG---LALFEDMMSKGLNPNNISCNILINGL 234
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 110/289 (38%), Gaps = 33/289 (11%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
YN ++ AL K +K + + MS+ + D + L+ L K N
Sbjct: 87 YNCLISALCKDEK-------------VQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVN 133
Query: 193 SVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
A ++ + + ++ ++ LIH + + A K + +M G D ++Y
Sbjct: 134 KFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYN 193
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
I+ CR + K ++M KG P+ I+C I+++ L + I AL+ M
Sbjct: 194 GLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHR 253
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
D + YN++I+ C AL L K++ + PD T+
Sbjct: 254 GLTPD----------------IVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITY 297
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ C + D L L+ + G +P E T +L K+
Sbjct: 298 NTLISWHCKEGMFDDAHL---LLSRGVDSGFIPNEVTWYILVSNFIKEG 343
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 97/251 (38%), Gaps = 23/251 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++L+D K + A V + ++L++ ++ LI CK K A +M
Sbjct: 53 TILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSS 112
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD ++ I C+ F + ++M +G + IT ++HA + + E
Sbjct: 113 KGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQE 172
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMIS 341
ALK+ M C D Y+ LI L +A + N +I+
Sbjct: 173 ALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILIN 232
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C +AL+ + + PD T+ + C R ++ LNL ++ +G
Sbjct: 233 GLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQE---ALNLFDKLQVEG 289
Query: 402 IVPQESTHKML 412
I P T+ L
Sbjct: 290 ICPDAITYNTL 300
>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
Length = 814
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 149/332 (44%), Gaps = 44/332 (13%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G+ YN M++ L K+ G E +K +D + ++ A + T + +L
Sbjct: 255 GFPPDAIAYNTMIDGLAKA---GHAQEALKVLDNM----LAKACVPTEV------TYGIL 301
Query: 185 MDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+++L K ++ A ++F + +S I+ LIHG+ K+ + A EM + G+
Sbjct: 302 VNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGY 361
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD +++T I+ C+ +F + + +EM GCKP+V+T T ++ L K ++ A +
Sbjct: 362 RPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFR 421
Query: 304 VYEKMKSDDCLTDTSFYSSL------IFILSKAVRFL-------------IYNTMISSAC 344
+ + M + C D+ Y L + L +A + L +Y+++++ C
Sbjct: 422 IMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLC 481
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH--KKRMKDGML--VLNLMREMLSK 400
+ G+ K + E S K ET L CC K G L + + M+S+
Sbjct: 482 ---DGGSVEKTLDDLFEQS-KAAAETLDPGL--CCSIIVGLCKTGRLDEACRIFQRMVSE 535
Query: 401 GIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
G P +T+ +L L +S N ER LL
Sbjct: 536 GCKPDATTYNILINGL-CRSRENRVERAFALL 566
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 74/361 (20%), Positives = 140/361 (38%), Gaps = 51/361 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA Q G+ H TYN ++ L K + + + +E+ L G ++ R
Sbjct: 106 FRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEM--LKAGIAPNTFSFNILIRS 163
Query: 177 DTRAM----SVLMDTLVKRNSVAHAYKVFLKFKDCI---SLSSQIFDV------------ 217
R +V ++KR FL DC+ + + F+V
Sbjct: 164 FARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPP 223
Query: 218 -------LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ K ++ A++ +M + GF PD ++Y I+ + ++ L
Sbjct: 224 DRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVL 283
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
M K C P+ +T I++++L KA + A +++ M + ++ Y+SLI +K+
Sbjct: 284 DNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKS 343
Query: 331 VRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
R + + MI C A K +++ CKP+ T+
Sbjct: 344 GRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTY 403
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDE 430
++ R+ + +M+ M++ G P T+ L + K L A + +DE
Sbjct: 404 TTIIQGLSKIGRVAN---AFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDE 460
Query: 431 L 431
L
Sbjct: 461 L 461
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 78/204 (38%), Gaps = 18/204 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ L G C + D A +EM + G +PD +Y C I + K EM
Sbjct: 616 YTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMI 675
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
KG KP+V T T ++ AL A + EA +E M + L + +
Sbjct: 676 GKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGS---------------VM 720
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
IY+ +I C + ALKL + + P T A + + L+
Sbjct: 721 IYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQ---ELL 777
Query: 395 REMLSKGIVPQESTHKMLAEELEK 418
+EM + G P +T + + L K
Sbjct: 778 QEMAAGGSPPHAATFTAILDGLRK 801
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
S I+D LIHG+CK K D A K ++M G P V+ + R K L
Sbjct: 718 SVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELL 777
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+EM G P T T ++ L K+ + + LK+ ++
Sbjct: 778 QEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQE 814
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 132/306 (43%), Gaps = 43/306 (14%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSN--GYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+ +VEA GL+ E K D+L N VS+ + + + RL
Sbjct: 188 FQVLVEA-------GLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSF---------- 230
Query: 191 RNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ + A++VF ++ + + ++ +++++H C+ K A + +M G PD VS
Sbjct: 231 -DGIRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVS 289
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+ ++ YC+ + KV ++E+Q KG KP+ T ++ L K ++ EA +V MK
Sbjct: 290 YSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMK 349
Query: 310 SDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRSEEG 350
+ D Y++LI K+ F+ Y +MI C +
Sbjct: 350 NQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVV 409
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A KL ++ KPD T+ + C MK+ +L +M+ KG+ P T+
Sbjct: 410 EARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEA---FSLHNQMVEKGLTPNVVTYT 466
Query: 411 MLAEEL 416
L + L
Sbjct: 467 ALVDGL 472
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 117/264 (44%), Gaps = 33/264 (12%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFK------DCISLSSQIFDVLIHGWCKTRKSDY 230
D + L+ K +V+ YK+F + K D ++ +S +IHG C+ K
Sbjct: 356 DNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTS-----MIHGLCQAGKVVE 410
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A+K EM G PD V+YT I+ YC+ + ++ +M EKG P+V+T T ++
Sbjct: 411 ARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVD 470
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRF----------- 333
L K ++ A ++ +M + Y++LI L K AV+
Sbjct: 471 GLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFP 530
Query: 334 --LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+ Y T++ + C E A +L + + + +P T + C ++DG
Sbjct: 531 DTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGE--- 587
Query: 392 NLMREMLSKGIVPQESTHKMLAEE 415
L++ ML KGI+P +T L ++
Sbjct: 588 RLIKWMLDKGIMPNATTFNSLMKQ 611
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 145/331 (43%), Gaps = 37/331 (11%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL 166
KVVEA K F +K G TY A+++ K+ + +KE L N V
Sbjct: 407 KVVEARKLFSEMLSK---GLKPDEVTYTALIDGYCKAGE-------MKEAFSLHNQMVEK 456
Query: 167 AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKT 225
V+ + L+D L K V A ++ + + + + ++ LI+G CK
Sbjct: 457 GLTPNVV------TYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKV 510
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
+ A K M+EM GF PD ++YT ++ YC+ + K L+ M +KG +P+++T
Sbjct: 511 GNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTF 570
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
++M+ + + + ++ + M + + + +N+++ C+
Sbjct: 571 NVLMNGFCMSGMLEDGERLIKWMLDKGIMPNAT----------------TFNSLMKQYCI 614
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
R+ +++ + + PD T+ +K C + MK+ L +EM+ KG
Sbjct: 615 RNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWF---LHKEMVEKGFSLT 671
Query: 406 ESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
+++ L + ++K A++ +E+ TH
Sbjct: 672 AASYNSLIKGFYKRKKFEEARKLFEEMRTHG 702
>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
Length = 504
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 126/283 (44%), Gaps = 35/283 (12%)
Query: 130 PET--YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT 187
P T +N +V+ ++ +E+VKE+ Y +L ST L+
Sbjct: 188 PNTCIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYST------------LIGG 235
Query: 188 LVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L + + A + F + KD I + +++LI+G+C+ K D A+ ++ M +G SP
Sbjct: 236 LCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTILEFMKSNGCSP 295
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
+ +Y+ + YC+E ++ E++ G KP I+ T +++ L + ++ EA ++
Sbjct: 296 NVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELL 355
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
++MK DC DT + +N M+ C AL + QK+ +
Sbjct: 356 QQMKDKDCRADT----------------VTFNVMLGGLCREGRFDEALDMVQKLPFEGFY 399
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+ ++ L K ++ +L L ML++G VP +T
Sbjct: 400 LNKGSYRIVLNFLTQKGELRKATELLGL---MLNRGFVPHHAT 439
>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
Length = 567
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 135/314 (42%), Gaps = 39/314 (12%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G + YNA++ K+K FG ++ + E+ V + TV+ +
Sbjct: 70 EMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEM-------VKNHCLPTVV------TYT 116
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
++D L K A K+ + +D S + ++V++ G C+ RK D A+K ++EM
Sbjct: 117 NIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVR 176
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G+ PD V+Y FI+ C+ +VD K + P V++ T V++ L K+ + A
Sbjct: 177 GYFPDVVTYNSFIKGLCK---CDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSA 233
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKA-------------------VRFLIYNTMISS 342
++ + M + C D YSSLI K + YN+++ +
Sbjct: 234 SRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGA 293
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
G A + ++E PD ++ + C +R+K V + M+ +G
Sbjct: 294 LHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFD---RMVERGC 350
Query: 403 VPQESTHKMLAEEL 416
P S++ ML ++
Sbjct: 351 TPNASSYSMLIVDI 364
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 90/191 (47%), Gaps = 20/191 (10%)
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G+ + +Y + RE K +EM +K C+P T I++ L ++ Q+ +A
Sbjct: 2 GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
K+ +MK C+ D + Y++LI SKA F G A K ++ +
Sbjct: 62 RKLLGRMKEMGCVPDDAIYNALISGYSKAKDF----------------GQAFKFLAEMVK 105
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKS 420
+ C P T+ + C +R +D + +L+ MR+ KG P T+ ++ E L E++
Sbjct: 106 NHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRD---KGCSPNIYTYNVIVEGLCEERK 162
Query: 421 LGNAKERIDEL 431
L AK+ ++E+
Sbjct: 163 LDEAKKMLEEM 173
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 117/294 (39%), Gaps = 64/294 (21%)
Query: 204 FKDCISLSSQ----IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR 259
F++ I S Q F +L+ G C++ + + A+K + M + G PD Y I Y +
Sbjct: 30 FQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSK 89
Query: 260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC------ 313
KDF + L EM + C P+V+T T ++ L KA++ +A+K+ ++M+ C
Sbjct: 90 AKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYT 149
Query: 314 -----------------------------LTDTSFYSSLIFILSK------AVRFLI--- 335
D Y+S I L K A +FL
Sbjct: 150 YNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP 209
Query: 336 -------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
Y T+I+ C + +A ++ + C PD T++ + C ++ M
Sbjct: 210 VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAM 269
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATEQRTF 441
L+ ML G P + L L + +G A++ + E+ E+R F
Sbjct: 270 ---GLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEM-----ERRGF 315
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 123/306 (40%), Gaps = 62/306 (20%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELS-NGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
TYN +VE L + +K E K ++E++ GY D + + L K
Sbjct: 149 TYNVIVEGLCEERKLD---EAKKMLEEMAVRGYFP-----------DVVTYNSFIKGLCK 194
Query: 191 RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ V A K + ++ + +I+G CK+ D A + + M G +PD V+Y
Sbjct: 195 CDRVDEARKFLARMP--VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTY 252
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE----------------- 293
+ I+ +C+ + + L M + GC+P+++ ++ AL
Sbjct: 253 SSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMER 312
Query: 294 ------------------KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335
KA+++ +A V+++M C + S YS LI V L+
Sbjct: 313 RGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLI------VDILL 366
Query: 336 YNTMISSACVRSEEGNALKLRQKI-EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
Y ++ C A L K+ +E C+PD + L C ++++ L +
Sbjct: 367 YTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKA---LQIH 423
Query: 395 REMLSK 400
++ML K
Sbjct: 424 KQMLEK 429
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 25/216 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L+ + + D A +EM PD ++ + CR K L M+
Sbjct: 10 YNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMK 69
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
E GC P ++ KAK +A K +M + CL Y++++ L KA R
Sbjct: 70 EMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAER-- 127
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+A+KL ++ + C P+ T+ ++ C ++++ + ++
Sbjct: 128 --------------TRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAK---KML 170
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDE 430
EM +G P T+ + L K +R+DE
Sbjct: 171 EEMAVRGYFPDVVTYNSFIKGLCK------CDRVDE 200
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 129/306 (42%), Gaps = 29/306 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE--LSNGYVSL-AAMSTVMRRLDTRAMSVLMDTL 188
YN+++ AL + G +++ E++ + VS A + + + + + D +
Sbjct: 286 AYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRM 345
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF-SPDG 247
V+R +A + D + ++ VL+ G CK + D A ++ PD
Sbjct: 346 VERGCTPNASSYSMLIVDIL-----LYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDV 400
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
Y ++ +C+ + K K+M EK C +V+T I++H L ++ +A +
Sbjct: 401 FFYNVMLDSHCKRRQIDKALQIHKQMLEKNC-CNVVTWNILVHGLCVDDRLSDAETMLLT 459
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
M + + D F+ Y T++ + C + AL+L ++ + C PD
Sbjct: 460 MVDEGFIPD----------------FVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPD 503
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKER 427
T++ + H+ ++ L L +++ + VP + T +L +L+ + E
Sbjct: 504 VVTYSALITGLVHENMAEEAYL---LFTKLVERRWVPDDKTLGLLHRKLKLLNKPRKAEV 560
Query: 428 IDELLT 433
+D LT
Sbjct: 561 VDLYLT 566
>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 133/304 (43%), Gaps = 36/304 (11%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
+N ++ ++ + KK+ + L KE++ Y + +S+L++ +
Sbjct: 43 FNRLLSSVVRMKKYETVVSLFKEMEFRGIKY-------------NVCTLSILINCFCFLH 89
Query: 193 SVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
V + + VF K K IF LI G C+ K++ A +KEM G PD V+
Sbjct: 90 HVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCN 149
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ YC + KV M KG KP V + +I ++ K ++I EA++++++M
Sbjct: 150 SLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHR 209
Query: 312 DCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRSEEGNA 352
+ + Y++LI L +A+R L Y+T++ C +
Sbjct: 210 GVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEM 269
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
L L Q+++ KPD + + C +++KD VL+ ++ +G+ P T+ L
Sbjct: 270 LVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLS---RLIVEGLKPDVHTYTAL 326
Query: 413 AEEL 416
+ L
Sbjct: 327 VDGL 330
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/354 (20%), Positives = 148/354 (41%), Gaps = 56/354 (15%)
Query: 112 LKCFCF---------TWAKT-QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI----- 156
+ CFCF + KT + G+ + +++ + + K L L+KE+
Sbjct: 82 INCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGC 141
Query: 157 -------DELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYK 199
+ L GY S + V + + D + S+ ++ K + A +
Sbjct: 142 VPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAME 201
Query: 200 VFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258
+F + + ++ ++ LI C+ + AQ ++M G SPD ++Y+ ++ +C
Sbjct: 202 LFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFC 261
Query: 259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318
++ + ++ +EMQ + KP ++ TI+++ + +++++ +A +V ++ + D
Sbjct: 262 KQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVH 321
Query: 319 FYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
Y++L+ C AL+L +K+EED C P ++ L+ C
Sbjct: 322 TYTALV----------------DGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGC 365
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
D V+ L+ EM +G T L + L GN I +LL
Sbjct: 366 LQH---NDTSTVVQLIHEMADRGFYADAVTRTFLKDFLP----GNDSPAIKQLL 412
>gi|357455845|ref|XP_003598203.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487251|gb|AES68454.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 503
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 142/341 (41%), Gaps = 60/341 (17%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDEL------SNGYV-------------SLAAMST 171
++YN +++ + K +F L +L+ E+D++ + ++ ++ A +
Sbjct: 96 QSYNLLIDIVSKVHQFDLASQLIVEMDQINLPPTPTTFFILIKRLISANLTRQAVRAFNE 155
Query: 172 VMRRLDTRAMS----VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRK 227
+ DT+ S L+DTL K V HA ++F + + +++ VLI+GWCK +
Sbjct: 156 IESYTDTKLTSDHFTYLLDTLCKYGYVKHACELFNRNSNRFVADVKMYTVLIYGWCKIGR 215
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----------EKDFRKVDYTLKEMQEKG 277
A + EM G P+ V+Y + CR E+ R + EM+E G
Sbjct: 216 FKTALSFLNEMKVKGVEPNVVTYNVILNGICRKASLHPEERFERTIRDAEKVFDEMRESG 275
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF---- 333
+P V + +IV+H +A + L MK + Y+S+I L R
Sbjct: 276 IEPDVTSFSIVLHVYSRAHKPQLVLDKLGLMKEKGICPNVVTYTSVIKCLCSCGRIEEAE 335
Query: 334 -LI--------------YNTMISSACVRSEEGNALKLRQKIEEDS-CKPDCETHARSLKM 377
LI YN R + ALK +K++ED C+P T+ + M
Sbjct: 336 DLIDEMVRNGVSPCAATYNCFFKEYRGRKDADKALKFFKKMKEDGLCEPTTHTYGVLIAM 395
Query: 378 CCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLAEEL 416
+K M+ V + +M+ G+ P ++ +L L
Sbjct: 396 F-----LKADMIGVVKEIWNDMMESGVGPDLDSYTVLIHGL 431
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 191 RNSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
R A K F K K+ ++ + VLI + K ++ +M + G PD
Sbjct: 363 RKDADKALKFFKKMKEDGLCEPTTHTYGVLIAMFLKADMIGVVKEIWNDMMESGVGPDLD 422
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
SYT I C K +R+ EM EKG P +T + L ++ + L+ + ++
Sbjct: 423 SYTVLIHGLCESKKWREACQYFVEMIEKGFLPQKVTFETLYRGLIQS----DMLRTWRRL 478
Query: 309 K 309
K
Sbjct: 479 K 479
>gi|255661032|gb|ACU25685.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 373
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 136/308 (44%), Gaps = 46/308 (14%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV--SLAAMSTVMRR---L 176
TQ+G++ TY +V+ K NGY+ SL + + L
Sbjct: 86 TQSGFVEDSTTYGILVDGFCK------------------NGYINKSLRVLGIAEEKGGVL 127
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D A S +++ L K + A V K+ + ++ +++ LI+G+ K D A +
Sbjct: 128 DAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFVGVSKFDDAIRVF 187
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM SP V+Y I C+ + F + +KEM EKG KP VIT +++M L +
Sbjct: 188 REMGSTNCSPTVVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLMKGLCQG 247
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI----------------FILSK---AVRFLIY 336
++ AL+++ ++ S+ D + LI F +++ A + +
Sbjct: 248 HKVEMALQLWNQVISNGLKPDVQMLNILIHGLCSVGKTQLALMLYFDMNRWNCAPNLVTH 307
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT++ + NAL + +I + +PD ++ +LK C R+ +L L ++
Sbjct: 308 NTLMEGFYKDGDIRNALGIWARILRNGLQPDIVSYNITLKGLCSCSRISFAILFL---QD 364
Query: 397 MLSKGIVP 404
L+K I P
Sbjct: 365 ALAKKIAP 372
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 99/238 (41%), Gaps = 29/238 (12%)
Query: 189 VKRNSVAHAYKVFLKFKDCISL--------SSQI--FDVLIHGWCKTRKSDYAQKAMKEM 238
V N++ + + + KDCI L S + F++++ G D A + M
Sbjct: 26 VVYNAMLNGFFRAGRIKDCIELWELMGREDSQNVVSFNIMMRGLFGNGDVDKAISIWELM 85
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
Q GF D +Y ++ +C+ K L +EKG + +++ L K ++
Sbjct: 86 TQSGFVEDSTTYGILVDGFCKNGYINKSLRVLGIAEEKGGVLDAFAYSAMINGLCKEAKL 145
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK 358
EA+ V M + + +YNT+I+ S+ +A+++ ++
Sbjct: 146 DEAVSVLNGMIKNGGTPNAH----------------VYNTLINGFVGVSKFDDAIRVFRE 189
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ +C P T+ + C +R + +L++EML KG P T+ +L + L
Sbjct: 190 MGSTNCSPTVVTYNTLINGLCKGERFAE---AYDLVKEMLEKGWKPCVITYSLLMKGL 244
>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 452
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 84/392 (21%), Positives = 161/392 (41%), Gaps = 66/392 (16%)
Query: 106 DKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVS 165
DKV E L AK G+ +Y +++ L K+ + ++++ ID L +
Sbjct: 63 DKVKETLHFHDDVIAK---GFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLL-VQPN 118
Query: 166 LAAMSTVMR-----RLDTRAMSVLMDTLVKR--------NSVAHAYKVFLKFKDCISLSS 212
+ ST++ +L A + L+KR N++ + + + K+ + L +
Sbjct: 119 VVMYSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFN 178
Query: 213 QI-----------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
Q+ F++L+ G CK + A+ + M + PD ++Y ++ Y K
Sbjct: 179 QMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVK 238
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
K + M +G P V + +++++ L K K + EA+ + ++M S +T YS
Sbjct: 239 QENKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYS 298
Query: 322 SLIFILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEED 362
SLI L K+ R + YN+++ + C + A+ L KI++
Sbjct: 299 SLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQ 358
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLV------------------LNLMREMLSKGIVP 404
+PD T+ + C R+KD V L+L+ +M G P
Sbjct: 359 GIQPDIYTYTILVDGLCKNGRLKDAQEVYQILLIKGYHLDSLFDKALSLLSKMEDNGCTP 418
Query: 405 QESTHKMLAEELEKKSLGN-AKERIDELLTHA 435
T ++L L + + + A E + E++
Sbjct: 419 NPVTFEILIRALFENDMNDKAVELLREMIARG 450
>gi|15220166|ref|NP_178170.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75264854|sp|Q9M8M3.1|PP136_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g80550, mitochondrial; Flags: Precursor
gi|6730729|gb|AAF27119.1|AC018849_7 unknown protein; 31926-33272 [Arabidopsis thaliana]
gi|332198297|gb|AEE36418.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 448
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 146/346 (42%), Gaps = 57/346 (16%)
Query: 108 VVEALKCFC---------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE 158
V EAL C+ F W + ++G+ HT ET+N +++ LGK +F + W L+ +
Sbjct: 50 VCEALTCYSNDWQKALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIG 109
Query: 159 LSNGYVSLAAMSTVMRRL----------------------DTRAMSVLMDTLVKRNSVAH 196
+ + V +R D + L+D L + V
Sbjct: 110 NTESVPNHVTFRIVFKRYVTAHLVQEAIDAYDKLDDFNLRDETSFYNLVDALCEHKHVVE 169
Query: 197 AYKV-FLK--FKDCISLS-SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
A ++ F K + S+S ++I ++++ GW K ++ K+M G + D SY+
Sbjct: 170 AEELCFGKNVIGNGFSVSNTKIHNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSI 229
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
+++ C+ K KEM+ + K V+ V+ A+ ++ + ++V+ +M+
Sbjct: 230 YMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERG 289
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
C + + +NT+I C +A ++ ++ + C+PD
Sbjct: 290 CEPNVA----------------THNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPD----- 328
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
S+ C R++ +L+L M+ G+ P+ T+ ML + E+
Sbjct: 329 -SITYMCLFSRLEKPSEILSLFGRMIRSGVRPKMDTYVMLMRKFER 373
>gi|413951888|gb|AFW84537.1| hypothetical protein ZEAMMB73_783984 [Zea mays]
Length = 238
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 104/241 (43%), Gaps = 20/241 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
++ + L++ + ++ A K++++ + I ++ LI G CK K A
Sbjct: 9 NSHVYNALINGFCRACKISDAVKIYIEMTGNGCCPTIITYNTLIDGLCKAEKYQEASSLT 68
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KEM + GF PD +Y I CR K E+ + G + VI I++H L A
Sbjct: 69 KEMLERGFKPDIRTYGSLIRGLCRVKKIDAALCIWNEILDAGIQVDVIVHNILIHGLCSA 128
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ +A +Y +MK +C + + YNT++ A L
Sbjct: 129 GKVNDAFCIYLEMKEKNC----------------SPNLVTYNTLMDGFYEIGSIDTAASL 172
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
I ++ KPD T+ +K C R +G+L+LN E+L+ GI+P T +L
Sbjct: 173 WAAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLN---EVLATGIMPSVITWSILVRA 229
Query: 416 L 416
+
Sbjct: 230 V 230
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 19/144 (13%)
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M + GCKP+ +++ +A +I +A+K+Y +M + C
Sbjct: 1 MMKDGCKPNSHVYNALINGFCRACKISDAVKIYIEMTGNGCCP----------------T 44
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
+ YNT+I C + A L +++ E KPD T+ ++ C K++ + + N
Sbjct: 45 IITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYGSLIRGLCRVKKIDAALCIWN 104
Query: 393 LMREMLSKGIVPQESTHKMLAEEL 416
E+L GI H +L L
Sbjct: 105 ---EILDAGIQVDVIVHNILIHGL 125
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 25/201 (12%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAM 169
T G T TYN +++ L K++K+ L KE+ E L G + +
Sbjct: 37 TGNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYGSLIRGLCRVKKI 96
Query: 170 STVM----------RRLDTRAMSVLMDTLVKRNSVAHAYKVFL--KFKDCISLSSQIFDV 217
+ ++D ++L+ L V A+ ++L K K+C S + ++
Sbjct: 97 DAALCIWNEILDAGIQVDVIVHNILIHGLCSAGKVNDAFCIYLEMKEKNC-SPNLVTYNT 155
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
L+ G+ + D A + +G PD V+Y I+ C + L E+ G
Sbjct: 156 LMDGFYEIGSIDTAASLWAAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATG 215
Query: 278 CKPSVITCTIVMHALEKAKQI 298
PSVIT +I++ A+ + I
Sbjct: 216 IMPSVITWSILVRAVIRYGPI 236
>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 821
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 118/266 (44%), Gaps = 24/266 (9%)
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
+ +++ L K+ V A VF K F+ + + + LI G C+ RK D A + M
Sbjct: 199 TFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRM 258
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
+ G +P+ V+Y+ I C E + L+EM EKG +P+V T T+ + +L ++
Sbjct: 259 VKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRV 318
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTM 339
+A+ + M C Y+++I L +A + + YN +
Sbjct: 319 DDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNAL 378
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I+ C G ALK+ +E + +T+ + +K ++ M+V N +ML
Sbjct: 379 INELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFN---KMLK 435
Query: 400 KGIVPQESTHK-MLAEELEKKSLGNA 424
G P T+ ++ E L++ L NA
Sbjct: 436 DGPSPTVVTYNTLIVENLKRGYLNNA 461
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 136/332 (40%), Gaps = 31/332 (9%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFG-------LMWELVKEIDEL---SNGYVSL 166
F W + Y H + +M+ L K K LM + + DEL ++ +
Sbjct: 91 FYWISKRHFYKHDMGCFVSMLNRLVKDKILAPADHVRILMIKACRNEDELKRVTDFLHGI 150
Query: 167 AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKT 225
++ + + + + L+ L K + V A V+ + F + S F+ +I+ CK
Sbjct: 151 SSSDSGLFGFTLYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKK 210
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
K A ++FQ PD +YT I +CR + K M + GC P+ +T
Sbjct: 211 GKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTY 270
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
+ +++ L +I EA+ + E+M + + Y+ Y ISS C
Sbjct: 271 STLINGLCNEGRIGEAMDMLEEMTEKG--IEPTVYT--------------YTVPISSLCD 314
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+A+ L + + + C P +T+ + +M+ L + + +ML +G+VP
Sbjct: 315 IGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKME---LAIGMYHKMLKEGLVPN 371
Query: 406 ESTHKMLAEEL-EKKSLGNAKERIDELLTHAT 436
T+ L EL + G A + D + H T
Sbjct: 372 TVTYNALINELCTEGRFGIALKIFDWMEGHGT 403
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 127/305 (41%), Gaps = 35/305 (11%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F W + G + +TYN +++ L FG+ D++ V M
Sbjct: 395 FDWMEGH-GTLANAQTYNQIIKGL-----FGM--------DDIEKAMVVFNKMLKDGPSP 440
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ L+ +KR + +A + K+ + + LI G+CK K D A
Sbjct: 441 TVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFF 500
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM + G SP+ +YT I+ YC+E + M+E GC S+ T ++ L K
Sbjct: 501 YEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKG 560
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----AVRFLIYNTMISSACVRS---- 347
+ EA K KM +T Y+SLI L K + F I++ M C+ +
Sbjct: 561 NRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTY 620
Query: 348 --------EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
+EG + +++ E+ C+P +T++ + C + R + ++ M+E
Sbjct: 621 TSLIYGLCQEGK-VDAAERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKE--- 676
Query: 400 KGIVP 404
KG+ P
Sbjct: 677 KGLSP 681
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 134/305 (43%), Gaps = 43/305 (14%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G + ETYNA++ L K +F E ++ A M+ + +T +
Sbjct: 540 ENGCSASIETYNAIISGLSKGNRF-------SEAEKFC------AKMTEQGLQPNTITYT 586
Query: 183 VLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L++ L K + A+K+F ++ K+C+ ++ + LI+G C+ K D A++ + +
Sbjct: 587 SLINGLCKNTATNLAFKIFHEMEKKNCLP-NAHTYTSLIYGLCQEGKVDAAER----LTE 641
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV-ITCTIVMHALEKAKQIY 299
+G P +Y+ + CRE + ++ M+EKG PS+ I C++++ A K+ ++
Sbjct: 642 NGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLV-AHCKSLKVD 700
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
AL+++ +L+ + IY +I + C S AL + Q +
Sbjct: 701 CALEIF----------------NLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSL 744
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK- 418
+ D + + D L + + M S+ P T+ +LA EL K
Sbjct: 745 LKKQWNSDLIVWTVLVDGLLQE---GDSDLCMKFLYLMESRNCTPSLHTYIILARELSKV 801
Query: 419 -KSLG 422
KS+G
Sbjct: 802 GKSIG 806
>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 141/306 (46%), Gaps = 40/306 (13%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
G + TYN+++ + K L + K DE+S V+ A++ ++
Sbjct: 206 VGVLPNLYTYNSLITEYCRDGKLSLAF---KVFDEISKRGVACNAVT----------YNI 252
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ L ++ V+ A + + K I+ +++ F++L+ G C T + D A ++++ G
Sbjct: 253 LIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIG 312
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
P V+Y I + + + V ++EM+++G PS +T TI+M+ ++ I +A
Sbjct: 313 LCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAY 372
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFIL---------SKAVRFL----------IYNTMISSA 343
+++ MK + D Y LI L SK + + IYNTMI+
Sbjct: 373 EMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGY 432
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV--LNLMREMLSKG 401
C ALK +++ ++ P+ ++ ++++ C KDG + L++EM G
Sbjct: 433 CKECNSYKALKFLEEMVKNGVTPNVASYISTIQILC-----KDGKSIEAKRLLKEMTEAG 487
Query: 402 IVPQES 407
+ P ES
Sbjct: 488 LKPPES 493
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 23/190 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE--LSNGYVSLAAMSTVMRRLDTRAMS 182
G T TYN ++ K ++ ELV+E+++ +S V+ + R D +
Sbjct: 312 GLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKA 371
Query: 183 VLMDTLVKRNSVA---HAYKVFLK--------------FKDCISLSSQ----IFDVLIHG 221
M L+KR + H Y V + +K + + Q I++ +I+G
Sbjct: 372 YEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMING 431
Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
+CK S A K ++EM ++G +P+ SY I+ C++ + LKEM E G KP
Sbjct: 432 YCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPP 491
Query: 282 VITCTIVMHA 291
C+ V A
Sbjct: 492 ESLCSKVGQA 501
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/287 (20%), Positives = 120/287 (41%), Gaps = 26/287 (9%)
Query: 132 TYNAMVEALGKSKKFGL--MWELVK---EIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
T+ E LG+++ F + W +K E +S G+ LA M T+ + ++L++
Sbjct: 92 TWGFFTEYLGRTQ-FDVYSFWITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIE 150
Query: 187 TLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+ + A +F + D ++ + I+ ++I+G+ K + ++M G P
Sbjct: 151 ACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLP 210
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
+ +Y I YCR+ E+ ++G + +T I++ L + Q+ +A +
Sbjct: 211 NLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLL 270
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
E+MK T +N ++ C + AL +K++
Sbjct: 271 ERMKRAHINPTTR----------------TFNMLMDGLCNTGQLDKALSYLEKLKLIGLC 314
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
P T+ + ++ + +V L+REM +GI P + T+ +L
Sbjct: 315 PTLVTYN---ILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTIL 358
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 99/259 (38%), Gaps = 24/259 (9%)
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
+D L K ++ + F ++ F + I +C+ + + +M G S
Sbjct: 80 LDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFWITIKAFCENGNVSKGFELLAQMETMGVS 139
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P+ YT IE CR D + M + G + TI+++ K + ++
Sbjct: 140 PNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFEL 199
Query: 305 YEKMKSDDCLTDTSFYSSLI------FILSKAVRF-------------LIYNTMISSACV 345
Y+KMK L + Y+SLI LS A + + YN +I C
Sbjct: 200 YQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCR 259
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ + A L ++++ P T + C+ ++ + L ++ + G+ P
Sbjct: 260 KGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLI---GLCPT 316
Query: 406 ESTHKMLAEELEKKSLGNA 424
T+ +L K +GN+
Sbjct: 317 LVTYNILISGFSK--VGNS 333
>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 579
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/368 (21%), Positives = 154/368 (41%), Gaps = 52/368 (14%)
Query: 103 PSPDKVVEALKCFCFTWAKT----------QTGYMHTPETYNAMVEAL---GKSKKFGLM 149
PS + + C+C T T + GY T+ +++ + G++ + L
Sbjct: 43 PSIVTLTILMNCYCHTGGITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLF 102
Query: 150 WELVK----EIDELS-----NGYVSLAAMSTVMRRL-------DTRAMSVLMDTLVKRNS 193
+ V ++D++S NG + M+ L D S ++D+L K
Sbjct: 103 HDHVVAHGFKLDQVSYAILMNGLCKMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKF 162
Query: 194 VAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
V AY+++ + I + F +L+ CK RK A + M + G P+ V+Y
Sbjct: 163 VTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGA 222
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
++ YC K M ++G +P+V I+++ L K K++ EA+ ++++M
Sbjct: 223 IMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKK 282
Query: 313 CLTDTSFYSSLIFIL-------------------SKAVRFLIYNTMISSACVRSEEGNAL 353
D Y+ LI L K V + YN+++ + C A+
Sbjct: 283 INPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAI 342
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
L ++I++ +P+ T+ + C R++D ++ +E+L++G T+ ++
Sbjct: 343 TLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIF---QEILTEGYHITVWTYNVMI 399
Query: 414 EELEKKSL 421
L KK L
Sbjct: 400 NGLCKKGL 407
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 113/267 (42%), Gaps = 33/267 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G T++ +V+AL K +K L LA M + + +
Sbjct: 177 GIFPNVYTFSILVDALCKDRKGKQAMNL-------------LAMMMKKGVKPNVVTYGAI 223
Query: 185 MDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
MD N V A +F + ++ + + ++++I+G CK ++ D A KEM
Sbjct: 224 MDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKI 283
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+PD V+Y I+ C+ + EM+ G +IT ++HAL K + +A+
Sbjct: 284 NPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAIT 343
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVR----FLI---------------YNTMISSAC 344
+ +++K + Y++LI L K R ++I YN MI+ C
Sbjct: 344 LVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLC 403
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETH 371
+ AL L ++E+++C PD ++
Sbjct: 404 KKGLFDEALALLSRMEDNACIPDAVSY 430
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 88/185 (47%), Gaps = 4/185 (2%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D ++L+D L K ++ + ++ + + I ++ L+H CK D A +
Sbjct: 286 DVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLV 345
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KE+ G P+ +YT I+ C++ +E+ +G +V T ++++ L K
Sbjct: 346 KEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKK 405
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
EAL + +M+ + C+ D Y ++I+ LS+ + N ++ + VR G + +L
Sbjct: 406 GLFDEALALLSRMEDNACIPDAVSYETIIYALSEKGETVKTNKLLCAMIVR---GLSKRL 462
Query: 356 RQKIE 360
++K+
Sbjct: 463 KKKVN 467
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/272 (20%), Positives = 115/272 (42%), Gaps = 27/272 (9%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+++LM+ + + + K K +S F LI G C ++ A +
Sbjct: 48 LTILMNCYCHTGGITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVV 107
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
HGF D VSY + C+ + R ++ +++ V+ + ++ +L K K +
Sbjct: 108 AHGFKLDQVSYAILMNGLCKMGETRA---AMQMLRKTWVNADVVMYSTIIDSLCKGKFVT 164
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLI-----------------FILSKAVR--FLIYNTMI 340
+A ++Y +M + + +S L+ ++ K V+ + Y ++
Sbjct: 165 DAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIM 224
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
C+ ++ AL + + ++ +P+ + + C KKR+ + M NL +EM K
Sbjct: 225 DGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAM---NLFKEMHWK 281
Query: 401 GIVPQESTHKMLAEELEK-KSLGNAKERIDEL 431
I P T+ +L + L K + + E +DE+
Sbjct: 282 KINPDVVTYNILIDGLCKLGKISTSLELVDEM 313
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 90/216 (41%), Gaps = 19/216 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ ++ K A +++ +G P V+ T + YC + L ++
Sbjct: 13 FNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSILTKIL 72
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
+ G +P+ IT T ++ + Q YEAL ++ + + D Y+ L+ L K
Sbjct: 73 KMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKMGETR 132
Query: 330 -AVRFL----------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
A++ L +Y+T+I S C +A +L ++ P+ T + +
Sbjct: 133 AAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDAL 192
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
C ++ K M NL+ M+ KG+ P T+ + +
Sbjct: 193 CKDRKGKQAM---NLLAMMMKKGVKPNVVTYGAIMD 225
>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
Length = 653
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 133/330 (40%), Gaps = 44/330 (13%)
Query: 115 FCFTWAKTQTGYMHTPE--TYNAMVEALGKSKKFGLMWELV-KEIDE-----------LS 160
F F+ H P+ T+ ++ L K G L K I E L
Sbjct: 123 FAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLI 182
Query: 161 NGYVSLAAMSTVMRRL----------DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCIS 209
NG + S +R L + S L+D+L K V A+ +F + IS
Sbjct: 183 NGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGIS 242
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+ ++ LIHG CK + + M EM PD + ++ C+E +
Sbjct: 243 PNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDV 302
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
+ M +G +P+V+T +M ++ A+KV++ M DC+ +
Sbjct: 303 VDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANV------------ 350
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ YNT+I+ C A+ L +++ P+ T+ + CH R++D
Sbjct: 351 ----ISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDA-- 404
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKK 419
++L EM+++G +P T++ L++ L K
Sbjct: 405 -ISLFHEMVARGQIPDLVTYRTLSDYLCKN 433
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 116/269 (43%), Gaps = 27/269 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ LMD RN V A KVF + KDC++ + ++ LI+G+CK + D A +EM
Sbjct: 319 NALMDGHCLRNEVDVAVKVFDTMVHKDCVA-NVISYNTLINGYCKIQSVDKAMYLFEEMS 377
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ +P+ V+Y I C + EM +G P ++T + L K + +
Sbjct: 378 RQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLD 437
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKA-----VRFLI--------------YNTMI 340
+A+ + + ++ + D Y++++ + +A R L YN MI
Sbjct: 438 KAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMI 497
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKP-DCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
C + A KL ++ ++ C P DC + + R + + + L+ EML+
Sbjct: 498 HGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFL----RNNEALRTIELLEEMLA 553
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERI 428
+G ST +L L L + ++I
Sbjct: 554 RGFSVDVSTTTLLVGMLSDDGLDQSVKQI 582
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/288 (19%), Positives = 117/288 (40%), Gaps = 43/288 (14%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
+N ++ ++ K+K + L +++D D +++++++L N
Sbjct: 73 FNRLLTSIAKTKHHSTLLSLSRQMDSFG-------------IPPDVYTLAIVINSLCHLN 119
Query: 193 SVAHAYKVFLKFKDCISLSSQ----IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
V A+ K + L Q F LI G C K A +M GF P+ V
Sbjct: 120 RVDFAFSALAKI---LKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVV 176
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+Y I C+ + L+ M++ C+P+V+ + ++ +L K +Q+ EA ++ +M
Sbjct: 177 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEM 236
Query: 309 KSDDCLTDTSFYSSLIFILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
++K + + YN++I C E + L ++ + P
Sbjct: 237 ------------------ITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMP 278
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
D T + C + + + V+++ M+ +G+ P T+ L +
Sbjct: 279 DVFTLNTVVDALCKEGMVAEAHDVVDM---MIHRGVEPNVVTYNALMD 323
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 93/222 (41%), Gaps = 20/222 (9%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
++I+ C + D+A A+ ++ + G PD ++T I C E + + +M +
Sbjct: 110 IVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGE 169
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336
G +P+V+T +++ L K A+++ M+ +C + +++
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNV----------------VVF 213
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
+T+I S C + A + ++ P+ T+ + C K V LM E
Sbjct: 214 STLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKH---VTTLMNE 270
Query: 397 MLSKGIVPQESTHKMLAEELEKKSL-GNAKERIDELLTHATE 437
M+ I+P T + + L K+ + A + +D ++ E
Sbjct: 271 MVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVE 312
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 11/180 (6%)
Query: 153 VKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL-- 210
V + L NGY + ++ M + + L V N++ H + +D ISL
Sbjct: 350 VISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFH 409
Query: 211 ----SSQIFDVLIHG-----WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
QI D++ + CK R D A +K + + PD YT ++ CR
Sbjct: 410 EMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAG 469
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
+ + KG +P+V T I++H L K + EA K++ +M + C + Y+
Sbjct: 470 ELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYN 529
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/346 (20%), Positives = 144/346 (41%), Gaps = 45/346 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV------------KEIDELSNGYV 164
F W +TQ G + + +VE LG +++F E++ + EL+ GY
Sbjct: 6 FKWVRTQRGGVPSVRACTTLVEMLGIARRFNEAEEVLAEVEKSRYILQPRIFIELARGYA 65
Query: 165 SLAAMST---VMRRLD-------TRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQ 213
S + ++R++ A + L+D VK A V+ + + + +
Sbjct: 66 SAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTY 125
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F+VL++ + K ++ D K +EM SP+ ++Y+ I+ C+ K +M
Sbjct: 126 TFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDM 185
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR- 332
+ +GC+P++ T T ++ L K+ + +A ++E+M S+ + Y+SLI L ++ R
Sbjct: 186 KSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRA 245
Query: 333 ------------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
+ + +++ V A ++ Q+ + C D +
Sbjct: 246 DAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVL 305
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ C KR+ + + E+ G+VP T L + L K
Sbjct: 306 IDTLCKSKRLDEAWEIFG---ELEEDGLVPDVYTFNALMDGLCKSG 348
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 129/313 (41%), Gaps = 36/313 (11%)
Query: 113 KCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
K F T G + T YN+++ LG+S + +L +E+ LS G
Sbjct: 212 KAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREM--LSKGL--------- 260
Query: 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYA 231
+ D + L+ L + A ++F + +D +L +++VLI CK+++ D A
Sbjct: 261 --QPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEA 318
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
+ E+ + G PD ++ ++ C+ L +M+ GC P V ++
Sbjct: 319 WEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDG 378
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN 351
L K+ ++ EA ++ +M+S L + YNT+I +C +
Sbjct: 379 LRKSGRVEEAGQLLLEMQS----------------LGYEPDVVTYNTLIDESCKGGRIED 422
Query: 352 ALKLRQKIEEDSCK--PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV-PQEST 408
AL+L EE S K + T+ L C R+ + + N M++ G++ P T
Sbjct: 423 ALRL---FEEISAKGFANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVT 479
Query: 409 HKMLAEELEKKSL 421
+ L + L
Sbjct: 480 YTTLLNGARQAGL 492
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/350 (22%), Positives = 143/350 (40%), Gaps = 81/350 (23%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
Q+G T+N ++ A K+K+ +W+L +E+ N S ++ S
Sbjct: 117 QSGLRPDTYTFNVLMNAFKKAKRVDSVWKL---FEEMQNQNCSPNVIT----------YS 163
Query: 183 VLMDTLVKRNSVAHAYKVFLKFK---------------DCISLSSQI------------- 214
+L+D + K V A KVFL K D + S +
Sbjct: 164 ILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSE 223
Query: 215 --------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC---REKDF 263
++ LIHG ++ ++D A K +EM G PD V++T + R +
Sbjct: 224 GLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEA 283
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
R++ +E ++ GC V +++ L K+K++ EA +++ +++ D + D +++L
Sbjct: 284 RRI---FQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNAL 340
Query: 324 IFILSKAVRF-------------------LIYNTMISS--ACVRSEEGNALKLRQKIEED 362
+ L K+ R +YNT+I R EE L L +++
Sbjct: 341 MDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLL--EMQSL 398
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+PD T+ + C R++D L L E+ +KG + + +L
Sbjct: 399 GYEPDVVTYNTLIDESCKGGRIED---ALRLFEEISAKGFANTVTYNTIL 445
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 112/247 (45%), Gaps = 23/247 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ +++G CK + + A+K EM + G +PD VSY + YC+ + EM
Sbjct: 226 FNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMT 285
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILS 328
++G P V+T T ++HA KA + +A+ + +M+ + +++LI L
Sbjct: 286 QRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLD 345
Query: 329 KAV-------------RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
A+ + YN +I+ C A +L +++E KPD T++ +
Sbjct: 346 DALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTII 405
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTH 434
C + D LN ++ML KG++P T+ L L E+K L +A E + +L
Sbjct: 406 SGYCKVGNL-DSAFQLN--QKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQL 462
Query: 435 ATEQRTF 441
+ F
Sbjct: 463 GVQPDEF 469
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 134/303 (44%), Gaps = 19/303 (6%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
YNA++ K + L EL++E M + D S ++ K
Sbjct: 366 YNALINGYCKLGRMDLARELIRE-------------MEAKRVKPDVVTYSTIISGYCKVG 412
Query: 193 SVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
++ A+++ K K + + + LI G C+ ++ + A + + M Q G PD +YT
Sbjct: 413 NLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYT 472
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
I+ +C+E + K EM KG P V+T +++++ L K+ + EA ++ K+ +
Sbjct: 473 TLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHE 532
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
D + D Y +L+ SKA F ++ C++ A K+ Q + + + K D +
Sbjct: 533 DPVPDNIKYDALMLCCSKA-EFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVY 591
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDE 430
+ + C ++ L+ ++ML G P ++ L L E+ + A I +
Sbjct: 592 SILIHGHCRGGNVRK---ALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQD 648
Query: 431 LLT 433
LLT
Sbjct: 649 LLT 651
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 130/312 (41%), Gaps = 42/312 (13%)
Query: 132 TYNAMVEALGKSKKF----GLMWELVKE--------IDELSNGYVSLAAMSTVMRRLDTR 179
T+N+MV L K+ + + E+V+E + L +GY + + +
Sbjct: 225 TFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEM 284
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKS 228
L+ +V S+ HA + ++L +Q+ F LI G+CK
Sbjct: 285 TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFL 344
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A A++EM + G P V Y I YC+ ++EM+ K KP V+T + +
Sbjct: 345 DDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTI 404
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
+ K + A ++ +KM L D YSSLI R L ++ AC
Sbjct: 405 ISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI-------RGLCEEKRLNDAC---- 453
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+L + + + +PD T+ + C + ++ L+L EM+ KG++P T
Sbjct: 454 -----ELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEK---ALSLHDEMIRKGVLPDVVT 505
Query: 409 HKMLAEELEKKS 420
+ +L L K +
Sbjct: 506 YSVLINGLSKSA 517
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 96/226 (42%), Gaps = 26/226 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++L+ C + + A + +M G +P+ V+Y + +CR + + + M+
Sbjct: 155 YNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMR 214
Query: 275 EKG-CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
E+G KP+++T +++ L KA ++ A KV+++M + D
Sbjct: 215 EEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDV---------------- 258
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ YNT++S C +L + ++ + PD T + C ++ + ++
Sbjct: 259 VSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQ 318
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQR 439
MRE +G+ E T L + KK +D+ L E R
Sbjct: 319 MRE---RGLRMNEVTFTALIDGFCKKGF------LDDALLAVEEMR 355
>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 141/306 (46%), Gaps = 40/306 (13%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
G + TYN+++ + K L + K DE+S V+ A++ ++
Sbjct: 206 VGVLPNLYTYNSLITEYCRDGKLSLAF---KVFDEISKRGVACNAVT----------YNI 252
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ L ++ V+ A + + K I+ +++ F++L+ G C T + D A ++++ G
Sbjct: 253 LIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIG 312
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
P V+Y I + + + V ++EM+++G PS +T TI+M+ ++ I +A
Sbjct: 313 LCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAY 372
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFIL---------SKAVRFL----------IYNTMISSA 343
+++ MK + D Y LI L SK + + IYNTMI+
Sbjct: 373 EMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGY 432
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV--LNLMREMLSKG 401
C ALK +++ ++ P+ ++ ++++ C KDG + L++EM G
Sbjct: 433 CKECNSYKALKFLEEMVKNGVTPNVASYISTIQILC-----KDGKSIEAKRLLKEMTEAG 487
Query: 402 IVPQES 407
+ P ES
Sbjct: 488 LKPPES 493
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 119/286 (41%), Gaps = 24/286 (8%)
Query: 132 TYNAMVEALGKSK----KFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT 187
T+ E LG+++ FG+ + E +S G+ LA M T+ + ++L++
Sbjct: 92 TWGFFTEYLGRTQFDVYSFGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEA 151
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQ-IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
+ + A +F + D ++Q I+ ++I+G+ K + ++M G P+
Sbjct: 152 CCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPN 211
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
+Y I YCR+ E+ ++G + +T I++ L + Q+ +A + E
Sbjct: 212 LYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLE 271
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
+MK T +N ++ C + AL +K++ P
Sbjct: 272 RMKRAHINPTTR----------------TFNMLMDGLCNTGQLDKALSYLEKLKLIGLCP 315
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
T+ + ++ + +V L+REM +GI P + T+ +L
Sbjct: 316 TLVTYN---ILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTIL 358
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 23/190 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE--LSNGYVSLAAMSTVMRRLDTRAMS 182
G T TYN ++ K ++ ELV+E+++ +S V+ + R D +
Sbjct: 312 GLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKA 371
Query: 183 VLMDTLVKRNSVA---HAYKVFLK--------------FKDCISLSSQ----IFDVLIHG 221
M L+KR + H Y V + +K + + Q I++ +I+G
Sbjct: 372 YEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMING 431
Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
+CK S A K ++EM ++G +P+ SY I+ C++ + LKEM E G KP
Sbjct: 432 YCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPP 491
Query: 282 VITCTIVMHA 291
C+ V A
Sbjct: 492 ESLCSKVGQA 501
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 99/259 (38%), Gaps = 24/259 (9%)
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
+D L K ++ + F ++ F + I +C+ + + +M G S
Sbjct: 80 LDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITIKAFCENGNVSKGFELLAQMETMGVS 139
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P+ YT IE CR D + M + G + TI+++ K + ++
Sbjct: 140 PNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFEL 199
Query: 305 YEKMKSDDCLTDTSFYSSLI------FILSKAVRF-------------LIYNTMISSACV 345
Y+KMK L + Y+SLI LS A + + YN +I C
Sbjct: 200 YQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCR 259
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ + A L ++++ P T + C+ ++ + L ++ + G+ P
Sbjct: 260 KGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLI---GLCPT 316
Query: 406 ESTHKMLAEELEKKSLGNA 424
T+ +L K +GN+
Sbjct: 317 LVTYNILISGFSK--VGNS 333
>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 117/263 (44%), Gaps = 25/263 (9%)
Query: 180 AMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
+ ++++ L K V A +VF + + C+ + L+ G CK + D A + E
Sbjct: 189 SFNLVIKALCKLRFVDRAIEVFRGMPERKCLP-DGYTYCTLMDGLCKEERIDEAVLLLDE 247
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M G SP V Y I+ C++ D +V + M KGC P+ +T ++H L +
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGK 307
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRFL-------------IYNT 338
+ +A+ + E+M S C+ + Y +LI L K AVR L IY+
Sbjct: 308 LDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSV 367
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+IS + A+ L +K+ E CKP+ ++ + C + + + +LN M+
Sbjct: 368 LISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILN---RMI 424
Query: 399 SKGIVPQESTHKMLAEELEKKSL 421
+ G +P T+ L + K L
Sbjct: 425 ASGCLPNAYTYSSLMKGFFKTGL 447
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 118/283 (41%), Gaps = 28/283 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L++ LVK+ A ++ ++ L+ I+ VLI G K K++ A ++M +
Sbjct: 331 GTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAE 390
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ V Y+ ++ CRE + L M GC P+ T + +M K E
Sbjct: 391 KGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEE 450
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMIS 341
A++V+++M C + YS LI L R + Y+++I
Sbjct: 451 AVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIK 510
Query: 342 SACVRSEEGNALKLRQKI---EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
C ALKL ++ EE +PD T+ L C +K + ++L+ ML
Sbjct: 511 GLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRA---VDLLNSML 567
Query: 399 SKGIVPQESTHKMLAEELEKKSLGNAKER--IDELLTHATEQR 439
+G P T L +KS K R ++EL+ +++
Sbjct: 568 DRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLLKRQ 610
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 16/189 (8%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS + F+++I CK R D A + + M + PDG +Y ++ C+E+ +
Sbjct: 183 ISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAV 242
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
L EMQ +GC PS + +++ L K + K+ + M C+ +
Sbjct: 243 LLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNE---------- 292
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+ YNT+I C++ + A+ L +++ C P+ T+ + ++R D
Sbjct: 293 ------VTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDA 346
Query: 388 MLVLNLMRE 396
+ +L+ M E
Sbjct: 347 VRLLSSMEE 355
>gi|255661008|gb|ACU25673.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 369
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 144/342 (42%), Gaps = 53/342 (15%)
Query: 104 SPDKVV--EALKCF--------CF-TWAKTQTGYMHTPETYNAMVEAL---GKSKKFGLM 149
SPD VV L F CF W + ++N M+ L G+ + +
Sbjct: 22 SPDAVVYNAMLNGFYRAGRIKDCFELWEMMGREGNRSVASFNIMMRGLFDNGRVDEVNSI 81
Query: 150 WELVKEIDELS--------------NGYV--SLAAMSTVMRR---LDTRAMSVLMDTLVK 190
WEL+K+ + NGY+ SL + T R+ LD A S +++ L K
Sbjct: 82 WELMKKGGYVEDSITYGILVHGFCKNGYINKSLRVLETAERKGGVLDAFAYSAMINGLCK 141
Query: 191 RNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A V K ++ +++ LI+G KS+ A + +EM SP V+
Sbjct: 142 ETKLEKAISVLNGMIKSGCKPNTHVYNALINGLIGASKSEDAIRVFREMGITHCSPTIVT 201
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y I C+ + F + +KEM EKG PSVIT +++M L +I AL+++ ++
Sbjct: 202 YNILINGLCKSERFGEAYDLVKEMLEKGLTPSVITYSLLMKGLCLGHKIEMALQLWNQVT 261
Query: 310 SDDCLTDTSFYSSLIFILSK-------------------AVRFLIYNTMISSACVRSEEG 350
+ D +++LI L A + NT++ +
Sbjct: 262 KNGFKPDVQMHNTLIHGLCSVGKTQLALSLYLDMNYWNCAPNLVTQNTLMEGFYKDGDMR 321
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
NAL + +I ++ +PD ++ +LK C R+ D +L LN
Sbjct: 322 NALVIWARILKNELQPDIISYNITLKGLCSCNRISDAILFLN 363
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 102/238 (42%), Gaps = 29/238 (12%)
Query: 189 VKRNSVAHAYKVFLKFKDCISL----------SSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
V N++ + + + KDC L S F++++ G + D + M
Sbjct: 26 VVYNAMLNGFYRAGRIKDCFELWEMMGREGNRSVASFNIMMRGLFDNGRVDEVNSIWELM 85
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
+ G+ D ++Y + +C+ K L+ + KG + +++ L K ++
Sbjct: 86 KKGGYVEDSITYGILVHGFCKNGYINKSLRVLETAERKGGVLDAFAYSAMINGLCKETKL 145
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK 358
+A+ V M C +T Y++LI N +I ++ +SE+ A+++ ++
Sbjct: 146 EKAISVLNGMIKSGCKPNTHVYNALI------------NGLIGAS--KSED--AIRVFRE 189
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ C P T+ + C +R + +L++EML KG+ P T+ +L + L
Sbjct: 190 MGITHCSPTIVTYNILINGLCKSERFGE---AYDLVKEMLEKGLTPSVITYSLLMKGL 244
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 24/230 (10%)
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
C++ D A++ K++ SPD V Y + + R + + L EM + SV
Sbjct: 1 CESGDIDGAERVYKDIVDSKVSPDAVVYNAMLNGFYRAGRIKDC-FELWEMMGREGNRSV 59
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF------ILSKAVRFL-- 334
+ I+M L ++ E ++E MK + D+ Y L+ ++K++R L
Sbjct: 60 ASFNIMMRGLFDNGRVDEVNSIWELMKKGGYVEDSITYGILVHGFCKNGYINKSLRVLET 119
Query: 335 -----------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
Y+ MI+ C ++ A+ + + + CKP+ + + +
Sbjct: 120 AERKGGVLDAFAYSAMINGLCKETKLEKAISVLNGMIKSGCKPNTHVYNALINGLIGASK 179
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDELL 432
+D + V REM P T+ +L L K + G A + + E+L
Sbjct: 180 SEDAIRVF---REMGITHCSPTIVTYNILINGLCKSERFGEAYDLVKEML 226
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 102/461 (22%), Positives = 190/461 (41%), Gaps = 75/461 (16%)
Query: 3 PKHDIWKLLSQSHLQKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPS 62
P + ++ + HH PL L R+C T +T + ++ FFD IP
Sbjct: 39 PNPILPAAFNREEISFHH---PLSLFL--RNCKTGNITAIQAF-HFFDLMM--RSHPIPP 90
Query: 63 LASWVESL----KLNEQSRISS-------HALSEDHETDVDKVSEILRKRYPSPDKVVEA 111
++S+ L K+N S++ S LS D T IL + ++V EA
Sbjct: 91 ISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFT-----LSILANCLCNVNRVSEA 145
Query: 112 LKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMST 171
L + GY+ TY +++ L + I E + ++
Sbjct: 146 LAAMA---GILRRGYIPNVVTYTTLIKGLCMEHR----------ISEATRLFLR------ 186
Query: 172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQ----------IFDVLIH 220
M++L +V TL+K + LK K+ ++ +SQ + ++I
Sbjct: 187 -MQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIID 245
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G CK + D A++ +EM G PD +SY+ I +C + + + EM ++G +P
Sbjct: 246 GLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQP 305
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340
++T ++++ L K ++ EA K+ E M + + + YN++I
Sbjct: 306 DMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPN----------------LITYNSLI 349
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
C+ + +A +L + +PD ++ + C ++K+ M NL EML
Sbjct: 350 DGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAM---NLYNEMLQV 406
Query: 401 GIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHATEQRT 440
G P +T+ L + L +K +G+AK+ + T+ +
Sbjct: 407 GKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANS 447
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 120/297 (40%), Gaps = 58/297 (19%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D SVL+DTL K V A K+ + + I + ++ LI G+C + A++
Sbjct: 306 DMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELF 365
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M G PD +SYT I YC+ ++ EM + G P+V T ++ L +
Sbjct: 366 LSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQK 425
Query: 296 KQIYEALKVYEKMKS-------------------DDCL----------------TDTSFY 320
++ +A K++ MK+ +DCL + Y
Sbjct: 426 GKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENY 485
Query: 321 SSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEE 361
S LI L KA + + YN MI C + NA L +K+EE
Sbjct: 486 SCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEE 545
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
+ C PD + L C ++++ V+ L+ +M+ K + P ++ ++ + L K
Sbjct: 546 NGCTPDIIAYNTLLCGFCEGNKLEE---VIKLLHKMVQKDVSPNAASCTIVVDMLCK 599
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 114/286 (39%), Gaps = 39/286 (13%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVK-------EIDELS-----NGYVS----- 165
Q G + TYN++++ EL E DE+S NGY
Sbjct: 335 QRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVK 394
Query: 166 -----LAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLI 219
M V + + L+ L ++ V A K+F K +S +SQI+ + +
Sbjct: 395 EAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFL 454
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
G CK A + E+ + F + +Y+C I+ C+ +++ ++G +
Sbjct: 455 DGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQ 514
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTM 339
P V+T I++H K Q+ A ++EKM+ + C D + YNT+
Sbjct: 515 PDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPD----------------IIAYNTL 558
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
+ C ++ +KL K+ + P+ + + M C ++ K
Sbjct: 559 LCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYK 604
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
E Y+ +++ L K+ K WEL +++ + + D ++++ K
Sbjct: 483 ENYSCLIDGLCKAGKLETAWELFEKLSQEG-------------LQPDVVTYNIMIHGFCK 529
Query: 191 RNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
V +A +F K ++ I ++ L+ G+C+ K + K + +M Q SP+ S
Sbjct: 530 VGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAAS 589
Query: 250 YTCFIEHYCREKDFRK 265
T ++ C+++ ++K
Sbjct: 590 CTIVVDMLCKDEKYKK 605
>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
Length = 321
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 116/260 (44%), Gaps = 25/260 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+L+D L K N + A+++ + + C ++ +F+ ++ CK +S A ++ M
Sbjct: 14 GILVDGLCKANRLTDAFELVEVMAERGCFP-NALVFNGIMDALCKEGRSAEAYGYIETMR 72
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G SP V+Y I+ +C+E+ + L+EM +G +P+ +T +H L K ++
Sbjct: 73 SMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVD 132
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-------------------IYNTMI 340
+AL ++ M D Y++LI L +A + YN ++
Sbjct: 133 DALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAIL 192
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
S C S A KL +++ PD T + C R+ D +L L+++M S
Sbjct: 193 SWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALL---LLQQMKSA 249
Query: 401 GIVPQESTHKMLAEELEKKS 420
G+ P+E + L + L +
Sbjct: 250 GLAPREVIYNTLIDALNRAG 269
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 18/202 (8%)
Query: 124 TGYMHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
TG H P TYN + L K K + + AM+ RLD
Sbjct: 107 TGRGHEPNHVTYNTFLHGLCKYGK-------------VDDALALFRAMTEKKIRLDVYGY 153
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ L+D L + +A AY + ++ C+ ++ ++ CK + + A K K M
Sbjct: 154 TTLIDGLCQAGKLAEAYSLLDEMENSGCVP-KPGCYNAILSWLCKGSRINEAHKLFKRMT 212
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G PD +++ + YCR L++M+ G P + ++ AL +A ++
Sbjct: 213 GSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVS 272
Query: 300 EALKVYEKMKSDDCLTDTSFYS 321
EA ++ ++M S ++ Y+
Sbjct: 273 EAYRLLQEMISRGLSPNSRTYA 294
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 23/179 (12%)
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M EKGC P+V+T I++ L KA ++ +A ++ E M C + ++ ++ L K R
Sbjct: 1 MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGR 60
Query: 333 -------------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
+ YN +I C + AL++ Q++ +P+ T+
Sbjct: 61 SAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
L C ++ D L L R M K I + L + L + L A +DE+
Sbjct: 121 FLHGLCKYGKVDD---ALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEM 176
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 86/217 (39%), Gaps = 22/217 (10%)
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M + G P V++ ++ C+ ++ M E+GC P+ + +M AL K +
Sbjct: 1 MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGR 60
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLI--FI----LSKAVRFL-------------IYNT 338
EA E M+S Y+ LI F L +A+ L YNT
Sbjct: 61 SAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+ C + +AL L + + E + D + + C ++ + +L+ EM
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAE---AYSLLDEME 177
Query: 399 SKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA 435
+ G VP+ + + L K S N ++ + +T +
Sbjct: 178 NSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGS 214
>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 807
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 95/216 (43%), Gaps = 20/216 (9%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
+IH +C+ D A M G P+ Y C I+ +C D K + + E++ KG
Sbjct: 427 VIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKG 486
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337
P +++ +++ L K +++EA ++++ + D + ++SL
Sbjct: 487 LGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSL-------------- 532
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
I C+ + A ++ + +PD T+ + CC R+ DG++ L RE+
Sbjct: 533 --IDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLI---LFREL 587
Query: 398 LSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELL 432
L KG+ P T+ ++ + L AKE E++
Sbjct: 588 LHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMI 623
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 119/297 (40%), Gaps = 40/297 (13%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
S ++ L K V A +F + + + + ++ +IH CK R D AQ +++M
Sbjct: 215 STVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVG 274
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
+G PD V+Y I Y +++ KEM +G P+ +TC+ + L K +I E
Sbjct: 275 NGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEE 334
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL----IYNTMISSACVRSEE------- 349
A + ++ M + + YS+L+ + A + ++N M+ V ++
Sbjct: 335 AREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVN 394
Query: 350 --------GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
A+ + + +++ PD T+ + C M D M N M+ KG
Sbjct: 395 GYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFN---HMIDKG 451
Query: 402 IVPQESTHKMLAE----------------ELEKKSLGNAKERIDELLTH-ATEQRTF 441
+ P + ++ L + E+ K LG L+ H E R F
Sbjct: 452 VEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVF 508
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ ++HG K K A EM Q G P+ V+Y I C+ + K L++M
Sbjct: 213 VYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQM 272
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
G +P +T ++H Q +A++++++M S + +T S+ + L K R
Sbjct: 273 VGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGR 331
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 1/142 (0%)
Query: 184 LMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L++ L K V A ++F + + IF LI G+C K A + M G
Sbjct: 497 LINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVG 556
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
PD V+Y + C+ +E+ KG KP+ T I++ L A + A
Sbjct: 557 IEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAK 616
Query: 303 KVYEKMKSDDCLTDTSFYSSLI 324
+++++M YS L+
Sbjct: 617 EMFQEMIESGIAVTIPTYSILL 638
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 117/294 (39%), Gaps = 46/294 (15%)
Query: 153 VKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF------KD 206
V + +S G A+ TV S+L+D + + A+ F D
Sbjct: 84 VALFNRMSTGTGPRVALPTVY------TYSILIDCCCRARRLDLAFAFFGCLLRQGMKAD 137
Query: 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAM-KEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
I +SS L+ G C +++D A + M + G PD +SY+ ++ C D +
Sbjct: 138 VIVVSS-----LLRGLCDAKRTDEAVDVLFHRMPELGCVPDAISYSTVLKSVC---DDGR 189
Query: 266 VDYTLKEM-----QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
+ L + Q GC +V+ + V+H L K ++ EA ++ +M + Y
Sbjct: 190 SQWALDILRMAVKQGGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTY 249
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
+S+I L KA R+ + LRQ + + +PD T+ +
Sbjct: 250 NSVIHALCKA---------------RAVDKAQGILRQMV-GNGVQPDNVTYNTLIHGYST 293
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLT 433
+ K + + +EM S+G++P T L K + A+E D +L
Sbjct: 294 LGQWKQ---AVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLA 344
>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
montevidensis]
Length = 431
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 121/280 (43%), Gaps = 33/280 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L + R + D SVL++ L K + +
Sbjct: 170 KWGLRPSVV-SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKI 228
Query: 195 AHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
A ++F + K + +S F LI G CK + D A + K+M SPD ++Y
Sbjct: 229 DDANELFDEMLVKGLVP-NSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 287
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I C++ D ++ + + EM KG KP IT T ++ K + A + ++M ++
Sbjct: 288 LIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQEN 347
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
D ++Y +IS C + +A K+ +++ KPD T+
Sbjct: 348 TRLDD----------------VVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYT 391
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C K + G L++EM G VP T+ +L
Sbjct: 392 MIINEFCKKGDVWKGS---KLLKEMQRDGHVPSVVTYNVL 428
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 108/261 (41%), Gaps = 51/261 (19%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
S F++L+H +CK AQ + + G P VSY + Y R D +
Sbjct: 141 SLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 200
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------ 324
M G +P V T +++++ L K +I +A +++++M + ++ +++LI
Sbjct: 201 SAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKN 260
Query: 325 -----------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+LS+++ + YNT+I C + + A L ++ KPD T+
Sbjct: 261 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITY 320
Query: 372 ARSLKMCC----------HKKRM--------------------KDGMLV--LNLMREMLS 399
+ CC H+KRM ++G V ++REMLS
Sbjct: 321 TTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLS 380
Query: 400 KGIVPQESTHKMLAEELEKKS 420
G+ P T+ M+ E KK
Sbjct: 381 VGLKPDARTYTMIINEFCKKG 401
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
L ++ LI G C+ +S A+K ++EM G PD +YT I +C++ D K
Sbjct: 350 LDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKL 409
Query: 270 LKEMQEKGCKPSVITCTIVMHA 291
LKEMQ G PSV+T ++M+
Sbjct: 410 LKEMQRDGHVPSVVTYNVLMNG 431
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G CK D A + K M Q D V YT I CRE + L+EM
Sbjct: 320 YTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREML 379
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G KP T T++++ K +++ K+ ++M+ D + Y+ L+
Sbjct: 380 SVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/198 (19%), Positives = 78/198 (39%), Gaps = 22/198 (11%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+E+ + G+ + + +C++ D R + + G +PSV++ +M+ +
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIY 336
+ E ++ M + D YS LI L K + + +
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTF 250
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
T+I C A+++ +++ S PD T+ + C K +K +L+ E
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH---HLIDE 307
Query: 397 MLSKGIVPQESTHKMLAE 414
M KG+ P + T+ L +
Sbjct: 308 MSMKGLKPDKITYTTLID 325
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 19/161 (11%)
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
+EH + K F+ V +E+ E G S+ I+MH K I A V+ D
Sbjct: 114 LEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVF------DA 167
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
+T S++ YNT+++ + +L+ + +PD T++
Sbjct: 168 ITKWGLRPSVV----------SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSV 217
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ C + ++ D L EML KG+VP T L +
Sbjct: 218 LINGLCKESKIDDAN---ELFDEMLVKGLVPNSVTFTTLID 255
>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g02150-like [Cucumis
sativus]
Length = 822
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 131/307 (42%), Gaps = 28/307 (9%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI---DELSNGY--VSLAAMST 171
F WA +Q G+ HT E+Y +V + +++ + + VKE+ + G+ ++ M
Sbjct: 91 FKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFPVCNIFDMLW 150
Query: 172 VMRRL---DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS-SQIFDVLIHGWCKTRK 227
R + + VL V+ + A + F + ++ +L ++ + L+H K+
Sbjct: 151 STRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGN 210
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
+K +M G +P +Y I++ C+E D +M+E G P V+T
Sbjct: 211 GQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNS 270
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRS 347
++ K + E ++ +MK C+ D + YN +I+ C
Sbjct: 271 LIDGYGKVGSLEEVASLFNEMKDVGCVPDI----------------ITYNGLINCYCKFE 314
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
+ A + +++ + KP+ T++ + C + M+ + L+ +M G++P E
Sbjct: 315 KMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGA---IKLLXDMRRTGLLPNEF 371
Query: 408 THKMLAE 414
T+ L +
Sbjct: 372 TYTSLID 378
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 127/295 (43%), Gaps = 33/295 (11%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+TG + TY ++++A K+ W+L+ D L G +L+ +
Sbjct: 363 RTGLLPNEFTYTSLIDANCKAGNLTEAWKLLN--DMLQAGV-----------KLNIVTYT 409
Query: 183 VLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+D L K + A +VF KD IS + Q++ L+HG+ K + + A K +K+M +
Sbjct: 410 ALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTEC 469
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
PD + Y I +C ++ + L+EM+ +G + + T ++ A KA + +A
Sbjct: 470 NIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDA 529
Query: 302 LKVYEKMKSDDCLTDTSFYSSLI------FILSKAVRFL-------------IYNTMISS 342
L +++M+ Y LI I+ AV + +Y ++I
Sbjct: 530 LNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDG 589
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
C + +A KL +++ PD + +++ +++++ M E+
Sbjct: 590 LCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTEL 644
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 125/272 (45%), Gaps = 33/272 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN++++ GK V ++E+++ + + + V D + L++ K
Sbjct: 267 TYNSLIDGYGK----------VGSLEEVASLFNEMKDVGCVP---DIITYNGLINCYCKF 313
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A++ F + K+ + + + LI +CK A K + +M + G P+ +Y
Sbjct: 314 EKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTY 373
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T I+ C+ + + L +M + G K +++T T ++ L KA ++ EA +V+ M
Sbjct: 374 TSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLK 433
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
D + Y++L+ KA R +A+K+ +++ E + KPD
Sbjct: 434 DGISPNQQVYTALVHGYIKAERM----------------EDAMKILKQMTECNIKPDLIL 477
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
+ + C ++++++ L+L EM S+GI
Sbjct: 478 YGSIIWGHCSQRKLEETKLIL---EEMKSRGI 506
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 1/144 (0%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ ++D K + A F + +D + + + VLI G C+ + A M
Sbjct: 514 TTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLS 573
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ YT I+ C EMQ +G P + T ++ K + E
Sbjct: 574 LGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQE 633
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI 324
AL + +M D Y+SL+
Sbjct: 634 ALVLISRMTELAIEFDLHVYTSLV 657
>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 138/325 (42%), Gaps = 48/325 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA + + H TY A++ L ++ G MW+ ++E+ S + A +S +++ L
Sbjct: 111 FKWAGKRRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVR-STCVIGPADLSEIVKVL 169
Query: 177 D-----TRAMSVLMDTLVKR--------NSV-------AHAYKVFLKFK------DCISL 210
+A+S+ ++ NS+ H KV + DC+
Sbjct: 170 GKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLP- 228
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
+ + LI + K + D A EM ++G P YT + Y + K +
Sbjct: 229 DTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLV 288
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
+EM+EKGC +V T T ++ + KA ++ EA ++ M + C D ++LI +L KA
Sbjct: 289 QEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKA 348
Query: 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK-RMKDGML 389
R +A+KL +++E C P+ T+ +K K R + L
Sbjct: 349 GRL----------------ADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFL 392
Query: 390 VLNLMREMLSKGIVPQESTHKMLAE 414
M+E G+VP T+ +L +
Sbjct: 393 WYEKMKE---NGVVPSSFTYSILID 414
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 118/273 (43%), Gaps = 40/273 (14%)
Query: 123 QTGYMHTPETYNAMVEALGKSKK----FGLMWELVKE--------IDELSNGYVSLAAMS 170
+ G T TY +++ +GK+ K + + ++KE I+ L N ++
Sbjct: 293 EKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLA 352
Query: 171 TV------MRRLDTRAMSVLMDTLVKR--NSVAHAYKVFLKFK----DCISLSSQIFDVL 218
M L V +T++K S A A + FL ++ + + SS + +L
Sbjct: 353 DAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSIL 412
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
I G+CKT + + A ++EM + GF+P +Y I + K + + +E++E
Sbjct: 413 IDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCG 472
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNT 338
S +++ L K ++ EA+ ++ +MK C D Y++L +S VR + +
Sbjct: 473 YSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNAL---MSGMVRVGMTD- 528
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
A L + +EE+ C PD +H
Sbjct: 529 ------------EAHSLLRTMEENGCTPDLNSH 549
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 93/208 (44%), Gaps = 14/208 (6%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G+ P Y +++ ALGK+K++ EL +E+ E + GY S R +
Sbjct: 434 EKGFAPCPAAYCSLINALGKAKRYEAANELFQELRE-NCGYSS------------ARVYA 480
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
V++ L K ++ A +F + K + ++ L+ G + +D A ++ M ++
Sbjct: 481 VMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEEN 540
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G +PD S+ + + R + M+ KP V++ V+ L +A EA
Sbjct: 541 GCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEA 600
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSK 329
K+ ++M S D YSS++ + K
Sbjct: 601 AKLMKEMNSKGFEYDLITYSSILEAVGK 628
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 109/247 (44%), Gaps = 21/247 (8%)
Query: 90 DVDKVSEILRKRYPSPDKVVEALKCFCFTWAKT--QTGYMHTPETYNAMVEALGKSKKFG 147
+V + +++ + S + EA F W + + G + + TY+ +++ K+ +
Sbjct: 369 NVVTYNTVIKALFESKARASEA-----FLWYEKMKENGVVPSSFTYSILIDGFCKTNRVE 423
Query: 148 LMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-D 206
L++E+DE G+ A A L++ L K A ++F + + +
Sbjct: 424 KALLLLEEMDE--KGFAPCPA-----------AYCSLINALGKAKRYEAANELFQELREN 470
Query: 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
C S++++ V+I K + A EM + G +PD +Y + R +
Sbjct: 471 CGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEA 530
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
L+ M+E GC P + + I+++ + A++++ +MK+ D Y++++
Sbjct: 531 HSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGC 590
Query: 327 LSKAVRF 333
LS+A F
Sbjct: 591 LSRAGMF 597
>gi|413934769|gb|AFW69320.1| hypothetical protein ZEAMMB73_542469 [Zea mays]
Length = 539
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 104/222 (46%), Gaps = 28/222 (12%)
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT--- 269
+I+++L++GW + R+ D A+K M G P V+Y FI+ +C R+ D+
Sbjct: 184 RIYNILLNGWSRARRLDKAEKLWAAMRDEGVRPTVVTYGTFIDAHC---VMRRPDHAMAL 240
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI--- 326
L +M+E+G + +++TC +++AL A + +A KV EK + S ++SL+F
Sbjct: 241 LDQMREEGIEANLLTCNPIVYALAHAGRFGDAHKVLEKFPLYGVAPNISTFNSLVFGYCR 300
Query: 327 ---LSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
L+ A R L YN + + L K+ + PD T
Sbjct: 301 HGDLAGASRVLKAMLGRGISPTARTYNYFFTVFARNLSIDLGMNLYVKMVSNGYAPDRLT 360
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ +KM C R++ L L +++EM + G P +T ML
Sbjct: 361 YHLLIKMLCEANRLE---LTLQMLQEMRNSGFEPDLATSTML 399
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 48/101 (47%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS +++ ++ + + D +M +G++PD ++Y I+ C
Sbjct: 319 ISPTARTYNYFFTVFARNLSIDLGMNLYVKMVSNGYAPDRLTYHLLIKMLCEANRLELTL 378
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
L+EM+ G +P + T T+++H L + Q EA +E+M
Sbjct: 379 QMLQEMRNSGFEPDLATSTMLIHLLCRRHQFEEAFAEFEQM 419
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 86/202 (42%), Gaps = 23/202 (11%)
Query: 132 TYNAMVEALGKSKKFG---------LMWELVKEI---DELSNGYV---SLAAMSTVMRRL 176
T N +V AL + +FG ++ + I + L GY LA S V++ +
Sbjct: 255 TCNPIVYALAHAGRFGDAHKVLEKFPLYGVAPNISTFNSLVFGYCRHGDLAGASRVLKAM 314
Query: 177 DTRAMSVLMDT------LVKRN-SVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKS 228
R +S T + RN S+ +++K + + + +LI C+ +
Sbjct: 315 LGRGISPTARTYNYFFTVFARNLSIDLGMNLYVKMVSNGYAPDRLTYHLLIKMLCEANRL 374
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+ + ++EM GF PD + T I CR F + ++M E+G P IT ++
Sbjct: 375 ELTLQMLQEMRNSGFEPDLATSTMLIHLLCRRHQFEEAFAEFEQMFERGMVPQYITYRML 434
Query: 289 MHALEKAKQIYEALKVYEKMKS 310
M L++ + K+ + M+S
Sbjct: 435 MRELKRLGLVKLVQKLADLMRS 456
>gi|357117116|ref|XP_003560320.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Brachypodium distachyon]
Length = 598
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 105/246 (42%), Gaps = 22/246 (8%)
Query: 190 KRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
K VA A ++ + + + LS + + L++GWC+ K D A+ + M G +PD V
Sbjct: 169 KTGHVAAAERLVEELQPRLPLSIRHYTALLYGWCRLGKLDEAKHVLARMKAAGVAPDVVV 228
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
+ + + F +EM+ + C P+ ++ T +M L ++ E ++V+ +M+
Sbjct: 229 FNTLLAGFVAADRFEDAFELAREMERRDCPPNAVSYTTLMQGLGSRGRVDEVMRVFVEMR 288
Query: 310 SDDCLTDTSFYSSLIFILSKAVRF---LIYNTMISSACVRSEEG---------------- 350
C D+ Y +L+ KA R + +S +R + G
Sbjct: 289 RKGCAPDSVTYGTLVSAFCKAGRLSQGYEFLDAMSRDALRVDPGVYLGFFVAHEKKEQLE 348
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
L+L +++ E C PD + L++ C K M + N EM + G+ P T
Sbjct: 349 ECLELMERMRECRCPPDLGIYNVVLRLSCKLGETKQAMALWN---EMENSGLSPGVDTFA 405
Query: 411 MLAEEL 416
++ L
Sbjct: 406 IMVNGL 411
>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 131/283 (46%), Gaps = 30/283 (10%)
Query: 179 RAMSVLMDTLV-----KRN-SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQ 232
R +V+ +TL+ K N +A AYK + K IS + ++ LIH +++D A+
Sbjct: 323 RPSAVIYNTLIDGFCNKGNLDMASAYKDEM-LKKGISPTMSTYNSLIHALFMEQRTDEAE 381
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+KE+ + G SPD ++Y I YCR + +K EM G KP+ T T ++H L
Sbjct: 382 CMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVL 441
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------------FILSKAVRFL------ 334
K ++ EA +++K+ S+ L D +++LI F L K + +
Sbjct: 442 SKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDE 501
Query: 335 -IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+NT++ C + A +L +++ KPD + + + +KD V N
Sbjct: 502 VTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRN- 560
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKSLGN-AKERIDELLTHA 435
EML G P T+ L + L K G+ A+E + E+++
Sbjct: 561 --EMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKG 601
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 128/301 (42%), Gaps = 39/301 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G T TYN+++ AL ++ ++KEI E +S D ++L
Sbjct: 356 GISPTMSTYNSLIHALFMEQRTDEAECMIKEIQE--------KGISP-----DAITYNIL 402
Query: 185 MDTLVKRNSVAHAYKVFL----KFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++ + A+A K FL I + + + L+H K + A K++
Sbjct: 403 INGYCR---CANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITS 459
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD + + I+ +C + + LK+M P +T +M + ++ E
Sbjct: 460 EGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEE 519
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A +++++MK D + +NT+IS R + +A ++R ++
Sbjct: 520 ARELFDEMKRRGIKPD----------------HISFNTLISGYSRRGDIKDAFRVRNEML 563
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ P T+ ++ C + ++G L L++EM+SKG+ P ++T+ L E + K +
Sbjct: 564 DTGFNPTVLTYNALVQGLC---KNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVN 620
Query: 421 L 421
+
Sbjct: 621 I 621
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 129/326 (39%), Gaps = 53/326 (16%)
Query: 106 DKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDEL--SNGY 163
++ EA +CF + + G + T ET N+++ K + W L E+ L +
Sbjct: 165 NRADEAFECF---YTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSV 221
Query: 164 VSLAAMSTVMRR----------LDTRAMSVLMDTLVKRNSVAHAY----------KVFLK 203
+ M V+ + + S + +V N++ H Y +
Sbjct: 222 YTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTT 281
Query: 204 FK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
K I S + LI G CK + + A K +EM Q G P V Y I+ +C + +
Sbjct: 282 MKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGN 341
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA----LKVYEKMKSDDCLTDTS 318
EM +KG P++ T ++HAL ++ EA ++ EK S D +T
Sbjct: 342 LDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAIT--- 398
Query: 319 FYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
YN +I+ C + A L ++ KP +T+ L +
Sbjct: 399 -----------------YNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVL 441
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVP 404
K RMK+ +L +++ S+G++P
Sbjct: 442 SKKNRMKEAD---DLFKKITSEGVLP 464
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 112/266 (42%), Gaps = 31/266 (11%)
Query: 81 HALSEDHETDVDK--VSEILRKRYPSPDKV------------VEALKCFCFTWAKTQTGY 126
HAL + TD + + EI K SPD + A K F +G
Sbjct: 369 HALFMEQRTDEAECMIKEIQEKGI-SPDAITYNILINGYCRCANAKKAFLLHDEMLASGI 427
Query: 127 MHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
T +TY +++ L K + +KE D+L S + D + L+D
Sbjct: 428 KPTKKTYTSLLHVLSKKNR-------MKEADDLFKKITSEGVLP------DAIMFNALID 474
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQ--IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
++V A+++ LK D + + F+ ++ G C+ K + A++ EM + G
Sbjct: 475 GHCSNSNVKGAFEL-LKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIK 533
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD +S+ I Y R D + EM + G P+V+T ++ L K ++ A ++
Sbjct: 534 PDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEEL 593
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKA 330
++M S D + Y +LI ++K
Sbjct: 594 LKEMVSKGMTPDDTTYFTLIEGIAKV 619
>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
Length = 321
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 116/260 (44%), Gaps = 25/260 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+L+D L K N + A+++ + + C ++ +F+ ++ CK +S A ++ M
Sbjct: 14 GILVDGLCKANRLTDAFELVEVMGERGCFP-NALVFNGIMDALCKEGRSAEAYGFIETMR 72
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G SP V+Y I+ +C+E+ + L+EM +G +P+ +T +H L K ++
Sbjct: 73 SMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVD 132
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-------------------IYNTMI 340
+AL ++ M D Y++LI L +A + YN ++
Sbjct: 133 DALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAIL 192
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
S C S A KL +++ PD T + C R+ D +L L+++M S
Sbjct: 193 SWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALL---LLQQMKSA 249
Query: 401 GIVPQESTHKMLAEELEKKS 420
G+ P+E + L + L +
Sbjct: 250 GLAPREVIYNTLIDALNRAG 269
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/269 (19%), Positives = 108/269 (40%), Gaps = 37/269 (13%)
Query: 89 TDVDKVSEILRKRYPSPDKVV------------EALKCFCFTWAKTQTGYMHTPETYNAM 136
TD ++ E++ +R P+ +V + + + F G T TYN +
Sbjct: 27 TDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYGFIETMRSMGVSPTIVTYNLL 86
Query: 137 VEALGKSKKFGLMWELVKEI----------------------DELSNGYVSLAAMSTVMR 174
++ K +K E+++E+ ++ + AM+
Sbjct: 87 IDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKI 146
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQ 232
RLD + L+D L + +A AY + ++ C+ ++ ++ CK + + A
Sbjct: 147 RLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVP-KPGCYNAILSWLCKGSRINEAH 205
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
K K M G PD +++ + YCR L++M+ G P + ++ AL
Sbjct: 206 KLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDAL 265
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
+A ++ EA ++ ++M S ++ Y+
Sbjct: 266 NRAGRVSEAYRLLQEMISRGLSPNSRTYA 294
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 23/179 (12%)
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M EKGC P+V+T I++ L KA ++ +A ++ E M C + ++ ++ L K R
Sbjct: 1 MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGR 60
Query: 333 -------------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
+ YN +I C + AL++ Q++ +P+ T+
Sbjct: 61 SAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
L C ++ D L L R M K I + L + L + L A +DE+
Sbjct: 121 FLHGLCKYGKVDD---ALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEM 176
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 86/217 (39%), Gaps = 22/217 (10%)
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M + G P V++ ++ C+ ++ M E+GC P+ + +M AL K +
Sbjct: 1 MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGR 60
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLI--FI----LSKAVRFL-------------IYNT 338
EA E M+S Y+ LI F L +A+ L YNT
Sbjct: 61 SAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+ C + +AL L + + E + D + + C ++ + +L+ EM
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAE---AYSLLDEME 177
Query: 399 SKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA 435
+ G VP+ + + L K S N ++ + +T +
Sbjct: 178 NSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGS 214
>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 131/283 (46%), Gaps = 30/283 (10%)
Query: 179 RAMSVLMDTLV-----KRN-SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQ 232
R +V+ +TL+ K N +A AYK + K IS + ++ LIH +++D A+
Sbjct: 323 RPSAVIYNTLIDGFCNKGNLDMASAYKDEM-LKKGISPTMSTYNSLIHALFMEQRTDEAE 381
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+KE+ + G SPD ++Y I YCR + +K EM G KP+ T T ++H L
Sbjct: 382 CMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVL 441
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------------FILSKAVRFL------ 334
K ++ EA +++K+ S+ L D +++LI F L K + +
Sbjct: 442 SKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDE 501
Query: 335 -IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+NT++ C + A +L +++ KPD + + + +KD V N
Sbjct: 502 VTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRN- 560
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKSLGN-AKERIDELLTHA 435
EML G P T+ L + L K G+ A+E + E+++
Sbjct: 561 --EMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKG 601
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 129/326 (39%), Gaps = 53/326 (16%)
Query: 106 DKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDEL--SNGY 163
++ EA +CF + + G + T ET N+++ K + W L E+ L +
Sbjct: 165 NRADEAFECF---YTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSV 221
Query: 164 VSLAAMSTVMRR----------LDTRAMSVLMDTLVKRNSVAHAY----------KVFLK 203
+ M V+ + + S + +V N++ H Y +
Sbjct: 222 YTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTT 281
Query: 204 FK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
K I S + LI G CK + + A K +EM Q G P V Y I+ +C + +
Sbjct: 282 MKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGN 341
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA----LKVYEKMKSDDCLTDTS 318
EM +KG P++ T ++HAL ++ EA ++ EK S D +T
Sbjct: 342 LDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAIT--- 398
Query: 319 FYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
YN +I+ C + A L ++ KP +T+ L +
Sbjct: 399 -----------------YNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVL 441
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVP 404
K RMK+ +L +++ S+G++P
Sbjct: 442 SKKNRMKEAD---DLFKKITSEGVLP 464
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 128/301 (42%), Gaps = 39/301 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G T TYN+++ AL ++ ++KEI E +S D ++L
Sbjct: 356 GISPTMSTYNSLIHALFMEQRTDEAECMIKEIQE--------KGISP-----DAITYNIL 402
Query: 185 MDTLVKRNSVAHAYKVFL----KFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++ + A+A K FL I + + + L+H K + A K++
Sbjct: 403 INGYCR---CANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITS 459
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD + + I+ +C + + LK+M P +T +M + ++ E
Sbjct: 460 EGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEE 519
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A +++++MK D + +NT+IS R + +A ++R ++
Sbjct: 520 ARELFDEMKRRGIKPD----------------HISFNTLISGYSRRGDIKDAFRVRNEML 563
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ P T+ ++ C + ++G L L++EM+SKG+ P ++T+ L E + K +
Sbjct: 564 DTGFNPTVLTYNALVQGLC---KNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVN 620
Query: 421 L 421
+
Sbjct: 621 I 621
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 113/266 (42%), Gaps = 31/266 (11%)
Query: 81 HALSEDHETDVDK--VSEILRKRYPSPDKV------------VEALKCFCFTWAKTQTGY 126
HAL + TD + + EI K SPD + A K F +G
Sbjct: 369 HALFMEQRTDEAECMIKEIQEKGI-SPDAITYNILINGYCRCANAKKAFLLHDEMLASGI 427
Query: 127 MHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
T +TY +++ L K + +KE D+L S + V+ + L+D
Sbjct: 428 KPTKKTYTSLLHVLSKKNR-------MKEADDLFKKITSEGVLPDVI------MFNALID 474
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQ--IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
++V A+++ LK D + + F+ ++ G C+ K + A++ EM + G
Sbjct: 475 GHCSNSNVKGAFEL-LKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIK 533
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD +S+ I Y R D + EM + G P+V+T ++ L K ++ A ++
Sbjct: 534 PDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEEL 593
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKA 330
++M S D + Y +LI ++K
Sbjct: 594 LKEMVSKGMTPDDTTYFTLIEGIAKV 619
>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
Length = 729
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 105/236 (44%), Gaps = 27/236 (11%)
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQI--------FDVLIHGWCKTRKSDYAQKAMKEM 238
T+V N++ + Y + +D L S + F+ LI C + A +M
Sbjct: 129 TVVTYNTMVNGYCRAGRIEDARRLISGMPFPPDTFTFNPLIRALCVRGRVPDALAVFDDM 188
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
G SP V+Y+ ++ C+ +R+ L EM+ KGC+P ++T ++++A+ +
Sbjct: 189 LHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDV 248
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTM 339
EAL + + S C D Y+ ++ L + R+ + +NT+
Sbjct: 249 DEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTI 308
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
++S C + A+K+ + E C PD T++ L C R+ D + +L+ ++
Sbjct: 309 VTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLK 364
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 137/347 (39%), Gaps = 47/347 (13%)
Query: 96 EILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE 155
IL KR S +V +A + F G T TYN MV ++ + L+
Sbjct: 102 NILIKRLCSGGRVADAERVF------ATLGASATVVTYNTMVNGYCRAGRIEDARRLISG 155
Query: 156 IDELSNGYV----------------SLAAMSTVMRRLDTRAM---SVLMDTLVKRNSVAH 196
+ + + +LA ++ R + ++ S+L+D K +
Sbjct: 156 MPFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQ 215
Query: 197 AYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI 254
A + ++ K C ++VLI+ C D A + ++ HG PD V+YT +
Sbjct: 216 AMVLLDEMRAKGC-EPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVL 274
Query: 255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
+ C + +++V+ EM C P +T ++ +L + + A+KV + M C+
Sbjct: 275 KSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCI 334
Query: 315 TDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
D YSS++ L R +A++L +++ CKPD +
Sbjct: 335 PDIVTYSSILDGLCDVGRV----------------DDAVELLSRLKSYGCKPDTIAYTTV 378
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
LK C ++ + LM EM+ P E T + L +K L
Sbjct: 379 LKGLCSIEQWEHAE---ELMAEMVCSDCPPDEVTFNTVIASLCQKGL 422
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 129/310 (41%), Gaps = 38/310 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY ++++L S+++ KE++EL A M++ D + ++ +L ++
Sbjct: 269 TYTPVLKSLCGSERW-------KEVEEL------FAEMASNKCAPDEVTFNTIVTSLCQQ 315
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
V A KV + CI + ++ G C + D A + + + +G PD ++
Sbjct: 316 GLVDRAIKVVDHMSEHGCIP-DIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIA 374
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
YT ++ C + + + + EM C P +T V+ +L + + A+KV E+M
Sbjct: 375 YTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMS 434
Query: 310 SDDCLTDTSFYSSLIFILSK------AVRFL-------------IYNTMISSACVRSEEG 350
+ C D Y+S+I L A+ L +NT++ C
Sbjct: 435 ENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWE 494
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
+A +L + C PD T + C K + + L +M E G +P +ST+
Sbjct: 495 DAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAE---NGCIPNQSTYN 551
Query: 411 MLAEELEKKS 420
++ + L K
Sbjct: 552 IVVDALLKAG 561
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 24/226 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ L+ G C + + A++ M M PD ++ I C++ + TLK M
Sbjct: 480 FNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMA 539
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
E GC P+ T IV+ AL KA + EALK+ M + D Y+++I ++KA +
Sbjct: 540 ENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNG--TPDLITYNTVISNITKAGKME 597
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ Y ++ C A+++ ++++ PD + L
Sbjct: 598 EALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDIL 657
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
C R + ++ M+S G +P EST+ +L E L + L
Sbjct: 658 LGFCQNWRTD---IAIDCFAHMVSSGCMPDESTYIILLEALAYECL 700
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 87/389 (22%), Positives = 158/389 (40%), Gaps = 72/389 (18%)
Query: 87 HETDVDKVSEILRKRYPS----PDKVV--EALKCFCFT--WAKTQTGYMH------TPE- 131
+E DVD+ IL PS PD V LK C + W + + + P+
Sbjct: 244 NEGDVDEALNILSD-LPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDE 302
Query: 132 -TYNAMVEALGKSKKFGLMWELVKEIDELS---------------NGYVSLAAMSTVMRR 175
T+N +V +L + GL+ +K +D +S +G + + +
Sbjct: 303 VTFNTIVTSLCQQ---GLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVEL 359
Query: 176 L----------DTRAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWC 223
L DT A + ++ L HA ++ + DC F+ +I C
Sbjct: 360 LSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPP-DEVTFNTVIASLC 418
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
+ D A K +++M ++G +PD V+Y I+ C E+ L +Q GCKP ++
Sbjct: 419 QKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIV 478
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF------ILSKAVRFL--- 334
T ++ L + +A ++ M DC D + ++++I +L +A+ L
Sbjct: 479 TFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIM 538
Query: 335 ----------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
YN ++ + + ALKL + + PD T+ + +M
Sbjct: 539 AENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGT--PDLITYNTVISNITKAGKM 596
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLA 413
++ L+L+R M+S G+ P T++ LA
Sbjct: 597 EEA---LDLLRVMVSNGLSPDTITYRSLA 622
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 9/151 (5%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF----KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
++++D L+K A K+ D I+ ++ +I K K + A ++
Sbjct: 551 NIVVDALLKAGKTQEALKLLSGMTNGTPDLIT-----YNTVISNITKAGKMEEALDLLRV 605
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M +G SPD ++Y CRE + L +Q+ G P ++ + +
Sbjct: 606 MVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWR 665
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILS 328
A+ + M S C+ D S Y L+ L+
Sbjct: 666 TDIAIDCFAHMVSSGCMPDESTYIILLEALA 696
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 112/247 (45%), Gaps = 23/247 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ +++G CK + + A+K EM + G +PD VSY + YC+ + EM
Sbjct: 84 FNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMT 143
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
++G P V+T T ++HA KA + +A+ + +M+ + +++LI K
Sbjct: 144 QRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLD 203
Query: 330 ----AVR----------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
AV + YN +I+ C A +L +++E KPD T++ +
Sbjct: 204 DALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTII 263
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTH 434
C + D LN ++ML KG++P T+ L L E+K L +A E + +L
Sbjct: 264 SGYCKVGNL-DSAFQLN--QKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQL 320
Query: 435 ATEQRTF 441
+ F
Sbjct: 321 GVQPDEF 327
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 134/303 (44%), Gaps = 19/303 (6%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
YNA++ K + L EL++E M + D S ++ K
Sbjct: 224 YNALINGYCKLGRMDLARELIRE-------------MEAKRVKPDVVTYSTIISGYCKVG 270
Query: 193 SVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
++ A+++ K K + + + LI G C+ ++ + A + + M Q G PD +YT
Sbjct: 271 NLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYT 330
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
I+ +C+E + K EM KG P V+T +++++ L K+ + EA ++ K+ +
Sbjct: 331 TLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHE 390
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
D + D Y +L+ SKA F ++ C++ A K+ Q + + + K D +
Sbjct: 391 DPVPDNIKYDALMLCCSKA-EFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVY 449
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDE 430
+ + C ++ L+ ++ML G P ++ L L E+ + A I +
Sbjct: 450 SILIHGHCRGGNVRK---ALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQD 506
Query: 431 LLT 433
LLT
Sbjct: 507 LLT 509
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 130/312 (41%), Gaps = 42/312 (13%)
Query: 132 TYNAMVEALGKSKKF----GLMWELVKE--------IDELSNGYVSLAAMSTVMRRLDTR 179
T+N+MV L K+ + + E+V+E + L +GY + + +
Sbjct: 83 TFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEM 142
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKS 228
L+ +V S+ HA + ++L +Q+ F LI G+CK
Sbjct: 143 TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFL 202
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A A++EM + G P V Y I YC+ ++EM+ K KP V+T + +
Sbjct: 203 DDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTI 262
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
+ K + A ++ +KM L D YSSLI R L ++ AC E
Sbjct: 263 ISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI-------RGLCEEKRLNDACELFE 315
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
N L+L +PD T+ + C + ++ L+L EM+ KG++P T
Sbjct: 316 --NMLQL-------GVQPDEFTYTTLIDGHCKEGNVEK---ALSLHDEMIRKGVLPDVVT 363
Query: 409 HKMLAEELEKKS 420
+ +L L K +
Sbjct: 364 YSVLINGLSKSA 375
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 96/226 (42%), Gaps = 26/226 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++L+ C + + A + +M G +P+ V+Y + +CR + + + M+
Sbjct: 13 YNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMR 72
Query: 275 EKG-CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
E+G KP+++T +++ L KA ++ A KV+++M + D
Sbjct: 73 EEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDV---------------- 116
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ YNT++S C +L + ++ + PD T + C ++ + ++
Sbjct: 117 VSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQ 176
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQR 439
MRE +G+ E T L + KK +D+ L E R
Sbjct: 177 MRE---RGLRMNEVTFTALIDGFCKKGF------LDDALLAVEEMR 213
>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
Length = 583
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/329 (20%), Positives = 136/329 (41%), Gaps = 40/329 (12%)
Query: 127 MHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
+++P+ ++N +++ + + + ELV+ ++E DT ++L
Sbjct: 246 VYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSP-------------DTVTHNIL 292
Query: 185 MDTLVKRNSVAHAYKVFLKF-KDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
+D L + N V+ ++V + +D + + + + F +I G+CK K + A +M G
Sbjct: 293 VDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASG 352
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
P+ V+Y I Y + D ++M C P V+T + ++ + Q+ +AL
Sbjct: 353 IMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDAL 412
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSK--------------------AVRFLIYNTMISS 342
+++ M + +S +I L K A + IYN +I
Sbjct: 413 RIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDV 472
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C + A +R+ +EE C+PD T+ + C K R+ + ++ EM+ G
Sbjct: 473 LCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIM---FFHEMVEAGC 529
Query: 403 VPQESTHKMLAEELEKKSLGNAKERIDEL 431
P T L K + N + + L
Sbjct: 530 SPDSITVNCFISCLLKAGMPNEVDHVMRL 558
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQ 232
R++ A + LM +L+ R V +F ++ S + F+V+I G C+ + A
Sbjct: 212 RVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKAL 271
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG-CKPSVITCTIVMHA 291
+ ++ M + G SPD V++ ++ CR + + L+ +Q G C P+V+T T V+
Sbjct: 272 ELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISG 331
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN 351
KA ++ +A+ VY M + + +T + YN +I+ + G+
Sbjct: 332 YCKAGKLEDAMAVYNDMVASGIMPNT----------------VTYNVLINGYGKVGDLGS 375
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A+++ Q++ C PD T + + C ++ D L + +M I P T +
Sbjct: 376 AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDA---LRIWSDMAQHRIQPNVYTFSI 432
Query: 412 LAEELEKKS 420
+ L K++
Sbjct: 433 IIHSLCKQN 441
>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
Length = 789
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 107/245 (43%), Gaps = 36/245 (14%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFK--DCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D ++++D L+++N + A V+ + +C+ + F +LI G CK+ A
Sbjct: 160 DVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLP-NVATFSILIDGLCKSGNVKDALHL 218
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA--- 291
EM Q G PD +Y I CR K +M++ G P +TC +++
Sbjct: 219 FDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCM 278
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----LIYNTMISSACVRS 347
L++ + + L+++EK D + D YS LI L +A R+ L+Y MI
Sbjct: 279 LDRVDEAFSLLRLFEK---DGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMI------- 328
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
ED+ KPD + +K +++D + +LN EM G+VP
Sbjct: 329 -------------EDNVKPDVYLYTIMMKGLAEAGKVRDALELLN---EMTESGVVPDTV 372
Query: 408 THKML 412
+ +L
Sbjct: 373 CYNVL 377
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 99/245 (40%), Gaps = 20/245 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D V++ L + V AY++F K KD + + L++G+C + D A +
Sbjct: 230 DAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLL 289
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ + G+ D Y+C I R K + V ++M E KP V TI+M L +A
Sbjct: 290 RLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEA 349
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ +AL++ +M + DT + YN +I C A L
Sbjct: 350 GKVRDALELLNEMTESGVVPDT----------------VCYNVLIKGFCDMGLLSEARSL 393
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ +I C P+ +T++ + C +D + N EM G P T L +
Sbjct: 394 QLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFN---EMEKLGCYPSAVTFNSLIDG 450
Query: 416 LEKKS 420
L K
Sbjct: 451 LCKTG 455
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/340 (18%), Positives = 134/340 (39%), Gaps = 52/340 (15%)
Query: 106 DKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVS 165
D+V EA F + GY+ Y+ ++ L ++K++ + L +++ E +
Sbjct: 280 DRVDEA---FSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDN----- 331
Query: 166 LAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCK 224
+ D +++M L + V A ++ + + + + ++VLI G+C
Sbjct: 332 --------VKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCD 383
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
A+ E+ +H P+ +Y+ I CR R EM++ GC PS +T
Sbjct: 384 MGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVT 443
Query: 285 CTIVMHALEKAKQIYEALKVYEKM-------------KSDDCLTDTSFYSSLI------F 325
++ L K Q+ +A ++ KM + + D++ ++
Sbjct: 444 FNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSG 503
Query: 326 ILSKAVRFLI-------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
++ KA R L+ YN +++ C A KL ++++ PD T+
Sbjct: 504 LIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYG 563
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ +R +D V + +M G P + ++ +
Sbjct: 564 TLINGLLRFQREEDAYKVFD---QMEKNGCTPDAAVYRTM 600
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 117/276 (42%), Gaps = 28/276 (10%)
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
++ D L+ +N + + K+ I + + F VLI + K +D A + M
Sbjct: 96 LITDLLINQNGLELYCQTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDF 155
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTL-KEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
+PD +Y ++ +K+F + T+ M + C P+V T +I++ L K+ + +
Sbjct: 156 DCTPDVYTYNMILDVLI-QKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKD 214
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMIS 341
AL ++++M L D Y +I L ++ R F+ N +++
Sbjct: 215 ALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLN 274
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C+ A L + E+D D ++ ++ KR +D L L R+M+
Sbjct: 275 GFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQL---LYRKMIEDN 331
Query: 402 IVPQESTHKMLAEELEKKSLGNAKERIDELLTHATE 437
+ P + ++ + L + G ++ + ELL TE
Sbjct: 332 VKPDVYLYTIMMKGLAEA--GKVRDAL-ELLNEMTE 364
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 16/146 (10%)
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
L S ++ C + A + + ++ G +P +Y + +C+ +F
Sbjct: 487 LDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKL 546
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
+EMQ KG P +T +++ L + ++ +A KV+++M+ + C D +
Sbjct: 547 FREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAA----------- 595
Query: 330 AVRFLIYNTMISSACVRSEEGNALKL 355
+Y TM++ C R E A L
Sbjct: 596 -----VYRTMMTWMCRRMELPRAFSL 616
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 86/220 (39%), Gaps = 32/220 (14%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
+ + S+L+ + + A ++F + + S + F+ LI G CKT + + A
Sbjct: 405 NVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLF 464
Query: 236 KEMFQHGFSP--------------DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
+M + G +P D S +E C K L ++ + G P
Sbjct: 465 YKM-EIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPG 523
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMIS 341
+ T I+++ K A K++ +M+ DT Y +LI + +RF
Sbjct: 524 IYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLI---NGLLRF-------- 572
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
E +A K+ ++E++ C PD + + C +
Sbjct: 573 -----QREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRR 607
>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Vitis vinifera]
Length = 725
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 135/325 (41%), Gaps = 48/325 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA + + H TY A++ L ++ G MW+ ++E+ S + A +S +++ L
Sbjct: 111 FKWAGKRRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVR-STCVIGPADLSEIVKVL 169
Query: 177 D-----TRAMSVLMDTLVKR--------NS-------------VAHAYKVFLKFKDCISL 210
+A+S+ ++ NS V Y DC+
Sbjct: 170 GKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLP- 228
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
+ + LI + K + D A EM ++G P YT + Y + K +
Sbjct: 229 DTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLV 288
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
+EM+EKGC +V T T ++ + KA ++ EA ++ M + C D ++LI +L KA
Sbjct: 289 QEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKA 348
Query: 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK-RMKDGML 389
R +A+KL +++E C P+ T+ +K K R + L
Sbjct: 349 GRL----------------ADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFL 392
Query: 390 VLNLMREMLSKGIVPQESTHKMLAE 414
M+E G+VP T+ +L +
Sbjct: 393 WYEKMKE---NGVVPSSFTYSILID 414
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 118/273 (43%), Gaps = 40/273 (14%)
Query: 123 QTGYMHTPETYNAMVEALGKSKK----FGLMWELVKE--------IDELSNGYVSLAAMS 170
+ G T TY +++ +GK+ K + + ++KE I+ L N ++
Sbjct: 293 EKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLA 352
Query: 171 TV------MRRLDTRAMSVLMDTLVKR--NSVAHAYKVFLKFK----DCISLSSQIFDVL 218
M L V +T++K S A A + FL ++ + + SS + +L
Sbjct: 353 DAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSIL 412
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
I G+CKT + + A ++EM + GF+P +Y I + K + + +E++E
Sbjct: 413 IDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCG 472
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNT 338
S +++ L K ++ EA+ ++ +MK C D Y++L +S VR + +
Sbjct: 473 YSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNAL---MSGMVRVGMTD- 528
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
A L + +EE+ C PD +H
Sbjct: 529 ------------EAHSLLRTMEENGCTPDLNSH 549
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 93/208 (44%), Gaps = 14/208 (6%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G+ P Y +++ ALGK+K++ EL +E+ E + GY S R +
Sbjct: 434 EKGFAPCPAAYCSLINALGKAKRYEAANELFQELRE-NCGYSS------------ARVYA 480
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
V++ L K ++ A +F + K + ++ L+ G + +D A ++ M ++
Sbjct: 481 VMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEEN 540
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G +PD S+ + + R + M+ KP V++ V+ L +A EA
Sbjct: 541 GCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEA 600
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSK 329
K+ ++M S D YSS++ + K
Sbjct: 601 AKLMKEMNSKGFEYDLITYSSILEAVGK 628
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 109/247 (44%), Gaps = 21/247 (8%)
Query: 90 DVDKVSEILRKRYPSPDKVVEALKCFCFTWAKT--QTGYMHTPETYNAMVEALGKSKKFG 147
+V + +++ + S + EA F W + + G + + TY+ +++ K+ +
Sbjct: 369 NVVTYNTVIKALFESKARASEA-----FLWYEKMKENGVVPSSFTYSILIDGFCKTNRVE 423
Query: 148 LMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-D 206
L++E+DE G+ A A L++ L K A ++F + + +
Sbjct: 424 KALLLLEEMDE--KGFAPCPA-----------AYCSLINALGKAKRYEAANELFQELREN 470
Query: 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
C S++++ V+I K + A EM + G +PD +Y + R +
Sbjct: 471 CGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEA 530
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
L+ M+E GC P + + I+++ + A++++ +MK+ D Y++++
Sbjct: 531 HSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGC 590
Query: 327 LSKAVRF 333
LS+A F
Sbjct: 591 LSRAGMF 597
>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
Length = 616
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 143/344 (41%), Gaps = 56/344 (16%)
Query: 100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI--D 157
+R PD ++ F WA Q GY H +YN +++ L KS ++ K++
Sbjct: 2 RRSSRPDLAIQF-----FDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHS 56
Query: 158 ELSNGYVSLAAM-------STVMRRL-------------DTRAMSVLMDTLVKRNSVAHA 197
S V+ + MR L D +VL+ L K + A
Sbjct: 57 GCSPNLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQA 116
Query: 198 YKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF--SPDGVSYTCFI 254
K+F + + ++ +I G CK+ + A++ ++EM + G +PD V+Y I
Sbjct: 117 VKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLI 176
Query: 255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
+ R R+ ++M+ G P V+TC I++ + K + EAL++ + MK +
Sbjct: 177 NAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPV 236
Query: 315 TDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
D + YN++I + CV G ++ + ++ SC PD T
Sbjct: 237 PDV----------------ITYNSIIHALCV---AGKVVEAAEILKTMSCSPDLVTFNTL 277
Query: 375 LKMCCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLAEEL 416
L C K GML L ++ EM + I+P T+ +L L
Sbjct: 278 LDGFC-----KAGMLPRALEVLEEMCRENILPDVITYTILVNGL 316
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 107/261 (40%), Gaps = 32/261 (12%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKV---------FLKFKDCISLSSQIFDVLIHGWCKTR 226
LD ++ + ++ NS+ HA V LK C S F+ L+ G+CK
Sbjct: 227 LDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMSC-SPDLVTFNTLLDGFCKAG 285
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
A + ++EM + PD ++YT + CR + Y L+E+ +G P VI T
Sbjct: 286 MLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYT 345
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF-------------ILSKAVR- 332
++ L K+ +I EA K+ ++M C T YSSL+ IL++ V
Sbjct: 346 SLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSI 405
Query: 333 -----FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
YN ++ A+ L + PD T+ + C R+++
Sbjct: 406 NMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREA 465
Query: 388 MLVLNLMREMLSKGIVPQEST 408
+L EM S+G P + T
Sbjct: 466 ---CDLADEMASRGCFPNDVT 483
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 123/304 (40%), Gaps = 39/304 (12%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+ GY+ Y ++V+ L KS + +LVKE MS R
Sbjct: 333 VRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKE-------------MSVRGCRTGVVMY 379
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF--DVLIHGWCKTRKSDYAQKAMKEMF 239
S L+ + +V A ++ + I++ +F ++++ G K A + ++
Sbjct: 380 SSLVSGYCRAGNVHKAREILAEMVS-INMVPPLFTYNIVLGGLIKDGSISKAVSLISDLV 438
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G+ PD V+Y I+ C+ R+ EM +GC P+ +T V+ L + ++
Sbjct: 439 ARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVD 498
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC--VRSEEGNALKLRQ 357
+A + +M + Y+SLI L K+ R + AC + + G + L
Sbjct: 499 DAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDR-------MDDACMVLDAMRGQGVAL-- 549
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
D + + + H R+ + M + + EM+++G +P ST K L E
Sbjct: 550 ---------DDFAYRKLIVSMSHGGRVAEAMAMYD---EMVARGFLPDGSTSKTLEEAAM 597
Query: 418 KKSL 421
S+
Sbjct: 598 SNSV 601
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 84/216 (38%), Gaps = 32/216 (14%)
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
Q G+ D SY ++ + + K++ GC P+++T I++ KA Q
Sbjct: 20 QDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAM 79
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRF-------------LIYNTMI 340
AL+ + D ++ LI L K AV+ + YNT+I
Sbjct: 80 RALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVI 139
Query: 341 SSACVRSEEGNALKLRQKIEE-----DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
S C + GN K R+ +EE PD T+ + R+++
Sbjct: 140 SGLC---KSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREA---CAFRE 193
Query: 396 EMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431
+M + GI P T +L + K G+ +E ++ L
Sbjct: 194 KMKAAGINPDVLTCNILVSGICKD--GDVEEALEIL 227
>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
gi|194702156|gb|ACF85162.1| unknown [Zea mays]
gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
Length = 567
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 106/221 (47%), Gaps = 22/221 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G C ++ A +++MF+ G PD V+YT +E C+ +++ L EM
Sbjct: 169 YNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMH 228
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
+KGC P ++T +V++ + + ++ +A++ + + S C +T Y+ ++ L A R+
Sbjct: 229 DKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWE 288
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ +N +IS C R A+++ +++ + C P+ ++ L
Sbjct: 289 DAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLL 348
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C +K++ M + L M+S+G P ++ L L
Sbjct: 349 HAFCKQKKIHKAMEFVEL---MVSRGCYPDIVSYNTLLTAL 386
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 109/241 (45%), Gaps = 20/241 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++L+ L +R V A +V + + +S ++ L+H +CK +K A + ++ M
Sbjct: 310 NMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVS 369
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD VSY + CR + L ++++KGC P +I+ V+ L KA + E
Sbjct: 370 RGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKE 429
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
AL++ ++M S D + Y+T+ S C A++ K++
Sbjct: 430 ALELLDEMTSKGLQPD----------------IITYSTIASGLCREDRIEEAVRTFCKVQ 473
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ +P + L C ++ + ++L M+S G +P EST+ +L E L +
Sbjct: 474 DMGIRPTAALYNAILLGLCKRRETHNA---IDLFAYMISSGCMPNESTYTILVEGLAYEG 530
Query: 421 L 421
L
Sbjct: 531 L 531
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 105/227 (46%), Gaps = 31/227 (13%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++++ G + + A+K M+EM G P+ V++ I CR L++M
Sbjct: 274 YNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMP 333
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ GC P+ ++ ++HA K K+I++A++ E M S C D +
Sbjct: 334 QYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPD----------------IV 377
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YNT++++ C E A++L ++++ C P ++ + + K+ L L+
Sbjct: 378 SYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEA---LELL 434
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQRTF 441
EM SKG+ P T+ +A L + ++RI+E + RTF
Sbjct: 435 DEMTSKGLQPDIITYSTIASGLCR------EDRIEEAV------RTF 469
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 22/208 (10%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+++ ++ G+C + D A++ + +M PD +Y I C L++M
Sbjct: 136 VYNAMVAGYCGAGQLDAARRLVADM---PVEPDAYTYNTLIRGLCGRGRTSNALAVLEDM 192
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+GC P V+T TI++ A K +A+K+ ++M C D
Sbjct: 193 FRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPD----------------I 236
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ YN +++ C +A++ + + C+P+ ++ LK +R +D L
Sbjct: 237 VTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAE---KL 293
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKSL 421
M EM KG P T ML L ++ L
Sbjct: 294 MEEMAHKGCPPNVVTFNMLISFLCRRGL 321
>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
Length = 413
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 25/262 (9%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQK 233
LD S LMD L K A A +VF ++ C+ + +++VLI K K D A +
Sbjct: 115 LDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMP-DTVVYNVLISCLGKQGKVDEALE 173
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
+++M + G PD +Y I+ + K M+ + P V+T +++ L+
Sbjct: 174 LLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLK 233
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------L 334
K ++ EA ++++M+++ C+ D + + +LI L+KA R
Sbjct: 234 KLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSY 293
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
IYN +IS C + +L Q + E SC PD T+ ++ + +R M + L+
Sbjct: 294 IYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITY--TILVLGFSRRGHTSM-AMELL 350
Query: 395 REMLSKGIVPQESTHKMLAEEL 416
+EM+ +G P +T+ +L L
Sbjct: 351 QEMVREGHTPALATYNVLIRSL 372
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 97/255 (38%), Gaps = 27/255 (10%)
Query: 182 SVLMDTLV----KRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
+V DTLV K + A VF + + + + LIH C+ A++ +
Sbjct: 47 AVSFDTLVIFLCKMSRATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLH 106
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M H F D +Y+ ++ + K MQ+ GC P + +++ L K
Sbjct: 107 HMTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQG 166
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYN 337
++ EAL++ E M + D Y+ +I +LS R+ + YN
Sbjct: 167 KVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYN 226
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
T+++ A L +++ + C PD T + RM+D L +
Sbjct: 227 TLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMED---ALEQSARL 283
Query: 398 LSKGIVPQESTHKML 412
+ G VP + L
Sbjct: 284 VKMGHVPNSYIYNAL 298
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 16/199 (8%)
Query: 128 HTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
H+P+ TYN ++ L K ++ +L E+ + M L T L+
Sbjct: 218 HSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQA-----------NKCMPDLTT--FGTLI 264
Query: 186 DTLVKRNSVAHAYKVFLKFKDCISL-SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
DTL K + A + + + +S I++ LI G+C++ + D + ++M +
Sbjct: 265 DTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCF 324
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD ++YT + + R L+EM +G P++ T +++ +L A Q+ +A +
Sbjct: 325 PDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTL 384
Query: 305 YEKMKSDDCLTDTSFYSSL 323
+++M + D YS+L
Sbjct: 385 FKEMIAKGFNPDMQTYSAL 403
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGF-SPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ LI G+CK D A + + Q G P+ VS+ + C+ +EM
Sbjct: 14 YNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEM 73
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
G + V C ++H + + +A ++ M + + D YS L+ L KA R
Sbjct: 74 LGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGKAGR- 132
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
AL++ +++ C PD + L C K+ D L L
Sbjct: 133 ---------------AAKALEVFSNMQKAGCMPDTVVY-NVLISCLGKQGKVDE--ALEL 174
Query: 394 MREMLSKGIVPQESTHKMLAEEL 416
+ +M KGI+P T+ ++ + L
Sbjct: 175 LEDMNRKGIMPDCRTYNIVIDVL 197
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 85/232 (36%), Gaps = 25/232 (10%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKE----------------IDELSN----- 161
+ G M YN ++ LGK K EL+++ ID LS+
Sbjct: 145 KAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYE 204
Query: 162 -GYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVL 218
Y M D + L++ L K A +F ++ C+ F L
Sbjct: 205 KAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMP-DLTTFGTL 263
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
I K + + A + + + G P+ Y I +CR K ++M E C
Sbjct: 264 IDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSC 323
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
P IT TI++ + A+++ ++M + + Y+ LI LS A
Sbjct: 324 FPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMA 375
>gi|156070795|gb|ABU45207.1| unknown [Solanum bulbocastanum]
Length = 405
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 121/267 (45%), Gaps = 28/267 (10%)
Query: 184 LMDTLVKRNSVA----HAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEM 238
+ ++++ VA HA K++ + D + S I F+VL+ +++ D + E+
Sbjct: 104 FLSSIIRSYGVAGMFDHALKIYHQMDDLGTPRSAISFNVLLSACVRSKLYDRVPQLFDEI 163
Query: 239 -FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
++GF PD VSY I YC LKEM+EKG + + +T T ++H+ K ++
Sbjct: 164 PVKYGFLPDKVSYGILIRSYCEMGSPEMAMERLKEMEEKGVEITSVTFTTILHSFYKKRK 223
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILS----KAVRFLI--------------YNTM 339
EA KV+ +M + C D Y+ I + + V+ LI YN +
Sbjct: 224 SDEAEKVWNEMVNRGCGPDVGAYNVKIMNIQGGDPEGVKALIEEMNDAGLKPDTISYNYL 283
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
++ C A K+ +E++ C P+ T + C K R + G V +E +
Sbjct: 284 MTCYCRNELIDEAQKVYDDLEKNGCNPNAATFRTLIFYLCKKGRFETGYKVF---KESVK 340
Query: 400 KGIVPQESTHKMLAEELEKKS-LGNAK 425
+P T K L E L KKS L +AK
Sbjct: 341 VQKIPDFDTLKYLVEGLAKKSKLKDAK 367
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 86/361 (23%), Positives = 143/361 (39%), Gaps = 79/361 (21%)
Query: 106 DKVV-EALKCFCFTWAKTQTGYMHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNG 162
DK+V EAL F + AK +P+ TYN++++ L ++ W KE L N
Sbjct: 248 DKLVNEALDIFSYMKAKR-----ISPDIFTYNSLIQGLCNFRR----W---KEASALLNE 295
Query: 163 YVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK------DCISLSS---- 212
SL M + +VL+D + K V+ A VF D ++ SS
Sbjct: 296 MTSLNIMPNIF------TFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYG 349
Query: 213 -----------QIFD---------------VLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
++FD +LI G+CK ++ D A++ EM G +PD
Sbjct: 350 YSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPD 409
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+Y I C+ R+ K M G P + T ++++ K + +A +++
Sbjct: 410 NVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFR 469
Query: 307 KMKSDDCLTDTSFYSSLI-------------------FILSKAVRFLIYNTMISSACVRS 347
M+S D + Y+ LI F+ IY T+I++ C
Sbjct: 470 VMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEG 529
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
AL+ + +E D C PD ++ ++ + KD L+ EM +G V +
Sbjct: 530 LLDEALEAFRNMEGDGCPPDEFSYNVIIRGFL---QYKDESRAAQLIGEMRDRGFVAEAG 586
Query: 408 T 408
T
Sbjct: 587 T 587
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 134/312 (42%), Gaps = 38/312 (12%)
Query: 151 ELVKEIDELSNGYVSLAAMSTVMRRL----DTRAMSVLMDTLVKRNSVAHAYKVFLK-FK 205
+L+ I ++ Y ++ ++S M D +S+L+D V A+ VF K K
Sbjct: 99 KLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIK 158
Query: 206 DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
+ + F+ LI+G CK K A + + G P +YT I C+ +
Sbjct: 159 LGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTA 218
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
K+M+E GC+P+V+T I++ +L K K + EAL ++ MK+ D Y+SLI
Sbjct: 219 AAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQ 278
Query: 326 ILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
L R+ +N ++ + C + A + + + E +P
Sbjct: 279 GLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEP 338
Query: 367 DCETHAR-----SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK-KS 420
D T++ SL+M + R L M++KG P ++ +L + K K
Sbjct: 339 DVVTYSSLMYGYSLRMEIVEAR--------KLFDAMITKGCKPDAFSYNILIKGYCKAKR 390
Query: 421 LGNAKERIDELL 432
+ AK+ +E++
Sbjct: 391 IDEAKQLFNEMI 402
>gi|356573388|ref|XP_003554843.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g61360-like [Glycine max]
Length = 491
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/374 (21%), Positives = 156/374 (41%), Gaps = 52/374 (13%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
V IL + + S ++AL+ F ++ + + +P + N + L + + F W L+
Sbjct: 54 VENILGRLFASHSNGLKALEFFNYSLVHSH--FPLSPASLNMTLHILTRMRYFDKAWVLL 111
Query: 154 KEIDELSNGYVSLAAMSTVM--------------------------RRLDTRAMSVLMDT 187
++I ++L +MS V+ R T +VL+
Sbjct: 112 RDIARTHPSLLTLKSMSIVLSKIAKFQSFEDTLDGFRRMEDEVFVGREFGTDEFNVLLKA 171
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+ + A VF K S +++ ++L+ G+ ++ + EM + GFSPDG
Sbjct: 172 FCTQRQMKEARSVFAKLVPRFSPNTKSMNILLLGFKESGNVTSVELFYHEMVRRGFSPDG 231
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
V++ I+ YC++ F L+EM+ + P++ T T ++H + +A +++++
Sbjct: 232 VTFNIRIDAYCKKGCFGDALRLLEEMERRNVVPTIETITTLIHGAGLVRNKDKAWQLFKE 291
Query: 308 MKSDDCLTDTSFYSSLIFILSKA-------------------VRFLIYNTM-ISSACVRS 347
+ S + + D Y++LI L + + + Y+TM + R
Sbjct: 292 IPSRNMVADAGAYNALITALVRTRDIESASSLMDEMVEKCIELDSVTYHTMFLGFMRSRG 351
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
EG + KL QK+ + + P T +K C R+ L + L + ++ KG P
Sbjct: 352 IEGVS-KLYQKMTQSNFVPKTRTVVMLMKYFCQNYRLD---LSVCLWKYLVEKGYCPHAH 407
Query: 408 THKMLAEELEKKSL 421
+L L + L
Sbjct: 408 ALDLLVTGLCARGL 421
>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
Length = 698
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 23/233 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ +I G+C+ A K ++E + G P+ +SYT I +C + L EM
Sbjct: 224 FNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMM 283
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF------ILS 328
+G P +IT ++H L + Q+ +AL V EKM + D + Y+ LI +LS
Sbjct: 284 GRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLS 343
Query: 329 KAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
A L IY T+I + +A K+ + +EE +C PD + +
Sbjct: 344 AAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKAC-PDIVAYNVMI 402
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
K C MK+ + ++ MR+ G +P E T+ L + KK +A R+
Sbjct: 403 KGYCKFGMMKEAVTCMSSMRK---AGCIPDEFTYTTLVDGYAKKGDISASLRL 452
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 98/244 (40%), Gaps = 21/244 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + L+ LV V A V K + + + I++VLI G CK R A+ +
Sbjct: 290 DMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLL 349
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM + PD YT I+ + R + M+EK C P ++ +++ K
Sbjct: 350 EEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKAC-PDIVAYNVMIKGYCKF 408
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ EA+ M+ C+ D Y T++ + + +L+L
Sbjct: 409 GMMKEAVTCMSSMRKAGCIPDE----------------FTYTTLVDGYAKKGDISASLRL 452
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ + CKP+ T+A + C + D +L +M S+G+ P + +L
Sbjct: 453 LCDMMKRRCKPNIFTYA---SLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGS 509
Query: 416 LEKK 419
L KK
Sbjct: 510 LFKK 513
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 93/219 (42%), Gaps = 22/219 (10%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
V++ G C + + + ++ + G P V Y I+ YCR D + L EM+ K
Sbjct: 86 VMVRGLCLEGRVEEGRGLIEARWGEGCVPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETK 145
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA------ 330
G P+V+T ++H L + + + + +M++ + Y+++I L K
Sbjct: 146 GIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQA 205
Query: 331 ---------VRF----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
RF + +NTMI+ C + ALKL ++ +P+ ++ +
Sbjct: 206 SDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHG 265
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C + + M+ +L+ EM+ +G P T L L
Sbjct: 266 FCVR---GEAMVASDLLVEMMGRGHTPDMITLGALIHGL 301
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 104/251 (41%), Gaps = 23/251 (9%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
+ ++VLI G+C+ + EM G P V+Y I R+ D KV+ L
Sbjct: 115 GAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKVESLL 174
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF----- 325
EM+ +G P+V V++AL K + +A + +M D ++++I
Sbjct: 175 GEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCRE 234
Query: 326 --------ILSKAVRF------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+L +A+R L Y +I CVR E A L ++ PD T
Sbjct: 235 GDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITL 294
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDE 430
+ ++ D ++V M E + ++P + + +L L +K+ L AK ++E
Sbjct: 295 GALIHGLVVSGQVNDALIVREKMAE---RQVMPDANIYNVLISGLCKKRMLSAAKNLLEE 351
Query: 431 LLTHATEQRTF 441
+L + F
Sbjct: 352 MLEQKVQPDKF 362
>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Glycine max]
Length = 725
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 20/229 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D ++++D LVK+ + A ++ + + + +LI+G+CK + + A + +
Sbjct: 376 DAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIV 435
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M G S + V Y C I C++ + + EM KGCKP + T +++ L K
Sbjct: 436 NSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKN 495
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ EAL +Y M + + +T + YNT++ + +R A KL
Sbjct: 496 HKMEEALSLYHDMFLEGVIANT----------------VTYNTLVHAFLMRDSIQQAFKL 539
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
++ C D T+ +K C ++ G L L EML KGI P
Sbjct: 540 VDEMLFRGCPLDNITYNGLIKALCKTGAVEKG---LGLFEEMLGKGIFP 585
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 102/244 (41%), Gaps = 20/244 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + L++ L K + + A ++ F + + ++ ++ L+H + A K +
Sbjct: 481 DIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLV 540
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM G D ++Y I+ C+ K +EM KG P++I+C I++ L +
Sbjct: 541 DEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRT 600
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ +ALK + M D + YN++I+ C A L
Sbjct: 601 GKVNDALKFLQDMIHRGLTPD----------------IVTYNSLINGLCKMGHVQEASNL 644
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
K++ + +PD T+ + CH+ D L L+ + + G +P E T +L
Sbjct: 645 FNKLQSEGIRPDAITYNTLISRHCHEGMFNDACL---LLYKGVDSGFIPNEVTWSILINY 701
Query: 416 LEKK 419
+ KK
Sbjct: 702 IVKK 705
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 88/360 (24%), Positives = 147/360 (40%), Gaps = 52/360 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELS--------------NG 162
F A Q GY HT + +++ LG F ++ +L+K++ + G
Sbjct: 86 FQRAGAQKGYSHTFDACYLLIDKLGAVGDFKVIEKLLKQMKDEGLLFKESLFILIMKHYG 145
Query: 163 YVSLAAMSTVMRRLDT----------RAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLS 211
L +T + LD ++ +V++D LV + A VF +S +
Sbjct: 146 KAGLPGQATRL-LLDMWGVYSCDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPT 204
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
F V++ C + D A +++M +HG P+ V Y I C + L+
Sbjct: 205 VYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLE 264
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
+M C+P V T V+H L +A +I+EA K+ ++M TD Y L+ L +
Sbjct: 265 DMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMG 324
Query: 332 RF---------------LIYNTMISS--ACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
+ ++YNT+IS A R EE L L + +PD T
Sbjct: 325 QVDEARALLNKIPNPNTVLYNTLISGYVASGRFEEAKDL-LYNNMVIAGYEPDAYTFNIM 383
Query: 375 LKMCCHKKRMKDGMLV--LNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDEL 431
+ +K G LV L L+ EM++K P T+ +L K+ L A E ++ +
Sbjct: 384 I-----DGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSM 438
>gi|297834586|ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331015|gb|EFH61434.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 653
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 107/231 (46%), Gaps = 20/231 (8%)
Query: 206 DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
D + S ++ +I CK R++++A + EM G SP+ +++ F+ Y D +K
Sbjct: 413 DGLLSSVYTYNAVIDCLCKARRTEHAAMFLTEMQDRGISPNLITFNTFLSGYSAGGDVKK 472
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
V ++++ E GC P VIT +++++ L +AK+I +A +++M +
Sbjct: 473 VHGVVEKLLEHGCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNE-------- 524
Query: 326 ILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
+ YN +I S+C + G ++KL ++E P+ + ++ C K++K
Sbjct: 525 --------ITYNILIRSSCSTGDTGRSVKLFANMKESGLSPNLYAYNAIIQSFCKMKKVK 576
Query: 386 DGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
L++ ML G+ P T+ L + L E A+E + H
Sbjct: 577 KAE---ELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSMERHG 624
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 113/284 (39%), Gaps = 38/284 (13%)
Query: 108 VVEALKCF-CFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL 166
+VE F CF + G+ Y +V+AL +++F +K++ +G +S
Sbjct: 365 LVETCGIFDCFVSRGAKPGF----NGYLVLVQALLNAQRFSAGDRYLKQMG--GDGLLS- 417
Query: 167 AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKT 225
+ ++D L K HA + +D IS + F+ + G+
Sbjct: 418 ----------SVYTYNAVIDCLCKARRTEHAAMFLTEMQDRGISPNLITFNTFLSGYSAG 467
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
++++ +HG +PD ++++ I CR K+ + KEM E G KP+ IT
Sbjct: 468 GDVKKVHGVVEKLLEHGCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNEITY 527
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF-------------ILSKAVR 332
I++ + ++K++ MK + Y+++I +L +R
Sbjct: 528 NILIRSSCSTGDTGRSVKLFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTMLR 587
Query: 333 F------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
Y+T+I + E A ++ +E C PD T
Sbjct: 588 IGLKPDNFTYSTLIKALSESGRESEAREMFSSMERHGCVPDSYT 631
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 3/166 (1%)
Query: 166 LAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK--DCISLSSQIFDVLIHGWC 223
A +S + + TR + ++D LVK NS+ AY F + + DC +++LIHG C
Sbjct: 162 FAQISFLGMKPSTRLYNAVIDALVKSNSLNLAYVKFQQMRSDDC-KPDRFTYNILIHGVC 220
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
K D A + +K+M + G P+ +YT I+ + + L+ MQ + P+
Sbjct: 221 KKGVVDEAIRLVKQMEREGNRPNVFTYTILIDGFLIAGRIEEALKQLEMMQVRKLNPNEA 280
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
T ++H + + EA +V + + Y ++++ LS
Sbjct: 281 TIRTLVHGIFRCLPPCEAFEVLLGFMEKNSILQRVAYDTVLYCLSN 326
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 15/195 (7%)
Query: 117 FTW-AKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR 175
+ W + T Y + + AL + L EL+KEI E +GY R
Sbjct: 90 YLWVSNTDPVYAKDQSLKSVLGNALFRKGPLLLSMELLKEIRE--SGY-----------R 136
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKA 234
+ M VL+ + + + VF + + S+++++ +I K+ + A
Sbjct: 137 ITDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLNLAYVK 196
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
++M PD +Y I C++ + +K+M+ +G +P+V T TI++
Sbjct: 197 FQQMRSDDCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEREGNRPNVFTYTILIDGFLI 256
Query: 295 AKQIYEALKVYEKMK 309
A +I EALK E M+
Sbjct: 257 AGRIEEALKQLEMMQ 271
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/149 (18%), Positives = 64/149 (42%), Gaps = 1/149 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D SVL + L ++ + + ++ + ++ ++ ++ VLI W + + Y
Sbjct: 103 DQSLKSVLGNALFRKGPLLLSMELLKEIRESGYRITDELMCVLIGSWGRLGLAKYCNDVF 162
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++ G P Y I+ + ++M+ CKP T I++H + K
Sbjct: 163 AQISFLGMKPSTRLYNAVIDALVKSNSLNLAYVKFQQMRSDDCKPDRFTYNILIHGVCKK 222
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ EA+++ ++M+ + + Y+ LI
Sbjct: 223 GVVDEAIRLVKQMEREGNRPNVFTYTILI 251
>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
Length = 687
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 132/313 (42%), Gaps = 36/313 (11%)
Query: 135 AMVEALGKSKKFGL-MWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNS 193
AM+ GKS K G+ + + I L NG +S L + + L+ T V N+
Sbjct: 319 AMLSLFGKSLKNGVTIGDYTCSI--LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNT 376
Query: 194 VAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
+ + Y + + S Q+ ++ LI+G CK + AQ + EM +G
Sbjct: 377 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 436
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
+P ++ I+ Y R K L EMQE G KP+V++ +++A K +I EA+
Sbjct: 437 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 496
Query: 303 KVYEKMKSDDCLTDTSFYSSLI------------FILSKAVR-------FLIYNTMISSA 343
+ + M D L + Y+++I FIL + ++ + YN +I
Sbjct: 497 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 556
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C +S+ A ++ + PD ++ + CC++ + L+L + M GI
Sbjct: 557 CNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDK---ALDLQQRMHKYGIK 613
Query: 404 PQESTHKMLAEEL 416
T+ L L
Sbjct: 614 STVRTYHQLISGL 626
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 122/302 (40%), Gaps = 16/302 (5%)
Query: 29 LCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHE 88
L N +C T EL G S ++ D + + + + L E+ + L E +
Sbjct: 377 LINGYCQTGELEGAFSTFGQMKSRHIKPDHI--TYNALINGLCKAERITNAQDLLMEMQD 434
Query: 89 TDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGL 148
V+ E + + + KCF + G +Y ++V A K+ K
Sbjct: 435 NGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK--- 491
Query: 149 MWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DC 207
+ E V +D++ + V + + + ++D V+ A+ + K K +
Sbjct: 492 IPEAVAILDDMFHKDV----------LPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNG 541
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS S +++LI G C + A++ + + H PD VSY I C + K
Sbjct: 542 ISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKAL 601
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ M + G K +V T ++ L A ++ E +Y+KM ++ + + ++ ++
Sbjct: 602 DLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAY 661
Query: 328 SK 329
SK
Sbjct: 662 SK 663
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 80/200 (40%), Gaps = 19/200 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++VL+ G C+ + + EM PDG +Y+ + R D + + +
Sbjct: 269 YNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSL 328
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ G TC+I+++ L K ++ A +V + L + + +
Sbjct: 329 KNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQS------LVNAGLVPTRV---------- 372
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
IYNT+I+ C E A +++ KPD T+ + C +R+ + +L+
Sbjct: 373 IYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQ---DLL 429
Query: 395 REMLSKGIVPQESTHKMLAE 414
EM G+ P T L +
Sbjct: 430 MEMQDNGVNPTVETFNTLID 449
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/231 (18%), Positives = 97/231 (41%), Gaps = 20/231 (8%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
G T ET+N +++A G++ + + ++ E+ E NG + + +
Sbjct: 435 NGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQE--NGL-----------KPNVVSYGS 481
Query: 184 LMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+++ K + A + + KD + ++Q+++ +I + + +D A +++M +
Sbjct: 482 IVNAFCKNGKIPEAVAILDDMFHKDVLP-NAQVYNAIIDAYVEHGPNDQAFILVEKMKSN 540
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G SP V+Y I+ C + + + + + P ++ ++ A I +A
Sbjct: 541 GISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKA 600
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL----IYNTMISSACVRSE 348
L + ++M + Y LI L A R + +Y M+ + V S
Sbjct: 601 LDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSN 651
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK-EM 273
++V+I G + + A + EM + P+ ++Y I+ + + D + ++L+ +M
Sbjct: 199 YNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDL-EAGFSLRDQM 257
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
G KP+ IT +++ L +A ++ E + ++M S + D YS L LS+
Sbjct: 258 VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 313
>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
Length = 859
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 120/273 (43%), Gaps = 32/273 (11%)
Query: 169 MSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV-----LIHGWC 223
MS + R R+ S L+ LV++ A VF D I + + DV +++ C
Sbjct: 182 MSRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVF----DQIVGTGIVPDVYMCSIVVNAHC 237
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
+ + D A + +++M + G P+ V+Y + Y DF V+ L+ M E+G +V+
Sbjct: 238 QVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGVERVLRLMSERGVSRNVV 297
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCL-TDTSFYSSLI------------------ 324
TCT++M K ++ EA K+ +++ D+ L D Y L+
Sbjct: 298 TCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGVLVDGYCQMGRMEDAVRIRDE 357
Query: 325 -FILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+ V +I NT+I C + A ++ + + + KPDC ++ L C + +
Sbjct: 358 MLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPDCYSYNTLLDGYCREGK 417
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ + L EML GI P T+ + + L
Sbjct: 418 VSKAFM---LCEEMLGDGITPTVVTYNTVIKGL 447
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 133/322 (41%), Gaps = 44/322 (13%)
Query: 125 GYMHTPETYNAMVEAL---GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
G+ + +N M+ L GK + G +++ +KE+ LS ++ +S
Sbjct: 502 GFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELG-LSPDEITYRTLS----------- 549
Query: 182 SVLMDTLVKRNSVAHAYKV-FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
D K +V A+++ + + +S S ++++ LI G K RK + + EM
Sbjct: 550 ----DGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQT 605
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G SP+ V+Y I +C E+ K + EM E+G P+V+ C+ ++ +L + +I E
Sbjct: 606 RGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRISE 665
Query: 301 ALKVYEKMKSDDCL------TDTSFYSSLIF-------------ILSKAVRFLIYNTMIS 341
A + +KM D L +D + L I + ++YN I
Sbjct: 666 ATVILDKMLDFDILAVHNKCSDKLVKNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAID 725
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C + A + + PD T+ + C + + L EML KG
Sbjct: 726 GLCKSGKLDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEA---FKLRDEMLEKG 782
Query: 402 IVPQESTHKMLAEELEKKSLGN 423
++P + + L L K LGN
Sbjct: 783 LIPNITIYNALINGLCK--LGN 802
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 26/185 (14%)
Query: 186 DTLVKRNSVAHAYKV---FLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
D LVK + A K+ K C SLS+ I +++ I G CK+ K D A+ + +
Sbjct: 687 DKLVKNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAIDGLCKSGKLDEARSVLSVLMSR 746
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLK---EMQEKGCKPSVITCTIVMHALEKAKQI 298
GF PD +Y C + H C VD K EM EKG P++ +++ L K I
Sbjct: 747 GFLPDNFTY-CTLIHACSVSG--NVDEAFKLRDEMLEKGLIPNITIYNALINGLCKLGNI 803
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK 358
A +++ K+ + + + YN +I C + A +LR+K
Sbjct: 804 DRAQRLFYKLYQKGLVPNA----------------VTYNILIGCYCRIGDLDKASRLREK 847
Query: 359 IEEDS 363
+ E+
Sbjct: 848 MTEEG 852
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I++ LI+G CK D AQ+ +++Q G P+ V+Y I YCR D K ++M
Sbjct: 789 IYNALINGLCKLGNIDRAQRLFYKLYQKGLVPNAVTYNILIGCYCRIGDLDKASRLREKM 848
Query: 274 QEKGCKPSVI 283
E+G +I
Sbjct: 849 TEEGISTRII 858
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
+D R VL+D + + A ++ + + + ++ I + LI G+CK + A++
Sbjct: 330 VDERVYGVLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERV 389
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
M PD SY ++ YCRE K +EM G P+V+T V+ L
Sbjct: 390 FVGMVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVD 449
Query: 295 AKQIYEALKVYEKM 308
+AL ++ M
Sbjct: 450 VGSYDDALHLWHLM 463
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 27/227 (11%)
Query: 196 HAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255
H + V+ +F C S +FD+L+ + + + +A EM + G P S + +
Sbjct: 144 HVFSVYKEFGFC----SGVFDMLMKAFAERGMTKHALYVFDEMSRIGRVPGLRSCSFLLG 199
Query: 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315
++ + R ++ G P V C+IV++A + ++ A++V EKM +
Sbjct: 200 KLVQKGEGRVAVMVFDQIVGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEP 259
Query: 316 DTSFYSSLI-----------------FILSKAV-RFLIYNTMISSA-CVRSEEGNALKLR 356
+ Y+ L+ + + V R ++ TM+ C + + A KL
Sbjct: 260 NVVTYNGLVNGYVGRGDFEGVERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLL 319
Query: 357 QKIEEDS-CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
+++EED D + + C RM+D + + + EML G+
Sbjct: 320 REVEEDELLVVDERVYGVLVDGYCQMGRMEDAVRIRD---EMLRVGL 363
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 67/190 (35%), Gaps = 19/190 (10%)
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
K SD A KE+ GF+ V++ I C+ + M+E G P I
Sbjct: 484 KMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEI 543
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF---------- 333
T + K + EA ++ M+ Y+SLI L K +
Sbjct: 544 TYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEM 603
Query: 334 ---------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
+ Y T+IS C + A L ++ E P+ ++ + R+
Sbjct: 604 QTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRI 663
Query: 385 KDGMLVLNLM 394
+ ++L+ M
Sbjct: 664 SEATVILDKM 673
>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 418
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 131/310 (42%), Gaps = 36/310 (11%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W KEI L GY + ++LM K
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWGFYKEI--LECGYPA-----------SLYFFNILMHRFCK 148
Query: 191 RNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ + VF + + S F+ L++G+ + D + M G PD +
Sbjct: 149 EGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYT 208
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+ I C+E + + EM +KG P+ +T T ++ K ++ A+++Y++M
Sbjct: 209 YSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQML 268
Query: 310 SDDCLTDTSFYSSLIFILS-----KAVRFLI--------------YNTMISSACVRSEEG 350
S D Y++LI+ L K R LI Y T+I +C +
Sbjct: 269 SQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLE 328
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A + R+++ E++ + D + + C + R D ++REMLS G+ P T+
Sbjct: 329 TAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLKPDSGTYT 385
Query: 411 MLAEELEKKS 420
M+ E KK
Sbjct: 386 MIINEFCKKG 395
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 115/276 (41%), Gaps = 31/276 (11%)
Query: 144 KKFGLMWELVKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNS 193
+K+GL +V + L NGY+ + R + D SVL++ L K +
Sbjct: 163 RKWGLRPSVV-SFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESK 221
Query: 194 VAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
+ A ++F + D + + F LI G CK K D A + K+M SPD ++Y
Sbjct: 222 MDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNT 281
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I C++ D ++ + EM KG KP IT T ++ K + A + ++M ++
Sbjct: 282 LIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEEN 341
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
D Y++L IS C +A K+ +++ KPD T+
Sbjct: 342 IRLDDVAYTAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYT 385
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+ C K + G L++EM G VP T
Sbjct: 386 MIINEFCKKGDVWTGS---KLLKEMQRDGHVPSVVT 418
>gi|255661030|gb|ACU25684.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 376
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 136/308 (44%), Gaps = 46/308 (14%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV--SLAAMSTVMRR---L 176
TQ+G++ TY +V+ K NGY+ SL + + L
Sbjct: 86 TQSGFVEDSTTYGILVDGFCK------------------NGYINKSLRVLEIAEEKGGVL 127
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D A S +++ L K + A V K+ + ++ +++ LI+G+ K D A +
Sbjct: 128 DAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFMGVSKFDDAIRVF 187
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM SP V+Y I C+ + F + +KEM EKG KP VIT +++M L +
Sbjct: 188 REMGSTNCSPTVVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLMKGLCQG 247
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI----------------FILSK---AVRFLIY 336
++ AL+++ ++ S+ D + LI F +++ A + +
Sbjct: 248 HKVEMALQLWNQVISNGLKPDVQMLNILIHGLCSVGKTQLALMLYFDMNRWNCAPNLVTH 307
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT++ + NAL + +I + +PD ++ +LK C R+ +L L ++
Sbjct: 308 NTLMEGFYKDGDIRNALGIWARILRNGLQPDIVSYNITLKGLCSCSRISFAILFL---QD 364
Query: 397 MLSKGIVP 404
L+K I P
Sbjct: 365 ALAKKIAP 372
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 100/238 (42%), Gaps = 29/238 (12%)
Query: 189 VKRNSVAHAYKVFLKFKDCISL--------SSQI--FDVLIHGWCKTRKSDYAQKAMKEM 238
V N++ + + + KDCI L S + F++++ G D A + M
Sbjct: 26 VVYNAMLNGFFRAGRIKDCIELWELMGREXSQNVVSFNIMMRGLFGNGDVDKAISIWELM 85
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
Q GF D +Y ++ +C+ K L+ +EKG + +++ L K ++
Sbjct: 86 TQSGFVEDSTTYGILVDGFCKNGYINKSLRVLEIAEEKGGVLDAFAYSAMINGLCKEAKL 145
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK 358
EA+ V M + + +YNT+I+ S+ +A+++ ++
Sbjct: 146 DEAVSVLNGMIKNGGTPNAH----------------VYNTLINGFMGVSKFDDAIRVFRE 189
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ +C P T+ + C +R + +L++EML KG P T+ +L + L
Sbjct: 190 MGSTNCSPTVVTYNTLINGLCKGERFAE---AYDLVKEMLEKGWKPCVITYSLLMKGL 244
>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
gi|224033903|gb|ACN36027.1| unknown [Zea mays]
Length = 655
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/332 (20%), Positives = 150/332 (45%), Gaps = 47/332 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELS--------NGYVSLAAMSTVMRRL------- 176
+YNA+++ L +K++G + EL++E+ ++ N +S + + R+
Sbjct: 229 SYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQM 288
Query: 177 -------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRK 227
D R + ++D + K + A+++ + L + ++ L+ G C +
Sbjct: 289 VEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPS-YGLKPNVVCYNTLLKGLCSAER 347
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
+ ++ + EMF D V++ ++ +C+ +V L++M E+GC P VIT T
Sbjct: 348 WEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTT 407
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------- 333
V++ K I EA+ + + M + C +T Y+ ++ L A R+
Sbjct: 408 VINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQG 467
Query: 334 -----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
+ +NT+I+ C + A++L +++ + C PD +++ + + + +
Sbjct: 468 CPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEAL 527
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+LN+ M++KG+ P + +A L ++
Sbjct: 528 ELLNV---MVNKGMSPNTIIYSSIASALSREG 556
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 90/206 (43%), Gaps = 22/206 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +++ G C + A+ M +M Q G + +++ I C++ + LK+M
Sbjct: 440 YTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQML 499
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
GC P +I+ + V+ L KA + EAL++ M + +T YSS+ LS+ R
Sbjct: 500 VNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRIN 559
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++YN +ISS C R E A++ + C P+ T+ +
Sbjct: 560 KVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILI 619
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKG 401
+ + +K+ ++ E+ SKG
Sbjct: 620 RGLASEGFVKEAQ---EMLTELCSKG 642
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 86/218 (39%), Gaps = 22/218 (10%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
++ C + A + EM + G +P Y +E CR FR L+++ +G
Sbjct: 128 VVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG 187
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----- 332
C V C +V++A+ + EAL + + S C D Y++++ L A R
Sbjct: 188 CALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQ 247
Query: 333 --------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+ +NT+IS C ++ ++ E C PD +A +
Sbjct: 248 ELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGI 307
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C + ++ +LN M S G+ P + L + L
Sbjct: 308 CKEGHLEVAHEILN---RMPSYGLKPNVVCYNTLLKGL 342
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/330 (18%), Positives = 124/330 (37%), Gaps = 46/330 (13%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
YNAMV ++ + L + N Y + + R ++D + +R
Sbjct: 93 YNAMVAGYCRAGQLESARRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRG 152
Query: 193 --SVAHAYKVFLK-------FKDCI-----------SLSSQIFDVLIHGWCKTRKSDYAQ 232
+ Y V L+ F+ + +L +++++ C D A
Sbjct: 153 CAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEAL 212
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
++++ G PD VSY ++ C K + V ++EM C P+++T ++ L
Sbjct: 213 HLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYL 272
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAVRF------ 333
+ +V +M C D Y+++I IL++ +
Sbjct: 273 CRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNV 332
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML--VL 391
+ YNT++ C +L ++ + C D T + C ++G++ V+
Sbjct: 333 VCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFC-----QNGLVDRVI 387
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEKKSL 421
L+ +ML +G +P T+ + K+ L
Sbjct: 388 ELLEQMLERGCMPDVITYTTVINGFCKEGL 417
>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Vitis vinifera]
Length = 877
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 124/273 (45%), Gaps = 28/273 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
S+L+D K+ A +F + I+ + F+ +I+G CK + A+ +K +
Sbjct: 543 SILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLE 602
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
GF P ++Y ++ + +E + +EM E G P+V+T T +++ K+ +I
Sbjct: 603 EGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDL 662
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIYNTMIS 341
ALK ++M+ D + YS+LI K + ++YN+MIS
Sbjct: 663 ALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMIS 722
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL--NLMREMLS 399
+ AL +K+ D D T+ + +K+G LV +L EMLS
Sbjct: 723 GFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLI-----DGLLKEGRLVFASDLYMEMLS 777
Query: 400 KGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
KGIVP T +L L K L NA++ ++E+
Sbjct: 778 KGIVPDIITFHVLVNGLCNKGQLENARKILEEM 810
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 109/249 (43%), Gaps = 23/249 (9%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
++D +K ++ A V+ + + +S + + LI+G+CK+ + D A K EM + G
Sbjct: 615 IVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKG 674
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
D +Y+ I+ +C+ +D E+ E G P+ I ++ + AL
Sbjct: 675 LELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAAL 734
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI-------------------YNTMISSA 343
Y+KM +D D Y++LI L K R + ++ +++
Sbjct: 735 VWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGL 794
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C + + NA K+ ++++ + P + + + +K+ L EML +G+V
Sbjct: 795 CNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEA---FTLHDEMLDRGLV 851
Query: 404 PQESTHKML 412
P + T+ +L
Sbjct: 852 PDDVTYDIL 860
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 96/243 (39%), Gaps = 25/243 (10%)
Query: 197 AYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256
A K+F + DC + +++++ CK K D A + M G P+ VSY I
Sbjct: 454 ASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILG 513
Query: 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316
+CR+ + +M + KP+V+T +I++ K +AL ++++M S
Sbjct: 514 HCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLS------ 567
Query: 317 TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
L+ A +NT+I+ C + A + E+ P C T+ +
Sbjct: 568 ----------LNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVD 617
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436
+ + + V REM G+ P T+ L K + RID L
Sbjct: 618 GFIKEGNIDSALAVY---REMCEFGVSPNVVTYTSLINGFCKSN------RIDLALKTRD 668
Query: 437 EQR 439
E R
Sbjct: 669 EMR 671
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 20/225 (8%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
M++L+ LV+RN + ++ K I V++ K + + A++ +E
Sbjct: 228 MNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETK 287
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ G D +Y+ I+ C++ + L+EM+E+G PS T T V+ A +
Sbjct: 288 ERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMV 347
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
EAL++ E+M +C K + ++ +++ C + +AL L KI
Sbjct: 348 EALRLKEEMI--NC--------------GKPMNLVVATSLMKGYCAQGNLDSALNLFNKI 391
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
ED P+ T++ ++ CC+ ++ L +M GI P
Sbjct: 392 TEDGLFPNKVTYSVLIEGCCNSGNIEKAS---ELYTQMKLNGIPP 433
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 123/299 (41%), Gaps = 36/299 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
Y+ +++A+ K L EL++E+ E G+V A T SV++ + +
Sbjct: 297 AYSIIIQAVCKKPNSNLGLELLEEMKE--RGWVPSEATFT----------SVIVACVAQG 344
Query: 192 NSVAHAYKVFLKFKDCI-SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
N V A ++ + +C ++ + L+ G+C D A ++ + G P+ V+Y
Sbjct: 345 NMV-EALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTY 403
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ IE C + K +M+ G PSV ++ KA EA K+++ ++
Sbjct: 404 SVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFD--EA 461
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
DC YN M+S C + A L + P+ +
Sbjct: 462 VDC---------------GVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVS 506
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
+ + C K M + ++ +ML++ + P T+ +L + KK G++++ +D
Sbjct: 507 YNDMILGHCRKGNMD---MASSVFSDMLARDLKPNVVTYSILIDGNFKK--GDSEKALD 560
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + L+D L+K + A ++++ I F VL++G C + + A+K +
Sbjct: 748 DLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKIL 807
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
+EM + +P + Y I Y RE + ++ EM ++G P +T I+++
Sbjct: 808 EEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILING 863
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/260 (18%), Positives = 90/260 (34%), Gaps = 58/260 (22%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMS 170
+ G++ + TYN++V+ K + +E+ E L NG+ +
Sbjct: 602 EEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRID 661
Query: 171 TVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVFLK----------------- 203
++ LD A S L+D KR + A +F +
Sbjct: 662 LALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMI 721
Query: 204 --FKDCISLSSQI-----------------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
F+D ++ + + + LI G K + +A EM G
Sbjct: 722 SGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIV 781
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD +++ + C + L+EM K PSV+ ++ + + EA +
Sbjct: 782 PDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTL 841
Query: 305 YEKMKSDDCLTDTSFYSSLI 324
+++M + D Y LI
Sbjct: 842 HDEMLDRGLVPDDVTYDILI 861
>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
Length = 837
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 124/273 (45%), Gaps = 28/273 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
S+L+D K+ A +F + I+ + F+ +I+G CK + A+ +K +
Sbjct: 503 SILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLE 562
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
GF P ++Y ++ + +E + +EM E G P+V+T T +++ K+ +I
Sbjct: 563 EGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDL 622
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIYNTMIS 341
ALK ++M+ D + YS+LI K + ++YN+MIS
Sbjct: 623 ALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMIS 682
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL--NLMREMLS 399
+ AL +K+ D D T+ + +K+G LV +L EMLS
Sbjct: 683 GFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLI-----DGLLKEGRLVFASDLYMEMLS 737
Query: 400 KGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
KGIVP T +L L K L NA++ ++E+
Sbjct: 738 KGIVPDIITFHVLVNGLCNKGQLENARKILEEM 770
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 109/249 (43%), Gaps = 23/249 (9%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
++D +K ++ A V+ + + +S + + LI+G+CK+ + D A K EM + G
Sbjct: 575 IVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKG 634
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
D +Y+ I+ +C+ +D E+ E G P+ I ++ + AL
Sbjct: 635 LELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAAL 694
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI-------------------YNTMISSA 343
Y+KM +D D Y++LI L K R + ++ +++
Sbjct: 695 VWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGL 754
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C + + NA K+ ++++ + P + + + +K+ L EML +G+V
Sbjct: 755 CNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEA---FTLHDEMLDRGLV 811
Query: 404 PQESTHKML 412
P + T+ +L
Sbjct: 812 PDDVTYDIL 820
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 96/243 (39%), Gaps = 25/243 (10%)
Query: 197 AYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256
A K+F + DC + +++++ CK K D A + M G P+ VSY I
Sbjct: 414 ASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILG 473
Query: 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316
+CR+ + +M + KP+V+T +I++ K +AL ++++M S
Sbjct: 474 HCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLS------ 527
Query: 317 TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
L+ A +NT+I+ C + A + E+ P C T+ +
Sbjct: 528 ----------LNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVD 577
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436
+ + + V REM G+ P T+ L K + RID L
Sbjct: 578 GFIKEGNIDSALAVY---REMCEFGVSPNVVTYTSLINGFCKSN------RIDLALKTRD 628
Query: 437 EQR 439
E R
Sbjct: 629 EMR 631
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 20/225 (8%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
M++L+ LV+RN + ++ K I V++ K + + A++ +E
Sbjct: 188 MNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETK 247
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ G D +Y+ I+ C++ + L+EM+E+G PS T T V+ A +
Sbjct: 248 ERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMV 307
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
EAL++ E+M +C K + ++ +++ C + +AL L KI
Sbjct: 308 EALRLKEEMI--NC--------------GKPMNLVVATSLMKGYCAQGNLDSALNLFNKI 351
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
ED P+ T++ ++ CC+ ++ L +M GI P
Sbjct: 352 TEDGLFPNKVTYSVLIEGCCNSGNIEKAS---ELYTQMKLNGIPP 393
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 123/299 (41%), Gaps = 36/299 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
Y+ +++A+ K L EL++E+ E G+V A T SV++ + +
Sbjct: 257 AYSIIIQAVCKKPNSNLGLELLEEMKE--RGWVPSEATFT----------SVIVACVAQG 304
Query: 192 NSVAHAYKVFLKFKDCI-SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
N V A ++ + +C ++ + L+ G+C D A ++ + G P+ V+Y
Sbjct: 305 NMV-EALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTY 363
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ IE C + K +M+ G PSV ++ KA EA K+++ ++
Sbjct: 364 SVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFD--EA 421
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
DC YN M+S C + A L + P+ +
Sbjct: 422 VDC---------------GVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVS 466
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
+ + C K M + ++ +ML++ + P T+ +L + KK G++++ +D
Sbjct: 467 YNDMILGHCRKGNMD---MASSVFSDMLARDLKPNVVTYSILIDGNFKK--GDSEKALD 520
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + L+D L+K + A ++++ I F VL++G C + + A+K +
Sbjct: 708 DLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKIL 767
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
+EM + +P + Y I Y RE + ++ EM ++G P +T I+++
Sbjct: 768 EEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILING 823
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/260 (18%), Positives = 90/260 (34%), Gaps = 58/260 (22%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMS 170
+ G++ + TYN++V+ K + +E+ E L NG+ +
Sbjct: 562 EEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRID 621
Query: 171 TVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVFLK----------------- 203
++ LD A S L+D KR + A +F +
Sbjct: 622 LALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMI 681
Query: 204 --FKDCISLSSQI-----------------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
F+D ++ + + + LI G K + +A EM G
Sbjct: 682 SGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIV 741
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD +++ + C + L+EM K PSV+ ++ + + EA +
Sbjct: 742 PDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTL 801
Query: 305 YEKMKSDDCLTDTSFYSSLI 324
+++M + D Y LI
Sbjct: 802 HDEMLDRGLVPDDVTYDILI 821
>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
Length = 948
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 144/347 (41%), Gaps = 49/347 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE-----------LSNGYVS 165
F A Q GY+H+ Y +++ LG +F ++ +L+K++ + L Y
Sbjct: 81 FEKAGLQRGYIHSFHVYYLLIDKLGNVGEFKMIDKLLKQMKDEGCVFKESLFILIMRYYG 140
Query: 166 LAAMSTVMRRL------------DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSS 212
A + RL ++ +V+++ LV N A VF IS +
Sbjct: 141 KAGLPGQATRLLLDMWGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTV 200
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
F V++ +C + D A +++M +HG P+ + Y I + L+E
Sbjct: 201 YTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEE 260
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M GC+P V T V+H L KA +I+EA K++++M D D L+ L + +
Sbjct: 261 MFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGK 320
Query: 333 F---------------LIYNTMISSACV--RSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++YNT+I+ V R EE L L + + +PD T +
Sbjct: 321 VDEARAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDL-LYKNMVIAGFEPDAFTFNIMI 379
Query: 376 KMCCHKKRMKDGMLV--LNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C K G LV L + EM+ KG P T+ +L + K+
Sbjct: 380 DGLCKK-----GYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQG 421
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 110/269 (40%), Gaps = 59/269 (21%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK--------- 265
F+++I G CK A + + EM + GF P+ ++YT I+ +C++ F +
Sbjct: 375 FNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMS 434
Query: 266 --------VDYT------------------LKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
V Y EM KGCKP + T +++ L K ++
Sbjct: 435 AKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKME 494
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLI--FI----------LSKAVRF-------LIYNTMI 340
EAL +Y M + + +T Y++LI F+ L +RF + YN +I
Sbjct: 495 EALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLI 554
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+ C L L +++ + P + + C ++ D L +R+M+ +
Sbjct: 555 KALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDA---LQFLRDMIQR 611
Query: 401 GIVPQESTHKMLAEELEKKSLGNAKERID 429
G+ P T+ L L K +G +E ++
Sbjct: 612 GLTPDIVTYNSLINGLCK--MGRFQEALN 638
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 112/274 (40%), Gaps = 25/274 (9%)
Query: 168 AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKT 225
+MS L+T + L+ L K + A +++ + K C F+ LI+G CK
Sbjct: 432 SMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGC-KPDIYTFNSLIYGLCKN 490
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
K + A ++M G + V+Y I + R + ++ D + EM+ +GC IT
Sbjct: 491 DKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITY 550
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRFL----- 334
++ AL K + L + E+M ++ + + LI + A++FL
Sbjct: 551 NGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQ 610
Query: 335 --------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
YN++I+ C AL L ++ PD T+ + C++ D
Sbjct: 611 RGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFND 670
Query: 387 GMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
L+ + +S G +P E T +L K +
Sbjct: 671 A---CQLLFKGVSNGFIPNEITWSILINYFVKNN 701
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 124/311 (39%), Gaps = 40/311 (12%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS- 182
G+ T+N M++ L K G + ++ +DE+ V + + ++
Sbjct: 366 AGFEPDAFTFNIMIDGLCKK---GYLVSALEFLDEM------------VKKGFEPNVITY 410
Query: 183 -VLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+L+D K+ A KV +SL++ ++ LI CK K A + EM
Sbjct: 411 TILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSS 470
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD ++ I C+ + ++M +G + +T ++HA + + I +
Sbjct: 471 KGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQ 530
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKA-----VRFLIY--------------NTMIS 341
A K+ +M+ C D Y+ LI L K LI N +I+
Sbjct: 531 ADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILIN 590
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
S C + +AL+ + + + PD T+ + C R ++ LNL + +KG
Sbjct: 591 SFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEA---LNLFNGLQAKG 647
Query: 402 IVPQESTHKML 412
I P T+ L
Sbjct: 648 IHPDAVTYNTL 658
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 86/195 (44%), Gaps = 16/195 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T+N+++ L K+ K L + D L G ++ +T + L+ ++
Sbjct: 479 TFNSLIYGLCKNDKMEEALGLYR--DMLLEGVIA-----------NTVTYNTLIHAFLRL 525
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A K+ ++F+ C L + ++ LI CKT ++ +++MF P S
Sbjct: 526 ELIQQADKLVGEMRFRGC-PLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINS 584
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
I +CR L++M ++G P ++T +++ L K + EAL ++ ++
Sbjct: 585 CNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQ 644
Query: 310 SDDCLTDTSFYSSLI 324
+ D Y++LI
Sbjct: 645 AKGIHPDAVTYNTLI 659
>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
Length = 883
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 122/269 (45%), Gaps = 30/269 (11%)
Query: 161 NGYVSLAAM--STVMR---RLDTRAMSVLMDTLVKRNSVAHAYKVFLKF---KDCISLSS 212
NG+V A M V+R LDT + L+ +R+ + A++VF K ++C +S
Sbjct: 207 NGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENC-RPNS 265
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
+ +LIHG C+ + + A + +EM + G P +YT I+ C K L E
Sbjct: 266 VTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDE 325
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM-KSDDCLTDTSFYSSLIFILSKAV 331
M K C P+V T TI++ L + +I EA V+ KM K C +F
Sbjct: 326 MATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITF------------ 373
Query: 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
N +I+ C +A +L +E+ +CKP+ T+ ++ C + L
Sbjct: 374 -----NALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL-- 426
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEKKS 420
L+R ++ G++P T+ +L + K+
Sbjct: 427 -LLRRVVDNGLLPDRVTYNILVDGFCKEG 454
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/328 (20%), Positives = 138/328 (42%), Gaps = 51/328 (15%)
Query: 132 TYNAMVEALGKSKKF----GLMWELVKE--------IDELSNGY------VSLAAMSTVM 173
TY +++ L + K G+ +++K + L NGY VS + +VM
Sbjct: 337 TYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVM 396
Query: 174 RRLD----TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS---LSSQI-FDVLIHGWCKT 225
+ + R + LM+ L + V+ +YK FL + + L ++ +++L+ G+CK
Sbjct: 397 EKGNCKPNIRTYNELMEGLCR---VSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKE 453
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
+ + A M G PDG ++T I+ C+ + + L M +KG +T
Sbjct: 454 GQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTF 513
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------ 333
T ++ K + + ++E M + CLT ++ + L K +
Sbjct: 514 TALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMK 573
Query: 334 -------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
+ + +I C E +LK+ +++++ C P+ T+ + C+ R+++
Sbjct: 574 YGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEE 633
Query: 387 GMLVLNLMREMLSKGIVPQESTHKMLAE 414
+L M S G+ P T+ +L +
Sbjct: 634 AETIL---FSMSSFGVSPNHFTYAVLVK 658
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 105/278 (37%), Gaps = 53/278 (19%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL 166
+V ++ K F G + TYN +V+ K + + + +
Sbjct: 417 RVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFN------------ 464
Query: 167 AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKT 225
+M++ D + L+D L K + A + K ISL F LI G CK
Sbjct: 465 -SMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKI 523
Query: 226 RKS-------------------------------DY----AQKAMKEMFQHGFSPDGVSY 250
K+ DY A + +M ++G P V++
Sbjct: 524 GKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTH 583
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T IE +CR + L+ M++ GC P+V T TI+++ L ++ EA + M S
Sbjct: 584 TILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSS 643
Query: 311 DDCLTDTSFYSSLIFILSKAVR----FLIYNTMISSAC 344
+ Y+ L+ KA R F I +TM+ + C
Sbjct: 644 FGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGC 681
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 13/203 (6%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
+LI G C+ ++ + K ++ M Q G SP+ +YT I C + + L M
Sbjct: 585 ILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSF 644
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--FILSK---AV 331
G P+ T +++ A KA ++ A ++ M + C ++ YS+L+ F+LS
Sbjct: 645 GVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGA 704
Query: 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
R L + + + SEE + L +I++ + + + +C K+G ++
Sbjct: 705 RALSSTGDLDARSLSSEENDNNCLSNEIKKCGVPTEDLYNFLVVGLC------KEGRIIE 758
Query: 392 --NLMREMLSKGIVPQESTHKML 412
L ++M+ G+ P ++ ++
Sbjct: 759 ADQLTQDMVKHGLFPDKAISSII 781
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 203 KFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
+ K C + +++ L+ G CK + A + ++M +HG PD + + IEHYC+
Sbjct: 731 EIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDK-AISSIIEHYCKTCK 789
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
+ +K + + PS + V+H L ++ EA K+
Sbjct: 790 YDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKL 831
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/156 (17%), Positives = 67/156 (42%), Gaps = 14/156 (8%)
Query: 127 MHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
+ T T+N ++ALGK K + E + + + + +V+ ++L++
Sbjct: 542 LTTAHTFNCFLDALGKDYK-------LNEANAMLGKMMKYGLVPSVVTH------TILIE 588
Query: 187 TLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+ A + K+ + K S + + ++I+G C + + A+ + M G SP
Sbjct: 589 GHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSP 648
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
+ +Y ++ + + + + M + GC+P+
Sbjct: 649 NHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPN 684
>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 670
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 103/223 (46%), Gaps = 20/223 (8%)
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ----IFDVLIHGWCKTRKSDYAQK 233
++ + +++ +++ ++A+K +L S Q ++++I CK + D A
Sbjct: 160 VKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVD 219
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
+EM +PD +Y+ + C+E+ + + L EMQ +GC P+ +T +++ AL
Sbjct: 220 TFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALS 279
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
K + A K+ + M C+ + + YNT+I C++ + AL
Sbjct: 280 KNGDLSRAAKLVDNMFLKGCVPNE----------------VTYNTLIHGLCLKGKLDKAL 323
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
L +K+ C P+ T+ + ++R +DG+ +L M E
Sbjct: 324 SLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEE 366
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 134/322 (41%), Gaps = 41/322 (12%)
Query: 111 ALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMS 170
A K + + G+ TYN +++AL K + +ID + + + +
Sbjct: 179 AFKFYLHVFGANSKGFQPNLLTYNLIIKALCK----------LGQIDRAVDTFREMPLKN 228
Query: 171 TVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFL----KFKDCISLSSQIFDVLIHGWCKTR 226
D S LM+ L K V A VFL + + C+ + F+VLI K
Sbjct: 229 C---NPDVFTYSTLMNGLCKERRVDEA--VFLLDEMQAEGCLP-NPVTFNVLIDALSKNG 282
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
A K + MF G P+ V+Y I C + K L++M C P+ +T
Sbjct: 283 DLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYG 342
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR 346
+++ L K ++ + + + M+ + YSSLI L K
Sbjct: 343 TIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFK----------------E 386
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
+ NA++L +++ E CKP+ + + C ++ + ++++EMLSKG +P
Sbjct: 387 GKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAE---DILQEMLSKGFLPNA 443
Query: 407 STHKMLAEELEKKSLGNAKERI 428
T+ L + KK G++++ I
Sbjct: 444 FTYSSLMKGFFKK--GDSQKAI 463
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 21/208 (10%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ I G C+ K D A+ ++EM GF P+ +Y+ ++ + ++ D +K KEM
Sbjct: 410 VYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEM 469
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+ + +V+ C+++++ L ++ ++ EAL V+ M + D YSS
Sbjct: 470 MSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSS----------- 518
Query: 334 LIYNTMISSACVRSEEGNALKL--RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
MI C LKL + +E +PD T+ C + + +
Sbjct: 519 -----MIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRA---I 570
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEKK 419
+L+ ML +G P T + E L ++
Sbjct: 571 DLLNSMLDEGCDPDSLTCNIFLETLRER 598
>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 707
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 121/273 (44%), Gaps = 23/273 (8%)
Query: 180 AMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
++S L++ V+ A+ V L K + + +++L+ G C+ + A ++EM
Sbjct: 109 SLSGLLECFVQMRKTGFAHGVLALMLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREM 168
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
Q+ PD VSY I +C K+ K EMQ GC S++T I++ A KA ++
Sbjct: 169 RQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKM 228
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLI--------FILSKAVR-----------FLIYNTM 339
EA+ + ++MK D Y+SLI KA+ + YNT+
Sbjct: 229 DEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTL 288
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I C A ++ + + E +P+ T+ + C + K+ + +LNL ML
Sbjct: 289 IRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNL---MLQ 345
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
K P T+ ++ +L K SL I EL+
Sbjct: 346 KDEEPNVVTYNIIINKLCKDSLVADALEIVELM 378
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 121/300 (40%), Gaps = 53/300 (17%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G+ YN +++ L ++ +FG L++E+ + S L
Sbjct: 137 GFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNS-----------------------L 173
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQK 233
M +V N+V + + + + L++++ + +LI +CK K D A
Sbjct: 174 MPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMG 233
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
+KEM G D + YT I +C + + E+ E+G P IT ++
Sbjct: 234 LLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFC 293
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------SKAVRFL------------- 334
K ++ EA +++E M + Y+ LI L +A++ L
Sbjct: 294 KLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVV 353
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN +I+ C S +AL++ + +++ +PD T+ L C K + + +L LM
Sbjct: 354 TYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLM 413
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 93/214 (43%), Gaps = 20/214 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G+CK + A + + M + G P+ +YT I+ C ++ L M
Sbjct: 285 YNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLML 344
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+K +P+V+T I+++ L K + +AL++ E MK D +
Sbjct: 345 QKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDN----------------I 388
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDS--CKPDCETHARSLKMCCHKKRMKDGMLVLN 392
YN+++ C + + A KL + +DS PD + + C R+ + + +
Sbjct: 389 TYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYD 448
Query: 393 LMREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
L+ E L G + +T+ +L L+ + A E
Sbjct: 449 LLVEKLGAGDIV--TTNILLNSTLKSGDVNKAME 480
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 9/174 (5%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D ++L+++ +K V A +++ + + I +S + +I G+CKT + A+ +
Sbjct: 458 DIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLL 517
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+M P Y C + C++ + +EMQ P VI+ I++ KA
Sbjct: 518 CKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKA 577
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI--FI----LSKAVRFLIYNTMISSA 343
I A + M D YS LI F+ L +A+ F ++ MI S
Sbjct: 578 GDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISF--FDKMIDSG 629
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 50/261 (19%), Positives = 110/261 (42%), Gaps = 41/261 (15%)
Query: 132 TYNAMVEAL---GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL 188
TY +++ L GK+K+ + L+ + DE N +++++ L
Sbjct: 319 TYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPN----------------VVTYNIIINKL 362
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHG--FSP 245
K + VA A ++ K + I ++ L+ G C D A K + M + P
Sbjct: 363 CKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDP 422
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D +S+ I C+ + + EK ++T I++++ K+ + +A++++
Sbjct: 423 DVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELW 482
Query: 306 EKMKSDDCLTDTSFYSSLI------FILSKAVRFLI-------------YNTMISSACVR 346
+++ + + ++ Y+++I +L+ A L YN ++SS C +
Sbjct: 483 KQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKK 542
Query: 347 SEEGNALKLRQKIEEDSCKPD 367
A +L ++++ D PD
Sbjct: 543 GTLDQAWRLFEEMQRDDSFPD 563
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 96/240 (40%), Gaps = 20/240 (8%)
Query: 72 LNEQSRISSHALSEDHETDVDKVS-EILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTP 130
L+E S++ L + TD D +S L +++ +AL + K G + T
Sbjct: 403 LDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTT 462
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
N ++ + KS EL K+I S ++ DT + ++D K
Sbjct: 463 ---NILLNSTLKSGDVNKAMELWKQISN-----------SKIVPNSDT--YTTMIDGFCK 506
Query: 191 RNSVAHAYKVFLKFKDCISLSSQIFDV--LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
+ A + K + L +FD L+ CK D A + +EM + PD +
Sbjct: 507 TGMLNVAKGLLCKMR-LSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVI 565
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
S+ I+ + D + + L M G P + T + +++ K + EA+ ++KM
Sbjct: 566 SFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKM 625
>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
Length = 902
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 107/240 (44%), Gaps = 22/240 (9%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
++++ +++L+H + A + ++EM G +PD +Y I +C+E + +K
Sbjct: 622 VAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKAL 681
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ M +G + +V+T T +++AL K Q+ E K++++ D Y++LI
Sbjct: 682 EIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSH 741
Query: 328 SKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
S + + YNT++ C+ A KL ++ E +PD
Sbjct: 742 STSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDL 801
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
T+ + K +KD + + N EM++KG P T+ L + L K G+ E +
Sbjct: 802 VTYNTLISGYSMKGDVKDALRIRN---EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENM 858
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 120/295 (40%), Gaps = 33/295 (11%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G T TYN +V AL + +ELV+E+ G LA D +
Sbjct: 619 ERGVAMTVATYNLLVHALFMDGRGTEAYELVEEM-----GGKGLAP--------DVFTYN 665
Query: 183 VLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+L++ K +V A ++F + + + + LI+ K + K E +
Sbjct: 666 ILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRR 725
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD V Y I + + + + EM++K P +T +M L ++ EA
Sbjct: 726 GIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEA 785
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
K+ ++M D + YNT+IS ++ + +AL++R ++
Sbjct: 786 RKLIDEMTERGIQPD----------------LVTYNTLISGYSMKGDVKDALRIRNEMMN 829
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
P T+ ++ C + D N+++EM+ GI P +ST+ L E L
Sbjct: 830 KGFNPTLLTYNALIQGLCKNGQGDDAE---NMVKEMVENGITPDDSTYISLIEGL 881
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/338 (21%), Positives = 125/338 (36%), Gaps = 77/338 (22%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T+N M+ L + K EL+++ M R + + ++ R
Sbjct: 490 TFNIMLRHLCSAGKPARALELLRQ-----------------MPRPNAVTYNTVIAGFCSR 532
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG-FSPDGV 248
V A + ++ + I+ + + +I GWCK + D A K EM G P+ V
Sbjct: 533 GRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAV 592
Query: 249 SYTCFIEHYCREKDF------------RKVDYT-----------------------LKEM 273
Y I YC + R V T ++EM
Sbjct: 593 MYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEM 652
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK---- 329
KG P V T I+++ K + +AL+++E M Y++LI+ LSK
Sbjct: 653 GGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQV 712
Query: 330 ---------AVR------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
AVR ++YN +I+S A ++ ++E+ PD T+
Sbjct: 713 QETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTL 772
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
++ C R+ + L+ EM +GI P T+ L
Sbjct: 773 MRGLCLLGRVDEAR---KLIDEMTERGIQPDLVTYNTL 807
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 14/204 (6%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
++ G T TY A++ AL K + V+E D+L + V R D
Sbjct: 688 SRRGVRATVVTYTALIYALSKKGQ-------VQETDKLFDEAVRRGI------RPDLVLY 734
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L+++ ++ A+++ + K I+ ++ L+ G C + D A+K + EM +
Sbjct: 735 NALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTE 794
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD V+Y I Y + D + EM KG P+++T ++ L K Q +
Sbjct: 795 RGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDD 854
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI 324
A + ++M + D S Y SLI
Sbjct: 855 AENMVKEMVENGITPDDSTYISLI 878
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 26/221 (11%)
Query: 195 AHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A A+ +F F+ + L + F++++ C K A + +++M + P+ V+Y
Sbjct: 470 APAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTV 525
Query: 254 IEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I +C + ++EM+E+ G P+ T V+ K ++ EA+KV+++M
Sbjct: 526 IAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEM---- 581
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
LT + +YN +I C + + AL R ++ E T+
Sbjct: 582 -LTKGEVKPEAV----------MYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATY- 629
Query: 373 RSLKMCCHKKRMKD-GMLVLNLMREMLSKGIVPQESTHKML 412
+ H M G L+ EM KG+ P T+ +L
Sbjct: 630 ---NLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNIL 667
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 24/158 (15%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMSTVMRRLDTRA 180
YNA++ + S +E++ E+++ L G L + + +D
Sbjct: 734 YNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMT 793
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSD 229
+ LV N++ Y + KD + + +++ ++ LI G CK + D
Sbjct: 794 ERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGD 853
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
A+ +KEM ++G +PD +Y IE E D R +D
Sbjct: 854 DAENMVKEMVENGITPDDSTYISLIEGLTTE-DERAID 890
>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 646
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 103/223 (46%), Gaps = 20/223 (8%)
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ----IFDVLIHGWCKTRKSDYAQK 233
++ + +++ +++ ++A+K +L S Q ++++I CK + D A
Sbjct: 136 VKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVD 195
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
+EM +PD +Y+ + C+E+ + + L EMQ +GC P+ +T +++ AL
Sbjct: 196 TFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALS 255
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
K + A K+ + M C+ + + YNT+I C++ + AL
Sbjct: 256 KNGDLSRAAKLVDNMFLKGCVPNE----------------VTYNTLIHGLCLKGKLDKAL 299
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
L +K+ C P+ T+ + ++R +DG+ +L M E
Sbjct: 300 SLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEE 342
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 134/322 (41%), Gaps = 41/322 (12%)
Query: 111 ALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMS 170
A K + + G+ TYN +++AL K + +ID + + + +
Sbjct: 155 AFKFYLHVFGANSKGFQPNLLTYNLIIKALCK----------LGQIDRAVDTFREMPLKN 204
Query: 171 TVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFL----KFKDCISLSSQIFDVLIHGWCKTR 226
D S LM+ L K V A VFL + + C+ + F+VLI K
Sbjct: 205 C---NPDVFTYSTLMNGLCKERRVDEA--VFLLDEMQAEGCLP-NPVTFNVLIDALSKNG 258
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
A K + MF G P+ V+Y I C + K L++M C P+ +T
Sbjct: 259 DLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYG 318
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR 346
+++ L K ++ + + + M+ + YSSLI L K
Sbjct: 319 TIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFK----------------E 362
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
+ NA++L +++ E CKP+ + + C ++ + ++++EMLSKG +P
Sbjct: 363 GKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAE---DILQEMLSKGFLPNA 419
Query: 407 STHKMLAEELEKKSLGNAKERI 428
T+ L + KK G++++ I
Sbjct: 420 FTYSSLMKGFFKK--GDSQKAI 439
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 21/208 (10%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ I G C+ K D A+ ++EM GF P+ +Y+ ++ + ++ D +K KEM
Sbjct: 386 VYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEM 445
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+ + +V+ C+++++ L ++ ++ EAL V+ M + D YSS
Sbjct: 446 MSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSS----------- 494
Query: 334 LIYNTMISSACVRSEEGNALKL--RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
MI C LKL + +E +PD T+ C + + +
Sbjct: 495 -----MIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRA---I 546
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEKK 419
+L+ ML +G P T + E L ++
Sbjct: 547 DLLNSMLDEGCDPDSLTCNIFLETLRER 574
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 130/307 (42%), Gaps = 28/307 (9%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI---DELSNGY--VSLAAMST 171
F WA +Q G+ HT E+Y +V + +++ + + VKE+ + G+ ++ M
Sbjct: 150 FKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFPVCNIFDMLW 209
Query: 172 VMRRL---DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS-SQIFDVLIHGWCKTRK 227
R + + VL V+ + A + F + ++ +L ++ + L+H K+
Sbjct: 210 STRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGN 269
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
+K +M G +P +Y I++ C+E D +M+E G P V+T
Sbjct: 270 GQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNS 329
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRS 347
++ K + E ++ +MK C+ D + YN +I+ C
Sbjct: 330 LIDGYGKVGSLEEVASLFNEMKDVGCVPDI----------------ITYNGLINCYCKFE 373
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
+ A + +++ + KP+ T++ + C + M+ + L +M G++P E
Sbjct: 374 KMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGA---IKLFVDMRRTGLLPNEF 430
Query: 408 THKMLAE 414
T+ L +
Sbjct: 431 TYTSLID 437
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 82/375 (21%), Positives = 148/375 (39%), Gaps = 72/375 (19%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+TG + TY ++++A K+ W+L+ D L G +L+ +
Sbjct: 422 RTGLLPNEFTYTSLIDANCKAGNLTEAWKLLN--DMLQAGV-----------KLNIVTYT 468
Query: 183 VLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+D L K + A +VF KD IS + Q++ L+HG+ K + + A K +K+M +
Sbjct: 469 ALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTEC 528
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
PD + Y I +C ++ + L+EM+ +G + + T ++ A KA + +A
Sbjct: 529 NIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDA 588
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKA----------VRFL---------IYNTMISS 342
L +++M+ Y LI L KA R L +Y ++I
Sbjct: 589 LNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDG 648
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM-------- 394
C + +A KL +++ PD + +++ +++++ M
Sbjct: 649 LCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFD 708
Query: 395 ------------------------REMLSKGIVPQESTHKMLAEELEKKS-------LGN 423
EM+ KGI+P+E L E K+ L N
Sbjct: 709 LHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKN 768
Query: 424 AKERIDELLTHATEQ 438
ER+ + AT Q
Sbjct: 769 EMERMGLITESATMQ 783
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 124/272 (45%), Gaps = 33/272 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN++++ GK V ++E+++ + + + V D + L++ K
Sbjct: 326 TYNSLIDGYGK----------VGSLEEVASLFNEMKDVGCVP---DIITYNGLINCYCKF 372
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A++ F + K+ + + + LI +CK A K +M + G P+ +Y
Sbjct: 373 EKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTY 432
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T I+ C+ + + L +M + G K +++T T ++ L KA ++ EA +V+ M
Sbjct: 433 TSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLK 492
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
D + Y++L+ KA R +A+K+ +++ E + KPD
Sbjct: 493 DGISPNQQVYTALVHGYIKAERM----------------EDAMKILKQMTECNIKPDLIL 536
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
+ + C ++++++ L+L EM S+GI
Sbjct: 537 YGSIIWGHCSQRKLEETKLIL---EEMKSRGI 565
>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
Length = 814
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 99/201 (49%), Gaps = 14/201 (6%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G+ YN M++ L K+ G E +K +D + ++ A + T + +L
Sbjct: 255 GFPPDAIAYNTMIDGLAKA---GHAQEALKVLDNM----LAKACVPTEV------TYGIL 301
Query: 185 MDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+++L K ++ A ++F + +S I+ LIHG+ K+ + A EM + G+
Sbjct: 302 VNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGY 361
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD +++T I+ C+ +F + + +EM GCKP+V+T T ++ L K ++ A +
Sbjct: 362 RPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFR 421
Query: 304 VYEKMKSDDCLTDTSFYSSLI 324
+ + M + C D+ Y L+
Sbjct: 422 IMKGMIAHGCFPDSVTYICLL 442
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 74/361 (20%), Positives = 140/361 (38%), Gaps = 51/361 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA Q G+ H TYN ++ L K + + + +E+ L G ++ R
Sbjct: 106 FRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEM--LKAGIAPNTFSFNILIRS 163
Query: 177 DTRAM----SVLMDTLVKRNSVAHAYKVFLKFKDCI---SLSSQIFDV------------ 217
R +V ++KR FL DC+ + + F+V
Sbjct: 164 FARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPP 223
Query: 218 -------LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ K ++ A++ +M + GF PD ++Y I+ + ++ L
Sbjct: 224 DRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVL 283
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
M K C P+ +T I++++L KA + A +++ M + ++ Y+SLI +K+
Sbjct: 284 DNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKS 343
Query: 331 VRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
R + + MI C A K +++ CKP+ T+
Sbjct: 344 GRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTY 403
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDE 430
++ R+ + +M+ M++ G P T+ L + K L A + +DE
Sbjct: 404 TTIIQGLSKIGRVAN---AFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDE 460
Query: 431 L 431
L
Sbjct: 461 L 461
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 78/204 (38%), Gaps = 18/204 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ L G C + D A +EM + G +PD +Y C I + K EM
Sbjct: 616 YTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMI 675
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
KG KP+V T T ++ AL A + EA +E M + L + +
Sbjct: 676 GKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGS---------------VM 720
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
IY+ +I C + ALKL + + P T A + + L+
Sbjct: 721 IYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQ---ELL 777
Query: 395 REMLSKGIVPQESTHKMLAEELEK 418
+EM + G P +T + + L K
Sbjct: 778 QEMAAGGSPPHAATFTAILDGLRK 801
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 21/201 (10%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR--KVDYTLKEMQE 275
+I G CKT + D A + + M G PD +Y I CR ++ R + L +++
Sbjct: 512 IIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEM 571
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335
G P +T T + L K ++ A+K+ E+ S D Y++L
Sbjct: 572 VGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTAL------------ 619
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
+ C + + A+ L Q++ PD + + K+++D
Sbjct: 620 ----CTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLED---ACKFFD 672
Query: 396 EMLSKGIVPQESTHKMLAEEL 416
EM+ KG P +T+ L + L
Sbjct: 673 EMIGKGQKPTVATYTALVQAL 693
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
S I+D LIHG+CK K D A K ++M G P V+ + R K L
Sbjct: 718 SVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELL 777
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+EM G P T T ++ L K+ + + LK+ ++
Sbjct: 778 QEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQE 814
>gi|218191356|gb|EEC73783.1| hypothetical protein OsI_08468 [Oryza sativa Indica Group]
Length = 616
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 126/289 (43%), Gaps = 36/289 (12%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+D L K A + + + ++ L GWC+ + + A ++ M + G
Sbjct: 171 LLDALSKSRHAGKAASLVRALEQRFTPDVVTYNTLADGWCRVKDTSRALDVLRLMVESGI 230
Query: 244 SPDGVSYTCFIEHYCREKDFRKV-DYTLKEMQEKG-----CKPSVITCTIVMHALEKAKQ 297
+P +Y ++ + R R D+ L +M+++G CKP V++ T ++H L A Q
Sbjct: 231 APTKTTYNIILKGFFRAGQLRHAWDFFL-QMKKRGSKDESCKPDVVSYTTMVHGLGVAGQ 289
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIYNT 338
+ +A KV+++M + C + Y++LI ++ K + Y
Sbjct: 290 LEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMLVKGYVPNVVTYTV 349
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+I C + LKL ++++ C+P +T+ ++ + M+ G L+L +M
Sbjct: 350 LIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEMEKG---LDLFEKM- 405
Query: 399 SKG--IVPQESTHKMLAEEL----EKKSLGNAKERIDELLTHATEQRTF 441
SKG +P + T+ ++ + + + A +DE++ R F
Sbjct: 406 SKGEECLPNQDTYNIIISAMFMRKRAEDMVLAARMVDEMVDRGYLPRRF 454
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 136/313 (43%), Gaps = 66/313 (21%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDE-----------LSNGYVSLAAMSTVMRRLDT-RA 180
+N++++AL KS+ G LV+ +++ L++G+ + S R LD R
Sbjct: 168 FNSLLDALSKSRHAGKAASLVRALEQRFTPDVVTYNTLADGWCRVKDTS---RALDVLRL 224
Query: 181 M------------SVLMDTLVKRNSVAHAYKVFLKFK-----------DCISLSSQIFDV 217
M ++++ + + HA+ FL+ K D +S +
Sbjct: 225 MVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVS-----YTT 279
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
++HG + + A+K EM + G +P +Y I+ C++ + M KG
Sbjct: 280 MVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMLVKG 339
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337
P+V+T T+++ L A +I LK+ E+MK+ C Y+ LI R+L
Sbjct: 340 YVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLI-------RYLF-- 390
Query: 338 TMISSACVRSEEG---NALKLRQKIEE-DSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
EEG L L +K+ + + C P+ +T+ + +KR +D +L +
Sbjct: 391 ----------EEGEMEKGLDLFEKMSKGEECLPNQDTYNIIISAMFMRKRAEDMVLAARM 440
Query: 394 MREMLSKGIVPQE 406
+ EM+ +G +P+
Sbjct: 441 VDEMVDRGYLPRR 453
>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
Length = 833
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 28/268 (10%)
Query: 161 NGYVSLAAM--STVMR---RLDTRAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQ 213
NG+V A M V+R LDT + L+ +R+ + A++VF K ++ +S
Sbjct: 141 NGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEESCRPNSV 200
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ +LIHG C+ + + A + +EM + G P +YT I+ C K L EM
Sbjct: 201 TYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 260
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM-KSDDCLTDTSFYSSLIFILSKAVR 332
K C P+V T TI++ L + +I EA V+ KM K C +F
Sbjct: 261 ATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITF------------- 307
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
N +I+ C +A +L +E+ +CKP+ T+ ++ C + L
Sbjct: 308 ----NALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL--- 360
Query: 393 LMREMLSKGIVPQESTHKMLAEELEKKS 420
L+R ++ G++P T+ +L + K+
Sbjct: 361 LLRRVVDNGLLPDRVTYNILVDGFCKEG 388
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/328 (20%), Positives = 138/328 (42%), Gaps = 51/328 (15%)
Query: 132 TYNAMVEALGKSKKF----GLMWELVKE--------IDELSNGY------VSLAAMSTVM 173
TY +++ L + K G+ +++K + L NGY VS + +VM
Sbjct: 271 TYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVM 330
Query: 174 RRLD----TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS---LSSQI-FDVLIHGWCKT 225
+ + R + LM+ L + V+ +YK FL + + L ++ +++L+ G+CK
Sbjct: 331 EKGNCKPNIRTYNELMEGLCR---VSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKE 387
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
+ + A M G PDG ++T I+ C+ + + L M +KG +T
Sbjct: 388 GQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTF 447
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------ 333
T ++ K + + ++E M + CLT ++ + L K +
Sbjct: 448 TALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMK 507
Query: 334 -------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
+ + +I C E +LK+ +++++ C P+ T+ + C+ R+++
Sbjct: 508 YGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEE 567
Query: 387 GMLVLNLMREMLSKGIVPQESTHKMLAE 414
+L M S G+ P T+ +L +
Sbjct: 568 AETIL---FSMSSFGVSPNHFTYAVLVK 592
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 105/278 (37%), Gaps = 53/278 (19%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL 166
+V ++ K F G + TYN +V+ K + + + +
Sbjct: 351 RVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFN------------ 398
Query: 167 AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKT 225
+M++ D + L+D L K + A + K ISL F LI G CK
Sbjct: 399 -SMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKI 457
Query: 226 RKS-------------------------------DY----AQKAMKEMFQHGFSPDGVSY 250
K+ DY A + +M ++G P V++
Sbjct: 458 GKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTH 517
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T IE +CR + L+ M++ GC P+V T TI+++ L ++ EA + M S
Sbjct: 518 TILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSS 577
Query: 311 DDCLTDTSFYSSLIFILSKAVR----FLIYNTMISSAC 344
+ Y+ L+ KA R F I +TM+ + C
Sbjct: 578 FGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGC 615
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
+LI G C+ ++ + K ++ M Q G SP+ +YT I C + + L M
Sbjct: 519 ILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSF 578
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--FILSK 329
G P+ T +++ A KA ++ A ++ M + C ++ YS+L+ F+LS
Sbjct: 579 GVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSN 633
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 159 LSNGYVSLAAMSTVMRRLDTRAMS-------VLMDTLVKRNSVAHAYKVFLKFKDCISLS 211
LSN + A+S+ LD R++S L + + V HA K+ + K C +
Sbjct: 631 LSNTAIGARALSST-GDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPT 689
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
+++ L+ G CK + A + ++M +HG PD + + IEHYC+ + +K
Sbjct: 690 EDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDK-AISSIIEHYCKTCKYDNCLEFMK 748
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+ + PS + V+H L ++ EA K+ +
Sbjct: 749 LVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDL 785
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/156 (17%), Positives = 67/156 (42%), Gaps = 14/156 (8%)
Query: 127 MHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
+ T T+N ++ALGK K + E + + + + +V+ ++L++
Sbjct: 476 LTTAHTFNCFLDALGKDYK-------LNEANAMLGKMMKYGLVPSVVTH------TILIE 522
Query: 187 TLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+ A + K+ + K S + + ++I+G C + + A+ + M G SP
Sbjct: 523 GHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSP 582
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
+ +Y ++ + + + + M + GC+P+
Sbjct: 583 NHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPN 618
>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
Length = 816
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 138/329 (41%), Gaps = 47/329 (14%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+ G +P TYN M++A K +L+K++ E +G+V D
Sbjct: 385 NRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIE--DGHVP-----------DVVTY 431
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK--DCISLSSQIFDVLIHGWCKTRKSDYA-QKA---- 234
+ +MD L K + V A +F + + C + + + +I G C+ K D A Q+
Sbjct: 432 NTVMDGLCKSSRVEEALLLFNEMERLGCTP-NRRSHNTIILGLCQQSKIDQACQRGKLDE 490
Query: 235 ----MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
+K M G PD V+Y+ I C + L++M ++ CKP+V+T ++H
Sbjct: 491 AFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIH 550
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF-------------ILSKAV------ 331
L KA +I EA +V + M S D Y++L+ +LS V
Sbjct: 551 GLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAP 610
Query: 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+ Y ++S C + A + +++ C P+ T+ + C ++ G L
Sbjct: 611 NVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGG---L 667
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEKKS 420
L EM+ GI P + LA EL K
Sbjct: 668 KLFGEMVCAGISPDHVVYGTLAAELCKSG 696
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 123/287 (42%), Gaps = 33/287 (11%)
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
R ++++ L + + + A ++F K + +S S + +LI G K K + A+ ++
Sbjct: 289 RGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQK 348
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
+ G +P V+YT I C F +M +GC PS +T +++ A K
Sbjct: 349 LLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGM 408
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTM-------------- 339
+ EA + +KM D + D Y++++ L K+ R L++N M
Sbjct: 409 LEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNT 468
Query: 340 ----------ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
I AC R + A +L +++ +D PD T++ + C R+ D
Sbjct: 469 IILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDAR- 527
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHA 435
+L+ +M+ + P T L L K + A+E +D +++
Sbjct: 528 --HLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG 572
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 108/243 (44%), Gaps = 27/243 (11%)
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+ LIHG CK + A++ + M G SPD V+Y + +CR + L +M
Sbjct: 546 NTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVA 605
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-- 333
+G P+V+T T ++ L KA ++ EA V+ +MKS C + Y++LI A +
Sbjct: 606 RGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDG 665
Query: 334 -----------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC---ETHAR 373
++Y T+ + C AL++ ++ E S + + E +
Sbjct: 666 GLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRE-SLRSEAWGDEVYRF 724
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEELEKKSLGNAKERIDELL 432
++ +M+ + L +R+M+ G +P E ++A + G A+ ++E++
Sbjct: 725 AVDGLLEAGKME---MALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIM 781
Query: 433 THA 435
A
Sbjct: 782 DLA 784
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 187 TLVKRNSVAHAYKVFLKFK------DCISLSSQIFDV-----LIHGWCKTRKSDYAQKAM 235
T+V +N++ H + K D + S Q DV L+HG C+ +++ A++ +
Sbjct: 541 TVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELL 600
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+M G +P+ V+YT + C+ + +M+ GC P++ T T ++ A
Sbjct: 601 SDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSA 660
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
Q+ LK++ +M D Y +L L K+ R
Sbjct: 661 GQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGR 697
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 140/349 (40%), Gaps = 78/349 (22%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
YN +V AL K+ + EL + + E + LAA S LD+ + LMD+
Sbjct: 147 AYNIVVVALCKAARVDDALELARTMSEKR---IPLAAGS-----LDS-VLVGLMDS---- 193
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
+ A +V+ + + L + +VL+ G+C + D A++ ++ M +PD VSY
Sbjct: 194 GRIDEALQVYRENRREPCLVT--LNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYC 251
Query: 252 CFIEHYCR----EKDFR----------------------------------KVDYTLK-- 271
++ C+ E+ R ++D ++
Sbjct: 252 TVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMF 311
Query: 272 -EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
+M E+ P + I++ L KA ++ +A +++K+ T Y+SLI L A
Sbjct: 312 EKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMA 371
Query: 331 VRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
F + YN MI ++C R A L +K+ ED PD T+
Sbjct: 372 NSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTY 431
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ C R+++ +L+ N EM G P +H + L ++S
Sbjct: 432 NTVMDGLCKSSRVEEALLLFN---EMERLGCTPNRRSHNTIILGLCQQS 477
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 196 HAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255
A K+F ++C S +++VLI K ++++ +K ++ M G PD ++T +
Sbjct: 28 EAVKIFSLMEECHSPYPDVYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILC 87
Query: 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315
C+ + + + EM+ + P T + + H L + A ++ E M +
Sbjct: 88 GLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIMP----VA 143
Query: 316 DTSFYSSLIFILSKAVR 332
++S Y+ ++ L KA R
Sbjct: 144 NSSAYNIVVVALCKAAR 160
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 23/160 (14%)
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M ++G P+ + T V+ + +EA+K++ M ++C S Y
Sbjct: 1 MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLM--EEC---HSPYPD---------- 45
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
+YN +I S R E K+ Q + + C PD T L C +M + LV
Sbjct: 46 --VYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELV-- 101
Query: 393 LMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
M EM S+ I P +T LA EL L + ER +LL
Sbjct: 102 -MDEMRSRMIPPYFATSSFLAHEL---CLRGSMERAFQLL 137
>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 418
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 131/324 (40%), Gaps = 46/324 (14%)
Query: 112 LKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM---------WEL---VKE 155
LK F W + GY + +N ++ + K + L W L V
Sbjct: 114 LKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVS 173
Query: 156 IDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205
+ L NGY+ L AM + D SVL++ L K + + A ++F +
Sbjct: 174 FNTLMNGYIKLGDLDEGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEML 233
Query: 206 DCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
D + + + F LI G CK R+ D A + K+M SPD ++Y I C++ D +
Sbjct: 234 DNGLVPNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLK 293
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ + EM KG KP IT T ++ K + A + ++M ++ D Y++L
Sbjct: 294 QAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTAL- 352
Query: 325 FILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
IS C +A K+ +++ KP+ T+ + C K +
Sbjct: 353 ---------------ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCEKGDV 397
Query: 385 KDGMLVLNLMREMLSKGIVPQEST 408
G L L++EM G +P T
Sbjct: 398 WTG---LKLLKEMQRDGYMPSVVT 418
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 122/281 (43%), Gaps = 35/281 (12%)
Query: 148 LMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC 207
LM VKE E+ A++ R + + LM+ +K + +++ K+
Sbjct: 142 LMHSFVKE-GEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRL----KNA 196
Query: 208 ISLSS-----QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
+ S + VLI+G CK K D A + EM +G P+GV++T I+ +C+
Sbjct: 197 MQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKN-- 254
Query: 263 FRKVDYTL---KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF 319
R+VD + K+M + P +IT +++ L K + +A + ++M D
Sbjct: 255 -RRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK-- 311
Query: 320 YSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC 379
+ Y T+I C + A + R+++ +++ + D + + C
Sbjct: 312 --------------ITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLC 357
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ R D ++REMLS G+ P+ T+ M+ E +K
Sbjct: 358 QEGRSVDAE---KMLREMLSVGLKPEIGTYTMIINEFCEKG 395
>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 612
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 109/244 (44%), Gaps = 33/244 (13%)
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMK 236
+V +++ + + K D I L +++ F +L+ G+CK + A+ +
Sbjct: 231 VVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLA 290
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M + G PD V+Y ++ YC K K M + G +V + I+++ K K
Sbjct: 291 MMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIK 350
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYN 337
++ EA+ ++++M + + D Y+SLI L K+ + + YN
Sbjct: 351 KVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYN 410
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+++ + C + A+ L K++++ +PD T+ + C R+KD N+ ++
Sbjct: 411 SILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQ---NIFEDL 467
Query: 398 LSKG 401
L KG
Sbjct: 468 LVKG 471
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 113/261 (43%), Gaps = 29/261 (11%)
Query: 166 LAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCK 224
LA M + D LMD V A +F + ++ + Q ++++I+G+CK
Sbjct: 289 LAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCK 348
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK---EMQEKGCKPS 281
+K D A KEM PD V+Y I+ C+ K+ Y LK EM ++G
Sbjct: 349 IKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSG---KISYALKLVDEMHDRGVPHD 405
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------- 333
IT ++ AL K Q+ +A+ + KMK + D Y+ LI L K R
Sbjct: 406 KITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFE 465
Query: 334 -----------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
Y MI C AL L K+E++ C P+ +T+ + + +K
Sbjct: 466 DLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTY-EIIILSLFEK 524
Query: 383 RMKDGMLVLNLMREMLSKGIV 403
D + L+REM+++G++
Sbjct: 525 DEND--MAEKLLREMIARGLL 543
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/305 (18%), Positives = 129/305 (42%), Gaps = 29/305 (9%)
Query: 152 LVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI--- 208
L+ +L + + S + + ++++ ++ + TL+K + L F D +
Sbjct: 97 LINCFSQLGHTHFSFSVFANILKK-GYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVAL 155
Query: 209 --SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
L+ + LI+G CK ++ A + ++ + P+ V Y I+ C+ K +
Sbjct: 156 GFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEA 215
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-- 324
EM KG P V+T + ++ ++ +A+ ++ KM S++ D +S L+
Sbjct: 216 FDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDG 275
Query: 325 ---------------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
++ + ++ + Y +++ C+ + A + + + +
Sbjct: 276 FCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTAN 335
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKE 426
+++ + C K++ + M NL +EM K I+P T+ L + L K + A +
Sbjct: 336 VQSYNIMINGFCKIKKVDEAM---NLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALK 392
Query: 427 RIDEL 431
+DE+
Sbjct: 393 LVDEM 397
>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
Length = 586
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/329 (20%), Positives = 137/329 (41%), Gaps = 40/329 (12%)
Query: 127 MHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
+++P+ ++N +++ + + + ELV+ ++E DT +++
Sbjct: 249 VYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSP-------------DTVTHNII 295
Query: 185 MDTLVKRNSVAHAYKVFLKF-KDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
+D L + N V+ ++V + +D + + + + F +I G+CK K + A +M G
Sbjct: 296 VDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASG 355
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
P+ V+Y I Y + D ++M C P V+T + ++ + Q+ +AL
Sbjct: 356 IMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDAL 415
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSK--------------------AVRFLIYNTMISS 342
+++ M + +S +I L K A + IYN +I
Sbjct: 416 RIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLNELNLRPDIAPQAFIYNPVIDV 475
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C + A +R+ +EE C+PD T+ + C K R+ + ++ + EM+ G
Sbjct: 476 LCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFH---EMVEAGC 532
Query: 403 VPQESTHKMLAEELEKKSLGNAKERIDEL 431
P T L K + N + + L
Sbjct: 533 SPDSITVNCFISCLLKAGMPNEVDHVMRL 561
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQ 232
R++ A + LM +L+ R V +F ++ S + F+V+I G C+ + A
Sbjct: 215 RVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKAL 274
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG-CKPSVITCTIVMHA 291
+ ++ M + G SPD V++ ++ CR + + L+ +Q G C P+V+T T V+
Sbjct: 275 ELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISG 334
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN 351
KA ++ +A+ VY M + + +T + YN +I+ + G+
Sbjct: 335 YCKAGKLEDAMAVYNDMVASGIMPNT----------------VTYNVLINGYGKVGDLGS 378
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A+++ Q++ C PD T + + C ++ D L + +M I P T +
Sbjct: 379 AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDA---LRIWSDMAQHRIQPNVYTFSI 435
Query: 412 LAEELEKKS 420
+ L K++
Sbjct: 436 IIHSLCKQN 444
>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 917
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 19/185 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ ++I G CK + D A++ KEM G PD +SYT I +CR ++ Y EM
Sbjct: 642 YSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMV 701
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ G +P V T ++++ L K ++ EA ++ E M C+ +T +
Sbjct: 702 DIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNT----------------V 745
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
Y T++ C+ A +L K+++ C PD T+ +K C +K L L
Sbjct: 746 TYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTA---LELH 802
Query: 395 REMLS 399
++MLS
Sbjct: 803 KKMLS 807
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 26/213 (12%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ ++I G CK R+ D A++ KEM G PD +SYT I +C + K EM
Sbjct: 168 YSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEML 227
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ G +P V T +++ K ++ EA ++ E M C+ D +
Sbjct: 228 DVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILD----------------IV 271
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
Y+T+I C++ A +L +++ C+PD + +K C ++ + L+L
Sbjct: 272 TYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKIN---IALHLH 328
Query: 395 REMLS-------KGIVPQESTHKMLAEELEKKS 420
+EML+ K I P +T ML + L K+
Sbjct: 329 QEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEG 361
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ ++I G CK R+ D A++ +EM G PD +SYT I +C + K EM
Sbjct: 461 YSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEML 520
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ G +P V T ++++ L K ++ EA K+ E + C+ D +
Sbjct: 521 DVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDV----------------V 564
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
T++ C++ A +L K+++ C P+ T A +K C +K + L L
Sbjct: 565 TCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIK---IALELH 621
Query: 395 REMLS 399
+ MLS
Sbjct: 622 KNMLS 626
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 110/247 (44%), Gaps = 25/247 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKT 225
+ +A+ V+ D ++ S+ H + K+KD L +++ F VLI CK
Sbjct: 664 EMKALGVIPD-VISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKE 722
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
K A + ++ M Q G P+ V+YT ++ C + +MQ+ GC P V+T
Sbjct: 723 GKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTY 782
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
+M L + I AL++++KM SD T+F +I Y+ +I C
Sbjct: 783 GTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVIS----------YSIIIDGLCK 832
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
E A +L ++++ P+ ++ + C +++D +L EM+ +G+
Sbjct: 833 HGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAK---HLFNEMVDQGVQLN 889
Query: 406 ESTHKML 412
T+ ++
Sbjct: 890 AVTYSVM 896
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 117/285 (41%), Gaps = 47/285 (16%)
Query: 153 VKEIDELSNGYVSLAAMSTVMRRL---DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209
VK ++E LAAM+ +MRR D S+ D ++
Sbjct: 23 VKRVNE------GLAAMAGIMRRGYIPDIVTYSIRPD---------------------VT 55
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
SS + D+L CK K A + ++ M Q G D V+Y+ I+ C E + +
Sbjct: 56 TSSMLIDIL----CKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWL 111
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
MQ+ GC+P IT +M L + I AL+++++M L DT Y +
Sbjct: 112 FMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEM-----LNDTGRYG-----IKC 161
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ Y+ +I C E A +L ++++ PD ++ + CH + +
Sbjct: 162 KPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKC 221
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTH 434
+ N EML GI P +T +L + K+ + E++ H
Sbjct: 222 LFN---EMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVH 263
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 111/248 (44%), Gaps = 24/248 (9%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV-----------LIHGWCKTRKSDYAQ 232
+M ++ ++ H + + K++ L +++ DV LI CK K A
Sbjct: 489 IMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEAN 548
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
K ++ + Q G D V+ T ++ C + K +MQ+ GC P+V+TC +M L
Sbjct: 549 KLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGL 608
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA 352
++ I AL++++ M L+DTS Y ++ + Y+ +I C E A
Sbjct: 609 CQSGNIKIALELHKNM-----LSDTSPYG-----INCKPNAISYSIIIDGLCKCGREDEA 658
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+L ++++ PD ++ + C + KD + N EM+ G+ P +T +L
Sbjct: 659 RELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFN---EMVDIGVQPDVTTFSVL 715
Query: 413 AEELEKKS 420
+ L K+
Sbjct: 716 IDMLCKEG 723
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 17/213 (7%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
++ SS + D+L CK K A + ++ M Q G D V+Y+ I+ C E +
Sbjct: 347 VTTSSMLIDIL----CKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEAT 402
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ MQ+ GC+P IT +M L + I AL+++++M L DT Y +
Sbjct: 403 WLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEM-----LNDTGRYG-----I 452
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+ Y+ +I C E A +L ++++ PD ++ + C + +
Sbjct: 453 KCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKA 512
Query: 388 MLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ N EML GI P +T +L + L KK
Sbjct: 513 KCLFN---EMLDVGIQPDVTTSSVLIDMLCKKG 542
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ ++I G CK + D A++ KEM G P+ +SYT I +CR + EM
Sbjct: 823 YSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMV 882
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
++G + + +T ++++H K QI +AL ++KM+++
Sbjct: 883 DQGVQLNAVTYSVMIHGFCKEGQIDKAL--FQKMEAN 917
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
+T + L+ L + ++ A ++F+K + L + + L+ G C+T A +
Sbjct: 743 NTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELH 802
Query: 236 KEMF----QHG--FSPDGVSYTCFIEHYC---REKDFRKVDYTLKEMQEKGCKPSVITCT 286
K+M Q+G F PD +SY+ I+ C RE + R++ KEM+ G P+VI+ T
Sbjct: 803 KKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEAREL---FKEMKALGVIPNVISYT 859
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
++H ++ ++ +A ++ +M + YS +I
Sbjct: 860 SLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMI 897
>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 418
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 134/318 (42%), Gaps = 52/318 (16%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRL------------- 176
+T ++E L K K F L+W + D L GY SL + +M R
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWGFYE--DSLECGYPASLYFFNILMHRFCKEGEIKLAQSVF 159
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF------LKFKDCISLSS-----QIFDVLIHGWCKT 225
D L T V N++ + Y + K+ + S + VLI+G CK
Sbjct: 160 DAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKE 219
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL---KEMQEKGCKPSV 282
K DYA + EM +G P+GV++T I+ +C+ +VD + K+M + P +
Sbjct: 220 SKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNG---RVDLAMEIYKQMLSQSLSPDL 276
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISS 342
IT +++ L K + +A + ++M D + Y T+I
Sbjct: 277 ITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK----------------VTYTTLIDG 320
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
+C + A + R+++ +++ + D + + C + R D ++REMLS G+
Sbjct: 321 SCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGL 377
Query: 403 VPQESTHKMLAEELEKKS 420
P+ T+ M+ E KK
Sbjct: 378 KPEIGTYTMIINEFCKKG 395
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 111/264 (42%), Gaps = 30/264 (11%)
Query: 156 IDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205
+ L NGY+ L AM + D SVL++ L K + + +A ++F +
Sbjct: 174 FNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEML 233
Query: 206 DCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
D + + + F LI G CK + D A + K+M SPD ++Y I C++ D +
Sbjct: 234 DNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLK 293
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ + EM KG KP +T T ++ K + A + ++M ++ D Y++L
Sbjct: 294 QAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTAL- 352
Query: 325 FILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
IS C +A K+ +++ KP+ T+ + C K +
Sbjct: 353 ---------------ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397
Query: 385 KDGMLVLNLMREMLSKGIVPQEST 408
G LM+EM G VP T
Sbjct: 398 WTGS---KLMKEMQRDGYVPSVVT 418
>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 831
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 128/302 (42%), Gaps = 33/302 (10%)
Query: 112 LKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMST 171
L F A+T+TG T +Y ++ K K ++ E+++
Sbjct: 352 LNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQG----------- 400
Query: 172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDY 230
+ + + S+++D V+ A+A+ VF + I +++L++ +CK + +
Sbjct: 401 --IKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNR 458
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A + + M P +YT I+ + + D R T+++M+ G +PS T ++MH
Sbjct: 459 ALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMH 518
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEG 350
L +A Q+ A + ++M + Y++LI AC+ + G
Sbjct: 519 GLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIE---------------GYACI-GDMG 562
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A K +I+E KPD +A LK CC RM+ L + EM + G+ +
Sbjct: 563 LAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQS---TLAITAEMAAAGVPMNNYIYN 619
Query: 411 ML 412
+L
Sbjct: 620 IL 621
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ +++ I+++L+ GW + A M++M G +PD SYT FI C+ D K
Sbjct: 611 VPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGLTPDIHSYTSFINACCKAGDMLKAT 670
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF-I 326
T+++M+++G +P++ T ++H A +AL Y++MKS + D Y ++ +
Sbjct: 671 ETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKALICYDEMKSAGMIPDKPLYHCIMTSL 730
Query: 327 LSKAV 331
LS+A
Sbjct: 731 LSRAA 735
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKE 237
++LMD V +V VF LK + LS + + LI+ + K K D A + E
Sbjct: 336 NMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNE 395
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M G + +Y+ I+ Y + D ++M G KP IT I+M+A K Q
Sbjct: 396 MEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQ 455
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ AL++ +M+S DC Y+ +I
Sbjct: 456 MNRALELLARMESGDCPPTLRTYTIII 482
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 60/134 (44%)
Query: 197 AYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256
A KV FK + +L++ + K A+ A + M G P+ SYT I
Sbjct: 177 ARKVVDAFKRIKKPKQRDHTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNLIHA 236
Query: 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316
Y +D R ++EM+ +G P+ T ++++ + + A + +++ S++ +
Sbjct: 237 YAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWHHN 296
Query: 317 TSFYSSLIFILSKA 330
Y+++I KA
Sbjct: 297 DVIYNNIIHAYCKA 310
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/256 (17%), Positives = 96/256 (37%), Gaps = 36/256 (14%)
Query: 196 HAYKVFLKFKDCI-----------SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
HAY V + I S ++ + V+I G+ + + A++ + +
Sbjct: 235 HAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWH 294
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
+ V Y I YC+ + + + + M+E+G + ++ ++M + + + L V
Sbjct: 295 HNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNV 354
Query: 305 YEKMKS--DDCLTDTSF-YSSLIFILSKAVRF-------------------LIYNTMISS 342
+ ++K+ + L+ T Y LI + SK + Y+ +I
Sbjct: 355 FRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDG 414
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
+ NA + + + KPD T+ + C +M L L+ M S
Sbjct: 415 YVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMN---RALELLARMESGDC 471
Query: 403 VPQESTHKMLAEELEK 418
P T+ ++ + K
Sbjct: 472 PPTLRTYTIIIDGFMK 487
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 64/334 (19%), Positives = 121/334 (36%), Gaps = 53/334 (15%)
Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT-----RAMSV 183
T TY +++ K + +E V+++ +++ S A + +M L RA S+
Sbjct: 474 TLRTYTIIIDGFMKIGDLRMAFETVRDM-KMAGFRPSAATYNVIMHGLAQAGQMDRAASI 532
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+ + +V + + + + LI G+ A K + + G
Sbjct: 533 IDEMVVA----------------GVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGL 576
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD ++Y ++ C+ + EM G + I++ + ++EA
Sbjct: 577 KPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASD 636
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-------------------IYNTMISSAC 344
+ +KM+ + D Y+S I KA L Y T+I
Sbjct: 637 IMQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHGWA 696
Query: 345 VRSEEGNALKLRQKIEEDSCKPD-----CETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
S AL +++ PD C + + ++ + DG VL + EM+
Sbjct: 697 SASYPEKALICYDEMKSAGMIPDKPLYHCIMTSLLSRAAVARETVFDG--VLRVTSEMVD 754
Query: 400 KGIVPQESTHK-----MLAEELEKKSLGNAKERI 428
+GI +T K ++ E + L A ERI
Sbjct: 755 QGICVDFATAKHWQRFLIKAERQSGDLTRAVERI 788
>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
mitochondrial [Vitis vinifera]
Length = 876
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 122/269 (45%), Gaps = 30/269 (11%)
Query: 161 NGYVSLAAM--STVMR---RLDTRAMSVLMDTLVKRNSVAHAYKVFLKF---KDCISLSS 212
NG+V A M V+R LDT + L+ +R+ + A++VF K ++C +S
Sbjct: 184 NGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENC-RPNS 242
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
+ +LIHG C+ + + A + +EM + G P +YT I+ C K L E
Sbjct: 243 VTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDE 302
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM-KSDDCLTDTSFYSSLIFILSKAV 331
M K C P+V T TI++ L + +I EA V+ KM K C +F
Sbjct: 303 MATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITF------------ 350
Query: 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
N +I+ C +A +L +E+ +CKP+ T+ ++ C + L
Sbjct: 351 -----NALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL-- 403
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEKKS 420
L+R ++ G++P T+ +L + K+
Sbjct: 404 -LLRRVVDNGLLPDRVTYNILVDGFCKEG 431
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 124/291 (42%), Gaps = 39/291 (13%)
Query: 157 DELSNGY------VSLAAMSTVMRRLD----TRAMSVLMDTLVKRNSVAHAYKVFLKFKD 206
+ L NGY VS + +VM + + R + LM+ L + V+ +YK FL +
Sbjct: 351 NALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCR---VSKSYKAFLLLRR 407
Query: 207 CIS---LSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
+ L ++ +++L+ G+CK + + A M G PDG ++T I+ C+
Sbjct: 408 VVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGR 467
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
+ + L M +KG +T T ++ K + + ++E M + CLT ++
Sbjct: 468 LEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNC 527
Query: 323 LIFILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDS 363
+ L K + + + +I C E +LK+ +++++
Sbjct: 528 FLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAG 587
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
C P+ T+ + C+ R+++ +L M S G+ P T+ +L +
Sbjct: 588 CSPNVYTYTIIINGLCNNGRVEEAETIL---FSMSSFGVSPNHFTYAVLVK 635
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 105/278 (37%), Gaps = 53/278 (19%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL 166
+V ++ K F G + TYN +V+ K + + + +
Sbjct: 394 RVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFN------------ 441
Query: 167 AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKT 225
+M++ D + L+D L K + A + K ISL F LI G CK
Sbjct: 442 -SMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKI 500
Query: 226 RKS-------------------------------DY----AQKAMKEMFQHGFSPDGVSY 250
K+ DY A + +M ++G P V++
Sbjct: 501 GKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTH 560
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T IE +CR + L+ M++ GC P+V T TI+++ L ++ EA + M S
Sbjct: 561 TILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSS 620
Query: 311 DDCLTDTSFYSSLIFILSKAVR----FLIYNTMISSAC 344
+ Y+ L+ KA R F I +TM+ + C
Sbjct: 621 FGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGC 658
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
+LI G C+ ++ + K ++ M Q G SP+ +YT I C + + L M
Sbjct: 562 ILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSF 621
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--FILSK 329
G P+ T +++ A KA ++ A ++ M + C ++ YS+L+ F+LS
Sbjct: 622 GVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSN 676
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 159 LSNGYVSLAAMSTVMRRLDTRAMS-------VLMDTLVKRNSVAHAYKVFLKFKDCISLS 211
LSN + A+S+ LD R++S L + + V HA K+ + K C +
Sbjct: 674 LSNTAIGARALSST-GDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPT 732
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
+++ L+ G CK + A + ++M +HG PD + + IEHYC+ + +K
Sbjct: 733 EDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDK-AISSIIEHYCKTCKYDNCLEFMK 791
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+ + PS + V+H L ++ EA K+ +
Sbjct: 792 LVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDL 828
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/156 (17%), Positives = 67/156 (42%), Gaps = 14/156 (8%)
Query: 127 MHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
+ T T+N ++ALGK K + E + + + + +V+ ++L++
Sbjct: 519 LTTAHTFNCFLDALGKDYK-------LNEANAMLGKMMKYGLVPSVVTH------TILIE 565
Query: 187 TLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+ A + K+ + K S + + ++I+G C + + A+ + M G SP
Sbjct: 566 GHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSP 625
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
+ +Y ++ + + + + M + GC+P+
Sbjct: 626 NHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPN 661
>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 114/252 (45%), Gaps = 25/252 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMF 239
++L+ L + A K+ K + LS I +++LI+G+C K D A + ++
Sbjct: 302 NILIGGLCRGKKFGEAVKLVHKVNK-VGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLK 360
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G SP V+Y I Y + ++ +KEM+E+ PS +T TI++ A +
Sbjct: 361 SSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTE 420
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFIL---------SKAVRFL----------IYNTMI 340
+A +++ M+ + D YS LI L SK + L IYNTMI
Sbjct: 421 KACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMI 480
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
C AL+L ++ P+ + ++ + C ++ K+ L+L +M++
Sbjct: 481 HGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLG---QMINS 537
Query: 401 GIVPQESTHKML 412
G+ P S +KM+
Sbjct: 538 GLKPSVSLYKMV 549
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 112/268 (41%), Gaps = 23/268 (8%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
LM L++ N A+ +F + K + L + F ++I G C+ + + + + G
Sbjct: 130 LMCLLIRSNYFDKAWWIFNELKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGL 189
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
SP+ V YT I+ C+ + +M G P+ T +++M+ K E +
Sbjct: 190 SPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQ 249
Query: 304 VYEKMKSDDCLTDTSFYSSLI------FILSKAVR-------------FLIYNTMISSAC 344
+YE MK + + Y+ LI ++ KA + + YN +I C
Sbjct: 250 MYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLC 309
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ G A+KL K+ + P+ T+ + C +M + + N ++ S G+ P
Sbjct: 310 RGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLK---SSGLSP 366
Query: 405 QESTHKMLAEELEK-KSLGNAKERIDEL 431
T+ L K ++L A + + E+
Sbjct: 367 TLVTYNTLIAGYSKVENLAGALDLVKEM 394
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 23/182 (12%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE--LSNGYVSLAAMSTVMRRL----- 176
+G T TYN ++ K + +LVKE++E ++ V+ + RL
Sbjct: 362 SGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEK 421
Query: 177 ---------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIH 220
D SVL+ L ++ A K+F + + +S I++ +IH
Sbjct: 422 ACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIH 481
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G+CK S A + + EM G P+ S+ I CR++ +++ + L +M G KP
Sbjct: 482 GYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKP 541
Query: 281 SV 282
SV
Sbjct: 542 SV 543
>gi|449491189|ref|XP_004158824.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
mitochondrial-like [Cucumis sativus]
Length = 450
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 156/376 (41%), Gaps = 54/376 (14%)
Query: 105 PDKVVEALKCFC---------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE 155
P V EAL +C F W +++ + HT ETYN M++ LGK +F L W L+
Sbjct: 47 PFTVREALDSYCNDWKRSYEFFNWVESECKFDHTTETYNRMLDILGKFFEFDLSWVLINR 106
Query: 156 IDELSNGYVSLAAMSTVMRRL----------------------DTRAMSVLMDTLVKRNS 193
+ + + A + +R D + L+D L +
Sbjct: 107 MRQSPSASPDHATFRILFKRYALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCESRH 166
Query: 194 VAHAYKV-FLKFK--DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A ++ F K + DC S S++I ++++ GW K + +EM + G D SY
Sbjct: 167 VDEAQELCFGKNRKLDCDS-STKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSY 225
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ +++ C+ K KEM++KG K V+ V+HA+ ++ + A +V+ +MK
Sbjct: 226 SIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKE 285
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA----------------LK 354
C + +++I + + RF + M+ R + N L
Sbjct: 286 MGCKPNVVTCNTVIKLFCENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILV 345
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
L ++ + P +T+ L+ ++ LV N M E+ G P E + L +
Sbjct: 346 LFDRMIKYGVHPKMDTYVMLLRKFGRWGFLRPVFLVWNKMEEL---GCSPNECAYNALID 402
Query: 415 ELEKKSLGNAKERIDE 430
L +K + + + DE
Sbjct: 403 ALVEKGMIDMARKYDE 418
>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
Length = 528
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 107/240 (44%), Gaps = 22/240 (9%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
++++ +++L+H + A + ++EM G +PD +Y I +C+E + +K
Sbjct: 248 VAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKAL 307
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ M +G + +V+T T +++AL K Q+ E K++++ D Y++LI
Sbjct: 308 EIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSH 367
Query: 328 SKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
S + + YNT++ C+ A KL ++ E +PD
Sbjct: 368 STSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDL 427
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
T+ + K +KD + + N EM++KG P T+ L + L K G+ E +
Sbjct: 428 VTYNTLISGYSMKGDVKDALRIRN---EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENM 484
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 120/295 (40%), Gaps = 33/295 (11%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G T TYN +V AL + +ELV+E+ G LA D +
Sbjct: 245 ERGVAMTVATYNLLVHALFMDGRGTEAYELVEEM-----GGKGLAP--------DVFTYN 291
Query: 183 VLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+L++ K +V A ++F + + + + LI+ K + K E +
Sbjct: 292 ILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRR 351
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD V Y I + + + + EM++K P +T +M L ++ EA
Sbjct: 352 GIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEA 411
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
K+ ++M D + YNT+IS ++ + +AL++R ++
Sbjct: 412 RKLIDEMTERGIQPD----------------LVTYNTLISGYSMKGDVKDALRIRNEMMN 455
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
P T+ ++ C + D N+++EM+ GI P +ST+ L E L
Sbjct: 456 KGFNPTLLTYNALIQGLCKNGQGDDAE---NMVKEMVENGITPDDSTYISLIEGL 507
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 112/297 (37%), Gaps = 60/297 (20%)
Query: 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDY 230
M R + + ++ R V A + ++ + I+ + + +I GWCK + D
Sbjct: 140 MPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDE 199
Query: 231 AQKAMKEMFQHG-FSPDGVSYTCFIEHYCREKDF------------RKVDYT-------- 269
A K EM G P+ V Y I YC + R V T
Sbjct: 200 AVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLV 259
Query: 270 ---------------LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
++EM KG P V T I+++ K + +AL+++E M
Sbjct: 260 HALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVR 319
Query: 315 TDTSFYSSLIFILSK-------------AVR------FLIYNTMISSACVRSEEGNALKL 355
Y++LI+ LSK AVR ++YN +I+S A ++
Sbjct: 320 ATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEI 379
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
++E+ PD T+ ++ C R+ + L+ EM +GI P T+ L
Sbjct: 380 MGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR---KLIDEMTERGIQPDLVTYNTL 433
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
++ G T TY A++ AL K + V+E D+L + V R R
Sbjct: 314 SRRGVRATVVTYTALIYALSKKGQ-------VQETDKLFDEAV----------RRGIRPD 356
Query: 182 SVLMDTLVKRNS----VAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
VL + L+ +S + A+++ + K I+ ++ L+ G C + D A+K +
Sbjct: 357 LVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLID 416
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM + G PD V+Y I Y + D + EM KG P+++T ++ L K
Sbjct: 417 EMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 476
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLI 324
Q +A + ++M + D S Y SLI
Sbjct: 477 QGDDAENMVKEMVENGITPDDSTYISLI 504
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 26/221 (11%)
Query: 195 AHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A A+ +F F+ + L + F++++ C K A + +++M + P+ V+Y
Sbjct: 96 APAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTV 151
Query: 254 IEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I +C + ++EM+E+ G P+ T V+ K ++ EA+KV+++M
Sbjct: 152 IAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEM---- 207
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
LT + +YN +I C + + AL R ++ E T+
Sbjct: 208 -LTKGEVKPEAV----------MYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATY- 255
Query: 373 RSLKMCCHKKRMKD-GMLVLNLMREMLSKGIVPQESTHKML 412
+ H M G L+ EM KG+ P T+ +L
Sbjct: 256 ---NLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNIL 293
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 24/158 (15%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMSTVMRRLDTRA 180
YNA++ + S +E++ E+++ L G L + + +D
Sbjct: 360 YNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMT 419
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSD 229
+ LV N++ Y + KD + + +++ ++ LI G CK + D
Sbjct: 420 ERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGD 479
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
A+ +KEM ++G +PD +Y IE E D R +D
Sbjct: 480 DAENMVKEMVENGITPDDSTYISLIEGLTTE-DERAID 516
>gi|326524037|dbj|BAJ97029.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 599
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/385 (20%), Positives = 155/385 (40%), Gaps = 52/385 (13%)
Query: 80 SHALSEDHETDVDKVSEILRKRY--PSPDKVVEALKCFCFTWAKTQTGYMH--TPETYNA 135
+H L H D +++ L P+ ++++A+ C + GY H +P +A
Sbjct: 32 AHRLLRRHGADPQRLASALSASGLDPASPRLLDAVLRRCGAASSLALGYFHWCSPSLPSA 91
Query: 136 MVEA----LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT-RAMSVLMDTLVK 190
+ + L K + L + +S + +S V+RRL R + + L
Sbjct: 92 PLPSSLALLAKCFSRASAAPCPSLLAPLPSHLLSASILSPVLRRLPPPRVLPFALSLLSS 151
Query: 191 RNS-------------------VAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYA 231
R + VA A ++ + + + LS + + L++GWC+ K D A
Sbjct: 152 RPAHDHPSLFLSLLESLSKTGHVAAAERLVEELQPRLPLSLRHYTALLYGWCRLAKLDEA 211
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
+ + M G +PD V + + + + F +EM+ + C P+ ++ T +M
Sbjct: 212 KHVLARMKAAGVAPDVVVFNTLLAGFVADGRFEDAFELAREMERRDCPPNAVSYTTLMQG 271
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTMISSACVRS 347
L ++ E ++V+ +M+ C D+ Y +L+ KA R + ++M S +R
Sbjct: 272 LGSKGRVDEVMRVFVEMRRKGCTPDSVTYGTLVTAFCKAGRLSQGYEFLDSM-SRDGLRV 330
Query: 348 EEG----------------NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+ G L+L +++ E C PD + +++ C K + +
Sbjct: 331 DPGVYLGFFVAHEKEQQLEECLELMERMRECRCPPDLNIYNVVIRLSCKLGETKQAIALW 390
Query: 392 NLMREMLSKGIVPQESTHKMLAEEL 416
N E + G+ P T ++ L
Sbjct: 391 N---ETENSGLSPGVDTFAIMVNGL 412
>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 545
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 122/292 (41%), Gaps = 36/292 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY +V+AL K K VKE + + LA M LD S LMD
Sbjct: 270 TYTILVDALCKEGK-------VKEAENV------LAVMVKACVNLDVVVYSTLMDGYCLV 316
Query: 192 NSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
N V +A +VF ++ + ++I+G CK ++ D A +E+ Q PD V+Y
Sbjct: 317 NEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTY 376
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T I+ C+ V EM ++G P VIT ++ AL K + A+ ++ KMK
Sbjct: 377 TSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKD 436
Query: 311 DDCLTDTSFYSSLIFILSK------AVRFL-------------IYNTMISSACVRSEEGN 351
+ ++ L+ L K A+ F Y MI+ C
Sbjct: 437 QAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDE 496
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
AL L+ ++E++ C D T ++ K L+REM+++G++
Sbjct: 497 ALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAE---KLVREMIARGLL 545
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 74/336 (22%), Positives = 143/336 (42%), Gaps = 47/336 (13%)
Query: 129 TPETY--NAMVEALGKSKKFGLMWELVK--EIDELSNGYVSL--------------AAMS 170
TP T+ N ++ +L K++ L K E+ E+ Y +L A S
Sbjct: 55 TPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFS 114
Query: 171 TV--MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI-----SLSSQIFDVLIHGWC 223
V + +L + ++ ++TL+K + K L+F D + LS + +LI+G C
Sbjct: 115 GVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVC 174
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
K ++ A + ++ + + P+ V Y+ I+ C++ + EM KG P V+
Sbjct: 175 KIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVV 234
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------- 329
T +I++ Q+ A+ + +M ++ D Y+ L+ L K
Sbjct: 235 TYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVM 294
Query: 330 -----AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
+ ++Y+T++ C+ +E NA ++ + + PD ++ + C KR+
Sbjct: 295 VKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRV 354
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ LNL E+ K +VP T+ L + L K
Sbjct: 355 DEA---LNLFEEIHQKNMVPDTVTYTSLIDCLCKSG 387
>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
Length = 414
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 137/334 (41%), Gaps = 40/334 (11%)
Query: 127 MHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
+++P+ ++N +++ + + + ELV+ ++E DT ++L
Sbjct: 77 VYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCS-------------PDTVTHNIL 123
Query: 185 MDTLVKRNSVAHAYKVFLKF-KDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
+D L + N V+ ++V + +D + + + + F +I G+CK K + A +M G
Sbjct: 124 VDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASG 183
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
P+ V+Y I Y + D ++M C P V+T + ++ + Q+ +AL
Sbjct: 184 IMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDAL 243
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSK--------------------AVRFLIYNTMISS 342
+++ M + +S +I L K A + IYN +I
Sbjct: 244 RIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDV 303
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C + A +R+ +EE C+PD T+ + C K R+ + ++ EM+ G
Sbjct: 304 LCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIM---FFHEMVEAGC 360
Query: 403 VPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436
P T L K + N + + L +
Sbjct: 361 SPDSITVNCFISCLLKAGMPNEVDHVMRLASGGA 394
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 113/249 (45%), Gaps = 22/249 (8%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQ 232
R++ A + LM +L+ R V +F ++ S + F+V+I G C+ + A
Sbjct: 43 RVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKAL 102
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG-CKPSVITCTIVMHA 291
+ ++ M + G SPD V++ ++ CR + + L+ +Q G C P+V+T T V+
Sbjct: 103 ELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISG 162
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN 351
KA ++ +A+ VY M + + +T + YN +I+ + G+
Sbjct: 163 YCKAGKLEDAMAVYNDMVASGIMPNT----------------VTYNVLINGYGKVGDLGS 206
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A+++ Q++ C PD T + + C ++ D L + +M I P T +
Sbjct: 207 AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDA---LRIWSDMAQHRIQPNVYTFSI 263
Query: 412 LAEELEKKS 420
+ L K++
Sbjct: 264 IIHSLCKQN 272
>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
velutina]
Length = 406
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 129/314 (41%), Gaps = 44/314 (14%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRL----DTRAMSVLM 185
+T ++E L K K F L+W +EI L GY SL + +M R D R +
Sbjct: 83 DTCRKVLEYLMKLKYFKLVWGFYEEI--LECGYPASLYFFNILMHRFCKDGDIRVAQSVF 140
Query: 186 DTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
D + K + S+ ++ L++G+ + D + M G P
Sbjct: 141 DAITKWG---------------LRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQP 185
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D +Y+ I C+E D EM KG P+ +T T ++ K ++ A+++Y
Sbjct: 186 DVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIY 245
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVR 346
++M S L D Y++LI+ L K + Y T+I C
Sbjct: 246 KQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKE 305
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
+A + R+++ +++ + D + + C + R D ++REMLS G+ P
Sbjct: 306 GVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAE---KMLREMLSVGLNPDT 362
Query: 407 STHKMLAEELEKKS 420
T+ M+ E KK
Sbjct: 363 GTYTMIINEFCKKG 376
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 110/273 (40%), Gaps = 42/273 (15%)
Query: 157 DELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVF--LKF 204
+ L NGY+ L + R + D SVL++ L K + + A ++F +
Sbjct: 156 NTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLV 215
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
K + + F LI G CK + D A + K+M PD ++Y I C++ D +
Sbjct: 216 KGLVP-NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLK 274
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK-----VYEKMKSDDCLTDTSF 319
+ + +M KG KP IT T ++ K + A + + E ++ DD
Sbjct: 275 QAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDD------- 327
Query: 320 YSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC 379
++Y +IS C +A K+ +++ PD T+ + C
Sbjct: 328 --------------VVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFC 373
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
K + G L++EM G VP T+ +L
Sbjct: 374 KKGDVWKGS---KLLKEMQRDGHVPSVVTYNVL 403
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
I L ++ LI G C+ +S A+K ++EM G +PD +YT I +C++ D K
Sbjct: 323 IRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGS 382
Query: 268 YTLKEMQEKGCKPSVITCTIVMHA 291
LKEMQ G PSV+T ++M+
Sbjct: 383 KLLKEMQRDGHVPSVVTYNVLMNG 406
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G CK A + K + Q D V YT I C+E + L+EM
Sbjct: 295 YTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREML 354
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G P T T++++ K +++ K+ ++M+ D + Y+ L+
Sbjct: 355 SVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 404
>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
Length = 592
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 138/320 (43%), Gaps = 42/320 (13%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G++ TYN M+ +L +K GL ++ ++ L N M TV+ ++L
Sbjct: 177 GFLPDIVTYNIMIGSLCNRRKLGLALTVLDQL-LLDN------CMPTVI------TYTIL 223
Query: 185 MDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
++ + + A K+ + + ++ +I G CK + A + + + G
Sbjct: 224 IEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGC 283
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD +SY + + + + + + + EM +GC+P+ +T +I++ +L + +I EA+
Sbjct: 284 EPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAIS 343
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVR---------FLI----------YNTMISSAC 344
V + M + DT Y LI L K R ++I YNT++++ C
Sbjct: 344 VLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALC 403
Query: 345 VRSEEGNALKLRQKIEEDSCKPDC---ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
AL++ K+ C P+ T +L C + R L ++ M+SKG
Sbjct: 404 KNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSR------ALGMVPAMISKG 457
Query: 402 IVPQESTHKMLAEELEKKSL 421
I P E T+ L L + L
Sbjct: 458 IDPDEITYNSLISCLCRDGL 477
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 22/221 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +LI C+ + D A +K M + +PD SY I C+E + M
Sbjct: 325 YSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMI 384
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------S 328
GC P ++ ++ AL K +AL+++ K++ C + S Y+++I L S
Sbjct: 385 SNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRS 444
Query: 329 KAVRF-------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+A+ + YN++IS C A+ L +E+ +P ++ L
Sbjct: 445 RALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVL 504
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C +R+ D + + EM+ KG P E+T+ +L E +
Sbjct: 505 LGLCKVRRIDDA---IGMFAEMIEKGCRPNETTYILLIEGI 542
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 93/219 (42%), Gaps = 25/219 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I G+CK + + A + + M GF PD V+Y I C + L ++
Sbjct: 150 YNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLL 209
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
C P+VIT TI++ A I EA+K+ E+M + L D
Sbjct: 210 LDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPD----------------MY 253
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN +I C A +L + C+PD ++ L+ ++ + +G L+
Sbjct: 254 TYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGE---KLV 310
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
EM S+G P + T+ +L L + RIDE ++
Sbjct: 311 AEMFSRGCEPNKVTYSILISSLCRFG------RIDEAIS 343
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 102/241 (42%), Gaps = 28/241 (11%)
Query: 129 TPETY--NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP+TY + ++ AL K + L ++ + +SNG + D + ++
Sbjct: 354 TPDTYSYDPLISALCKEGRLDLAIGIMDYM--ISNGCLP-----------DIVNYNTILA 400
Query: 187 TLVKRNSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
L K + A ++F K + C S ++ +I A + M G
Sbjct: 401 ALCKNGNANQALEIFNKLRGMGCPPNVSS-YNTMISALWSCGDRSRALGMVPAMISKGID 459
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD ++Y I CR+ + L +M++ G +P+VI+ IV+ L K ++I +A+ +
Sbjct: 460 PDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGM 519
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
+ +M C + + Y +L + + F + T E N+L R I +DS
Sbjct: 520 FAEMIEKGCRPNETTY----ILLIEGIGFAGWRTE------AMELANSLFSRDVISQDSF 569
Query: 365 K 365
K
Sbjct: 570 K 570
>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
Length = 658
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 115/263 (43%), Gaps = 25/263 (9%)
Query: 180 AMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
+ ++++ L K V A +VF + K C+ + L+ G CK + D A + E
Sbjct: 189 SFNLVIKALCKLGFVDRAIEVFRGMPEKKCLP-DGYTYCTLMDGLCKEERIDEAVLLLDE 247
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M G SP V Y I+ C++ D +V + M KGC P+ +T ++H L +
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGK 307
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-------------------IYNT 338
+ +A+ + E+M S C+ + Y +LI L K R + IY+
Sbjct: 308 LDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSV 367
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+IS + A+ L +K+ E C+P+ ++ + C + + + +LN M+
Sbjct: 368 LISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILN---GMI 424
Query: 399 SKGIVPQESTHKMLAEELEKKSL 421
S G +P T+ L + K L
Sbjct: 425 SSGCLPNVYTYSSLMKGFFKTGL 447
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 110/262 (41%), Gaps = 26/262 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L++ LVK+ ++ + ++ L+ I+ VLI G K K++ A K+M +
Sbjct: 331 GTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAE 390
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ V Y+ I+ CRE + L M GC P+V T + +M K E
Sbjct: 391 KGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEE 450
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAVRFLI------YNTMIS 341
A++V+ +M C + YS LI + SK + I Y++MI
Sbjct: 451 AIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIK 510
Query: 342 SACVRSEEGNALKLRQKI---EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
C ALKL ++ EE +PD T+ L C +K + + +LN ML
Sbjct: 511 GLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNC---ML 567
Query: 399 SKGIVPQESTHKMLAEELEKKS 420
+G P T L +KS
Sbjct: 568 DRGCDPDVITCNTFLNTLSEKS 589
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 81/189 (42%), Gaps = 16/189 (8%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS + F+++I CK D A + + M + PDG +Y ++ C+E+ +
Sbjct: 183 ISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAV 242
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
L EMQ +GC PS + +++ L K + K+ + M C +
Sbjct: 243 LLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNE---------- 292
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+ YNT+I C++ + A+ L +++ C P+ T+ + ++R DG
Sbjct: 293 ------VTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDG 346
Query: 388 MLVLNLMRE 396
+L M E
Sbjct: 347 ARLLISMEE 355
>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Cucumis sativus]
Length = 665
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/353 (21%), Positives = 144/353 (40%), Gaps = 57/353 (16%)
Query: 118 TWAKTQ-------TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMS 170
TW T+ +G + TYN ++ K+ + G +L+ + + + +
Sbjct: 161 TWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQLLDRMSVSPD----VVTYN 216
Query: 171 TVMRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC 207
T++R L D ++L++ K + V A K+ + +D
Sbjct: 217 TILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDK 276
Query: 208 ISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
+ ++VLI+G CK + D A + + M +G P+ +++ + C +
Sbjct: 277 GCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDA 336
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
+ L EM KGC PSV+T I+++ L + I A+ V EKM C ++ Y+ L+
Sbjct: 337 EKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHA 396
Query: 327 LSK------AVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
L K A+ +L YNT++++ C + A+++ ++ C P
Sbjct: 397 LCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPV 456
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
T+ + + D + L+ EM KG+ P T+ L L ++
Sbjct: 457 LITYNTVIDGLSKVGKTDD---AIKLLDEMKGKGLKPDIITYSTLVGGLSREG 506
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 22/195 (11%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LI G CKT K+ A + M+ + G PD ++Y I YC+ + + L+ +
Sbjct: 151 LIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGE---IGSALQLLDRMS 207
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337
P V+T ++ L + ++ EA++V ++ +C D + Y
Sbjct: 208 VSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDV----------------ITYT 251
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+I + C S G A+KL ++ + CKPD T+ + C + R+ + + LN M
Sbjct: 252 ILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLN---HM 308
Query: 398 LSKGIVPQESTHKML 412
S G P TH ++
Sbjct: 309 PSYGCQPNVITHNII 323
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 16/204 (7%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
Q G +YN ++ AL K KK M ++ +D + VS D +
Sbjct: 380 QHGCTPNSLSYNPLLHALCKDKK---MERAIEYLDIM----VSRGCYP------DIVTYN 426
Query: 183 VLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L+ L K V A ++ L K C S ++ +I G K K+D A K + EM
Sbjct: 427 TLLTALCKDGKVDVAVEILNQLGSKGC-SPVLITYNTVIDGLSKVGKTDDAIKLLDEMKG 485
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD ++Y+ + RE + +++E G KP+ IT +M L KA+Q
Sbjct: 486 KGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVR 545
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI 324
A+ M + C + Y LI
Sbjct: 546 AIDFLAYMVARGCKPTETSYMILI 569
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/200 (19%), Positives = 86/200 (43%), Gaps = 19/200 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L+ CK K D A + + ++ G SP ++Y I+ + L EM+
Sbjct: 425 YNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMK 484
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
KG KP +IT + ++ L + ++ EA+ + ++ + +
Sbjct: 485 GKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEE----------------MGVKPNAI 528
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN+++ C + A+ + CKP ++ ++ ++ K+ + +LN
Sbjct: 529 TYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLN-- 586
Query: 395 REMLSKGIVPQESTHKMLAE 414
E+ S+G+V + S +++ +
Sbjct: 587 -ELCSRGVVKKSSAEQVVVK 605
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 26/194 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ AL K K + E++ ++ S V+ +T ++D L K
Sbjct: 424 TYNTLLTALCKDGKVDVAVEILNQLGS--------KGCSPVLITYNT-----VIDGLSKV 470
Query: 192 NSVAHAYKVFLKFK------DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
A K+ + K D I+ S+ L+ G + K D A ++ + G P
Sbjct: 471 GKTDDAIKLLDEMKGKGLKPDIITYST-----LVGGLSREGKVDEAIAFFHDLEEMGVKP 525
Query: 246 DGVSYTCFIEHYCREKD-FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
+ ++Y + C+ + R +D+ L M +GCKP+ + I++ L EAL++
Sbjct: 526 NAITYNSIMLGLCKARQTVRAIDF-LAYMVARGCKPTETSYMILIEGLAYEGLAKEALEL 584
Query: 305 YEKMKSDDCLTDTS 318
++ S + +S
Sbjct: 585 LNELCSRGVVKKSS 598
>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 418
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 117/275 (42%), Gaps = 31/275 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ + AM + D SVL++ L K + +
Sbjct: 164 KWGLKPSVV-SFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKM 222
Query: 195 AHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A+++F + + + + F LI G CK K D A + K++ G SPD ++Y
Sbjct: 223 DEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTL 282
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I +C++ D ++ + EM KG KP IT T ++ K + A + +KM ++
Sbjct: 283 IYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENI 342
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
D ++Y +IS C +A K+ +++ KPD T+
Sbjct: 343 RLDD----------------VVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTI 386
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+ C + G L++EM G VP T
Sbjct: 387 VMNEFCKNGDVNTGS---KLLKEMQRDGHVPSVVT 418
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 134/323 (41%), Gaps = 46/323 (14%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRL----DTRAMSVLM 185
+T +++ L K K F L+W KEI L GY SL + +M R + R ++
Sbjct: 102 DTCRKVLDHLMKLKYFKLVWGFYKEI--LECGYPASLYFFNILMHRFCKEGEIRLAQLVF 159
Query: 186 D---------TLVKRNSVAHAYKVF------LKFKDCISLSSQ-----IFDVLIHGWCKT 225
D ++V N++ + Y + K+ + S + VLI+G CK
Sbjct: 160 DAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKE 219
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
K D A + EM + G P+GV++T I+ +C+ K++ +G P +IT
Sbjct: 220 SKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITY 279
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
+++ K + + + ++M D + Y T+I +C
Sbjct: 280 NTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDK----------------ITYTTLIDGSCK 323
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ A + R+K+ E++ + D + + C + R D ++REMLS G+ P
Sbjct: 324 EGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAE---KMLREMLSVGLKPD 380
Query: 406 ESTHKMLAEELEKKSLGNAKERI 428
T+ ++ E K N ++
Sbjct: 381 SGTYTIVMNEFCKNGDVNTGSKL 403
>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
Length = 897
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 107/240 (44%), Gaps = 22/240 (9%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
++++ +++L+H + A + ++EM G +PD +Y I +C+E + +K
Sbjct: 617 VAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKAL 676
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ M +G + +V+T T +++AL K Q+ E K++++ D Y++LI
Sbjct: 677 EIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSH 736
Query: 328 SKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
S + + YNT++ C+ A KL ++ E +PD
Sbjct: 737 STSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDL 796
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
T+ + K +KD + + N EM++KG P T+ L + L K G+ E +
Sbjct: 797 VTYNTLISGYSMKGDVKDALRIRN---EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENM 853
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 120/295 (40%), Gaps = 33/295 (11%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G T TYN +V AL + +ELV+E+ G LA D +
Sbjct: 614 ERGVAMTVATYNLLVHALFMDGRGTEAYELVEEM-----GGKGLAP--------DVFTYN 660
Query: 183 VLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+L++ K +V A ++F + + + + LI+ K + K E +
Sbjct: 661 ILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRR 720
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD V Y I + + + + EM++K P +T +M L ++ EA
Sbjct: 721 GIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEA 780
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
K+ ++M D + YNT+IS ++ + +AL++R ++
Sbjct: 781 RKLIDEMTERGIQPD----------------LVTYNTLISGYSMKGDVKDALRIRNEMMN 824
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
P T+ ++ C + D N+++EM+ GI P +ST+ L E L
Sbjct: 825 KGFNPTLLTYNALIQGLCKNGQGDDAE---NMVKEMVENGITPDDSTYISLIEGL 876
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/338 (21%), Positives = 125/338 (36%), Gaps = 77/338 (22%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T+N M+ L + K EL+++ M R + + ++ R
Sbjct: 485 TFNIMLRHLCSAGKPARALELLRQ-----------------MPRPNAVTYNTVIAGFCSR 527
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG-FSPDGV 248
V A + ++ + I+ + + +I GWCK + D A K EM G P+ V
Sbjct: 528 GRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAV 587
Query: 249 SYTCFIEHYCREKDF------------RKVDYT-----------------------LKEM 273
Y I YC + R V T ++EM
Sbjct: 588 MYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEM 647
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK---- 329
KG P V T I+++ K + +AL+++E M Y++LI+ LSK
Sbjct: 648 GGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQV 707
Query: 330 ---------AVR------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
AVR ++YN +I+S A ++ ++E+ PD T+
Sbjct: 708 QETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTL 767
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
++ C R+ + L+ EM +GI P T+ L
Sbjct: 768 MRGLCLLGRVDEAR---KLIDEMTERGIQPDLVTYNTL 802
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 14/204 (6%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
++ G T TY A++ AL K + V+E D+L + V R D
Sbjct: 683 SRRGVRATVVTYTALIYALSKKGQ-------VQETDKLFDEAVRRGI------RPDLVLY 729
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L+++ ++ A+++ + K I+ ++ L+ G C + D A+K + EM +
Sbjct: 730 NALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTE 789
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD V+Y I Y + D + EM KG P+++T ++ L K Q +
Sbjct: 790 RGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDD 849
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI 324
A + ++M + D S Y SLI
Sbjct: 850 AENMVKEMVENGITPDDSTYISLI 873
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 26/221 (11%)
Query: 195 AHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A A+ +F F+ + L + F++++ C K A + +++M + P+ V+Y
Sbjct: 465 APAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTV 520
Query: 254 IEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I +C + ++EM+E+ G P+ T V+ K ++ EA+KV+++M
Sbjct: 521 IAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEM---- 576
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
LT + +YN +I C + + AL R ++ E T+
Sbjct: 577 -LTKGEVKPEAV----------MYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATY- 624
Query: 373 RSLKMCCHKKRMKD-GMLVLNLMREMLSKGIVPQESTHKML 412
+ H M G L+ EM KG+ P T+ +L
Sbjct: 625 ---NLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNIL 662
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 24/158 (15%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMSTVMRRLDTRA 180
YNA++ + S +E++ E+++ L G L + + +D
Sbjct: 729 YNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMT 788
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSD 229
+ LV N++ Y + KD + + +++ ++ LI G CK + D
Sbjct: 789 ERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGD 848
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
A+ +KEM ++G +PD +Y IE E D R +D
Sbjct: 849 DAENMVKEMVENGITPDDSTYISLIEGLTTE-DERAID 885
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 115/260 (44%), Gaps = 24/260 (9%)
Query: 197 AYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255
A++VF + D ++ + F +LI G+C+ + + A K KEM G PD VS++C I
Sbjct: 184 AWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIG 243
Query: 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315
+ R L+EM+ G P + T+V+ +A + +AL+V ++M CL
Sbjct: 244 LFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLP 303
Query: 316 DTSFYSSLIFILSKAVRFL-------------------IYNTMISSACVRSEEGNALKLR 356
D Y++L+ L K R L + T+I C+ + AL+L
Sbjct: 304 DVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLF 363
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE- 415
+ +PD T+ + C + + +L +M S+ I P T+ +L +
Sbjct: 364 DTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN---DLWDDMHSREIFPNHVTYSILIDSH 420
Query: 416 LEKKSLGNAKERIDELLTHA 435
EK + +A +DE++
Sbjct: 421 CEKGQVEDAFGFLDEMINKG 440
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 107/272 (39%), Gaps = 59/272 (21%)
Query: 195 AHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE----------------- 237
A AY+ L F +++ ++++H +CK + D + E
Sbjct: 80 ADAYR--LVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMV 137
Query: 238 ------------------MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
M G P V+Y ++ CR + K KEM + G
Sbjct: 138 DARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVA 197
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRF 333
P V + TI++ + +I EALK+Y++M+ D +S LI + ++ A+ +
Sbjct: 198 PDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAY 257
Query: 334 L-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
L IY +I C +AL++R ++ C PD T+ L C
Sbjct: 258 LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK 317
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
++R+ D +LN MRE +G+ P T L
Sbjct: 318 ERRLLDAEGLLNEMRE---RGVPPDLCTFTTL 346
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 106/248 (42%), Gaps = 29/248 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F LIHG+C K D A + M PD V+Y I+ CR+ D K + +M
Sbjct: 343 FTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMH 402
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILS 328
+ P+ +T +I++ + + Q+ +A ++M + L + Y+S+I +S
Sbjct: 403 SREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVS 462
Query: 329 KAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
K +FL YNT+I + +A KL +E++ +PD T+ +
Sbjct: 463 KGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLI 522
Query: 376 K-MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI---DEL 431
H + G + +M +KGI P T+ + + GN+KE DE+
Sbjct: 523 NGFSVHGNVQEAGW----IFEKMCAKGIEPDRYTYMSMIN--GHVTAGNSKEAFQLHDEM 576
Query: 432 LTHATEQR 439
L E+R
Sbjct: 577 LQRGKEKR 584
>gi|297795031|ref|XP_002865400.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311235|gb|EFH41659.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 675
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/383 (22%), Positives = 159/383 (41%), Gaps = 87/383 (22%)
Query: 50 DTQSPDEDFVIPSLASWVESL------KLNEQSRISSHALSEDHETDVDKVSEILRKRYP 103
D S I S S E L KL +S I + S + +D VS++L +
Sbjct: 65 DNYSSRNQVSIDSFLSPAEKLRGVFLQKLKGKSAIQNCLSSLGIDLSIDIVSDVLNRGNL 124
Query: 104 SPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVK--------- 154
S EA+ F F WA + G ++Y ++ ALG+ K F M ++++
Sbjct: 125 SG----EAMVTF-FNWAIREPGVSKDVDSYCVILRALGRRKFFSFMMDVLRGMVCEGVNP 179
Query: 155 EIDELSNGYVSLAAMSTVMRRLD-------------TRAMSVLMDTLVKRNSVAHAYKVF 201
++ L+ S V R ++ T + + L+ L +R+ V+ A VF
Sbjct: 180 DLRCLTIAMDSFVRAHYVRRAIELFEESESYGVKCSTESFNALLRCLCERSHVSAANSVF 239
Query: 202 LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
K I S ++++I GW K + + +K +KEM + GF PD +SY+ IE
Sbjct: 240 NAKKGKIPFDSCSYNIMISGWSKLGEIEGMEKVLKEMVEGGFVPDCLSYSHLIE------ 293
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
L +A +I +++++++ MK + D + Y+
Sbjct: 294 -----------------------------GLGRAGRINDSVEIFDNMKHKGSVLDANVYN 324
Query: 322 SLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
++I A F +++ +++ ++ C+P+ ET+++ +
Sbjct: 325 AMICNFISARDF----------------DESMRYYRRMLDEECEPNLETYSKLVSGLIKG 368
Query: 382 KRMKDGMLVLNLMREMLSKGIVP 404
+++ D L + EMLS+GI+P
Sbjct: 369 RKVSDA---LEIFEEMLSRGILP 388
>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 532
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 133/318 (41%), Gaps = 38/318 (11%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI---DELSNGY 163
+V E K F A G + TYN ++ L K+ + +L+KE+ ++ S
Sbjct: 210 RVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDV 269
Query: 164 VSLAAMSTVMRRLD-TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGW 222
++ ++ + R+L A SVL + +++ I + F+VLI G+
Sbjct: 270 MTYTSIISGFRKLGKLEAASVLFEEMIRSG---------------IEPTVVTFNVLIDGF 314
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
K A+ ++M + PD V++T I+ YCR D R M+ + P++
Sbjct: 315 GKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNI 374
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISS 342
T +++++AL K +I+EA + ++K D IYN +I
Sbjct: 375 YTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKP----------------FIYNPVIDG 418
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C A + ++EE C+PD T + C K RM + L++ ++ML+ G
Sbjct: 419 FCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEA---LDIFKKMLAIGC 475
Query: 403 VPQESTHKMLAEELEKKS 420
P T L L K
Sbjct: 476 APDNITISSLVACLLKAG 493
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 113/265 (42%), Gaps = 24/265 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
+T ++L+ L + V +++F + L + ++ LI G CK + D A +
Sbjct: 197 NTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLL 256
Query: 236 KEM-FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
KE+ ++ SPD ++YT I + + +EM G +P+V+T +++ K
Sbjct: 257 KEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGK 316
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
+ A ++EKM S C+ D ++SL I C + LK
Sbjct: 317 IGNMVAAEAMHEKMASYSCIPDVVTFTSL----------------IDGYCRTGDIRLGLK 360
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ ++ + P+ T++ + C R+ + +L+R++ + P+ + + +
Sbjct: 361 VWDVMKARNVSPNIYTYSVIINALCKDNRIHEAR---DLLRQLKCSDVFPKPFIYNPVID 417
Query: 415 ELEKKSLGNAKERIDELLTHATEQR 439
K GN E + ++T E+R
Sbjct: 418 GFCKA--GNVDEA-NVIVTEMEEKR 439
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 111/266 (41%), Gaps = 24/266 (9%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
+D+R + L+ + + A K+ ++ + + +SS +++ L++ K K A
Sbjct: 126 IDSRVLGFLVTSFAQAGKFDLAKKLIIEVQGEEARISSFVYNYLLNELVKGGKVHEAIFL 185
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
KE P+ ++ I CR + K MQ GC P V+T ++ L K
Sbjct: 186 FKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCK 245
Query: 295 AKQIYEALKVYEKMKS-DDCLTDTSFYSSLI-------------FILSKAVR------FL 334
A ++ A + ++++S +DC D Y+S+I + + +R +
Sbjct: 246 ANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVV 305
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+N +I A + +K+ SC PD T + C ++ G+ V ++M
Sbjct: 306 TFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVM 365
Query: 395 REMLSKGIVPQESTHKMLAEELEKKS 420
+ ++ + P T+ ++ L K +
Sbjct: 366 K---ARNVSPNIYTYSVIINALCKDN 388
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ--IFDVLIHGWCKTRKSDYAQKAMKEMF 239
SV+++ L K N + A + + K C + + I++ +I G+CK D A + EM
Sbjct: 378 SVIINALCKDNRIHEARDLLRQLK-CSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEME 436
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ PD V++T I +C + + K+M GC P IT + ++ L KA +
Sbjct: 437 EKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLAIGCAPDNITISSLVACLLKAGKPS 496
Query: 300 EALKVYEKMKSDDCLTDTSF 319
EA + + D L+ +S
Sbjct: 497 EAFHIVQTASEDLNLSFSSL 516
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 45/229 (19%), Positives = 93/229 (40%), Gaps = 25/229 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++LI C+ D + + M G D + + + F + E+Q
Sbjct: 96 YELLIRSLCQMGLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIEVQ 155
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
+ + S +++ L K +++EA+ ++++ + +T ++ LI
Sbjct: 156 GEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVE 215
Query: 325 --FILSKAVR-------FLIYNTMISSACVRSEEGNALKLRQKIE-EDSCKPDCETHARS 374
F L A++ + YNT+IS C +E A L ++++ + C PD T+
Sbjct: 216 KGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSI 275
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGN 423
+ +++ + L EM+ GI P T +L + K +GN
Sbjct: 276 ISGFRKLGKLEAASV---LFEEMIRSGIEPTVVTFNVLIDGFGK--IGN 319
>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
turbinata]
Length = 413
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 129/317 (40%), Gaps = 50/317 (15%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRL----DTRAMSVLM 185
+T M+E L K + F L+W +EI L GY SL + +M R D R +
Sbjct: 90 DTCRKMLEHLMKLRYFKLVWGFYEEI--LECGYPASLYFFNILMHRFCKDGDIRVAQSVF 147
Query: 186 DTLVK---RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
D + K R SV ++ L++G+ + D + M +G
Sbjct: 148 DAITKWGLRPSVVS------------------YNTLMNGYIRLGDLDEGFRLKSAMLANG 189
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
PD +Y+ I C+E + EM KG P+ +T T ++ K ++ A+
Sbjct: 190 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAM 249
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSA 343
++Y++M S L D Y++LI+ L K Y T+I
Sbjct: 250 EIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGC 309
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C + A K R+++ +++ + D + + C + + D ++REMLS G+
Sbjct: 310 CKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAE---KMLREMLSVGLK 366
Query: 404 PQESTHKMLAEELEKKS 420
P T+ M+ E KK
Sbjct: 367 PDIGTYTMIINEFCKKG 383
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 114/280 (40%), Gaps = 33/280 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L + R + D SVL++ L K + +
Sbjct: 152 KWGLRPSVV-SYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKM 210
Query: 195 AHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
A ++F + K I + F LI G CK + D A + K M PD ++Y
Sbjct: 211 DDANELFDEMLVKGLIP-NGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNT 269
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I C+ D ++ + EM KG KP T T ++ K + A K ++M ++
Sbjct: 270 LIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQEN 329
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
D Y++L IS C + +A K+ +++ KPD T+
Sbjct: 330 IRLDDVAYTAL----------------ISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYT 373
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C K + G L++EM G P T+ +L
Sbjct: 374 MIINEFCKKGDVWKGS---KLLKEMQRNGHAPSVVTYNVL 410
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 14/161 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K+ +L+ E MS + D + L+D K
Sbjct: 266 TYNTLIYGLCKNGDLKQAHDLIDE-------------MSMKGLKPDKFTYTTLIDGCCKE 312
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A+K + ++ I L + LI G C+ +S A+K ++EM G PD +Y
Sbjct: 313 GDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTY 372
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
T I +C++ D K LKEMQ G PSV+T ++M+
Sbjct: 373 TMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 413
>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
succulentifolia]
Length = 429
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/392 (23%), Positives = 157/392 (40%), Gaps = 60/392 (15%)
Query: 51 TQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVE 110
TQ D + +++ES L + I + L+++H+ R + + KV+E
Sbjct: 65 TQRSDIYVFSGIITAYLESGFLRDA--IECYRLTKEHK---------FRVPFDTCRKVLE 113
Query: 111 ---ALKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM---------WEL-- 152
LK F W + GY + +N ++ + K + L W L
Sbjct: 114 HLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRP 173
Query: 153 -VKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVF 201
V + L NGY+ L ++ R + D SVL++ L K + + ++F
Sbjct: 174 SVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELF 233
Query: 202 LKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
+ D + + + F LI G CK + D A + K+M SPD V+Y I C++
Sbjct: 234 DEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKK 293
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
D ++ + EM KG KP IT T ++ K + A + +M ++ D Y
Sbjct: 294 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAY 353
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
++L IS C +A K+ +++ KP+ T+ + C
Sbjct: 354 TAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 397
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
K + G LM+EM G VP T+ +L
Sbjct: 398 KGDVWTGS---KLMKEMQRDGYVPSVVTYNVL 426
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 128/310 (41%), Gaps = 36/310 (11%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W +E L GY + ++LM + K
Sbjct: 106 DTCRKVLEHLMKLKYFKLVWGFYEE--SLECGYPA-----------SLYFFNILMHSFCK 152
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A VF K + S F+ L++G+ K + + K M G PD +
Sbjct: 153 EGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYT 212
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+ I C+E + EM + G P+ +T T ++ K ++ A+++Y++M
Sbjct: 213 YSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 272
Query: 310 SDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEG 350
S D Y++LI+ L K + Y T+I +C +
Sbjct: 273 SQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLE 332
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A + R ++ +++ + D + + C + R D ++REMLS G+ P+ T+
Sbjct: 333 TAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLKPEIGTYT 389
Query: 411 MLAEELEKKS 420
M+ E KK
Sbjct: 390 MIINEFCKKG 399
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 14/161 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K +L+ E MS + D + L+D K
Sbjct: 282 TYNTLIYGLCKKGDLKQAQDLIDE-------------MSMKGLKPDKITYTTLIDGSCKE 328
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A++ + K+ I L + LI G C+ +S A+K ++EM G P+ +Y
Sbjct: 329 GDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 388
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
T I +C++ D +KEMQ G PSV+T ++M+
Sbjct: 389 TMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLMNG 429
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 87/229 (37%), Gaps = 49/229 (21%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY+ ++ L K K EL E+ L G V + + L+D K
Sbjct: 212 TYSVLINGLCKESKMDDXNELFDEM--LDXGLVP-----------NGVTFTTLIDGHCKN 258
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A +++ + +S ++ LI+G CK AQ + EM G PD ++Y
Sbjct: 259 GRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 318
Query: 251 TCFIEHYCREKDFRK-----------------VDYT------------------LKEMQE 275
T I+ C+E D V YT L+EM
Sbjct: 319 TTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 378
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G KP + T T++++ K ++ K+ ++M+ D + Y+ L+
Sbjct: 379 VGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLM 427
>gi|302142966|emb|CBI20261.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 146/344 (42%), Gaps = 57/344 (16%)
Query: 117 FTWAK---TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM 173
F WA ++GY +N +++ LG+ ++F M +L E MS
Sbjct: 139 FNWASRCGIESGYSPGCGVHNEILDILGRMRRFHEMTQLFDE-------------MSKRK 185
Query: 174 RRLDTRAMSVLMDTLVKRNSVAH-----AYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS 228
++ R VL++ R + AH A K+F K K S +V+++GWC
Sbjct: 186 GLVNERTFGVLLN----RYAAAHKTEEAAVKIFYKRKGAWIRS---MNVILNGWCVLGSL 238
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
A++ ++ PD +Y FI + + M EKGC P V C +
Sbjct: 239 REAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCI 298
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----LIYNTMISSAC 344
+ AL K+I EAL+V +M DC D + Y+SLI L K RF + + M C
Sbjct: 299 IDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKGC 358
Query: 345 VRSEE--GNALK----------LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG--MLV 390
+ + G LK + +++E + C+ + + + LK+ M G + +
Sbjct: 359 LPNARTYGYLLKSTKKPEEVPGILERMERNGCRMNSDCYNLILKLY-----MDWGYELKL 413
Query: 391 LNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTH 434
+ + EM G+ P + T+ ++ L K R+D+ L++
Sbjct: 414 RSTLDEMERNGMGPDQRTYTIMIHGLYDKG------RMDDALSY 451
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 119/271 (43%), Gaps = 41/271 (15%)
Query: 153 VKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVFL 202
++ ++ + NG+ L ++ R + D + +++L K ++ A K+F
Sbjct: 222 IRSMNVILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQ 281
Query: 203 KF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
K C + I + +I C ++ A + ++EM + PD +Y I+H C+
Sbjct: 282 AMWEKGC-NPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKI 340
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
+ F KV L +M++KGC P+ T ++ + +K +++ L E+M+ + C ++ Y
Sbjct: 341 QRFEKVYELLDDMEQKGCLPNARTYGYLLKSTKKPEEVPGIL---ERMERNGCRMNSDCY 397
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE---DSCKPDCETHARSLKM 377
+ ++ + + G LKLR ++E + PD T+ +
Sbjct: 398 NLILKLY-------------------MDWGYELKLRSTLDEMERNGMGPDQRTYTIMIHG 438
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
K RM D L+ ++M G+VP+ T
Sbjct: 439 LYDKGRMDD---ALSYFKQMTLMGMVPEPRT 466
>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rubella]
Length = 394
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 133/318 (41%), Gaps = 52/318 (16%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRL----DTRAMSVLM 185
+T ++E L K K F L+W KEI L +GY SL + +M R D R +
Sbjct: 90 DTCRKVLEHLMKLKYFKLVWGFYKEI--LESGYPASLYFFNILMHRFCKERDIRVAQSVF 147
Query: 186 D---------TLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKT 225
D ++V N++ + Y + L S + + VLI+G CK
Sbjct: 148 DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKE 207
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL---KEMQEKGCKPSV 282
K D A + EM G P+GV++T I+ +C+ +VD L K+M + P +
Sbjct: 208 SKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNG---RVDLALEIYKQMLSQSLLPDL 264
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISS 342
IT +++ L K + +A + ++M D + Y +I
Sbjct: 265 ITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDK----------------ITYTALIDG 308
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C + A + R+++ +++ + D + + C + R D ++REMLS G+
Sbjct: 309 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGL 365
Query: 403 VPQESTHKMLAEELEKKS 420
P T+ M+ E KK
Sbjct: 366 KPDARTYTMIINEFCKKG 383
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 105/255 (41%), Gaps = 30/255 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L + R + D SVL++ L K + +
Sbjct: 152 KWGLRPSVV-SYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKM 210
Query: 195 AHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
A ++F + K + + F LI G CK + D A + K+M PD ++Y
Sbjct: 211 DDANELFDEMLVKGLVP-NGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNT 269
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I C++ D ++ + EM KG KP IT T ++ K + A + ++M ++
Sbjct: 270 LIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQEN 329
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
D Y++L IS C +A K+ +++ KPD T+
Sbjct: 330 IRLDDVAYTAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPDARTYT 373
Query: 373 RSLKMCCHKKRMKDG 387
+ C K + G
Sbjct: 374 MIINEFCKKGDVWKG 388
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 14/142 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K +L+ E MS + D + L+D K
Sbjct: 266 TYNTLIYGLCKKGDLKQAHDLIDE-------------MSMKGLKPDKITYTALIDGCCKE 312
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A++ + ++ I L + LI G C+ +S A+K ++EM G PD +Y
Sbjct: 313 GDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTY 372
Query: 251 TCFIEHYCREKDFRKVDYTLKE 272
T I +C++ D K LKE
Sbjct: 373 TMIINEFCKKGDVWKGSKLLKE 394
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G CK D A + K M Q D V+YT I C+E + L+EM
Sbjct: 302 YTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREML 361
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKV 304
G KP T T++++ K +++ K+
Sbjct: 362 SVGLKPDARTYTMIINEFCKKGDVWKGSKL 391
>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
fucata]
Length = 414
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 120/280 (42%), Gaps = 33/280 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L + R + D SVL++ L K + +
Sbjct: 153 KWGLRPSVV-SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKI 211
Query: 195 AHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
A ++F + K + +S F LI G CK + D A + K+M SPD ++Y
Sbjct: 212 DDANELFDEMLVKGLVP-NSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 270
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I C++ D ++ + + EM KG KP IT T ++ K + A + ++M ++
Sbjct: 271 LIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQEN 330
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
D ++Y +IS C +A K+ +++ KPD T+
Sbjct: 331 TRLDD----------------VVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYT 374
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C K + G L++EM G VP T+ +L
Sbjct: 375 MIINEFCKKGDVWKGS---KLLKEMQRDGHVPSVVTYNVL 411
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 108/261 (41%), Gaps = 51/261 (19%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
S F++L+H +CK AQ + + G P VSY + Y R D +
Sbjct: 124 SLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 183
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------ 324
M G +P V T +++++ L K +I +A +++++M + ++ +++LI
Sbjct: 184 SAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKN 243
Query: 325 -----------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+LS+++ + YNT+I C + + A L ++ KPD T+
Sbjct: 244 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITY 303
Query: 372 ARSLKMCC----------HKKRM--------------------KDGMLV--LNLMREMLS 399
+ CC H+KRM ++G V ++REMLS
Sbjct: 304 TTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREMLS 363
Query: 400 KGIVPQESTHKMLAEELEKKS 420
G+ P T+ M+ E KK
Sbjct: 364 VGLKPDARTYTMIINEFCKKG 384
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
L ++ LI G C+ S A+K ++EM G PD +YT I +C++ D K
Sbjct: 333 LDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKL 392
Query: 270 LKEMQEKGCKPSVITCTIVMHA 291
LKEMQ G PSV+T ++M+
Sbjct: 393 LKEMQRDGHVPSVVTYNVLMNG 414
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G CK D A + K M Q D V YT I CRE + L+EM
Sbjct: 303 YTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREML 362
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G KP T T++++ K +++ K+ ++M+ D + Y+ L+
Sbjct: 363 SVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 412
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/198 (19%), Positives = 78/198 (39%), Gaps = 22/198 (11%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+E+ + G+ + + +C++ D R + + G +PSV++ +M+ +
Sbjct: 114 EEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 173
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIY 336
+ E ++ M + D YS LI L K + + +
Sbjct: 174 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTF 233
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
T+I C A+++ +++ S PD T+ + C K +K +L+ E
Sbjct: 234 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH---HLIDE 290
Query: 397 MLSKGIVPQESTHKMLAE 414
M KG+ P + T+ L +
Sbjct: 291 MSMKGLKPDKITYTTLID 308
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 19/161 (11%)
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
+EH + K F+ V +E+ E G S+ I+MH K I A V+ D
Sbjct: 97 LEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVF------DA 150
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
+T S++ YNT+++ + +L+ + +PD T++
Sbjct: 151 ITKWGLRPSVV----------SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSV 200
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ C + ++ D L EML KG+VP T L +
Sbjct: 201 LINGLCKESKIDDAN---ELFDEMLVKGLVPNSVTFTTLID 238
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 115/260 (44%), Gaps = 24/260 (9%)
Query: 197 AYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255
A++VF + D ++ + F +LI G+C+ + + A K KEM G PD VS++C I
Sbjct: 245 AWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIG 304
Query: 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315
+ R L+EM+ G P + T+V+ +A + +AL+V ++M CL
Sbjct: 305 LFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLP 364
Query: 316 DTSFYSSLIFILSKAVRFL-------------------IYNTMISSACVRSEEGNALKLR 356
D Y++L+ L K R L + T+I C+ + AL+L
Sbjct: 365 DVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLF 424
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE- 415
+ +PD T+ + C + + +L +M S+ I P T+ +L +
Sbjct: 425 DTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN---DLWDDMHSREIFPNHVTYSILIDSH 481
Query: 416 LEKKSLGNAKERIDELLTHA 435
EK + +A +DE++
Sbjct: 482 CEKGQVEDAFGFLDEMINKG 501
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 107/272 (39%), Gaps = 59/272 (21%)
Query: 195 AHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE----------------- 237
A AY+ L F +++ ++++H +CK + D + E
Sbjct: 141 ADAYR--LVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMV 198
Query: 238 ------------------MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
M G P V+Y ++ CR + K KEM + G
Sbjct: 199 DARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVA 258
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRF 333
P V + TI++ + +I EALK+Y++M+ D +S LI + ++ A+ +
Sbjct: 259 PDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAY 318
Query: 334 L-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
L IY +I C +AL++R ++ C PD T+ L C
Sbjct: 319 LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK 378
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
++R+ D +LN MRE +G+ P T L
Sbjct: 379 ERRLLDAEGLLNEMRE---RGVPPDLCTFTTL 407
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 106/250 (42%), Gaps = 34/250 (13%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F LIHG+C K D A + M PD V+Y I+ CR+ D K + +M
Sbjct: 404 FTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMH 463
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILS 328
+ P+ +T +I++ + + Q+ +A ++M + L + Y+S+I +S
Sbjct: 464 SREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVS 523
Query: 329 KAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
K +FL YNT+I + +A KL +E++ +PD T+ +
Sbjct: 524 KGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLI 583
Query: 376 K-MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI---DEL 431
H + G + +M +KGI P T+ + + GN+KE DE+
Sbjct: 584 NGFSVHGNVQEAGW----IFEKMCAKGIEPDRYTYMSMIN--GHVTAGNSKEAFQLHDEM 637
Query: 432 LTHATEQRTF 441
L QR F
Sbjct: 638 L-----QRGF 642
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 47/105 (44%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LIHG+ K K A K + M + PD V+Y I + + ++ + ++M
Sbjct: 544 YNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMC 603
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF 319
KG +P T +++ A EA +++++M D F
Sbjct: 604 AKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDDKF 648
>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Brachypodium distachyon]
Length = 968
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 28/264 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D ++++D L K HAY + + + D ++ ++ LI G+ K A
Sbjct: 293 DVYTYNIMIDKLCKMKRSTHAYLLLKRMRGDNLAPDECTYNTLIKGFFDESKMMLAIHIF 352
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM + G P +YT I+ YCR + L EMQ G KPS +T + +++
Sbjct: 353 NEMLRQGLKPSLATYTTLIDGYCRNGTIDEALRVLYEMQVAGVKPSEVTYSAMLNG---- 408
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-------------------IY 336
++EA VY+ M+ C D Y +L+ L K +
Sbjct: 409 -SVHEAFSVYDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQAKEFMSCIVHIPSAIDQKTL 467
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N ++ C AL L +K+ + PD T+ L C K ++ +++L +
Sbjct: 468 NALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPAVILLQM--- 524
Query: 397 MLSKGIVPQESTHKMLAEELEKKS 420
ML KG+VP T+ L + L K+
Sbjct: 525 MLEKGLVPDIVTYTCLLKGLIKEG 548
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 105/268 (39%), Gaps = 34/268 (12%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-------FKDCISLSSQIFDVLIHGWCKTRKSD 229
D + L+ L+K V A +F + + DCI+ +S +++G+ K K
Sbjct: 533 DIVTYTCLLKGLIKEGQVKAASYLFQEIICKEGMYADCIAYNS-----MMNGYLKAGKLH 587
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
+ + +M Q+ P+ SY + + ++ + Y K+M KG KP+ +T +++
Sbjct: 588 KVEMTIYDMNQNKVYPNPASYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPTNVTYRLLI 647
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL--------------- 334
L K I A+K +KM + D + LI S+ R
Sbjct: 648 LGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKWLYMS 707
Query: 335 ----IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
Y+ MI+ ++ ++ + + + E +P H + + K R D
Sbjct: 708 PSSKTYSAMINGLIRKNWLQHSCDVLRDMVESGLEPK---HTHYIALINAKCRFGDINGA 764
Query: 391 LNLMREMLSKGIVPQESTHKMLAEELEK 418
L EM + GIVP E + L K
Sbjct: 765 FRLKEEMTALGIVPAEVADSSIVRGLSK 792
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 103/245 (42%), Gaps = 28/245 (11%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI-----SLSSQIFDVLIHGWCKTRKSDYA 231
D + VL++ +++ ++ A ++F +C+ S SS+ + +I+G + ++
Sbjct: 674 DRLSFDVLINAFSEKSRMSDALQLF----NCMKWLYMSPSSKTYSAMINGLIRKNWLQHS 729
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
+++M + G P Y I CR D +EM G P+ + + ++
Sbjct: 730 CDVLRDMVESGLEPKHTHYIALINAKCRFGDINGAFRLKEEMTALGIVPAEVADSSIVRG 789
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN 351
L K ++ E + V+ + + + +++L+ L C ++ +
Sbjct: 790 LSKCGKVEEGIIVFCSIIRAGMVPTIATFTTLMHGL----------------CKEAKISD 833
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
AL L+ +E K D T+ + C + + D L L EM SKG+ P +T+
Sbjct: 834 ALHLKSLMESCGLKIDVVTYNVLITGLCKIQCVSDA---LELYEEMKSKGLRPNVTTYTT 890
Query: 412 LAEEL 416
L E +
Sbjct: 891 LTEAI 895
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 33/229 (14%)
Query: 203 KFKDCI-----SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY 257
+F CI ++ + + L+ G C D A ++M F PD +YT + +
Sbjct: 450 EFMSCIVHIPSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGF 509
Query: 258 CREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDT 317
CR+ L+ M EKG P ++T T ++ L K Q+ A +++++ +
Sbjct: 510 CRKGKIVPAVILLQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEI-----ICKE 564
Query: 318 SFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI---EEDSCKPDCETHARS 374
Y+ I YN+M++ + G K+ I ++ P+ ++ +
Sbjct: 565 GMYADCI----------AYNSMMNGYL---KAGKLHKVEMTIYDMNQNKVYPNPASY--N 609
Query: 375 LKMCCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ M H +K G L + L ++M+ KGI P T+++L L K +
Sbjct: 610 ILMHGH---IKKGHLSRSIYLYKDMVRKGIKPTNVTYRLLILGLSKHGM 655
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 23/179 (12%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
++ G K K + + + G P ++T + C+E + M+ G
Sbjct: 786 IVRGLSKCGKVEEGIIVFCSIIRAGMVPTIATFTTLMHGLCKEAKISDALHLKSLMESCG 845
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337
K V+T +++ L K + + +AL++YE+MKS + + Y++ L++A IY
Sbjct: 846 LKIDVVTYNVLITGLCKIQCVSDALELYEEMKSKGLRPNVTTYTT----LTEA----IYG 897
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
T R+ EG KL IE+ P C + RM++ M LN++R
Sbjct: 898 TG------RTLEGE--KLLNDIEDRGLVPSYTDQ-------CPEWRMENAMDRLNMIRN 941
>gi|242035667|ref|XP_002465228.1| hypothetical protein SORBIDRAFT_01g034600 [Sorghum bicolor]
gi|241919082|gb|EER92226.1| hypothetical protein SORBIDRAFT_01g034600 [Sorghum bicolor]
Length = 557
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 103/250 (41%), Gaps = 23/250 (9%)
Query: 188 LVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
L +R A +VF + K + I+ +IHG C+ R AQ+ EM G P+
Sbjct: 258 LFRRRMGGEALRVFREIKQRGYQIDRIIYSTVIHGLCEMRLIGDAQQMWDEMVDRGIQPN 317
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
+Y + +YCR D K EM KG K + ++C I++ ++Y+AL+V+E
Sbjct: 318 EYAYCSLVSYYCRVGDLEKARKVYDEMLAKGFKQTTVSCNILIKGFCVHGRVYDALEVFE 377
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVR----------FL---------IYNTMISSACVRS 347
+M D Y +LI L K + FL ++ +I + C
Sbjct: 378 EMSVKGIKHDVITYDTLIRGLCKVGKLDSAIQMYEWFLSSGLEPTVSTFSPLIGAMCENG 437
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
+ A+ L + +P ++ R + C R +GM L ML I P++
Sbjct: 438 QVHAAVDLINLMRAKGLEPLVWSNDRIINGFCKINRSDEGMAWLA---GMLKDNIKPRKQ 494
Query: 408 THKMLAEELE 417
T L E L
Sbjct: 495 TFDYLVESLS 504
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 91/211 (43%), Gaps = 24/211 (11%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I+ +IHG + R A + +E+ Q G+ D + Y+ I C + EM
Sbjct: 250 IYQRVIHGLFRRRMGGEALRVFREIKQRGYQIDRIIYSTVIHGLCEMRLIGDAQQMWDEM 309
Query: 274 QEKGCKPS-VITCTIVMHALEKAKQIYEALKVYEKMKSDD---------------CLTDT 317
++G +P+ C++V + + + +A KVY++M + C+
Sbjct: 310 VDRGIQPNEYAYCSLVSYYC-RVGDLEKARKVYDEMLAKGFKQTTVSCNILIKGFCVHGR 368
Query: 318 SFYSSLIF--ILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
+ + +F + K ++ + Y+T+I C + +A+++ + +P T +
Sbjct: 369 VYDALEVFEEMSVKGIKHDVITYDTLIRGLCKVGKLDSAIQMYEWFLSSGLEPTVSTFSP 428
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ C ++ + ++NLMR +KG+ P
Sbjct: 429 LIGAMCENGQVHAAVDLINLMR---AKGLEP 456
>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Vitis vinifera]
Length = 582
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 139/320 (43%), Gaps = 42/320 (13%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G++ TYN M+ +L +K GL +++ ++ L N M TV+ ++L
Sbjct: 167 GFLPDIVTYNIMIGSLCNRRKLGLALKVLDQL-LLDN------CMPTVI------TYTIL 213
Query: 185 MDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
++ + + A K+ + + ++ +I G CK + A + + + G
Sbjct: 214 IEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGC 273
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD +SY + + + + + + + EM +GC+P+ +T +I++ +L + +I EA+
Sbjct: 274 KPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAIS 333
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVR---------FLI----------YNTMISSAC 344
V + M + DT Y LI L K R ++I YNT++++ C
Sbjct: 334 VLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALC 393
Query: 345 VRSEEGNALKLRQKIEEDSCKPDC---ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
AL++ K+ C P+ T +L C + R L ++ M+SKG
Sbjct: 394 KNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSR------ALGMVPAMISKG 447
Query: 402 IVPQESTHKMLAEELEKKSL 421
+ P E T+ L L + L
Sbjct: 448 VDPDEITYNSLISCLCRDGL 467
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 22/221 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +LI C+ + D A +K M + +PD SY I C+E + M
Sbjct: 315 YSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMI 374
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------S 328
GC P ++ ++ AL K +AL+++ K++ C + S Y+++I L S
Sbjct: 375 SNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRS 434
Query: 329 KAVRF-------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+A+ + YN++IS C A+ L +E+ +P ++ L
Sbjct: 435 RALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVL 494
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C +R+ D + + EM+ KG P E+T+ +L E +
Sbjct: 495 LGLCKVRRIDDA---IGMFAEMIEKGCRPNETTYILLIEGI 532
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 25/219 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I G+CK + + A + + M GF PD V+Y I C + L ++
Sbjct: 140 YNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLL 199
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
C P+VIT TI++ A I EA+K+ E+M + L D Y+
Sbjct: 200 LDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPD--MYT------------- 244
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN +I C A +L + CKPD ++ L+ ++ + +G L+
Sbjct: 245 -YNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGE---KLV 300
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
EM S+G P + T+ +L L + RIDE ++
Sbjct: 301 AEMFSRGCEPNKVTYSILISSLCRFG------RIDEAIS 333
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 102/241 (42%), Gaps = 28/241 (11%)
Query: 129 TPETY--NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP+TY + ++ AL K + L ++ + +SNG + D + ++
Sbjct: 344 TPDTYSYDPLISALCKEGRLDLAIGIMDYM--ISNGCLP-----------DIVNYNTILA 390
Query: 187 TLVKRNSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
L K + A ++F K + C S ++ +I A + M G
Sbjct: 391 ALCKNGNANQALEIFNKLRGMGCPPNVSS-YNTMISALWSCGDRSRALGMVPAMISKGVD 449
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD ++Y I CR+ + L +M++ G +P+VI+ IV+ L K ++I +A+ +
Sbjct: 450 PDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGM 509
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
+ +M C + + Y LI + + F + T E N+L R I +DS
Sbjct: 510 FAEMIEKGCRPNETTYILLI----EGIGFAGWRTE------AMELANSLFSRDVISQDSF 559
Query: 365 K 365
K
Sbjct: 560 K 560
>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
Length = 578
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 123/281 (43%), Gaps = 30/281 (10%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G + TYN++++ K G M+ + + E+ +S A++ VL
Sbjct: 221 GLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVT----------FGVL 270
Query: 185 MDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
++ K ++ A A +VF + K I+ S ++ LI G C K + K M+EM G
Sbjct: 271 INGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGL 330
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
SP+ +++ C ++ +C++ + + M E+ +P V+ I++ + ++ +A+
Sbjct: 331 SPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMA 390
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKA-------------------VRFLIYNTMISSAC 344
V E M + + Y+ LI S++ + YN +I + C
Sbjct: 391 VKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALC 450
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
+ E A+KL ++ E +P+ T+ ++ C K +K
Sbjct: 451 CKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIK 491
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 19/207 (9%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I+++LI + + K + A + M + G SP+ +Y C I + R D+R L EM
Sbjct: 371 IYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEM 430
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+EKG + V+T +++ AL ++ +A+K+ ++M +
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSE----------------VGLEPNH 474
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
L YNT+I C + +A ++R ++E+ + + T+ +K C +M + +LN
Sbjct: 475 LTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLN- 533
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKS 420
EML K +VP T++ + E + +K
Sbjct: 534 --EMLDKCLVPNGITYETIKEGMMEKG 558
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 78/214 (36%), Gaps = 54/214 (25%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK----- 265
S+ + L+ G ++ D A+KA + + SPD ++ I CR RK
Sbjct: 155 STSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVA 214
Query: 266 ---------------------------------VDYTLKEMQEKGCKPSVITCTIVMHAL 292
VD LKEM E G P+ +T ++++
Sbjct: 215 KDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGY 274
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA 352
K A++V+E+MK A + YN++IS C +
Sbjct: 275 CKNSNTAAAVRVFEEMKQQGI----------------AASVVTYNSLISGLCSEGKVEEG 318
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
+KL +++E+ P+ T LK C K M D
Sbjct: 319 VKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMAD 352
>gi|356571194|ref|XP_003553764.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g04760, chloroplastic-like [Glycine max]
Length = 531
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 133/316 (42%), Gaps = 40/316 (12%)
Query: 162 GYVS-----LAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQI 214
GYV ++++S+ LD ++L+ +L + +++ + K C +
Sbjct: 207 GYVDRAFEVISSISSKGYALDVITYNILLRSLXNQGKWEAGFELMSDMVAKGC-EANVVT 265
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ VLI C+ K + +K+M + G PDG Y I C+E L M
Sbjct: 266 YSVLISSLCRDGKVEEGVGLLKDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVMI 325
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA---V 331
GC P ++ ++ L K K+ EAL ++EK+ C + S Y+++ L + V
Sbjct: 326 SDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKV 385
Query: 332 RFL---------------IYNTMISSACVRSEEGNALKLRQKIEEDS--CKPDCETHARS 374
R L YN++IS C A++L +E +S CKP ++
Sbjct: 386 RALGMILEMLDXVDPDVIAYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIV 445
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-------EKKSLGNAKER 427
L C R+ D VL M+ KG +P E+T+ L E + + + L
Sbjct: 446 LLGLCRVGRVSDATEVL---AAMVDKGCLPNETTYTFLIEGIGFGGWLNDARDLATTLVN 502
Query: 428 IDELLTHATEQ--RTF 441
+D + H+ E+ +TF
Sbjct: 503 MDAISEHSFERLYKTF 518
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 102/240 (42%), Gaps = 30/240 (12%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV-LIHGWCKTRKSDYAQKAMKEMFQ 240
++L++ + + + A K+ + + I+L +F I C+ D A + + +
Sbjct: 163 TILIEATLLQGGIDEAIKLLDEMFE-INLQPDVFPYNSIIXMCREGYVDRAFEVISSISS 221
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G++ D ++Y + + + + +M KGC+ +V+T ++++ +L + ++ E
Sbjct: 222 KGYALDVITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEE 281
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMIS 341
+ + + MK D Y LI +L K R + YNT+++
Sbjct: 282 GVGLLKDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILA 341
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHA---RSLKMCCHKKRMKDGMLVLNLMREML 398
C + AL + +K+ E C P+ ++ +L HK R L ++ EML
Sbjct: 342 CLCKQKRADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKVR------ALGMILEML 395
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 90/214 (42%), Gaps = 21/214 (9%)
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
T +A + + M GFSPD V+Y I C ++ ++ P+V+T
Sbjct: 102 TESIPHAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVT 161
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF----------------ILS 328
TI++ A I EA+K+ ++M + D Y+S+I I S
Sbjct: 162 YTILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSIIXMCREGYVDRAFEVISSISS 221
Query: 329 K--AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
K A+ + YN ++ S + + +L + C+ + T++ + C ++++
Sbjct: 222 KGYALDVITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEE 281
Query: 387 GMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
G + L+++M KG+ P + L L K+
Sbjct: 282 G---VGLLKDMKKKGLEPDGYCYDPLIAVLCKEG 312
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/261 (20%), Positives = 104/261 (39%), Gaps = 30/261 (11%)
Query: 193 SVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
S+ HAY+V + K+ S +++LI C A + ++ + F+P V+YT
Sbjct: 104 SIPHAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVTYT 163
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
IE + + L EM E +P V ++ + + + A +V + S
Sbjct: 164 ILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSII-XMCREGYVDRAFEVISSISSK 222
Query: 312 DCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGNA 352
D Y+ L+ L ++ + Y+ +ISS C +
Sbjct: 223 GYALDVITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEEG 282
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ L + +++ +PD + + + C + R+ L + ++ M+S G VP + +
Sbjct: 283 VGLLKDMKKKGLEPDGYCYDPLIAVLCKEGRVD---LAIEVLDVMISDGCVPDIVNYNTI 339
Query: 413 AEELEKKSLGNAKERIDELLT 433
L K ++R DE L+
Sbjct: 340 LACLCK------QKRADEALS 354
>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Glycine max]
Length = 693
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 123/280 (43%), Gaps = 34/280 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
+ M+E L K +E+++E+ + G+ + + + L+D L K+
Sbjct: 274 NFTCMIEGLCKRGSVKQAFEMLEEM--VGRGW-----------KPNVYTHTALIDGLCKK 320
Query: 192 NSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
A+++FLK + + + +I G+C+ K + A+ + M + G +P+ +
Sbjct: 321 GWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNT 380
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
YT I+ +C+ +F + + M E+G P+V T ++ L K ++ EA KV +
Sbjct: 381 YTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGF 440
Query: 310 SDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
+ D + Y +IS C ++E AL L K+ + +PD
Sbjct: 441 RNGLDADK----------------VTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIH 484
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
++ + + C +KRMK+ + E + G+VP T+
Sbjct: 485 SYTTLIAVFCREKRMKESEM---FFEEAVRFGLVPTNKTY 521
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 18/223 (8%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G TY +++ K+ F +EL+ ++E G+ + +
Sbjct: 371 EQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNE--EGFSP-----------NVCTYN 417
Query: 183 VLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
++D L K+ V AYKV F++ + + +LI CK + A +M +
Sbjct: 418 AIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKS 477
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD SYT I +CREK ++ + +E G P+ T T ++ + + A
Sbjct: 478 GIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLA 537
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----LIYNTMI 340
LK + +M C +D+ Y +LI L K + +Y+ MI
Sbjct: 538 LKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMI 580
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/337 (19%), Positives = 131/337 (38%), Gaps = 41/337 (12%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVK-------EIDELSNGYVSLAAM 169
F WA + + H Y A +L +K F E+++ EI + + M
Sbjct: 99 FNWAIASSKFRHFTRLYIACAASLISNKNFEKAHEVMQCMVKSFAEIGRVKEAIEMVIEM 158
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF------KDCISLSSQIFDVLIHGWC 223
T+ ++ ++ + + V +A +F + +C+S + V++ G+C
Sbjct: 159 HNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVS-----YRVMVVGYC 213
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
K + + + M + GF D + + + +C + + + + E G +P++I
Sbjct: 214 KLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLI 273
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------SKAVRF---- 333
T ++ L K + +A ++ E+M + +++LI L KA R
Sbjct: 274 NFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKL 333
Query: 334 ----------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
L Y MIS C + A L +++E P+ T+ + C
Sbjct: 334 VRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGN 393
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ ++N+M E +G P T+ + + L KK
Sbjct: 394 FERAYELMNVMNE---EGFSPNVCTYNAIVDGLCKKG 427
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/213 (19%), Positives = 84/213 (39%), Gaps = 27/213 (12%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM-----RRL 176
+ G+ TYNA+V+ L K + ++++K NG + T++ ++
Sbjct: 405 NEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLK--SGFRNGLDADKVTYTILISEHCKQA 462
Query: 177 DTRAMSVLMDTLVKRN--SVAHAYKVFLK--------------FKDCISL----SSQIFD 216
+ + VL + +VK H+Y + F++ + +++ +
Sbjct: 463 EIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYT 522
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
+I G+C+ A K M HG + D ++Y I C++ + M EK
Sbjct: 523 SMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEK 582
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
G P +T + + K A+ V E+++
Sbjct: 583 GLTPCEVTRVTLAYEYCKIDDGCSAMVVLERLE 615
>gi|145337672|ref|NP_177865.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122244095|sp|Q1PFC5.1|PP130_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77405
gi|91806103|gb|ABE65780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332197853|gb|AEE35974.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 458
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/383 (21%), Positives = 158/383 (41%), Gaps = 47/383 (12%)
Query: 75 QSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFC--FTWAKTQTGYMHTPET 132
+S + LS++ + +V + Y P KV L+ F W +T G+ H T
Sbjct: 70 RSPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFFWIETHFGFDHNEIT 129
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
M L K F +W+ ++++ NG + T +++ LM L +
Sbjct: 130 CRDMACLLAKGNDFKGLWDFLRQVSRRENG----------KNVVTTASITCLMKCLGEEG 179
Query: 193 SVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF--SPDGVS 249
V A F + K+ ++ +I+ C+ A+ + +M GF PD +
Sbjct: 180 FVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTYT 239
Query: 250 YTCFIEHYCR-------EKDFRK----VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
YT I YCR K R+ + +EM +G P V+T ++ K +I
Sbjct: 240 YTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRI 299
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK 358
AL+++E MK+ C+ + + YN+ I V +E A+++ +
Sbjct: 300 GRALELFEDMKTKGCVPNQ----------------VTYNSFIRYYSVTNEIEGAIEMMRT 343
Query: 359 IEE-DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
+++ P T+ + +R + +L+ EM+ G+VP+E T+K++ + L
Sbjct: 344 MKKLGHGVPGSSTYTPLIHALVETRRAAEAR---DLVVEMVEAGLVPREYTYKLVCDALS 400
Query: 418 KKSLGNA-KERIDELLTHATEQR 439
+ L + E + + + +QR
Sbjct: 401 SEGLASTLDEELHKRMREGIQQR 423
>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
[Oryza sativa Japonica Group]
Length = 571
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 123/281 (43%), Gaps = 30/281 (10%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G + TYN++++ K G M+ + + E+ +S A++ VL
Sbjct: 221 GLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVT----------FGVL 270
Query: 185 MDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
++ K ++ A A +VF + K I+ S ++ LI G C K + K M+EM G
Sbjct: 271 INGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGL 330
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
SP+ +++ C ++ +C++ + + M E+ +P V+ I++ + ++ +A+
Sbjct: 331 SPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMA 390
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKA-------------------VRFLIYNTMISSAC 344
V E M + + Y+ LI S++ + YN +I + C
Sbjct: 391 VKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALC 450
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
+ E A+KL ++ E +P+ T+ ++ C K +K
Sbjct: 451 CKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIK 491
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 19/207 (9%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I+++LI + + K + A + M + G SP+ +Y C I + R D+R L EM
Sbjct: 371 IYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEM 430
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+EKG + V+T +++ AL ++ +A+K+ ++M +
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSE----------------VGLEPNH 474
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
L YNT+I C + +A ++R ++E+ + + T+ +K C +M + +LN
Sbjct: 475 LTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLN- 533
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKS 420
EML K +VP T++ + E + +K
Sbjct: 534 --EMLDKCLVPNGITYETIKEGMMEKG 558
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 78/214 (36%), Gaps = 54/214 (25%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK----- 265
S+ + L+ G ++ D A+KA + + SPD ++ I CR RK
Sbjct: 155 STSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVA 214
Query: 266 ---------------------------------VDYTLKEMQEKGCKPSVITCTIVMHAL 292
VD LKEM E G P+ +T ++++
Sbjct: 215 KDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGY 274
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA 352
K A++V+E+MK A + YN++IS C +
Sbjct: 275 CKNSNTAAAVRVFEEMKQQGI----------------AASVVTYNSLISGLCSEGKVEEG 318
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
+KL +++E+ P+ T LK C K M D
Sbjct: 319 VKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMAD 352
>gi|357113487|ref|XP_003558534.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g02420-like [Brachypodium distachyon]
Length = 520
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 138/324 (42%), Gaps = 52/324 (16%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-------D 177
G +P T + + LG++++F MW+LV L V+ V+ R+ +
Sbjct: 102 GVAPSPFTLDTAIYVLGRARRFTHMWDLVHSYHRLCPDAVTARTAMVVLGRVAKICSVRE 161
Query: 178 TRA--------------------MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV 217
T A + L+ TL + S++ A VF K ++ Q F++
Sbjct: 162 TVASFRRLLRLFRGREGTESADLFNALLRTLCQEKSMSDARNVFHAHKYEFQVNRQTFNI 221
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
L+ GW + S+ A+ EM + G PD V+Y I+ C+ +D K L EM+EK
Sbjct: 222 LLSGW---KTSEDAEAFFAEMRELGIDPDLVTYNSLIDCQCKNRDVEKAYKLLDEMREKE 278
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--FILSKAV--RF 333
P VIT T ++ L Q +A + ++M C D Y++ I F+++K + F
Sbjct: 279 ISPDVITYTSLIGGLGLIGQPDKARHLLKEMCELGCHPDVPAYNATIRNFVIAKRLGDAF 338
Query: 334 LIYNTMISSACVRS---------------EEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+ + M S + + + G+A L +++ + C P+ ++ +++C
Sbjct: 339 ALMDEMASKGLMPNATTYNLFFRFYYWAYDIGSAWLLYERMRSERCFPNTQSCMFIVRLC 398
Query: 379 CHKKRMKDGMLVLNLMREMLSKGI 402
R M L L +M+ G
Sbjct: 399 ---HRHGKVMQALELWSDMVGNGF 419
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 34/240 (14%)
Query: 202 LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
L ++ I +F++LI + K K D A +M QHG +P+ V Y I+ C+
Sbjct: 366 LMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSG 425
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHAL------EKAKQIYEALKVYEKMKSDDCLT 315
++M ++G P++I T ++H L +KA+++ + E + CL
Sbjct: 426 SVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEEL-----ILEMLDRGICL- 479
Query: 316 DTSFYSSLI-----------------FILSKAVR--FLIYNTMISSACVRSEEGNALKLR 356
+T F++S+I ++ V+ + YNT+I C+ + A KL
Sbjct: 480 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLL 539
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ KPD T+ + C RM D L L +EM+S G+ P T+ ++ + L
Sbjct: 540 ASMVSVGVKPDIVTYGTLINGYCRVSRMDD---ALALFKEMVSSGVSPNIITYNIILQGL 596
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 111/265 (41%), Gaps = 27/265 (10%)
Query: 164 VSLAAMSTVMR---RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF--DVL 218
+ AA+ V++ R+D + L+ L + A + L+ + +F + L
Sbjct: 110 LGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNL 169
Query: 219 IHGWCKTRKSDYAQKAMKEMFQ---HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+ G C +S A + + M G PD VSY + + +E D K T EM +
Sbjct: 170 LKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLD 229
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335
+G P V+T + ++ AL KA+ + +A++V M + + D +
Sbjct: 230 RGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDC----------------MT 273
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
YN+++ C + A+ +K+ D +P+ T++ + C R + + +
Sbjct: 274 YNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFD--- 330
Query: 396 EMLSKGIVPQESTHKMLAEELEKKS 420
M +G+ P +T++ L + K
Sbjct: 331 SMTKRGLEPDIATYRTLLQGYATKG 355
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 105/272 (38%), Gaps = 39/272 (14%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
L+T + ++D+ K V + K+F L + + ++ LI G C K D A K
Sbjct: 479 LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKL 538
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ M G PD V+Y I YCR KEM G P++IT I++ L
Sbjct: 539 LASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFH 598
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
++ A ++Y + + S YN ++ C + AL+
Sbjct: 599 TRRTAAAKELYVSITKSGTQLELS----------------TYNIILHGLCKNNLTDEALR 642
Query: 355 LRQKIEEDSCKPDCETHARSLKM-------CCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
+ Q + C D + R+ + C KD L + G+VP
Sbjct: 643 MFQNL----CLTDLQLETRTFNIMIGALLKCGRMDEAKD------LFAAHSANGLVPDVR 692
Query: 408 THKMLAEEL-EKKSLGNAKERIDELLTHATEQ 438
T+ ++AE L E+ SL E +D+L E
Sbjct: 693 TYSLMAENLIEQGSL----EELDDLFLSMEEN 720
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 106/249 (42%), Gaps = 23/249 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D + + +++ K AY + + D L + + +I CK + D A + +
Sbjct: 200 DVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVL 259
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M ++G PD ++Y + YC ++ TLK+M+ G +P+V+T + +M+ L K
Sbjct: 260 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKN 319
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAVRFLI------Y 336
+ EA K+++ M D + Y +L+ +L VR I +
Sbjct: 320 GRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVF 379
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N +I + + + A+ + K+ + P+ + + + C + D ML +
Sbjct: 380 NILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYF---EQ 436
Query: 397 MLSKGIVPQ 405
M+ +G+ P
Sbjct: 437 MIDEGLTPN 445
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 104/249 (41%), Gaps = 26/249 (10%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR-KV 266
++ + + +LI C+ + D A+ + + GF D +++T ++ C +K +
Sbjct: 88 VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD-------DCLTDTSF 319
D L+ M E GC P V + ++ L + EAL++ M D D ++ +
Sbjct: 148 DIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTV 207
Query: 320 -------------YSSLIFILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
YS+ +L + + + Y+++I++ C A+++ + ++
Sbjct: 208 LNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGV 267
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNA 424
PDC T+ L C + K+ + L MR S G+ P T+ L L K
Sbjct: 268 MPDCMTYNSILHGYCSSGQPKEAIGTLKKMR---SDGVEPNVVTYSSLMNYLCKNGRSTE 324
Query: 425 KERIDELLT 433
+I + +T
Sbjct: 325 ARKIFDSMT 333
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 18/150 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +++ L +++ EL YVS+ T +L+ ++++ L K
Sbjct: 588 TYNIILQGLFHTRRTAAAKEL----------YVSITKSGT---QLELSTYNIILHGLCKN 634
Query: 192 NSVAHAYKVFLKFKDCIS---LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
N A ++F C++ L ++ F+++I K + D A+ +G PD
Sbjct: 635 NLTDEALRMFQNL--CLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVR 692
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
+Y+ E+ + ++D M+E GC
Sbjct: 693 TYSLMAENLIEQGSLEELDDLFLSMEENGC 722
>gi|15219046|ref|NP_175671.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207557|sp|Q9SSR4.1|PPR77_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g52620
gi|5903044|gb|AAD55603.1|AC008016_13 Contains 3 PF|01535 DUF domains [Arabidopsis thaliana]
gi|332194709|gb|AEE32830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 130/321 (40%), Gaps = 48/321 (14%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G+M T ET+ M+ K F L+ E+ E R+ ++ +
Sbjct: 270 GFMPTLETFGTMINGFCKEGDFVASDRLLSEVKERG-------------LRVSVWFLNNI 316
Query: 185 MDTLVKRNSVAHAYKV-------FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
+D + H YKV ++ DC +++LI+ CK K + A + E
Sbjct: 317 IDAKYR-----HGYKVDPAESIGWIIANDC-KPDVATYNILINRLCKEGKKEVAVGFLDE 370
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
+ G P+ +SY I+ YC+ K++ L +M E+GCKP ++T I++H L +
Sbjct: 371 ASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGH 430
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-------------------IYNT 338
+ +A+ + K+ D + Y+ L+ L K RFL +Y T
Sbjct: 431 MDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYAT 490
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+I + A K+ E K D H +K C + + + +N M E
Sbjct: 491 LIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNE-- 548
Query: 399 SKGIVPQESTHKMLAEELEKK 419
+ +VP + T+ + + K+
Sbjct: 549 -EHLVPDKFTYSTIIDGYVKQ 568
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 23/231 (9%)
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
K CI + ++ +I G+CK + A KE+ GF P ++ I +C+E DF
Sbjct: 234 KGCIP-NIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFV 292
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
D L E++E+G + SV ++ A + + + + ++DC D + Y+ LI
Sbjct: 293 ASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNILI 352
Query: 325 FILSK------AVRF-------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
L K AV F L Y +I + C E A KL ++ E CK
Sbjct: 353 NRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCK 412
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
PD T+ + M D +N+ +++ +G+ P + + ML L
Sbjct: 413 PDIVTYGILIHGLVVSGHMDDA---VNMKVKLIDRGVSPDAAIYNMLMSGL 460
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 100/222 (45%), Gaps = 11/222 (4%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + L+D ++ A KVF L + + + + +I G+C++ D A M
Sbjct: 484 DAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACM 543
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M + PD +Y+ I+ Y +++D + M++ CKP+V+T T +++
Sbjct: 544 NRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQ 603
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-----IYNTMISSACVRSEEG 350
A + +++M+ D + + Y++LI L+K L + M+++ CV +E
Sbjct: 604 GDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKAVYYWELMMTNKCVPNEVT 663
Query: 351 NALKLRQKIEEDSCK----PDCETHARSLKMCCHKKRMK-DG 387
L+ +++ S K PD H +S RMK DG
Sbjct: 664 FNCLLQGFVKKTSGKVLAEPDGSNHGQSSLFSEFFHRMKSDG 705
>gi|297839881|ref|XP_002887822.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333663|gb|EFH64081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 407
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/355 (20%), Positives = 140/355 (39%), Gaps = 75/355 (21%)
Query: 108 VVEALKCFC---------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE 158
V EAL C+ F W + ++G+ HT ET+N M++ LGK +F W L+ +
Sbjct: 10 VCEALSCYINDWQKALEFFNWVEKESGFRHTTETFNRMIDILGKYFEFETCWALINRMIG 69
Query: 159 LSNGYVSLAAMSTVMRRL----------------------DTRAMSVLMDTLVK------ 190
+ V +R D + L+D L +
Sbjct: 70 NPESLPNHVTFRIVFKRYVTAHLVQEAIDAYDKLDDFNLRDDTSFYNLVDALCEHKHVVE 129
Query: 191 -------RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+N +AH + V +++I ++++ GW K ++ +M G
Sbjct: 130 AEELCFGKNVIAHGFSV---------SNTKIHNLILRGWSKLGWWGKCKEYWDKMDTEGV 180
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
D SY+ +++ C+ K KEM+ + K V+ V+ A+ ++ + ++
Sbjct: 181 PKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRIKLDVVAYNTVIRAIGASQGVEFGIR 240
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS 363
V+ +M+ C + + +NT+I C +A ++ ++ +
Sbjct: 241 VFREMRERGCEPNVA----------------THNTIIKLLCEDGRMRDAYRMLDEMPKKG 284
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
C+PD S+ C R++ +L+L M+ G+ P+ T+ ML + E+
Sbjct: 285 CQPD------SISYMCLFSRLEKPSEILSLFGRMIRSGVRPKMDTYVMLMRKFER 333
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 109/244 (44%), Gaps = 33/244 (13%)
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMK 236
+V +++ + + K KD I L +++ F++L++ +CK K +
Sbjct: 260 VVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFD 319
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M + G P+ V+Y ++ YC K+ K M + G P + + +I+++ K K
Sbjct: 320 MMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIK 379
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYN 337
+ EA+ ++++M + + D YSSLI LSK+ R YN
Sbjct: 380 KFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYN 439
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+++ + C + A+ L K ++ +PD T++ +K C +++D V ++
Sbjct: 440 SILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVF---EDL 496
Query: 398 LSKG 401
L KG
Sbjct: 497 LVKG 500
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 28/212 (13%)
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK- 271
Q + ++I+G+CK +K D A KEM + PD V+Y+ I+ + ++ Y L+
Sbjct: 366 QSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSG---RISYALQL 422
Query: 272 --EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
+M ++G P++ T ++ AL K Q+ +A+ + K K D S YS LI L +
Sbjct: 423 VDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQ 482
Query: 330 AVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ + Y MI CV AL L K+E++ C PD +T
Sbjct: 483 SGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKT 542
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
+ + + KK D + L+REM+++G+
Sbjct: 543 Y-EIIILSLFKKDEND--MAEKLLREMIARGL 571
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 104/237 (43%), Gaps = 23/237 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LIHG CK ++ A ++ + + P+ V Y I+ C+ K + EM
Sbjct: 193 YGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMV 252
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
KG P V+T + ++ ++ +A+ ++ KM ++ D ++ L+
Sbjct: 253 SKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMK 312
Query: 325 -------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++ + ++ F+ YN+++ C+ E A + + + PD ++++ +
Sbjct: 313 EGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMI 372
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDEL 431
C K+ + M NL +EM K I+P T+ L + L K + A + +D++
Sbjct: 373 NGFCKIKKFDEAM---NLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQM 426
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 97/234 (41%), Gaps = 20/234 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++L++ + + A+ VF K + I F L G C + A ++
Sbjct: 124 NILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVA 183
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
GF D +SY I C+ + R L+ + +P+V+ ++ ++ K K + E
Sbjct: 184 LGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNE 243
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A ++ +M S D YS+L IS C+ + +A+ L K+
Sbjct: 244 AFDLFSEMVSKGISPDVVTYSAL----------------ISGFCILGKLKDAIDLFNKMI 287
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
++ KPD T + C +MK+G V ++ M+ +GI P T+ L +
Sbjct: 288 LENIKPDVYTFNILVNAFCKDGKMKEGKTVFDM---MMKQGIKPNFVTYNSLMD 338
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 27/212 (12%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE----------------IDELS-NGYV 164
Q G ++Y+ M+ K KKF L KE ID LS +G +
Sbjct: 357 AQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRI 416
Query: 165 SLAAMSTVMRRLDTRAM-------SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFD 216
S A ++ ++ R + + ++D L K + V A + KFKD +
Sbjct: 417 SYAL--QLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYS 474
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
+LI G C++ K + A+K +++ G++ D +YT I+ +C E F + L +M++
Sbjct: 475 ILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDN 534
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
GC P T I++ +L K + A K+ +M
Sbjct: 535 GCIPDAKTYEIIILSLFKKDENDMAEKLLREM 566
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 92/220 (41%), Gaps = 24/220 (10%)
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A + + +P + + + K + V Y ++M+ +G KP+++ C I+
Sbjct: 67 DDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNIL 126
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL--------------IF---ILSKAV 331
++ + I A V+ K+ + DT +++L +F +++
Sbjct: 127 INCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGF 186
Query: 332 RF--LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
F + Y T+I C E AL L Q+++ + +P+ + + C K + +
Sbjct: 187 HFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEA-- 244
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
+L EM+SKGI P T+ L LG K+ ID
Sbjct: 245 -FDLFSEMVSKGISPDVVTYSALISGF--CILGKLKDAID 281
>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 554
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 105/221 (47%), Gaps = 22/221 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G C ++ A + EM + PD V+YT +E C+ +++ L EM+
Sbjct: 161 YNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMR 220
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
+KGC P ++T +V++ + + ++ +A++ + + S C +T Y+ ++ L A R+
Sbjct: 221 DKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWE 280
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ +N +IS C + AL++ ++I + C P+ ++ L
Sbjct: 281 DAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLL 340
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C +K+M M L+L M+S+G P ++ L L
Sbjct: 341 HAFCKQKKMDKAMAFLDL---MVSRGCYPDIVSYNTLLTAL 378
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 119/262 (45%), Gaps = 21/262 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++L+ L ++ V A +V + K + +S ++ L+H +CK +K D A + M
Sbjct: 302 NMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVS 361
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD VSY + CR + L ++++KGC P +I+ V+ L KA + E
Sbjct: 362 RGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKE 421
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
AL++ +M S D + Y+T+ + C +A++ K++
Sbjct: 422 ALELLNEMVSKGLQPD----------------IITYSTIAAGLCREDRIEDAIRAFGKVQ 465
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ +P+ + + C ++ ++L M+ G +P EST+ +L E L +
Sbjct: 466 DMGIRPNTVLYNAIILGLCKRRETHS---AIDLFAYMIGNGCMPNESTYTILIEGLAYEG 522
Query: 421 L-GNAKERIDELLTHATEQRTF 441
L A++ +DEL + +++
Sbjct: 523 LIKEARDLLDELCSRGVVRKSL 544
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 99/248 (39%), Gaps = 26/248 (10%)
Query: 174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQK 233
RR D + L+ L A A +V + ++ ++ G+C + D A++
Sbjct: 92 RRPDAGTCAALIKKLSASGRTAEARRVLAACGPDV----MAYNAMVAGYCGAGQLDAARR 147
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
+ EM PD +Y I C L EM + C P V+T TI++ A
Sbjct: 148 LVAEM---PVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATC 204
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
K +A+K+ ++M+ C D + YN +++ C +A+
Sbjct: 205 KRSGYKQAMKLLDEMRDKGCTPD----------------IVTYNVVVNGICQEGRVDDAI 248
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
+ + + C+P+ ++ LK C +R +D LM EM KG P T ML
Sbjct: 249 EFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAE---ELMGEMGQKGCPPNVVTFNMLI 305
Query: 414 EELEKKSL 421
L +K L
Sbjct: 306 SFLCRKGL 313
>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 616
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 144/311 (46%), Gaps = 30/311 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI-DELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+YNA+++ L +K+ W+ V+E+ E+ + +L+ M D R + ++D + K
Sbjct: 215 SYNAVLKGLCMAKR----WDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICK 270
Query: 191 RNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
A + + L + ++ ++ G C + + A+ + EMFQ D V
Sbjct: 271 DGHHEVANDILSRMPS-YGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDV 329
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
++ ++ +C+ +V L++M E GC P VIT T V++ K + EA+ + + M
Sbjct: 330 TFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNM 389
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEE 349
+ C +T Y+ ++ L +A R+ + +NT+I+ C +
Sbjct: 390 SACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLA 449
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
A++L +++ + C PD +++ + + ++ + +LN+ M++KGI P +
Sbjct: 450 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNV---MINKGITPNTIIY 506
Query: 410 KMLAEELEKKS 420
+A L ++
Sbjct: 507 SSMASALSREG 517
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 109/272 (40%), Gaps = 57/272 (20%)
Query: 204 FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263
F++ L F++L+ +C+ D + +++M +HG PD ++YT I +C+E
Sbjct: 320 FQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLV 379
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+ LK M GCKP+ I+ TIV+ L +A++ +A ++ M CL + +++L
Sbjct: 380 DEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTL 439
Query: 324 IFILSK------AVRFL---------------------------------IYNTMI---- 340
I + K A+ L + N MI
Sbjct: 440 INFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGI 499
Query: 341 --------SSACVRSEEGNALKLRQ---KIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
S A S EG K+ Q I++ + + D + + C +
Sbjct: 500 TPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRA-- 557
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
++ M+S G +P EST+ +L L + L
Sbjct: 558 -IDFFAYMVSNGCMPNESTYTILIRGLASEGL 588
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 90/215 (41%), Gaps = 20/215 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D + +++ K V A + C + I + +++ G C+ + AQ+ +
Sbjct: 362 DVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELI 421
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M Q G P+ V++ I C++ + LK+M GC P +I+ + V+ L KA
Sbjct: 422 SHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKA 481
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIY 336
+ EAL++ M + +T YSS+ LS+ R +Y
Sbjct: 482 GKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALY 541
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
N +ISS C R E A+ + + C P+ T+
Sbjct: 542 NAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTY 576
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/355 (19%), Positives = 128/355 (36%), Gaps = 79/355 (22%)
Query: 147 GLMWELVKEIDELS-NGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205
GL+ + + +DE+ G + M V+ R + V+ V HA L
Sbjct: 122 GLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGG--FRSAVRALQVLHAKGCTLDSG 179
Query: 206 DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK---- 261
+C ++++ C+ D + ++++ G PD VSY ++ C K
Sbjct: 180 NC--------NLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDD 231
Query: 262 ------DFRKVDYTLKEMQEKGC-----------------------------------KP 280
+ +V L +M E GC KP
Sbjct: 232 VEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKP 291
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILSKAVRFL 334
+V+ V+ L A++ EA + +M +DC D ++ L+ ++ + + L
Sbjct: 292 NVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELL 351
Query: 335 -------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
Y T+I+ C A+ L + + CKP+ ++ LK C
Sbjct: 352 EQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRA 411
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLG-NAKERIDELLTHA 435
+R D L+ M+ +G +P T L + KK L A E + ++L +
Sbjct: 412 ERWVDAQ---ELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNG 463
>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
Length = 692
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/332 (20%), Positives = 149/332 (44%), Gaps = 47/332 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELS--------NGYVSLAAMSTVMRRL------- 176
+YNA+++ L +K++G + EL++E+ ++ N +S + + R+
Sbjct: 266 SYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQM 325
Query: 177 -------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRK 227
D R + ++D + K + A+++ + L + ++ L+ G C +
Sbjct: 326 VEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPS-YGLKPNVVCYNTLLKGLCSAER 384
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
+ ++ + EMF D V++ ++ +C+ +V L++M E GC P VIT T
Sbjct: 385 WEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTT 444
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------- 333
V++ K I EA+ + + M + C +T Y+ ++ L A R+
Sbjct: 445 VINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQG 504
Query: 334 -----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
+ +NT+I+ C + A++L +++ + C PD +++ + + + +
Sbjct: 505 CPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEAL 564
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+LN+ M++KG+ P + +A L ++
Sbjct: 565 ELLNV---MVNKGMSPNTIIYSSIASALSREG 593
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 90/206 (43%), Gaps = 22/206 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +++ G C + A+ M +M Q G + +++ I C++ + LK+M
Sbjct: 477 YTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQML 536
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
GC P +I+ + V+ L KA + EAL++ M + +T YSS+ LS+ R
Sbjct: 537 VNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRIN 596
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++YN +ISS C R E A++ + C P+ T+ +
Sbjct: 597 KVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILI 656
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKG 401
+ + +K+ ++ E+ SKG
Sbjct: 657 RGLASEGFVKEAQ---EMLTELCSKG 679
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 86/218 (39%), Gaps = 22/218 (10%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
++ C + A + EM + G +P Y +E CR FR L+++ +G
Sbjct: 165 VVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG 224
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----- 332
C V C +V++A+ + EAL + + S C D Y++++ L A R
Sbjct: 225 CALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQ 284
Query: 333 --------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+ +NT+IS C ++ ++ E C PD +A +
Sbjct: 285 ELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGI 344
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C + ++ +LN M S G+ P + L + L
Sbjct: 345 CKEGHLEVAHEILN---RMPSYGLKPNVVCYNTLLKGL 379
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/330 (18%), Positives = 123/330 (37%), Gaps = 46/330 (13%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
YNAMV ++ + L + N Y + + R ++D + +R
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRG 189
Query: 193 --SVAHAYKVFLK-------FKDCI-----------SLSSQIFDVLIHGWCKTRKSDYAQ 232
+ Y V L+ F+ + +L +++++ C D A
Sbjct: 190 CAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEAL 249
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
++++ G PD VSY ++ C K + V ++EM C P+++T ++ L
Sbjct: 250 HLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYL 309
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAVRF------ 333
+ +V +M C D Y+++I IL++ +
Sbjct: 310 CRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNV 369
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML--VL 391
+ YNT++ C +L ++ + C D T + C ++G++ V+
Sbjct: 370 VCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFC-----QNGLVDRVI 424
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEKKSL 421
L+ +ML G +P T+ + K+ L
Sbjct: 425 ELLEQMLEHGCMPDVITYTTVINGFCKEGL 454
>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Brachypodium distachyon]
Length = 627
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ L+ G+CK + + K +EM G PD V YT I+ CRE +K + +M
Sbjct: 185 VYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKM 244
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
E+G +P+V+T ++++++ K + EA+ + M D Y++LI LS +
Sbjct: 245 MERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEM 304
Query: 334 ---------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
+ +N++I C A ++R + E+ C + T
Sbjct: 305 DEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFN 364
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ ++K M LM EM S G+ P T+ +L
Sbjct: 365 LLIGGLLRVHKVKKAM---ELMDEMASSGLEPDSFTYSIL 401
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 106/249 (42%), Gaps = 25/249 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G C D A + ++EM + G P+ V Y+C ++ YC+ + V +EM
Sbjct: 151 YGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMS 210
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
+G +P V+ T ++ +L + ++ +A +V +KM + Y+ LI + K
Sbjct: 211 GRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVK 270
Query: 330 --------------AVRFLIYNTMISSACVRSEEGNALKLRQKI--EEDSCKPDCETHAR 373
A+ + YNT+I+ E A+ L +++ E +P+ T
Sbjct: 271 EAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNS 330
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDELL 432
+ C RM+ V ++M E G T +L L + + A E +DE+
Sbjct: 331 VIHGLCKTGRMRQAFQVRDMMAE---NGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMA 387
Query: 433 THATEQRTF 441
+ E +F
Sbjct: 388 SSGLEPDSF 396
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 82/202 (40%), Gaps = 19/202 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ L+ C R++ A +++M G PD V+Y I C D K L+EM
Sbjct: 116 YTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMC 175
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
E G +P+V+ + ++ KA + KV+E+M D Y+ L
Sbjct: 176 ESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGL----------- 224
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
I S C + A ++ K+ E +P+ T+ + C + +K+ M +L
Sbjct: 225 -----IDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAM---SLR 276
Query: 395 REMLSKGIVPQESTHKMLAEEL 416
ML KG+ T+ L L
Sbjct: 277 NNMLEKGVALDAVTYNTLITGL 298
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 20/190 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F++LI G + K A + M EM G PD +Y+ I +C+ + + L +M+
Sbjct: 363 FNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMR 422
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
G +P ++ ++ AL + + +A +++M +C D YS
Sbjct: 423 RDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHK-NCKLDVVAYS------------- 468
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
TMI AC + +A + + + ++ PD T++ + M + + VL
Sbjct: 469 ---TMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVL--- 522
Query: 395 REMLSKGIVP 404
++M + G VP
Sbjct: 523 KQMTASGFVP 532
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 57/140 (40%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ L ++ + A F + L + +IHG C+ R A++ +K M G
Sbjct: 436 LLAALCEQGMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGL 495
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD V+Y+ I + D + LK+M G P V ++ + L+
Sbjct: 496 IPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLE 555
Query: 304 VYEKMKSDDCLTDTSFYSSL 323
+ +M + D D+ S++
Sbjct: 556 LIREMTAKDIALDSKIISTI 575
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 90/221 (40%), Gaps = 24/221 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ +IHG CKT + A + M ++G + + V++ I R +K + EM
Sbjct: 328 FNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMA 387
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
G +P T +I+++ K Q+ A + KM+ D + Y L+ L
Sbjct: 388 SSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAAL------- 440
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEE--DSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
E+G + R +E +CK D ++ + C R++D
Sbjct: 441 ------------CEQGMMEQARNFFDEMHKNCKLDVVAYSTMIHGAC---RLRDRKSAEE 485
Query: 393 LMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
++ ML +G++P T+ ML A ER+ + +T
Sbjct: 486 FLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMT 526
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 34/240 (14%)
Query: 202 LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
L ++ I +F++LI + K K D A +M QHG +P+ V Y I+ C+
Sbjct: 366 LMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSG 425
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHAL------EKAKQIYEALKVYEKMKSDDCLT 315
++M ++G P++I T ++H L +KA+++ + E + CL
Sbjct: 426 SVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEEL-----ILEMLDRGICL- 479
Query: 316 DTSFYSSLI-----------------FILSKAVR--FLIYNTMISSACVRSEEGNALKLR 356
+T F++S+I ++ V+ + YNT+I C+ + A KL
Sbjct: 480 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLL 539
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ KPD T+ + C RM D L L +EM+S G+ P T+ ++ + L
Sbjct: 540 ASMVSVGVKPDIVTYGTLINGYCRVSRMDD---ALALFKEMVSSGVSPNIITYNIILQGL 596
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 105/272 (38%), Gaps = 39/272 (14%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
L+T + ++D+ K V + K+F L + + ++ LI G C K D A K
Sbjct: 479 LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKL 538
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ M G PD V+Y I YCR KEM G P++IT I++ L
Sbjct: 539 LASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFH 598
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
++ A ++Y + + S YN ++ C + AL+
Sbjct: 599 TRRTAAAKELYVSITKSGTQLELS----------------TYNIILHGLCKNNLTDEALR 642
Query: 355 LRQKIEEDSCKPDCETHARSLKM-------CCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
+ Q + C D + R+ + C KD L + G+VP
Sbjct: 643 MFQNL----CLTDLQLETRTFNIMIGALLKCGRMDEAKD------LFAAHSANGLVPDVR 692
Query: 408 THKMLAEEL-EKKSLGNAKERIDELLTHATEQ 438
T+ ++AE L E+ SL E +D+L E
Sbjct: 693 TYSLMAENLIEQGSL----EELDDLFLSMEEN 720
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 111/265 (41%), Gaps = 27/265 (10%)
Query: 164 VSLAAMSTVMR---RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF--DVL 218
+ AA+ V++ R+D + L+ L + A + L+ + +F + L
Sbjct: 110 LGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNL 169
Query: 219 IHGWCKTRKSDYAQKAMKEMFQ---HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+ G C +S A + + M G PD VSY + + +E D K T EM +
Sbjct: 170 LKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLD 229
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335
+G P V+T + ++ AL KA+ + +A++V M + + D +
Sbjct: 230 RGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDC----------------MT 273
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
YN+++ C + A+ +K+ D +P+ T++ + C R + + +
Sbjct: 274 YNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFD--- 330
Query: 396 EMLSKGIVPQESTHKMLAEELEKKS 420
M +G+ P +T++ L + K
Sbjct: 331 SMTKRGLEPDIATYRTLLQGYATKG 355
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 106/249 (42%), Gaps = 23/249 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D + + +++ K AY + + D L + + +I CK + D A + +
Sbjct: 200 DVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVL 259
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M ++G PD ++Y + YC ++ TLK+M+ G +P+V+T + +M+ L K
Sbjct: 260 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKN 319
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAVRFLI------Y 336
+ EA K+++ M D + Y +L+ +L VR I +
Sbjct: 320 GRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVF 379
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N +I + + + A+ + K+ + P+ + + + C + D ML +
Sbjct: 380 NILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYF---EQ 436
Query: 397 MLSKGIVPQ 405
M+ +G+ P
Sbjct: 437 MIDEGLTPN 445
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 101/242 (41%), Gaps = 26/242 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR-KVDYTLKEM 273
+ +LI C+ + D A+ + + GF D +++T ++ C +K +D L+ M
Sbjct: 95 YAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRM 154
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD------------DCLTDTSF-- 319
E GC P V + ++ L + EAL++ M D + + + F
Sbjct: 155 TELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKE 214
Query: 320 ------YSSLIFILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
YS+ +L + + + Y+++I++ C A+++ + ++ PDC T+
Sbjct: 215 GDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTY 274
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431
L C + K+ + L MR S G+ P T+ L L K +I +
Sbjct: 275 NSILHGYCSSGQPKEAIGTLKKMR---SDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDS 331
Query: 432 LT 433
+T
Sbjct: 332 MT 333
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 18/150 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +++ L +++ EL YVS+ T +L+ ++++ L K
Sbjct: 588 TYNIILQGLFHTRRTAAAKEL----------YVSITKSGT---QLELSTYNIILHGLCKN 634
Query: 192 NSVAHAYKVFLKFKDCIS---LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
N A ++F C++ L ++ F+++I K + D A+ +G PD
Sbjct: 635 NLTDEALRMFQNL--CLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVR 692
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
+Y+ E+ + ++D M+E GC
Sbjct: 693 TYSLMAENLIEQGSLEELDDLFLSMEENGC 722
>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
Length = 582
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 96/225 (42%), Gaps = 22/225 (9%)
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
++++ G C+ A ++EM + SPD VSY I C+ K ++ L EM+
Sbjct: 2 NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF---------- 325
GC P+ +TCT +M L K ++ EA+++ E MK D Y +LI
Sbjct: 62 AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDR 121
Query: 326 -------ILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+L K + + Y+ ++ C + A + + E PD T+ +
Sbjct: 122 GKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLID 181
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
C R M +LNLM E KG P T+ +L L K+ L
Sbjct: 182 GLCKDGRATHAMDLLNLMVE---KGEEPSNVTYNVLLSGLCKEGL 223
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 106/256 (41%), Gaps = 25/256 (9%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS + + L+HG C+ + A + M +HG PD V+YT I+ C++
Sbjct: 134 ISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAM 193
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
L M EKG +PS +T +++ L K + +A K+ M D Y++L+ L
Sbjct: 194 DLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGL 253
Query: 328 ------SKAVRF---------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
+A++ +N +I C A+K+ +K+ +
Sbjct: 254 CDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCG 313
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGN-AK 425
+ T+ L C ++K+ M L +++L G VP T+ +L + K + N AK
Sbjct: 314 NLVTYNMLLGGCLKAGKIKEAM---ELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAK 370
Query: 426 ERIDELLTHATEQRTF 441
E+ TH F
Sbjct: 371 GLFCEMRTHGLNPALF 386
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 124/307 (40%), Gaps = 46/307 (14%)
Query: 132 TYNAMVEALGKSKKF----GLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT 187
+YN ++ L K+KK GL+ E+ E + + + +T LMD
Sbjct: 35 SYNTLINGLCKAKKLKEAVGLLLEM-----EAAGCFPNSVTCTT------------LMDG 77
Query: 188 LVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
L K + A ++ K ++ LI G+C D ++ EM G S +
Sbjct: 78 LCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISAN 137
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY- 305
V+Y+C + CR +++ + L M E G P V+T T ++ L K + A+ +
Sbjct: 138 VVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLN 197
Query: 306 ---EKMKSDDCLTDTSFYS-----SLIFILSKAVRFLI----------YNTMISSACVRS 347
EK + +T S L+ K +R +I YNT++ C +
Sbjct: 198 LMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKG 257
Query: 348 EEGNALKLRQKI--EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ ALKL + E+ +P+ T + C + R+ + + R+M+ KG
Sbjct: 258 KVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTK---AVKIHRKMVKKGSCGN 314
Query: 406 ESTHKML 412
T+ ML
Sbjct: 315 LVTYNML 321
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 104/244 (42%), Gaps = 27/244 (11%)
Query: 182 SVLMDTLVKRNSVAHAYKV---FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
++L+ L K + A K+ +K C +L + +++L+ G K K A + K++
Sbjct: 284 NMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVT--YNMLLGGCLKAGKIKEAMELWKQV 341
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
GF P+ +Y+ I+ +C+ + EM+ G P++ +M +L K +
Sbjct: 342 LDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSL 401
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTM 339
+A ++++M + +C D ++++I KA F L ++T+
Sbjct: 402 EQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTL 461
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I+ E A +++ PD + LK K D ++NL+ +M +
Sbjct: 462 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSK---GDTTEIINLLHQMAA 518
Query: 400 KGIV 403
KG V
Sbjct: 519 KGTV 522
>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 418
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/387 (22%), Positives = 160/387 (41%), Gaps = 44/387 (11%)
Query: 59 VIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEI-----LRKRYPSPDKVVEALK 113
+IP + ++ + + +S +E ET + S+I L Y + +A++
Sbjct: 28 MIPEAKTLIQIVVSRKGKGSASAVFAEILETKGTQTSDIYVFSGLITAYLESGFLRDAIE 87
Query: 114 CFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM 173
C+ T + + +T ++E L K K F L+W +E L GY +
Sbjct: 88 CYRLT---KEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEE--SLECGYPA-------- 134
Query: 174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQ 232
++LM + VK + A VF K + S F+ L++G+ K D
Sbjct: 135 ---SLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGF 191
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ M G PD +Y+ I C+E + EM + G P+ +T T ++
Sbjct: 192 RLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGH 251
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------------- 333
K ++ A+++Y++M S D Y++LI+ L K
Sbjct: 252 CKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK 311
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ Y T+I +C + AL+ R+++ +++ + D + + C + R D +
Sbjct: 312 ITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE---KM 368
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKS 420
+REMLS G+ P+ T+ M+ E KK
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEFCKKG 395
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 91/388 (23%), Positives = 156/388 (40%), Gaps = 60/388 (15%)
Query: 51 TQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVE 110
TQ+ D + +++ES L + I + L+++H+ R + + KV+E
Sbjct: 61 TQTSDIYVFSGLITAYLESGFLRDA--IECYRLTKEHK---------FRVPFDTCRKVLE 109
Query: 111 ---ALKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM---------WEL-- 152
LK F W + GY + +N ++ + K + L W L
Sbjct: 110 HLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRP 169
Query: 153 -VKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF 201
V + L NGY+ L AM + D SVL++ L K + + A ++F
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELF 229
Query: 202 LKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
+ D + + + F LI G CK + A + K+M SPD ++Y I C++
Sbjct: 230 DEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 289
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
D ++ + EM KG KP IT T ++ K + AL+ ++M ++ D Y
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAY 349
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
++L IS C +A K+ +++ KP+ T+ + C
Sbjct: 350 TAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQEST 408
K + G L++EM G VP T
Sbjct: 394 KGDVWTGS---KLLKEMQRDGYVPSVVT 418
>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 603
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 142/331 (42%), Gaps = 43/331 (12%)
Query: 137 VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM-------RRLDTRAMSVLMDTLV 189
V A+ KS+ G+ L ++I NG ++ M + R + A ++ + LV
Sbjct: 60 VSAVSKSEASGMNGRL-QQIVSTPNGDLNGIGMESSSPNGVNGSRSFEEFASNIHLRKLV 118
Query: 190 KRNSVAHAYKVFLKFKDCISLSSQIFDV-----LIHGWCKTRKSDYAQKAMKEMFQHGFS 244
+ + LKF + + I DV LI G+C++ K+ A + M+ + G
Sbjct: 119 RNGELEEG----LKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAV 174
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD ++Y I YC+ + +D L+ ++ P V+T ++ +L + ++ EA++V
Sbjct: 175 PDVITYNVLIGGYCKSGE---IDKALQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEV 231
Query: 305 YEKMKSDDCLTDTSFYSSLIFI------LSKAVRFL-------------IYNTMISSACV 345
++ +C D Y+ LI + +A++ L YN +I+ C
Sbjct: 232 LDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICK 291
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
A+K + C+P+ TH L+ C R D L+ +ML KG P
Sbjct: 292 EGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAE---RLLADMLRKGCSPS 348
Query: 406 ESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
T +L L K+ LG A + ++++ H
Sbjct: 349 VVTFNILINFLCRKRLLGRAIDVLEKMPKHG 379
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 106/244 (43%), Gaps = 22/244 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D ++L++ + V A K+ ++ K C ++VLI+G CK + D A K
Sbjct: 243 DVITYTILIEATCNDSGVGQAMKLLDEMRKKGC-KPDVVTYNVLINGICKEGRLDEAIKF 301
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ M +G P+ +++ + C + + L +M KGC PSV+T I+++ L +
Sbjct: 302 LNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCR 361
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
+ + A+ V EKM C+ ++ L YN ++ C + A++
Sbjct: 362 KRLLGRAIDVLEKMPKHGCMPNS----------------LSYNPLLHGFCQEKKMDRAIE 405
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ + C PD T+ L C + + +LN ++ SKG P T+ + +
Sbjct: 406 YLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILN---QLSSKGCSPVLITYNTVID 462
Query: 415 ELEK 418
L K
Sbjct: 463 GLTK 466
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 107/238 (44%), Gaps = 24/238 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK--DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
++L++ L ++ + A V K C+ +S ++ L+HG+C+ +K D A + ++ M
Sbjct: 353 NILINFLCRKRLLGRAIDVLEKMPKHGCMP-NSLSYNPLLHGFCQEKKMDRAIEYLEIMV 411
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G PD V+Y + C++ L ++ KGC P +IT V+ L K +
Sbjct: 412 SRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTE 471
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
A ++ E+M+ D + Y+T++ + A+K+ +
Sbjct: 472 YAAELLEEMRRKGLKPD----------------IITYSTLLRGLGCEGKVDEAIKIFHDM 515
Query: 360 EEDSCKPDCETH-ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
E S KP T+ A L +C ++ + ++ + M+ KG P ++T+ +L E +
Sbjct: 516 EGLSIKPSAVTYNAIMLGLCKAQQTSR----AIDFLAYMVEKGCKPTKATYTILIEGI 569
>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
Length = 651
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 138/343 (40%), Gaps = 73/343 (21%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY ++ + + +L++E+ SNG+ A + T LM L
Sbjct: 11 TYGILIRGFSSAGDLDIAIQLLEEMK--SNGFEGNAVVHTT-----------LMKGLCDA 57
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A + F KDC + + L+H CK K D AQ ++EM G +PD V++
Sbjct: 58 GRVVEALEHFRAMAKDC-APDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTF 116
Query: 251 TCFIEHYCR----EKDFRKVD------------------------YTLKEMQE------- 275
+ I+ C+ E+ FR ++ Y E+
Sbjct: 117 STLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVI 176
Query: 276 -KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
KG P+V+ +V++ KAK + A K+ E M C+ + ++ LI L KA R
Sbjct: 177 AKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVG 236
Query: 333 -----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ Y+T+I+ C + + +A +L Q +E +C P+ TH +
Sbjct: 237 EAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILI 296
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
C KR+++ + + MRE G P T+ L + L K
Sbjct: 297 DGLCKAKRIEEARQLYHRMRE---TGCAPDIITYNSLIDGLCK 336
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 120/275 (43%), Gaps = 30/275 (10%)
Query: 156 IDELSNGYVSLAAMSTVMRRLDTRAMS--VLMDTLV-----KRNSVAHAYKVF--LKFKD 206
I L N Y S+ S V+ + + + VLM LV K + AYK+ + K
Sbjct: 155 IQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKG 214
Query: 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
C+ + F +LI G CK + AQ+ +++M G SP+ V+Y+ I C++
Sbjct: 215 CVP-NVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDA 273
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
+ M+ + C P+V+T I++ L KAK+I EA ++Y +M+ C D
Sbjct: 274 YELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPD---------- 323
Query: 327 LSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK-PDCETHARSLKMCCHKKRMK 385
+ YN++I C + A +L Q I E + T++ RM
Sbjct: 324 ------IITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMA 377
Query: 386 DGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
D + ++ ++ KG P +T+ L E K S
Sbjct: 378 DACRIFSM---LVDKGFSPDLATYTSLILEYCKTS 409
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 2/149 (1%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+D L K V A+++F + +S ++ + + L HG+ + A + +
Sbjct: 330 LIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDK 389
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
GFSPD +YT I YC+ +V ++EM KG P V T + V+ L + A
Sbjct: 390 GFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERA 449
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
+++++ M + C D Y+ ++ +++A
Sbjct: 450 IQLFDSMAARGCTDDALIYNLVVEGMARA 478
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 103/243 (42%), Gaps = 27/243 (11%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQ 232
R++T +S ++ L + N A ++F + + C + I+++++ G + K + A
Sbjct: 429 RVNT--LSAVLGGLFEGNHTERAIQLFDSMAARGCTD-DALIYNLVVEGMARASKHNKAL 485
Query: 233 KAMKEMFQ---HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
++++ F+P + +E C+ L +M E+G +V + ++
Sbjct: 486 AVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLL 545
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE 349
L + ++ EA +V+E M S A N +IS C ++
Sbjct: 546 SGLSRLQRWDEATQVFEAMVS----------------AGPAPEISTVNVVISWLCSAAKV 589
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
+A +L Q++ + C PD ET + C R L L+ EM G+ P ++TH
Sbjct: 590 DDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRAD---LARKLLEEMTEAGLEPNDTTH 646
Query: 410 KML 412
+L
Sbjct: 647 DLL 649
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 20/175 (11%)
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P+ +Y I + D L+EM+ G + + + T +M L A ++ EAL+
Sbjct: 7 PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEH 66
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
+ M + DC D Y++L+ L KA +F +E + LR+ I C
Sbjct: 67 FRAM-AKDCAPDVMTYTALVHALCKAGKF--------------DEAQGM-LREMIAR-GC 109
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
PD T + + C + VL +++ +G+ ++ + + + L K
Sbjct: 110 APDTVTFSTLIDGLCKFGSEEQAFRVL---EDVIQRGMGNSDAAFETIIQRLCNK 161
>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 114/259 (44%), Gaps = 24/259 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ +++VL++ L + N V A + K FK I ++ F+ LI+G C K A +
Sbjct: 122 NVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELF 181
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM + G P+ +SY I C+ + K+M++ GCKP V+T ++ +L K
Sbjct: 182 NEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKD 241
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV--RFLIYNTMISSACVRSEEGNAL 353
+ + +A++ +M L + + YN M+ C+ + A
Sbjct: 242 RLVNDAMEFLSEM------------------LDRGIPPNVFTYNCMVHGFCILGQLNEAT 283
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
+L +++ PD T + C + + + LV M E KG+ P ST+ L
Sbjct: 284 RLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTE---KGVEPNISTYNALM 340
Query: 414 EELEKKSLGNAKERIDELL 432
+ + L N +++ E++
Sbjct: 341 DGYCLQRLMNEAKKVFEIM 359
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 103/234 (44%), Gaps = 24/234 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I+G CKT + A K+M Q+G PD V+Y I+ C+++ L EM
Sbjct: 196 YNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEML 255
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
++G P+V T ++H Q+ EA +++++M D + DT + L+ L K
Sbjct: 256 DRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVS 315
Query: 330 AVRFLI--------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
R + YN ++ C++ A K+ + + C P ++ +
Sbjct: 316 EARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILI 375
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
C +RM + +L+ EM K + P T+ L + L + G KE ++
Sbjct: 376 NGFCKSRRMDEAK---SLLAEMYHKALNPDTVTYSTLMQGLCQ--FGRPKEALN 424
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 133/320 (41%), Gaps = 56/320 (17%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMSTVMRRL--- 176
TYN ++++L K + E + E+ + + +G+ L ++ R
Sbjct: 230 TYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEM 289
Query: 177 -------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKS 228
DT +++L+D L K V+ A VF + + + ++ L+ G+C R
Sbjct: 290 VGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLM 349
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+ A+K + M + G +P SY I +C+ + + L EM K P +T + +
Sbjct: 350 NEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTL 409
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
M L + + EAL ++++M S L + + Y+ ++ C
Sbjct: 410 MQGLCQFGRPKEALNIFKEMCSYGLLPN----------------LVTYSILLDGFCKHGH 453
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV---LNLMREMLSK----G 401
ALKL + ++E +P+ H + +GM + L + +E+ SK G
Sbjct: 454 LDEALKLLKSMQEKKLEPN----------IVHHTILIEGMFIAGKLEVAKELFSKLFADG 503
Query: 402 IVPQESTHKMLAEELEKKSL 421
I P T+ ++ + L K+ L
Sbjct: 504 IRPTIRTYTVMIKGLLKEGL 523
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 112/253 (44%), Gaps = 23/253 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ LMD + + A KVF + + + +++LI+G+CK+R+ D A+ + EM+
Sbjct: 337 NALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYH 396
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
+PD V+Y+ ++ C+ ++ KEM G P+++T +I++ K + E
Sbjct: 397 KALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDE 456
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI---FILSK--------------AVRFLI--YNTMIS 341
ALK+ + M+ + ++ LI FI K +R I Y MI
Sbjct: 457 ALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIK 516
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
A L +K+E+D P+ ++ ++ +D + L+ EM+ K
Sbjct: 517 GLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQN---QDSSTAIRLIDEMVGKR 573
Query: 402 IVPQESTHKMLAE 414
ST +ML +
Sbjct: 574 FSANLSTFQMLLD 586
>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 17/213 (7%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKA 234
+D + L+ K + A +++ + K+ + S I ++ +I G C+ K++ A
Sbjct: 475 VDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDK 534
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ E+ + G PD ++Y I YC+E K +M EK KP V+TC ++ L K
Sbjct: 535 LDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCK 594
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
+ +ALK++ S K V + YNT+I S C G A
Sbjct: 595 EGMLEKALKLFNTWISK----------------GKDVDAVSYNTIILSLCKEKRFGEAFD 638
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
L +++EE PDC T+ L RMKD
Sbjct: 639 LLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDA 671
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 115/262 (43%), Gaps = 27/262 (10%)
Query: 167 AAMSTVMRRLDTRAM----SVLMDTLVK---RNSVAHAYKVFLKF-KDCISLSSQIFDVL 218
A + M+RL + + L++ LV+ +S+ + VF F K + +++ F++L
Sbjct: 144 AQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKINTNSFNIL 203
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
IHG C + A + + +M +G PD ++Y ++ C++ + L +M+ KG
Sbjct: 204 IHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGL 263
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNT 338
P+ T I++ + + EA V E M + + D YN
Sbjct: 264 FPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDA----------------WTYNV 307
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
MIS C + A++LR+++E PD T+ + C ++G L+ EM
Sbjct: 308 MISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEG---FKLIEEME 364
Query: 399 SKGIVPQESTHKMLAEELEKKS 420
+G+ P T+ ++ + KK
Sbjct: 365 GRGMKPNSVTYNVMVKWFVKKG 386
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/257 (19%), Positives = 114/257 (44%), Gaps = 25/257 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKA 234
D +V++ K+ +A A ++ + ++ + LS + ++ LI+G + S+ K
Sbjct: 301 DAWTYNVMISGFCKQGRIAEAMRLREEMEN-LKLSPDVVTYNTLINGCFEHGSSEEGFKL 359
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
++EM G P+ V+Y ++ + ++ +VD T+++M+E GC P ++T ++ K
Sbjct: 360 IEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCK 419
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LI 335
++ EA ++ ++M D ++++ L + + +
Sbjct: 420 VGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVS 479
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
Y T+I + AL+L +++E P T+ + C + ++ +
Sbjct: 480 YGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQA---IDKLD 536
Query: 396 EMLSKGIVPQESTHKML 412
E+L G+VP E T+ +
Sbjct: 537 ELLESGLVPDEITYNTI 553
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 75/344 (21%), Positives = 136/344 (39%), Gaps = 50/344 (14%)
Query: 104 SPDKVV-EALKCFCFTWAKTQTGYMHTPE-----------TYNAMVEALGKSKKFGLMWE 151
SPD V L CF ++ G+ E TYN MV+ K K + +
Sbjct: 334 SPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDK 393
Query: 152 LVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISL 210
V++++E +G + D + L+ K + A+++ + + + +
Sbjct: 394 TVRKMEE--SGCLP-----------DIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKM 440
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
+ ++ C+ RK D A + + G+ D VSY I Y + + +
Sbjct: 441 DDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLW 500
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
EM+EK PS+IT ++ L + + +A+ +++ + D
Sbjct: 501 DEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDE------------- 547
Query: 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML- 389
+ YNT+I C + A + K+ E + KPD T L C K+GML
Sbjct: 548 ---ITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLC-----KEGMLE 599
Query: 390 -VLNLMREMLSKGI-VPQESTHKMLAEELEKKSLGNAKERIDEL 431
L L +SKG V S + ++ ++K G A + ++E+
Sbjct: 600 KALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEM 643
>gi|302776386|ref|XP_002971363.1| hypothetical protein SELMODRAFT_451140 [Selaginella moellendorffii]
gi|300161345|gb|EFJ27961.1| hypothetical protein SELMODRAFT_451140 [Selaginella moellendorffii]
Length = 745
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 28/230 (12%)
Query: 108 VVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLA 167
V AL+ F W + Q GY H Y M+ LG+ F + EL+ ++ S+ VS+
Sbjct: 482 VTAALRFFY--WVEKQPGYKHDSFVYTKMISLLGRHHHFSQVEELLMKLQS-SDIEVSIV 538
Query: 168 AMSTVMRRLDTRAMSVLMDTLVKRNSVAH----AYKVFLKFKDC-ISLSSQIFDVLIHGW 222
M++++ L SV+H A K+F KD + +++ + +I
Sbjct: 539 TMNSIIFTL----------------SVSHNPDLAMKIFYWMKDLKVKPNTRTYTTVIDML 582
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
K R D A +EM G PD +YT I+ RE ++ L++M GCKP+V
Sbjct: 583 VKMRHFDRAMAIYQEMLDAGCKPDAHTYTVLIQSLGREGKIDAAEHLLEKMPLNGCKPNV 642
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
+ T ++++L ++ AL V+++M+ + + ++ YS ++SK ++
Sbjct: 643 VNYTSLINSLIHYGRVSHALAVFKRMQDEGVMPNSITYS----LMSKGLK 688
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 47/194 (24%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F W K GY HT TYN+++E G+ K
Sbjct: 168 FQWLKGVEGYRHTEHTYNSLIEVFGRVK-------------------------------- 195
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
D + ++D + AY C ++ +F +IH + + D A +
Sbjct: 196 DVTGIQKVLDDM-------SAY-------GC-GMNVVLFTTVIHWYSRADDIDRAVEMWN 240
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
+M + G P+ V+YT + + K FR+V K+M GC+P+V T T+++ L +
Sbjct: 241 QMLKVGCLPNVVTYTMLMSLLTKLKRFRQVGEIFKDMVSAGCRPNVRTYTVLIQCLASSG 300
Query: 297 QIYEALKVYEKMKS 310
+ AL V+EK+ S
Sbjct: 301 NLDAALLVFEKLDS 314
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+Y IE + R KD + L +M GC +V+ T V+H +A I A++++ +M
Sbjct: 183 TYNSLIEVFGRVKDVTGIQKVLDDMSAYGCGMNVVLFTTVIHWYSRADDIDRAVEMWNQM 242
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRFL----IYNTMISSAC 344
CL + Y+ L+ +L+K RF I+ M+S+ C
Sbjct: 243 LKVGCLPNVVTYTMLMSLLTKLKRFRQVGEIFKDMVSAGC 282
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 90/201 (44%), Gaps = 22/201 (10%)
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
Q G+ D YT I R F +V+ L ++Q + S++T ++ L +
Sbjct: 495 QPGYKHDSFVYTKMISLLGRHHHFSQVEELLMKLQSSDIEVSIVTMNSIIFTLSVSHNPD 554
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----LIYNTMISSAC----------V 345
A+K++ MK +T Y+++I +L K F IY M+ + C +
Sbjct: 555 LAMKIFYWMKDLKVKPNTRTYTTVIDMLVKMRHFDRAMAIYQEMLDAGCKPDAHTYTVLI 614
Query: 346 RS--EEGN---ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+S EG A L +K+ + CKP+ + + H R+ + V M++ +
Sbjct: 615 QSLGREGKIDAAEHLLEKMPLNGCKPNVVNYTSLINSLIHYGRVSHALAVFKRMQD---E 671
Query: 401 GIVPQESTHKMLAEELEKKSL 421
G++P T+ ++++ L++ ++
Sbjct: 672 GVMPNSITYSLMSKGLKRANM 692
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 61/131 (46%)
Query: 194 VAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A + +LK + + ++ LI + + + QK + +M +G + V +T
Sbjct: 163 AAWGFFQWLKGVEGYRHTEHTYNSLIEVFGRVKDVTGIQKVLDDMSAYGCGMNVVLFTTV 222
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I Y R D + +M + GC P+V+T T++M L K K+ + ++++ M S C
Sbjct: 223 IHWYSRADDIDRAVEMWNQMLKVGCLPNVVTYTMLMSLLTKLKRFRQVGEIFKDMVSAGC 282
Query: 314 LTDTSFYSSLI 324
+ Y+ LI
Sbjct: 283 RPNVRTYTVLI 293
>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
Length = 699
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 120/275 (43%), Gaps = 30/275 (10%)
Query: 156 IDELSNGYVSLAAMSTVMRRLDTRAMS--VLMDTLV-----KRNSVAHAYKVF--LKFKD 206
I L N Y S+ S V+ + + + VLM LV K + AYK+ + K
Sbjct: 203 IQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKG 262
Query: 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
C+ + F +LI G CK + AQ+ +++M G SP+ V+Y+ I C++
Sbjct: 263 CVP-NVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDA 321
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
+ M+ + C P+V+T I++ L KAK+I EA ++Y +M+ C D
Sbjct: 322 YELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPD---------- 371
Query: 327 LSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK-PDCETHARSLKMCCHKKRMK 385
+ YN++I C + A +L Q I E + T++ RM
Sbjct: 372 ------IITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMA 425
Query: 386 DGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
D + ++ ++ KG P +T+ L E K S
Sbjct: 426 DACRIFSM---LVDKGFSPDLATYTSLILEYCKTS 457
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 138/343 (40%), Gaps = 73/343 (21%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY ++ + + +L++E+ S+G+ A + T LM L
Sbjct: 59 TYGILIRGFSSAGDLDIAIQLLEEMK--SSGFEGNAVVHTT-----------LMKGLCDA 105
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A + F KDC + + L+H CK K D AQ ++EM G +PD V++
Sbjct: 106 GRVVEALEHFRAMAKDC-APDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTF 164
Query: 251 TCFIEHYCR----EKDFRKVD------------------------YTLKEMQE------- 275
+ I+ C+ E+ FR ++ Y E+
Sbjct: 165 STLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVI 224
Query: 276 -KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
KG P+V+ +V++ KAK + A K+ E M C+ + ++ LI L KA R
Sbjct: 225 AKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVG 284
Query: 333 -----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ Y+T+I+ C + + +A +L Q +E +C P+ TH +
Sbjct: 285 EAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILI 344
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
C KR+++ + + MRE G P T+ L + L K
Sbjct: 345 DGLCKAKRIEEARQLYHRMRE---TGCAPDIITYNSLIDGLCK 384
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 2/149 (1%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+D L K V A+++F + +S ++ + + L HG+ + A + +
Sbjct: 378 LIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDK 437
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
GFSPD +YT I YC+ +V ++EM KG P V T + V+ L + A
Sbjct: 438 GFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERA 497
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
+++++ M + C D Y+ ++ +++A
Sbjct: 498 IQLFDSMAARGCTDDALIYNLVVEGMARA 526
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 103/243 (42%), Gaps = 27/243 (11%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQ 232
R++T +S ++ L + N A ++F + + C + I+++++ G + K D A
Sbjct: 477 RVNT--LSAVLGGLFEGNHTERAIQLFDSMAARGCTD-DALIYNLVVEGMARASKHDKAL 533
Query: 233 KAMKEMFQ---HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
++++ F+P + +E C+ L +M E+G +V + ++
Sbjct: 534 AVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLL 593
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE 349
L + ++ EA +V+E M S A N +IS C ++
Sbjct: 594 SGLSRLQRWDEATQVFEAMVS----------------AGPAPEISTVNVVISWLCSAAKV 637
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
+A +L Q++ + C PD ET + C R L L+ EM G+ P ++TH
Sbjct: 638 DDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRAD---LARKLLEEMTEAGLEPNDTTH 694
Query: 410 KML 412
+L
Sbjct: 695 DLL 697
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 20/175 (11%)
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P+ +Y I + D L+EM+ G + + + T +M L A ++ EAL+
Sbjct: 55 PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEH 114
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
+ M + DC D Y++L+ L KA +F +E + LR+ + + C
Sbjct: 115 FRAM-AKDCAPDVMTYTALVHALCKAGKF--------------DEAQGM-LREMVAQ-GC 157
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
PD T + + C + VL +++ +G+ ++ + + + L K
Sbjct: 158 APDTVTFSTLIDGLCKFGSEEQAFRVL---EDVIQRGMGNSDAAFETIIQRLCNK 209
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 69/170 (40%), Gaps = 20/170 (11%)
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
S C ++ CR ++ + + C P+ T I++ A + A+++ E+M
Sbjct: 24 SCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEM 83
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
KS + F + + ++ T++ C AL+ + + +D C PD
Sbjct: 84 KS------SGFEGNAV----------VHTTLMKGLCDAGRVVEALEHFRAMAKD-CAPDV 126
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
T+ + C + + ++REM+++G P T L + L K
Sbjct: 127 MTYTALVHALCKAGKFDEAQ---GMLREMVAQGCAPDTVTFSTLIDGLCK 173
>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
Length = 617
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 115/273 (42%), Gaps = 26/273 (9%)
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ A++ L+ L VA A +FL+F I ++ ++ L+ G+ + A++ +
Sbjct: 263 SNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVL 322
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM Q G +PD +Y+ ++ Y R + LKEM+ G KPS + ++
Sbjct: 323 DEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDR 382
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIY 336
+A V +M++ D FY+ +I K + +
Sbjct: 383 GDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTW 442
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT+I + C A +L +++ E +C P T+ + + ++ + V ++ E
Sbjct: 443 NTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEG---VEAMLSE 499
Query: 397 MLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
M +G+VP T+ L + + G KE ID
Sbjct: 500 MKEQGLVPNIITYTTLVDVYGRS--GRYKEAID 530
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 100/216 (46%), Gaps = 6/216 (2%)
Query: 162 GYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIH 220
+ L M R D +V++DT K N + HA F K ++ I ++ LI
Sbjct: 388 AFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLID 447
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
CK + D A + +EM + P +Y I ++ + V+ L EM+E+G P
Sbjct: 448 AHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVP 507
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS-KAVR--FLIYN 337
++IT T ++ ++ + EA+ E MK+D + Y +L+ + + +R + Y
Sbjct: 508 NIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLRPDVITYT 567
Query: 338 TMISSACVRSEEGNALK-LRQKIEEDSCKPDCETHA 372
T++ A +R E+ + + + +++ C PD + A
Sbjct: 568 TLM-KALIRVEQFDKVPVIYEEMITSGCAPDRKARA 602
>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
Length = 853
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 131/323 (40%), Gaps = 51/323 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI-------------------- 156
F W K Q G+ H TY M+ LG++++FG++ +L+ E+
Sbjct: 347 FQWLKRQPGFKHDGHTYTTMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRIIHAYG 406
Query: 157 --DELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
+ L M D L+D K + A ++ + ++ + LS
Sbjct: 407 RANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQE-VGLSPDT 465
Query: 215 F--DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
F +++ K + A K EM ++G +P+ V+Y I + +++ V K+
Sbjct: 466 FTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKD 525
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
MQ G +P IT +IVM L + EA V+ +M+ D D Y L+ + KA
Sbjct: 526 MQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRR-DWAPDEPVYGLLVDLWGKA-- 582
Query: 333 FLIYNTMISSACVRSEEGN---ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
GN AL Q + +D +P+ T L R +D +
Sbjct: 583 -----------------GNVDKALGWYQAMLQDGLQPNVPTCNSLLSAFLKMNRFQDAYI 625
Query: 390 VLNLMREMLSKGIVPQESTHKML 412
VL + ML++G+VP T+ +L
Sbjct: 626 VL---QNMLAQGLVPSVQTYTLL 645
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 22/196 (11%)
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
Q GF DG +YT I + + F + L EM CKP+V+T ++HA +A +
Sbjct: 353 QPGFKHDGHTYTTMIGILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRIIHAYGRANYLK 412
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI-------------------YNTMI 340
EA+KV+E+M+ D Y +LI I +KA I Y+ M+
Sbjct: 413 EAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMV 472
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+ + A KL ++ E+ C P+ T+ + + + ++ V+ L ++M
Sbjct: 473 NCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYEN---VVKLYKDMQVA 529
Query: 401 GIVPQESTHKMLAEEL 416
G P + T+ ++ E L
Sbjct: 530 GFRPDKITYSIVMEVL 545
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 29/249 (11%)
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
L+ ++VA + +LK + + +I + R+ +K + EM + P
Sbjct: 336 LLHDHTVALGFFQWLKRQPGFKHDGHTYTTMIGILGQARQFGVLKKLLDEMSRAHCKPTV 395
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT-CTIV-MHALEKAKQIYEALKVY 305
V+Y I Y R ++ +EMQE G +P +T CT++ +HA KA + A+ +Y
Sbjct: 396 VTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHA--KAGYLDIAMDLY 453
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMIS-SACV 345
+M+ DT YS+++ L K + + YN MI+ A
Sbjct: 454 GRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKA 513
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
R+ E N +KL + ++ +PD T++ +++ H + + V MR + P
Sbjct: 514 RNYE-NVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMR----RDWAPD 568
Query: 406 ESTHKMLAE 414
E + +L +
Sbjct: 569 EPVYGLLVD 577
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 72/180 (40%), Gaps = 22/180 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELS--------NGYVSLAA--------------M 169
TY+AMV LGK + ++L E+ E N ++L A M
Sbjct: 467 TYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDM 526
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSD 229
R D S++M+ L + A VF++ + + ++ +L+ W K D
Sbjct: 527 QVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRRDWAPDEPVYGLLVDLWGKAGNVD 586
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
A + M Q G P+ + + + + F+ L+ M +G PSV T T+++
Sbjct: 587 KALGWYQAMLQDGLQPNVPTCNSLLSAFLKMNRFQDAYIVLQNMLAQGLVPSVQTYTLLL 646
>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
Length = 524
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 139/332 (41%), Gaps = 77/332 (23%)
Query: 145 KFGLMWELVKEIDE-LSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK 203
K G M + VK DE L+ G V+ +A V+ + L+ V L+
Sbjct: 195 KIGRMEDAVKVFDEMLTKGEVAPSA--------------VMYNALIGGYCDVGKLDVALQ 240
Query: 204 FKD-----CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258
+++ I+++ +++L+H ++ A ++EM ++GFSPD +Y I YC
Sbjct: 241 YREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYC 300
Query: 259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI-------------------- 298
+E + +K +EM +KG + + +T T +++ + Q+
Sbjct: 301 KEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVV 360
Query: 299 -YEAL-----------KVYE--------KMKSDDCLTDTSFYSSLIFILSKAVRFLI--- 335
Y AL + YE ++ DD +T + R LI
Sbjct: 361 MYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEM 420
Query: 336 -----------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
YNT+IS ++ + +AL++R ++ + P T+ ++ C ++
Sbjct: 421 TKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQG 480
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
D NLM+EM++KGI P +ST+ L E L
Sbjct: 481 DDAE---NLMKEMVAKGITPDDSTYISLIEGL 509
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 115/297 (38%), Gaps = 60/297 (20%)
Query: 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDY 230
M R + + ++ R V A +V ++ + I+ + LI GWCK + +
Sbjct: 142 MPRPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMED 201
Query: 231 AQKAMKEMFQHG-FSPDGVSYTCFIEHYC-----------REK----------------- 261
A K EM G +P V Y I YC RE
Sbjct: 202 AVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLM 261
Query: 262 -----DFRKVD--YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
D R D L+EMQ+ G P V T I+++ K +AL+V+E+M
Sbjct: 262 HALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVR 321
Query: 315 TDTSFYSSLIFILS-----------------KAVR--FLIYNTMISSACVRSEEGNALKL 355
Y+SLI++ S K +R ++YN +I+S C + A ++
Sbjct: 322 ATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEI 381
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
++E+ PD T+ ++ C R+ + L+ EM +GI P ++ L
Sbjct: 382 MAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEAR---TLIDEMTKRGIQPDLVSYNTL 435
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 14/204 (6%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+Q G T TY +++ + + V+E D L N V R D
Sbjct: 316 SQKGVRATAVTYTSLIYVFSRKGQ-------VQETDRLFNVAVKKGI------RPDVVMY 362
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L+++ + AY++ + K I ++ L+ G+C + D A+ + EM +
Sbjct: 363 NALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTK 422
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD VSY I Y + D + EM +KG P+++T ++ L K +Q +
Sbjct: 423 RGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDD 482
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI 324
A + ++M + D S Y SLI
Sbjct: 483 AENLMKEMVAKGITPDDSTYISLI 506
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 23/153 (15%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMSTVMRRLDTRA 180
YNA++ + +E++ E+++ L G+ L + +D
Sbjct: 362 YNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMT 421
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD-----------VLIHGWCKTRKSD 229
+ LV N++ Y + KD + + ++ D LI G CK R+ D
Sbjct: 422 KRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGD 481
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
A+ MKEM G +PD +Y IE E +
Sbjct: 482 DAENLMKEMVAKGITPDDSTYISLIEGLTTEDE 514
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 97/234 (41%), Gaps = 29/234 (12%)
Query: 195 AHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A A+ +F ++ + L + F++++ C T K A + +++M + P+ V+Y
Sbjct: 98 APAFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELLRQMPR----PNAVTYNTV 153
Query: 254 IEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I +C + ++EM+E+ G P T ++ K ++ +A+KV+++M
Sbjct: 154 IAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEM---- 209
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
LT S + +YN +I C + AL+ R+ + + T+
Sbjct: 210 -LTKGEVAPSAV----------MYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYN 258
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA-----EELEKKSL 421
+ R D VL EM G P T+ +L E EKK+L
Sbjct: 259 LLMHALFMDARASDAYAVLE---EMQKNGFSPDVFTYNILINGYCKEGNEKKAL 309
>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
Length = 773
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 148/332 (44%), Gaps = 47/332 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKE---IDELSN--------GYVS-----------LAAM 169
+YNA+++ L +K++G + EL+ E +D N GY+ LA M
Sbjct: 218 SYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQM 277
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRK 227
S D R + ++D + K + A ++ + L + ++ ++ G C +
Sbjct: 278 SEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPS-YGLKPNVVCYNTVLKGLCSAER 336
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
A++ + EMFQ D V++ ++ +C+ +V L++M GC P VIT T
Sbjct: 337 WKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTT 396
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------- 333
V++ K I EA+ + + M S C +T Y+ ++ L A R+
Sbjct: 397 VINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456
Query: 334 -----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
+ +NT+I+ C + A++L +++ + C PD +++ + + ++ +
Sbjct: 457 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 516
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+LN+ M++KGI P + +A L ++
Sbjct: 517 ELLNV---MVNKGISPNTIIYSSIACALSREG 545
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 107/244 (43%), Gaps = 25/244 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +++ G C + A++ M +M Q G P+ V++ I C++ + LK+M
Sbjct: 429 YTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQML 488
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
GC P +I+ + V+ L KA + EAL++ M + +T YSS+ LS+ R
Sbjct: 489 VNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVN 548
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++YN +ISS C R E A+ + + C P+ T+ +
Sbjct: 549 KVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLI 608
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA 435
K + K+ L+ E+ S+G + + H M + + N K++ +E LT A
Sbjct: 609 KGLASEGLAKEAQ---ELLSELCSRGALRK---HLMRHFGISNCTQENGKQKCEENLTSA 662
Query: 436 TEQR 439
+
Sbjct: 663 VDNN 666
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 22/210 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F ++ G C + A + + EM G +P Y +E CR FR L+ M
Sbjct: 114 FFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMH 173
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
KGC C +V++A+ + + EA+ + K+ C D Y++++ L A R+
Sbjct: 174 AKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWG 233
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ +NT+I C ++ ++ E C PD +A +
Sbjct: 234 DVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATII 293
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
C + ++ +LN M S G+ P
Sbjct: 294 DGICKEGHLEVANEILN---RMPSYGLKPN 320
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 50/270 (18%), Positives = 109/270 (40%), Gaps = 26/270 (9%)
Query: 188 LVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L R +A A +V + FK C + ++ V++ C++ + + ++ M G +
Sbjct: 121 LCTRGRIADALEVLDEMSFKGCAPIPP-MYHVILEAACRSGGFRNSVRVLEAMHAKGCTL 179
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D + + C + + L+++ GC+ +++ V+ L AK+ + ++
Sbjct: 180 DTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELM 239
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVR 346
++M DC + +++LI L + F +Y T+I C
Sbjct: 240 DEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKE 299
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
A ++ ++ KP+ + LK C +R K+ L+ EM K +
Sbjct: 300 GHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAE---ELLSEMFQKDCPLDD 356
Query: 407 STHKMLAEELEKKSLGN-AKERIDELLTHA 435
T +L + + L + E ++++L+H
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHG 386
>gi|297821008|ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324225|gb|EFH54646.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 766
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 113/272 (41%), Gaps = 37/272 (13%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
+NA++ LG++ G M LV ++DE+ R D + +L++TL K
Sbjct: 297 FNALLSCLGRNMNIGRMNALVLKMDEMK-------------IRPDVVTLGILINTLCKSR 343
Query: 193 SVAHAYKVFLKF-------KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM-FQHGFS 244
V A +VF + + I S F+ LI G CK + A++ + M +
Sbjct: 344 RVDEALQVFEQMCGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKMEERCV 403
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P+ V+Y C I+ YCR + M+E G KP V+T ++ + + + A+
Sbjct: 404 PNTVTYNCLIDGYCRAGKLETAKEVVSRMKEDGIKPDVVTVNTIVGGMCRHHGLNMAVLF 463
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
+ M+ + + + Y T+I + C S A+ K+ E C
Sbjct: 464 FMDMEKEGVKGNV----------------VTYMTLIHACCSLSNIEKAMHWFDKMLEAGC 507
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
PD + + + C +R D + V+ +RE
Sbjct: 508 SPDAKIYYALISGLCQVRRDHDAIRVVEKLRE 539
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 105/221 (47%), Gaps = 19/221 (8%)
Query: 197 AYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255
A +V K ++ SL +++LI +C ++ + + +M + G PD ++Y I
Sbjct: 530 AIRVVEKLREGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGMKPDSITYNTLIS 589
Query: 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315
+ + KDF V+ +++M+E P+V T V+ A ++ EALK+++ M +
Sbjct: 590 FFGKHKDFESVERMMEQMREDELDPTVATYGAVIEAYCSVGELGEALKLFKDMGLRSKVN 649
Query: 316 DTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ +IYN +I++ G AL L+++++ +P+ ET+
Sbjct: 650 PNT---------------VIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALF 694
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
K C +K + + L LM EM+ + P + T ++L E L
Sbjct: 695 K-CLKEKNQAETL--LKLMDEMVEQSCEPNQITMEILMERL 732
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 124/298 (41%), Gaps = 68/298 (22%)
Query: 162 GYVSLAAMST-VMRRLDT-----RAMSVLMDTLVKRNSVAHAYKVF---LKFKDCISLSS 212
G + +A S V RLD+ + +V++D L++ V A+KV L+ + +
Sbjct: 163 GRMGMANQSVLVYERLDSNMKNSQVRNVVIDVLLRNGLVDDAFKVLDEMLQKESVFPPNR 222
Query: 213 QIFDVLIHGWCKTR--KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC------------ 258
D+++H K R + + HG SP+ V T FI C
Sbjct: 223 ITADIVLHEVWKGRLLTEEKIIGLISRFSSHGVSPNSVWLTRFISSLCKNARTNAAWDIL 282
Query: 259 -----------------------REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
R + +++ + +M E +P V+T I+++ L K+
Sbjct: 283 SDLMKNKAPLEAPPFNALLSCLGRNMNIGRMNALVLKMDEMKIRPDVVTLGILINTLCKS 342
Query: 296 KQIYEALKVYEKM---KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC--VRSEEG 350
+++ EAL+V+E+M ++DD I + ++ F NT+I C R +E
Sbjct: 343 RRVDEALQVFEQMCGKRTDDGNV----------IKADSIHF---NTLIDGLCKVGRLKEA 389
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
L +R K+EE C P+ T+ + C +++ V++ M+E GI P T
Sbjct: 390 EELLVRMKMEE-RCVPNTVTYNCLIDGYCRAGKLETAKEVVSRMKE---DGIKPDVVT 443
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 83/194 (42%), Gaps = 18/194 (9%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
LD A ++L+ +N+ Y++ K+ + S ++ LI + K + + ++
Sbjct: 544 LDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGMKPDSITYNTLISFFGKHKDFESVERM 603
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG-CKPSVITCTIVMHALE 293
M++M + P +Y IE YC + + K+M + P+ + I+++A
Sbjct: 604 MEQMREDELDPTVATYGAVIEAYCSVGELGEALKLFKDMGLRSKVNPNTVIYNILINAFS 663
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
K +AL + E+MK + Y++L L + +++ L
Sbjct: 664 KLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLKE----------------KNQAETLL 707
Query: 354 KLRQKIEEDSCKPD 367
KL ++ E SC+P+
Sbjct: 708 KLMDEMVEQSCEPN 721
>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
Length = 772
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 148/332 (44%), Gaps = 47/332 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKE---IDELSN--------GYVS-----------LAAM 169
+YNA+++ L +K++G + EL+ E +D N GY+ LA M
Sbjct: 218 SYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQM 277
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRK 227
S D R + ++D + K + A ++ + L + ++ ++ G C +
Sbjct: 278 SEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPS-YGLKPNVVCYNTVLKGLCSAER 336
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
A++ + EMFQ D V++ ++ +C+ +V L++M GC P VIT T
Sbjct: 337 WKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTT 396
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------- 333
V++ K I EA+ + + M S C +T Y+ ++ L A R+
Sbjct: 397 VINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456
Query: 334 -----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
+ +NT+I+ C + A++L +++ + C PD +++ + + ++ +
Sbjct: 457 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 516
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+LN+ M++KGI P + +A L ++
Sbjct: 517 ELLNV---MVNKGISPNTIIYSSIACALSREG 545
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 107/244 (43%), Gaps = 25/244 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +++ G C + A++ M +M Q G P+ V++ I C++ + LK+M
Sbjct: 429 YTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQML 488
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
GC P +I+ + V+ L KA + EAL++ M + +T YSS+ LS+ R
Sbjct: 489 VNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVN 548
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++YN +ISS C R E A+ + + C P+ T+ +
Sbjct: 549 KVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLI 608
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA 435
K + K+ L+ E+ S+G + + H M + + N K++ +E LT A
Sbjct: 609 KGLASEGLAKEAQ---ELLSELCSRGALRK---HLMRHFGISNCTQENGKQKCEENLTSA 662
Query: 436 TEQR 439
+
Sbjct: 663 VDNN 666
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 22/210 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F ++ G C + A + + EM G +P Y +E CR FR L+ M
Sbjct: 114 FFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMH 173
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
KGC C +V++A+ + + EA+ + K+ C D Y++++ L A R+
Sbjct: 174 AKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWG 233
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ +NT+I C ++ ++ E C PD +A +
Sbjct: 234 DVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATII 293
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
C + ++ +LN M S G+ P
Sbjct: 294 DGICKEGHLEVANEILN---RMPSYGLKPN 320
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 50/270 (18%), Positives = 109/270 (40%), Gaps = 26/270 (9%)
Query: 188 LVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L R +A A +V + FK C + ++ V++ C++ + + ++ M G +
Sbjct: 121 LCTRGRIADALEVLDEMSFKGCAPIPP-MYHVILEAACRSGGFRNSVRVLEAMHAKGCTL 179
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D + + C + + L+++ GC+ +++ V+ L AK+ + ++
Sbjct: 180 DTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELM 239
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVR 346
++M DC + +++LI L + F +Y T+I C
Sbjct: 240 DEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKE 299
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
A ++ ++ KP+ + LK C +R K+ L+ EM K +
Sbjct: 300 GHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAE---ELLSEMFQKDCPLDD 356
Query: 407 STHKMLAEELEKKSLGN-AKERIDELLTHA 435
T +L + + L + E ++++L+H
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHG 386
>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 642
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 90/380 (23%), Positives = 150/380 (39%), Gaps = 76/380 (20%)
Query: 35 ITNELTGLPSWLKF----FDTQSPDEDFV-IPSLASW-------VESLKLNEQSRISSHA 82
+ N++ LP KF T+ DE F+ I + W +E LKL R+
Sbjct: 41 MNNKMQNLPMNRKFSGKDTSTRKLDERFIRILKIFKWGPDAEKALEVLKLKVDHRLVHEV 100
Query: 83 LSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGK 142
L D E +V K F WA + + H ++ A++ +L +
Sbjct: 101 LKIDVEINV---------------------KIQFFKWAGKRRNFEHDSSSFMALIHSLDE 139
Query: 143 SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD-----TRAMSVL------------- 184
+ +G MW+ ++++ S +S +S +++ L +A+SV
Sbjct: 140 AGFYGEMWKTIQDMVRSSTCVISSVYLSEIVKLLGKAKMVNKALSVFYQIKGRKCKPAAT 199
Query: 185 ----MDTLVKRNS----VAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
M ++K+ V Y +C + + LI + K D A +
Sbjct: 200 TYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFP-DTVTYSALISAFGKLGHYDSAIRLFD 258
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM ++G P YT + Y + K +KEM++KGC +V T T + L KA
Sbjct: 259 EMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTYTEWIKGLGKAG 318
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
++ +A +V+ M D C D +SLI IL K R + LKL
Sbjct: 319 RVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEV----------------TLKLF 362
Query: 357 QKIEEDSCKPDCETHARSLK 376
+K+E CKP+ T+ +K
Sbjct: 363 RKMESWQCKPNVVTYNTVIK 382
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 97/219 (44%), Gaps = 16/219 (7%)
Query: 118 TWAKTQTGYMHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR 175
+W + G P TY+ +++ K+ + L++E+DE G+ A
Sbjct: 396 SWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDE--KGFPPCPA------- 446
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
A L+++L K A ++FL+ K +C S++++ V+I + K + A
Sbjct: 447 ----AYCSLINSLGKVKRYEAANELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAVDL 502
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
EM + G PD +Y + R + L+ M E GC P + + I+++ L +
Sbjct: 503 FNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLAR 562
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
A++++ KMKS D Y++++ LS A F
Sbjct: 563 TGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLF 601
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 132/340 (38%), Gaps = 60/340 (17%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR----RLDT--RAMSVL- 184
TY+A++ A GK + L E+ E NG A + T + +LD +A+ V+
Sbjct: 236 TYSALISAFGKLGHYDSAIRLFDEMKE--NGLYPTAKIYTTLLGIYFKLDKVEKALDVIK 293
Query: 185 -----------------MDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTR 226
+ L K V AY+VFL KD + + LI+ K
Sbjct: 294 EMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVG 353
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY--CREKDFRKVDYTLKEMQEKGCKPSVIT 284
+ + K ++M P+ V+Y I+ C+ + ++M+ G PS T
Sbjct: 354 RLEVTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASW-FEKMKGCGIAPSSFT 412
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------- 333
+I++ K +I +AL + E+M + Y SLI L K R+
Sbjct: 413 YSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELK 472
Query: 334 --------LIYNTMIS--SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+Y MI C R E A+ L ++E+ KPD + +
Sbjct: 473 ENCGHSSARVYAVMIKHFGKCGRLSE--AVDLFNEMEKLGSKPDVYAYNALM-----SGM 525
Query: 384 MKDGML--VLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
++ GM+ +L+R M G P ++H ++ L + +
Sbjct: 526 VRAGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLARTGV 565
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 79/199 (39%), Gaps = 25/199 (12%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE----------------------LS 160
+ G+ P Y +++ +LGK K++ EL E+ E LS
Sbjct: 438 EKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHSSARVYAVMIKHFGKCGRLS 497
Query: 161 NGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVL 218
M + + D A + LM +V+ + A + L+ D S + +++
Sbjct: 498 EAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEA-QSLLRTMDENGCSPDLNSHNII 556
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
++G +T D A + +M PD VSY + F + ++EM KG
Sbjct: 557 LNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKLMREMNLKGF 616
Query: 279 KPSVITCTIVMHALEKAKQ 297
+ + IT T ++ A+ K +
Sbjct: 617 EYNNITYTSILEAVGKVDE 635
>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 735
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 20/218 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ LI G+CK K D A + M+ HG +PD ++Y + C+ V T K +
Sbjct: 436 FNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIM 495
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
EKGC P++IT I++ +L KA+++ EAL + E++++ + D +
Sbjct: 496 EKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDP----------------V 539
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+ T+IS C + A +L +++E+ C T A M D + L
Sbjct: 540 SFGTVISGFCNNGDLDEAYQLFRRMEQQY--RICHTVATYNIMINAFSEKLDMDMAQKLF 597
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
EM KG P T++++ + K +GN D LL
Sbjct: 598 HEMGDKGCDPDSYTYRVMIDGFCK--VGNVNSGYDFLL 633
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 22/221 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I+G+ K K A + +K+ GF PD +Y I C++ D +E
Sbjct: 296 YNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEAL 355
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
KG KPS++ ++ L + + +AL++ M + D Y+ +I
Sbjct: 356 GKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVS 415
Query: 325 ---FILSKAVR------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+L+ A+ +NT+I C R + NA+ + + PD T+ L
Sbjct: 416 DANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSIL 475
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C + +D V+ + ++ KG +P T+ +L E L
Sbjct: 476 NGLCKAAKPED---VMETFKMIMEKGCLPNIITYNILIESL 513
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 131/307 (42%), Gaps = 45/307 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F K + G+ HT TY M+E LG +F M ++ E+ L ++++ +
Sbjct: 27 FNSVKKEDGFKHTFLTYKRMIEKLGFHGEFDAMERVLMEM--------RLNVDNSLLEGV 78
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDC---ISLSSQIFDVLI-HGWCKTRKSDY 230
AM ++ V A VF + F +C I + I ++L+ +G+ +
Sbjct: 79 YVSAMR----NYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGY-----FNQ 129
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK-PSVITCTIVM 289
A K M G +PD ++T I+ +CR K L M +GC+ +V+ CT++
Sbjct: 130 AHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVIS 189
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE 349
E+ Q+ EA +++ KM + ++ L+ IL K +E
Sbjct: 190 GFYEENYQV-EAYELFNKMLRLGIFPHIATFNKLMHILCKKGHL--------------QE 234
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG----MLVLNLMREMLSKGIVPQ 405
G KL K+ ++ P+ T ++ C K ++ + N + +M++KG+ P
Sbjct: 235 GE--KLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPD 292
Query: 406 ESTHKML 412
+ T+ +
Sbjct: 293 DFTYNTI 299
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 105/265 (39%), Gaps = 34/265 (12%)
Query: 184 LMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCK-------TRKSDYAQKAM 235
LM L K+ + K+ K K+ + + F++ I G C+ K A+ +
Sbjct: 222 LMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYL 281
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT-CTIVMHALEK 294
+M G PD +Y I Y + + LK+ + KG P T C++++ +
Sbjct: 282 HKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQD 341
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR--FLIYNTMISSACVRSEEGNA 352
I AL ++E+ L K ++ ++YNT+I + A
Sbjct: 342 G-DIDHALALFEEA------------------LGKGLKPSIVLYNTLIKGLSQQGLVLKA 382
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
L+L + ++ PD T+ + C + D NL+ ++KG +P T L
Sbjct: 383 LQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDAN---NLLNAAIAKGYLPDIFTFNTL 439
Query: 413 AEELEKK-SLGNAKERIDELLTHAT 436
+ K+ + NA +D + +H
Sbjct: 440 IDGYCKRLKMDNAIGILDSMWSHGV 464
>gi|259490380|ref|NP_001159198.1| uncharacterized protein LOC100304284 [Zea mays]
gi|223942589|gb|ACN25378.1| unknown [Zea mays]
gi|414865313|tpg|DAA43870.1| TPA: hypothetical protein ZEAMMB73_208601 [Zea mays]
Length = 519
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 143/320 (44%), Gaps = 49/320 (15%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI-----DELSN-------GYVS----- 165
+ G +P + + LG++++F MW LV D L+ G V+
Sbjct: 102 RGGIAPSPYAIDTALYVLGRARRFPHMWNLVANTRRICPDALTPRTAMIVLGRVAKVCSV 161
Query: 166 ---LAAMSTVMRRLDTRAMSVLMD----TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVL 218
+A+ + R T +VL + TL + S++ A VF K ++ F++L
Sbjct: 162 RETVASFRCLARLFHTVDPAVLFNALLRTLCQEKSMSDARNVFHALKYEFRVNRHTFNIL 221
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
+ GW + ++ A+ + EM + G PD V+Y I+ +C+ +D +K L EM+ K
Sbjct: 222 LSGW---KSAEDAEAFVTEMRELGVEPDLVTYNSLIDCHCKNRDVQKAYKLLDEMRHKDI 278
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--FILSKAV--RFL 334
P +IT T ++ L Q +A + ++M C D Y++ I F+++K + F
Sbjct: 279 SPDIITYTSLIGGLGLIGQPDKAKDLLKEMYELGCYPDVPAYNAAIRNFVIAKRLGDAFA 338
Query: 335 IYNTMISSACVRS---------------EEGNALKLRQKIEEDSCKPDCETHARSLKMCC 379
+ + M+S + + + G+A +L +++ + C P+ ++ +++C
Sbjct: 339 LMDQMVSKGLMPNPTTYNLFFRCYYWAFDIGSAWRLYERMRSEGCYPNTQSCMFIIRLC- 397
Query: 380 HKKRMKDGMLVLNLMREMLS 399
R L L L +M+S
Sbjct: 398 --HRYGKVALALELWSDMVS 415
>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
Length = 544
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 141/328 (42%), Gaps = 46/328 (14%)
Query: 74 EQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETY 133
E + L +E +V S I+ Y DKV EA + F ++ + T+
Sbjct: 226 EAQSLMKEILKAGYEPNVFTYS-IIINCYCKLDKVEEAWEVF---MKMIESNCVPNAVTF 281
Query: 134 NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLV---- 189
N ++ K+ G++ + +K E M ++ +A V +TL+
Sbjct: 282 NTLIAGFCKA---GMLEDAIKLFAE--------------MEKIGCKATIVTYNTLIDSLC 324
Query: 190 -KRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
KR V A +F K + L+ I ++ LI G+C R+ A + EM + +P+
Sbjct: 325 KKRGGVYTAVDLFNKLEGA-GLTPTIVTYNSLIQGFCDARRLSEAMQYFDEM-EGKCAPN 382
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
++Y+ I+ C+ + ++ TL++M+ G P+V+T +++ K ++ AL +E
Sbjct: 383 VITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFE 442
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
KMK C +T +I+NT+I C + L+L + + CKP
Sbjct: 443 KMKLAGCAPNT----------------VIFNTLIDGLCKAERANDGLRLLCHMHAEGCKP 486
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLM 394
D T+ + C R++D + + M
Sbjct: 487 DVITYNCLISGLCSANRVEDAQRLFDGM 514
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 126/293 (43%), Gaps = 29/293 (9%)
Query: 147 GLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD 206
GL WE K + L M D + +L+ L +A A+ +F
Sbjct: 146 GLCWE-NKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALF----S 200
Query: 207 CISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
++ S I ++VL+ G+CK ++ AQ MKE+ + G+ P+ +Y+ I YC+
Sbjct: 201 AMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVE 260
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ +M E C P+ +T ++ KA + +A+K++ +M+ C
Sbjct: 261 EAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGC----------- 309
Query: 325 FILSKAVRFLIYNTMISSAC-VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
KA + YNT+I S C R A+ L K+E P T+ ++ C +R
Sbjct: 310 ----KAT-IVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARR 364
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDELLTHA 435
+ + M + EM K P T+ +L + L K + + A + ++++ H
Sbjct: 365 LSEAMQYFD---EMEGK-CAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHG 413
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 121/270 (44%), Gaps = 31/270 (11%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G T TYN ++++L KK G ++ V ++L A ++ + ++
Sbjct: 306 KIGCKATIVTYNTLIDSL--CKKRGGVYTAVDLFNKLEG-----AGLTPTIVTYNS---- 354
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ ++ A + F + + + + + +LI G CK R+ A K +++M HG
Sbjct: 355 -LIQGFCDARRLSEAMQYFDEMEGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHG 413
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
++P V+Y I +C+ + + ++M+ GC P+ + ++ L KA++ + L
Sbjct: 414 YTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGL 473
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362
++ M ++ C D + YN +IS C + +A +L +
Sbjct: 474 RLLCHMHAEGCKPDV----------------ITYNCLISGLCSANRVEDAQRLFDGM--- 514
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
+C P+ T ++ C +K++++ +L+
Sbjct: 515 ACAPNVTTFNFLIRGLCAQKKVEEARNILD 544
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 86/202 (42%), Gaps = 23/202 (11%)
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+ L+ G RK D A + KE+ F+P+ +Y I +C+ + +M+
Sbjct: 1 NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--FILSKAVRF 333
G P+ T ++ L + Q+ ALK++ +M++ L ++ ++ L+ F ++ VR
Sbjct: 61 SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120
Query: 334 LI-----------------YNTMISSACVRSEEGN----ALKLRQKIEEDSCKPDCETHA 372
+ YN ++ C ++ N A++ ++++ +PD E++
Sbjct: 121 ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYH 180
Query: 373 RSLKMCCHKKRMKDGMLVLNLM 394
L RM + + + M
Sbjct: 181 ILLSALSDSGRMAEAHALFSAM 202
>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
Length = 684
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 124/293 (42%), Gaps = 33/293 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G M TYN +++ + EL+ E+ L S D + +
Sbjct: 183 GIMPNVVTYNCLIKGYCDLHRVEDAMELISEM--------PLKGCSP-----DKVSYYTV 229
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
M L K + V K +D L+ Q+ ++ LIH CK + +D A + ++E + GF
Sbjct: 230 MGFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGF 289
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
D V Y+ ++ YC+E + + EM +GC P V+T T +++ +A ++ +A K
Sbjct: 290 QVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARK 349
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS 363
+ ++M C +T Y++ + C + A ++ + EE
Sbjct: 350 MLQQMYKHGCKPNTVSYTAF----------------LKGLCQKGNSSEAREMMKASEEQW 393
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
P+ T++ + + ++ D +++REM+ KG P +L + L
Sbjct: 394 WTPNAITYSVVMHGFRREGKLSDA---CDVVREMIGKGFFPTPVEINLLLQSL 443
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 118/308 (38%), Gaps = 44/308 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSK----------------------KFGLMWELVK 154
F W+ Q Y H P Y M++ L K+K F +
Sbjct: 70 FFWSDRQWRYRHDPIVYCVMLDVLSKTKLCQGARRVLRLMVRRGIQRTPQDFCCVMVSYS 129
Query: 155 EIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
+L N L M + + + LV N + A + FL+ + + +
Sbjct: 130 RAGKLRNAMQVLTMMQKAGIEPNLLVCNTAIHVLVMANMLEKALR-FLERMQLLGIMPNV 188
Query: 215 --FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
++ LI G+C + + A + + EM G SPD VSY + C+ + R+V +++
Sbjct: 189 VTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEK 248
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M++ +T ++H L K + EAL+ + + D YS+++ K R
Sbjct: 249 MEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGR 308
Query: 333 F----LIYNTMISSACV---------------RSEEGNALKLRQKIEEDSCKPDCETHAR 373
I N M + C+ E G A K+ Q++ + CKP+ ++
Sbjct: 309 MDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTA 368
Query: 374 SLKMCCHK 381
LK C K
Sbjct: 369 FLKGLCQK 376
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/302 (20%), Positives = 125/302 (41%), Gaps = 36/302 (11%)
Query: 110 EALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAM 169
EAL+ F + G+ Y+A+V++ K + E+V E+ + G +
Sbjct: 276 EALQ---FLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEM--FTRGCIP---- 326
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKS 228
D + +++ + V A K+ + +K ++ + + G C+ S
Sbjct: 327 -------DVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNS 379
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
A++ MK + ++P+ ++Y+ + + RE ++EM KG P+ + ++
Sbjct: 380 SEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLL 439
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
+ +L + ++ EA K E +CL + AV + + T+I C + +
Sbjct: 440 LQSLCRIGRVDEAKKFME-----ECLN-----------MGCAVNAVNFTTVIHRFCQQDD 483
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
AL L + + PD T+ + K R+++ L +ML KGI P T
Sbjct: 484 IEAALSLLDDMYLSNKHPDAVTYTTIIDALGKKGRIEEAT---ELTLKMLKKGIDPTPVT 540
Query: 409 HK 410
++
Sbjct: 541 YR 542
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 80/183 (43%), Gaps = 16/183 (8%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ V++ KT+ A++ ++ M + G + C + Y R R L M
Sbjct: 85 VYCVMLDVLSKTKLCQGARRVLRLMVRRGIQRTPQDFCCVMVSYSRAGKLRNAMQVLTMM 144
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
Q+ G +P+++ C +H L A + +AL+ E+M+ L+ I+ V
Sbjct: 145 QKAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQ-------------LLGIMPNVV-- 189
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
YN +I C +A++L ++ C PD ++ + C +R+++ M V+
Sbjct: 190 -TYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEK 248
Query: 394 MRE 396
M +
Sbjct: 249 MED 251
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 63/132 (47%), Gaps = 7/132 (5%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI----FDVLIHGWCKTRKSDYAQKAMK 236
+++L+ +L + V A K ++C+++ + F +IH +C+ + A +
Sbjct: 436 INLLLQSLCRIGRVDEAKKFM---EECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLD 492
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
+M+ PD V+YT I+ ++ + +M +KG P+ +T V+H +
Sbjct: 493 DMYLSNKHPDAVTYTTIIDALGKKGRIEEATELTLKMLKKGIDPTPVTYRTVIHRYGQIG 552
Query: 297 QIYEALKVYEKM 308
++ + L + +KM
Sbjct: 553 RVEDLLNLLDKM 564
>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
Length = 481
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 131/304 (43%), Gaps = 64/304 (21%)
Query: 145 KFGLMWELVKEIDE-LSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK 203
K G M + K DE L+ G V+ +A V+ + L+ V L+
Sbjct: 195 KIGRMEDAAKVFDEMLTQGEVAPSA--------------VMYNALIGGYCDRGKLDVALQ 240
Query: 204 FKD-----CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258
+++ ++++ +++L+H ++ A ++EM ++G SPD +Y I YC
Sbjct: 241 YREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYC 300
Query: 259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318
+E + +K +EM KG + + +T T +++A + Q+ E ++++
Sbjct: 301 KEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFK------------ 348
Query: 319 FYSSLIFILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+ K +R ++YN +I+S C + A ++ ++E+ PD T+ ++
Sbjct: 349 ------VAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLIR 402
Query: 377 MCCHKKRMKDGMLVL------------------------NLMREMLSKGIVPQESTHKML 412
C R+ + ++ NLM+EM+ KGI P +ST+ L
Sbjct: 403 GFCLLGRLDEARGLIDEMTKRGIQPDLGLCKNGQGDDAENLMKEMVGKGITPDDSTYISL 462
Query: 413 AEEL 416
E L
Sbjct: 463 IEGL 466
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 29/234 (12%)
Query: 195 AHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A A+ +F ++ + L + F++++ C T K A + +++M + P+ V+Y
Sbjct: 98 APAFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELLRQMPR----PNAVTYNTV 153
Query: 254 IEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I +C + ++EM+E+ G P T ++ K ++ +A KV+++M
Sbjct: 154 IAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEM---- 209
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
LT S + +YN +I C R + AL+ R+ + + T+
Sbjct: 210 -LTQGEVAPSAV----------MYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYN 258
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA-----EELEKKSL 421
+ R D VL EM G+ P T+ +L E EKK+L
Sbjct: 259 LLVHALFMDGRASDAYAVLE---EMQRNGLSPDVFTYNILINGYCKEGNEKKAL 309
>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
Length = 347
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 118/262 (45%), Gaps = 21/262 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++L+ L +R V A +V + K + +S ++ L+H +CK +K D A ++ M
Sbjct: 90 NMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFVELMVS 149
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD VSY + CR + L +++ KGC P +I+ V+ L KA + E
Sbjct: 150 RGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKE 209
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
AL++ ++M S D + Y T+ S C + A++ K++
Sbjct: 210 ALELLDEMISKGLQPD----------------IITYTTIASGLCREDKIEEAIRTFCKVQ 253
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ +P + L C ++ + ++L M+S G +P EST+ +L E L +
Sbjct: 254 DMGIRPTVVLYNAILLGLCKRRETHN---AIDLFSYMISNGCMPNESTYTILVEGLAYEG 310
Query: 421 L-GNAKERIDELLTHATEQRTF 441
L A++ + +L + + F
Sbjct: 311 LVKEARDLLGQLCSRGVVNKKF 332
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 105/221 (47%), Gaps = 22/221 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++V+++G C+ + D A + ++ + +G P+ VSY ++ + + + ++EM
Sbjct: 19 YNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFTAERWEDAEKLMEEMA 78
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------LS 328
KGC P+V+T +++ L + + A++V E++ C ++ Y+ L+ +
Sbjct: 79 HKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMD 138
Query: 329 KAVRF-------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
KA+ F + YNT++++ C E A+ L +++ C P ++ +
Sbjct: 139 KAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVI 198
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ K+ L L+ EM+SKG+ P T+ +A L
Sbjct: 199 DGLTKAGKTKE---ALELLDEMISKGLQPDIITYTTIASGL 236
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 19/184 (10%)
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
K + EM G +PD ++Y + C+E L+ + G +P+ ++ IV+ L
Sbjct: 2 KLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGL 61
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA 352
A++ +A K+ E+M C + + +N +IS C R A
Sbjct: 62 FTAERWEDAEKLMEEMAHKGCPPNV----------------VTFNMLISFLCRRGLVEPA 105
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+++ ++I + C P+ ++ L C +K+M M + L M+S+G P ++ L
Sbjct: 106 MEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFVEL---MVSRGCYPDIVSYNTL 162
Query: 413 AEEL 416
L
Sbjct: 163 LTAL 166
>gi|115447913|ref|NP_001047736.1| Os02g0679200 [Oryza sativa Japonica Group]
gi|50253128|dbj|BAD29374.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537267|dbj|BAF09650.1| Os02g0679200 [Oryza sativa Japonica Group]
Length = 491
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+D L K A + + + ++ L GWC+ + + A ++ M + G
Sbjct: 171 LLDALSKSRHAGKAASLVRALEQRFTPDVVTYNTLADGWCRVKDTSRALDVLRLMVESGI 230
Query: 244 SPDGVSYTCFIEHYCREKDFRKV-DYTLKEMQEKG-----CKPSVITCTIVMHALEKAKQ 297
+P +Y ++ + R R D+ L +M+++G CKP V++ T ++H L A Q
Sbjct: 231 APTKTTYNIILKGFFRAGQLRHAWDFFL-QMKKRGSKDESCKPDVVSYTTMVHGLGVAGQ 289
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIYNT 338
+ +A KV+++M + C + Y++LI ++ K + Y
Sbjct: 290 LEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMRVKGYVPNVVTYTV 349
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+I C + LKL ++++ C+P +T+ ++ + M+ G+ + E +
Sbjct: 350 LIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLF----EKM 405
Query: 399 SKG--IVPQESTHKML 412
SKG +P + T+ ++
Sbjct: 406 SKGEECLPNQDTYNII 421
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 137/313 (43%), Gaps = 66/313 (21%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDE-----------LSNGYVSLAAMSTVMRRLDT-RA 180
+N++++AL KS+ G LV+ +++ L++G+ + S R LD R
Sbjct: 168 FNSLLDALSKSRHAGKAASLVRALEQRFTPDVVTYNTLADGWCRVKDTS---RALDVLRL 224
Query: 181 M------------SVLMDTLVKRNSVAHAYKVFLKFK-----------DCISLSSQIFDV 217
M ++++ + + HA+ FL+ K D +S +
Sbjct: 225 MVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVS-----YTT 279
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
++HG + + A+K EM + G +P +Y I+ C++ + M+ KG
Sbjct: 280 MVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMRVKG 339
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337
P+V+T T+++ L A +I LK+ E+MK+ C Y+ LI R+L
Sbjct: 340 YVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLI-------RYLF-- 390
Query: 338 TMISSACVRSEEG---NALKLRQKIEE-DSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
EEG L L +K+ + + C P+ +T+ + +KR +D +L +
Sbjct: 391 ----------EEGEMEKGLDLFEKMSKGEECLPNQDTYNIIISAMFMRKRAEDMVLAARM 440
Query: 394 MREMLSKGIVPQE 406
+ EM+ +G +P+
Sbjct: 441 VEEMVDRGYLPRR 453
>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 966
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 95/196 (48%), Gaps = 11/196 (5%)
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
C+ ++ D A +EM + G +PD +YT I+ +C+ + EM+ GC P+V
Sbjct: 463 CQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNV 522
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL----IYNT 338
+T T ++HA K+KQ+Y+A ++ +M D C + YS+LI L KA +Y
Sbjct: 523 VTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAK 582
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+I + S+ + + + D+ P+ T+ + C +++ D +L+ ML
Sbjct: 583 LIGT----SDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAH---DLLDAML 635
Query: 399 SKGIVPQESTHKMLAE 414
+ G P + + L +
Sbjct: 636 AAGCEPNQIVYDALVD 651
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 14/194 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY A+V L K++K +S+ + L AM + L+D K
Sbjct: 610 TYGALVNGLCKAQK-------------VSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKV 656
Query: 192 NSVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A +VFL+ C L S + LI K + D A K + +M + +P+ V+Y
Sbjct: 657 GEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTY 716
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T ++ C+ + K L M++KGC P+V+T T ++ L KA ++ L+++ +MK+
Sbjct: 717 TAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKT 776
Query: 311 DDCLTDTSFYSSLI 324
C + Y LI
Sbjct: 777 KGCAPNYVTYRILI 790
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/356 (22%), Positives = 131/356 (36%), Gaps = 84/356 (23%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA+ Q GY HT Y+A+ E LG L++EI E
Sbjct: 121 FLWAERQVGYKHTGACYDALAEVLGFEDPARTAERLLREIGED----------------- 163
Query: 177 DTRAMSVLMDTLVKRNSV----AHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYA 231
D + L++ LV+R + A + + KD S + ++ L+ + + A
Sbjct: 164 DRDVLGRLLNVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMA 223
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCRE------------KDFRKVDYTLKEMQEKG-- 277
+ KEM GF D + F + C+E +DF K+D L G
Sbjct: 224 FRVQKEMSASGFCMDRSTVGSFAQALCKEGRWGDALDLLEREDF-KLDTVLCTQMISGLM 282
Query: 278 ----------------CK---PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318
C P+V+T ++ K KQ+ ++ M ++ C S
Sbjct: 283 EASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPS 342
Query: 319 FYSSLIFILSKA-------------------VRFLIYNTMISSACVRSEEGNA--LKLRQ 357
++SL+ A +++YN I S C R E N L L +
Sbjct: 343 LFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAE 402
Query: 358 KIEED----SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
K+ E+ SC + A + C + + +++EM+ KG VP ST+
Sbjct: 403 KVYEEMLVASCVLNKINTANFARCLCGVGKFEK---AFQIVKEMMRKGFVPDASTY 455
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 99/226 (43%), Gaps = 18/226 (7%)
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF 204
KF +++VKE+ + G+V D + ++ L + V A+ +F +
Sbjct: 432 KFEKAFQIVKEM--MRKGFVP-----------DASTYTKVITFLCQAKRVDKAFLLFQEM 478
Query: 205 KDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263
K ++ + +LI +CK + AQ EM G SP+ V+YT + Y + K
Sbjct: 479 KKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQL 538
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM--KSDDCLTDTSFYS 321
+ + M C P+ IT + ++ L KA +I +A +VY K+ SD+ +D F
Sbjct: 539 YQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEG 598
Query: 322 SLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
+S V + Y +++ C + +A L + C+P+
Sbjct: 599 KDTDTISPNV--VTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPN 642
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 109/254 (42%), Gaps = 24/254 (9%)
Query: 132 TYNAMVEALGKS----KKFGLMWELVKEIDEL-SNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TY+A+++ L K+ K + +L+ D + S+ Y T+ + T L++
Sbjct: 559 TYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVT--YGALVN 616
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L K V+ A+ + +QI +D L+ G+CK + D AQ+ M + G+ P
Sbjct: 617 GLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLP 676
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
+YT I+ ++ L +M + C P+V+T T ++ L K + +AL +
Sbjct: 677 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLL 736
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
M+ C + Y++LI L KA + L+L +++ C
Sbjct: 737 SLMEKKGCSPNVVTYTALIDGLGKA----------------GKVDAGLELFMQMKTKGCA 780
Query: 366 PDCETHARSLKMCC 379
P+ T+ + CC
Sbjct: 781 PNYVTYRILINHCC 794
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 7/154 (4%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKS------DYAQKAMK 236
L+ T A+AYK+F + C ++++ I C + D A+K +
Sbjct: 347 LVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYE 406
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM + ++ F C F K +KEM KG P T T V+ L +AK
Sbjct: 407 EMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAK 466
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
++ +A ++++MK D Y+ LI KA
Sbjct: 467 RVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKA 500
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 101/228 (44%), Gaps = 25/228 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++LI G+CKT + + A + EM P+ +SY + YC + EM
Sbjct: 468 YNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMI 527
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
KG KP+++TC V+ ++ + +A + KM S+ D+ +
Sbjct: 528 RKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDS----------------I 571
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YNT+I+ A L K+E +PD T+ L C + RM++ L+L
Sbjct: 572 TYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELIL--- 628
Query: 395 REMLSKGIVPQESTHKMLAEE-LEKKSLGNAKERIDELLTHATEQRTF 441
R+M+ +GI P ST+ L + + +L A DE+L QR F
Sbjct: 629 RKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEML-----QRGF 671
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 118/300 (39%), Gaps = 62/300 (20%)
Query: 172 VMRR----LDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTR 226
++RR + A + L+ LVK V A++V+ + + I L+ +++++ CK
Sbjct: 140 ILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDH 199
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
K D + + +M Q G D V+Y I YCRE + + M KG KP++ T
Sbjct: 200 KIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYN 259
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL----IYNTMI-- 340
V++ L K + A V+ +M S DT+ Y++L+ + FL I++ M+
Sbjct: 260 AVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHR 319
Query: 341 ----------SSACVRSEEGN--------------------------------------A 352
S V S G+ A
Sbjct: 320 GVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEA 379
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
L++R K+ E C D + L C KK + D L EM+ +G+VP T L
Sbjct: 380 LEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANA---LFDEMVERGVVPDFCTFTTL 436
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 111/296 (37%), Gaps = 43/296 (14%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G T TYNA++ L K ++ + E M ++ DT + L
Sbjct: 250 GLKPTLFTYNAVINGLCKKGRYVRAKGVFNE-------------MLSIGLSPDTTTYNTL 296
Query: 185 MDTLVKRNSVAHAYKVFLKF------KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
+ + N+ A +F D IS SS LI + D A ++M
Sbjct: 297 LVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSS-----LIGVSSRNGHLDQALMYFRDM 351
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
G PD V YT I YCR + +M E+GC V+ +++ L K K +
Sbjct: 352 KTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLL 411
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK 358
+A ++++M + D F + T+I C G AL L
Sbjct: 412 ADANALFDEMVERGVVPD----------------FCTFTTLIHGHCKEGNMGKALSLFGI 455
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ + + KPD T+ + C M+ + N EM+S+ I P ++ +L
Sbjct: 456 MTQKNIKPDIVTYNILIDGFCKTTEMEKANELWN---EMISRKIFPNHISYAILVN 508
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 23/211 (10%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMSTVMRRLDTR 179
TYN +++ K+ + EL E+ L NGY +L +S R D
Sbjct: 467 TYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEM 526
Query: 180 AMSVLMDTLVKRNSVAHAY---------KVFLK--FKDCISLSSQIFDVLIHGWCKTRKS 228
+ TLV N+V Y FL + + S ++ LI+G+ K
Sbjct: 527 IRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYM 586
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A + +M G PD V+Y + +CR+ ++ + L++M E+G P T T +
Sbjct: 587 DKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTL 646
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSF 319
++ + EA + +++M + D F
Sbjct: 647 INGYVSQDNLKEAFRFHDEMLQRGFVPDDDF 677
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 93/247 (37%), Gaps = 26/247 (10%)
Query: 195 AHAYKVFLKFKDC----ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
H + + F+D + + I+ +LI+G+C+ A + +M + G + D V+Y
Sbjct: 339 GHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAY 398
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ C++K + EM E+G P T T ++H K + +AL ++ M
Sbjct: 399 NTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQ 458
Query: 311 DDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGN 351
+ D Y+ LI K + Y +++ C
Sbjct: 459 KNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSE 518
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A +L ++ KP T +K C R D + +M+S+G+ P T+
Sbjct: 519 AFRLWDEMIRKGIKPTLVTCNTVIKGYC---RSGDLSKADEFLGKMISEGVGPDSITYNT 575
Query: 412 LAEELEK 418
L K
Sbjct: 576 LINGFVK 582
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 104/266 (39%), Gaps = 25/266 (9%)
Query: 173 MRRLDTRAMS---VLMDTLVKRNSVAHAYKV--FLKFKDCISLSSQIFDVLIHGWCKTRK 227
+RR+ ++ +S L+ +++R+ V+ V + + + +FD+LI + + RK
Sbjct: 71 LRRVRSKRLSDAQTLILRMIRRSGVSRVEIVESLISMSSTCGVDNLVFDLLIRSYVQARK 130
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
+ K + + GF + + + E+ G + +V T I
Sbjct: 131 LNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNI 190
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRS 347
+++AL K +I + M+ D + YNT+I++ C
Sbjct: 191 MVNALCKDHKIDDVKPFLIDMEQKGIFAD----------------IVTYNTLINAYCREG 234
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
G A ++ + KP T+ + C K R V N EMLS G+ P +
Sbjct: 235 LLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFN---EMLSIGLSPDTT 291
Query: 408 THK-MLAEELEKKSLGNAKERIDELL 432
T+ +L E + AK+ ++L
Sbjct: 292 TYNTLLVESCRNNNFLEAKDIFSDML 317
>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
Length = 991
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/340 (20%), Positives = 145/340 (42%), Gaps = 33/340 (9%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
V+++ R +P+ A F W + G+ HT +++ A++ L + + LV
Sbjct: 57 VADLFRAESTAPEP---ATALAFFEWLARRDGFRHTADSHAALLHLLSRRRAPAQYERLV 113
Query: 154 KEI----DELSNGYVSLAAMSTVMRR------LDTRAMSVLMDTLVKRNSVAHAYKVFLK 203
+ D + VS A+ + R L + + + +L + + + +V+ +
Sbjct: 114 VSMLNCSDTAEDMRVSADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQ 173
Query: 204 F-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
+D + + ++ +I +CK A + + + + G P+ + + YCR +
Sbjct: 174 LVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGE 233
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
RK + M GC+ + + TI++ L +AK + EAL ++ MK D C + ++
Sbjct: 234 LRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTF 293
Query: 323 LIFILSKAVR-------------------FLIYNTMISSACVRSEEGNALKLRQKIEEDS 363
LI L K+ R + YN MI +ALK+++ +E++
Sbjct: 294 LISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNG 353
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C PD T+ + C +K + L+ N ++E + +V
Sbjct: 354 CHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVV 393
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 133/335 (39%), Gaps = 69/335 (20%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ +GL + +E +EL N V TV V L+
Sbjct: 360 TYNTLI--------YGLCDQKTEEAEELLNNAVKEGFTPTV----------VTFTNLING 401
Query: 192 NSVAHAYKVFLKFKDCI-----SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
+A + L+ K+ + L Q+F LI+ K + A++ + E+ +G P+
Sbjct: 402 YCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPN 461
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
++YT I+ YC+ LK M+ GC+P+ T +M+ L K K++++A+ +
Sbjct: 462 VITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLT 521
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
KM+ D + + + Y T++ C + NA +L + +E++ KP
Sbjct: 522 KMQKDGIIPNV----------------ITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKP 565
Query: 367 DCETHARSLKMCCHKKR----------------------MKDGM-------LVLNLMREM 397
D +A C R + DG L+ M
Sbjct: 566 DEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERM 625
Query: 398 LSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
+ +G P T+ +L L ++K L A +D++
Sbjct: 626 IDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQM 660
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 96/213 (45%), Gaps = 21/213 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +LI G C+ + A M + G SP+ ++T I C+ M
Sbjct: 256 YTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMP 315
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF--------- 325
+ G PSV+T ++ K ++ +ALK+ E M+ + C D Y++LI+
Sbjct: 316 QNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEE 375
Query: 326 ---ILSKAVR------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+L+ AV+ + + +I+ C+ + +AL+++ K+ CK D + + +
Sbjct: 376 AEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLIN 435
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
K R+K+ +LN E+ + G+VP T+
Sbjct: 436 SLIKKDRLKEAKELLN---EISANGLVPNVITY 465
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 113/258 (43%), Gaps = 24/258 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ RA + L+ L K V A +F ++ + S ++ +I G+ K + + A K
Sbjct: 287 NVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIK 346
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ M ++G PD +Y I C +K + + L ++G P+V+T T +++ A
Sbjct: 347 ELMEKNGCHPDDWTYNTLIYGLCDQKT-EEAEELLNNAVKEGFTPTVVTFTNLINGYCMA 405
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIY 336
++ +AL++ KM S C D + LI L K R + Y
Sbjct: 406 EKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITY 465
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
++I C + AL++ + +E D C+P+ T+ + K++ M +L M++
Sbjct: 466 TSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQK 525
Query: 397 MLSKGIVPQESTHKMLAE 414
GI+P T+ L +
Sbjct: 526 ---DGIIPNVITYTTLLQ 540
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 99/240 (41%), Gaps = 10/240 (4%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF----LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQ 232
D+ SVL+ L K+ + A + L+ C + + +LI + K D+A+
Sbjct: 633 DSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFA---YTILIDEMLREGKHDHAK 689
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ EM G P +YT FI YC+E + + +M+ +G P V+T I++
Sbjct: 690 RMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGC 749
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA 352
I A ++M C + Y L+ L K + + S E
Sbjct: 750 GHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDIT 809
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+L +++ + P T++ + C R+++ L+L+ M KG+ P E + +L
Sbjct: 810 WQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLD---HMCGKGLSPNEDIYTLL 866
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 102/249 (40%), Gaps = 21/249 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
D A +VL D L K AY ++ ++L+ + LI G+ K +D+A ++
Sbjct: 566 DEHAYAVLTDALCKAGRAEEAYSFIVR--KGVALTKVYYTTLIDGFSKAGNTDFAATLIE 623
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M G +PD +Y+ + C++K + L +M +G K ++ TI++ + +
Sbjct: 624 RMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREG 683
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
+ A ++Y +M S + Y+ I+S C +A L
Sbjct: 684 KHDHAKRMYNEMTSSGHKPSATTYT----------------VFINSYCKEGRLEDAEDLI 727
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
K+E + PD T+ + C H + + ++ M+ P T+ +L + L
Sbjct: 728 LKMEREGVAPDVVTYNILIDGCGHMGYIDRA---FSTLKRMVGASCEPNYWTYCLLLKHL 784
Query: 417 EKKSLGNAK 425
K +L +
Sbjct: 785 LKGNLAYVR 793
>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
Length = 668
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 115/273 (42%), Gaps = 26/273 (9%)
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ A++ L+ L VA A +FL+F I ++ ++ L+ G+ + A++ +
Sbjct: 263 SNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVL 322
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM Q G +PD +Y+ ++ Y R + LKEM+ G KPS + ++
Sbjct: 323 DEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDR 382
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIY 336
+A V +M++ D FY+ +I K + +
Sbjct: 383 GDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTW 442
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT+I + C A +L +++ E +C P T+ + + ++ + V ++ E
Sbjct: 443 NTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEG---VEAMLSE 499
Query: 397 MLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
M +G+VP T+ L + + G KE ID
Sbjct: 500 MKEQGLVPNIITYTTLVDVYGRS--GRYKEAID 530
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 113/276 (40%), Gaps = 23/276 (8%)
Query: 162 GYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIH 220
+ L M R D +V++DT K N + HA F K ++ I ++ LI
Sbjct: 388 AFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLID 447
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
CK + D A + +EM + P +Y I ++ + V+ L EM+E+G P
Sbjct: 448 AHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVP 507
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----------- 329
++IT T ++ ++ + EA+ E MK+D + Y +L+ ++
Sbjct: 508 NIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVV 567
Query: 330 --------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
V L+ N++I++ A + Q + E+ +PD T+ +K
Sbjct: 568 KAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRV 627
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
++ V + EM++ G P ML L+
Sbjct: 628 EQFDK---VPVIYEEMITSGCAPDRKARAMLRSGLK 660
>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 570
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 140/342 (40%), Gaps = 49/342 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN+++ + + ++++ I S GY D ++L+ L+ +
Sbjct: 233 TYNSIIRGMCREGYVDRAFQIISSIS--SKGYAP-----------DVITYNILLRGLLNQ 279
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
Y++ + + C + + VLI C+ K + +K+M + G PDG
Sbjct: 280 GKWEAGYELMSDMVARGC-EANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYC 338
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y I C+E L M GC P ++ ++ L K K+ EAL ++EK+
Sbjct: 339 YDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLG 398
Query: 310 SDDCLTDTSFYSS-----------------LIFILSKAV--RFLIYNTMISSACVRSEEG 350
C + S Y+S ++ +L K V + YN++IS C
Sbjct: 399 EVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVD 458
Query: 351 NALKLRQKIEEDS--CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
A++L +E +S CKP ++ L C R+ D + VL M+ KG P E+T
Sbjct: 459 EAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVL---AAMVDKGCRPNETT 515
Query: 409 HKMLAEEL-------EKKSLGNAKERIDELLTHATEQ--RTF 441
+ L E + + + L +D + H+ E+ +TF
Sbjct: 516 YTFLIEGIGFGGCLNDARDLATTLVNMDAISEHSFERLYKTF 557
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/415 (19%), Positives = 160/415 (38%), Gaps = 62/415 (14%)
Query: 46 LKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSP 105
L F DT ++ SL+ ++ NE H +++ H+ DV ++++ + S
Sbjct: 53 LDFKDTH------LLKSLSRSCKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSK 106
Query: 106 --DKVVEALKCFCFTWAKTQTGYMHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSN 161
DK ++ + + H P+ YNA++ ++ + +++ +D + N
Sbjct: 107 TIDKAIQVMHIL--------ENHGH-PDLIAYNAIITGFCRANRIDSAYQV---LDRMKN 154
Query: 162 GYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHA--YKVFLKFKDCISLSSQIFDVLI 219
S D ++L+ +L R + A +K L ++C + + +LI
Sbjct: 155 KGFSP----------DIVTYNILIGSLCSRGMLDSALEFKNQLLKENC-KPTVVTYTILI 203
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
D A K + EM + PD +Y I CRE + + + KG
Sbjct: 204 EATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYA 263
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRF 333
P VIT I++ L + ++ M + C + YS LI + + V
Sbjct: 264 PDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGL 323
Query: 334 L-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
L Y+ +I++ C A+++ + D C PD + L C
Sbjct: 324 LKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCK 383
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-----EKKSLGNAKERIDE 430
+KR + + + + E+ G P S++ + L + ++LG E +D+
Sbjct: 384 QKRADEALSIFEKLGEV---GCSPNASSYNSMFSALWSTGHKVRALGMILEMLDK 435
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 121/273 (44%), Gaps = 24/273 (8%)
Query: 85 EDHETDVDKVS-EILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKS 143
E + D VS +L Y ++VEA K + K M T TYN ++ L +
Sbjct: 370 ESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKE---IMPTVITYNTLLTGLFRE 426
Query: 144 KKFGLMWELVKE--IDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF 201
K W L E + +L+ ++ ++L+D L K N ++ A ++F
Sbjct: 427 GKVRDAWNLFGEMKVHDLTP---------------ESCTYNILLDGLCKNNHLSEAMELF 471
Query: 202 --LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR 259
L+ D S QIF+ LI G CK RK + A++ + G P+ ++YT I C+
Sbjct: 472 HYLENHD-FQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCK 530
Query: 260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF 319
M+EKGC P+++T +M + ++ + +++ ++M D D S
Sbjct: 531 SGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDAST 590
Query: 320 YSSLIFILSKAVRFLIYNTMISSACVRSEEGNA 352
S ++ +LSK ++ Y ++ + + + G
Sbjct: 591 ISIVVDLLSKDEKYREYLHLLPTFPAQGQTGRG 623
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 124/307 (40%), Gaps = 36/307 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T+N +++AL K+ K ++E + L L M DT + L+D
Sbjct: 310 TFNVLIDALCKAGK-------MEEANHL------LKLMIQRGESPDTFTYNTLIDGFCLE 356
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A +F+ + I + ++VLI+G+CK+ + A+K +EM P ++Y
Sbjct: 357 GRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITY 416
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ RE R EM+ P T I++ L K + EA++++ +++
Sbjct: 417 NTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLEN 476
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLI-------------------YNTMISSACVRSEEGN 351
D ++ LI L KA + I Y MI C + N
Sbjct: 477 HDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLEN 536
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A L +EE C P+ T ++ C M+ V+ L++EM K P ST +
Sbjct: 537 AKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQK---VVELLQEMAEKDFSPDASTISI 593
Query: 412 LAEELEK 418
+ + L K
Sbjct: 594 VVDLLSK 600
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 102/240 (42%), Gaps = 24/240 (10%)
Query: 192 NSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMKEMFQ 240
N++ A ++ D ISL ++ ++LI+ +C K D+ + EM +
Sbjct: 96 NTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLR 155
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G SP+ V++T ++ C + L++M G +P+V+T +++ L
Sbjct: 156 RGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTML 215
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A+K++E+M + + + +L+ Y T+I S C +L +++
Sbjct: 216 AVKLHEEMLNGNGGFGVTIKPNLV----------CYCTIIDSLCKDGLIDKGKELFLEMK 265
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
PD ++ + CH R + + N EM+ +G+ P T +L + L K
Sbjct: 266 GRGISPDVVAYSSIIHGMCHTGRWEGAKGLFN---EMVDEGVHPNVVTFNVLIDALCKAG 322
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 125/315 (39%), Gaps = 28/315 (8%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+ GY TY ++ L + L +L +E+ + G+ V + +
Sbjct: 189 VRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGF-------GVTIKPNLVCY 241
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++D+L K + ++FL+ K IS + +IHG C T + + A+ EM
Sbjct: 242 CTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVD 301
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ V++ I+ C+ + ++ LK M ++G P T ++ +I +
Sbjct: 302 EGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDD 361
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A ++ M+S TD + YN +I+ C A KL +++
Sbjct: 362 ARDLFVSMESKGIETDA----------------VSYNVLINGYCKSGRMVEAKKLYREMM 405
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
P T+ L + +++D NL EM + P+ T+ +L + L K +
Sbjct: 406 CKEIMPTVITYNTLLTGLFREGKVRD---AWNLFGEMKVHDLTPESCTYNILLDGLCKNN 462
Query: 421 -LGNAKERIDELLTH 434
L A E L H
Sbjct: 463 HLSEAMELFHYLENH 477
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 23/232 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+VLI CK K + A +K M Q G SPD +Y I+ +C E M+
Sbjct: 311 FNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSME 370
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
KG + ++ ++++ K+ ++ EA K+Y +M + + Y++L+ L + +
Sbjct: 371 SKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVR 430
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
YN ++ C + A++L +E +P + +
Sbjct: 431 DAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLI 490
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKE 426
C ++++ + L + +G+ P T+ ++ L K L NAK+
Sbjct: 491 DGLCKARKIE---IARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKD 539
>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
Length = 1153
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 89/382 (23%), Positives = 155/382 (40%), Gaps = 51/382 (13%)
Query: 76 SRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNA 135
+R+ + T + V +LR P P + +E FT A Q +HT E+ N
Sbjct: 60 ARVHERRRAAGAGTGTESVVHMLRSA-PGPAEALE-----LFTAAARQPTAVHTTESCNY 113
Query: 136 MVEALGKSKKFGLMWELV----KEI------------------DELSNGYVSLAAMSTVM 173
M+E + + G M ++ K+I L + V+L M
Sbjct: 114 MLELMRAHGRVGDMAQVFDLMQKQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAG 173
Query: 174 RRLDTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQ 232
L+ + L+ LVK A A +V+ +D IS S + + VL+ + K R D
Sbjct: 174 MSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVL 233
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ EM G P+ SYT I + F + L +M++ GCKP V+T T+V+ L
Sbjct: 234 WLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVL 293
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA 352
A ++ +A V+ KMK+ D D + Y T++ + +
Sbjct: 294 CDAGRLSDAKDVFWKMKASDQKPDR----------------VTYITLLDKCGDSGDSQSV 337
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+++ + D + ++ + C R+ + + V + M+E KGI P++ ++ L
Sbjct: 338 MEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKE---KGISPEQYSYNSL 394
Query: 413 AEELEKKSLGNAKERIDELLTH 434
K + +R EL H
Sbjct: 395 ISGFLKADM---FDRALELFNH 413
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 114/267 (42%), Gaps = 29/267 (10%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ L K A+++F KFK +SL + ++ LI G D A+ EM + G
Sbjct: 744 LIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLG 803
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
PD +Y ++ + ++ EM KG + + +T ++ L K+K++ +A+
Sbjct: 804 CGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAI 863
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-------------------IYNTMISSA 343
+Y + S+ Y L+ L KA + + IYN +++
Sbjct: 864 DLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGH 923
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
+ N ++ +K+ E PD +++ + C R+ DG L+ R++L G+
Sbjct: 924 RIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDG---LSYFRQLLELGLE 980
Query: 404 PQESTHKMLAEELEKKSLGNAKERIDE 430
P + +L + L K ERI+E
Sbjct: 981 PDLIIYNLLIDGLGK------SERIEE 1001
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 106/236 (44%), Gaps = 23/236 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ ++D L + + A VF + K+ IS ++ LI G+ K D A + M
Sbjct: 357 TAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNA 416
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G SP+G ++ FI +Y + K + M+ KG P V V+ +L ++ ++
Sbjct: 417 CGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGM 476
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTMISSACV----------- 345
A +V+ ++K DT Y+ +I SKA + ++ M+ + CV
Sbjct: 477 AKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLID 536
Query: 346 ---RSEEGN-ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+ +GN A KL +++E +P T+ L + ++K+ V++L+ EM
Sbjct: 537 TLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKE---VMHLLEEM 589
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 86/209 (41%), Gaps = 19/209 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ ++ C+ + D A EM + G SP+ SY I + + F + M
Sbjct: 356 YTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMN 415
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
G P+ T + ++ K+ Q +A++ YE MKS + D + ++++ L+++ R
Sbjct: 416 ACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRL- 474
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
G A ++ ++++ PD T+ +K CC K D +N
Sbjct: 475 ---------------GMAKRVFYELKDMGVSPDTITYTMMIK-CCSKASKADE--AMNFF 516
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGN 423
+M+ G VP L + L K GN
Sbjct: 517 SDMVETGCVPDVLALNSLIDTLYKGGKGN 545
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D A++ L+DTL K A+K+F + K+ I ++ ++ L+ G + K +
Sbjct: 527 DVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLL 586
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM P+ ++Y ++ + + L M EKGC P + + VM+ L K
Sbjct: 587 EEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIKE 646
Query: 296 KQIYEALKVYEKMK 309
++ EA +++ +MK
Sbjct: 647 ERFEEAFRMFCQMK 660
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 71/383 (18%), Positives = 146/383 (38%), Gaps = 52/383 (13%)
Query: 53 SPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEAL 112
PDE L + +S+++ E R+ + + +E+ + I+ S ++ +A+
Sbjct: 805 GPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKS-KRLEQAI 863
Query: 113 KCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
+ + G+ TP TY +++ L K+ K L E+ E
Sbjct: 864 DLY---YNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGC----------- 909
Query: 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYA 231
+ + ++L++ + + ++F K + I+ + + VLI C + +
Sbjct: 910 --KPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDG 967
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
+++ + G PD + Y I+ + + + EM++KG P++ T ++
Sbjct: 968 LSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILH 1027
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN 351
L KA + EA ++YE++ I YN +I V N
Sbjct: 1028 LGKAGKASEAAQMYEEL----------------LIKGWKPNVFTYNALIRGYSVSGSTDN 1071
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL--NLMREMLSKGIVPQESTH 409
A DC SLK + + ++ + L EM +G P + T+
Sbjct: 1072 AYAAY----------DCVAVGVSLKTALISGLVDENLINIAEGLFAEMKRRGCGPDQFTY 1121
Query: 410 KMLAEELEKKSLGNAKERIDELL 432
++ + + K RI+E+L
Sbjct: 1122 NLILDAIGKSM------RIEEML 1138
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/203 (17%), Positives = 82/203 (40%), Gaps = 19/203 (9%)
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+ ++ ++ + A++ E+ G SPD ++YT I+ + + +M E
Sbjct: 462 NAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVE 521
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR--- 332
GC P V+ ++ L K + EA K++ ++K Y++L+ L + +
Sbjct: 522 TGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKE 581
Query: 333 ----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+ YNT++ E A+ + + E C PD ++ +
Sbjct: 582 VMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMY 641
Query: 377 MCCHKKRMKDGMLVLNLMREMLS 399
++R ++ + M+++L+
Sbjct: 642 GLIKEERFEEAFRMFCQMKKILA 664
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 135/317 (42%), Gaps = 39/317 (12%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
T G + T+N++++ L + L EL +E M T D
Sbjct: 413 TSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEE-------------MKTKGCHPDEFTY 459
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
++L+D+L R + A + ++ C S + ++ LI G+CK ++ + A++ EM
Sbjct: 460 NMLIDSLCSRGRLEEALSLLKEMESSGC-SRNVVTYNTLIDGFCKNKRIEEAEEIFDEME 518
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G S + V+Y I+ C+ + + + +M +G KP T ++ +A I
Sbjct: 519 LQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIK 578
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI-------------------YNTMI 340
+A + + M S+ C D+ Y +LI LSKA R + YN +I
Sbjct: 579 KAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVI 638
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK-MCCHKKRMKDGMLVLNLMREMLS 399
+ A++L +++ E PD T+ + +C + + ++ + EM
Sbjct: 639 KALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEA---VDFLVEMTD 695
Query: 400 KGIVPQESTHKMLAEEL 416
KG +P S+ MLAE L
Sbjct: 696 KGFLPDFSSFLMLAEGL 712
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 123/276 (44%), Gaps = 24/276 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D + + LM ++ ++ A ++ + SS + +VL+HG+CK + + +
Sbjct: 245 DEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFI 304
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM GF PD ++ + CR + L M ++G P + T ++ L K
Sbjct: 305 DEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKL 364
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA---------VRFL----------IY 336
++ EA+++ +M D +T Y++LI L K R L +
Sbjct: 365 GEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTF 424
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N++I C+ + A++L ++++ C PD T+ + C + R+++ L+L++E
Sbjct: 425 NSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEA---LSLLKE 481
Query: 397 MLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
M S G T+ L + + K + A+E DE+
Sbjct: 482 MESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEM 517
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/395 (22%), Positives = 149/395 (37%), Gaps = 86/395 (21%)
Query: 100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEID-- 157
+R D +++ L WA Q ++ + Y ++ LGK FG M +++E+
Sbjct: 80 RRQSDEDSILDLLD-----WASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHT 134
Query: 158 --ELSNG--------------YVSLAAMSTVMR-----RLDTRAMSVLMDTLVKRNSVAH 196
E+ G + A+ +M +LD + L++ LV N +
Sbjct: 135 GCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKL 194
Query: 197 AYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255
V + I F++LI C+ + A M+EM +G SPD ++T ++
Sbjct: 195 VEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQ 254
Query: 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD---- 311
+ E + ++M GC S +T +++H K +I E L ++M ++
Sbjct: 255 GFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRP 314
Query: 312 -------------------------DCLTDTSF------YSSLIFILSK------AVRFL 334
D + F Y+SLIF L K AV L
Sbjct: 315 DRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEIL 374
Query: 335 -------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
YNT+IS+ C ++ A +L + + PD T ++ C
Sbjct: 375 NQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLT 434
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ L + L EM +KG P E T+ ML + L
Sbjct: 435 NNHR---LAMELFEEMKTKGCHPDEFTYNMLIDSL 466
>gi|356520989|ref|XP_003529141.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Glycine max]
Length = 682
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 156/385 (40%), Gaps = 56/385 (14%)
Query: 81 HALSEDHE-TDVDKVSEILRKRYPSPDKVV------------EALKCFCFTWAKTQTGYM 127
H LSE + KV E + R PD V +CF W + +
Sbjct: 297 HGLSEAGDLGGARKVYEEMVGRGVRPDVVTCNAMLNGLCKAGNVEECFEL-WEEMGKCSL 355
Query: 128 HTPETYNAMVEAL---GKSKKFGLMWELVKEIDELS----------NGYV--SLAAMSTV 172
+YN ++ L GK ++W+ + E D + NGYV +L +
Sbjct: 356 RNVRSYNIFLKGLFENGKVDDAMMLWDGLLEADSATYGVVVHGLCWNGYVNRALQVLEEA 415
Query: 173 MRR-----LDTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTR 226
R +D A S L++ L K + A V L K +S + +VLI G+ K
Sbjct: 416 EHREGGMDVDEFAYSSLINALCKEGRLDEADGVVELMNKRGCKFNSHVCNVLIDGFVKHS 475
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
K D A K +EM G S VSY I R + FR+ + EM EKG KP +IT +
Sbjct: 476 KLDSAVKVFREMSGKGCSLTVVSYNILINGLLRAERFREAYDCVNEMLEKGWKPDIITYS 535
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTMISS 342
++ L ++ + AL+++ + D Y+ +I L + + +Y+T+
Sbjct: 536 TLIGGLYESNMMDAALRLWHQFLDTGHKPDIIMYNIVIHRLCSSGKVEDALQLYSTLRQK 595
Query: 343 ACVR-----------SEEGN---ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
CV + GN A K+ I ED +PD ++ +LK C R+ D
Sbjct: 596 KCVNLVTHNTIMEGFYKVGNCEMASKIWAHILEDELQPDIISYNITLKGLCSCGRVTD-- 653
Query: 389 LVLNLMREMLSKGIVPQESTHKMLA 413
+ + + L +G +P T +L
Sbjct: 654 -AVGFLDDALVRGFLPTAITWNILV 677
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 107/249 (42%), Gaps = 21/249 (8%)
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
R+ + L++ V+ + A A F F+ +S + + ++VL+ CK + + + +
Sbjct: 114 RSFNTLLNAFVESHQWARAENFFKYFEAARVSPNVETYNVLMKVMCKKGEFEKGRGLLTW 173
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M+ G SPD ++Y I + D EM+E+G +P V+ +++ K
Sbjct: 174 MWGAGMSPDRITYGTLIGGVAKSGDLGFALEVFDEMRERGVEPDVVCYNMIIDGFFKRGD 233
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
+A +++E++ L + + S++ YN MIS C L++ +
Sbjct: 234 FVKAGEMWERL-----LREELVFPSVV----------SYNVMISGLCKCGRFSEGLEIWE 278
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
+++++ K D T++ + + V EM+ +G+ P T + L
Sbjct: 279 RMKKNERKCDLFTYSALIHGLSEAGDLGGARKV---YEEMVGRGVRPDVVTCNAMLNGLC 335
Query: 418 KKSLGNAKE 426
K GN +E
Sbjct: 336 KA--GNVEE 342
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 15/179 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY ++ + KS G E+ E+ E D ++++D KR
Sbjct: 185 TYGTLIGGVAKSGDLGFALEVFDEMRERG-------------VEPDVVCYNMIIDGFFKR 231
Query: 192 NSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
A +++ + ++ + S ++V+I G CK + + + M ++ D +
Sbjct: 232 GDFVKAGEMWERLLREELVFPSVVSYNVMISGLCKCGRFSEGLEIWERMKKNERKCDLFT 291
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
Y+ I D +EM +G +P V+TC +++ L KA + E +++E+M
Sbjct: 292 YSALIHGLSEAGDLGGARKVYEEMVGRGVRPDVVTCNAMLNGLCKAGNVEECFELWEEM 350
>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 806
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 143/347 (41%), Gaps = 54/347 (15%)
Query: 106 DKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG--- 162
D++ EAL F + +TG++ ++ MVE GL +V + L NG
Sbjct: 190 DRISEALALFGYM---VETGFLEAVALFDQMVE-------IGLT-PVVITFNTLINGLCL 238
Query: 163 ---YVSLAAMSTVM----RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQI 214
+ AA+ M +D +++ + K A + K ++ I I
Sbjct: 239 EGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVI 298
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +I CK AQ EM + G +P+ +Y C I+ +C + L++M
Sbjct: 299 YSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMI 358
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
E+ P V+T ++ A K +++EA K+ ++M DT Y+S+I+ K RF
Sbjct: 359 EREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFD 418
Query: 334 ---LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
+++ M S PD T + + C KR+ +GM
Sbjct: 419 DAKHMFDLMAS------------------------PDVVTFNTIIDVYCRAKRVDEGM-- 452
Query: 391 LNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHAT 436
L+RE+ +G+V +T+ L E +L A++ E+++H
Sbjct: 453 -QLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 498
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 130/306 (42%), Gaps = 43/306 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T+NA++ A S K G ++E K DE+ + + DT + ++ K
Sbjct: 368 TFNALISA---SVKEGKLFEAEKLCDEMLHRCIFP----------DTVTYNSMIYGFCKH 414
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
N A +F + D ++ F+ +I +C+ ++ D + ++E+ + G + +
Sbjct: 415 NRFDDAKHMFDLMASPDVVT-----FNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTT 469
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y I +C + +EM G P ITC I+++ + +++ EAL+++E ++
Sbjct: 470 YNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQ 529
Query: 310 SDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRSEEG 350
DT Y+ +I + K + YN MIS C +S
Sbjct: 530 MSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAIS 589
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
+A L K++++ +PD T+ ++ C + + L+ EM S G T K
Sbjct: 590 DANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKS---IELISEMRSNGFSGDAFTIK 646
Query: 411 MLAEEL 416
M AEE+
Sbjct: 647 M-AEEI 651
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 84/222 (37%), Gaps = 34/222 (15%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK------ 261
I L+ F++LI +C K ++ ++ + GF PD V++ + C E
Sbjct: 137 IPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEAL 196
Query: 262 ---------DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
F + +M E G P VIT +++ L ++ EA + KM
Sbjct: 197 ALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKG 256
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
D + Y T+++ C + +AL L K+EE KPD ++
Sbjct: 257 LHIDV----------------VTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYS 300
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ C D L EML KGI P T+ + +
Sbjct: 301 AIIDRLCKDGHHSDAQY---LFSEMLEKGIAPNVFTYNCMID 339
>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
Length = 668
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 115/273 (42%), Gaps = 26/273 (9%)
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ A++ L+ L VA A +FL+F I ++ ++ L+ G+ + A++ +
Sbjct: 263 SNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVL 322
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM Q G +PD +Y+ ++ Y R + LKEM+ G KPS + ++
Sbjct: 323 DEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDR 382
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIY 336
+A V +M++ D FY+ +I K + +
Sbjct: 383 GDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTW 442
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT+I + C A +L +++ E +C P T+ + + ++ + V ++ E
Sbjct: 443 NTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEG---VEAMLSE 499
Query: 397 MLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
M +G+VP T+ L + + G KE ID
Sbjct: 500 MKEQGLVPNIITYTTLVDVYGRS--GRYKEAID 530
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 113/276 (40%), Gaps = 23/276 (8%)
Query: 162 GYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIH 220
+ L M R D +V++DT K N + HA F K ++ I ++ LI
Sbjct: 388 AFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLID 447
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
CK + D A + +EM + P +Y I ++ + V+ L EM+E+G P
Sbjct: 448 AHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVP 507
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----------- 329
++IT T ++ ++ + EA+ E MK+D + Y +L+ ++
Sbjct: 508 NIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVV 567
Query: 330 --------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
V L+ N++I++ A + Q + E+ +PD T+ +K
Sbjct: 568 KAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRV 627
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
++ V + EM++ G P ML L+
Sbjct: 628 EQFDK---VPVIYEEMITSGCAPDRKARAMLRSGLK 660
>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
Length = 691
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 138/328 (42%), Gaps = 42/328 (12%)
Query: 135 AMVEALGKSKKFGL-MWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNS 193
AM+ GK K G+ + + I L NG +S L + + L+ T V N+
Sbjct: 323 AMLSLFGKYLKNGVTIGDYTCSI--LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNT 380
Query: 194 VAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
+ + Y + + S Q+ ++ LI+G CK + AQ + EM +G
Sbjct: 381 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 440
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
+P ++ I+ Y R K L EMQE G KP+V++ +++A K +I EA+
Sbjct: 441 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 500
Query: 303 KVYEKMKSDDCLTDTSFYSSLI------------FILSKAVR-------FLIYNTMISSA 343
+ + M D L + Y+++I FIL + ++ + YN +I
Sbjct: 501 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 560
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C +S+ A ++ + PD ++ + CC++ + L+L + M GI
Sbjct: 561 CNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDK---ALDLQQRMHKYGIK 617
Query: 404 PQESTHKMLAEELEKKSLGNAKERIDEL 431
T+ L LG A R++E+
Sbjct: 618 STVRTYHQLI-----SGLGGAG-RLNEM 639
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 122/302 (40%), Gaps = 16/302 (5%)
Query: 29 LCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHE 88
L N +C T EL G S ++ D + + + + L E+ + L E +
Sbjct: 381 LINGYCQTGELEGAFSTFGQMKSRHIKPDHI--TYNALINGLCKAERITNAQDLLMEMQD 438
Query: 89 TDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGL 148
V+ E + + + KCF + G +Y ++V A K+ K
Sbjct: 439 NGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK--- 495
Query: 149 MWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DC 207
+ E V +D++ + V A + + ++D V+ A+ + K K +
Sbjct: 496 IPEAVAILDDMFHKDVLPNA----------QVYNAIIDAYVEHGPNDQAFILVEKMKSNG 545
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS S +++LI G C + A++ + + H PD VSY I C + K
Sbjct: 546 ISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKAL 605
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ M + G K +V T ++ L A ++ E +Y+KM ++ + + ++ ++
Sbjct: 606 DLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAY 665
Query: 328 SK 329
SK
Sbjct: 666 SK 667
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 80/200 (40%), Gaps = 19/200 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++VL+ G C+ + + EM PDG +Y+ + R D + + +
Sbjct: 273 YNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYL 332
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ G TC+I+++ L K ++ A +V + L + + +
Sbjct: 333 KNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQS------LVNAGLVPTRV---------- 376
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
IYNT+I+ C E A +++ KPD T+ + C +R+ + +L+
Sbjct: 377 IYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQ---DLL 433
Query: 395 REMLSKGIVPQESTHKMLAE 414
EM G+ P T L +
Sbjct: 434 MEMQDNGVNPTVETFNTLID 453
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/231 (18%), Positives = 96/231 (41%), Gaps = 20/231 (8%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
G T ET+N +++A G++ + + ++ E+ E NG + + +
Sbjct: 439 NGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQE--NGL-----------KPNVVSYGS 485
Query: 184 LMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+++ K + A + + KD + ++Q+++ +I + + +D A +++M +
Sbjct: 486 IVNAFCKNGKIPEAVAILDDMFHKDVLP-NAQVYNAIIDAYVEHGPNDQAFILVEKMKSN 544
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G SP V+Y I+ C + + + + + P ++ ++ A I +A
Sbjct: 545 GISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKA 604
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----LIYNTMISSACVRSE 348
L + ++M + Y LI L A R +Y M+ + V S
Sbjct: 605 LDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSN 655
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 53/115 (46%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++V+I G + + A + EM + P+ ++Y I+ + + D +M
Sbjct: 203 YNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMV 262
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
G KP+ IT +++ L +A ++ E + ++M S + D YS L LS+
Sbjct: 263 CHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 317
>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
Length = 543
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 113/255 (44%), Gaps = 28/255 (10%)
Query: 184 LMDTLVKRNSVAHAYKVF---LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L+ TLVK AY++F L + C + ++ LI G+CK + A + + EM +
Sbjct: 75 LLRTLVKARRHHQAYQIFRDELLGQHC-DTNHITYNTLIGGFCKAGDMERAFQLLAEMKE 133
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G SPD V+++ ++ C + + +E E C P + I++H L KA Q+ E
Sbjct: 134 RGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVE--CAPDSVLFNILVHGLCKANQLSE 191
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMIS 341
A ++ E+M + D Y+SLI L K+ R + YNT+I
Sbjct: 192 ARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIY 251
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C G A +L +++ + PD T + C K ++ VL+LM++ L
Sbjct: 252 GYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLC-- 309
Query: 402 IVPQESTHKMLAEEL 416
P T+ +L L
Sbjct: 310 -APNLVTYNVLISGL 323
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 151/351 (43%), Gaps = 29/351 (8%)
Query: 98 LRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETY-NAMVEALGKSKKFGLMWELVKEI 156
+++R SPD V + A TG + Y VE S F ++ + +
Sbjct: 131 MKERGHSPDVVTHS----SIVQALCNTGNLSRAMQYFRESVECAPDSVLFNILVHGLCKA 186
Query: 157 DELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIF 215
++LS + MS D + L+D L K + A ++ K + + +
Sbjct: 187 NQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTY 246
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+ LI+G+CKT + A + ++ M Q G PD V++ I +C++ K L M++
Sbjct: 247 NTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKK 306
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR--- 332
C P+++T +++ L A + EA ++ +M L D Y+SLI I + +
Sbjct: 307 GLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQ 366
Query: 333 -FLIYNTMI--------------SSACVRSEEGN-ALKLRQKIEEDSCKPDCETHARSLK 376
F I N M+ + A ++SE + A L + + P+ T ++
Sbjct: 367 AFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLME 426
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKE 426
C +R+ + +L +MR + G P ST+++L L K + +AKE
Sbjct: 427 GLCCSRRLDEARHLLAVMRRV---GCDPAASTYEVLVTGLCKAGRVDDAKE 474
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 81/201 (40%), Gaps = 18/201 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE---LSNGYVSLAAMSTVMRRLDTRAMSVLMDTL 188
TYN ++ L + + EL+ E+D L + + + R + + +
Sbjct: 315 TYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLM 374
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
V+R + D IS + +L K+ + D A + MF G P+
Sbjct: 375 VERGVI----------PDGISYCTLAVALL-----KSERFDEAFALLDNMFDAGAIPNLF 419
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
++ +E C + + + L M+ GC P+ T +++ L KA ++ +A +V M
Sbjct: 420 TFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMM 479
Query: 309 KSDDCLTDTSFYSSLIFILSK 329
S+ S +++ L++
Sbjct: 480 VSEGIQPLVSSSGTIVHTLAR 500
>gi|297740791|emb|CBI30973.3| unnamed protein product [Vitis vinifera]
Length = 722
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 108/240 (45%), Gaps = 24/240 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D +LM L N + A+K+ K + ++ I++ +IH CK K A+ M
Sbjct: 80 DDYTFGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYNTMIHALCKNGKVGRARSLM 139
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM + P V++ I YC+E++ + L++ G P V+T T V+ L KA
Sbjct: 140 NEMVE----PSDVTFNVLISAYCQEENLVQALVLLEKSFSMGFVPDVVTATKVVGILCKA 195
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI---FILSKAV---RFL-------------IY 336
++ E ++V E+++S + D Y++LI +L KA R L Y
Sbjct: 196 GRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLKDMEIKGCLPNVDTY 255
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N + S C +A+ L ++ D + T+ ++ C RM+DG +L LM E
Sbjct: 256 NILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGGRMEDGFKILELMEE 315
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 93/203 (45%), Gaps = 16/203 (7%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
YN+++ L K +F E + ++++L R R++ +L
Sbjct: 327 YNSIIYGLYKKNQFEEALEFLTKMEKL-------------FPRAVDRSLRIL--GFCNEG 371
Query: 193 SVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
S+ A +V+ + K+ S ++ LIHG+C+ A + + EM HG+ P ++
Sbjct: 372 SIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDHGYFPTAPTFN 431
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
I +C + +++M +GC P + + + ++ AL +A++++ +M
Sbjct: 432 ALISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEK 491
Query: 312 DCLTDTSFYSSLIFILSKAVRFL 334
D L D S ++S++ L++ +L
Sbjct: 492 DILPDYSTWNSMLLCLTQETVWL 514
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 85/194 (43%), Gaps = 21/194 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I+G K + + A + + +M + P V + I +C E +M
Sbjct: 327 YNSIIYGLYKKNQFEEALEFLTKMEK--LFPRAVDRSLRILGFCNEGSIGDAKRVYDQMI 384
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
++G PSV+ ++H + + EA ++ +M D ++ +
Sbjct: 385 KEGGVPSVLVYVCLIHGFCQDGNVREAFELINEM------VDHGYFPTAP---------- 428
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+N +IS+ C + + G+ALKL + + C PD +++ + C+K + + L
Sbjct: 429 TFNALISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQK---AVRLF 485
Query: 395 REMLSKGIVPQEST 408
+M+ K I+P ST
Sbjct: 486 LQMVEKDILPDYST 499
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 82/205 (40%), Gaps = 17/205 (8%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
IF ++ G + R K + + + G +P + ++ +E ++ K+M
Sbjct: 13 IFVTIVRGLGRARMVRQMIKVLDLITKFGENPSLKIFNSILDVLVKEDIDLAREFYRKKM 72
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
G T I+M L +I +A K+ + MKS +T Y+++I L K +
Sbjct: 73 MMNGVSGDDYTFGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYNTMIHALCKNGKV 132
Query: 334 ---------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+ +N +IS+ C AL L +K PD T + + +
Sbjct: 133 GRARSLMNEMVEPSDVTFNVLISAYCQEENLVQALVLLEKSFSMGFVPDVVTATKVVGIL 192
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIV 403
C R+ +G+ VL + M G+V
Sbjct: 193 CKAGRVTEGVEVLERVESM--GGVV 215
>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
Length = 368
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 106/246 (43%), Gaps = 22/246 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF--DVLIHGWCKTRKSDYAQKA 234
D S ++D+L K V A +F + +S IF + LI G C + A
Sbjct: 44 DVVTYSTIIDSLCKDRRVNEALDIF-SYMKAKGISPNIFTYNSLIQGLCNFSRWREASAM 102
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ EM P+ V+++ I +C+E + + LK M E G +P+V+T + +M+
Sbjct: 103 LNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSL 162
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
+++EA K+++ M + C D YN +I+ C G A +
Sbjct: 163 QAEVFEARKLFDVMITKGCKPDV----------------FSYNILINGYCKAKRIGEAKQ 206
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
L ++ PD ++ + C R+++ +L + ML+ G +P T+ +L +
Sbjct: 207 LFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAH---DLFKNMLTNGNLPDLCTYSILLD 263
Query: 415 ELEKKS 420
K+
Sbjct: 264 GFCKQG 269
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 104/242 (42%), Gaps = 23/242 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +I+G CK ++ A K+M + G PD V+Y+ I+ C+++ + M+
Sbjct: 13 YTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMK 72
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
KG P++ T ++ L + EA + +M S + + + +S LI I K
Sbjct: 73 AKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVF 132
Query: 330 --------------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ Y+++++ +++E A KL + CKPD ++ +
Sbjct: 133 EARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILI 192
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTH 434
C KR+ + + N EM+ +G+ P ++ L + L + L A + +LT+
Sbjct: 193 NGYCKAKRIGEAKQLFN---EMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTN 249
Query: 435 AT 436
Sbjct: 250 GN 251
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 102/254 (40%), Gaps = 52/254 (20%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL 166
+V EAL F + AK G TYN++++ L + W +E + N +SL
Sbjct: 60 RVNEALDIFSYMKAK---GISPNIFTYNSLIQGLCNFSR----W---REASAMLNEMMSL 109
Query: 167 AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKV---------------FLKFKDCISLS 211
M ++ S+L++ K +V A V + + SL
Sbjct: 110 NIMPNIV------TFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQ 163
Query: 212 SQIF---------------------DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+++F ++LI+G+CK ++ A++ EM G +PD VSY
Sbjct: 164 AEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSY 223
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I+ C+ R+ K M G P + T +I++ K + +A +++ M+S
Sbjct: 224 NTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQS 283
Query: 311 DDCLTDTSFYSSLI 324
+ Y+ LI
Sbjct: 284 TYLKPNMVMYNILI 297
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 20/205 (9%)
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M G+ PD +YT I C+ + K+M E GC+P V+T + ++ +L K ++
Sbjct: 1 MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
+ EAL ++ MK+ S IF YN++I C S A +
Sbjct: 61 VNEALDIFSYMKAKGI-------SPNIF---------TYNSLIQGLCNFSRWREASAMLN 104
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
++ + P+ T + + + C + + + VL M EM G+ P T+ L
Sbjct: 105 EMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEM---GVEPNVVTYSSLMNGYS 161
Query: 418 KKS-LGNAKERIDELLTHATEQRTF 441
++ + A++ D ++T + F
Sbjct: 162 LQAEVFEARKLFDVMITKGCKPDVF 186
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF------KDCISLSSQIFDVLIHGWCKTRKSDY 230
D + ++L++ K + A ++F + D +S ++ LI G C+ +
Sbjct: 184 DVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVS-----YNTLIDGLCQLGRLRE 238
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A K M +G PD +Y+ ++ +C++ K + MQ KP+++ I++
Sbjct: 239 AHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILID 298
Query: 291 ALEKAKQIYEALKVYEKM 308
A+ K++ + EA K++ ++
Sbjct: 299 AMCKSRNLKEARKLFSEL 316
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 16/121 (13%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP+ +YN +++ L + + +L K + L+NG + D S+L+D
Sbjct: 217 TPDIVSYNTLIDGLCQLGRLREAHDLFKNM--LTNGNLP-----------DLCTYSILLD 263
Query: 187 TLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
K+ +A A+++F + + + ++++LI CK+R A+K E+F G P
Sbjct: 264 GFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQP 323
Query: 246 D 246
+
Sbjct: 324 N 324
>gi|147776740|emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
Length = 422
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/349 (21%), Positives = 144/349 (41%), Gaps = 44/349 (12%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE----------------IDELS 160
F A Q + H+ +++ ++ LG +++F LM +L+ I+
Sbjct: 34 FDLASLQPNFKHSYSSFHILILKLGWARQFSLMQDLLMRLKSEQYSINPSLFSDIIEIYG 93
Query: 161 NGYVSLAAMSTVMRRLD------TRAMSVLMDTLVK-RNSVAHAYKVF-LKFKDCISLSS 212
+ A+ T L + ++ L+ LV RN + A+ +F + +S +
Sbjct: 94 EANLPDQALKTFHSMLQFHSKPLPKHLNXLLQLLVSHRNYIRPAFDLFKSAHRYGVSPDT 153
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
+ +++L+ +C A +MF+ +PD SY ++ CR+ + L++
Sbjct: 154 KSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQGLCRKSQVNRAVDLLED 213
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M KG P ++ T ++++L + K++ EA K+ +MK C D
Sbjct: 214 MLNKGYVPDALSYTTLLNSLCRKKKLKEAYKLLCRMKVKGCNPD---------------- 257
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
+ YNT+I C +A K+ + + + C P+ ++ + C + + N
Sbjct: 258 IVHYNTVILGFCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCDQGLYDEAK---N 314
Query: 393 LMREMLSKGIVPQEST-HKMLAEELEKKSLGNAKERIDELLTHATEQRT 440
+ EMLSKG P S H ++ L A E + E+L H T
Sbjct: 315 YVEEMLSKGFSPHFSVFHALINGFCNVGKLEEACEVLXEMLRHGEAXHT 363
>gi|297839599|ref|XP_002887681.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297333522|gb|EFH63940.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 459
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/383 (21%), Positives = 154/383 (40%), Gaps = 47/383 (12%)
Query: 75 QSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFC--FTWAKTQTGYMHTPET 132
+S + LS++ + +V + Y P K+ L+ F W + G+ H T
Sbjct: 70 RSPLKQRNLSDESQRRRSEVLVLGPGAYIDPKKISLGLQKALEFFFWIEIHFGFGHNEIT 129
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
M L K F +W+ ++++ NG + T +++ LM L +
Sbjct: 130 CRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVT----------TASITCLMKCLGEEG 179
Query: 193 SVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF--SPDGVS 249
V A F + K+ ++ +I+ C+ A+ + +M GF PD +
Sbjct: 180 FVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTYT 239
Query: 250 YTCFIEHYCR-------EKDFRK----VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
YT I YCR K R+ + +EM +G P V+T ++ K +I
Sbjct: 240 YTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRI 299
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE-EGNALKLRQ 357
AL+++E MK+ C+ + + YN+ I V +E EG +R
Sbjct: 300 GRALELFEDMKTKGCVPNQ----------------VTYNSFIRYYSVTNEIEGAIEMMRT 343
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
+ P T+ + +R + +L+ EM+ G+VP+E T+K++ + L
Sbjct: 344 MKKMGHGVPGSSTYTPLIHALVETRRAAEAR---DLLVEMVEAGLVPREYTYKLVWDALS 400
Query: 418 KKSL-GNAKERIDELLTHATEQR 439
+ + G E + + + +QR
Sbjct: 401 SEGMAGTLDEELHKRMREGIQQR 423
>gi|224085974|ref|XP_002307761.1| predicted protein [Populus trichocarpa]
gi|222857210|gb|EEE94757.1| predicted protein [Populus trichocarpa]
Length = 563
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 117/274 (42%), Gaps = 29/274 (10%)
Query: 81 HALSE-DHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEA 139
AL+E + +D V+E+L + + EA+ F F WA Q ++YN ++ A
Sbjct: 122 RALTECSVDLSLDVVAEVLNR----GNLGGEAMIMF-FNWAIKQPMISKDVDSYNVVIRA 176
Query: 140 LGKSKKFGLMWELVKEID----ELSNGYVSLAAMSTV-MRRL------------------ 176
LG+ K M + + E+ +++ S+ S V RR+
Sbjct: 177 LGRRKFIDFMVKFLHELRVEGVSMNSETFSIVIDSLVRARRVYKAIQMFGNLEEEFGFER 236
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
D +++VL+ L +R+ V A F K I + ++V+I GW K + Q+ +
Sbjct: 237 DAESLNVLLQCLCRRSHVGAANSYFNSVKGKIPFNCMTYNVIIGGWSKFGRVSEMQRVFE 296
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM + GFSPD +S++ +E R M+EKGC P ++
Sbjct: 297 EMEEDGFSPDCLSFSYLLEGLGRAGKIEDAVMIFGSMEEKGCVPDTNVYNAMISNFISVG 356
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
E +K Y + S +C + Y+ +I L KA
Sbjct: 357 NFDECMKYYRCLLSKNCDPNIDTYTRMISGLIKA 390
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 37/228 (16%)
Query: 227 KSDYAQKAMKEMF-----QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
+ + +AM F Q S D SY I R K + L E++ +G +
Sbjct: 142 RGNLGGEAMIMFFNWAIKQPMISKDVDSYNVVIRALGRRKFIDFMVKFLHELRVEGVSMN 201
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSD--------------DCL-------TDTSFY 320
T +IV+ +L +A+++Y+A++++ ++ + CL S++
Sbjct: 202 SETFSIVIDSLVRARRVYKAIQMFGNLEEEFGFERDAESLNVLLQCLCRRSHVGAANSYF 261
Query: 321 SSLIFILSKAVRF--LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+S+ + F + YN +I ++ +++EED PDC + + L+
Sbjct: 262 NSV----KGKIPFNCMTYNVIIGGWSKFGRVSEMQRVFEEMEEDGFSPDCLSFSYLLEGL 317
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
+++D +++ M E KG VP + + + S+GN E
Sbjct: 318 GRAGKIEDAVMIFGSMEE---KGCVPDTNVYNAMISNF--ISVGNFDE 360
>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 323
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 109/250 (43%), Gaps = 22/250 (8%)
Query: 166 LAAMSTVMRRLDT--RAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGW 222
L A++ V R ++ + +++ L K A + K ++ I I++ +I
Sbjct: 27 LQALALVDRMVEEGHQPYGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRL 86
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
CK +AQ EM G PD ++Y+ I+ +CR + + L++M E+ P V
Sbjct: 87 CKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDV 146
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISS 342
+T + +++AL K ++ EA ++Y M T + YN+MI
Sbjct: 147 VTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTT----------------ITYNSMIDG 190
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C + +A ++ + SC PD T + + C KR+ +GM + EM +GI
Sbjct: 191 FCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGM---EIFCEMHRRGI 247
Query: 403 VPQESTHKML 412
V T+ L
Sbjct: 248 VANTVTYTTL 257
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 75/166 (45%), Gaps = 19/166 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F LI+ K K A++ +M + G P ++Y I+ +C++ L M
Sbjct: 149 FSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMA 208
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
K C P V+T + +++ KAK++ ++++ +M + +T Y++LI
Sbjct: 209 SKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLD 268
Query: 325 -------FILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEE 361
++S V ++ + +M++S C + E A + + +++
Sbjct: 269 AAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQK 314
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 16/180 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T++A++ AL K K V E +E+ + T T + ++D K+
Sbjct: 148 TFSALINALVKEGK-------VSEAEEIYGDMLRRGIFPT------TITYNSMIDGFCKQ 194
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ + A ++ + K C S F LI+G+CK ++ D + EM + G + V+
Sbjct: 195 DRLNDAKRMLDSMASKSC-SPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVT 253
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
YT I +C+ D L M G P+ IT ++ +L K++ +A + E ++
Sbjct: 254 YTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQ 313
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 18/171 (10%)
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD---------DCLTDTSFYSSL 323
M E GC+P V+T T +M+ L ++ +AL + ++M + + L S
Sbjct: 1 MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESA 60
Query: 324 IFILSKA------VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
+ +LSK +IYN +I C +A L ++ + PD T++ +
Sbjct: 61 LNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDS 120
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
C R D L+R+M+ + I P T L L K+ + E I
Sbjct: 121 FCRSGRWTDAE---QLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEI 168
>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
macrophylla]
Length = 431
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 120/280 (42%), Gaps = 33/280 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L + R + D SVL++ L K + +
Sbjct: 170 KWGLRPSVV-SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 228
Query: 195 AHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
A ++F + K + + IF LI G CK + D A + K+M PD ++Y
Sbjct: 229 DDANELFDEMLVKGLVP-NGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNT 287
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I C++ D ++V + + EM KG KP IT T ++ K + A + ++M ++
Sbjct: 288 LIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQEN 347
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
D Y++L IS C +A K+ +++ KPD T+
Sbjct: 348 IRLDEVAYTAL----------------ISGLCQEGRSVDAEKMLREMLNVGLKPDARTYT 391
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C K + G L++EM G VP T+ +L
Sbjct: 392 MIINEFCKKGDVWKGS---KLLKEMQRDGHVPSVVTYNVL 428
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 130/317 (41%), Gaps = 50/317 (15%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRL----DTRAMSVLM 185
+T ++E L K K F L+W KEI L GY SL + +M R D R +
Sbjct: 108 DTCRKVLEHLMKLKYFKLVWGFYKEI--LECGYPASLYFFNILMHRFCKDGDIRVAQSVF 165
Query: 186 DTLVK---RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
D + K R SV ++ L++G+ + D + M G
Sbjct: 166 DAITKWGLRPSVVS------------------YNTLMNGYIRLGDLDEGFRLKSAMLASG 207
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
PD +Y+ I C+E + EM KG P+ + T ++ K ++ A+
Sbjct: 208 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAM 267
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILS-----KAVRFLI--------------YNTMISSA 343
++Y++M S L D Y++LI+ L K V LI Y T+I
Sbjct: 268 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGC 327
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C + A + R+++ +++ + D + + C + R D ++REML+ G+
Sbjct: 328 CKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAE---KMLREMLNVGLK 384
Query: 404 PQESTHKMLAEELEKKS 420
P T+ M+ E KK
Sbjct: 385 PDARTYTMIINEFCKKG 401
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 14/161 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K + L+ E MS + D + L+D K
Sbjct: 284 TYNTLIYGLCKKGDLKQVHHLIDE-------------MSMKGLKPDKITYTTLIDGCCKE 330
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A++ + ++ I L + LI G C+ +S A+K ++EM G PD +Y
Sbjct: 331 GDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTY 390
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
T I +C++ D K LKEMQ G PSV+T ++M+
Sbjct: 391 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G CK D A + K+M Q D V+YT I C+E + L+EM
Sbjct: 320 YTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREML 379
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G KP T T++++ K +++ K+ ++M+ D + Y+ L+
Sbjct: 380 NVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
Length = 644
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 148/332 (44%), Gaps = 47/332 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKE---IDELSN--------GYVS-----------LAAM 169
+YNA+++ L +K++G + EL+ E +D N GY+ LA M
Sbjct: 218 SYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQM 277
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRK 227
S D R + ++D + K + A ++ + L + ++ ++ G C +
Sbjct: 278 SEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPS-YGLKPNVVCYNTVLKGLCSAER 336
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
A++ + EMFQ D V++ ++ +C+ +V L++M GC P VIT T
Sbjct: 337 WKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTT 396
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------- 333
V++ K I EA+ + + M S C +T Y+ ++ L A R+
Sbjct: 397 VINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456
Query: 334 -----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
+ +NT+I+ C + A++L +++ + C PD +++ + + ++ +
Sbjct: 457 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 516
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+LN+ M++KGI P + +A L ++
Sbjct: 517 ELLNV---MVNKGISPNTIIYSSIACALSREG 545
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 120/290 (41%), Gaps = 59/290 (20%)
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
KDC L F++L+ +C+ D + +++M HG PD ++YT I +C+E
Sbjct: 350 KDC-PLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLID 408
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ--------------------------- 297
+ LK M GCKP+ ++ TIV+ L A +
Sbjct: 409 EAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLI 468
Query: 298 --------IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTMI----- 340
+ +A+++ ++M + C D YS++I L KA + + N M+
Sbjct: 469 NFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGIS 528
Query: 341 -------SSACVRSEEGNALKLRQ---KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
S AC S EG K+ Q I++ + + D + + C +
Sbjct: 529 PNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRA--- 585
Query: 391 LNLMREMLSKGIVPQESTHKMLAEELEKKSLG-NAKERIDELLTHATEQR 439
++ M+S G +P EST+ ML + L + L A+E + EL + ++
Sbjct: 586 IDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGALRK 635
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 22/210 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F ++ G C + A + + EM G +P Y +E CR FR L+ M
Sbjct: 114 FFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMH 173
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
KGC C +V++A+ + + EA+ + K+ C D Y++++ L A R+
Sbjct: 174 AKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWG 233
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ +NT+I C ++ ++ E C PD +A +
Sbjct: 234 DVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATII 293
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
C + ++ +LN M S G+ P
Sbjct: 294 DGICKEGHLEVANEILN---RMPSYGLKPN 320
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 50/270 (18%), Positives = 109/270 (40%), Gaps = 26/270 (9%)
Query: 188 LVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L R +A A +V + FK C + ++ V++ C++ + + ++ M G +
Sbjct: 121 LCTRGRIADALEVLDEMSFKGCAPIPP-MYHVILEAACRSGGFRNSVRVLEAMHAKGCTL 179
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D + + C + + L+++ GC+ +++ V+ L AK+ + ++
Sbjct: 180 DTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELM 239
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVR 346
++M DC + +++LI L + F +Y T+I C
Sbjct: 240 DEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKE 299
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
A ++ ++ KP+ + LK C +R K+ L+ EM K +
Sbjct: 300 GHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAE---ELLSEMFQKDCPLDD 356
Query: 407 STHKMLAEELEKKSLGN-AKERIDELLTHA 435
T +L + + L + E ++++L+H
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHG 386
>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
Length = 644
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 148/332 (44%), Gaps = 47/332 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKE---IDELSN--------GYVS-----------LAAM 169
+YNA+++ L +K++G + EL+ E +D N GY+ LA M
Sbjct: 218 SYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQM 277
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRK 227
S D R + ++D + K + A ++ + L + ++ ++ G C +
Sbjct: 278 SEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPS-YGLKPNVVCYNTVLKGLCSAER 336
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
A++ + EMFQ D V++ ++ +C+ +V L++M GC P VIT T
Sbjct: 337 WKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTT 396
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------- 333
V++ K I EA+ + + M S C +T Y+ ++ L A R+
Sbjct: 397 VINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456
Query: 334 -----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
+ +NT+I+ C + A++L +++ + C PD +++ + + ++ +
Sbjct: 457 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 516
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+LN+ M++KGI P + +A L ++
Sbjct: 517 ELLNV---MVNKGISPNTIIYSSIACALSREG 545
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 120/290 (41%), Gaps = 59/290 (20%)
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
KDC L F++L+ +C+ D + +++M HG PD ++YT I +C+E
Sbjct: 350 KDC-PLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLID 408
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ--------------------------- 297
+ LK M GCKP+ ++ TIV+ L A +
Sbjct: 409 EAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLI 468
Query: 298 --------IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTMI----- 340
+ +A+++ ++M + C D YS++I L KA + + N M+
Sbjct: 469 NFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGIS 528
Query: 341 -------SSACVRSEEGNALKLRQ---KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
S AC S EG K+ Q I++ + + D + + C +
Sbjct: 529 PNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRA--- 585
Query: 391 LNLMREMLSKGIVPQESTHKMLAEELEKKSLG-NAKERIDELLTHATEQR 439
++ M+S G +P EST+ ML + L + L A+E + EL + ++
Sbjct: 586 IDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGALRK 635
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 22/210 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F ++ G C + A + + EM G +P Y +E CR FR L+ M
Sbjct: 114 FFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMH 173
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
KGC C +V++A+ + + EA+ + K+ C D Y++++ L A R+
Sbjct: 174 AKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWG 233
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ +NT+I C ++ ++ E C PD +A +
Sbjct: 234 DVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATII 293
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
C + ++ +LN M S G+ P
Sbjct: 294 DGICKEGHLEVANEILN---RMPSYGLKPN 320
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 50/270 (18%), Positives = 109/270 (40%), Gaps = 26/270 (9%)
Query: 188 LVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L R +A A +V + FK C + ++ V++ C++ + + ++ M G +
Sbjct: 121 LCTRGRIADALEVLDEMSFKGCAPIPP-MYHVILEAACRSGGFRNSVRVLEAMHAKGCTL 179
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D + + C + + L+++ GC+ +++ V+ L AK+ + ++
Sbjct: 180 DTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELM 239
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVR 346
++M DC + +++LI L + F +Y T+I C
Sbjct: 240 DEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKE 299
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
A ++ ++ KP+ + LK C +R K+ L+ EM K +
Sbjct: 300 GHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAE---ELLSEMFQKDCPLDD 356
Query: 407 STHKMLAEELEKKSLGN-AKERIDELLTHA 435
T +L + + L + E ++++L+H
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHG 386
>gi|224081867|ref|XP_002306508.1| predicted protein [Populus trichocarpa]
gi|222855957|gb|EEE93504.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 141/328 (42%), Gaps = 48/328 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE-------------LSNGY 163
F W +T++ + HT ETYN M++ LGK +F L W+L++ + L + Y
Sbjct: 67 FNWVETESQFQHTTETYNRMIDILGKFFEFDLSWDLIQRMRNNPFSTPNHTTFRVLFHRY 126
Query: 164 VSL----AAMSTVMRRL------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS-- 211
+S A+S RL D + +L+D L + V A+++ +
Sbjct: 127 ISAHLVNEAVSVYEDRLKEFGLKDETSYCILVDALCEYKHVIEAHELCFGNNNNSINVRN 186
Query: 212 -SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++I+++++ GW K ++ +EM + D SY+ +++ C+ K
Sbjct: 187 ITKIYNMILRGWFKMGWWGKCREFWEEMDRKEVCKDLHSYSIYMDILCKSGKPWKAVKLY 246
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
KEM+ KG K V+ V++A+ ++ + L+VY +M+ C +
Sbjct: 247 KEMKSKGIKLDVVAYNTVINAIGLSEGVDFVLRVYREMRELGCQPNV------------- 293
Query: 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
+ NT+I C A K+ ++ + PD T+ C + ++ +
Sbjct: 294 ---VTCNTVIKLLCENGRIKEAYKMLDEMPQSYIAPDVFTYH------CFFRCLEKPKEI 344
Query: 391 LNLMREMLSKGIVPQESTHKMLAEELEK 418
L L +M+ G+ P+ T+ ML + +
Sbjct: 345 LCLFDQMIENGVCPRMDTYVMLMRKFGR 372
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 85/194 (43%), Gaps = 17/194 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
+Y+ ++ L KS G W+ VK E+ + + +LD A + +++ +
Sbjct: 225 SYSIYMDILCKS---GKPWKAVKLYKEMKSKGI----------KLDVVAYNTVINAIGLS 271
Query: 192 NSVAHAYKVFLKFKDCISLSSQIF-DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V +V+ + ++ + + + +I C+ + A K + EM Q +PD +Y
Sbjct: 272 EGVDFVLRVYREMRELGCQPNVVTCNTVIKLLCENGRIKEAYKMLDEMPQSYIAPDVFTY 331
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
CF C EK +++ +M E G P + T ++M + + V++KM+
Sbjct: 332 HCFFR--CLEKP-KEILCLFDQMIENGVCPRMDTYVMLMRKFGRWGFLRPVFLVWKKMEK 388
Query: 311 DDCLTDTSFYSSLI 324
C D Y++LI
Sbjct: 389 LGCSPDEFAYNALI 402
>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
Length = 374
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 119/274 (43%), Gaps = 20/274 (7%)
Query: 144 KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK 203
+ +G++ +I ++ + LA M L+ + ++D ++ V A K+
Sbjct: 109 RTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAA 168
Query: 204 F-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
K + L ++ L G C+ + D A+ + M + G P+ V+YT I +C++ D
Sbjct: 169 MEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGD 228
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
+ +EM EKG PSV+T +++H K I EA + ++M+ + D Y+S
Sbjct: 229 MVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYAS 288
Query: 323 LIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
L+ CV + ALKL +++++ +P+ + + +
Sbjct: 289 LVH----------------GHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEG 332
Query: 383 RMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
R + L +ML G++P +S + L L
Sbjct: 333 RSE---AAFQLYDDMLKAGLIPDDSLYSALVGSL 363
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 25/219 (11%)
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
S+S V++ G CK+ + D A++ + +M +HG S + + Y ++ Y R+KD +V
Sbjct: 11 SVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQE 70
Query: 269 TLKEMQEKGCKPSVITCT----------IVMHALEKAKQIYEAL-----KVYEKMKSDDC 313
L+ M+ +G + +V T V + +E ++ Y L K+ + ++
Sbjct: 71 ILEIMENEGIEATVGDGTCGGPPKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEML 130
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
L D + +I+NTMI C + +ALK++ +E+ + D T+
Sbjct: 131 LADMQGQGV-------GLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNT 183
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C R+ + +L++M EM G+VP T+ L
Sbjct: 184 LACGLCRVNRLDEAKTLLHIMIEM---GVVPNYVTYTTL 219
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 28/232 (12%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
+ + + VLI+G+CK + + A+ + +M G + + + I+ YCR+ VD L
Sbjct: 107 NERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKG---MVDDAL 163
Query: 271 K---EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI- 326
K M++ G + + T + L + ++ EA + M + + Y++LI I
Sbjct: 164 KIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIH 223
Query: 327 -----LSKAVRF-------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
+ +A R + YN MI + A + R+++E+ PD
Sbjct: 224 CKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDV 283
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
T+A + C ++ + L L EM +G P + L L K+
Sbjct: 284 YTYASLVHGHCVNGKVD---VALKLFEEMKQRGTEPNVVAYTALISGLAKEG 332
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 52/277 (18%), Positives = 101/277 (36%), Gaps = 47/277 (16%)
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQ------ 232
A SV++D L K V A ++ + +SL++ ++ L+ + + + Q
Sbjct: 16 AASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIM 75
Query: 233 ------------------KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
K + E +G P+ +Y I +C+ + L +MQ
Sbjct: 76 ENEGIEATVGDGTCGGPPKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQ 135
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
+G + I ++ + + +ALK+ M+ D Y++L L + R
Sbjct: 136 GQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLD 195
Query: 333 -----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++ Y T+IS C + A +L +++ E P T+ +
Sbjct: 196 EAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMI 255
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
K +++ +EM KG VP T+ L
Sbjct: 256 HGYAKKGSIREAE---RFRKEMEKKGFVPDVYTYASL 289
>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
Length = 637
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 129/317 (40%), Gaps = 40/317 (12%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI--------DELSNGYVSLAA 168
F WA G+ HT TY M+ LGK+++F M L++E+ D S AA
Sbjct: 213 FRWATASGGFTHTTITYCKMLLILGKTRQFESMVALLQEMGKAGTLSMDAFKVAIKSFAA 272
Query: 169 MSTV---------MRRLD----TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF 215
+ MR+ + + L+ L A +VF K S + +
Sbjct: 273 AGEIKNAVGVFELMRKNGFDDGVESFNCLLVALANEGLGREARQVFDKMLGQYSPDLRSY 332
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
L+ WC R A + EM + G PD V + IE R + + + M+
Sbjct: 333 TALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRQHEAVKMFELMKA 392
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335
KG P+V T T+++ K ++ A++ +E+M+ C D + Y+ L+ A R
Sbjct: 393 KGPPPNVWTYTMLICNHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDR 452
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
++ +++ + C PD T+ +K+ ++K D + +
Sbjct: 453 VTAVL----------------EEMTQKGCPPDARTYNALIKLLTNRKMPDD---AARIYK 493
Query: 396 EMLSKGIVPQESTHKML 412
+M+ KG+ P T+ M+
Sbjct: 494 KMIKKGLDPTIHTYNMM 510
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 109/297 (36%), Gaps = 48/297 (16%)
Query: 47 KFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDV----DKVSEILRKRY 102
K SPD + +W + L E R+ + L + + DV + +LR +
Sbjct: 320 KMLGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQ- 378
Query: 103 PSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE---- 158
+ EA+K F AK G TY ++ K K + E +E+ E
Sbjct: 379 ----RQHEAVKMFELMKAK---GPPPNVWTYTMLICNHCKRGKMDMAMECFEEMQEARCQ 431
Query: 159 --------LSNGYVSLAAMSTVMRRL----------DTRAMSVLMDTLVKRNSVAHAYKV 200
L GY + M V L D R + L+ L R A ++
Sbjct: 432 PDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMPDDAARI 491
Query: 201 FLKFKDCISLSSQIFDVLIHGWCKTRKS------DYAQK--AMKEMFQHGFSPDGVSYTC 252
+ K + + D IH + KS +YA +EM + G PD SYT
Sbjct: 492 YKK------MIKKGLDPTIHTYNMMMKSYFLGDRNYAMGCAVWEEMHRRGICPDVNSYTV 545
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
FI + R + ++EM KG K I C L KA ++ ++ +K+K
Sbjct: 546 FISGHIRHGRPEEAYKYIEEMINKGMKAPQIDCNKFAADLSKAGKLDMLYELAQKVK 602
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 127/284 (44%), Gaps = 42/284 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI-------DELSNGYV--SLAAMSTVMRRLDTR--- 179
TYN +++A GKSK+ +++L E+ + +++ + +L + + + LD
Sbjct: 833 TYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYEL 892
Query: 180 ----------AMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKS 228
L+D L+K A K+F + D +S I+++LI+G+ K+ +
Sbjct: 893 MSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEI 952
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D+A + K+M + G PD SYT +E C + +E++ G P ++ +
Sbjct: 953 DFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFI 1012
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR---------------- 332
++ L K++++ EAL ++ +MK+ D Y++LI L A +
Sbjct: 1013 INGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGL 1072
Query: 333 ---FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
YN +I + + A + +K+ C P+ ET A+
Sbjct: 1073 EPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQ 1116
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 123/285 (43%), Gaps = 30/285 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKA 234
D M L+ L KR A VF KF + + + ++ L+ G + ++ A +
Sbjct: 759 DDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALEL 818
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
++M G P+ +Y ++ + + K K+ EM+ +GC+P+ IT I++ AL K
Sbjct: 819 FEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVK 878
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLI 335
+ + +AL +Y ++ S D Y LI L KA R +I
Sbjct: 879 SNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVI 938
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
YN +I+ E A +L +K+ ++ +PD +++ ++ C R+ + +
Sbjct: 939 YNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEA---VQYFE 995
Query: 396 EMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQRT 440
E+ G+ P ++ + L K R+DE L+ +E +
Sbjct: 996 ELKLTGLDPDTVSYNFIINGLGK------SRRLDEALSLFSEMKN 1034
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 95/431 (22%), Positives = 180/431 (41%), Gaps = 63/431 (14%)
Query: 53 SPDEDFV-IPSLASW-VESLKLNEQSRISSHALSE----DHETDVDKVSEILRKRYP--- 103
P +FV I +L++ + +LK + +R+ A +H+ D+ V+ RK+
Sbjct: 37 GPTTNFVKIKTLSNGSLLNLKKHGTTRVGHRAFRTITRCNHDNDLVVVNNGKRKKNKTSV 96
Query: 104 SPDKVVEALKCF-----CFTWAKTQ---TGYMHTPETYNAMVEALGKSKKFGLMWELVKE 155
S ++V+ LK F++ K T ++HT + N M+E L + ++ + ++V
Sbjct: 97 SEEEVMTILKSISDPNSAFSYFKIVSQLTNFVHTTDACNYMLEILREQRR---IEDMVFV 153
Query: 156 IDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQI 214
D L + R L T + L + + A K + L++
Sbjct: 154 FD--------LMQKKVIYRNLTTYM--TIFKALSIKGGIGRAPFALRKMTEVGFILNAYS 203
Query: 215 FDVLIH----GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ LIH G+C + A K K M G P +Y+ + R D RK+ L
Sbjct: 204 YNGLIHLLLPGFC-----NEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLL 258
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
+EM+ G +P++ T TI + AL +A++I +A ++++M + C D Y+ LI L A
Sbjct: 259 EEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAA 318
Query: 331 VRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+ + Y T++ + + ++E D PD T+
Sbjct: 319 GKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTY 378
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK-MLAEELEKKSLGNAKERIDE 430
++ C + +L++M +KGI P T+ M+ L+ + L A E ++
Sbjct: 379 TILIEALCKSGDVDRAFDMLDVMT---TKGIFPNLHTYNTMICGLLKARRLDEALELLEN 435
Query: 431 LLTHATEQRTF 441
+ + + F
Sbjct: 436 MESLGVKPTAF 446
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 106/266 (39%), Gaps = 31/266 (11%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
T G TYN M+ L K+++ EL++ ++ L V A S V+
Sbjct: 402 TTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLG---VKPTAFSYVL-------- 450
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+D K A A F K I S + ++ +T + A+ ++ +
Sbjct: 451 --FIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHK 508
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G SPD V+Y ++ Y + K L EM KGC+P V+ +++ L KA ++
Sbjct: 509 CGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDA 568
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A K++ ++K+ L A + YN +++ + AL+L +
Sbjct: 569 AWKMFGRLKN----------------LKLAPTVVTYNILLTGLGKEGKILKALELFGSMT 612
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKD 386
E C P+ T SL C K D
Sbjct: 613 ESGCPPNTITF-NSLLDCLSKNDAVD 637
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 20/224 (8%)
Query: 128 HTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
H+P+ TY +++ GK + E++ +GY D ++L+
Sbjct: 336 HSPDRVTYITLMDKFGKVGDLETVKRFWNEME--VDGYAP-----------DVVTYTILI 382
Query: 186 DTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
+ L K V A+ + + I + ++ +I G K R+ D A + ++ M G
Sbjct: 383 EALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVK 442
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P SY FI++Y + D K T + M+++G PS+ C ++ L + +I EA +
Sbjct: 443 PTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDI 502
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRF----LIYNTMISSAC 344
+ + D+ Y+ L+ SKA + + + MIS C
Sbjct: 503 FNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGC 546
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 86/197 (43%), Gaps = 24/197 (12%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
YN ++ GKS + EL K+ M R D ++ ++L++ L
Sbjct: 939 YNILINGFGKSGEIDFACELFKK-------------MVKEGIRPDLKSYTILVECLCITG 985
Query: 193 SVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
+ A + F + K + + ++ +I+G K+R+ D A EM G SPD +Y
Sbjct: 986 RIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYN 1045
Query: 252 CFIEHYCREKDFRKVDYTLK---EMQEKGCKPSVITCTIVM--HALEKAKQIYEALKVYE 306
I H KVD +K E+Q G +PSV T ++ H+L K +A V++
Sbjct: 1046 ALILHLGIAG---KVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKD--QAFSVFK 1100
Query: 307 KMKSDDCLTDTSFYSSL 323
KM C +T ++ L
Sbjct: 1101 KMMVVGCSPNTETFAQL 1117
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I + LI+ K + D A K + +P V+Y + +E K M
Sbjct: 552 IINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSM 611
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
E GC P+ IT ++ L K + ALK++ +M +C D Y+++I+ L + R
Sbjct: 612 TESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGR 670
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 107/256 (41%), Gaps = 54/256 (21%)
Query: 59 VIPSLASWVESL-KLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCF 117
++PS+A+ SL L E RIS +ED D+ K SPD V
Sbjct: 476 IMPSIAACNASLYTLAETGRISE---AEDIFNDLHKCGL-------SPDSV--------- 516
Query: 118 TWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD 177
TYN +++ K+ + +L+ E+ +S G D
Sbjct: 517 --------------TYNMLMKCYSKAGQIDKATQLLSEM--ISKGC-----------EPD 549
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
++ L++TL K V A+K+F + K+ ++ + +++L+ G K K A +
Sbjct: 550 VMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFG 609
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK---EMQEKGCKPSVITCTIVMHALE 293
M + G P+ +++ ++ C K+ VD LK M C P V+T +++ L
Sbjct: 610 SMTESGCPPNTITFNSLLD--CLSKN-DAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLI 666
Query: 294 KAKQIYEALKVYEKMK 309
+ +I A + +MK
Sbjct: 667 REGRIDYAFWFFHQMK 682
>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 583
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 127/295 (43%), Gaps = 41/295 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN+++ L + K ++E +L + V L ++ + L++ K+
Sbjct: 310 TYNSLINGLCNNGK-------LEEAIDLWDKMVGLGLKPNIV------TYNALINGFCKK 356
Query: 192 NSVAHAYKVFLKFKDCISLSSQI-----FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
+ A KVF D +S + F+ +I +CK + M G P+
Sbjct: 357 KMMKEATKVF----DDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPN 412
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
+Y C I CR++D + L EM+ KG K V+T I++ L K + A K+
Sbjct: 413 VSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLN 472
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
+M F L + YNT++ C+ + AL +R ++E++ +P
Sbjct: 473 EM----------------FNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQP 516
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ T+ +K C +++ +LN EML KG+ P +T+ ++ E+ +K
Sbjct: 517 NVVTYNVLIKGYCKINKLEAANGLLN---EMLEKGLNPNRTTYDIVRLEMLEKGF 568
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 127/283 (44%), Gaps = 31/283 (10%)
Query: 175 RLDTRAMSVLMDTLVKRNSVA---HAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYA 231
+L + + L+ LVK N + + YK +K + +L++ F++ I+G C+ K + A
Sbjct: 162 KLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNT--FNIFINGLCRAGKLNKA 219
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKD---FRKVDYTLKEMQEKGCKPSVITCTIV 288
+ A+++M G SP+ V+Y ++ YC+ K + +KEM P+ +T +
Sbjct: 220 EDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTL 279
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--------------- 333
+ K + + A K +E+M+ + Y+SLI L +
Sbjct: 280 IDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGL 339
Query: 334 ----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ YN +I+ C + A K+ + + P+ T + C + M++G
Sbjct: 340 KPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEG-- 397
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
+L ML +GI+P ST+ L L K+ L AKE ++E+
Sbjct: 398 -FSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEM 439
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 26/256 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKV--FLK--FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
+ L+D KR S YK F+K + I + F+ LI G+CK A+KA +E
Sbjct: 239 NTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEE 298
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M + G P+ V+Y I C + +M G KP+++T +++ K K
Sbjct: 299 MQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKM 358
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLI------------FILSKAV-------RFLIYNT 338
+ EA KV++ + + + + ++++I F L ++ YN
Sbjct: 359 MKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNC 418
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+I+ C + + A +L ++E K D T+ + C + ++ +LN EM
Sbjct: 419 LIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLN---EMF 475
Query: 399 SKGIVPQESTHKMLAE 414
+ G+ P T+ L +
Sbjct: 476 NLGLKPNHVTYNTLMD 491
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 108/262 (41%), Gaps = 27/262 (10%)
Query: 184 LMDTLVK--RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+D+ VK +++V+ + L ++ I D+L+ + K + A +A +
Sbjct: 100 FLDSFVKNEKHTVSSVFHSLLLDGGRPGATALIIDMLVLAYVKNLELHCAYEAFTRAKDY 159
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
GF S + +E V+Y KEM ++ ++ T I ++ L +A ++ +A
Sbjct: 160 GFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKA 219
Query: 302 LKVYEKMKSDDCLTDTSFYSSLI---------FILSKAVRFL-------------IYNTM 339
E MK+ + Y++L+ + KA F+ +NT+
Sbjct: 220 EDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTL 279
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I C A K +++++ KP+ T+ + C+ ++++ ++L +M+
Sbjct: 280 IDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEA---IDLWDKMVG 336
Query: 400 KGIVPQESTHKMLAEELEKKSL 421
G+ P T+ L KK +
Sbjct: 337 LGLKPNIVTYNALINGFCKKKM 358
>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
Length = 353
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 119/262 (45%), Gaps = 21/262 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++L+ L ++ V A +V + K + +S ++ L+H +CK +K D A + M
Sbjct: 101 NMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVS 160
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD VSY + CR + L ++++KGC P +I+ V+ L KA + E
Sbjct: 161 RGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKE 220
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
AL++ +M S D + Y+T+ + C +A++ K++
Sbjct: 221 ALELLNEMVSKGLQPD----------------IITYSTIAAGLCREDRIEDAIRAFGKVQ 264
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ +P+ + + C ++ ++L M+ G +P EST+ +L E L +
Sbjct: 265 DMGIRPNTVLYNAIILGLCKRRETHS---AIDLFAYMIGNGCMPNESTYTILIEGLAYEG 321
Query: 421 L-GNAKERIDELLTHATEQRTF 441
L A++ +DEL + +++
Sbjct: 322 LIKEARDLLDELCSRGVVRKSL 343
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 119/247 (48%), Gaps = 23/247 (9%)
Query: 190 KRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
KR+ A K+ + +D + ++V+++G C+ + D A + +K + +G P+ V
Sbjct: 4 KRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTV 63
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
SY ++ C + + + + EM +KGC P+V+T +++ L + + AL+V E++
Sbjct: 64 SYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQI 123
Query: 309 KSDDCLTDTSFYSSLIFI------LSKAVRFL-------------IYNTMISSACVRSEE 349
C ++ Y+ L+ + KA+ FL YNT++++ C E
Sbjct: 124 PKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEV 183
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
A++L ++++ C P ++ + + K+ + +LN EM+SKG+ P T+
Sbjct: 184 DVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLN---EMVSKGLQPDIITY 240
Query: 410 KMLAEEL 416
+A L
Sbjct: 241 STIAAGL 247
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 19/194 (9%)
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
CK A K + EM G +PD V+Y + C+E LK + GC+P+
Sbjct: 3 CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 62
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISS 342
++ IV+ L A++ +A ++ +M C + + +N +IS
Sbjct: 63 VSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNV----------------VTFNMLISF 106
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C + AL++ ++I + C P+ ++ L C +K+M M L+L M+S+G
Sbjct: 107 LCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDL---MVSRGC 163
Query: 403 VPQESTHKMLAEEL 416
P ++ L L
Sbjct: 164 YPDIVSYNTLLTAL 177
>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
Length = 791
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 136/312 (43%), Gaps = 50/312 (16%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYV--SLAAMSTVMRRLDTRAMSVLMDTLV 189
TYN++++ L K+ G E K D ++ + +A T+++ T+ V M L+
Sbjct: 303 TYNSLMDYLCKN---GRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALL 359
Query: 190 KRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
L ++ I +F++LI + K K D A +M QHG +P+ V+
Sbjct: 360 D-----------LMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVT 408
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL------EKAKQIYEALK 303
Y I C+ ++M ++G P++I T ++H+L +KA+++
Sbjct: 409 YGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEEL----- 463
Query: 304 VYEKMKSDDCLTDTSFYSSLIF-------------ILSKAVRF------LIYNTMISSAC 344
+ E + CL +T F++S+I + VR + Y+T+I C
Sbjct: 464 ILEMLDRGICL-NTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYC 522
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ + A KL + KPDC T+ + C RM D L L +EM+S G+ P
Sbjct: 523 LAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDD---ALALFKEMVSSGVSP 579
Query: 405 QESTHKMLAEEL 416
T+ ++ + L
Sbjct: 580 NIITYNIILQGL 591
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 87/219 (39%), Gaps = 24/219 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G+C K D A K + MF G PD V+Y I YCR KEM
Sbjct: 514 YSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMV 573
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
G P++IT I++ L ++ A ++Y + + S
Sbjct: 574 SSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELS---------------- 617
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK-MCCHKKRMKDGMLVLNL 393
YN ++ C + AL++ Q + C D + R+ M ++ +L
Sbjct: 618 TYNIILHGLCKNNLTDEALRMFQNL----CLTDLQLETRTFNIMIGALLKVGRNDEAKDL 673
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
S G+VP T++++AE + + L E +D+L
Sbjct: 674 FVAFSSNGLVPNYWTYRLMAENIIGQGL---LEELDQLF 709
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 112/283 (39%), Gaps = 36/283 (12%)
Query: 168 AMSTVMRRL-------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ----IFD 216
AM V+RR+ D + ++L+ L N A ++ D S +
Sbjct: 141 AMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYT 200
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
+I+G+ K SD A EM SPD V+Y+ I C+ + K L M +
Sbjct: 201 TVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKN 260
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336
G P+ +T ++H ++Q EA+ +KM+SD D + Y
Sbjct: 261 GVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDV----------------VTY 304
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N+++ C A K+ + + +PD T+ L+ K + + +L+L
Sbjct: 305 NSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDL--- 361
Query: 397 MLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQR 439
M+ GI P +L K +E++DE + ++ R
Sbjct: 362 MVRNGIHPDHHVFNILICAYAK------QEKVDEAMLVFSKMR 398
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 107/242 (44%), Gaps = 26/242 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR-KVDYTLKEM 273
+ +LI C+ + D A+ + + GF + +++T ++ C +K +D L+ M
Sbjct: 90 YGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD-------DCLTDTSF------- 319
E C P V +CTI++ L + EAL++ M D D ++ T+
Sbjct: 150 TELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKE 209
Query: 320 ------YSSLIFILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
YS+ +L + + + Y+++I++ C A+++ + ++ P+C T+
Sbjct: 210 GDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTY 269
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431
L C ++ K+ + +++M S G+ P T+ L + L K +I +
Sbjct: 270 NSILHGYCSSEQPKE---AIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDS 326
Query: 432 LT 433
+T
Sbjct: 327 MT 328
>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
Length = 894
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 136/320 (42%), Gaps = 44/320 (13%)
Query: 125 GYMHTPETYNAMVEALGK----SKKFGLMWELVKEIDELSNGYVSLAAMSTVMR-RLDTR 179
G M T TY A++ LG+ +K L+WE+ KE N + + + + R ++
Sbjct: 341 GIMPTVVTYGAIIHWLGRKSDLTKIESLLWEM-KERGLSPNVQIYNTVIYALCKCRSASQ 399
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
A++VL + R D ++ F+ LI +C+ + A K ++E
Sbjct: 400 ALAVLNQMVASRFD-----------PDVVT-----FNTLIAAFCREGDVEEALKLLREAI 443
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ P+ +SYT I +C + L EM +G P V+T ++H L + Q+
Sbjct: 444 RRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVD 503
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIF------ILSKAVRFL-------------IYNTMI 340
EAL V EKM + D + Y+ LI +LS A L +Y T+I
Sbjct: 504 EALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLI 563
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+ +A K+ + +EE D + +K C M + ++ ++ MR++
Sbjct: 564 DGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKV--- 620
Query: 401 GIVPQESTHKMLAEELEKKS 420
G +P E T+ L + KK
Sbjct: 621 GCIPDEFTYTTLIDGYAKKG 640
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 22/219 (10%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
V++ G C + + ++ ++ + G P V Y I+ YCR D + L EM+ K
Sbjct: 281 VMVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMK 340
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------- 329
G P+V+T ++H L + + + + +MK + Y+++I+ L K
Sbjct: 341 GIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQA 400
Query: 330 --------AVRF----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
A RF + +NT+I++ C + ALKL ++ +P+ ++ +
Sbjct: 401 LAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHG 460
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C + + M+ +L+ EM+ +G P T L L
Sbjct: 461 FCVRGEV---MVASDLLVEMIGRGHTPDVVTLGALIHGL 496
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 23/248 (9%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++VLI G+C+ + EM G P V+Y I R+ D K++ L EM
Sbjct: 313 FYNVLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEM 372
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF-------- 325
+E+G P+V V++AL K + +AL V +M + D +++LI
Sbjct: 373 KERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDV 432
Query: 326 -----ILSKAVRF------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
+L +A+R L Y +I CVR E A L ++ PD T
Sbjct: 433 EEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGAL 492
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLT 433
+ ++ + ++V M E + ++P + + +L L +K+ L AK + E+L
Sbjct: 493 IHGLVVSGQVDEALMVREKMAE---RQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLE 549
Query: 434 HATEQRTF 441
+ F
Sbjct: 550 QKVQPDKF 557
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/266 (19%), Positives = 99/266 (37%), Gaps = 80/266 (30%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF------LKFKDCISLSSQIFDVLIHGWCKTRKSDY 230
D + L+D ++ + ++ A K+F ++D ++ ++ +I G+CK+ +
Sbjct: 555 DKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVA-----YNAMIKGYCKSGMMNE 609
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK-----------------VDYT---- 269
A M M + G PD +YT I+ Y ++ D + V Y
Sbjct: 610 AVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLIC 669
Query: 270 --------------LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL- 314
MQ +G P+V+ T+++ +L K + +A +E M + C
Sbjct: 670 GYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLNHCSP 729
Query: 315 --------------------------TDTSFYSSLIFILSKAV-------RFLIYNTMIS 341
TD + S + + K + R YN +I
Sbjct: 730 NDATMHYLVNGLTNCRYGMINSNCSDTDQAHKKSALLDVFKGLISDGLDPRISAYNAIIF 789
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPD 367
S C + G A++L++K+ C PD
Sbjct: 790 SLCRHNMLGKAMELKEKMSNKGCLPD 815
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 1/149 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D +VL+ L K+ ++ A + ++ + + ++ LI G+ ++ K A+K
Sbjct: 520 DANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIF 579
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ M + G D V+Y I+ YC+ + + M++ GC P T T ++ K
Sbjct: 580 EFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKK 639
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
I AL+ M C + Y+SLI
Sbjct: 640 GDIKAALRFLCDMMKRRCKPNIVTYASLI 668
>gi|359483659|ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
mitochondrial-like [Vitis vinifera]
Length = 686
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 108/240 (45%), Gaps = 24/240 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D +LM L N + A+K+ K + ++ I++ +IH CK K A+ M
Sbjct: 232 DDYTFGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYNTMIHALCKNGKVGRARSLM 291
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM + P V++ I YC+E++ + L++ G P V+T T V+ L KA
Sbjct: 292 NEMVE----PSDVTFNVLISAYCQEENLVQALVLLEKSFSMGFVPDVVTATKVVGILCKA 347
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI---FILSKAV---RFL-------------IY 336
++ E ++V E+++S + D Y++LI +L KA R L Y
Sbjct: 348 GRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLKDMEIKGCLPNVDTY 407
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N + S C +A+ L ++ D + T+ ++ C RM+DG +L LM E
Sbjct: 408 NILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGGRMEDGFKILELMEE 467
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 93/203 (45%), Gaps = 16/203 (7%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
YN+++ L K +F E + ++++L R R++ +L
Sbjct: 479 YNSIIYGLYKKNQFEEALEFLTKMEKL-------------FPRAVDRSLRIL--GFCNEG 523
Query: 193 SVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
S+ A +V+ + K+ S ++ LIHG+C+ A + + EM HG+ P ++
Sbjct: 524 SIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDHGYFPTAPTFN 583
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
I +C + +++M +GC P + + + ++ AL +A++++ +M
Sbjct: 584 ALISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEK 643
Query: 312 DCLTDTSFYSSLIFILSKAVRFL 334
D L D S ++S++ L++ +L
Sbjct: 644 DILPDYSTWNSMLLCLTQETVWL 666
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 84/194 (43%), Gaps = 21/194 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I+G K + + A + + +M P V + I +C E +M
Sbjct: 479 YNSIIYGLYKKNQFEEALEFLTKM--EKLFPRAVDRSLRILGFCNEGSIGDAKRVYDQMI 536
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
++G PSV+ ++H + + EA ++ +M D ++ +
Sbjct: 537 KEGGVPSVLVYVCLIHGFCQDGNVREAFELINEM------VDHGYFPTAP---------- 580
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+N +IS+ C + + G+ALKL + + C PD +++ + C+K + + L
Sbjct: 581 TFNALISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQK---AVRLF 637
Query: 395 REMLSKGIVPQEST 408
+M+ K I+P ST
Sbjct: 638 LQMVEKDILPDYST 651
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 117/310 (37%), Gaps = 79/310 (25%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI-DELSNGYVSL---AAMSTV 172
F WA ++H TY A++ L ++F E VKE+ DE+ + S + T+
Sbjct: 114 FRWASNLPNFIHNQSTYRALIHKLCSFRRF----ETVKEVLDEMPSSIGSPPDESIFVTI 169
Query: 173 MRRLD----TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS 228
+R L R M ++D L+ + + K+F + I DVL+ +
Sbjct: 170 VRGLGRARMVRQMIKVLD-LITKFGENPSLKIF----------NSILDVLVKEDIDLARE 218
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
Y +K M +G S D DYT I+
Sbjct: 219 FYRKK----MMMNGVSGD--------------------DYTFG---------------IL 239
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--------------- 333
M L +I +A K+ + MKS +T Y+++I L K +
Sbjct: 240 MKGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYNTMIHALCKNGKVGRARSLMNEMVEPSD 299
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ +N +IS+ C AL L +K PD T + + + C R+ +G+ VL
Sbjct: 300 VTFNVLISAYCQEENLVQALVLLEKSFSMGFVPDVVTATKVVGILCKAGRVTEGVEVLER 359
Query: 394 MREMLSKGIV 403
+ M G+V
Sbjct: 360 VESM--GGVV 367
>gi|413942671|gb|AFW75320.1| hypothetical protein ZEAMMB73_530230 [Zea mays]
Length = 542
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 124/291 (42%), Gaps = 32/291 (10%)
Query: 159 LSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAY--KVFLK-----FKDCISLS 211
L G V + +++ ++ LD ++ +V +V AY K L+ F D I+
Sbjct: 206 LLKGLVGIGDLNSALKVLDEMIGWGIVPDVVTYTTVLTAYCAKGDLEGAQQLFDDIIASG 265
Query: 212 ----SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ ++ VLI G+C RK A + M EM G P+ V+Y+ IE C+E+ +
Sbjct: 266 RRPDATMYTVLIDGYCHHRKLQDAARIMDEMGAAGVQPNEVTYSVVIEACCKERKSTEAR 325
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+EM G P C V+ L + + EA +++ +M D + S+LI+ L
Sbjct: 326 DLTREMLGAGYVPDTPLCAKVVDVLCQDGKAGEANEMWRQMVKKSVPPDNTVVSTLIYWL 385
Query: 328 SKA------------------VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
K L YN++I C E A ++ + E +P+
Sbjct: 386 CKKGMVQEARKLFDELERGFLPSLLTYNSLIIGLCENGELQEAGRVWDDMVERRYEPNAM 445
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
T+ +K C + +G L +EM+S+G P + ++ L + L K S
Sbjct: 446 TYEALIKGFCKIGKSNEGY---ALFKEMMSRGCTPSKFLYQALVDSLSKPS 493
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/272 (18%), Positives = 111/272 (40%), Gaps = 25/272 (9%)
Query: 163 YVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF--DVLIH 220
++SL + ++ R TR+ + L+ +LV + A +F + ++ + ++L+
Sbjct: 152 FLSLPSFNS---RPSTRSFNALLHSLVSARRLRLAAALFRAAPTKLYITPNLVSCNILLK 208
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G + A K + EM G PD V+YT + YC + D ++ G +P
Sbjct: 209 GLVGIGDLNSALKVLDEMIGWGIVPDVVTYTTVLTAYCAKGDLEGAQQLFDDIIASGRRP 268
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340
T+++ +++ +A ++ ++M + + + Y+ +I
Sbjct: 269 DATMYTVLIDGYCHHRKLQDAARIMDEMGAAGVQPNE----------------VTYSVVI 312
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+ C + A L +++ PD A+ + + C + + + R+M+ K
Sbjct: 313 EACCKERKSTEARDLTREMLGAGYVPDTPLCAKVVDVLCQDGKAGEAN---EMWRQMVKK 369
Query: 401 GIVPQESTHKMLAEELEKKSL-GNAKERIDEL 431
+ P + L L KK + A++ DEL
Sbjct: 370 SVPPDNTVVSTLIYWLCKKGMVQEARKLFDEL 401
>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 109/239 (45%), Gaps = 23/239 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+++I+G C+ + + + EM + G+ PD V+Y + YC+E +F + EM
Sbjct: 56 FNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMV 115
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILS 328
G P+V+T T +++++ KA + A++ +++M + Y+++I +L
Sbjct: 116 RNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLD 175
Query: 329 KAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+A R L YN +I+ CV A+ L Q + PD +++ +
Sbjct: 176 EAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTII 235
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLT 433
+ + + EM+ K ++P T+ L + L E++ L A + E+LT
Sbjct: 236 SGFARNQELDRA---FQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLT 291
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 139/322 (43%), Gaps = 37/322 (11%)
Query: 122 TQTGYMHTPETYNAMVEA---LGK-SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD 177
T++G++ + TYNA++ LG+ + GL+ ++V + G + D
Sbjct: 185 TRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGK------GVLP-----------D 227
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLK------FKDCISLSSQIFDVLIHGWCKTRKSDYA 231
+ S ++ + + A+++ ++ D ++ SS LI G C+ R+ A
Sbjct: 228 VVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSS-----LIQGLCEQRRLTEA 282
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
+EM PD +YT I YC+E D K + EM +KG P +T ++++
Sbjct: 283 CDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLING 342
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN 351
L K + EA ++ K+ DD + Y++LI + F ++ C++
Sbjct: 343 LNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCN-IEFKSAVALVKGFCMKGLMDE 401
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A ++ + + + KP+ + + C R+ + + L +EM+ VP T
Sbjct: 402 ADQVFESMINKNHKPNEAIYNVIIHGHC---RIGNVLKAYKLYKEMVHVDFVPHTVTVLA 458
Query: 412 LAEELEKKSL-GNAKERIDELL 432
L + L + + G E I ++L
Sbjct: 459 LVKALFTEGMDGELNEVIGDIL 480
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 126/300 (42%), Gaps = 33/300 (11%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
++ GY+ TYN +V K F LV + + NG +
Sbjct: 80 SRKGYVPDEVTYNTLVNGYCKEGNF--HQALVLHAEMVRNGLSP-----------NVVTY 126
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L++++ K ++ A + F + + + + + +I+G+ + D A + + EM +
Sbjct: 127 TSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTR 186
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
GF P V+Y I +C + L++M KG P V++ + ++ + +++
Sbjct: 187 SGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDR 246
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A ++ +M L D YSSLI L + R ++ AC +E +KL
Sbjct: 247 AFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRR-------LTEACDMFQEMLTIKL----- 294
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
PD T+ + C + + L+L EM+ KG +P T+ +L L K++
Sbjct: 295 ----PPDEFTYTTLINAYCKEGDLNKA---LHLHDEMIQKGFLPDAVTYNVLINGLNKQA 347
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 25/196 (12%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KEM ++G P+ V+Y I+ YC+ K + L+ M KG +P++IT ++++ L +
Sbjct: 7 KEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRD 66
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN---A 352
++ E +V +M + D + YNT+++ C +EGN A
Sbjct: 67 GRLKETSEVLVEMSRKGYVPDE----------------VTYNTLVNGYC---KEGNFHQA 107
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
L L ++ + P+ T+ + C + M +M +G+ P E T+ +
Sbjct: 108 LVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAM---EFFDQMHVRGLCPNERTYTTI 164
Query: 413 AEELEKKSLGNAKERI 428
++ L + R+
Sbjct: 165 INGFAQQGLLDEAYRV 180
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 38/211 (18%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH---------------YCR 259
++VLI+G K +S A++ + ++F P V+Y IE+ +C
Sbjct: 336 YNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCM 395
Query: 260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF 319
+ + D + M K KP+ +++H + + +A K+Y++M D + T
Sbjct: 396 KGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTV- 454
Query: 320 YSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE--DSCKPDCETHARSLKM 377
+ L KA+ EG +L + I + SCK ++ L
Sbjct: 455 ---TVLALVKAL---------------FTEGMDGELNEVIGDILRSCKLTDAELSKVLVE 496
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
K+ D +V NL+ EM G++P T
Sbjct: 497 INQKEGNMD--MVFNLLTEMAKDGLIPSTGT 525
>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
Length = 721
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 124/276 (44%), Gaps = 18/276 (6%)
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF 204
KF + +++E+ +S G++ DT S ++ L + V A+++F +
Sbjct: 202 KFEKAYNVIREM--MSKGFIP-----------DTSTYSKVIGYLCNASKVEKAFQLFQEM 248
Query: 205 K-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263
K + I+ ++ LI +CK + A+ EM + G +P+ V+YT I Y + +
Sbjct: 249 KRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKV 308
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC-LTDTSFYSS 322
K + + M KGC P+++T T ++ L KA +I +A ++Y+ MK ++ + D +
Sbjct: 309 SKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFR 368
Query: 323 LIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
++ S Y ++ C + A L + + + C+P+ + + CC
Sbjct: 369 VVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAG 428
Query: 383 RMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
++ + V M E G P T+ L + L K
Sbjct: 429 KLDEAQEVFTTMLEC---GYDPNVYTYSSLIDRLFK 461
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 117/276 (42%), Gaps = 25/276 (9%)
Query: 129 TPE--TYNAMVEAL---GKSKKFGLMWELVK-EIDELSNGYVSLAAMSTVMRRLDTRAMS 182
TP TY A+++ L GK +K +++++K E E+ + + + +
Sbjct: 324 TPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYG 383
Query: 183 VLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L+D L K V A + + + C + ++D LI G CK K D AQ+ M +
Sbjct: 384 ALVDGLCKAYQVKEARDLLKSMSVEGC-EPNHVVYDALIDGCCKAGKLDEAQEVFTTMLE 442
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G+ P+ +Y+ I+ ++K L +M E C P+V+ T ++ L K + E
Sbjct: 443 CGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE 502
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A K+ M+ C + Y+++I K+ R L+L Q++
Sbjct: 503 AYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRV----------------EKCLELLQQMS 546
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
C P+ T+ + CC + + +L M++
Sbjct: 547 SKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQ 582
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 101/248 (40%), Gaps = 25/248 (10%)
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKS-----DYAQ 232
R + L+ + A+AYK+ K C ++++LI G C + + D A+
Sbjct: 113 RIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAE 172
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
KA EM + G + V+ + F C F K ++EM KG P T + V+ L
Sbjct: 173 KAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYL 232
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA 352
A ++ +A +++++MK + D +Y T+I S C A
Sbjct: 233 CNASKVEKAFQLFQEMKRNGIAPDV----------------YVYTTLIDSFCKAGFIEQA 276
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
++E D C P+ T+ + +++ V + MLSKG P T+ L
Sbjct: 277 RNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEM---MLSKGCTPNIVTYTAL 333
Query: 413 AEELEKKS 420
+ L K
Sbjct: 334 IDGLCKAG 341
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 32/215 (14%)
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
H CK+ K ++A+ + + F PD V YT I C F + L M+ C
Sbjct: 18 HSLCKSGK---WREALSLLEKEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCL 74
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF-------------I 326
P+V+T I++ +++ ++ M ++ C ++SL+ +
Sbjct: 75 PNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKL 134
Query: 327 LSKAVR------FLIYNTMISSACVRSEEG-NALKLRQK-----IEEDSCKPDCETHARS 374
L K V+ +++YN +I C E G + L L +K +E S
Sbjct: 135 LKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFS 194
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
+C K K N++REM+SKG +P ST+
Sbjct: 195 RCLCGIGKFEK----AYNVIREMMSKGFIPDTSTY 225
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 47/187 (25%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ GY TY+++++ L K K+ L A+
Sbjct: 442 ECGYDPNVYTYSSLIDRLFKDKRLDL-------------------------------ALK 470
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
VL L NS A + I+ +I G CK K+D A K M M + G
Sbjct: 471 VLSKML--ENSCAP--------------NVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKG 514
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
+P+ V+YT I+ + + K L++M KGC P+ +T ++++ + EA
Sbjct: 515 CNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAH 574
Query: 303 KVYEKMK 309
K+ E+MK
Sbjct: 575 KLLEEMK 581
>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
salviifolia]
Length = 431
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 129/314 (41%), Gaps = 44/314 (14%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRL----DTRAMSVLM 185
+T ++E L K K F L+W +EI L GY SL + +M R D R +
Sbjct: 108 DTCRKVLEYLMKLKYFKLVWGFYEEI--LECGYPASLYFFNILMHRFCKDGDIRVAQSVF 165
Query: 186 DTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
D + K + S+ ++ L++G+ + D + M G P
Sbjct: 166 DAITKWG---------------LRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQP 210
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D +Y+ I +E D EM KG P+ +T T ++ K ++ A+++Y
Sbjct: 211 DVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIY 270
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVR 346
++M S L D Y++LI+ L K + Y T+I C
Sbjct: 271 KQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKE 330
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
+ +A + R+++ +++ + D + + C + R D ++REMLS G+ P
Sbjct: 331 GDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAE---KMLREMLSVGLNPDT 387
Query: 407 STHKMLAEELEKKS 420
T+ M+ E KK
Sbjct: 388 GTYTMIINEFCKKG 401
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 110/268 (41%), Gaps = 32/268 (11%)
Query: 157 DELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVF--LKF 204
+ L NGY+ L + R + D SVL++ L K + + A ++F +
Sbjct: 181 NTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLV 240
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
K + + F LI G CK + D A + K+M PD ++Y I C++ D +
Sbjct: 241 KGLVP-NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLK 299
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ + +M KG KP IT T ++ K + A + ++M ++ D
Sbjct: 300 QAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDD------- 352
Query: 325 FILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
++Y +IS C +A K+ +++ PD T+ + C K +
Sbjct: 353 ---------VVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDV 403
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKML 412
G L++EM G VP T+ +L
Sbjct: 404 WKGS---KLLKEMQRDGHVPSVVTYNVL 428
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
I L ++ LI G C+ +S A+K ++EM G +PD +YT I +C++ D K
Sbjct: 348 IRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGS 407
Query: 268 YTLKEMQEKGCKPSVITCTIVMHA 291
LKEMQ G PSV+T ++M+
Sbjct: 408 KLLKEMQRDGHVPSVVTYNVLMNG 431
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G CK D A + K M Q D V YT I C+E + L+EM
Sbjct: 320 YTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREML 379
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G P T T++++ K +++ K+ ++M+ D + Y+ L+
Sbjct: 380 SVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|338762831|gb|AEI98618.1| hypothetical protein 111O18.5 [Coffea canephora]
Length = 417
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 117/261 (44%), Gaps = 27/261 (10%)
Query: 184 LMDTLVKRNSVA----HAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEM 238
+ +L++ +A HA K F + D + S + F+ L+ ++ A + E+
Sbjct: 114 FLSSLIRSYGLAGMFDHALKTFNEMDDLGTPRSTVSFNALLSACNSSKNFGRAPELFDEV 173
Query: 239 FQ-HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
Q +G SPD SY I+ YC LKEM+EKG + + +T T +MH+ K +
Sbjct: 174 PQRYGLSPDKFSYGNLIKAYCEMGSPESALERLKEMEEKGIEITAVTFTTIMHSFYKKGK 233
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFIL----SKAVRFLI--------------YNTM 339
EA +V+ +M C D Y+ I + +V+ LI YN +
Sbjct: 234 NEEAERVWSEMVKRGCPIDVGAYNVRIMHIHGEDPDSVKGLIEEISSAGLKPDTISYNYL 293
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
++S C A K+ + +E + CKP+ T + C ++R + G V +E ++
Sbjct: 294 MTSYCKSGMMDEAFKVYEDLEGNGCKPNAATFRTLIFYLCKRQRFETGYKVF---KESVA 350
Query: 400 KGIVPQESTHKMLAEELEKKS 420
+P +T K L E L K+S
Sbjct: 351 VHKIPDFNTLKHLLEGLVKRS 371
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 31/236 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI--------DELSNG-----YVSLAAMSTVMRRLD- 177
++NA++ A SK FG EL E+ D+ S G Y + + + + RL
Sbjct: 149 SFNALLSACNSSKNFGRAPELFDEVPQRYGLSPDKFSYGNLIKAYCEMGSPESALERLKE 208
Query: 178 ---------TRAMSVLMDTLVKRNSVAHAYKVFLKF--KDC-ISLSSQIFDVL-IHGWCK 224
+ +M + K+ A +V+ + + C I + + ++ IHG
Sbjct: 209 MEEKGIEITAVTFTTIMHSFYKKGKNEEAERVWSEMVKRGCPIDVGAYNVRIMHIHG--- 265
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
D + ++E+ G PD +SY + YC+ + ++++ GCKP+ T
Sbjct: 266 -EDPDSVKGLIEEISSAGLKPDTISYNYLMTSYCKSGMMDEAFKVYEDLEGNGCKPNAAT 324
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340
++ L K ++ KV+++ + + D + L+ L K +F MI
Sbjct: 325 FRTLIFYLCKRQRFETGYKVFKESVAVHKIPDFNTLKHLLEGLVKRSKFKEAKGMI 380
>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 536
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 118/253 (46%), Gaps = 26/253 (10%)
Query: 184 LMDTLVKRNSVAHAYKVF---LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L++TLVK + V A K+F L+F+ C ++ F++LI G C K++ A + + M
Sbjct: 177 LLNTLVKLDRVEDAMKLFEEHLRFQSCND--TKTFNILIRGLCGVGKAEKAVELLGGMSG 234
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ-EKGCKPSVITCTIVMHALEKAKQIY 299
G PD V+Y I+ +C+ + +K + +++ GC P V+T T ++ KA ++
Sbjct: 235 FGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQ 294
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
EA + DD L + +++ F N ++ E A ++R K+
Sbjct: 295 EA-----SVLLDDMLRLGIYPTNVTF-----------NVLVDGYAKAGEMHTAEEIRGKM 338
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
C PD T + C ++ G L EM ++G+ P T+ +L L K+
Sbjct: 339 ISFGCFPDVVTFTSLIDGYCRVGQVNQG---FRLWEEMNARGMFPNAFTYSILINALCKE 395
Query: 420 S-LGNAKERIDEL 431
+ L A+E + +L
Sbjct: 396 NRLLKARELLGQL 408
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 137/309 (44%), Gaps = 42/309 (13%)
Query: 124 TGYMHTPE--TYNAMVEALGKS---KKFGLMWELVKEIDELSNGYVSLAAM-STVMRRLD 177
+G+ P+ TYN +++ KS KK M++ VK S V+ +M S +
Sbjct: 233 SGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGK 292
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
+ SVL+D +++ I ++ F+VL+ G+ K + A++ +
Sbjct: 293 MQEASVLLDDMLRLG---------------IYPTNVTFNVLVDGYAKAGEMHTAEEIRGK 337
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M G PD V++T I+ YCR + +EM +G P+ T +I+++AL K +
Sbjct: 338 MISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENR 397
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
+ +A ++ ++ S D + +YN +I C + A+ + +
Sbjct: 398 LLKARELLGQLASKDIIPQP----------------FMYNPVIDGFCKAGKVNEAIVIVE 441
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
++E+ CKPD T + C K RM + +++ +M++ G P + T L L
Sbjct: 442 EMEKKKCKPDKITFTILIIGHCMKGRMFE---AVSIFHKMVAIGCSPDKITVSSLLSCLL 498
Query: 418 KKSLGNAKE 426
K G AKE
Sbjct: 499 KA--GMAKE 505
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 20/192 (10%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR---RLDT 178
+ G MHT E E GK FG ++V L +GY + ++ R ++
Sbjct: 323 AKAGEMHTAE------EIRGKMISFGCFPDVVT-FTSLIDGYCRVGQVNQGFRLWEEMNA 375
Query: 179 RAM-------SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSD 229
R M S+L++ L K N + A ++ L KD I +++ +I G+CK K +
Sbjct: 376 RGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIP-QPFMYNPVIDGFCKAGKVN 434
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
A ++EM + PD +++T I +C + + +M GC P IT + ++
Sbjct: 435 EAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLL 494
Query: 290 HALEKAKQIYEA 301
L KA EA
Sbjct: 495 SCLLKAGMAKEA 506
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 101/252 (40%), Gaps = 33/252 (13%)
Query: 201 FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
F +FK I S +++L CK D A + + M G SP+ + + +
Sbjct: 92 FSRFKLNIRHSFWTYNLLTRSLCKAGMHDLAGQMFECMKSDGISPNSRLLGFLVSSFAEK 151
Query: 261 KDFR-KVDYTLKEMQEKGCKPSVITCTIV---MHALEKAKQIYEALKVYEKMKSDDCLTD 316
L+ + +GC C +V ++ L K ++ +A+K++E+ D
Sbjct: 152 GKLHCATALLLQSYEVEGC------CMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCND 205
Query: 317 TSFYSSLIFIL------SKAVRFL-------------IYNTMISSACVRSEEGNALKLRQ 357
T ++ LI L KAV L YNT+I C +E A ++
Sbjct: 206 TKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFD 265
Query: 358 KIEEDS-CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ S C PD T+ + C +M++ ++L+ +ML GI P T +L +
Sbjct: 266 DVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLD---DMLRLGIYPTNVTFNVLVDGY 322
Query: 417 EKKSLGNAKERI 428
K + E I
Sbjct: 323 AKAGEMHTAEEI 334
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 155/353 (43%), Gaps = 47/353 (13%)
Query: 125 GYMHTPETYNAMVEALGKSKKF-----GLMWELVKE--------IDELSNGYVSLAAMST 171
G+M +YNA+++A+ ++K+ G+ E+V+ + L G+ + +
Sbjct: 162 GFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEM 221
Query: 172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIH 220
+ + + +V N++ AY K + L + ++V+I+
Sbjct: 222 GLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVIN 281
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G C+ + + ++EM + + PD V++ I YC +F + EM + G P
Sbjct: 282 GLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSP 341
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILSKAVR-- 332
+V+T T +++++ KA + A++ ++M+ + Y++LI L +A +
Sbjct: 342 NVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIM 401
Query: 333 -----------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
+ YN +I+ C+ +A L Q++ E PD +++ + C
Sbjct: 402 KEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRN 461
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLT 433
+ ++ L EM++KGI P +T+ L + L +++ LG + E+L+
Sbjct: 462 QELEKA---FQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLS 511
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 148/350 (42%), Gaps = 47/350 (13%)
Query: 88 ETDVDKVSEILR---KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSK 144
E + + SEIL KR PD+V T+ GY + + A+V +
Sbjct: 286 EGQMKETSEILEEMSKRRYVPDRV---------TFNTLINGYCNVGNFHQALVLH-AEMV 335
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD----------TRAMSVLMDTLVKRNSV 194
K GL +V L N ++ M LD R + L+D ++ +
Sbjct: 336 KNGLSPNVVT-YTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFL 394
Query: 195 AHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
AY++ + ++ + + ++ LI+G C + + A ++EM + GF PD VSY+
Sbjct: 395 KQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTI 454
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I +CR ++ K EM KG P V T + ++ L K +++ E ++++M S
Sbjct: 455 ISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGL 514
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
D Y+SL I++ C+ + AL+L ++ + PD T+
Sbjct: 515 PPDEVTYTSL----------------INAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNV 558
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE---ELEKKS 420
+ + R K+ L+ ++L + VP E T+ L + LE KS
Sbjct: 559 LINGFNKQSRTKEAK---RLLLKLLYEESVPNEITYNTLIDNCNNLEFKS 605
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 75/358 (20%), Positives = 147/358 (41%), Gaps = 69/358 (19%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVK--EIDELSNGYVSL-AAMSTVM 173
F + G + TYN +++A K +K G ++L++ + L+ +S ++ +
Sbjct: 225 FFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLC 284
Query: 174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQK 233
R + S +++ + KR V D ++ F+ LI+G+C A
Sbjct: 285 REGQMKETSEILEEMSKRRYVP----------DRVT-----FNTLINGYCNVGNFHQALV 329
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
EM ++G SP+ V+YT I C+ + + L +M+++G P+ T T ++
Sbjct: 330 LHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFS 389
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAV-RFLI---- 335
+ + +A ++ ++M + Y++LI +L + + R I
Sbjct: 390 QQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVV 449
Query: 336 -YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD------GM 388
Y+T+IS C E A +L+ ++ PD T++ ++ C ++R+ + M
Sbjct: 450 SYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEM 509
Query: 389 LVLNL-----------------------MR---EMLSKGIVPQESTHKMLAEELEKKS 420
L L L +R EM+ KG P T+ +L K+S
Sbjct: 510 LSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQS 567
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 20/203 (9%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV-DYT 269
SS +FD+++ + + A + +GF P +SY ++ R K K+ +
Sbjct: 131 SSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGI 190
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
KEM E G P+V T I++ A + L + +M+ + CL +
Sbjct: 191 FKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNV------------ 238
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ YNT+I + C + G A KL + + P+ ++ + C + +MK+
Sbjct: 239 ----VTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKE--- 291
Query: 390 VLNLMREMLSKGIVPQESTHKML 412
++ EM + VP T L
Sbjct: 292 TSEILEEMSKRRYVPDRVTFNTL 314
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 60/302 (19%), Positives = 129/302 (42%), Gaps = 64/302 (21%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI-------DELSNGYVSLAAMSTVMRRLDTRAMSVL 184
TY+++++ L K ++ G + +L +E+ DE++ Y SL + LD +A+ L
Sbjct: 485 TYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVT--YTSLINAYCIEGDLD-KALR-L 540
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
D ++++ S ++VLI+G+ K ++ A++ + ++
Sbjct: 541 HDEMIQKG---------------FSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESV 585
Query: 245 PDGVSYTCFIEH---------------YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
P+ ++Y I++ +C + + D L+ M +KG K + +++
Sbjct: 586 PNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVII 645
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE 349
H K I +A +Y++M + + +S I L+K++ E
Sbjct: 646 HGHSKVGNIEKAYNLYKEMLH----SGFAPHSVTIMALAKSLY---------------HE 686
Query: 350 GNALKLRQKIEED--SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
G ++L Q ++ SC+ A+ L K+ D V N++++M G++P S
Sbjct: 687 GKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMDA--VFNVLKDMALSGLLPYSS 744
Query: 408 TH 409
+
Sbjct: 745 AN 746
>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
Length = 2052
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 162/395 (41%), Gaps = 81/395 (20%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F W + GY HT +N ++E L +++ +++ + S+ + ST++R
Sbjct: 1648 FEWCHGRHGYTHTAFAFNRLLEFLVNKRQYKRAHQMLIAESKPSSFQANAFTYSTIVRGY 1707
Query: 177 ----DTRAMSVLMDTLVKRNSVAHA--YKVFL-------KFKDCISLSSQI--------- 214
+TR L++ + K A+A Y + L K K+ + L +
Sbjct: 1708 CEDGETRQALALLEHMKKAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDI 1767
Query: 215 --FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFR-KVDYTL 270
+++LI+ CK + + AQ + EM Q P D V+Y I CR+ + R +V+
Sbjct: 1768 YTYNILINALCKVGRLEDAQ-GLVEMMQARECPTDIVTYNTLIHGLCRKGNGRFRVERAF 1826
Query: 271 K---EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--- 324
+ EM +KG P+ +T T+V+ AL + K +A KV + M + C D Y+ LI
Sbjct: 1827 RLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRF 1886
Query: 325 ---FILSKAVRFLI-------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
++ KA+ + YN+++ C + A KL +++ P+
Sbjct: 1887 AKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFPNG 1946
Query: 369 ETHARSLKMCCHKKRMKD-------------------------------GMLVLNLMREM 397
T+ C RM+D G L L+REM
Sbjct: 1947 RTYTSITDACLKAGRMQDAHAYLVEMRKEGLVDAISYVALISTICKLGKGKLGFQLLREM 2006
Query: 398 LSKGIVPQESTHKMLAEELEKKS-LGNAKERIDEL 431
L KG P T ++ E L K+S +AK I EL
Sbjct: 2007 LEKGFKPNLVTFNVVFEALSKESNTDDAKIMIQEL 2041
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/255 (18%), Positives = 98/255 (38%), Gaps = 52/255 (20%)
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF--DVLIHGWCKTRKSDYAQKAMKE 237
A + L++ LV + A+++ + S + F ++ G+C+ ++ A ++
Sbjct: 1663 AFNRLLEFLVNKRQYKRAHQMLIAESKPSSFQANAFTYSTIVRGYCEDGETRQALALLEH 1722
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M + + Y + H C+ ++ L M C P + T I+++AL K +
Sbjct: 1723 MKKAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGR 1782
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
+ +A + E M++ +C TD + YNT+I C +GN R
Sbjct: 1783 LEDAQGLVEMMQARECPTD----------------IVTYNTLIHGLC---RKGNG---RF 1820
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
++E L EM+ KG P T+ ++ + L
Sbjct: 1821 RVER----------------------------AFRLFEEMVDKGHTPTSVTYTVVIDALL 1852
Query: 418 KKSLGNAKERIDELL 432
+ + +++ +L+
Sbjct: 1853 RVKMDEQAQKVLDLM 1867
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 87/223 (39%), Gaps = 54/223 (24%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDEL--SNGYVSLAAMSTVMRRLDTRAMS 182
G+ T TY +++AL + K M E +++ +L NG D +
Sbjct: 1836 GHTPTSVTYTVVIDALLRVK----MDEQAQKVLDLMHENGCA-----------FDLVTYN 1880
Query: 183 VLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+L++ K + A +F++ + CI ++ ++ G+CK K + A K EM
Sbjct: 1881 MLINRFAKAGMMDKAMDLFVEMPTRGCIP-DVVTYNSIVDGFCKAGKVEEANKLFAEMKA 1939
Query: 241 HGFSPDG----------------------------------VSYTCFIEHYCREKDFRKV 266
G P+G +SY I C+ +
Sbjct: 1940 RGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLVDAISYVALISTICKLGKGKLG 1999
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
L+EM EKG KP+++T +V AL K +A + ++++
Sbjct: 2000 FQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDAKIMIQELR 2042
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK- 190
TYN++V+ K+ K V+E ++L A M + R + + D +K
Sbjct: 1913 TYNSIVDGFCKAGK-------VEEANKL------FAEMKARGIFPNGRTYTSITDACLKA 1959
Query: 191 -RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
R AHAY V ++ + + S + LI CK K + ++EM + GF P+ V+
Sbjct: 1960 GRMQDAHAYLVEMRKEGLVDAISYV--ALISTICKLGKGKLGFQLLREMLEKGFKPNLVT 2017
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
+ E +E + ++E++++ P
Sbjct: 2018 FNVVFEALSKESNTDDAKIMIQELRQQHSSP 2048
>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
nodiflora]
Length = 431
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 128/317 (40%), Gaps = 50/317 (15%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRL----DTRAMSVLM 185
+T ++E L K K F L+W +EI L GY SL + +M R D R +
Sbjct: 108 DTCRKVLEHLMKLKYFKLVWGFYEEI--LECGYPASLYFFNILMHRFCKEGDIRVAQSVF 165
Query: 186 DTLVK---RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
D + K R SV ++ L++G+ + D + M G
Sbjct: 166 DAITKWGLRPSVVS------------------YNTLMNGYIRLGDLDEGFRLKSAMHASG 207
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
PD +Y+ I C+E + EM EKG P+ +T T ++ K + A+
Sbjct: 208 VHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAM 267
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSA 343
++Y++M S L D Y++LI+ L K + Y T+I
Sbjct: 268 EIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGC 327
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C + A + R+ + +++ + D + + C + R D ++REMLS G+
Sbjct: 328 CKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLK 384
Query: 404 PQESTHKMLAEELEKKS 420
P T+ M+ E KK
Sbjct: 385 PDTRTYTMIINEFCKKG 401
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 14/161 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYNA++ L K +L+ E MS + D + L+D K
Sbjct: 284 TYNALIYGLCKKGDLKQAHDLIDE-------------MSMXGLKPDKITYTTLIDGCCKE 330
Query: 192 NSVAHAYK-VFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A++ + ++ I L + LI G C+ +S A+K ++EM G PD +Y
Sbjct: 331 GDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTY 390
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
T I +C++ D K LKEMQ G PSV+T ++M+
Sbjct: 391 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G CK D A + K M Q D V+YT I C+E + L+EM
Sbjct: 320 YTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREML 379
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G KP T T++++ K +++ K+ ++M+ D + Y+ L+
Sbjct: 380 SVGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 506
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 138/328 (42%), Gaps = 42/328 (12%)
Query: 135 AMVEALGKSKKFGL-MWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNS 193
AM+ GK K G+ + + I L NG +S L + + L+ T V N+
Sbjct: 138 AMLSLFGKYLKNGVTIGDYTCSI--LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNT 195
Query: 194 VAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
+ + Y + + S Q+ ++ LI+G CK + AQ + EM +G
Sbjct: 196 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 255
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
+P ++ I+ Y R K L EMQE G KP+V++ +++A K +I EA+
Sbjct: 256 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 315
Query: 303 KVYEKMKSDDCLTDTSFYSSLI------------FILSKAVR-------FLIYNTMISSA 343
+ + M D L + Y+++I FIL + ++ + YN +I
Sbjct: 316 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 375
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C +S+ A ++ + PD ++ + CC++ + L+L + M GI
Sbjct: 376 CNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDK---ALDLQQRMHKYGIK 432
Query: 404 PQESTHKMLAEELEKKSLGNAKERIDEL 431
T+ L LG A R++E+
Sbjct: 433 STVRTYHQLI-----SGLGGAG-RLNEM 454
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 122/302 (40%), Gaps = 16/302 (5%)
Query: 29 LCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHE 88
L N +C T EL G S ++ D + + + + L E+ + L E +
Sbjct: 196 LINGYCQTGELEGAFSTFGQMKSRHIKPDHI--TYNALINGLCKAERITNAQDLLMEMQD 253
Query: 89 TDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGL 148
V+ E + + + KCF + G +Y ++V A K+ K
Sbjct: 254 NGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK--- 310
Query: 149 MWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DC 207
+ E V +D++ + V A + + ++D V+ A+ + K K +
Sbjct: 311 IPEAVAILDDMFHKDVLPNA----------QVYNAIIDAYVEHGPNDQAFILVEKMKSNG 360
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS S +++LI G C + A++ + + H PD VSY I C + K
Sbjct: 361 ISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKAL 420
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ M + G K +V T ++ L A ++ E +Y+KM ++ + + ++ ++
Sbjct: 421 DLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAY 480
Query: 328 SK 329
SK
Sbjct: 481 SK 482
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 80/200 (40%), Gaps = 19/200 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++VL+ G C+ + + EM PDG +Y+ + R D + + +
Sbjct: 88 YNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYL 147
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ G TC+I+++ L K ++ A +V + L + + +
Sbjct: 148 KNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQS------LVNAGLVPTRV---------- 191
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
IYNT+I+ C E A +++ KPD T+ + C +R+ + +L+
Sbjct: 192 IYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQ---DLL 248
Query: 395 REMLSKGIVPQESTHKMLAE 414
EM G+ P T L +
Sbjct: 249 MEMQDNGVNPTVETFNTLID 268
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/297 (17%), Positives = 112/297 (37%), Gaps = 70/297 (23%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
G T ET+N +++A G++ +L ++ L+ M + + +
Sbjct: 254 NGVNPTVETFNTLIDAYGRTG-------------QLEKCFIVLSEMQENGLKPNVVSYGS 300
Query: 184 LMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+++ K + A + + KD + ++Q+++ +I + + +D A +++M +
Sbjct: 301 IVNAFCKNGKIPEAVAILDDMFHKDVLP-NAQVYNAIIDAYVEHGPNDQAFILVEKMKSN 359
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G SP V+Y I+ C + QI EA
Sbjct: 360 GISPSIVTYNLLIKGLCNQ-----------------------------------SQISEA 384
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
++ + + + D Y++LI S+ C R AL L+Q++ +
Sbjct: 385 EEIINSLSNHRLIPDAVSYNTLI----------------SACCYRGNIDKALDLQQRMHK 428
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
K T+ + + R+ + + L ++M+ +VP + H ++ E K
Sbjct: 429 YGIKSTVRTYHQLISGLGGAGRLNE---MEYLYQKMMQNNVVPSNAIHNIMVEAYSK 482
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 53/115 (46%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++V+I G + + A + EM + P+ ++Y I+ + + D +M
Sbjct: 18 YNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMV 77
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
G KP+ IT +++ L +A ++ E + ++M S + D YS L LS+
Sbjct: 78 CHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 132
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 120/284 (42%), Gaps = 42/284 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI-------DELSNGYV--SLAAMSTVMRRLD----- 177
T+N ++ GKS K ++EL KE+ D ++ V SLA + + + LD
Sbjct: 825 TFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDL 884
Query: 178 --------TRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKS 228
R L+D L K + A ++F + D + IF++LI+G+ K +
Sbjct: 885 VSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDT 944
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+ A + K M G PD SYT ++ C + Y E++ G P I +
Sbjct: 945 ETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRI 1004
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR---------------- 332
++ L K++++ EAL +Y +M++ + D Y+SL+ L A
Sbjct: 1005 INGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGL 1064
Query: 333 ---FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
YN +I + +A + + + D C P+ T+A+
Sbjct: 1065 EPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQ 1108
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 137/325 (42%), Gaps = 46/325 (14%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+TY+A++ ALGK + ++ L+KE+++L R + ++ + L +
Sbjct: 228 KTYSALMVALGKKRDSEMVMVLLKEMEDLG-------------LRPNVYTFTICIRVLGR 274
Query: 191 RNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ AY++F + D + VLI C + + A++ +M +G PD V
Sbjct: 275 AGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVI 334
Query: 250 YTCFIEHYCREKDFRKVDYTLKE----MQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
Y ++ + DF +D T KE M+ G P V+T TI++ L KA+ EA +
Sbjct: 335 YITLLDKF---NDFGDLD-TFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATF 390
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVR 346
+ M+ L + Y++LI L +A R YN I
Sbjct: 391 DVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKS 450
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
E G A++ +K++ P+ SL R+++ + N +RE G+ P
Sbjct: 451 GETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRE---NGLAPDS 507
Query: 407 STHKMLAEELEKKSLGNAKERIDEL 431
T+ M+ + K +G E ++ L
Sbjct: 508 VTYNMMMKCYSK--VGQVDEAVNLL 530
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 131/310 (42%), Gaps = 44/310 (14%)
Query: 127 MHTPETYNAMVEAL---GKSKKFGLMWELVKE--IDELSNGYVSLAAMSTVMRRLDTRAM 181
+HT ET N M+E L K + ++E +++ I + Y+++ ++ R R M
Sbjct: 119 LHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSI--RGGLRQM 176
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+ +++ + K V +AY ++ LIH ++ A + + M
Sbjct: 177 TTVLNKMRKAGFVLNAYS---------------YNGLIHLLIQSGFCGEALEVYRRMVSE 221
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G P +Y+ + +++D V LKEM++ G +P+V T TI + L +A +I EA
Sbjct: 222 GLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEA 281
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISS 342
+++ +M + C D Y+ LI L A + +IY T++
Sbjct: 282 YEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDK 341
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
+ + ++E D PD T + + C + + ++MR+ +GI
Sbjct: 342 FNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRK---QGI 398
Query: 403 VPQESTHKML 412
+P T+ L
Sbjct: 399 LPNLHTYNTL 408
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 112/259 (43%), Gaps = 27/259 (10%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+ L K +AY++F KF + +S + ++ LI + ++ A K+M
Sbjct: 758 LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G +PD ++ + + + ++ KEM + CKP IT IV+ +L K+ + +A
Sbjct: 818 GCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKA 877
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
L + + S D Y LI L+K R EE A++L +++ +
Sbjct: 878 LDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRL--------------EE--AMRLFEEMSD 921
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
CKP+C + ++ D L + M+++GI P ++ +L + L
Sbjct: 922 YGCKPNCAIFNILIN---GYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAG- 977
Query: 422 GNAKERIDELLTHATEQRT 440
R+DE L + E ++
Sbjct: 978 -----RVDEALYYFNELKS 991
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 122/301 (40%), Gaps = 53/301 (17%)
Query: 119 WAKTQT-GYMHTPETYNAMVEALGKSKKF-------------GLMWEL---------VKE 155
W++ + GYM T+ +V+ L K++ F G++ L +
Sbjct: 355 WSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLR 414
Query: 156 IDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK------DCIS 209
+ + L M +V + ++ +D K A + F K K + ++
Sbjct: 415 AGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVA 474
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
++ ++ + G + K+ + ++E +G +PD V+Y ++ Y + +
Sbjct: 475 CNASLYSLAEMGRLREAKTMF--NGLRE---NGLAPDSVTYNMMMKCYSKVGQVDEAVNL 529
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
L EM GC+P VI ++ +L KA ++ EA +++++MK Y++L+ L K
Sbjct: 530 LSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGK 589
Query: 330 AVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
R + +NT++ C E ALK+ K+ CKPD T
Sbjct: 590 EGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLT 649
Query: 371 H 371
+
Sbjct: 650 Y 650
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 89/234 (38%), Gaps = 23/234 (9%)
Query: 113 KCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LS 160
K F + + + TP TY +++ L K + L +E+ + L
Sbjct: 876 KALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILI 935
Query: 161 NGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-IS 209
NGY + T + R D ++ ++L+D L V A F + K +
Sbjct: 936 NGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLD 995
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
++ +I+G K+++ + A EM G PD +Y + + +
Sbjct: 996 PDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRM 1055
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+E+Q G +P V T ++ ++ A VY+ M D C + Y+ L
Sbjct: 1056 YEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 85/191 (44%), Gaps = 20/191 (10%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL---DTR 179
+ G TYN M++ K V ++DE N +S ++R D
Sbjct: 500 ENGLAPDSVTYNMMMKCYSK----------VGQVDEAVN------LLSEMIRNGCEPDVI 543
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
++ L+D+L K V A+++F + KD +S + ++ L+ G K + A + + M
Sbjct: 544 VVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESM 603
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
+ SP+ +S+ ++ +C+ + +M CKP V+T V++ L K ++
Sbjct: 604 IEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKV 663
Query: 299 YEALKVYEKMK 309
A + ++K
Sbjct: 664 NHAFWFFHQLK 674
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 90/230 (39%), Gaps = 25/230 (10%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWE---------LVKEIDELSNGYVSLAAMSTVMR 174
G T TYN ++ GKS + G E +V I + SLA M +R
Sbjct: 431 VGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGR-LR 489
Query: 175 RLDTRAMSVLMDTL----VKRNSVAHAYKVFLKFKDCISLSSQ-----------IFDVLI 219
T + + L V N + Y + + ++L S+ + + LI
Sbjct: 490 EAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLI 549
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
K + D A + M SP V+Y + +E +K + M EK C
Sbjct: 550 DSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCS 609
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
P+ I+ ++ K ++ ALK++ KM DC D Y+++I+ L K
Sbjct: 610 PNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIK 659
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/315 (20%), Positives = 131/315 (41%), Gaps = 63/315 (20%)
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMK 236
+V +++ + + K D I L +++ F++L++ +CK K +
Sbjct: 260 VVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFD 319
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M + G P+ V+Y ++ YC K+ K M + G P + + +I+++ K K
Sbjct: 320 MMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIK 379
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYN 337
+ EA+ ++++M + + D YSSLI LSK+ R YN
Sbjct: 380 KFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYN 439
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD------GMLV- 390
+++ + C + A+ L K+++ +P+ T++ +K C +++D G+LV
Sbjct: 440 SILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVK 499
Query: 391 -------------------------LNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAK 425
L L+ +M G +P T++++ L KK +
Sbjct: 500 GHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMA 559
Query: 426 ER-IDELLTHATEQR 439
E+ + E++ R
Sbjct: 560 EKLLREMIARGVRPR 574
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 28/216 (12%)
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK- 271
Q + ++I+G+CK +K D A KEM + PD V+Y+ I+ + ++ Y L+
Sbjct: 366 QSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSG---RISYALQL 422
Query: 272 --EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
+M ++G P++ T ++ AL K Q+ +A+ + K+K + YS LI L +
Sbjct: 423 VDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQ 482
Query: 330 AVR----------FLI---------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ + L+ Y MI CV AL L K+E++ C PD +T
Sbjct: 483 SGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKT 542
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
+ + + KK D + L+REM+++G+ P++
Sbjct: 543 Y-EIIILSLFKKDEND--MAEKLLREMIARGVRPRQ 575
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 98/218 (44%), Gaps = 22/218 (10%)
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
++LI+ +C+ +A ++ + G+ PD +++T I+ C + ++ ++
Sbjct: 124 NILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVA 183
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI----------- 324
G I+ ++H L K + AL + +++ + + Y+++I
Sbjct: 184 LGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNE 243
Query: 325 -F-----ILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
F ++SK + + Y+ +IS C+ + +A+ L K+ ++ KPD T +
Sbjct: 244 AFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVN 303
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
C +MK+G V ++ M+ +GI P T+ L +
Sbjct: 304 AFCKDGKMKEGKTVFDM---MMKQGIKPNFVTYNSLMD 338
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 84/203 (41%), Gaps = 22/203 (10%)
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A + + +P + + + K + V Y ++M+ +G KP+++ C I+
Sbjct: 67 DDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNIL 126
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------------FILSKAVRFL-- 334
++ + I A V+ K+ + DT +++LI F+ V L
Sbjct: 127 INCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGF 186
Query: 335 -----IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
Y T+I C E AL L Q+++ + +P+ + + C K + +
Sbjct: 187 HFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEA-- 244
Query: 390 VLNLMREMLSKGIVPQESTHKML 412
+L EM+SKGI P T+ L
Sbjct: 245 -FDLFSEMISKGISPDVVTYSAL 266
>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
macrostachya]
Length = 414
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 122/279 (43%), Gaps = 31/279 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L AM + D SVL++ L K + +
Sbjct: 153 KWGLRPSVV-SFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKM 211
Query: 195 AHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A ++F + D + + F LI G CK+ + D A + K+M SPD ++Y
Sbjct: 212 DDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTL 271
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I C++ D ++ + EM KG KP IT T ++ K + A + ++M ++
Sbjct: 272 IYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENI 331
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
D Y++LI L + R+L +A K+ +++ KPD T+
Sbjct: 332 RLDDVAYTALISGLCQEGRYL----------------DAEKVLREMLSAGLKPDTGTYTM 375
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C K + G L++EM G VP T+ +L
Sbjct: 376 IINEFCKKGDVWTGS---KLLKEMQRDGHVPSVVTYNVL 411
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 103/261 (39%), Gaps = 51/261 (19%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
S F++L+H +CK AQ + + G P VS+ + Y R D +
Sbjct: 124 SLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLK 183
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
M G +P V T +++++ L K ++ +A +++++M + + +++LI K+
Sbjct: 184 SAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKS 243
Query: 331 VR-------------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
R + YNT+I C + + A L ++ KPD T+
Sbjct: 244 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITY 303
Query: 372 ARSLKMCC----------HKKRMKDGMLVLN----------------------LMREMLS 399
+ CC H+KRM + L+ ++REMLS
Sbjct: 304 TTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLS 363
Query: 400 KGIVPQESTHKMLAEELEKKS 420
G+ P T+ M+ E KK
Sbjct: 364 AGLKPDTGTYTMIINEFCKKG 384
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 14/161 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K +L+ E MS + D + L+D K
Sbjct: 267 TYNTLIYGLCKKGDLKQAHDLIDE-------------MSMKGLKPDKITYTTLIDGCCKE 313
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A++ + ++ I L + LI G C+ + A+K ++EM G PD +Y
Sbjct: 314 GDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTY 373
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
T I +C++ D LKEMQ G PSV+T ++M+
Sbjct: 374 TMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G CK + A + K M Q D V+YT I C+E + + L+EM
Sbjct: 303 YTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREML 362
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G KP T T++++ K ++ K+ ++M+ D + Y+ L+
Sbjct: 363 SAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLM 412
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/198 (19%), Positives = 78/198 (39%), Gaps = 22/198 (11%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+E+ + G+ + + +C+E D R + + G +PSV++ +M+ +
Sbjct: 114 EEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRL 173
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIY 336
+ E ++ M + D YS LI L K + + +
Sbjct: 174 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTF 233
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
T+I C A+++ +++ S PD T+ + C K +K +L+ E
Sbjct: 234 TTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH---DLIDE 290
Query: 397 MLSKGIVPQESTHKMLAE 414
M KG+ P + T+ L +
Sbjct: 291 MSMKGLKPDKITYTTLID 308
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 19/161 (11%)
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
+EH + K F+ V +E+ E G S+ I+MH K I A V+ +
Sbjct: 97 LEHMMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVF------NA 150
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
+T S++ +NT+++ + +L+ + +PD T++
Sbjct: 151 ITKWGLRPSVV----------SFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSV 200
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ C + +M D L EML KG+VP T L +
Sbjct: 201 LINGLCKESKMDDAN---ELFDEMLDKGLVPNGVTFTTLID 238
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 149/362 (41%), Gaps = 40/362 (11%)
Query: 63 LASWVESLKLNEQSRISSHALSEDHETDVDKVS-EILRKRYPSPDKVVEALKCFCFTWAK 121
L S+ + KL + ++ L D+ D + IL Y +V EA + +
Sbjct: 15 LKSFCKQGKLRDGYKLFEQML--DNGISPDGIEYNILIDGYAKKGRVDEANRLY---EEM 69
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
G + TYN+++ A K K EL K + E G+ D
Sbjct: 70 VSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAE--KGF-----------EPDVVTY 116
Query: 182 SVLMDTLVKRNSVAHAYKVFLK--FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
S ++ L K V A ++ + S ++ ++ LI+G CK + A K ++EM
Sbjct: 117 STIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMA 176
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G+ PD ++Y + CR + M +G P V+ ++ AL K +
Sbjct: 177 SKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTD 236
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
EA+K+++ + + + DT Y+S++ L++ +S A ++ +K+
Sbjct: 237 EAMKLFKDVIAKGYMPDTVTYNSILLGLAR----------------KSNMDEAEEMFKKM 280
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
C P+ T++ L C K++ D VL EM G VP T+ +L + L K
Sbjct: 281 VASGCAPNGATYSIVLSGHCRAKKVDDAHKVL---EEMSKIGAVPDVVTYNILLDGLCKT 337
Query: 420 SL 421
+L
Sbjct: 338 NL 339
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 82/371 (22%), Positives = 154/371 (41%), Gaps = 37/371 (9%)
Query: 63 LASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKT 122
L ++ + K+ E + + E DV S I+ + KV EAL+
Sbjct: 85 LNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKT-GKVTEALEMLFHKM--I 141
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G YNA++ L K + ++L++E+ S GYV D +
Sbjct: 142 ERGCSANTVAYNALINGLCKDENIERAYKLLEEM--ASKGYVP-----------DNITYN 188
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
++ L + V+ A + F S ++ L+ K K+D A K K++
Sbjct: 189 TILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAK 248
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G+ PD V+Y + R+ + + + K+M GC P+ T +IV+ +AK++ +A
Sbjct: 249 GYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDA 308
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
KV E+M + D + YN ++ C + A +L + +
Sbjct: 309 HKVLEEMSKIGAVPDV----------------VTYNILLDGLCKTNLVDKAHELFSTMVD 352
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS- 420
+ C PD +++ L C ++ D ++ + M+ + +VP T +L + L K
Sbjct: 353 NGCAPDIVSYSVVLNGLCKTNKVHDARVLFD---RMIERKLVPDVVTFNILMDGLCKAGK 409
Query: 421 LGNAKERIDEL 431
L AK+ +D++
Sbjct: 410 LDEAKDLLDQM 420
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 120/264 (45%), Gaps = 33/264 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
GY YN +++AL K K +L K++ ++ GY+ DT + +
Sbjct: 214 GYSPDVVAYNGLLDALYKEGKTDEAMKLFKDV--IAKGYMP-----------DTVTYNSI 260
Query: 185 MDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+ L +++++ A ++F K + + + +++ G C+ +K D A K ++EM + G
Sbjct: 261 LLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGA 320
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD V+Y ++ C+ K M + GC P +++ ++V++ L K ++++A
Sbjct: 321 VPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARV 380
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSAC 344
++++M + D ++ L+ L KA + ++ YNT+++
Sbjct: 381 LFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLR 440
Query: 345 VRSEEGNALKLRQKIEEDSCKPDC 368
+ A +L Q ++E DC
Sbjct: 441 KQGRHIQADRLTQAMKEKGFLSDC 464
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 20/203 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F V++ +CK K K ++M +G SPDG+ Y I+ Y ++ + + +EM
Sbjct: 11 FRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMV 70
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
G +PS+ T +++A K ++ EA+++++ M + F ++
Sbjct: 71 SVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTM------AEKGFEPDVV---------- 114
Query: 335 IYNTMISSACVRSEEGNALK-LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
Y+T+IS C + AL+ L K+ E C + + + C + ++ L
Sbjct: 115 TYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIER---AYKL 171
Query: 394 MREMLSKGIVPQESTHKMLAEEL 416
+ EM SKG VP T+ + L
Sbjct: 172 LEEMASKGYVPDNITYNTILSGL 194
>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 584
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 128/308 (41%), Gaps = 42/308 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYNA++ + K +EL++ ++S+ + D ++L+ TL+ R
Sbjct: 245 TYNAIIRGMCKEMMVDKAFELLR-------------SLSSRGCKPDIITYNILLRTLLSR 291
Query: 192 NSVAHAYKVFLKFKDCISLSSQ----IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+ K+ + IS+ + +LI C+ K + A ++ M + G PD
Sbjct: 292 GKWSEGEKLI---SEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDA 348
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
Y I +CRE L+ M GC P ++ +M L + + +AL+V+EK
Sbjct: 349 YCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEK 408
Query: 308 MKSDDCLTDTSFYSSLIFIL-SKAVRF------------------LIYNTMISSACVRSE 348
+ C + S Y++L L S R+ + YN++IS C
Sbjct: 409 LDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGM 468
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
A++L ++ +P+ ++ L C R D + VL M E KG P E+T
Sbjct: 469 VDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTE---KGCQPNETT 525
Query: 409 HKMLAEEL 416
+ +L E +
Sbjct: 526 YILLIEGI 533
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 19/202 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G+ K + + A + + M GF PD V+Y I +C +E+
Sbjct: 141 YNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELL 200
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ C+P+VIT TI++ A I A+K+ ++M S DT L
Sbjct: 201 KDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDT----------------L 244
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN +I C A +L + + CKPD T+ L+ + + +G L+
Sbjct: 245 TYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGE---KLI 301
Query: 395 REMLSKGIVPQESTHKMLAEEL 416
EM+S G P TH +L L
Sbjct: 302 SEMISIGCKPNVVTHSILIGTL 323
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/308 (20%), Positives = 130/308 (42%), Gaps = 36/308 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G++ TYN M+ + K L E+ +E+ + TV+ ++L
Sbjct: 168 GFLPDVVTYNIMIGSFCSRGKLDLALEIFEEL-------LKDNCEPTVI------TYTIL 214
Query: 185 MDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
++ + + A K+ + + + ++ +I G CK D A + ++ + G
Sbjct: 215 IEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGC 274
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD ++Y + + + + + EM GCKP+V+T +I++ L + ++ EA+
Sbjct: 275 KPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVN 334
Query: 304 VYEKMKSDDCLTDTSFYSSLIF---------ILSKAVRFLI----------YNTMISSAC 344
+ MK D Y LI + ++ + ++I YNT+++ C
Sbjct: 335 LLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLC 394
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ AL++ +K++E C P+ ++ D L ++ ++L++GI P
Sbjct: 395 RTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSS---GDRYRALEMILKLLNQGIDP 451
Query: 405 QESTHKML 412
E T+ L
Sbjct: 452 DEITYNSL 459
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 109/273 (39%), Gaps = 24/273 (8%)
Query: 136 MVEALGKSKKFG---LMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
++E GK F L+ +K ++L N L M + D ++++ + R
Sbjct: 129 ILERYGKPDVFAYNALISGFIKA-NQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRG 187
Query: 193 SVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
+ A ++F + KD + + +LI D A K + EM G PD ++Y
Sbjct: 188 KLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYN 247
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
I C+E K L+ + +GCKP +IT I++ L + E K+ +M S
Sbjct: 248 AIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISI 307
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
C + +S L I + C + A+ L + ++E KPD +
Sbjct: 308 GCKPNVVTHSIL----------------IGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCY 351
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ C + R+ L + M+S G +P
Sbjct: 352 DPLIAGFCREGRLD---LATEFLEYMISDGCLP 381
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 22/196 (11%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
L++ C+ K + + ++ M G++PD + T I+ + ++ K ++ ++ G
Sbjct: 75 LLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG 134
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337
KP V ++ KA Q+ A +V ++MKS L D + YN
Sbjct: 135 -KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDV----------------VTYN 177
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM-LVLNLMRE 396
MI S C R + AL++ +++ +D+C+P T+ + + G+ + + L+ E
Sbjct: 178 IMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYT----ILIEATILDGGIDVAMKLLDE 233
Query: 397 MLSKGIVPQESTHKML 412
MLSKG+ P T+ +
Sbjct: 234 MLSKGLEPDTLTYNAI 249
>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 794
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 126/297 (42%), Gaps = 44/297 (14%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
TY +V+ALGK K VKE + LA M + D + LM+ +
Sbjct: 518 RTYTILVDALGKEGK-------VKEAKSV------LAVMLKACVKPDVFTYNTLMNGYLL 564
Query: 191 RNSVAHAYKVFLKFKDCISLSS-----QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
V A VF + +SL + +LI+G+CK++ D A KEM Q P
Sbjct: 565 VYEVKKAQHVF----NAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVP 620
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D V+Y+ ++ C+ V + EM+++G VIT ++ L K + +A+ ++
Sbjct: 621 DTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALF 680
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVR 346
KMK +T ++ L+ L K R IYN MI C +
Sbjct: 681 NKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQ 740
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
AL + K+EE+ C P+ T + KK D L+R+M+++G++
Sbjct: 741 GLLEEALTMLSKMEENGCIPNAVTFDIIIN-ALFKKDENDK--AEKLLRQMIARGLL 794
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 105/259 (40%), Gaps = 21/259 (8%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKSDYAQK 233
+L+ + + L++ + K A K+ K ++ + +++ +I CK + A
Sbjct: 409 QLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYG 468
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
EM G S D V+Y+ I +C ++ L EM K P V T TI++ AL
Sbjct: 469 LFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALG 528
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
K ++ EA V M C+ F YNT+++ + E A
Sbjct: 529 KEGKVKEAKSVLAVMLK-ACVKPDVF---------------TYNTLMNGYLLVYEVKKAQ 572
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
+ + PD T+ + C K + + LNL +EM K +VP T+ L
Sbjct: 573 HVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEA---LNLFKEMHQKNMVPDTVTYSSLV 629
Query: 414 EELEKKS-LGNAKERIDEL 431
+ L K + + IDE+
Sbjct: 630 DGLCKSGRISYVWDLIDEM 648
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 106/270 (39%), Gaps = 29/270 (10%)
Query: 173 MRRLDTR-------AMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCK 224
+R++D R + ++D L K V+ AY +F + IS + + LI+G+C
Sbjct: 121 LRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCI 180
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
K A + M +P+ +Y ++ C+E ++ L M + K +VIT
Sbjct: 181 VGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVIT 240
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------------------FI 326
+ +M ++ +A V+ M D Y+ +I I
Sbjct: 241 YSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMI 300
Query: 327 LSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
LS+ + +N ++ S A+ L ++E +PD T + CH ++
Sbjct: 301 LSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITF 360
Query: 387 GMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
G VL ++L +G P T L + L
Sbjct: 361 GFSVL---AKILKRGYPPSTVTLNTLIKGL 387
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 114/290 (39%), Gaps = 40/290 (13%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEI-----------DELSNGYVSLAAMSTVM-- 173
TP+ +YN M+ K K+ L KE+ +++ + + + ST +
Sbjct: 270 TPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKMKHYSTAVSL 329
Query: 174 -RRLDTRA-------MSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCK 224
RL+ + +++L++ + + V K K S+ + LI G C
Sbjct: 330 SHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCL 389
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
+ A ++ GF + VSY I C+ D R L+++ + KP+V
Sbjct: 390 KGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEM 449
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC 344
+ ++ AL K + + EA ++ +M D YS+LI+ C
Sbjct: 450 YSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIY----------------GFC 493
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+ + A+ L ++ + PD T+ + + ++K+ VL +M
Sbjct: 494 IVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVM 543
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 16/194 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G C + A ++ GF + VSY I CR D R L+++
Sbjct: 66 LNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKFLRKID 125
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ KP+V ++ AL K + + EA ++ +M + YS+LI+
Sbjct: 126 GRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIY--------- 176
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
C+ + AL L + + P+ T+ + C + ++K+ VL +M
Sbjct: 177 -------GFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVM 229
Query: 395 REMLSKGIVPQEST 408
+ K V ST
Sbjct: 230 LKACVKSNVITYST 243
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 113/295 (38%), Gaps = 42/295 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +V+AL K K VKE + LA M + + S LMD
Sbjct: 205 TYNILVDALCKEGK-------VKEAKSV------LAVMLKACVKSNVITYSTLMDGYFLV 251
Query: 192 NSVAHAYKVFLKFKDCISLSSQI-----FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
V A VF + +SL ++++I+G+CK ++ D A KEM F P
Sbjct: 252 YEVKKAQHVF----NAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPI 307
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
+ + ++ + + K + ++ KG +P + T I+++ QI V
Sbjct: 308 -IQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLA 366
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
K+ T + NT+I C++ + AL K+ +
Sbjct: 367 KILKRGYPPST----------------VTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQL 410
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ ++A + C ++ D + L+R++ + P + + + L K L
Sbjct: 411 NQVSYATLINGVC---KIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQL 462
>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
Length = 332
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 89/199 (44%), Gaps = 19/199 (9%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I++ +I CK +AQ EM G PD ++Y+ I+ +CR + + L++M
Sbjct: 78 IYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDM 137
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
E+ P V+T + +++AL K ++ EA ++Y M T
Sbjct: 138 IERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTT---------------- 181
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ YN+MI C + +A ++ + SC PD T + + C KR+ +GM +
Sbjct: 182 ITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGM---EI 238
Query: 394 MREMLSKGIVPQESTHKML 412
EM +GIV T+ L
Sbjct: 239 FCEMHRRGIVANTVTYTTL 257
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 76/171 (44%), Gaps = 19/171 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F LI+ K K A++ +M + G P ++Y I+ +C++ L M
Sbjct: 149 FSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMA 208
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
K C P V+T + +++ KAK++ ++++ +M + +T Y++LI
Sbjct: 209 SKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLD 268
Query: 325 -------FILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
++S V ++ + +M++S C + E A + + +++ P
Sbjct: 269 AAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQKSEVCP 319
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G T TYN+M++ K D L++ L +M++ D S L
Sbjct: 176 GIFPTTITYNSMIDGFCKQ-------------DRLNDAKRMLDSMASKSCSPDVVTFSTL 222
Query: 185 MDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
++ K V + ++F + + I ++ + LIHG+C+ D AQ + M G
Sbjct: 223 INGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGV 282
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
+P+ +++ + C +K+ RK L+++Q+ P ++
Sbjct: 283 APNYITFQSMLASLCSKKELRKAFAILEDLQKSEVCPRIV 322
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 18/171 (10%)
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD---------DCLTDTSFYSSL 323
M E GC+P V+T T +M+ L ++ +AL + ++M + + L S
Sbjct: 1 MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESA 60
Query: 324 IFILSKA------VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
+ +LSK +IYN +I C +A L ++ + PD T++ +
Sbjct: 61 LNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDS 120
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
C R D L+R+M+ + I P T L L K+ + E I
Sbjct: 121 FCRSGRWTDAE---QLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEI 168
>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
Length = 825
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 118/278 (42%), Gaps = 24/278 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + + L+D K V A+ +F K ++ I + + LI+G CKT++ D A++ +
Sbjct: 223 DVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVL 282
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++M G P+ ++Y C I Y +++ KEM P V C M AL K
Sbjct: 283 RQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKH 342
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-------------------IY 336
+I EA +++ M D Y +L+ + A ++
Sbjct: 343 GRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVF 402
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT+I++ +L + + + + PD T + + C R+ D M N
Sbjct: 403 NTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFN---H 459
Query: 397 MLSKGIVPQESTHKMLAE-ELEKKSLGNAKERIDELLT 433
M+ G+ P + + L + + ++ L AKE I ++L+
Sbjct: 460 MIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLS 497
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 21/220 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F +I +C+ + D A + M G PD Y+C I+ C +D K + +M
Sbjct: 437 FSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDML 496
Query: 275 EKGCKPSVIT-CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
KG P I T +++ L K ++ E V + LI +
Sbjct: 497 SKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVD----------------LIIHTGQRPNL 540
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ +N+++ C+ A+ L +E +PD T+ + C R+ D L L
Sbjct: 541 ITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDA---LTL 597
Query: 394 MREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELL 432
R+ML K + ++ ++ L + + AKE E++
Sbjct: 598 FRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMI 637
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 110/249 (44%), Gaps = 22/249 (8%)
Query: 166 LAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCK 224
L +M +V D + L+D K + A +F ++L+S +++++HG +
Sbjct: 563 LDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQ 622
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
R++ A++ EM + G + +Y + CR + + L+++ K ++T
Sbjct: 623 ARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILT 682
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC 344
IV+ A+ K + EA +++ + S Y + IL+ Y MI++
Sbjct: 683 FNIVIRAMFKVGRRQEAKELFAAI---------STYGLVPTILT-------YRVMITNLI 726
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM-KDGMLVLNLMREMLSKGIV 403
+A L +E+ SC PD ++M +K + K G N + ++ KGI+
Sbjct: 727 KEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAG----NYLSKIDKKGIL 782
Query: 404 PQESTHKML 412
P+ +T +L
Sbjct: 783 PEATTTSLL 791
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 11/158 (6%)
Query: 178 TRAMSVLMDTLVK-------RNSVAHAYKVFLKFKDCI----SLSSQIFDVLIHGWCKTR 226
R ++ L+ L + R+ A A ++F + C + + +++LI+ + + R
Sbjct: 144 ARGLNELLSALARAPPSAACRDVPALAVELFKRMDRCACPEAAPTIYTYNILINCYRRAR 203
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
+ D + + G PD SY I+ + +E + K +M+E+G P+V+T +
Sbjct: 204 RPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYS 263
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+++ L K K++ +A +V +M + Y+ LI
Sbjct: 264 SLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLI 301
>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
Length = 762
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 136/312 (43%), Gaps = 50/312 (16%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYV--SLAAMSTVMRRLDTRAMSVLMDTLV 189
TYN++++ L K+ G E K D ++ + +A T+++ T+ V M L+
Sbjct: 303 TYNSLMDYLCKN---GRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALL 359
Query: 190 KRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
L ++ I +F++LI + K K D A +M QHG +P+ V+
Sbjct: 360 D-----------LMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVT 408
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL------EKAKQIYEALK 303
Y I C+ ++M ++G P++I T ++H+L +KA+++
Sbjct: 409 YGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEEL----- 463
Query: 304 VYEKMKSDDCLTDTSFYSSLIF-------------ILSKAVRF------LIYNTMISSAC 344
+ E + CL +T F++S+I + VR + Y+T+I C
Sbjct: 464 ILEMLDRGICL-NTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYC 522
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ + A KL + KPDC T+ + C RM D L L +EM+S G+ P
Sbjct: 523 LAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDD---ALALFKEMVSSGVSP 579
Query: 405 QESTHKMLAEEL 416
T+ ++ + L
Sbjct: 580 NIITYNIILQGL 591
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 82/209 (39%), Gaps = 33/209 (15%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G+C K D A K + MF G PD V+Y I YCR KEM
Sbjct: 514 YSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMV 573
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
G P++IT I++ L ++ A ++Y + + S
Sbjct: 574 SSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELS---------------- 617
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL--- 391
YN ++ C + AL++ Q + C D + R+ + M +L +
Sbjct: 618 TYNIILHGLCKNNLTDEALRMFQNL----CLTDLQLETRTFNI------MIGALLKVGRN 667
Query: 392 ----NLMREMLSKGIVPQESTHKMLAEEL 416
+L + + G+VP T+ ++AE L
Sbjct: 668 DEAKDLFAALSANGLVPDVRTYSLMAENL 696
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 107/242 (44%), Gaps = 26/242 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR-KVDYTLKEM 273
+ +LI C+ + D A+ + + GF + +++T ++ C +K +D L+ M
Sbjct: 90 YGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD-------DCLTDTSF------- 319
E C P V +CTI++ L + EAL++ M D D ++ T+
Sbjct: 150 TELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKE 209
Query: 320 ------YSSLIFILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
YS+ +L + + + Y+++I++ C A+++ + ++ P+C T+
Sbjct: 210 GDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTY 269
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431
L C ++ K+ + +++M S G+ P T+ L + L K +I +
Sbjct: 270 NSILHGYCSSEQPKE---AIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDS 326
Query: 432 LT 433
+T
Sbjct: 327 MT 328
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 112/283 (39%), Gaps = 36/283 (12%)
Query: 168 AMSTVMRRL-------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ----IFD 216
AM V+RR+ D + ++L+ L N A ++ D S +
Sbjct: 141 AMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYT 200
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
+I+G+ K SD A EM SPD V+Y+ I C+ + K L M +
Sbjct: 201 TVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKN 260
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336
G P+ +T ++H ++Q EA+ +KM+SD D + Y
Sbjct: 261 GVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDV----------------VTY 304
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N+++ C A K+ + + +PD T+ L+ K + + +L+L
Sbjct: 305 NSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDL--- 361
Query: 397 MLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQR 439
M+ GI P +L K +E++DE + ++ R
Sbjct: 362 MVRNGIHPDHHVFNILICAYAK------QEKVDEAMLVFSKMR 398
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 18/153 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +++ L +++ EL YV + T +L+ ++++ L K
Sbjct: 583 TYNIILQGLFHTRRTAAAKEL----------YVGITKSGT---QLELSTYNIILHGLCKN 629
Query: 192 NSVAHAYKVFLKFKDCIS---LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
N A ++F C++ L ++ F+++I K ++D A+ + +G PD
Sbjct: 630 NLTDEALRMFQNL--CLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVR 687
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
+Y+ E+ + ++D M+E GC +
Sbjct: 688 TYSLMAENLIEQGLLEELDDLFLSMEENGCTAN 720
>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 120/282 (42%), Gaps = 33/282 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN+++ L KS K +++E+ ++ G V DT + L+D K
Sbjct: 47 TYNSIILLLCKSGKVDDAERVLREM--INQGIVP-----------DTVVYTTLIDGFCKL 93
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
++ AYK+F + K I + +I G C+ K A K +MF G PD V+Y
Sbjct: 94 GNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTY 153
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T I+ YC+ + K +M + G P+V+T T + L K Q+ A ++ +M
Sbjct: 154 TTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCG 213
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ Y+SL+ N + S +R A+KL +++E PD T
Sbjct: 214 KGLQLNICTYNSLV------------NGLCKSGNIRQ----AVKLMEEMEVAGMYPDTIT 257
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C M L+REML +G+ P T +L
Sbjct: 258 FTTLMDAYCKTGEMVKAH---ELLREMLDRGLQPTVITFNVL 296
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 104/234 (44%), Gaps = 28/234 (11%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L D L K V A ++ + + L+ ++ L++G CK+ A K M+EM
Sbjct: 189 TALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEV 248
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD +++T ++ YC+ + K L+EM ++G +P+VIT ++M+ + + +
Sbjct: 249 AGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLED 308
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
++ M + +T+ YN+++ C+R N ++ +I
Sbjct: 309 GERLLAWMLEKGIMPNTT----------------TYNSLMKQYCIR----NNMRCTTEIY 348
Query: 361 EDSCK----PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
+ C PD T+ +K C + MK+ L +EM KG S++
Sbjct: 349 KGMCARGVMPDSNTYNILIKGHCKARNMKEAWF---LHKEMAEKGFNLTASSYN 399
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 19/174 (10%)
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G +PD VSY+ I YC + +KV ++EMQ KG KP++ T ++ L K+ ++ +
Sbjct: 4 RGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDD 63
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A +V +M + + DT ++Y T+I C A KL ++E
Sbjct: 64 AERVLREMINQGIVPDT----------------VVYTTLIDGFCKLGNIQAAYKLFDEME 107
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ PD + + C +M + V N +M S+G+ P E T+ L +
Sbjct: 108 KQRIVPDFIAYTAVICGLCRCGKMMEADKVFN---KMFSRGVEPDEVTYTTLID 158
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 19/202 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +I+G+C + K ++EM G P+ +Y I C+ + L+EM
Sbjct: 13 YSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMI 72
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+G P + T ++ K I A K++++M+ + D F+
Sbjct: 73 NQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPD----------------FI 116
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
Y +I C + A K+ K+ +PD T+ + C M+ +L
Sbjct: 117 AYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEK---AFSLH 173
Query: 395 REMLSKGIVPQESTHKMLAEEL 416
+M+ G+ P T+ LA+ L
Sbjct: 174 NQMVQSGLTPNVVTYTALADGL 195
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 97/231 (41%), Gaps = 49/231 (21%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN++V L KS G + + VK ++E+ +A M DT + LMD K
Sbjct: 222 TYNSLVNGLCKS---GNIRQAVKLMEEME-----VAGMYP-----DTITFTTLMDAYCKT 268
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM--------------- 235
+ A+++ + D + + F+VL++G+C + + ++ +
Sbjct: 269 GEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTY 328
Query: 236 --------------------KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
K M G PD +Y I+ +C+ ++ ++ + KEM E
Sbjct: 329 NSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAE 388
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
KG + + ++ K K+I EA +++E+M+ + D Y+ + I
Sbjct: 389 KGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDI 439
>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
Length = 506
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 118/255 (46%), Gaps = 23/255 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ-IFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
S ++D L+K AY + + D L + I+ +I CK + D A + M +
Sbjct: 202 STVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVK 261
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
+G +P+ +YT + +C + L++M G +P+V+T + M L K + E
Sbjct: 262 NGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTE 321
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI--FILSKAVRFL-----------------IYNTMIS 341
A K+++ M D + YSSL+ + + A+ + ++NT+I
Sbjct: 322 ARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIY 381
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
++ + + A+ + K+ + KP+C T++ + C RM++ L L +EM+S G
Sbjct: 382 ASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMEN---ALALFQEMVSNG 438
Query: 402 IVPQESTHKMLAEEL 416
+ P T+ ++ + L
Sbjct: 439 VSPNFITYNIMLQGL 453
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/351 (18%), Positives = 141/351 (40%), Gaps = 39/351 (11%)
Query: 72 LNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPE 131
+ +++R+ S E +D E+LR+ +P + +L A+
Sbjct: 23 IQDRARVGSGG----AEDALDVFDELLRRGIGAP---IRSLNGALADVARDNPA--AAVS 73
Query: 132 TYNAMVEALGKS------KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
+N M A G S +G++ L G+ +L + R++ + L+
Sbjct: 74 RFNRMARA-GASMVTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLL 132
Query: 186 DTLVKRNSVAHAYKVFLKFKDCISLSSQIFD--VLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L A + L+ +S +F +++ G C +S A + + M G
Sbjct: 133 KGLCADKRTDDAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGG 192
Query: 244 S--PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
P+ VSY+ I+ + D K T +EM ++ P+V+ + ++ AL K + + +A
Sbjct: 193 GCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKA 252
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
++V+++M + + Y+SL + C + A+K +K+
Sbjct: 253 MEVHDRMVKNGVTPNCFTYTSL----------------VHGFCSSGQLTEAIKFLEKMCS 296
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ +P+ T++ + C R + + + M+ +G+ P +T+ L
Sbjct: 297 NGVEPNVVTYSSFMDYLCKNGRCTEARKIFD---SMVKRGLKPDITTYSSL 344
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 31/208 (14%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDEL-SNGY-VSLAAMSTVMRRL--DTRAMS 182
TP TY ++V S G + E +K ++++ SNG ++ S+ M L + R
Sbjct: 265 TPNCFTYTSLVHGFCSS---GQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTE 321
Query: 183 V--LMDTLVKRN---------SVAHAYKV---FLKFKDCISLSSQ--------IFDVLIH 220
+ D++VKR S+ H Y + ++ L Q +F+ LI+
Sbjct: 322 ARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIY 381
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
K K D A +M Q G P+ V+Y+ I YC+ +EM G P
Sbjct: 382 ASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSP 441
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKM 308
+ IT I++ L + + A + Y ++
Sbjct: 442 NFITYNIMLQGLFRTGRTATAKEFYVQI 469
>gi|15233137|ref|NP_191711.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183498|sp|Q9M316.1|PP292_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g61520, mitochondrial; Flags: Precursor
gi|6850843|emb|CAB71082.1| putative protein [Arabidopsis thaliana]
gi|332646696|gb|AEE80217.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 766
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 116/272 (42%), Gaps = 37/272 (13%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
+NA++ LG++ M +LV ++DE V R D + +L++TL K
Sbjct: 297 FNALLSCLGRNMDISRMNDLVLKMDE-------------VKIRPDVVTLGILINTLCKSR 343
Query: 193 SVAHAYKVFLKFK-------DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM-FQHGFS 244
V A +VF K + + I S F+ LI G CK + A++ + M + +
Sbjct: 344 RVDEALEVFEKMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCA 403
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P+ V+Y C I+ YCR + M+E KP+V+T ++ + + + A+
Sbjct: 404 PNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVF 463
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
+ M+ + + + Y T+I + C S A+ +K+ E C
Sbjct: 464 FMDMEKEGVKGNV----------------VTYMTLIHACCSVSNVEKAMYWYEKMLEAGC 507
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
PD + + + C +R D + V+ ++E
Sbjct: 508 SPDAKIYYALISGLCQVRRDHDAIRVVEKLKE 539
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 108/221 (48%), Gaps = 19/221 (8%)
Query: 197 AYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255
A +V K K+ SL +++LI +C ++ + + +M + G PD ++Y I
Sbjct: 530 AIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNTLIS 589
Query: 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315
+ + KDF V+ +++M+E G P+V T V+ A ++ EALK+++ M +
Sbjct: 590 FFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVN 649
Query: 316 DTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ +IYN +I++ G AL L+++++ +P+ ET+ +L
Sbjct: 650 PNT---------------VIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETY-NAL 693
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C ++K G +L LM EM+ + P + T ++L E L
Sbjct: 694 FKCLNEK--TQGETLLKLMDEMVEQSCEPNQITMEILMERL 732
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 114/272 (41%), Gaps = 58/272 (21%)
Query: 172 VMRRLDT-----RAMSVLMDTLVKRNSVAHAYKVF---LKFKDCISLSSQIFDVLIHGWC 223
V RLD+ + +V++D L++ V A+KV L+ + + D+++H
Sbjct: 174 VYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVW 233
Query: 224 KTR--KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC----------------------- 258
K R + + HG SP+ V T FI C
Sbjct: 234 KGRLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANAAWDILSDLMKNKTPLE 293
Query: 259 ------------REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
R D +++ + +M E +P V+T I+++ L K++++ EAL+V+E
Sbjct: 294 APPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFE 353
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC--VRSEEGNALKLRQKIEEDSC 364
KM+ TD I + ++ F NT+I C R +E L +R K+EE C
Sbjct: 354 KMRGKR--TDDGN-----VIKADSIHF---NTLIDGLCKVGRLKEAEELLVRMKLEE-RC 402
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
P+ T+ + C +++ V++ M+E
Sbjct: 403 APNAVTYNCLIDGYCRAGKLETAKEVVSRMKE 434
>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 618
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 115/261 (44%), Gaps = 18/261 (6%)
Query: 71 KLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTP 130
+L E +++ +S+ E ++ S IL Y +V ++ FC +K G +
Sbjct: 364 RLGEANQMLDLMVSKGCEPNIVTYS-ILINSYCKAKRVDNGMRLFCEISSK---GLVADT 419
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
TYN +V+ +S K + EL +E+ VS +V+ +L+D L
Sbjct: 420 VTYNTLVQGFCQSGKLNVAKELFQEM-------VSRGVPPSVV------TYGILLDGLCD 466
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A ++F K K + L I++++IHG C K D A + G PD ++
Sbjct: 467 NGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLT 526
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y I C++ + D ++M+E GC PS T I++ A + ++++ E+MK
Sbjct: 527 YNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEEMK 586
Query: 310 SDDCLTDTSFYSSLIFILSKA 330
D S ++ +LS
Sbjct: 587 MRGFAADASTIKMVVVMLSDG 607
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 112/268 (41%), Gaps = 29/268 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
DT S L+D K N + A ++ + K C + + +LI+ +CK ++ D +
Sbjct: 348 DTITYSSLIDGFCKENRLGEANQMLDLMVSKGC-EPNIVTYSILINSYCKAKRVDNGMRL 406
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
E+ G D V+Y ++ +C+ +EM +G PSV+T I++ L
Sbjct: 407 FCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCD 466
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LI 335
++ +AL+++EKM+ + Y+ +I + A + L
Sbjct: 467 NGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLT 526
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKP-DCETHARSLKMCCHKKRMKDGML-VLNL 393
YN MI C + A L +K++ED C P DC + + G++ + L
Sbjct: 527 YNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDC-----TYNILIRAHLGGSGVISSVEL 581
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKSL 421
+ EM +G ST KM+ L L
Sbjct: 582 IEEMKMRGFAADASTIKMVVVMLSDGRL 609
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 21/255 (8%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
+++ + K + A A +F K ++ I S + ++I CK D A EM G
Sbjct: 215 VLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKG 274
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
D V+Y+ I C + + L+EM + P+V+T + ++ K ++ EA
Sbjct: 275 IKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAK 334
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362
++Y +M + DT YSSL I C + G A ++ +
Sbjct: 335 ELYNEMVARGIAPDTITYSSL----------------IDGFCKENRLGEANQMLDLMVSK 378
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSL 421
C+P+ T++ + C KR+ +GM L E+ SKG+V T+ L + + L
Sbjct: 379 GCEPNIVTYSILINSYCKAKRVDNGM---RLFCEISSKGLVADTVTYNTLVQGFCQSGKL 435
Query: 422 GNAKERIDELLTHAT 436
AKE E+++
Sbjct: 436 NVAKELFQEMVSRGV 450
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 105/246 (42%), Gaps = 23/246 (9%)
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+++I+ +C+ RK +A + + GF P+ ++++ I +C E + + M E
Sbjct: 108 NIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVE 167
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA----- 330
+P+V+T +++ L ++ EAL + ++M C + Y ++ + K+
Sbjct: 168 MKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTAL 227
Query: 331 --------------VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+ Y+ +I S C +AL L ++E K D ++ +
Sbjct: 228 ALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIG 287
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHA 435
C+ R DG ++REM+ + I+P T L + K+ L AKE +E++
Sbjct: 288 GLCNDGRWDDGA---KMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARG 344
Query: 436 TEQRTF 441
T
Sbjct: 345 IAPDTI 350
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 88/191 (46%), Gaps = 19/191 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F LI + K K A++ EM G +PD ++Y+ I+ +C+E + + L M
Sbjct: 317 FSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMV 376
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
KGC+P+++T +I++++ KAK++ ++++ ++ S + DT +
Sbjct: 377 SKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADT----------------V 420
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YNT++ C + A +L Q++ P T+ L C ++ + + M
Sbjct: 421 TYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKM 480
Query: 395 ---REMLSKGI 402
R +L GI
Sbjct: 481 QKSRMILGIGI 491
>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
Length = 609
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 116/257 (45%), Gaps = 25/257 (9%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFK--DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
++L++ L ++ + A + K C +S ++ L+HG+CK +K D A + + M
Sbjct: 190 FNILINFLCRQGLLGRAIDILEKMPMHGCTP-NSLSYNPLLHGFCKEKKMDRAIEYLDIM 248
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
G PD V+Y + C++ L ++ KGC P +IT V+ L K +
Sbjct: 249 VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKT 308
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRF-------------LIYNTM 339
A+K+ ++M+ D YSSL+ LS+ A++F + YN++
Sbjct: 309 ERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSI 368
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
+ C + A+ + CKP T+ ++ ++ K+ L+L+ E+ S
Sbjct: 369 MLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKE---ALDLLNELCS 425
Query: 400 KGIVPQESTHKMLAEEL 416
+G+V + S ++ A L
Sbjct: 426 RGLVKKSSAEQVAAPVL 442
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 113/261 (43%), Gaps = 23/261 (8%)
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEM 238
S + T K + V A K+ + ++ S + ++VLI+G CK + D A K + M
Sbjct: 84 GFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNM 143
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
+G P+ +++ + C + + L +M KGC PSV+T I+++ L + +
Sbjct: 144 PSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLL 203
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRFL-------------IYNTM 339
A+ + EKM C ++ Y+ L+ K A+ +L YNT+
Sbjct: 204 GRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTL 263
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
+++ C + A+++ ++ C P T+ + + + + L+ EM
Sbjct: 264 LTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTER---AIKLLDEMRR 320
Query: 400 KGIVPQESTHKMLAEELEKKS 420
KG+ P T+ L L ++
Sbjct: 321 KGLKPDIITYSSLVSGLSREG 341
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 21/212 (9%)
Query: 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
C SLS F + CK A K + EM G PD V+Y I C+E +
Sbjct: 79 CFSLSG--FSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEA 136
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
L M GC+P+VIT I++ ++ + +A K+ M C
Sbjct: 137 IKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGC------------- 183
Query: 327 LSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
S +V + +N +I+ C + G A+ + +K+ C P+ ++ L C +K+M
Sbjct: 184 -SPSV--VTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDR 240
Query: 387 GMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
+ L++ M+S+G P T+ L L K
Sbjct: 241 AIEYLDI---MVSRGCYPDIVTYNTLLTALCK 269
>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63070, mitochondrial; Flags: Precursor
gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 115/271 (42%), Gaps = 34/271 (12%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF---LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQK 233
D + L+D VK + A K++ +K K C ++ LI G+CK ++ + +
Sbjct: 319 DLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFP-DVVAYNTLIKGFCKYKRVEEGME 377
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
+EM Q G + V+YT I + + +D K+M G P ++T I++ L
Sbjct: 378 VFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLC 437
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FL 334
+ AL V+E M+ D D Y+++I L KA + +
Sbjct: 438 NNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVV 497
Query: 335 IYNTMISSACVRS--EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG--MLV 390
Y TM+S C + EE +AL + K ED P+ T+ + + R++DG
Sbjct: 498 TYTTMMSGFCRKGLKEEADALFVEMK--EDGPLPNSGTYNTLI-----RARLRDGDEAAS 550
Query: 391 LNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
L++EM S G ST ++ L L
Sbjct: 551 AELIKEMRSCGFAGDASTFGLVTNMLHDGRL 581
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 124/302 (41%), Gaps = 34/302 (11%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
++ ++ A+ K KF L+ L +++ L + + S+ ++ +R+
Sbjct: 78 FSKLLSAIAKMNKFDLVISLGEQMQNLGISH-------------NLYTYSIFINYFCRRS 124
Query: 193 SVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
++ A + K K S + L++G+C + A + +M + G+ PD V++T
Sbjct: 125 QLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFT 184
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ + + ++ M KGC+P ++T V++ L K + AL + KM+
Sbjct: 185 TLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKG 244
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
D +IYNT+I C +A L K+E KPD T+
Sbjct: 245 KIEADV----------------VIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 288
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDE 430
+ C+ R D L+ +ML K I P L + K+ L A++ DE
Sbjct: 289 NPLISCLCNYGRWSDAS---RLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDE 345
Query: 431 LL 432
++
Sbjct: 346 MV 347
>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
Length = 648
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 113/267 (42%), Gaps = 27/267 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
DT + L+D K N + A ++F + K C + +LI+ +CK ++ D +
Sbjct: 378 DTITYNSLIDGFCKENCLHEANQMFDLMVSKGC-EPDIVTYSILINSYCKAKRVDDGMRL 436
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+E+ G P+ ++Y + +C+ +EM +G PSV+T I++ L
Sbjct: 437 FREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCD 496
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LI 335
++ +AL+++EKM+ Y+ +I + A + +
Sbjct: 497 NGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVT 556
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML-VLNLM 394
YN MI C + A L +K++ED C PD T+ + G++ + L+
Sbjct: 557 YNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTY----NILIRAHLGGSGLISSVELI 612
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSL 421
EM G ST KM+ + L + L
Sbjct: 613 EEMKVCGFSADSSTIKMVIDMLSDRRL 639
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 114/258 (44%), Gaps = 18/258 (6%)
Query: 72 LNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPE 131
L+E +++ +S+ E D+ S IL Y +V + ++ F +K G +
Sbjct: 395 LHEANQMFDLMVSKGCEPDIVTYS-ILINSYCKAKRVDDGMRLFREISSK---GLIPNTI 450
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +V +S K EL +E+ VS +V+ +L+D L
Sbjct: 451 TYNTLVLGFCQSGKLNAAKELFQEM-------VSRGVPPSVV------TYGILLDGLCDN 497
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A ++F K K ++L I++++IHG C K D A + G PD V+Y
Sbjct: 498 GELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTY 557
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I C++ + D ++M+E GC P T I++ A + ++++ E+MK
Sbjct: 558 NVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKV 617
Query: 311 DDCLTDTSFYSSLIFILS 328
D+S +I +LS
Sbjct: 618 CGFSADSSTIKMVIDMLS 635
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/413 (21%), Positives = 160/413 (38%), Gaps = 94/413 (22%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVK--EIDELSNGYV 164
KV +A+ F + Q+ + TP +N + A+ ++K++ L+ K E++ + +
Sbjct: 79 KVNDAIDLF---ESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMY 135
Query: 165 SLAAMS-------------TVMRRL-------DTRAMSVLMDTLVKRNSVAHAYKVFLKF 204
++ M +V+ R DT S L++ V+ A + +
Sbjct: 136 TMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRM 195
Query: 205 ------KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258
D +++S+ LI+G C + A + M ++GF PD V+Y + C
Sbjct: 196 VEMKQRPDLVTVST-----LINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLC 250
Query: 259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318
+ + ++M+E+ K SV+ +IV+ +L K +AL ++ +M+ D
Sbjct: 251 KSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVV 310
Query: 319 FYSSLIF----------------------ILSKAVRF----------------------- 333
YSSLI I+ V F
Sbjct: 311 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 370
Query: 334 ---------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
+ YN++I C + A ++ + C+PD T++ + C KR+
Sbjct: 371 ITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRV 430
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHAT 436
DGM L RE+ SKG++P T+ L + L AKE E+++
Sbjct: 431 DDGM---RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 480
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 103/225 (45%), Gaps = 22/225 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F LI + K K A++ EM G +PD ++Y I+ +C+E + + M
Sbjct: 347 FSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMV 406
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF--------- 325
KGC+P ++T +I++++ KAK++ + ++++ ++ S + +T Y++L+
Sbjct: 407 SKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLN 466
Query: 326 --------ILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++S+ V + Y ++ C E AL++ +K+++ + +
Sbjct: 467 AAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIII 526
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C+ ++ D +L + KG+ P T+ ++ L KK
Sbjct: 527 HGMCNASKVDDAW---SLFCSLSDKGVKPDVVTYNVMIGGLCKKG 568
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 124/303 (40%), Gaps = 47/303 (15%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+ G+ TY ++ L KS L +L ++++E R + +
Sbjct: 231 VEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEE---------------RNIKASVV 275
Query: 182 --SVLMDTLVKRNSVAHAYKVFLKFK------DCISLSSQIFDVLIHGWCKTRKSDYAQK 233
S+++D+L K S A +F + + D ++ SS LI G C K D K
Sbjct: 276 QYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSS-----LIGGLCNDGKWDDGAK 330
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
++EM PD V+++ I+ + +E + EM +G P IT ++
Sbjct: 331 MLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC 390
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
K ++EA ++++ M S C D + Y+ +I+S C + +
Sbjct: 391 KENCLHEANQMFDLMVSKGCEPD----------------IVTYSILINSYCKAKRVDDGM 434
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
+L ++I P+ T+ + C ++ L +EM+S+G+ P T+ +L
Sbjct: 435 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK---ELFQEMVSRGVPPSVVTYGILL 491
Query: 414 EEL 416
+ L
Sbjct: 492 DGL 494
>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
Length = 1393
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 22/221 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I G+CK A + +K+ GF PD V+Y I C E D + E Q
Sbjct: 293 YNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQ 352
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
KG KP ++ ++ L I AL+V +M + C D Y+ +I
Sbjct: 353 AKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNIS 412
Query: 325 ---FILSKAVR------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+++ A+ +NT+I C R + +AL+L +++ E PD T+ L
Sbjct: 413 DATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVL 472
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C ++ + V +EM+ KG P T+ +L E
Sbjct: 473 NGLCKAGKVNE---VNETFQEMILKGCHPNPITYNILIENF 510
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 19/200 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ LI G+CK K D A + ++ M+++G +PD ++Y + C+ +V+ T +EM
Sbjct: 433 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 492
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
KGC P+ IT I++ ++ ++ EA KV KM + D AV F
Sbjct: 493 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPD-------------AVSF- 538
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
NT+I C + A L QK+EE +T + K M + +
Sbjct: 539 --NTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMH---MAEKIF 593
Query: 395 REMLSKGIVPQESTHKMLAE 414
EMLSKG T+++L +
Sbjct: 594 DEMLSKGHRADSYTYRVLID 613
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 87/200 (43%), Gaps = 19/200 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G CK A ++ M G PD +Y I+ YC+ ++ LK+
Sbjct: 258 YNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAV 317
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
KG P +T +++ L + AL+++ + ++ D +
Sbjct: 318 FKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPD----------------IV 361
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+YN+++ C++ +AL++ ++ E+ C PD +T+ + C + D +V+N
Sbjct: 362 VYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMN-- 419
Query: 395 REMLSKGIVPQESTHKMLAE 414
+ + KG +P T L +
Sbjct: 420 -DAIMKGYLPDVFTFNTLID 438
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 14/181 (7%)
Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL 188
P TYN ++E +S K M E K I MS D + + L+
Sbjct: 499 NPITYNILIENFCRSNK---MEEASKVI----------VKMSQEGLHPDAVSFNTLIYGF 545
Query: 189 VKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+ + AY +F K ++ S ++ F+ LI + A+K EM G D
Sbjct: 546 CRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADS 605
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+Y I+ C+ + + L EM +KG PS+ T V+++L ++++A+ +
Sbjct: 606 YTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHI 665
Query: 308 M 308
M
Sbjct: 666 M 666
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/230 (17%), Positives = 90/230 (39%), Gaps = 27/230 (11%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ ++ ++ D A K M G SPD ++T + +C L
Sbjct: 84 AAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLL 143
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK- 329
+ + +G +V CT+V L ++A +++++M + + ++ ++ L K
Sbjct: 144 RALPHRG---AVAYCTVVC-GLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKR 199
Query: 330 ------------------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
++ YN I C A++L + + PD T+
Sbjct: 200 GDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTY 258
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
++ C K ++ M + +R M+++G +P + T+ + + K S+
Sbjct: 259 NTLIRGLCKKSMPQEAM---HYLRRMMNQGCLPDDFTYNTIIDGYCKISM 305
>gi|125551971|gb|EAY97680.1| hypothetical protein OsI_19602 [Oryza sativa Indica Group]
Length = 586
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 125/309 (40%), Gaps = 40/309 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEID---------------------ELSNGY 163
G+ HT TY MV LGK+++F M L++E+ E+ N
Sbjct: 216 GFAHTTITYCKMVHILGKARQFQSMVALIQEMGKEGALCMDAFKIAIKSFAAAGEIKNAV 275
Query: 164 VSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWC 223
M T + + L+ L + A +VF + +D + + + L+ WC
Sbjct: 276 GVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTALMLAWC 335
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
R A + EM ++G PD V + IE R + + + M+ KG P+V
Sbjct: 336 NARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVW 395
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSA 343
T T+++ K ++ A++ +E+M+ C D + Y+ L+ A R
Sbjct: 396 TYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRM---------- 445
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
L +++ + C PD T+ +K+ ++ D + ++M+ KG+
Sbjct: 446 ------DRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDD---AARIYKKMIKKGLE 496
Query: 404 PQESTHKML 412
P T+ M+
Sbjct: 497 PTIHTYNMM 505
>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 108/237 (45%), Gaps = 22/237 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++LI+ C+ D++ + +MF+ G PD +++ I C E ++ EM
Sbjct: 131 LNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMV 190
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
++G +P+VI+ T V++ L K A+ V++KM+ + C + YS++I L K
Sbjct: 191 KRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVN 250
Query: 330 -AVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
A+ FL YN+++ C + A +L +++ P+ T +
Sbjct: 251 DAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILV 310
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
C + + + LV M E KG+ P ST+ L + + L N +++ E++
Sbjct: 311 DGLCKEGMVSEARLVFETMTE---KGVEPDISTYNALMDGYCLQRLMNEAKKVFEIM 364
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 105/234 (44%), Gaps = 24/234 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +I+G CKT + A K+M Q+G P+ V+Y+ I+ C+++ L EM
Sbjct: 201 YTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMV 260
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
E+G P+V T ++H Q+ EA +++++M D + +T ++ L+ L K
Sbjct: 261 ERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVS 320
Query: 330 AVRFLI--------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
R + YN ++ C++ A K+ + + C P ++ +
Sbjct: 321 EARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILI 380
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
C +RM + +L+ EM K + P T+ L + L + LG KE ++
Sbjct: 381 NGYCKSRRMDEAK---SLLAEMYHKALNPDTVTYSTLMQGLCQ--LGRPKEALN 429
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 119/260 (45%), Gaps = 25/260 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + LMD + + A KVF + + + + +++LI+G+CK+R+ D A+ +
Sbjct: 337 DISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLL 396
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM+ +PD V+Y+ ++ C+ ++ KEM G P+++T I++ K
Sbjct: 397 AEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKH 456
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ EALK+ + MK + Y+ LI + A + + A +L
Sbjct: 457 GHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEV----------------AKEL 500
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLA 413
K+ D +PD T+ + K +K+G+ +L R+M G +P ++ ++
Sbjct: 501 FSKLFGDGTRPDIRTYTVMI-----KGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMI 555
Query: 414 EE-LEKKSLGNAKERIDELL 432
+ L+ + A IDE++
Sbjct: 556 QGFLQNQDSSTAIRLIDEMV 575
>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
Length = 554
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 138/328 (42%), Gaps = 42/328 (12%)
Query: 135 AMVEALGKSKKFGL-MWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNS 193
AM+ GK K G+ + + I L NG +S L + + L+ T V N+
Sbjct: 186 AMLSLFGKYLKNGVTIGDYTCSI--LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNT 243
Query: 194 VAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
+ + Y + + S Q+ ++ LI+G CK + AQ + EM +G
Sbjct: 244 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 303
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
+P ++ I+ Y R K L EMQE G KP+V++ +++A K +I EA+
Sbjct: 304 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 363
Query: 303 KVYEKMKSDDCLTDTSFYSSLI------------FILSKAVR-------FLIYNTMISSA 343
+ + M D L + Y+++I FIL + ++ + YN +I
Sbjct: 364 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 423
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C +S+ A ++ + PD ++ + CC++ + L+L + M GI
Sbjct: 424 CNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDK---ALDLQQRMHKYGIK 480
Query: 404 PQESTHKMLAEELEKKSLGNAKERIDEL 431
T+ L LG A R++E+
Sbjct: 481 STVRTYHQLI-----SGLGGAG-RLNEM 502
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 122/302 (40%), Gaps = 16/302 (5%)
Query: 29 LCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHE 88
L N +C T EL G S ++ D + + + + L E+ + L E +
Sbjct: 244 LINGYCQTGELEGAFSTFGQMKSRHIKPDHI--TYNALINGLCKAERITNAQDLLMEMQD 301
Query: 89 TDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGL 148
V+ E + + + KCF + G +Y ++V A K+ K
Sbjct: 302 NGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK--- 358
Query: 149 MWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DC 207
+ E V +D++ + V A + + ++D V+ A+ + K K +
Sbjct: 359 IPEAVAILDDMFHKDVLPNA----------QVYNAIIDAYVEHGPNDQAFILVEKMKSNG 408
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS S +++LI G C + A++ + + H PD VSY I C + K
Sbjct: 409 ISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKAL 468
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ M + G K +V T ++ L A ++ E +Y+KM ++ + + ++ ++
Sbjct: 469 DLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAY 528
Query: 328 SK 329
SK
Sbjct: 529 SK 530
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 80/200 (40%), Gaps = 19/200 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++VL+ G C+ + + EM PDG +Y+ + R D + + +
Sbjct: 136 YNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYL 195
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ G TC+I+++ L K ++ A +V + L + + +
Sbjct: 196 KNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQS------LVNAGLVPTRV---------- 239
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
IYNT+I+ C E A +++ KPD T+ + C +R+ + +L+
Sbjct: 240 IYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQ---DLL 296
Query: 395 REMLSKGIVPQESTHKMLAE 414
EM G+ P T L +
Sbjct: 297 MEMQDNGVNPTVETFNTLID 316
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 51/297 (17%), Positives = 112/297 (37%), Gaps = 70/297 (23%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
G T ET+N +++A G++ +L ++ L+ M + + +
Sbjct: 302 NGVNPTVETFNTLIDAYGRTG-------------QLEKCFIVLSEMQENGLKPNVVSYGS 348
Query: 184 LMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+++ K + A + + KD + ++Q+++ +I + + +D A +++M +
Sbjct: 349 IVNAFCKNGKIPEAVAILDDMFHKDVLP-NAQVYNAIIDAYVEHGPNDQAFILVEKMKSN 407
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G SP V+Y I+ C + QI EA
Sbjct: 408 GISPSIVTYNLLIKGLCNQ-----------------------------------SQISEA 432
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
++ + + + D Y++LI S+ C R AL L+Q++ +
Sbjct: 433 EEIINSLSNHRLIPDAVSYNTLI----------------SACCYRGNIDKALDLQQRMHK 476
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
K T+ + + R+ + + L ++M+ +VP + H ++ E K
Sbjct: 477 YGIKSTVRTYHQLISGLGGAGRLNE---MEYLYQKMMQNNVVPSNAIHNIMVEAYSK 530
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 53/115 (46%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++V+I G + + A + EM + P+ ++Y I+ + + D +M
Sbjct: 66 YNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMV 125
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
G KP+ IT +++ L +A ++ E + ++M S + D YS L LS+
Sbjct: 126 CHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 180
>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g12775, mitochondrial-like [Glycine max]
Length = 750
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 118/272 (43%), Gaps = 33/272 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T+N +++ALGK K + + LA M + D + L+D
Sbjct: 275 TFNTLIDALGKEGK-------------MKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFL 321
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
N V +A VF + ++ + + + +I G CK + D A +EM PD V+Y
Sbjct: 322 NKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTY 381
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T I+ C+ + K+M+E+G +P V + TI++ AL K ++ A + ++++
Sbjct: 382 TSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRL-- 439
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ + YN MI+ C G A+ L+ K+E C PD T
Sbjct: 440 --------------LVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAIT 485
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
+++ +K D ++REM+++G+
Sbjct: 486 F-KTIICALFEKDENDK--AEKILREMIARGL 514
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 17/213 (7%)
Query: 159 LSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDV 217
L + LA M+ + D LMD N + HA VF ++ + Q + +
Sbjct: 522 LKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTI 581
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
+I G CK + D A +EM P+ V+YT I+ C+ + LKEM+E G
Sbjct: 582 MIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHG 641
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337
+P V + TI++ L K+ ++ A ++++++ + + +Y
Sbjct: 642 IQPDVYSYTILLDGLCKSGRLEGAKEIFQRL----------------LVKGYHLNVQVYT 685
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
MI+ C AL L+ K+E+ C PD T
Sbjct: 686 AMINELCKAGLFDEALDLQXKMEDKGCMPDAVT 718
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 115/276 (41%), Gaps = 28/276 (10%)
Query: 165 SLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI-----SLSSQIFDVLI 219
+ + ++ +++R ++ ++TL+K K L F D + L+ + LI
Sbjct: 117 AFSVLANILKR-GYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLI 175
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
+G CKT ++ + ++++ H PD V Y I C+ K EM KG
Sbjct: 176 NGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGIS 235
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS-----KAVRFL 334
P+V+T +++ + EA + +MK + D +++LI L KA + +
Sbjct: 236 PNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIV 295
Query: 335 I--------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
+ YN++I ++ NA + + + P+ T+ + C
Sbjct: 296 LAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCK 355
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+K + + M +L EM K ++P T+ L + L
Sbjct: 356 EKMVDEAM---SLFEEMKYKNMIPDIVTYTSLIDGL 388
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 4/179 (2%)
Query: 150 WELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209
+ LV E+ + S+A M + + ++++D L K+ +V A +F + K
Sbjct: 551 YFLVNELKHAKYVFYSMAQMGVTP---NVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNM 607
Query: 210 LSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
+ + + LI CK + A +KEM +HG PD SYT ++ C+
Sbjct: 608 FPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKE 667
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ + KG +V T +++ L KA EAL + KM+ C+ D + +I+ L
Sbjct: 668 IFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWAL 726
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/384 (20%), Positives = 139/384 (36%), Gaps = 100/384 (26%)
Query: 119 WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE----------------IDEL-SN 161
++ Q+G TY M++ L K K L +E ID L N
Sbjct: 332 YSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKN 391
Query: 162 GYVSLA-AMSTVMR----RLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIF 215
++ A A+ M+ + D + ++L+D L K + +A + F + L+ Q +
Sbjct: 392 HHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTY 451
Query: 216 DVLIHGWCKT-----------------------------------RKSDYAQKAMKEMFQ 240
+V+I+G CK ++D A+K ++EM
Sbjct: 452 NVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIA 511
Query: 241 HGFS-----------------------PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
G PD V+Y ++ Y + + Y M + G
Sbjct: 512 RGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMG 571
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337
P+V TI++ L K K + EA+ ++E+MK + + Y+SL
Sbjct: 572 VTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSL-------------- 617
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
I + C A+ L ++++E +PD ++ L C R++ + + +
Sbjct: 618 --IDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAK---EIFQRL 672
Query: 398 LSKGIVPQESTHKMLAEELEKKSL 421
L KG + + EL K L
Sbjct: 673 LVKGYHLNVQVYTAMINELCKAGL 696
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 83/191 (43%), Gaps = 14/191 (7%)
Query: 119 WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT 178
++ Q G + Y M++ L K K L +E+ N + ++ ++
Sbjct: 565 YSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKH-KNMFPNIVTYTS------- 616
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
L+D L K + + A + + K+ I + +L+ G CK+ + + A++ +
Sbjct: 617 -----LIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQR 671
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
+ G+ + YT I C+ F + +M++KGC P +T I++ AL + +
Sbjct: 672 LLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDE 731
Query: 298 IYEALKVYEKM 308
+A K+ +M
Sbjct: 732 NDKAEKILXEM 742
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 19/178 (10%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
K+ +G +PD + + +C L + ++G P+ IT ++ L
Sbjct: 87 KKFESNGATPDLCTLNILMNCFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFR 146
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+I +AL ++++ + F L++ Y T+I+ C E +L
Sbjct: 147 GEIKKALYFHDQVVAQG------------FQLNQVS----YRTLINGLCKTGETKAVARL 190
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
+K+E S KPD + + C K + D +L EM+ KGI P T+ L
Sbjct: 191 LRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDA---CDLYSEMIVKGISPNVVTYNALV 245
>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 804
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 156/369 (42%), Gaps = 60/369 (16%)
Query: 82 ALSEDHETDVDKVSEI---LRKRYP--SPDKVVEALK--------CFCFTWAKTQTGYMH 128
A+S + T +D V+ I L + P SP V +K F WA ++ +
Sbjct: 31 AISNEVLTIIDSVNPIEPALESKVPFLSPSIVTYIIKNPPNSLLGFRFFIWA-SKFRRLR 89
Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEI---------DELSNGYVSLAAMSTVMRRLDTR 179
+ ++N +++ L K F L W+++KEI D + + A M + + +++
Sbjct: 90 SWVSHNMIIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESF 149
Query: 180 AM-------------SVLMDTLVKRNSVAHAYKVF---LKFKDCISLSSQIFDVLIHGWC 223
M + ++ +V++ V A ++ LK +C+ + F +LI G C
Sbjct: 150 EMMKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKL-NCLP-NIATFSILIDGMC 207
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
K+ K+ A + EM Q P+ ++YT I C+ + M++ GC P +
Sbjct: 208 KSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSV 267
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSA 343
T ++H K ++ EAL + + + D + D YS LI L +A RF
Sbjct: 268 TYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRF---------- 317
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
+A +K+ E + KPD + +K + KD + +LN EM +G+V
Sbjct: 318 ------EDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLN---EMTERGLV 368
Query: 404 PQESTHKML 412
P + L
Sbjct: 369 PDTHCYNAL 377
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 22/231 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
++++ L + AY++F+ KD CI S ++ L+HG+CK + D A +K
Sbjct: 235 TIIISGLCQAQKADVAYRLFIAMKDHGCIP-DSVTYNALLHGFCKLGRVDEALGLLKYFE 293
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ + D Y+C I+ R + F ++M E KP VI TI+M L KA +
Sbjct: 294 KDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFK 353
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLI------FILSKAVRFLI-------------YNTMI 340
+AL++ +M + DT Y++LI +L +A + Y +I
Sbjct: 354 DALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILI 413
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
C G+A ++ ++E+ C P T + C ++ L+
Sbjct: 414 CGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLF 464
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 118/308 (38%), Gaps = 46/308 (14%)
Query: 118 TWAKTQTGYMHTPET--YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR 175
W + T + P+ Y M++ L K+ KF L+ E+ E G V
Sbjct: 322 VWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTE--RGLVP---------- 369
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQK 233
DT + L+ + A + L+ DC S S+ + +LI G C++ AQ+
Sbjct: 370 -DTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFS-SACTYTILICGMCRSGLVGDAQQ 427
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS-----------V 282
EM +HG P V++ I+ +C+ + K +M E G PS V
Sbjct: 428 IFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKM-EIGRNPSLFLRLSQGANRV 486
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISS 342
+ + +E+ LK Y + LTD+ F ++I YN +I
Sbjct: 487 LDTASLQTMVEQLCDSGLILKAYNILMQ---LTDSGFAPNII----------TYNILIHG 533
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C A KL ++++ PD T+ + R +D VL+ ++L G
Sbjct: 534 FCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLD---QILKNGC 590
Query: 403 VPQESTHK 410
P +K
Sbjct: 591 TPITEVYK 598
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/193 (18%), Positives = 73/193 (37%), Gaps = 34/193 (17%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T+NA+++ K+ L +++ N + L R LDT ++ +++ L
Sbjct: 443 TFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDS 502
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
+ AY + ++ D GF+P+ ++Y
Sbjct: 503 GLILKAYNILMQLTD----------------------------------SGFAPNIITYN 528
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
I +C+ + KE+Q KG P +T +++ L A + +A V +++ +
Sbjct: 529 ILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKN 588
Query: 312 DCLTDTSFYSSLI 324
C T Y S +
Sbjct: 589 GCTPITEVYKSFM 601
>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22470, mitochondrial; Flags: Precursor
gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 113/267 (42%), Gaps = 27/267 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
DT + L+D K N + A ++F + K C + +LI+ +CK ++ D +
Sbjct: 349 DTITYNSLIDGFCKENCLHEANQMFDLMVSKGC-EPDIVTYSILINSYCKAKRVDDGMRL 407
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+E+ G P+ ++Y + +C+ +EM +G PSV+T I++ L
Sbjct: 408 FREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCD 467
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LI 335
++ +AL+++EKM+ Y+ +I + A + +
Sbjct: 468 NGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVT 527
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML-VLNLM 394
YN MI C + A L +K++ED C PD T+ + G++ + L+
Sbjct: 528 YNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTY----NILIRAHLGGSGLISSVELI 583
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSL 421
EM G ST KM+ + L + L
Sbjct: 584 EEMKVCGFSADSSTIKMVIDMLSDRRL 610
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 114/258 (44%), Gaps = 18/258 (6%)
Query: 72 LNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPE 131
L+E +++ +S+ E D+ S IL Y +V + ++ F +K G +
Sbjct: 366 LHEANQMFDLMVSKGCEPDIVTYS-ILINSYCKAKRVDDGMRLFREISSK---GLIPNTI 421
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +V +S K EL +E+ VS +V+ +L+D L
Sbjct: 422 TYNTLVLGFCQSGKLNAAKELFQEM-------VSRGVPPSVV------TYGILLDGLCDN 468
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A ++F K K ++L I++++IHG C K D A + G PD V+Y
Sbjct: 469 GELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTY 528
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I C++ + D ++M+E GC P T I++ A + ++++ E+MK
Sbjct: 529 NVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKV 588
Query: 311 DDCLTDTSFYSSLIFILS 328
D+S +I +LS
Sbjct: 589 CGFSADSSTIKMVIDMLS 606
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/413 (21%), Positives = 160/413 (38%), Gaps = 94/413 (22%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVK--EIDELSNGYV 164
KV +A+ F + Q+ + TP +N + A+ ++K++ L+ K E++ + +
Sbjct: 50 KVNDAIDLF---ESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMY 106
Query: 165 SLAAMS-------------TVMRRL-------DTRAMSVLMDTLVKRNSVAHAYKVFLKF 204
++ M +V+ R DT S L++ V+ A + +
Sbjct: 107 TMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRM 166
Query: 205 ------KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258
D +++S+ LI+G C + A + M ++GF PD V+Y + C
Sbjct: 167 VEMKQRPDLVTVST-----LINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLC 221
Query: 259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318
+ + ++M+E+ K SV+ +IV+ +L K +AL ++ +M+ D
Sbjct: 222 KSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVV 281
Query: 319 FYSSLIF----------------------ILSKAVRF----------------------- 333
YSSLI I+ V F
Sbjct: 282 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 341
Query: 334 ---------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
+ YN++I C + A ++ + C+PD T++ + C KR+
Sbjct: 342 ITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRV 401
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHAT 436
DGM L RE+ SKG++P T+ L + L AKE E+++
Sbjct: 402 DDGM---RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 451
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 124/303 (40%), Gaps = 47/303 (15%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+ G+ TY ++ L KS L +L ++++E R + +
Sbjct: 202 VEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEE---------------RNIKASVV 246
Query: 182 --SVLMDTLVKRNSVAHAYKVFLKFK------DCISLSSQIFDVLIHGWCKTRKSDYAQK 233
S+++D+L K S A +F + + D ++ SS LI G C K D K
Sbjct: 247 QYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSS-----LIGGLCNDGKWDDGAK 301
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
++EM PD V+++ I+ + +E + EM +G P IT ++
Sbjct: 302 MLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC 361
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
K ++EA ++++ M S C D + Y+ +I+S C + +
Sbjct: 362 KENCLHEANQMFDLMVSKGCEPD----------------IVTYSILINSYCKAKRVDDGM 405
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
+L ++I P+ T+ + C ++ L +EM+S+G+ P T+ +L
Sbjct: 406 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK---ELFQEMVSRGVPPSVVTYGILL 462
Query: 414 EEL 416
+ L
Sbjct: 463 DGL 465
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 103/225 (45%), Gaps = 22/225 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F LI + K K A++ EM G +PD ++Y I+ +C+E + + M
Sbjct: 318 FSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMV 377
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF--------- 325
KGC+P ++T +I++++ KAK++ + ++++ ++ S + +T Y++L+
Sbjct: 378 SKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLN 437
Query: 326 --------ILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++S+ V + Y ++ C E AL++ +K+++ + +
Sbjct: 438 AAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIII 497
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C+ ++ D +L + KG+ P T+ ++ L KK
Sbjct: 498 HGMCNASKVDDAW---SLFCSLSDKGVKPDVVTYNVMIGGLCKKG 539
>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 545
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 109/265 (41%), Gaps = 23/265 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D S L+ + +A +F + D I+ + F +LI G+CK K A+ +
Sbjct: 232 DVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVL 291
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M + D V+Y ++ YC K K M ++G P V + +I+++ K
Sbjct: 292 AVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKI 351
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIY 336
K + EA+K++E+M + Y+SL+ L K+ R + Y
Sbjct: 352 KMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITY 411
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N+++ + C + A+ L KI+E +PD T+ + C R+ D V +
Sbjct: 412 NSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVF---ED 468
Query: 397 MLSKGIVPQESTHKMLAEELEKKSL 421
+L KG P T+ L K
Sbjct: 469 LLVKGYSPNIYTYTSLINGFCNKGF 493
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 16/179 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN++V+ L KS + ELV E+ + G S + + ++D + K
Sbjct: 375 TYNSLVDGLCKSGRTSCALELVDEMHD--RGQPS-----------NIITYNSILDAICKN 421
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFD--VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
N V A + K K+ + IF VLI+G CK + D AQK +++ G+SP+ +
Sbjct: 422 NHVDKAIVLLTKIKE-KGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYT 480
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
YT I +C + F + L +M++ GC P+ IT I++H+L + + +A K+ +M
Sbjct: 481 YTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREM 539
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 128/275 (46%), Gaps = 37/275 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN++++ + LVK++++ + + +A D + S++++ K
Sbjct: 305 TYNSLMDG----------YCLVKQVNKAKSLFNVMAQRGVTP---DVWSYSIMINGFCKI 351
Query: 192 NSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
V A K+F + C + + ++ L+ G CK+ ++ A + + EM G + ++
Sbjct: 352 KMVDEAMKLFEEMH-CKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIIT 410
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y ++ C+ K L +++EKG +P + T T++++ L K ++ +A KV+E
Sbjct: 411 YNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFE--- 467
Query: 310 SDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
D L YS I+ Y ++I+ C + L + K++++ C P+
Sbjct: 468 --DLLVKG--YSPNIY---------TYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAI 514
Query: 370 THARSLKMCCHKKRMKD-GMLVLNLMREMLSKGIV 403
T+ ++ H KD L+REM+++G++
Sbjct: 515 TY----EILIHSLFEKDENDKAEKLLREMIARGLL 545
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 91/214 (42%), Gaps = 17/214 (7%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++LM+ + + ++ VF K K + F +LI G C + A ++
Sbjct: 97 NLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVA 156
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
GF D VSY I CR + + L+ + K +P+V+ + ++ ++ K K + +
Sbjct: 157 QGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVND 216
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A +Y +M S D YSSL IS CV + A+ L ++
Sbjct: 217 AFDLYCEMVSKRISPDVVTYSSL----------------ISGFCVVGKLKYAVDLFNRMI 260
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
D+ P+ T + + C + ++++ VL +M
Sbjct: 261 SDNINPNVYTFSILIDGFCKEGKVREAKNVLAVM 294
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 77/187 (41%), Gaps = 22/187 (11%)
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P + + + + K ++ ++M+ G KP ITC ++M+ + I + V
Sbjct: 56 PPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSV 115
Query: 305 YEKMKSDDCLTDTSFYSSLIFILS------KAVRF-------------LIYNTMISSACV 345
+ K+ D ++ LI L KA+ F + Y T+I+ C
Sbjct: 116 FAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCR 175
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
E A++L ++++ +P+ ++ + C K + D +L EM+SK I P
Sbjct: 176 VGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDA---FDLYCEMVSKRISPD 232
Query: 406 ESTHKML 412
T+ L
Sbjct: 233 VVTYSSL 239
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 51/344 (14%)
Query: 132 TYNAMVEALGKSKK----------------------FGLMWELVKEIDELSNGYVSLAAM 169
TY +V ALGK+ + + L+ + +++ +L A M
Sbjct: 137 TYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEM 196
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKS 228
+ ++L+D L V A K+F K D S S + L++G K+ +
Sbjct: 197 KRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRV 256
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+ A K +EM G + D V+Y + + + +V +KEM KG P + +
Sbjct: 257 EEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTI 316
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-----FILSKAVRFLI-------- 335
M AL KA + A +V+ +M C D Y+ LI F + R ++
Sbjct: 317 MDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGF 376
Query: 336 ------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
YN++I + A + +++E C+PD T+ R + M + +
Sbjct: 377 IPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKR---GENQR 433
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
L ++M KG+ P ++ + + L +R+DE L
Sbjct: 434 AARLFQQMKDKGVEPDTLSYAVRIDGLA------FDDRLDEALV 471
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 128/292 (43%), Gaps = 35/292 (11%)
Query: 124 TGYMHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
TG +P+ TY+ +V LGKS G + E K E+ + V++ D
Sbjct: 232 TGDGCSPDSYTYSTLVNGLGKS---GRVEEAHKVFREMVDRGVAV----------DLVNY 278
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L+ TL K ++ +K+ + + + F+ ++ K K D A++ M +
Sbjct: 279 NSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVE 338
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD +SY I+ Y R D + L+EM E G P T ++H L Q+ E
Sbjct: 339 SGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDE 398
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A V E+M++ C D Y+ L+ +L K R E A +L Q+++
Sbjct: 399 AFAVLEEMETAGCRPDVVTYNRLMDMLGK----------------RGENQRAARLFQQMK 442
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ +PD ++A + R+ + ++ L ++M + G ++ +++L
Sbjct: 443 DKGVEPDTLSYAVRIDGLAFDDRLDEALV---LFKDMKAVGCPVDKAMYRIL 491
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 118/293 (40%), Gaps = 35/293 (11%)
Query: 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLV 189
P T ++ A G+ K G ++L + + S A TV A + L+D LV
Sbjct: 30 PNTLVKLITAYGRGNKSGDAFDLFNQAE-------SFACSPTV------HAFTKLIDILV 76
Query: 190 KRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
A V+ K K C L ++VLI + ++ + D A + +EM G PD
Sbjct: 77 NSGEFERAELVYKKLVQKGC-QLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDE 135
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+Y + + ++ M E+G P++ T ++M A K Q+ AL ++ +
Sbjct: 136 YTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAE 195
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
MK F S++ YN ++ + C G A KL K+ D C PD
Sbjct: 196 MKR------RGFQPSVV----------TYNILLDALCSAGRVGAARKLFHKMTGDGCSPD 239
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
T++ + R+++ V REM+ +G+ + L L K
Sbjct: 240 SYTYSTLVNGLGKSGRVEEAHKVF---REMVDRGVAVDLVNYNSLLATLAKAG 289
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 95/216 (43%), Gaps = 23/216 (10%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI----------------DELSNGYVSLAAMSTVMRR 175
YN+++ L K+ +W+L+KE+ D L AA R
Sbjct: 277 NYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARM 336
Query: 176 L------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL-SSQIFDVLIHGWCKTRKS 228
+ D + ++L+D+ + A A ++ + + + ++ ++ LIH +
Sbjct: 337 VESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQV 396
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A ++EM G PD V+Y ++ + + ++ ++M++KG +P ++ +
Sbjct: 397 DEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVR 456
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ L ++ EAL +++ MK+ C D + Y LI
Sbjct: 457 IDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILI 492
>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
Length = 632
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 125/309 (40%), Gaps = 40/309 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEID---------------------ELSNGY 163
G+ HT TY MV LGK+++F M L++E+ E+ N
Sbjct: 216 GFAHTTITYCKMVHILGKARQFQSMVALIQEMGKEGALCMDAFKIAIKSFAAAGEIKNAV 275
Query: 164 VSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWC 223
M T + + L+ L + A +VF + +D + + + L+ WC
Sbjct: 276 GVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTALMLAWC 335
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
R A + EM ++G PD V + IE R + + + M+ KG P+V
Sbjct: 336 NARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVW 395
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSA 343
T T+++ K ++ A++ +E+M+ C D + Y+ L+ A R
Sbjct: 396 TYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRM---------- 445
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
L +++ + C PD T+ +K+ ++ D + ++M+ KG+
Sbjct: 446 ------DRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDD---AARIYKKMIKKGLE 496
Query: 404 PQESTHKML 412
P T+ M+
Sbjct: 497 PTIHTYNMM 505
>gi|242078797|ref|XP_002444167.1| hypothetical protein SORBIDRAFT_07g011860 [Sorghum bicolor]
gi|241940517|gb|EES13662.1| hypothetical protein SORBIDRAFT_07g011860 [Sorghum bicolor]
Length = 520
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 134/304 (44%), Gaps = 43/304 (14%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
G + ++ V A GK+++F L W +V+ + N V L RAM +
Sbjct: 130 AGLPPPADAWHLAVWAAGKARRFDLAWAVVRR---MRNRGV-----------LTGRAMVI 175
Query: 184 LMDTLVKRNSVAHAYKVF---LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
LM+ N V A K F KFK + +F L+ CK++ + A++ + + +
Sbjct: 176 LMERYAAANEVNKAVKTFDVMEKFK--VESDQSVFYSLLRALCKSKNIEDAEELL--LLR 231
Query: 241 HGFSP-DGVSYTCFIEHYCRE-KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
F P + ++ +C D + +EM P ++ T+++ K +
Sbjct: 232 KKFFPLSAEGFNIILDGWCNVITDLAEAKRVWREMSNHCITPDGMSYTLMISCFSKVGSL 291
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK 358
++ L+VY++MK + Y+SL+++L++ CV+ +A + K
Sbjct: 292 FDTLRVYDEMKKRGWIPGIGVYNSLVYVLTR------------ENCVK----DAHNIFSK 335
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST-HKMLAEELE 417
+ ++ +PD ET+ + C ++ + +V M M+ KGIVP ST H L +E
Sbjct: 336 LTDEGLQPDVETYNSMIVPLCESCKLDEARVV---MESMILKGIVPTISTYHAFLKQEGI 392
Query: 418 KKSL 421
+SL
Sbjct: 393 DESL 396
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 67/175 (38%), Gaps = 27/175 (15%)
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A ++ G PD +Y I C + ++ M KG P++ T H
Sbjct: 329 AHNIFSKLTDEGLQPDVETYNSMIVPLCESCKLDEARVVMESMILKGIVPTIST----YH 384
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEG 350
A K + I E+LK+ +KMK D C + + L +F + N E G
Sbjct: 385 AFLKQEGIDESLKLLQKMKEDGCGPKSDTFLMLF------DKFFLLN----------ESG 428
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML--VLNLMREMLSKGIV 403
NAL++ ++ + P RS M + +K G + L EM KG
Sbjct: 429 NALRVWNEMRKYKISP-----VRSHYMTVVEGLVKHGCIPRALEYYDEMKEKGFA 478
>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 587
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/381 (20%), Positives = 155/381 (40%), Gaps = 53/381 (13%)
Query: 63 LASWVESLKLNEQSRISSHALSEDHETDVDK-VSEILRKRYPS-PDKVVEALKCFCFTWA 120
L+S V +L+ R+ +L ++ V ++ R+ P+ +VVEA
Sbjct: 63 LSSLVHRGELDAALRVVESSLCPPDVALANRLVRDLCRRGRPADAARVVEA--------- 113
Query: 121 KTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRA 180
G T TY+A+ + + + +V + L + Y M + R R
Sbjct: 114 ---CGSAATAVTYSALADGYCRVGRLDEARRVVDGMPVLPSAYAYNPLMHALCVRGQVRD 170
Query: 181 MSVLMDTLVKRNSV---------------AHAYKVFLKFKDCISL-----SSQIFDVLIH 220
VL+D ++ R Y+ ++ D + + ++ ++V++
Sbjct: 171 ALVLLDNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMD 230
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G C+ DYA++ + + +G +P+ V+Y ++ + V+ + EM + C P
Sbjct: 231 GMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPP 290
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340
S T ++V+ +L + A+++ EKM DC + + YN ++
Sbjct: 291 SEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTAN----------------IVTYNAVV 334
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
S C + AL L ++ D CKP+ T+ +K C+ +R +D +LM +M
Sbjct: 335 SGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAE---DLMAKMSQT 391
Query: 401 GIVPQESTHKMLAEELEKKSL 421
+P T + L +K L
Sbjct: 392 DCLPDILTFNTIIGFLCQKGL 412
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 93/203 (45%), Gaps = 25/203 (12%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++L+ G C + + A+ M +M Q PD +++ I C++ + K+M
Sbjct: 365 YNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMP 424
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD------------DCLTDTSFYSS 322
EKGC P+ +T + V+ L K ++ ++L++ +M S +CL +
Sbjct: 425 EKGCCPNSVTYSSVIEGLAKTGKMEQSLELLNEMGSKGFNPEINYHLLAECLNEEDKLVE 484
Query: 323 LIFILSK------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
I ++ K + + ++YNT++ C + A+ + + D C PD T++ ++
Sbjct: 485 AIQMVHKLQDTGISPQAVLYNTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQ 544
Query: 377 MCCHKKRMKDGMLVLNLMREMLS 399
H+ MK+ RE+LS
Sbjct: 545 GLAHEGYMKEA-------RELLS 560
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/313 (20%), Positives = 133/313 (42%), Gaps = 39/313 (12%)
Query: 126 YMHTPET--YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
Y TP T YN +++ L + + WE V+E+ +A M + +SV
Sbjct: 251 YGCTPNTVNYNTVLKGLRTAGR----WEDVEEL---------IAEMFSENCPPSEATLSV 297
Query: 184 LMDTLVKRNSVAHAYKVFLKFK--DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
++ +L + A ++ K DC + + ++ ++ G C+ D A + M
Sbjct: 298 VISSLCQEGLFQRAIRLLEKMSKHDCTA-NIVTYNAVVSGLCEQGHVDGALYLLSNMQTD 356
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G P+ +Y ++ C + + + + +M + C P ++T ++ L + +A
Sbjct: 357 GCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQA 416
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTMISSA------------CV 345
++V+++M C ++ YSS+I L+K + + N M S C+
Sbjct: 417 VEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKMEQSLELLNEMGSKGFNPEINYHLLAECL 476
Query: 346 RSEEG--NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
E+ A+++ K+++ P + L C + ++++ M+S G +
Sbjct: 477 NEEDKLVEAIQMVHKLQDTGISPQAVLYNTILLGLCRNGKTDQA---IDILSNMVSDGCM 533
Query: 404 PQESTHKMLAEEL 416
P EST+ +L + L
Sbjct: 534 PDESTYSILIQGL 546
>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
Length = 818
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 138/317 (43%), Gaps = 38/317 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T+N +V +L + GL+ ++ ++++S S D + ++D L
Sbjct: 498 TFNTVVASLCQK---GLVDRAIRVVEQMSENGCSP----------DIVTYNCIIDGLCNE 544
Query: 192 NSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ + A ++ + C + F+ L+ G C + + A++ M M + PD +++
Sbjct: 545 SCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTF 604
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I C++ + TLK M E GC P+ T +IV+ AL KA + AL++ M +
Sbjct: 605 NTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTN 664
Query: 311 DDCLTDTSFYSSLIFILSKA---------VRFLI----------YNTMISSACVRSEEGN 351
D Y+++I L+KA +R ++ Y ++ C
Sbjct: 665 G--TPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDR 722
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A+++ +++++ PD + L C +R L ++ M+S G +P EST+ +
Sbjct: 723 AVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTD---LAIDCFAHMVSSGCMPDESTYVI 779
Query: 412 LAEELEKKSLGNAKERI 428
L E L L + +R+
Sbjct: 780 LLEALAYGGLLDEAKRL 796
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 122/307 (39%), Gaps = 59/307 (19%)
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQI--------FDVLIHGWCKTRKSDYAQKAMKEM 238
T+V N++ + Y + +D L + + F+ LI C + A +M
Sbjct: 218 TVVTYNTMVNGYCRAGRIEDARRLINGMPFPPDTFTFNPLIRALCVRGRIPDALAVFDDM 277
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
G SP V+Y+ ++ C+E +R+ L EM+ KGC+P ++T ++++A+ +
Sbjct: 278 LHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDV 337
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTM 339
EAL + + S C D Y+ ++ L + R+ + +NT+
Sbjct: 338 DEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTI 397
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN------- 392
++S C + A+++ + E C D T++ L C R+ D + +L+
Sbjct: 398 VTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGC 457
Query: 393 -------------------------LMREMLSKGIVPQESTHKMLAEELEKKSLGNAKER 427
LM EML P E T + L +K L + R
Sbjct: 458 KPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIR 517
Query: 428 IDELLTH 434
+ E ++
Sbjct: 518 VVEQMSE 524
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 124/292 (42%), Gaps = 35/292 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY ++++L S+++ KE++EL LA M++ D + ++ +L ++
Sbjct: 358 TYTPVLKSLCGSERW-------KEVEEL------LAEMTSNNCAPDEVTFNTIVTSLCQQ 404
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
V A +V + C++ + ++ G C + D A + + + +G PD ++
Sbjct: 405 GLVDRAIEVVDHMSEHGCVA-DIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIA 463
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
YT ++ C + + + + + EM C P +T V+ +L + + A++V E+M
Sbjct: 464 YTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMS 523
Query: 310 SDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
+ C D + YN +I C S +A++L ++ CKPD
Sbjct: 524 ENGCSPD----------------IVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIV 567
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
T LK C R +D LM M+ P E T + L +K L
Sbjct: 568 TFNTLLKGLCGVDRWEDAE---QLMANMMRSNCPPDELTFNTVITSLCQKGL 616
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 120/284 (42%), Gaps = 42/284 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI-------DELSNGYV--SLAAMSTVMRRLD----- 177
T+N ++ GKS K ++EL KE+ D ++ V SLA + + + LD
Sbjct: 825 TFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDL 884
Query: 178 --------TRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKS 228
R L+D L K + A ++F + D + IF++LI+G+ K +
Sbjct: 885 VSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDT 944
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+ A + K M G PD SYT ++ C + Y E++ G P I +
Sbjct: 945 ETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRI 1004
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR---------------- 332
++ L K++++ EAL +Y +M++ + D Y+SL+ L A
Sbjct: 1005 INGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGL 1064
Query: 333 ---FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
YN +I + +A + + + D C P+ T+A+
Sbjct: 1065 EPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQ 1108
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 137/325 (42%), Gaps = 46/325 (14%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+TY+A++ ALGK + ++ L+KE+++L R + ++ + L +
Sbjct: 228 KTYSALMVALGKKRDSEMVMVLLKEMEDLG-------------LRPNVYTFTICIRVLGR 274
Query: 191 RNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ AY++F + D + VLI C + + A++ +M +G PD V
Sbjct: 275 AGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVI 334
Query: 250 YTCFIEHYCREKDFRKVDYTLKE----MQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
Y ++ + DF +D T KE M+ G P V+T TI++ L KA+ EA +
Sbjct: 335 YITLLDKF---NDFGDLD-TFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATF 390
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVR 346
+ M+ L + Y++LI L +A R Y T I
Sbjct: 391 DVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKS 450
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
E G A++ +K++ P+ SL R+++ + N +RE G+ P
Sbjct: 451 GETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRE---NGLAPDS 507
Query: 407 STHKMLAEELEKKSLGNAKERIDEL 431
T+ M+ + K +G E ++ L
Sbjct: 508 VTYNMMMKCYSK--VGQVDEAVNLL 530
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 131/310 (42%), Gaps = 44/310 (14%)
Query: 127 MHTPETYNAMVEAL---GKSKKFGLMWELVKE--IDELSNGYVSLAAMSTVMRRLDTRAM 181
+HT ET N M+E L K + ++E +++ I + Y+++ ++ R R M
Sbjct: 119 LHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSI--RGGLRQM 176
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+ +++ + K V +AY ++ LIH ++ A + + M
Sbjct: 177 TTVLNKMRKAGFVLNAYS---------------YNGLIHLLIQSGFCGEALEVYRRMVSE 221
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G P +Y+ + +++D V LKEM++ G +P+V T TI + L +A +I EA
Sbjct: 222 GLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEA 281
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISS 342
+++ +M + C D Y+ LI L A + +IY T++
Sbjct: 282 YEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDK 341
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
+ + ++E D PD T + + C + + ++MR+ +GI
Sbjct: 342 FNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRK---QGI 398
Query: 403 VPQESTHKML 412
+P T+ L
Sbjct: 399 LPNLHTYNTL 408
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 112/259 (43%), Gaps = 27/259 (10%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+ L K +AY++F KF + +S + ++ LI + ++ A K+M
Sbjct: 758 LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G +PD ++ + + + ++ KEM + CKP IT IV+ +L K+ + +A
Sbjct: 818 GCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKA 877
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
L + + S D Y LI L+K R EE A++L +++ +
Sbjct: 878 LDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRL--------------EE--AMRLFEEMSD 921
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
CKP+C + ++ D L + M+++GI P ++ +L + L
Sbjct: 922 YGCKPNCAIFNILIN---GYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAG- 977
Query: 422 GNAKERIDELLTHATEQRT 440
R+DE L + E ++
Sbjct: 978 -----RVDEALYYFNELKS 991
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 127/301 (42%), Gaps = 53/301 (17%)
Query: 119 WAKTQT-GYMHTPETYNAMVEALGKSKKFG---LMWELVKEIDELSN---------GYVS 165
W++ + GYM T+ +V+ L K++ F ++++++ L N G +
Sbjct: 355 WSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLR 414
Query: 166 LAAMSTVMRRLDT-RAMSV---------LMDTLVKRNSVAHAYKVFLKFK------DCIS 209
+ ++ LDT ++ V +D K A + F K K + ++
Sbjct: 415 AGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVA 474
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
++ ++ + G + K+ + ++E +G +PD V+Y ++ Y + +
Sbjct: 475 CNASLYSLAEMGRLREAKTMF--NGLRE---NGLAPDSVTYNMMMKCYSKVGQVDEAVNL 529
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
L EM GC+P VI ++ +L KA ++ EA +++++MK Y++L+ L K
Sbjct: 530 LSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGK 589
Query: 330 AVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
R + +NT++ C E ALK+ K+ CKPD T
Sbjct: 590 EGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLT 649
Query: 371 H 371
+
Sbjct: 650 Y 650
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 89/234 (38%), Gaps = 23/234 (9%)
Query: 113 KCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LS 160
K F + + + TP TY +++ L K + L +E+ + L
Sbjct: 876 KALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILI 935
Query: 161 NGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-IS 209
NGY + T + R D ++ ++L+D L V A F + K +
Sbjct: 936 NGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLD 995
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
++ +I+G K+++ + A EM G PD +Y + + +
Sbjct: 996 PDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRM 1055
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+E+Q G +P V T ++ ++ A VY+ M D C + Y+ L
Sbjct: 1056 YEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR---LDTR 179
+ G TYN M++ K V ++DE N +S ++R D
Sbjct: 500 ENGLAPDSVTYNMMMKCYSK----------VGQVDEAVN------LLSEMIRNGCEPDVI 543
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
++ L+D+L K V A+++F + KD +S + ++ L+ G K + A + + M
Sbjct: 544 VVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESM 603
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
SP+ +S+ ++ +C+ + +M CKP V+T V++ L K ++
Sbjct: 604 IXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKV 663
Query: 299 YEALKVYEKMK 309
A + ++K
Sbjct: 664 NHAFWFFHQLK 674
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ + LI K + D A + M SP V+Y + +E +K + M
Sbjct: 544 VVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESM 603
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
K C P+ I+ ++ K ++ ALK++ KM DC D Y+++I+ L K
Sbjct: 604 IXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIK 659
>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 947
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 98/418 (23%), Positives = 163/418 (38%), Gaps = 61/418 (14%)
Query: 56 EDFVIPSLASWVESLKLNEQSRISSHA------LSEDHETDVDKVSEILRKRYPSPDKVV 109
E V +++ + E L++ QS + +H D V ++ KR +PD+V
Sbjct: 407 EGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVS 466
Query: 110 ------------EALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEID 157
E + GY + +N M+ K +K E +
Sbjct: 467 YCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMK 526
Query: 158 ELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFD 216
EL G+ D L+D K +V A+KV K K+ I S ++++
Sbjct: 527 EL--GFEP-----------DGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYN 573
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
LI G K++K+ + EM G SP+ V+Y I +C E K +M EK
Sbjct: 574 SLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEK 633
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY---------------- 320
G P+VI C+ ++ +L + +I EA + +KM + D D ++
Sbjct: 634 GFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKI 693
Query: 321 ------SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
SS F L +V +YN I+ C + +A K+ + PD T+
Sbjct: 694 ADTLDESSKSFSLPNSV---VYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTL 750
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK-SLGNAKERIDEL 431
+ + D +L EML +G+ P T+ L L K +L A++ D+L
Sbjct: 751 IHGYSAAGNVNDA---FSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKL 805
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 16/189 (8%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
+S ++++ I G CK+ K D A+K + GFSPD +Y I Y +
Sbjct: 708 NSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLR 767
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
EM ++G P++IT +++ L K+ + A K+++K+ + A
Sbjct: 768 DEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLH----------------LKGLA 811
Query: 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
+ YN +I C AL LR K+ ++ P T++ + C + M +
Sbjct: 812 PNVISYNILIDGYCKNGNTREALDLRNKMLKEGISPSLITYSALIYGFCKQGDMGKATNL 871
Query: 391 LNLMREMLS 399
L+ MRE+ +
Sbjct: 872 LDEMRELFA 880
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 114/302 (37%), Gaps = 78/302 (25%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV-----------LIHGWCK 224
LD A VL+D Y K D + L ++ +V LI+G+CK
Sbjct: 322 LDEYAYGVLID----------GYCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCK 371
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
+ A++ + M P+ SY+ ++ +CRE K EM G + +V+T
Sbjct: 372 NGQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVVT 431
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL---------- 334
++ L + +AL V+ M D Y +L+ +L K F
Sbjct: 432 HNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDIL 491
Query: 335 ---------IYNTMISSAC-----VRSEE---------------------------GN-- 351
+NTMI+ C + +EE GN
Sbjct: 492 ARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVE 551
Query: 352 -ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A K+++K+E+++ P E + + K+ ++ V++L+ EM KG+ P T+
Sbjct: 552 EAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTRE---VMDLLSEMCLKGLSPNVVTYG 608
Query: 411 ML 412
L
Sbjct: 609 TL 610
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 113/260 (43%), Gaps = 26/260 (10%)
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF--DVLIHGWCKTRKSDYAQKAMK 236
R+ + L+ +LV++ ++A V+ + + +F ++++ +CK + A +K
Sbjct: 184 RSCNRLLSSLVRKGESSNAILVYDHINR-LGIVPDVFTCSIMVNAYCKDGWVNVAVDFVK 242
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM GF + V+Y I+ D + + LK M E+G + +T T+++ +
Sbjct: 243 EMDYLGFELNVVTYNSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTLTLLIKGYCRQC 302
Query: 297 QIYEALKVYEKM-KSDDCLTDTSFYSSLI------FILSKAVR-------------FLIY 336
++ EA KV +M +S+ + D Y LI + AVR I
Sbjct: 303 KLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRMNLFIC 362
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N +I+ C + A +L ++ + +P+ +++ + C + + + V N E
Sbjct: 363 NALINGYCKNGQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYN---E 419
Query: 397 MLSKGIVPQESTHKMLAEEL 416
ML GI TH L + L
Sbjct: 420 MLRVGIQSNVVTHNSLLKGL 439
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMF 239
+ L++ L K ++ A K+F K L+ + +++LI G+CK + A +M
Sbjct: 783 NALINGLCKSGNLDRAQKLFDKLH-LKGLAPNVISYNILIDGYCKNGNTREALDLRNKML 841
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+ G SP ++Y+ I +C++ D K L EM+E
Sbjct: 842 KEGISPSLITYSALIYGFCKQGDMGKATNLLDEMRE 877
>gi|224139118|ref|XP_002326772.1| predicted protein [Populus trichocarpa]
gi|222834094|gb|EEE72571.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/348 (20%), Positives = 147/348 (42%), Gaps = 52/348 (14%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
V +L + + + ++AL+ F ++ QT + +P+++ + L + + F W+L+
Sbjct: 75 VENVLGRLFAAHSNGLKALEFFKYSL-NNQTHFSPSPDSFEKTLHILARMRYFDKAWDLM 133
Query: 154 KEIDELSNGYVSLAAMSTVM--------------------------RRLDTRAMSVLMDT 187
EI + ++L +MS ++ R+ +VL+
Sbjct: 134 VEIGKTHPFLLTLKSMSIMLCKIAKFRSYEETLDAFEKMEKRVFVGRKFGVEEFNVLLRA 193
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+ A VF+K + + + ++L+ G+ ++R + EM + GF P
Sbjct: 194 FCTVRKLKEAKSVFVKMHERFPPNVKTMNILLLGFKESRDVTAMELFYHEMVKRGFKPSS 253
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
SY I+ YC++ F +EM+ C P++ T T ++H A+ +A +++++
Sbjct: 254 SSYGIRIDAYCKKGYFADALRIFEEMERANCLPTLETVTTLIHGAGVARNAMKARELFDE 313
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
+ + DT YN +ISS E +A++L ++E+++ D
Sbjct: 314 IPKRNLQADTG----------------AYNALISSLVKCREVKSAIQLMDEMEKNNIHYD 357
Query: 368 CET-HARSLKMCCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKML 412
T H L + MK G + V L +M+ + VP+ T ML
Sbjct: 358 DMTYHTMFLGL------MKSGSIEGVCELYHKMIDRNFVPKTRTVVML 399
>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
Length = 715
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 22/234 (9%)
Query: 202 LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
L +D I L +F++LI + K D A A EM Q GFSP+ V+YT I+ C+
Sbjct: 285 LMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAG 344
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
+M +G P +IT T ++H L + + K+ +M + + F +
Sbjct: 345 RVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLN 404
Query: 322 SLIFILSKAVRFL-------------------IYNTMISSACVRSEEGNALKLRQKIEED 362
+++ L K R L Y +I C+ + ++KL ++
Sbjct: 405 TIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSI 464
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+PD T++ L C R+ D L L REM SK + P T+ ++ L
Sbjct: 465 GLRPDNVTYSALLNGYCKNGRVDDA---LALYREMFSKDVKPNAITYNIILHGL 515
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 85/219 (38%), Gaps = 22/219 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ ++ CK + A ++ G PD VSYT I+ YC + + L M
Sbjct: 403 LNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMV 462
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
G +P +T + +++ K ++ +AL +Y +M S D + Y+ ++ L A R +
Sbjct: 463 SIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVV 522
Query: 335 -------------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
YN ++ C S AL++ Q + + + T +
Sbjct: 523 AAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMI 582
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
R+ D +L +L G+VP + ++ +
Sbjct: 583 VGLLKVGRIGDAK---SLFSAILPSGLVPDAIIYGLMIQ 618
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/237 (18%), Positives = 93/237 (39%), Gaps = 38/237 (16%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++++I+G K + D A EM GF P+ V+Y I+ C+ + K + L++M
Sbjct: 142 YNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMF 201
Query: 275 EK----------------GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318
+K G +P V+T ++++ K + EA +++ M D
Sbjct: 202 DKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAY 261
Query: 319 FYSSLIFILSKAVRFL-------------------IYNTMISSACVRSEEGNALKLRQKI 359
Y +L+ + + ++N +I + A+ ++
Sbjct: 262 TYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEM 321
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ P+ T+ + + C R++D ++ +M+S+G+ P T L L
Sbjct: 322 RQKGFSPNVVTYTTVIDILCKAGRVEDA---VSHFSQMVSEGLSPDIITFTSLIHGL 375
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 8/167 (4%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQ 232
+L ++++ L + + V A ++F L+ K+ L + F+++I G K + A+
Sbjct: 537 QLGINTYNIVLGGLCENSFVDEALRMFQGLRSKE-FQLEVRTFNIMIVGLLKVGRIGDAK 595
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ G PD + Y I+ + E + D M++ GC + T ++ L
Sbjct: 596 SLFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTLNAIVRKL 655
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS-----KAVRFL 334
+ + A K+ + + S LI I+S K V+FL
Sbjct: 656 LEKGDVRRAGTYLTKIDEKEYSVEASTAVLLISIVSERKYQKEVKFL 702
>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
Length = 783
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 121/295 (41%), Gaps = 42/295 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKE-------ID---------------ELSNGYVSLAAM 169
TYN ++ A K+ K G + ++ E ID +L Y L +
Sbjct: 425 TYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSA 484
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKS 228
S LD + +L+ K A ++ + K+ + S I ++ +I G C++RK
Sbjct: 485 SKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKV 544
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A + EM ++G PD +Y I +C E + K EM E KP V TC I+
Sbjct: 545 DQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNIL 604
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
+ L + + +ALK++ + S K + + YNT+ISS C +
Sbjct: 605 LRGLCREGMLEKALKLFNTLVSK----------------GKDIDVVTYNTIISSLCKEGK 648
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
NA L ++E PD T+ + R+K+ +M+ GIV
Sbjct: 649 FENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAE---EFTLKMVESGIV 700
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 117/262 (44%), Gaps = 29/262 (11%)
Query: 173 MRRLDTR----AMSVLMDTLVKRNSVAHAYKVFLKFKDCISL----SSQIFDVLIHGWCK 224
M+RL+ R + LM++LV+ S + KD I L ++ F++LI+G+C
Sbjct: 166 MKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCL 225
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
K A + +M + G PD VSY ++ + + ++ L +M+ KG P+ T
Sbjct: 226 ESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHT 285
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC 344
+++ + + EA KV E M ++ L YN +++ C
Sbjct: 286 YNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTV----------------WTYNMLVNGFC 329
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ A ++R ++E+ + PD T+ + C + +D V +L+ EM KG+
Sbjct: 330 NDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGC---SQWRDSSEVYSLIEEMDKKGVKC 386
Query: 405 QESTHKMLAEELEKKSLGNAKE 426
T+ ++ + + KK GN E
Sbjct: 387 NAVTYNIILKWMCKK--GNMTE 406
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/293 (21%), Positives = 117/293 (39%), Gaps = 35/293 (11%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
T+ + T TYN +V K + + E+++++ V+ D
Sbjct: 310 TRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMN-----------VLP--DVVTY 356
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L+D + + Y + + K + ++ +++++ CK A + +M +
Sbjct: 357 NTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEE 416
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
+G SPD V+Y I YC+ K + EM KG K T ++H L K++ E
Sbjct: 417 NGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDE 476
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN-ALKLRQKI 359
A + + D Y LI + E+G+ AL L ++
Sbjct: 477 AYNLLCSASKRGYILDEVSYGILIL-----------------GYFKDEKGDRALNLWDEM 519
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+E P T+ + C +++ + LN EML G+VP E+T+ ++
Sbjct: 520 KERQIMPSTITYNSVIGGLCQSRKVDQAIDKLN---EMLENGLVPDETTYNII 569
>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
Length = 948
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 101/211 (47%), Gaps = 19/211 (9%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
++L+SQ ++ +I+ CK + D A ++EM G +PD SY I H C + + +
Sbjct: 412 LTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAE 471
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ + + E+G + IT ++HAL + + +A+++ ++M C D
Sbjct: 472 HMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDV---------- 521
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+ YN +I + C +L L +++ E KP+ ++ + C ++R++D
Sbjct: 522 ------VSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRD- 574
Query: 388 MLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
L L ++ML++G+ P T+ L L K
Sbjct: 575 --ALELSKQMLNQGLAPDIVTYNTLINGLCK 603
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 108/260 (41%), Gaps = 20/260 (7%)
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
R+ +V++ L + + A A ++ + +D + ++ F V C+ +++ A ++
Sbjct: 140 RSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRANEALALLR 199
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M +HG PD V Y I C + + L EM GC V T V+ +
Sbjct: 200 GMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLG 259
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA---------------VRFLIYNTMIS 341
++ EA ++ ++M + C+ Y L+ L + + +++NT+I
Sbjct: 260 RVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIG 319
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
+ A +L + + C+PD T++ + C R+ + L+REM KG
Sbjct: 320 GCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISS---AVRLLREMEKKG 376
Query: 402 IVPQESTHKMLAEELEKKSL 421
P T+ ++ K +
Sbjct: 377 FAPNVVTYTIVLHSFCKNGM 396
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 16/178 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +IH + + A + KEM HG S D VSY I+ C++ + + L+EM
Sbjct: 489 YNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMA 548
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
EKG KP+ ++ I++ L K +++ +AL++ ++M + D +
Sbjct: 549 EKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPD----------------IV 592
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
YNT+I+ C AL L +K+ ++ PD T+ + C + + D ++LN
Sbjct: 593 TYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLN 650
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 98/221 (44%), Gaps = 18/221 (8%)
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
L+ +F+ +I G K A + + M G PD +Y+ + C+
Sbjct: 309 LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRL 368
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
L+EM++KG P+V+T TIV+H+ K + + E+M + ++ Y+ +I+ L K
Sbjct: 369 LREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCK 428
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG-M 388
R A+ L Q++ C PD ++ + C+ ++M++
Sbjct: 429 DGRM----------------DEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEH 472
Query: 389 LVLNLMRE-MLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
+ NL+ E +++ GI H +L + + ++ AKE I
Sbjct: 473 MFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMI 513
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMKE 237
+ N++ HA +++D + L+ ++ ++ LI CK D + ++E
Sbjct: 487 ITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE 546
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M + G P+ VSY I C+E+ R K+M +G P ++T +++ L K
Sbjct: 547 MAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGW 606
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLI 324
++ AL + EK+ +++ D Y+ LI
Sbjct: 607 MHAALNLLEKLHNENVHPDIITYNILI 633
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g31850, chloroplastic; AltName: Full=Protein PROTON
GRADIENT REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 153/367 (41%), Gaps = 55/367 (14%)
Query: 74 EQSRISSHALSEDHETDVDKVSEILR--KRYPSPDKVVEALKCFCFTWAKTQTGYM---H 128
+ S S + + + D+ E+ R K +P D F++ K+ G + H
Sbjct: 65 KSSDFSGSMIRKSSKPDLSSSEEVTRGLKSFPDTDS--------SFSYFKSVAGNLNLVH 116
Query: 129 TPETYNAMVEAL---GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
T ET N M+EAL GK ++ +++L+++ +++R DT +
Sbjct: 117 TTETCNYMLEALRVDGKLEEMAYVFDLMQK---------------RIIKR-DTNTYLTIF 160
Query: 186 DTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
+L + + A K ++ L++ ++ LIH K+R A + + M GF
Sbjct: 161 KSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFR 220
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P +Y+ + + +D V LKEM+ G KP+V T TI + L +A +I EA ++
Sbjct: 221 PSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEI 280
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACV 345
++M + C D Y+ LI L A + + Y T++
Sbjct: 281 LKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSD 340
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ + + ++E+D PD T + C + L++MR+ +GI+P
Sbjct: 341 NRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRD---QGILPN 397
Query: 406 ESTHKML 412
T+ L
Sbjct: 398 LHTYNTL 404
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 117/282 (41%), Gaps = 33/282 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G+ + +TY++++ LGK + + L+KE M T+ + + ++
Sbjct: 218 GFRPSLQTYSSLMVGLGKRRDIDSVMGLLKE-------------METLGLKPNVYTFTIC 264
Query: 185 MDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+ L + + AY++ + D + VLI C RK D A++ ++M
Sbjct: 265 IRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRH 324
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD V+Y ++ + +D V EM++ G P V+T TI++ AL KA EA
Sbjct: 325 KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFD 384
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS 363
+ M+ L + Y++LI L + R +AL+L +E
Sbjct: 385 TLDVMRDQGILPNLHTYNTLICGLLRVHRL----------------DDALELFGNMESLG 428
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
KP T+ + + + D + L +M +KGI P
Sbjct: 429 VKPTAYTYIVFID---YYGKSGDSVSALETFEKMKTKGIAPN 467
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 119/273 (43%), Gaps = 31/273 (11%)
Query: 190 KRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
K N+V+ A +F KF + + ++ +++LI G + + AQ ++ G PD
Sbjct: 761 KHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDV 820
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+Y ++ Y + ++ KEM C+ + IT IV+ L KA + +AL +Y
Sbjct: 821 ATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYD 880
Query: 308 MKSDDCLTDTS-FYSSLIFILSKAVRFL-------------------IYNTMISSACVRS 347
+ SD + T+ Y LI LSK+ R IYN +I+
Sbjct: 881 LMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAG 940
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
E A L +++ ++ +PD +T++ + C R+ +G L+ +E+ G+ P
Sbjct: 941 EADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEG---LHYFKELKESGLNPDVV 997
Query: 408 THKMLAEELEKKSLGNAKERIDELLTHATEQRT 440
+ ++ L K R++E L E +T
Sbjct: 998 CYNLIINGLGK------SHRLEEALVLFNEMKT 1024
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 25/232 (10%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEI-------DELSNGYV--SLAAMSTVMR 174
TG + TYN +++A GKS K ++EL KE+ + +++ V L V
Sbjct: 814 TGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDD 873
Query: 175 RLDTR--------------AMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLI 219
LD L+D L K + A ++F D + I+++LI
Sbjct: 874 ALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILI 933
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
+G+ K ++D A K M + G PD +Y+ ++ C + + KE++E G
Sbjct: 934 NGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLN 993
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT-DTSFYSSLIFILSKA 330
P V+ ++++ L K+ ++ EAL ++ +MK+ +T D Y+SLI L A
Sbjct: 994 PDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIA 1045
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 105/254 (41%), Gaps = 22/254 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D ++L+D L K + A+ +D I + ++ LI G + + D A +
Sbjct: 362 DVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELF 421
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M G P +Y FI++Y + D T ++M+ KG P+++ C +++L KA
Sbjct: 422 GNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKA 481
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ EA +++ +K + D+ + YN M+ E A+KL
Sbjct: 482 GRDREAKQIFYGLKDIGLVPDS----------------VTYNMMMKCYSKVGEIDEAIKL 525
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
++ E+ C+PD + R+ + + M+EM K P T+ L
Sbjct: 526 LSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLK---PTVVTYNTLLAG 582
Query: 416 LEKKSLGNAKERID 429
L K G +E I+
Sbjct: 583 LGKN--GKIQEAIE 594
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 75/352 (21%), Positives = 156/352 (44%), Gaps = 50/352 (14%)
Query: 92 DKVSEILRKRYPSPDKVVEALKCFCFTWAKTQ-TGYMHTPETYNAMVEALGKSKKFGLMW 150
D+V+ I S ++ ++++K F W++ + G++ T+ +V+AL K+ FG +
Sbjct: 327 DRVTYITLLDRFSDNRDLDSVKQF---WSEMEKDGHVPDVVTFTILVDALCKAGNFGEAF 383
Query: 151 E---LVKEIDELSNGYVSLAAMSTVMR--RLDTRAMSVL--MDTLVKRNSVAHAYKVFLK 203
+ ++++ L N + + ++R RLD A+ + M++L + + A+ Y VF+
Sbjct: 384 DTLDVMRDQGILPNLHTYNTLICGLLRVHRLDD-ALELFGNMESLGVKPT-AYTYIVFID 441
Query: 204 F----KDCIS------------LSSQIF--DVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+ D +S ++ I + ++ K + A++ + G P
Sbjct: 442 YYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVP 501
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D V+Y ++ Y + + + L EM E GC+P VI +++ L KA ++ EA K++
Sbjct: 502 DSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMF 561
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVR 346
+MK Y++L+ L K + + +NT+ C
Sbjct: 562 MRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKN 621
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
E ALK+ K+ + C PD T+ + ++K+ M + M++++
Sbjct: 622 DEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLV 673
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 17/194 (8%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
YN ++ GK+ + L K M R D + SVL+D L
Sbjct: 929 YNILINGFGKAGEADAACALFKR-------------MVKEGVRPDLKTYSVLVDCLCMVG 975
Query: 193 SVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEM-FQHGFSPDGVS 249
V F + K+ L+ + ++++I+G K+ + + A EM G +PD +
Sbjct: 976 RVDEGLHYFKELKES-GLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYT 1034
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y I + + E+Q G +P+V T ++ + + A VY+ M
Sbjct: 1035 YNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMV 1094
Query: 310 SDDCLTDTSFYSSL 323
+ +T Y L
Sbjct: 1095 TGGFSPNTGTYEQL 1108
>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
Length = 1380
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 22/221 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I G+CK A + +K+ GF PD V+Y I C E D + E Q
Sbjct: 294 YNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQ 353
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
KG KP ++ ++ L I AL+V +M + C D Y+ +I
Sbjct: 354 AKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNIS 413
Query: 325 ---FILSKAVR------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+++ A+ +NT+I C R + +AL+L +++ E PD T+ L
Sbjct: 414 DATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVL 473
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C ++ + V +EM+ KG P T+ +L E
Sbjct: 474 NGLCKAGKVNE---VNETFQEMILKGCHPNPITYNILIENF 511
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 19/200 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ LI G+CK K D A + ++ M+++G +PD ++Y + C+ +V+ T +EM
Sbjct: 434 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 493
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
KGC P+ IT I++ ++ ++ EA KV KM + D AV F
Sbjct: 494 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPD-------------AVSF- 539
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
NT+I C + A L QK+EE +T + K M + +
Sbjct: 540 --NTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMH---MAEKIF 594
Query: 395 REMLSKGIVPQESTHKMLAE 414
EMLSKG T+++L +
Sbjct: 595 DEMLSKGHRADSYTYRVLID 614
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 87/200 (43%), Gaps = 19/200 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G CK A ++ M G PD +Y I+ YC+ ++ LK+
Sbjct: 259 YNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAV 318
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
KG P +T +++ L + AL+++ + ++ D +
Sbjct: 319 FKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPD----------------IV 362
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+YN+++ C++ +AL++ ++ E+ C PD +T+ + C + D +V+N
Sbjct: 363 VYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMN-- 420
Query: 395 REMLSKGIVPQESTHKMLAE 414
+ + KG +P T L +
Sbjct: 421 -DAIMKGYLPDVFTFNTLID 439
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 14/181 (7%)
Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL 188
P TYN ++E +S K M E K I MS D + + L+
Sbjct: 500 NPITYNILIENFCRSNK---MEEASKVI----------VKMSQEGLHPDAVSFNTLIYGF 546
Query: 189 VKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+ + AY +F K ++ S ++ F+ LI + A+K EM G D
Sbjct: 547 CRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADS 606
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+Y I+ C+ + + L EM +KG PS+ T V+++L ++++A+ +
Sbjct: 607 YTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHI 666
Query: 308 M 308
M
Sbjct: 667 M 667
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/230 (17%), Positives = 90/230 (39%), Gaps = 27/230 (11%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ ++ ++ D A K M G SPD ++T + +C L
Sbjct: 85 AAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLL 144
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK- 329
+ + +G +V CT+V L ++A +++++M + + ++ ++ L K
Sbjct: 145 RALPHRG---AVAYCTVVC-GLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKR 200
Query: 330 ------------------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
++ YN I C A++L + + PD T+
Sbjct: 201 GDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTY 259
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
++ C K ++ M + +R M+++G +P + T+ + + K S+
Sbjct: 260 NTLIRGLCKKSMPQEAM---HYLRRMMNQGCLPDDFTYNTIIDGYCKISM 306
>gi|414881815|tpg|DAA58946.1| TPA: hypothetical protein ZEAMMB73_360564 [Zea mays]
Length = 792
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 129/310 (41%), Gaps = 36/310 (11%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
Q G TYN ++ L M V E+DE+ ++S + T M +
Sbjct: 493 QNGVSCGDYTYNILINGL-------YMVNRVCEVDEMLKRFLSEGFVPTTM------TYN 539
Query: 183 VLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+++ VK + A+ ++ + K I+ + + I G+C+T D A K + + +
Sbjct: 540 SIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRD 599
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD +Y FI+ +C++ + + + L + + G P V + + K + EA
Sbjct: 600 GIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEA 659
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSK----AVRFLIYNTMISS--------------- 342
K Y M + DT Y++LI SK A +Y+ M+++
Sbjct: 660 SKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHG 719
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C + A +L + P+ T+ + C ++++ L EMLS G+
Sbjct: 720 LCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDGKLQEA---FQLHDEMLSSGV 776
Query: 403 VPQESTHKML 412
VP ++T+ +L
Sbjct: 777 VPDDTTYDIL 786
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 111/258 (43%), Gaps = 33/258 (12%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ------IFDVLIHGWCKTRKSDYAQKAM 235
S ++D LVK + A L+ KD + L++ + +L+HG+C + A
Sbjct: 259 SSVVDVLVKVRRMDEA----LRLKDQMLLATGKKMDVVLATMLMHGYCLNGEVGKALDLF 314
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL-KEMQEKGCKPSVITCTIVMHALEK 294
E+ G +P V+Y I+ C + Y L ++M E+G PS +V+ L +
Sbjct: 315 DEVVSDGVTPTNVTYGVLIKG-CDAEGMTDETYKLCRQMIEQGLLPSTYEFNLVIKGLLR 373
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
K+ +A+ + K+ D + D Y LI L C + A+
Sbjct: 374 DKRWKDAIGLL-KLVVDTGVPDVFTYGCLIHWL----------------CKHQKLHEAVN 416
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
L K++E KP T+ L C K RM + L L EM KG P E T+ L +
Sbjct: 417 LWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEA---LKLYSEMPDKGFPPNEVTYTTLMK 473
Query: 415 E-LEKKSLGNAKERIDEL 431
++KK+ NA ++E+
Sbjct: 474 GYIKKKAFDNAYALLNEM 491
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 106/242 (43%), Gaps = 21/242 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D ++ + L+ T S A A +F ++ K C + ++++DV+I + A +
Sbjct: 149 DAKSRTDLLVTTALGASAADALTLFDEMRGKGCYA-DAKMYDVVIRACVRGGMHCDAVRL 207
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
EM G PD Y I C+ +D + L +M+E G +P +T + V+ L K
Sbjct: 208 FDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVK 267
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
+++ EAL++ ++M + K + ++ ++ C+ E G AL
Sbjct: 268 VRRMDEALRLKDQM---------------LLATGKKMDVVLATMLMHGYCLNGEVGKALD 312
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
L ++ D P T+ +K C + M D L R+M+ +G++P ++ +
Sbjct: 313 LFDEVVSDGVTPTNVTYGVLIK-GCDAEGMTDE--TYKLCRQMIEQGLLPSTYEFNLVIK 369
Query: 415 EL 416
L
Sbjct: 370 GL 371
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 90/212 (42%), Gaps = 22/212 (10%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
L+ G+C+ + D A K EM GF P+ V+YT ++ Y ++K F L EM++ G
Sbjct: 436 LLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNG 495
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------------F 325
T I+++ L ++ E ++ ++ S+ + T Y+S+I F
Sbjct: 496 VSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAF 555
Query: 326 ILSKAVR-------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+ + +R + Y + I C + A+KL + D +PD + +
Sbjct: 556 GMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTF 615
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
C + M + L L +L G+ P + +
Sbjct: 616 CKQGNMSRALHFLVL---LLKDGLTPDVTVYN 644
>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
Length = 698
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 125/296 (42%), Gaps = 53/296 (17%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDE-----------------LSNGYVSLAAM 169
TP+ TY ++++ LGK K+ ++L KE+ L G + A
Sbjct: 326 TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQA-- 383
Query: 170 STVMRRL-------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHG 221
S+V + + D +S ++D L K + A ++F + ++ + ++ LIHG
Sbjct: 384 SSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG 443
Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
CK RK D A + + +M + +PD ++Y I+ C+ D EM E GCKP
Sbjct: 444 LCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPD 503
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMIS 341
V T I++ L KA A V + M S RF +Y++++
Sbjct: 504 VYTYNILISGLCKAGNTDAACGVLDDMSSS--------------------RF-VYSSLVD 542
Query: 342 SACVRSE-EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
C + EG + + E S + +T R + C R+ + + + N +R+
Sbjct: 543 GLCKSGKLEGGCMLFHEM--ERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRK 596
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 114/265 (43%), Gaps = 23/265 (8%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
+D + +++ L K + A + K + + + ++ L++G CK + + A
Sbjct: 257 IDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDL 316
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
++++ +G +PD V+YT I+ +EK + KEM +G + T ++ L +
Sbjct: 317 LRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQ 376
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LI 335
+I +A VY+ M S C+ D S++I LSKA R ++
Sbjct: 377 TGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVV 436
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
Y+ +I C + AL++ ++++ C PD T+ + C ++ +
Sbjct: 437 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFD--- 493
Query: 396 EMLSKGIVPQESTHKMLAEELEKKS 420
EML G P T+ +L L K
Sbjct: 494 EMLEAGCKPDVYTYNILISGLCKAG 518
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/371 (20%), Positives = 148/371 (39%), Gaps = 56/371 (15%)
Query: 100 KRYPSPDKVVEALKCFC---FTW------AKTQTGYMHTPETYNAMVEALGKSKKFGLMW 150
+R S D VV+ +C W + + G+ H+ T NA+++ ++K+
Sbjct: 80 RREISTDAVVKIFQCLKDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAG 139
Query: 151 ELVKE------------IDELSNGYVSLA----AMSTVMRRLD--------TRAMSVLMD 186
L+K + L GY LA V+R ++ + ++++
Sbjct: 140 NLLKNELATIFRPDVETWNVLITGYC-LAREPEEAFAVIREMEEDFGVAPSLKTHNLVLH 198
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
L K V A F + + +S+ F +LI+G K A +E +G + D
Sbjct: 199 GLCKSGKVLAAMDHFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTID 258
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
+YT + + K ++ ++++ GC P++ T +++ L K ++ EA+ +
Sbjct: 259 IHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLR 318
Query: 307 KMKSDDCLTDTSFYSSLIFILSK--------------AVRFLIYNTMISSACVRS--EEG 350
K+ + C D Y+SLI L K A R L +T+ +A +R + G
Sbjct: 319 KIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTG 378
Query: 351 ---NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
A + + + C PD T + + R+ + + + M ++G+ P E
Sbjct: 379 KIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIG---AAVRIFKSMEARGLAPNEV 435
Query: 408 THKMLAEELEK 418
+ L L K
Sbjct: 436 VYSALIHGLCK 446
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 102/238 (42%), Gaps = 28/238 (11%)
Query: 202 LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
F+ + + + DV + +T++ A +K F PD ++ I YC +
Sbjct: 113 FGFQHSVHTGNALLDV----FARTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAR 168
Query: 262 DFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
+ + ++EM+E G PS+ T +V+H L K+ ++ A+ +E ++ ++ +F
Sbjct: 169 EPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPVSAATF- 227
Query: 321 SSLIFILSKAVRFL-------------------IYNTMISSACVRSEEGNALKLRQKIEE 361
S LI L KA + Y +++ + A+ L +KI
Sbjct: 228 SILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITA 287
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
+ C P T+ L C R+++ ++L+R+++ G P T+ L + L K+
Sbjct: 288 NGCTPTIATYNALLNGLCKMGRLEE---AIDLLRKIVDNGCTPDVVTYTSLIDGLGKE 342
>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 666
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 143/347 (41%), Gaps = 54/347 (15%)
Query: 106 DKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG--- 162
D++ EAL F + +TG++ ++ MVE GL +V + L NG
Sbjct: 190 DRISEALALFGYM---VETGFLEAVALFDQMVE-------IGLT-PVVITFNTLINGLCL 238
Query: 163 ---YVSLAAMSTVM----RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQI 214
+ AA+ M +D +++ + K A + K ++ I I
Sbjct: 239 EGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVI 298
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +I CK AQ EM + G +P+ +Y C I+ +C + L++M
Sbjct: 299 YSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMI 358
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
E+ P V+T ++ A K +++EA K+ ++M DT Y+S+I+ K RF
Sbjct: 359 EREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFD 418
Query: 334 ---LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
+++ M S PD T + + C KR+ +GM
Sbjct: 419 DAKHMFDLMAS------------------------PDVVTFNTIIDVYCRAKRVDEGM-- 452
Query: 391 LNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHAT 436
L+RE+ +G+V +T+ L E +L A++ E+++H
Sbjct: 453 -QLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 498
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 96/219 (43%), Gaps = 22/219 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ +I +C+ ++ D + ++E+ + G + +Y I +C + +EM
Sbjct: 435 FNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMI 494
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
G P ITC I+++ + +++ EAL+++E ++ DT Y+ +I + K +
Sbjct: 495 SHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVD 554
Query: 333 -----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
YN MIS C +S +A L K++++ +PD T+ +
Sbjct: 555 EAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLI 614
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ C + + L+ EM S G T KM+A+
Sbjct: 615 RGCLKAGEIDKS---IELISEMRSNGFSGDAFTIKMVAD 650
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 84/222 (37%), Gaps = 34/222 (15%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK------ 261
I L+ F++LI +C K ++ ++ + GF PD V++ + C E
Sbjct: 137 IPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEAL 196
Query: 262 ---------DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
F + +M E G P VIT +++ L ++ EA + KM
Sbjct: 197 ALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKG 256
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
D + Y T+++ C + +AL L K+EE KPD ++
Sbjct: 257 LHIDV----------------VTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYS 300
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ C D L EML KGI P T+ + +
Sbjct: 301 AIIDRLCKDGHHSDAQY---LFSEMLEKGIAPNVFTYNCMID 339
>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
Length = 701
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 143/324 (44%), Gaps = 45/324 (13%)
Query: 132 TYNAMVEALGKSKKFG---LMWELVKE-------------IDEL-SNGYVS-----LAAM 169
+YN +++ L +KK W+L+ E I+ L NGY++ L
Sbjct: 361 SYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEA 420
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKS 228
LDT A S ++ L K+ + A ++ + K + L+S +F+ LI+G+ + K
Sbjct: 421 ENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKL 480
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+ A ++EM +P VSY I C+ + F +LKEM E+G KP +IT +++
Sbjct: 481 EEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLL 540
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA----VRFLIYNTMISSAC 344
+ L + +++ AL ++ + + D ++ +I L A V I+ M C
Sbjct: 541 IDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNC 600
Query: 345 VRS-------EEG--------NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
V EG ALK+ +I E +PD ++ + K C R+ D
Sbjct: 601 VPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDA-- 658
Query: 390 VLNLMREMLSKGIVPQESTHKMLA 413
+ + + L +GI+P T +L
Sbjct: 659 -IEFLYDALDRGILPNAPTWNVLV 681
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/239 (19%), Positives = 103/239 (43%), Gaps = 19/239 (7%)
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
R+ + +++ ++ N A F F+ +S + Q +++LI CK R+ + + +
Sbjct: 115 RSFNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTW 174
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
MF++G +PD +SY I + + EM +G P V+ I++ +
Sbjct: 175 MFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGD 234
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
+A ++++++ LT++S Y S+ YN MI+ C + ++++
Sbjct: 235 FVKANEIWKRL-----LTESSVYPSV----------ETYNIMINGLCKLGKLDESMEMWN 279
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+++++ PD T + + V +EM+ G+ P T+ + L
Sbjct: 280 RMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVF---QEMIESGLSPDVRTYNAMLSGL 335
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/307 (20%), Positives = 134/307 (43%), Gaps = 41/307 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T+++M+ L K+ F ++ +E+ E + +S D R + ++ L +
Sbjct: 292 TFSSMIHGLSKAGNFNAAEKVFQEMIE--------SGLSP-----DVRTYNAMLSGLFRT 338
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ ++++ + +C ++ S +++LI G +K + A + + + G D +
Sbjct: 339 GKLNKCFELWNVMSKNNCCNIVS--YNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTT 396
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y I C+ K L+E + +G + ++H L K + +A+++ +MK
Sbjct: 397 YGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMK 456
Query: 310 SDDCLTDTSFYSSLI------FILSKAVRFL-------------IYNTMISSACVRSEEG 350
+ ++ ++SLI F L +A+ L YNT+I+ C
Sbjct: 457 KNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFS 516
Query: 351 NA-LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
+A L L++ +EE KPD T++ + C +++ + LNL + ++K + P H
Sbjct: 517 DAYLSLKEMLEE-GLKPDMITYSLLIDGLCRGEKVD---MALNLWHQCINKRLKPDLQMH 572
Query: 410 KMLAEEL 416
++ L
Sbjct: 573 NIIIHGL 579
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/286 (19%), Positives = 124/286 (43%), Gaps = 35/286 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
+Y ++ AL KS G + + V+ DE+S V+ D ++L+D +++
Sbjct: 186 SYGTLINALAKS---GNLLDAVELFDEMSVRGVNP----------DVMCYNILIDGFLRK 232
Query: 192 NSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
A +++ + + + S + ++++I+G CK K D + + M ++ SPD +
Sbjct: 233 GDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFT 292
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
++ I + +F + +EM E G P V T ++ L + ++ + +++ M
Sbjct: 293 FSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMS 352
Query: 310 SDDCLTDTSFYSSLI--FILSKAVRFLI-----------------YNTMISSACVRSEEG 350
++C S Y+ LI + +K V I Y +I+ C
Sbjct: 353 KNNCCNIVS-YNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLN 411
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
AL++ ++ E + D ++ + C K ++ + +++ M++
Sbjct: 412 KALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKK 457
>gi|356517946|ref|XP_003527646.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Glycine max]
Length = 511
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 121/313 (38%), Gaps = 59/313 (18%)
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMK 236
T +++L+ L + + A+K+ + L I ++ LIHG C + D A+ ++
Sbjct: 177 TYTVNILIRGLCRVGEIDEAFKLLKDLRSFGCLPDVITYNTLIHGLCLINEVDRARSLLR 236
Query: 237 EMFQHG-FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
E+ +G F+PD VSYT I YC+ + + EM G P+ T ++ K
Sbjct: 237 EVCLNGEFAPDVVSYTMIISGYCKLRKMEEGSLLFDEMINSGTAPNTFTFNALIDGFGKL 296
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI---FILSK----------------AVRFLIY 336
+ AL +Y KM CL D + ++SLI F + + Y
Sbjct: 297 GDMASALALYSKMLVQGCLPDVATFTSLINGHFRVRQVHQAMDMWHKMNEKNIGASLYTY 356
Query: 337 NTMISSACVRS--------------------------------EEGN---ALKLRQKIEE 361
+ ++S C + + GN A K+ ++E
Sbjct: 357 SVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEV 416
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ CKPD T + C K RM + + +ML+ G P E T L L K +
Sbjct: 417 NRCKPDKLTFTILIIGHCMKGRMPEA---IGFFDKMLAVGCAPDEITVNNLRSCLLKAGM 473
Query: 422 GNAKERIDELLTH 434
R+ E+L
Sbjct: 474 PGEAARVKEVLAQ 486
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 96/240 (40%), Gaps = 23/240 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISL--SSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
S+L+ +L + N + H KV + C +++ L+ + + D +++ + ++
Sbjct: 76 SLLLRSLCRSN-LHHTAKVVYDWMRCDGQIPDNRLLGFLVSSYAIVGRLDVSRELLADVQ 134
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ + V Y R+ +E+ KP T I++ L + +I
Sbjct: 135 CNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILIRGLCRVGEID 194
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK-LRQK 358
EA K+ + ++S CL D + YNT+I C+ +E A LR+
Sbjct: 195 EAFKLLKDLRSFGCLPDV----------------ITYNTLIHGLCLINEVDRARSLLREV 238
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
PD ++ + C ++M++G L L EM++ G P T L + K
Sbjct: 239 CLNGEFAPDVVSYTMIISGYCKLRKMEEGSL---LFDEMINSGTAPNTFTFNALIDGFGK 295
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 3/139 (2%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ--IFDVLIHGWCKTRKSDYAQKAMKEMF 239
SVL+ L N + H + L+ + + Q I++ +I G+CK+ D A K + EM
Sbjct: 357 SVLVSGLCNNNRL-HKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEME 415
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ PD +++T I +C + + +M GC P IT + L KA
Sbjct: 416 VNRCKPDKLTFTILIIGHCMKGRMPEAIGFFDKMLAVGCAPDEITVNNLRSCLLKAGMPG 475
Query: 300 EALKVYEKMKSDDCLTDTS 318
EA +V E + + L TS
Sbjct: 476 EAARVKEVLAQNLTLGTTS 494
>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
[Acantholippia salsoloides]
Length = 410
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 129/317 (40%), Gaps = 50/317 (15%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRL----DTRAMSVLM 185
+T ++E L K K F L+W KEI L GY SL + +M R + R +
Sbjct: 94 DTCKKVLEHLMKLKYFKLVWGFYKEI--LECGYPASLYFFNILMHRFCKEGEIRVARSVF 151
Query: 186 DTLVK---RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
D + K R SV F+ L++G+ + D + M G
Sbjct: 152 DAITKWGLRPSVVS------------------FNTLMNGYIRLGDLDEGFRLKSAMHASG 193
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
PD +Y+ I C+E + EM +KG P+ +T T ++ K ++ A+
Sbjct: 194 VEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAM 253
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSA 343
++Y++M S D Y++LI+ L K + Y T+I
Sbjct: 254 EIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGC 313
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C + A + R+++ +++ + D + + C + R D ++REMLS G+
Sbjct: 314 CKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAE---KMLREMLSVGLK 370
Query: 404 PQESTHKMLAEELEKKS 420
P T+ M+ E KK
Sbjct: 371 PDTGTYTMIINEFCKKG 387
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 115/275 (41%), Gaps = 31/275 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L + R D SVL++ L K + +
Sbjct: 156 KWGLRPSVV-SFNTLMNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKI 214
Query: 195 AHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A ++F + D + + F LI G CK + D A + K+M S D ++Y
Sbjct: 215 DGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTL 274
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I C++ D ++ + EM+ KG KP IT T ++ K + A + ++M ++
Sbjct: 275 IYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENI 334
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
D ++Y T+IS C +A K+ +++ KPD T+
Sbjct: 335 RLDD----------------VVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTM 378
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+ C K + G L++EM G VP T
Sbjct: 379 IINEFCKKGDVWTGS---KLLKEMQRDGHVPSVVT 410
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 93/234 (39%), Gaps = 22/234 (9%)
Query: 184 LMDTLVKRNSVAHAYKVF---LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L+ +V R A VF L+ K + +F LI + ++ A + + +
Sbjct: 27 LIQVVVSRKGKGSASAVFAAILETKGTLRSDIYVFSGLITAYLESGFLRDAIECYRLTRE 86
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
H F + +EH + K F+ V KE+ E G S+ I+MH K +I
Sbjct: 87 HKFWVPFDTCKKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRV 146
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A V+ D +T S++ +NT+++ + +L+ +
Sbjct: 147 ARSVF------DAITKWGLRPSVV----------SFNTLMNGYIRLGDLDEGFRLKSAMH 190
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+PD T++ + C + ++ DG L EML KG+VP T L +
Sbjct: 191 ASGVEPDVYTYSVLINGLCKESKI-DG--ANELFDEMLDKGLVPNGVTFTTLID 241
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 133/316 (42%), Gaps = 48/316 (15%)
Query: 132 TYNAMVEALGKSKKF----GLMWELVKE-IDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
T+NA+++A K KF L +++K ID Y SL + RLD
Sbjct: 257 TFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDK-------- 308
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
A F+ KDC ++ LI G+CK+++ + + +EM G D
Sbjct: 309 --------AKQMFEFMVSKDCFP-DLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 359
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+YT I+ + D K+M G P ++T +I++ L ++ +AL+V++
Sbjct: 360 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD 419
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRS 347
M+ + D Y+++I + KA + + YNTMIS C +
Sbjct: 420 YMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKR 479
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG--MLVLNLMREMLSKGIVPQ 405
A L +K++ED PD T+ + + ++DG L+REM S V
Sbjct: 480 LLQEAYALLKKMKEDGPLPDSGTYNTLI-----RAHLRDGDKAASAELIREMRSCRFVGD 534
Query: 406 ESTHKMLAEELEKKSL 421
ST ++A L L
Sbjct: 535 ASTIGLVANMLHDGRL 550
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 101/236 (42%), Gaps = 20/236 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
V+++ L KR + A+ + K + I IF+ +I CK R D A KEM
Sbjct: 154 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 213
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ V+Y+ I C + L +M EK P+++T ++ A K + E
Sbjct: 214 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 273
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A K+++ M D YN++I+ C+ A ++ + +
Sbjct: 274 AEKLHDDMIKRSIDPD----------------IFTYNSLINGFCMHDRLDKAKQMFEFMV 317
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C PD +T+ +K C KR++DG L REM +G+V T+ L + L
Sbjct: 318 SKDCFPDLDTYNTLIKGFCKSKRVEDGT---ELFREMSHRGLVGDTVTYTTLIQGL 370
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 108/254 (42%), Gaps = 23/254 (9%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS + +++LI+ +C+ + A + +M + G+ P V+ + + YC K
Sbjct: 41 ISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAV 100
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ +M E G +P IT T ++H L + EA+ + ++M C + Y ++ L
Sbjct: 101 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 160
Query: 328 SK------AVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
K A L I+NT+I S C +AL L +++E +P+
Sbjct: 161 CKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 220
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
T++ + C R D L+ +M+ K I P T L + K+ E++
Sbjct: 221 VTYSSLISCLCSYGRWSDAS---QLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKL 277
Query: 429 -DELLTHATEQRTF 441
D+++ + + F
Sbjct: 278 HDDMIKRSIDPDIF 291
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 22/217 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ L+ K +K D ++M + G S + +Y I +CR L +M
Sbjct: 13 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM 72
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---FILSKAV 331
+ G +PS++T + +++ K+I +A+ + ++M DT +++LI F+ +KA
Sbjct: 73 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 132
Query: 332 ----------------RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ Y +++ C R + A L K+E + D +
Sbjct: 133 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTII 192
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C + + D LNL +EM +KGI P T+ L
Sbjct: 193 DSLCKYRHVDDA---LNLFKEMETKGIRPNVVTYSSL 226
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 20/198 (10%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+TYN +++ KSK+ EL +E+ G V DT + L+ L
Sbjct: 326 DTYNTLIKGFCKSKRVEDGTELFREMSH--RGLVG-----------DTVTYTTLIQGLFH 372
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+A KVF + D + + +L+ G C K + A + M + D
Sbjct: 373 DGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYI 432
Query: 250 YTCFIEHYCREKDFRKVDYT---LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
YT IE C+ KVD + KG KP+V+T ++ L + + EA + +
Sbjct: 433 YTTMIEGMCKAG---KVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLK 489
Query: 307 KMKSDDCLTDTSFYSSLI 324
KMK D L D+ Y++LI
Sbjct: 490 KMKEDGPLPDSGTYNTLI 507
>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
Length = 822
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 134/327 (40%), Gaps = 44/327 (13%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL--DTRAMS 182
G++ T TY +++ LGK + L E+ + R L + + +
Sbjct: 269 GFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRK---------------RGLSPNVQIYN 313
Query: 183 VLMDTLVKRNSVAHAYKVFLK--FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++D L K S A V LK F F+ LI G C A+ ++E +
Sbjct: 314 SVIDALCKCWSATQAM-VILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIR 372
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
+P+ +SYT I +C + L EM +G P V+T ++H L A ++ E
Sbjct: 373 RELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSE 432
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI------FILSKAVRFL-------------IYNTMIS 341
AL V EKM D + Y+ LI +L A L +Y T+I
Sbjct: 433 ALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLID 492
Query: 342 SACVRSEE-GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+RSE G+A K+ + +E +PD + +K C M + +L ++ MR++
Sbjct: 493 GF-IRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKV--- 548
Query: 401 GIVPQESTHKMLAEELEKKSLGNAKER 427
G +P E T+ + K+ N R
Sbjct: 549 GCIPDEFTYTTVISGYAKQGNLNGALR 575
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/370 (21%), Positives = 152/370 (41%), Gaps = 39/370 (10%)
Query: 67 VESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGY 126
VE + ++ ++ L ED D + + +L + +V E LK W G
Sbjct: 180 VEQRRWDDARKLYDEMLGEDSGAD-NYSTCVLVRGLCLEGRVEEGLKLIEARWG---AGC 235
Query: 127 MHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
+ YN +++ + G L+ E++ + G+ L + T L++
Sbjct: 236 IPHVVFYNVLIDGYCRRGDMGRGLLLLGEME--AKGF--LPTLVT---------YGSLIN 282
Query: 187 TLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L K+ + +FL+ K +S + QI++ +I CK + A +K+MF G P
Sbjct: 283 CLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDP 342
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D +++ I C E RK ++ L+E + P+ ++ T ++H ++ A +
Sbjct: 343 DIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLL 402
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
+M D + +LI L V + AL +R+K+ E
Sbjct: 403 MEMMGRGHTPDVVTFGALIHGL----------------VVAGKVSEALIVREKMTERQVF 446
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE-LEKKSLGNA 424
PD + + C K + N++ EML K + P E + L + + ++LG+A
Sbjct: 447 PDVNIYNVLISGLCKKHMLPAAK---NILEEMLEKNVQPDEFVYATLIDGFIRSENLGDA 503
Query: 425 KERIDELLTH 434
+ +I E + H
Sbjct: 504 R-KIFEFMEH 512
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 95/244 (38%), Gaps = 20/244 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D L+ LV V+ A V K + + I++VLI G CK A+ +
Sbjct: 413 DVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNIL 472
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM + PD Y I+ + R ++ + M+ KG +P +++C ++ +
Sbjct: 473 EEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQF 532
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ EA+ M+ C+ D Y T+IS + AL+
Sbjct: 533 GMMSEAILCMSNMRKVGCIPDE----------------FTYTTVISGYAKQGNLNGALRW 576
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ + CKP+ T++ + C + D L M ++ + P T+ +L
Sbjct: 577 LCDMIKRKCKPNVVTYSSLINGYC---KTGDTDSAEGLFANMQAEALSPNVVTYTILIGS 633
Query: 416 LEKK 419
L KK
Sbjct: 634 LFKK 637
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 112/261 (42%), Gaps = 27/261 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF--DVLIHGWCKTRKSDYAQKA 234
D + L+D ++ ++ A K+F +F + + I + +I G+C+ A
Sbjct: 483 DEFVYATLIDGFIRSENLGDARKIF-EFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILC 541
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
M M + G PD +YT I Y ++ + L +M ++ CKP+V+T + +++ K
Sbjct: 542 MSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCK 601
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLI---FILSKAVRF-LIYNTMISSACVRSEEG 350
A ++ M+++ + Y+ LI F K +R L + TM+ + C
Sbjct: 602 TGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHC----SP 657
Query: 351 NALKLRQKIEE-DSCKPDCETHARSLKMCCHKKRM--KDGMLV--------LNLMREMLS 399
N + L + SC P C ++ +CC+ + KD +LV + R
Sbjct: 658 NDVTLHYLVNGLTSCTP-CVINS----ICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAY 712
Query: 400 KGIVPQESTHKMLAEELEKKS 420
I+ H ML E L+ K+
Sbjct: 713 NAIIFSLCRHNMLREALDFKN 733
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 83/194 (42%), Gaps = 4/194 (2%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +I G+ K + A + + +M + P+ V+Y+ I YC+ D + MQ
Sbjct: 557 YTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQ 616
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ P+V+T TI++ +L K ++ A +E M + C + L+ L+ +
Sbjct: 617 AEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCV 676
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
I + +++ V ++ L + +K+ D P + + C +++ L+
Sbjct: 677 INSICCNTSEVHGKDA-LLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREA---LDFK 732
Query: 395 REMLSKGIVPQEST 408
M KG VP T
Sbjct: 733 NRMAKKGYVPNPIT 746
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 76/193 (39%), Gaps = 20/193 (10%)
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTI 287
D ++ M G +P + Y K + ++E+ G P V C
Sbjct: 115 DAVDDTLQSMSLAGAAPTRACLGALVAAYADAGMLGKATDMCERLREQYGSLPEVTHCNR 174
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRS 347
++ L + ++ +A K+Y++M +D D YS+ + VR L R
Sbjct: 175 LLKLLVEQRRWDDARKLYDEMLGEDSGADN--YSTCVL-----VRGLCLEG-------RV 220
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
EEG LKL + C P + + C + M G+L+L EM +KG +P
Sbjct: 221 EEG--LKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLG---EMEAKGFLPTLV 275
Query: 408 THKMLAEELEKKS 420
T+ L L KK
Sbjct: 276 TYGSLINCLGKKG 288
>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
aristata]
Length = 431
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 119/280 (42%), Gaps = 33/280 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L + R + D SVL++ L K + +
Sbjct: 170 KWGLRPSVV-SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 228
Query: 195 AHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
A ++F + K + + F LI G CK + D A + K+M SPD ++Y
Sbjct: 229 DDANELFDEMLVKGLVP-NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 287
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I C++ D ++ + + EM KG KP IT T ++ K + A + ++M ++
Sbjct: 288 LIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQEN 347
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
D Y++L IS C +A K+ +++ KPD T+
Sbjct: 348 IRLDEVAYTAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPDARTYT 391
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C K + G L++EM G VP T+ +L
Sbjct: 392 MIINEFCKKGDVWKGX---KLLKEMQRDGHVPSVVTYNVL 428
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 106/261 (40%), Gaps = 51/261 (19%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
S F++L+H +CK AQ + + G P VSY + Y R D +
Sbjct: 141 SLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 200
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------ 324
M G +P V T +++++ L K ++ +A +++++M + + +++LI
Sbjct: 201 SAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKN 260
Query: 325 -----------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+LS+++ + YNT+I C + + A L ++ KPD T+
Sbjct: 261 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITY 320
Query: 372 ARSLKMCC----------HKKRMKDGMLVLN----------------------LMREMLS 399
+ CC H+KRM + L+ ++REMLS
Sbjct: 321 TTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLS 380
Query: 400 KGIVPQESTHKMLAEELEKKS 420
G+ P T+ M+ E KK
Sbjct: 381 VGLKPDARTYTMIINEFCKKG 401
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 14/161 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K L+ E MS + D + L+D K
Sbjct: 284 TYNTLIYGLCKKGDLKQAHHLIDE-------------MSVKGLKPDKITYTTLIDGCCKE 330
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A++ + ++ I L + LI G C+ +S A+K ++EM G PD +Y
Sbjct: 331 GDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTY 390
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
T I +C++ D K LKEMQ G PSV+T ++M+
Sbjct: 391 TMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLMNG 431
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G CK D A + K M Q D V+YT I C+E + L+EM
Sbjct: 320 YTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREML 379
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G KP T T++++ K +++ K+ ++M+ D + Y+ L+
Sbjct: 380 SVGLKPDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLM 429
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 80/198 (40%), Gaps = 22/198 (11%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+E+ + G+ + + +C++ D R + + G +PSV++ +M+ +
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA--------------VRFLI-----Y 336
+ E ++ M + D YS LI L K V+ L+ +
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTF 250
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
T+I C A+++ +++ S PD T+ + C K +K +L+ E
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH---HLIDE 307
Query: 397 MLSKGIVPQESTHKMLAE 414
M KG+ P + T+ L +
Sbjct: 308 MSVKGLKPDKITYTTLID 325
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 19/161 (11%)
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
+EH + K F+ V +E+ E G S+ I+MH K I A V+ D
Sbjct: 114 LEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVF------DA 167
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
+T S++ YNT+++ + +L+ + +PD T++
Sbjct: 168 ITKWGLRPSVV----------SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSV 217
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ C + +M D L EML KG+VP T L +
Sbjct: 218 LINGLCKESKMDDAN---ELFDEMLVKGLVPNGVTFTTLID 255
>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 81/388 (20%), Positives = 144/388 (37%), Gaps = 80/388 (20%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE-----------LSNGYVS 165
F WA Q GY H+ Y +++ LG + F ++ L+ ++ E L Y
Sbjct: 91 FKWAGAQKGYCHSFSVYYLLIDKLGAAAGFKVIDRLLLQMKEEGIVFRESLFILIMKYYG 150
Query: 166 LAAMSTVMRRL------------DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSS 212
A + RL R+ +V++D LV N + A VF +S +
Sbjct: 151 RAGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPND 210
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
F +++ C + D A +++M +HG P+ + Y I+ + + L+E
Sbjct: 211 YTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEE 270
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M GC P V T V++ + ++ E K+ ++M + Y L+ L K R
Sbjct: 271 MFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCR 330
Query: 333 F---------------------------------------------------LIYNTMIS 341
++T+++
Sbjct: 331 IDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVN 390
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C + G+AL+L ++ CKP+ T+ + C K ++++ L+L REML+KG
Sbjct: 391 GLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLIL---REMLTKG 447
Query: 402 IVPQESTHKMLAEELEKKSLGNAKERID 429
+ L L K G E +D
Sbjct: 448 FSLNTVGYNALISALCKH--GKIHEALD 473
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 95/217 (43%), Gaps = 22/217 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F L++G CK A + + +M G P+ +YT I+ +C++ + L+EM
Sbjct: 385 FSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREML 444
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA---- 330
KG + + ++ AL K +I+EAL ++ +M S C D ++SLIF L +
Sbjct: 445 TKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEME 504
Query: 331 ---------------VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ +NT+I + R E ALKL + C D T+ +
Sbjct: 505 DALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLI 564
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
K C ++ G L L EM+ KG+ P T +L
Sbjct: 565 KALCKTGAVEKG---LGLFEEMIRKGLTPSIITCNIL 598
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 79/363 (21%), Positives = 135/363 (37%), Gaps = 78/363 (21%)
Query: 117 FTWAK-TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGY 163
F + K GY+ T++ +V L K FG ELV ++D L +G+
Sbjct: 368 FVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGF 427
Query: 164 V---SLAAMSTVMRRLDTRAMSV-------LMDTLVKRNSVAHAYKVF------------ 201
L ++R + T+ S+ L+ L K + A +F
Sbjct: 428 CKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDI 487
Query: 202 -----LKFKDC-------------------ISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
L F C + +S F+ LIH + + + A K + +
Sbjct: 488 FTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVND 547
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M G D ++Y I+ C+ K +EM KG PS+ITC I+++ A +
Sbjct: 548 MLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGK 607
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
++ AL+ M F ++ YN++I+ C R AL L +
Sbjct: 608 VHNALEFMRDM------IHRGFSPDIV----------TYNSLINGLCKRGRIQEALNLFE 651
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
K++ + +PD T+ + C + D L+ + G VP + T +L
Sbjct: 652 KLQAEGIQPDSITYNTLICWLCREGAFDDACF---LLYRGVENGFVPNDVTWNILVYNFG 708
Query: 418 KKS 420
K+S
Sbjct: 709 KQS 711
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 99/220 (45%), Gaps = 21/220 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKE-MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F+ L++G+ + + + A + + M +G+ PD +++ + C++ F + +M
Sbjct: 349 FNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDM 408
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
KGCKP++ T TI++ K Q+ EA + +M + +T
Sbjct: 409 DAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNT---------------- 452
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ YN +IS+ C + AL + ++ CKPD T + C M+D L L
Sbjct: 453 VGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMED---ALAL 509
Query: 394 MREMLSKGIVPQESTHKMLAEE-LEKKSLGNAKERIDELL 432
R+M+ +G++ T L L + + A + ++++L
Sbjct: 510 YRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDML 549
>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Cucumis sativus]
Length = 749
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 155/353 (43%), Gaps = 47/353 (13%)
Query: 125 GYMHTPETYNAMVEALGKSKKF-----GLMWELVKE--------IDELSNGYVSLAAMST 171
G+M +YNA+++A+ ++K+ G+ E+V+ + L G+ + +
Sbjct: 162 GFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEM 221
Query: 172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIH 220
+ + + +V N++ AY K + L + ++V+I+
Sbjct: 222 GLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVIN 281
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G C+ + + ++EM + + PD V++ I YC +F + EM + G P
Sbjct: 282 GLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSP 341
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILSKAVR-- 332
+V+T T +++++ KA + A++ ++M+ + Y++LI L +A +
Sbjct: 342 NVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIM 401
Query: 333 -----------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
+ YN +I+ C+ +A L Q++ E PD +++ + C
Sbjct: 402 KEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRN 461
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLT 433
+ ++ L EM++KGI P +T+ L + L +++ LG + E+L+
Sbjct: 462 QELEKA---FQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLS 511
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 148/350 (42%), Gaps = 47/350 (13%)
Query: 88 ETDVDKVSEILR---KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSK 144
E + + SEIL KR PD+V T+ GY + + A+V +
Sbjct: 286 EGQMKETSEILEEMSKRRYVPDRV---------TFNTLINGYCNVGNFHQALVLH-AEMV 335
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD----------TRAMSVLMDTLVKRNSV 194
K GL +V L N ++ M LD R + L+D ++ +
Sbjct: 336 KNGLSPNVVT-YTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFL 394
Query: 195 AHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
AY++ + ++ + + ++ LI+G C + + A ++EM + GF PD VSY+
Sbjct: 395 KQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTI 454
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I +CR ++ K EM KG P V T + ++ L K +++ E ++++M S
Sbjct: 455 ISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGL 514
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
D Y+SL I++ C+ + AL+L ++ + PD T+
Sbjct: 515 PPDEVTYTSL----------------INAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNV 558
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE---ELEKKS 420
+ + R K+ L+ ++L + VP E T+ L + LE KS
Sbjct: 559 LINGFNKQSRTKEAK---RLLLKLLYEESVPNEITYNTLIDNCNNLEFKS 605
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 75/358 (20%), Positives = 147/358 (41%), Gaps = 69/358 (19%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVK--EIDELSNGYVSL-AAMSTVM 173
F + G + TYN +++A K +K G ++L++ + L+ +S ++ +
Sbjct: 225 FFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLC 284
Query: 174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQK 233
R + S +++ + KR V D ++ F+ LI+G+C A
Sbjct: 285 REGQMKETSEILEEMSKRRYVP----------DRVT-----FNTLINGYCNVGNFHQALV 329
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
EM ++G SP+ V+YT I C+ + + L +M+++G P+ T T ++
Sbjct: 330 LHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFS 389
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAV-RFLI---- 335
+ + +A ++ ++M + Y++LI +L + + R I
Sbjct: 390 QQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVV 449
Query: 336 -YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD------GM 388
Y+T+IS C E A +L+ ++ PD T++ ++ C ++R+ + M
Sbjct: 450 SYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEM 509
Query: 389 LVLNL-----------------------MR---EMLSKGIVPQESTHKMLAEELEKKS 420
L L L +R EM+ KG P T+ +L K+S
Sbjct: 510 LSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQS 567
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 20/203 (9%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV-DYT 269
SS +FD+++ + + A + +GF P +SY ++ R K K+ +
Sbjct: 131 SSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGI 190
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
KEM E G P+V T I++ A + L + +M+ + CL +
Sbjct: 191 FKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNV------------ 238
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ YNT+I + C + G A KL + + P+ ++ + C + +MK+
Sbjct: 239 ----VTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKE--- 291
Query: 390 VLNLMREMLSKGIVPQESTHKML 412
++ EM + VP T L
Sbjct: 292 TSEILEEMSKRRYVPDRVTFNTL 314
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 60/302 (19%), Positives = 129/302 (42%), Gaps = 64/302 (21%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI-------DELSNGYVSLAAMSTVMRRLDTRAMSVL 184
TY+++++ L K ++ G + +L +E+ DE++ Y SL + LD +A+ L
Sbjct: 485 TYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVT--YTSLINAYCIEGDLD-KALR-L 540
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
D ++++ S ++VLI+G+ K ++ A++ + ++
Sbjct: 541 HDEMIQKG---------------FSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESV 585
Query: 245 PDGVSYTCFIEH---------------YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
P+ ++Y I++ +C + + D L+ M +KG K + +++
Sbjct: 586 PNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVII 645
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE 349
H K I +A +Y++M + + +S I L+K++ E
Sbjct: 646 HGHSKVGNIEKAYNLYKEMLH----SGFAPHSVTIMALAKSLY---------------HE 686
Query: 350 GNALKLRQKIEED--SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
G ++L Q ++ SC+ A+ L K+ D V N++++M G++P S
Sbjct: 687 GKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMDA--VFNVLKDMALSGLLPYSS 744
Query: 408 TH 409
+
Sbjct: 745 AN 746
>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
Length = 558
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 133/316 (42%), Gaps = 48/316 (15%)
Query: 132 TYNAMVEALGKSKKF----GLMWELVKE-IDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
T+NA+++A K KF L +++K ID Y SL + RLD
Sbjct: 256 TFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDK-------- 307
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
A F+ KDC ++ LI G+CK+++ + + +EM G D
Sbjct: 308 --------AKQMFEFMVSKDCFP-DLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 358
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+YT I+ + D K+M G P ++T +I++ L ++ +AL+V++
Sbjct: 359 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD 418
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRS 347
M+ + D Y+++I + KA + + YNTMIS C +
Sbjct: 419 YMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKR 478
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG--MLVLNLMREMLSKGIVPQ 405
A L +K++ED PD T+ + + ++DG L+REM S V
Sbjct: 479 LLQEAYALLKKMKEDGPLPDSGTYNTLI-----RAHLRDGDKAASAELIREMRSCRFVGD 533
Query: 406 ESTHKMLAEELEKKSL 421
ST ++A L L
Sbjct: 534 ASTIGLVANMLHDGRL 549
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 101/236 (42%), Gaps = 20/236 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
V+++ L KR + A+ + K + I IF+ +I CK R D A KEM
Sbjct: 153 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 212
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ V+Y+ I C + L +M EK P+++T ++ A K + E
Sbjct: 213 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 272
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A K+++ M D YN++I+ C+ A ++ + +
Sbjct: 273 AEKLHDDMIKRSIDPD----------------IFTYNSLINGFCMHDRLDKAKQMFEFMV 316
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C PD +T+ +K C KR++DG L REM +G+V T+ L + L
Sbjct: 317 SKDCFPDLDTYNTLIKGFCKSKRVEDGT---ELFREMSHRGLVGDTVTYTTLIQGL 369
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 14/195 (7%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+TYN +++ KSK+ EL +E+ G V DT + L+ L
Sbjct: 325 DTYNTLIKGFCKSKRVEDGTELFREMSH--RGLVG-----------DTVTYTTLIQGLFH 371
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+A KVF + D + + +L+ G C K + A + M + D
Sbjct: 372 DGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYI 431
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
YT IE C+ + KG KP+V+T ++ L + + EA + +KMK
Sbjct: 432 YTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 491
Query: 310 SDDCLTDTSFYSSLI 324
D L D+ Y++LI
Sbjct: 492 EDGPLPDSGTYNTLI 506
>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
Length = 792
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 129/310 (41%), Gaps = 36/310 (11%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
Q G TYN ++ L M V E+DE+ ++S + T M +
Sbjct: 493 QNGVSCGDYTYNILINGL-------YMVNRVCEVDEMLKRFLSEGFVPTTM------TYN 539
Query: 183 VLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+++ VK + A+ ++ + K I+ + + I G+C+T D A K + + +
Sbjct: 540 SIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRD 599
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD +Y FI+ +C++ + + + L + + G P V + + K + EA
Sbjct: 600 GIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEA 659
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSK----AVRFLIYNTMISS--------------- 342
K Y M + DT Y++LI SK A +Y+ M+++
Sbjct: 660 SKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHG 719
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C + A +L + P+ T+ + C ++++ L EMLS G+
Sbjct: 720 LCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDGKLQEA---FQLHDEMLSSGV 776
Query: 403 VPQESTHKML 412
VP ++T+ +L
Sbjct: 777 VPDDTTYDIL 786
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 90/212 (42%), Gaps = 22/212 (10%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
L+ G+C+ + D A K EM GF P+ V+YT ++ Y ++K F L EM++ G
Sbjct: 436 LLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNG 495
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------------F 325
T I+++ L ++ E ++ ++ S+ + T Y+S+I F
Sbjct: 496 VSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAF 555
Query: 326 ILSKAVR-------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+ + +R + Y + I C + A+KL + D +PD + +
Sbjct: 556 GMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTF 615
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
C + M + L L +L G+ P + +
Sbjct: 616 CKQGNMSRALHFLVL---LLKDGLTPDVTVYN 644
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 101/229 (44%), Gaps = 21/229 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D ++ + L+ T + S A A +F ++ K C + ++++DV+I + A +
Sbjct: 149 DAKSRTDLLVTTARGASAADALTLFDEMRGKGCYA-DAKMYDVVIRACVRGGMHCDAVRL 207
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
EM G PD Y I C+ +D + L +M+E G +P +T + V+ L K
Sbjct: 208 FDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVK 267
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
++ EAL++ ++M + K + ++ ++ C+ E G AL
Sbjct: 268 VGRMDEALRLKDQM---------------LLATGKKMDVVLATMLMHGYCLHGEVGKALD 312
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
L ++ D P T+ +K C + M D L R+M+ +G++
Sbjct: 313 LFDEVVSDGVTPTNVTYGVLIK-GCDAEGMSDE--TYKLCRQMIEQGLL 358
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 110/258 (42%), Gaps = 33/258 (12%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ------IFDVLIHGWCKTRKSDYAQKAM 235
S ++D LVK + A L+ KD + L++ + +L+HG+C + A
Sbjct: 259 SSVVDVLVKVGRMDEA----LRLKDQMLLATGKKMDVVLATMLMHGYCLHGEVGKALDLF 314
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL-KEMQEKGCKPSVITCTIVMHALEK 294
E+ G +P V+Y I+ C + Y L ++M E+G S +V+ L +
Sbjct: 315 DEVVSDGVTPTNVTYGVLIKG-CDAEGMSDETYKLCRQMIEQGLLLSTYEFNLVIKGLLR 373
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
K+ +A+ + E + D + D Y LI L C + A+
Sbjct: 374 DKRWKDAIGLLE-LVVDTGVPDVFTYGCLIHWL----------------CKHQKLHEAVN 416
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
L K++E KP T+ L C K RM + L L EM KG P E T+ L +
Sbjct: 417 LWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEA---LKLYSEMPDKGFPPNEVTYTTLMK 473
Query: 415 E-LEKKSLGNAKERIDEL 431
++KK+ NA ++E+
Sbjct: 474 GYIKKKAFDNAYALLNEM 491
>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
micromera]
Length = 431
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 125/317 (39%), Gaps = 50/317 (15%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRL----DTRAMSVLM 185
+T ++E L K K F L+W KEI L GY SL + +M R D R +
Sbjct: 108 DTCRKVLEHLMKLKYFKLVWGFYKEI--LECGYPXSLYFFNILMHRFCKDGDIRVAXSVF 165
Query: 186 DTLVK---RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
D + K R SV ++ L++G+ + D + M G
Sbjct: 166 DAITKWGLRPSVVS------------------YNTLMNGYIRLGDLDEGFRLKSAMXASG 207
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
PD +Y+ I C+E + EM KG P+ +T T ++ K ++ A+
Sbjct: 208 VQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAM 267
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSA 343
++Y++M S L D Y+ LI+ L K + Y T+I
Sbjct: 268 EIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGC 327
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C A + R ++ E++ + D + + C + R D ++R MLS G+
Sbjct: 328 CKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAE---KMLRXMLSVGLK 384
Query: 404 PQESTHKMLAEELEKKS 420
P T+ M+ E KK
Sbjct: 385 PDAXTYTMIINEFCKKG 401
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 115/280 (41%), Gaps = 33/280 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L AM + D SVL++ L K +
Sbjct: 170 KWGLRPSVV-SYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKM 228
Query: 195 AHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
A ++F + K + + F LI G CK + D A + K+M PD ++Y
Sbjct: 229 DDANELFDEMLVKGLVP-NXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNX 287
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I C++ D ++ + + EM KG KP IT T ++ K + A + +M ++
Sbjct: 288 LIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEEN 347
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
D Y++L IS C +A K+ + + KPD T+
Sbjct: 348 IRLDDVAYTAL----------------ISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYT 391
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C K + G L++EM G VP T+ +L
Sbjct: 392 MIINEFCKKGDVWKGS---KLLKEMQRDGHVPSVVTYNVL 428
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 14/161 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K +L+ E MS + D + L+D K
Sbjct: 284 TYNXLIYGLCKKGDLKQANDLIXE-------------MSMKGLKPDKITYTTLIDGCCKE 330
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
++ A++ + ++ I L + LI G C+ + A+K ++ M G PD +Y
Sbjct: 331 GNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTY 390
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
T I +C++ D K LKEMQ G PSV+T ++M+
Sbjct: 391 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G CK B A + M + D V+YT I C+E + L+ M
Sbjct: 320 YTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXML 379
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G KP T T++++ K +++ K+ ++M+ D + Y+ L+
Sbjct: 380 SVGLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 418
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 91/388 (23%), Positives = 155/388 (39%), Gaps = 60/388 (15%)
Query: 51 TQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVE 110
TQ D + +++ES L + I + L+++H+ R + + KV+E
Sbjct: 61 TQRSDIYVFSGLITAYLESGFLRDA--IECYRLTKEHK---------FRVPFDTCRKVLE 109
Query: 111 ---ALKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM---------WEL-- 152
LK F W + GY + +N ++ + K + L W L
Sbjct: 110 HLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRP 169
Query: 153 -VKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVF 201
V + L NGY+ L ++ R + D SVL++ L K + + A ++F
Sbjct: 170 SVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELF 229
Query: 202 LKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
+ D + + + F LI G CK + D A + K+M SPD ++Y I C+
Sbjct: 230 DEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKN 289
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
D ++ + EM KG KP IT T ++ K + A + ++M ++ D Y
Sbjct: 290 GDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
++L IS C +A K+ +++ KP+ T+ + C
Sbjct: 350 TAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQEST 408
K + G LM+EM G VP T
Sbjct: 394 KGDVWTGS---KLMKEMQRDGYVPSVVT 418
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 111/254 (43%), Gaps = 34/254 (13%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS-----QIFDVLIHGWCKTRKSD 229
R + + LM+ +K + +++ K+ + S + VLI+G CK K D
Sbjct: 168 RPSVVSFNTLMNGYIKLGDLNEGFRL----KNAMQASGVQPDVYTYSVLINGLCKESKLD 223
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL---KEMQEKGCKPSVITCT 286
A + EM +G P+ VS+T I+ +C++ +VD + K+M + P +IT
Sbjct: 224 DANELFDEMLDNGLVPNSVSFTTLIDGHCKDG---RVDLAMEIYKQMLSQSLSPDLITYN 280
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR 346
+++ L K + +A + +M D + Y T+I +C
Sbjct: 281 TLIYGLCKNGDLKQAQDLINEMSMKGLKPDK----------------ITYTTLIDGSCKE 324
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
+ A + R+++ +++ + D + + C + R D ++REMLS G+ P+
Sbjct: 325 GDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLKPEI 381
Query: 407 STHKMLAEELEKKS 420
T+ M+ E KK
Sbjct: 382 GTYTMIINEFCKKG 395
>gi|414865543|tpg|DAA44100.1| TPA: hypothetical protein ZEAMMB73_135273 [Zea mays]
Length = 542
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 113/259 (43%), Gaps = 27/259 (10%)
Query: 152 LVKEIDELSNGYVS---LAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF---LKFK 205
L+K ID S+ V A M+ + D + L+ L + A+ V L+
Sbjct: 120 LLKSIDAASSESVYRAFFATMAAMECAPDAATYNCLIWILCDSQRLDEAWGVLDSMLEVG 179
Query: 206 DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
C ++ S + ++HG+CK + A++ + M Q G +PD +SY+ I+ CR +F K
Sbjct: 180 VCPTVRS--YTAILHGYCKQGRVLEAERLLDTMIQVGCAPDVISYSVLIQGLCRVGEFGK 237
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD-------------D 312
V+ L E + KG P+ +T I M AL + + EA + + M S D
Sbjct: 238 VERILGESEAKGWTPNAVTYNIYMSALCRMGFLDEAFRQVDVMHSRGVYMTIETVNILFD 297
Query: 313 CLTDTSFYSSLIFILSKA------VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
CL S +S + +L + V YNTM+S C + LKL + + P
Sbjct: 298 CLCRGSMFSEALTLLECSEELNWDVDVFCYNTMMSRLCDTGDIARVLKLLVDLVKKGIGP 357
Query: 367 DCETHARSLKMCCHKKRMK 385
D + +++ C + K
Sbjct: 358 DMFSFTIAIRSLCRAGKFK 376
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 110/281 (39%), Gaps = 40/281 (14%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G+ TYN + AL + G + E +++D + + V + +++L
Sbjct: 249 GWTPNAVTYNIYMSAL---CRMGFLDEAFRQVDVMHSRGVYMT----------IETVNIL 295
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIF--DVLIHGWCKTRKSDYAQKAMKEMFQHG 242
D L + + + A + L+ + ++ +F + ++ C T K + ++ + G
Sbjct: 296 FDCLCRGSMFSEALTL-LECSEELNWDVDVFCYNTMMSRLCDTGDIARVLKLLVDLVKKG 354
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
PD S+T I CR F+ L KG + V+ ++H L A +++E L
Sbjct: 355 IGPDMFSFTIAIRSLCRAGKFKVAKCLL---DNKGIEYDVVAFNTLIHGLCMAGELHEML 411
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362
+ Y M S + + +I S C E G A+K+ + E
Sbjct: 412 QTYMDMTSRNVFPNN----------------FTIGMVIDSFCKNREFGAAIKVFLEYSEG 455
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
PD ++ + K +L L+R M SKG+V
Sbjct: 456 CLVPD-----HFFRLNTWLVKAKGWEYLLTLLRTMRSKGLV 491
>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 988
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 82/373 (21%), Positives = 147/373 (39%), Gaps = 84/373 (22%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVS--------------LA 167
+ G + TYN ++ K + F +L +E+ L G + L
Sbjct: 269 SMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREM--LGRGALPTVVTYNTIMYSLCRLG 326
Query: 168 AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FD 216
+S R LD LM LV N++ + Y F + + L S++ ++
Sbjct: 327 RVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYN 386
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK----------- 265
LI G C+T D A+ +M +HG PD V++T + +C+ +
Sbjct: 387 TLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSR 446
Query: 266 ------VDYTLK------------------EMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
+ YT + EM+ +G P +IT ++++ L K +A
Sbjct: 447 GLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDA 506
Query: 302 LKVYEKMKSDDCLTDTSFYSSLI--FILSKAVR-----------------FLIYNTMISS 342
++ +KM+ + + D Y+S+I ++S +R + Y +I S
Sbjct: 507 NELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHS 566
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
VR A K ++++ P+ T+ + C K+ M D + NL EM SKG+
Sbjct: 567 YAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLC-KENMMD--VAYNLFAEMESKGV 623
Query: 403 VPQESTHKMLAEE 415
P + T+ +L E
Sbjct: 624 SPNKYTYTILINE 636
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 127/278 (45%), Gaps = 39/278 (14%)
Query: 152 LVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCIS 209
+V E++E+ + + T++ + +MD+ K V A +V ++ C
Sbjct: 187 MVNEVEEVYSVMIKCQIRPTIV------TFNTMMDSRCKEGEVGRAVEVLDVMRMFGC-D 239
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+ ++VL++G + D A++ +++M G +Y I +C+++ F + +
Sbjct: 240 PNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDL 299
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
+EM +G P+V+T +M++L + ++ +A + + M ++D + D Y++LI+ S+
Sbjct: 300 RREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSR 359
Query: 330 AVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCK----P 366
F + YNT+I C GN L + + +++D K P
Sbjct: 360 LGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGC---RTGN-LDIAKGMKDDMIKHGLCP 415
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
D T ++ C +M + + L EMLS+G+ P
Sbjct: 416 DVVTFTILVRGFC---QMGNLPMAKELFDEMLSRGLKP 450
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 19/204 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++VLI+G CK D A + +++M G PD V+YT I + RK + +M
Sbjct: 490 YNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDML 549
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+KG PSV+T T+++H+ ++ A K +++M+ + +
Sbjct: 550 KKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNV----------------I 593
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN +I C + A L ++E P+ T+ + + + +D L L
Sbjct: 594 TYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDA---LKLY 650
Query: 395 REMLSKGIVPQESTHKMLAEELEK 418
++ML + I P TH L + L K
Sbjct: 651 KDMLDREIKPDSCTHSALMKHLSK 674
>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 112/267 (41%), Gaps = 33/267 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
GY T TYN ++ L KSK +DE N Y L MS L
Sbjct: 831 GYKSTYVTYNTIISGLVKSKM----------LDEAINLYYQL--MSEGFSPTPC-TYGPL 877
Query: 185 MDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D L+K ++ A +F + +C + I+++L++G+ ++ + + M + G
Sbjct: 878 LDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGM 937
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+PD SYT I+ C + K++ + G +P +IT +++H L K+ ++ EAL
Sbjct: 938 NPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALS 997
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSAC 344
+Y M+ + Y+SLI L KA + YN +I
Sbjct: 998 LYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYS 1057
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETH 371
V NA ++ C+P+ T+
Sbjct: 1058 VSGSPENAFAAYGRMIVGGCRPNSSTY 1084
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 25/246 (10%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
I L++ ++ LI+ K+ A K M G P +Y+ + + + +D V
Sbjct: 167 IVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVV 226
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
L EM+ +G +P+V + TI + L +A ++ EA ++ KM+ + C D + LI IL
Sbjct: 227 GLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQIL 286
Query: 328 SKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
A R + Y T++ + + ++ ++ D +
Sbjct: 287 CDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNV 346
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
++ ++ C R+ + L++ EM KGI+PQ+ ++ L K N R
Sbjct: 347 VSYTAAVDALCQVGRVDE---ALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFN---RA 400
Query: 429 DELLTH 434
EL H
Sbjct: 401 LELFNH 406
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 22/243 (9%)
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D L + V A VF + K + Q ++ LI G+ K + + A + M HG
Sbjct: 353 VDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGP 412
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+P+G ++ FI ++ + + K + M+ KG P V+ V++ L K ++ A +
Sbjct: 413 TPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKR 472
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS 363
V+ ++K+ D Y+ +I SKA S A+K+ ++ E+
Sbjct: 473 VFHELKAMGISPDNITYTMMIKCCSKA----------------SNADEAMKIFAEMIENR 516
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGN 423
C PD + M R + + ++EM + P + T+ L L ++ G
Sbjct: 517 CAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEM---NLEPTDCTYNTLLAGLGRE--GK 571
Query: 424 AKE 426
KE
Sbjct: 572 VKE 574
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 114/278 (41%), Gaps = 29/278 (10%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKA 234
LD +S ++ K A+++ KF++ +SL + ++ LI G D A++
Sbjct: 729 LDDLFLSPIIRHFCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEEL 788
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
EM + G PD +Y ++ + + +EM KG K + +T ++ L K
Sbjct: 789 FSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVK 848
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LI 335
+K + EA+ +Y ++ S+ Y L+ L K I
Sbjct: 849 SKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAI 908
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
YN +++ + + +L + + E PD +++ + C R+ DG L+ +
Sbjct: 909 YNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDG---LSYFK 965
Query: 396 EMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
++ G+ P T+ +L L K R++E L+
Sbjct: 966 QLTDMGLEPDLITYNLLIHGLGKSG------RLEEALS 997
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 86/203 (42%), Gaps = 19/203 (9%)
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+ +++G KT + A++ E+ G SPD ++YT I+ + + + EM E
Sbjct: 455 NAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIE 514
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR--- 332
C P V+ ++ L KA + EA K++ ++K + Y++L+ L + +
Sbjct: 515 NRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKE 574
Query: 333 ----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+ YNT++ C E AL + + + C PD ++ +
Sbjct: 575 VMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMY 634
Query: 377 MCCHKKRMKDGMLVLNLMREMLS 399
+ R+ + + M+++L+
Sbjct: 635 GLVKEGRLDEAFWMFCQMKKVLA 657
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D AM+ L+D L K A+K+F + K+ + + ++ L+ G + K + +
Sbjct: 520 DVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLL 579
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ M + F P+ ++Y ++ C+ + L M GC P + + VM+ L K
Sbjct: 580 EGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKE 639
Query: 296 KQIYEALKVYEKMK 309
++ EA ++ +MK
Sbjct: 640 GRLDEAFWMFCQMK 653
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 110/269 (40%), Gaps = 31/269 (11%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVL-----IHGWCKTRKSD 229
++D ++ LM+ ++KR+ + ++F + I+ S + D L I +CK +++
Sbjct: 693 KVDRSSVHSLMEGILKRDGTEKS----IEFAENIASSGLLLDDLFLSPIIRHFCKHKEAL 748
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
A + +K+ G S SY I E + EM+ GC P T +++
Sbjct: 749 AAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLIL 808
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE 349
A+ K+ +I + LK+ E+M + Y S ++ YNT+IS
Sbjct: 809 DAMGKSMRIEDMLKIQEEMHNKG-------YKS---------TYVTYNTIISGLVKSKML 852
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
A+ L ++ + P T+ L ++D + + EML G P + +
Sbjct: 853 DEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFD---EMLECGCEPNCAIY 909
Query: 410 KMLAEELEKKSLGNAKERIDELLTHATEQ 438
+L L + E++ EL EQ
Sbjct: 910 NIL---LNGYRIAGDTEKVCELFESMVEQ 935
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 25/149 (16%)
Query: 260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF 319
E R L M+E G + T +++ L K+ EA+ VY+ M +D +
Sbjct: 149 EGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRT 208
Query: 320 YSSLIFILSK-----------------AVRFLIYNTMISSACVR--SEEGN---ALKLRQ 357
YS L+ K VR +Y+ I C+R + G A ++ +
Sbjct: 209 YSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTI---CIRVLGQAGRLEEAYRILR 265
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKD 386
K+EE+ CKPD T+ +++ C R+ D
Sbjct: 266 KMEEEGCKPDVVTNTVLIQILCDAGRLAD 294
>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
Length = 454
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 108/242 (44%), Gaps = 26/242 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D +V++DTL K ++ A + F + D ++ ++ L+ G CK + A
Sbjct: 44 DVFTYNVVIDTLCKARRISRAIEFFETMPEPDVVT-----YNTLLGGLCKNGRVAQACSL 98
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
M G +P V+YT I+ +C+ F L+ M + C P+V + +++ L K
Sbjct: 99 FGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCK 158
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
+++ +A +++E+MK C D + YNT+I CV+ A
Sbjct: 159 NRKVDQAYQLFEEMKLAGCKPDR----------------VTYNTLIHGLCVKQRLHEAKD 202
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
L + E+S +PD T ++ C R+K+ + L + M +G P TH +L
Sbjct: 203 LLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFV---LFQGMAKQGCAPDLVTHTVLVS 259
Query: 415 EL 416
+L
Sbjct: 260 KL 261
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 102/247 (41%), Gaps = 24/247 (9%)
Query: 184 LMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+++ L K V AY++F +K C ++ LIHG C ++ A+ + M ++
Sbjct: 152 IINGLCKNRKVDQAYQLFEEMKLAGC-KPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVEN 210
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
F PD +++T IE C ++ + M ++GC P ++T T+++ L +++ A
Sbjct: 211 SFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPA 270
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
L V + C Y+ + L + R A +L QK+
Sbjct: 271 LSVVRNYPA--CPEAVILYTPIFRELGR----------------RRGFDRAARLLQKMAR 312
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
P+ T+ K K+GM R ML +GI P + +L + K +
Sbjct: 313 RGVAPNVVTYTAFFK---GLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKANR 369
Query: 422 GNAKERI 428
+ E++
Sbjct: 370 LDMAEKM 376
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++VL+ G+CK + D A+K ++ M Q G P+ V+Y + H+CR+ + L M
Sbjct: 357 YNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMV 416
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEA 301
+G +P V T + ++ L + Q+ A
Sbjct: 417 SRGRQPDVATWSTLVAGLFRVGQVDAA 443
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 88/218 (40%), Gaps = 26/218 (11%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
L+ C+T K D A + EM + PD +Y I+ C+ + + + M E
Sbjct: 16 LVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPE-- 73
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF---- 333
P V+T ++ L K ++ +A ++ M+ Y++LI + K +F
Sbjct: 74 --PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAY 131
Query: 334 ---------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
Y ++I+ C + A +L ++++ CKPD T+ +
Sbjct: 132 GLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGL 191
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C K+R+ + +L+ M+ P + T L E L
Sbjct: 192 CVKQRLHEAK---DLLTVMVENSFQPDKITFTALIEGL 226
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 81/209 (38%), Gaps = 27/209 (12%)
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
+F P+ +SY ++ CR K T+ EM + P V T +V+ L KA++
Sbjct: 1 IFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARR 60
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNT 338
I A++ +E M D +T Y++L+ L K R + Y T
Sbjct: 61 ISRAIEFFETMPEPDVVT----YNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTT 116
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+I C + A L Q + C P ++ + C +++ L EM
Sbjct: 117 LIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQA---YQLFEEMK 173
Query: 399 SKGIVPQESTHKMLAEEL-EKKSLGNAKE 426
G P T+ L L K+ L AK+
Sbjct: 174 LAGCKPDRVTYNTLIHGLCVKQRLHEAKD 202
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 7/182 (3%)
Query: 146 FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205
F + E + D + +V M+ D +VL+ L R + A V +
Sbjct: 219 FTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNYP 278
Query: 206 DC---ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
C + L + IF L + R D A + +++M + G +P+ V+YT F + K+
Sbjct: 279 ACPEAVILYTPIFREL----GRRRGFDRAARLLQKMARRGVAPNVVTYTAFFKGLGDWKE 334
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
+ + M E+G +P ++ +++ KA ++ A K+ M + Y++
Sbjct: 335 GMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNT 394
Query: 323 LI 324
L+
Sbjct: 395 LV 396
>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Glycine max]
Length = 746
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 133/312 (42%), Gaps = 43/312 (13%)
Query: 134 NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNS 193
NA++ LG+ + +K ++EL LA M R +L++ L K
Sbjct: 285 NALLTWLGRGRD-------IKRMNEL------LAEMEKRKIRPSVVTFGILVNHLCKARR 331
Query: 194 VAHAYKVFLKFKD-------CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS-P 245
+ A +VF + + + +F+ LI G CK K + ++EM + P
Sbjct: 332 IDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRP 391
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
+ V+Y C I+ + + +F + ++M E+G +P+VIT ++ L K +++ A++ +
Sbjct: 392 NTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFF 451
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
+MK + + Y++L IS+ C + A++ +++ C
Sbjct: 452 NEMKGKGLKGNAATYTAL----------------ISAFCGVNNINRAMQCFEEMLSSGCS 495
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAK 425
PD + + C RM D +V++ ++ G S + +L KK
Sbjct: 496 PDAVVYYSLISGLCIAGRMNDASVVVSKLK---LAGFSLDRSCYNVLISGFCKKK---KL 549
Query: 426 ERIDELLTHATE 437
ER+ ELLT E
Sbjct: 550 ERVYELLTEMEE 561
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 97/209 (46%), Gaps = 18/209 (8%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
SL ++VLI G+CK +K + + + EM + G PD ++Y I + + DF
Sbjct: 529 FSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATAS 588
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+++M ++G +PSV+T ++HA K + E +K++ +M S + +
Sbjct: 589 KVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNT--------- 639
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+IYN +I + C ++ A+ L + ++ +P+ T+ LK KK +
Sbjct: 640 ------VIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHK- 692
Query: 388 MLVLNLMREMLSKGIVPQESTHKMLAEEL 416
LM M+ + P T ++L E L
Sbjct: 693 --AFELMDRMVEEACRPDYITMEVLTEWL 719
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 130/296 (43%), Gaps = 38/296 (12%)
Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-----VSLAAMSTVMRRLDTRAMSV 183
+P+ + ++ L KS + G ++ E+ + ++G+ + + R +
Sbjct: 173 SPQLCHGLLRVLLKSGRAGDALHVLDEMPQANSGFSVTGEIVFGELVRSGRSFPDGEVVG 232
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ L +R F D L+ L+ C +K+ A + + + + G
Sbjct: 233 LVAKLGERGV----------FPDGFKLTQ-----LVGKLCGDQKNGVAWEVLHCVMRLGG 277
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+ D S + R +D ++++ L EM+++ +PSV+T I+++ L KA++I EAL+
Sbjct: 278 AVDAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQ 337
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS 363
V+++++ S+ + + V ++NT+I C +E + L L ++++ +
Sbjct: 338 VFDRLRGKGG-------SNWVGVEPDVV---LFNTLIDGLCKVGKEEDGLSLLEEMKMGN 387
Query: 364 C-KPDCETHARSLKMCCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLAEEL 416
+P+ T+ C K G L R+M +G+ P T L + L
Sbjct: 388 INRPNTVTYN-----CLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGL 438
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 78/193 (40%), Gaps = 30/193 (15%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELS--------NGYVS-------LAAMSTVMRRLD 177
YN ++ K KK ++EL+ E++E N +S A S VM ++
Sbjct: 536 YNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMI 595
Query: 178 TRAMSVLMDTLVKRNSVAHAY----------KVFLKF--KDCISLSSQIFDVLIHGWCKT 225
L ++V ++ HAY K+F + + ++ I+++LI C+
Sbjct: 596 KEG---LRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRN 652
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
D A M++M P+ +Y ++ +K K + M E+ C+P IT
Sbjct: 653 NDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITM 712
Query: 286 TIVMHALEKAKQI 298
++ L +I
Sbjct: 713 EVLTEWLSAVGEI 725
>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 560
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 83/368 (22%), Positives = 140/368 (38%), Gaps = 65/368 (17%)
Query: 91 VDKVSEILRKRYPSPDKVV-----------------------EALKCFCFTWAKTQTGYM 127
VD V ILR+ PD +V L F WAK Q GY
Sbjct: 5 VDHVCNILRQLNWRPDTLVALSRVNRTLSAFHINEVLKHQKESGLALKFFDWAKEQEGYK 64
Query: 128 HTPETYNAMVEALGKSKKFGLMWELVKEI------------DELSNGYVSLAAMSTVMRR 175
H TY M+ +G+++ F L++E+ + L + Y + MR
Sbjct: 65 HDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEAMRI 124
Query: 176 L----------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCK 224
D L+D K +A ++ K + + + V+IH K
Sbjct: 125 FYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGK 184
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
K A K +EM + GF+P V+Y I+ + ++ +MQ+ G P +T
Sbjct: 185 AGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVT 244
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC 344
+I+M L + + EA ++ +M+ + D Y ++ + KA
Sbjct: 245 YSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGKA-------------- 290
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
R+ E AL+ QK+ + P+ + S + RM+ L ++ M + G+VP
Sbjct: 291 -RNAE-RALEWYQKMLDSGLTPNVQI---SNSLLGSYLRMQQFDLAFGVIETMKAWGLVP 345
Query: 405 QESTHKML 412
TH +L
Sbjct: 346 TLQTHTIL 353
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 114/253 (45%), Gaps = 40/253 (15%)
Query: 171 TVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDY 230
++R+L+ R +++ + V R A LK + L+ + FD W K
Sbjct: 10 NILRQLNWRPDTLVALSRVNRTLSAFHINEVLKHQKESGLALKFFD-----WAKE----- 59
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
Q G+ D +YT I R ++F L+EM+ +GC+P V+T ++H
Sbjct: 60 ---------QEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLIH 110
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEG 350
A +A + EA++++ +M+ + C D Y +L+ + SKA
Sbjct: 111 AYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKA----------------GFHD 154
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
NA+ + QK+++ +PD T++ + ++ + L L EM+ +G P T+
Sbjct: 155 NAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEA---LKLFEEMVERGFAPSLVTYN 211
Query: 411 MLAEELEKKSLGN 423
++ +L+ KS GN
Sbjct: 212 III-DLQAKS-GN 222
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 89/203 (43%), Gaps = 17/203 (8%)
Query: 106 DKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVS 165
KV EALK F + G+ + TYN +++ KS + + +L ++ + G+
Sbjct: 186 GKVSEALKLFE---EMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDA--GF-- 238
Query: 166 LAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL-SSQIFDVLIHGWCK 224
D S++M+ L + + A +F + + + + I+ V++ W K
Sbjct: 239 ---------HPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGK 289
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
R ++ A + ++M G +P+ + Y R + F ++ M+ G P++ T
Sbjct: 290 ARNAERALEWYQKMLDSGLTPNVQISNSLLGSYLRMQQFDLAFGVIETMKAWGLVPTLQT 349
Query: 285 CTIVMHALEKAKQIYEALKVYEK 307
TI++ + + Q ++ + + +
Sbjct: 350 HTILLSSCTASAQHHQVVNLMHR 372
>gi|302792409|ref|XP_002977970.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
gi|300153991|gb|EFJ20627.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
Length = 695
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 108/232 (46%), Gaps = 26/232 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++++I G+CK R + A ++EM + G P +Y+ ++ +C+ + K EM
Sbjct: 47 YNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMP 106
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
KGC+P ++ +++ L +A++I+EA +++ M S C D Y+++I
Sbjct: 107 AKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLD 166
Query: 325 ---FILSK------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
F+L + + F+ Y T+I C + A ++ +K+ E C C A S+
Sbjct: 167 EAVFLLERMKQEDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCA--CTEPAYSV 224
Query: 376 KMCCHKKRMKDGMLV--LNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAK 425
K + G LV + +M K + ++T+ ++ L K GN +
Sbjct: 225 ---LFNKLQRAGKLVEASRVYSDMCRKNVCMTDNTYSLVVLGLSKMDGGNVE 273
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 139/326 (42%), Gaps = 50/326 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELS-----NGYVSLAA----MSTVMRRLDTRA-- 180
+YN +++ K++ ++E++EL + Y S+ V + +D A
Sbjct: 46 SYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEM 105
Query: 181 -----------MSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRK 227
+VL+ L + + A ++F + + C ++ +I G CK +K
Sbjct: 106 PAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGC-KPDVVTYNTMIAGLCKWKK 164
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
D A ++ M Q SP V+YT I+H C+ ++ ++M E C + ++
Sbjct: 165 LDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCACTEPAYSV 224
Query: 288 VMHALEKAKQIYEALKVYEKM-KSDDCLTDTSFYSSLIFILSK----------------- 329
+ + L++A ++ EA +VY M + + C+TD + YS ++ LSK
Sbjct: 225 LFNKLQRAGKLVEASRVYSDMCRKNVCMTDNT-YSLVVLGLSKMDGGNVEAAKLVTEMMG 283
Query: 330 ---AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
A F Y+ +I+ C G A ++ Q++ P T+ L+ +++D
Sbjct: 284 KKIAPDFYAYSILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQD 343
Query: 387 GMLVLNLMREMLSKGIVPQESTHKML 412
M L ML +G +P ++ ++
Sbjct: 344 AM---ELTYFMLDQGRLPDTCSYNLM 366
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDY-AQKAMKE 237
A SVL + L + + A +V+ + + ++ + +++ G K + A K + E
Sbjct: 221 AYSVLFNKLQRAGKLVEASRVYSDMCRKNVCMTDNTYSLVVLGLSKMDGGNVEAAKLVTE 280
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M +PD +Y+ I C+ + + +EM+ +G P+V+T ++ L +
Sbjct: 281 MMGKKIAPDFYAYSILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAK 340
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ +A+++ M L DT Y+ +I
Sbjct: 341 LQDAMELTYFMLDQGRLPDTCSYNLMI 367
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 60/299 (20%), Positives = 120/299 (40%), Gaps = 52/299 (17%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI------------DELSNGYVSLAAMSTVM------ 173
Y+ ++ L K+++ G E+ +E+ + L G +S A + M
Sbjct: 292 AYSILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFM 351
Query: 174 ----RRLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKS 228
R DT + ++++ AY +F KD I L++ ++ +I G+ K
Sbjct: 352 LDQGRLPDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLNTWTYNFMIVGFIKDEAW 411
Query: 229 DYAQKAMKEMFQHG-----FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
A K M Q G +P+ +Y I C+ + L M++KG PS+
Sbjct: 412 SSAWMLFKRM-QSGKNDKVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLK 470
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI--------LSKAVRFL- 334
+++ L +A ++ +A ++Y++M +C SS I + + +A FL
Sbjct: 471 IWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVG--SSNILLDGILRRGSVDEAKDFLK 528
Query: 335 ------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
Y+ ++ C + + A KL +++ D +P+ + + L C +
Sbjct: 529 QMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRDGKRPENQGLRQLLGALCAQ 587
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 17/170 (10%)
Query: 96 EILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE 155
EIL D+V EA K A G++ + + + ++ L ++ + +EL KE
Sbjct: 438 EILISSLCKTDQVEEAFKLLS---AMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKE 494
Query: 156 IDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI- 214
MS + + + ++L+D +++R SV A + D + +
Sbjct: 495 -------------MSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFT 541
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
+D L+ G C K+D A+K ++E+ + G P+ + C + DF+
Sbjct: 542 YDKLVVGLCWQGKADQARKLVEELVRDGKRPENQGLRQLLGALCAQGDFQ 591
>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 418
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 127/310 (40%), Gaps = 36/310 (11%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W +E L GY + ++LM + VK
Sbjct: 102 DTXRKVIEHLMKLKYFKLVWGFYEE--SLEYGYPA-----------SLYFFNILMHSFVK 148
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A VF K + S F+ L++G+ K D + M G PD +
Sbjct: 149 EGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYT 208
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+ I C+E + EM G P+ +T T ++ K ++ A+++Y++M
Sbjct: 209 YSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 268
Query: 310 SDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEG 350
S D Y++LI+ L K + Y T+I +C
Sbjct: 269 SQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLE 328
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A + R+++ +++ + D + + C + R D ++REMLS G+ P+ T+
Sbjct: 329 TAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLKPEIGTYT 385
Query: 411 MLAEELEKKS 420
M+ E KK
Sbjct: 386 MIINEFCKKG 395
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 134/341 (39%), Gaps = 49/341 (14%)
Query: 98 LRKRYPSPDKVVE---ALKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM- 149
R + + KV+E LK F W + GY + +N ++ + K + L
Sbjct: 97 FRVPFDTXRKVIEHLMKLKYFKLVWGFYEESLEYGYPASLYFFNILMHSFVKEGEIRLAQ 156
Query: 150 --------WEL---VKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTL 188
W L V + L NGY+ L AM + D SVL++ L
Sbjct: 157 SVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGL 216
Query: 189 VKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
K + + A ++F + + + + F LI G CK + D A + K+M SPD
Sbjct: 217 CKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDL 276
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
++Y I C++ D ++ EM KG KP IT T ++ K + A + ++
Sbjct: 277 ITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKR 336
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
M ++ D Y++L IS C +A K+ +++ KP+
Sbjct: 337 MIKENIRLDDVAYTAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPE 380
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
T+ + C K + G L++EM G VP T
Sbjct: 381 IGTYTMIINEFCKKGDVWTGS---KLLKEMQRDGYVPSVVT 418
>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 104/241 (43%), Gaps = 22/241 (9%)
Query: 183 VLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+LMD L K V A ++ + K + + ++ LI G+C D + EM +
Sbjct: 50 ILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEK 109
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G SP+ V Y+C I +C++ +R+ L M E+G +P V T T ++ L K + +A
Sbjct: 110 GISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKA 169
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFIL-------------------SKAVRFLIYNTMISS 342
L +++ M T Y+ LI L K + + YNT+I
Sbjct: 170 LDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMG 229
Query: 343 ACVRSEEGNALKLRQKIEEDS--CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
C + A+KL + ED +PD T ++ C + R+ + + + M E S
Sbjct: 230 LCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSF 289
Query: 401 G 401
G
Sbjct: 290 G 290
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 154/369 (41%), Gaps = 61/369 (16%)
Query: 96 EILRKRYPSPDKVVEA--LKCFC--FTWAKTQTGYMHT-------PE--TYNAMVEAL-- 140
E+L K SP+ VV + + FC W + T +HT P+ TY M+ L
Sbjct: 105 EMLEKGI-SPNVVVYSCLINGFCKKGLW-REATAVLHTMTERGIQPDVYTYTCMIGGLCK 162
Query: 141 -GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYK 199
G+++K +++L+ E E T +VL++ L K + A+K
Sbjct: 163 DGRARKALDLFDLMTEKGE----------------EPSTVTYNVLINGLCKEGCIGDAFK 206
Query: 200 VF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG--FSPDGVSYTCFIEH 256
+F + L ++ LI G C K D A K + + G PD +++ I+
Sbjct: 207 IFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQG 266
Query: 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316
C+E K M E+G ++ TC I++ K+ I +A+++++++ +
Sbjct: 267 LCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPS 326
Query: 317 TSFYSSLI----------FILSKAVRFLI---------YNTMISSACVRSEEGNALKLRQ 357
++ YS +I F R I YNT+++S C S A +L Q
Sbjct: 327 STTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQ 386
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
+++E +C+PD + + + +LN M++M G+ P T+ L
Sbjct: 387 EMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQM---GLTPDAYTYSSFINRLS 443
Query: 418 KKSLGNAKE 426
K LG +E
Sbjct: 444 K--LGQMEE 450
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 23/208 (11%)
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD VSY I C+EK K L EM+ C+P+ T I+M L K ++ EA+++
Sbjct: 8 PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67
Query: 305 YEKMKSDDCLTDTSFYSSLIF-----------------ILSKAV--RFLIYNTMISSACV 345
+MK D YS+LI +L K + ++Y+ +I+ C
Sbjct: 68 LGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCK 127
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ A + + E +PD T+ + C R + + + +LM E KG P
Sbjct: 128 KGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTE---KGEEPS 184
Query: 406 ESTHKMLAEELEKKS-LGNAKERIDELL 432
T+ +L L K+ +G+A + + +L
Sbjct: 185 TVTYNVLINGLCKEGCIGDAFKIFETML 212
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 3/145 (2%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD--VLIHGWCKTRKSDYAQKAMKEMF 239
SV++D K + + A +F + K LS +FD L+ CK + A++ +EM
Sbjct: 331 SVMIDGFCKMHMLNFAKGLFSRMK-ISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMK 389
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ PD +S+ I+ + D L +MQ+ G P T + ++ L K Q+
Sbjct: 390 ESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQME 449
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLI 324
EA ++ M + D Y SLI
Sbjct: 450 EAKGAFDSMIASGITPDNHVYDSLI 474
>gi|359495078|ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g20740-like [Vitis vinifera]
Length = 1294
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 139/333 (41%), Gaps = 43/333 (12%)
Query: 94 VSEILRKRYPSPDKVVEALKC-----FC---FTWAKTQTGYMHTPETYNAMVEALGKSKK 145
V+++ + R +P V E LK C F WA Q GY H +YNA L +S +
Sbjct: 647 VADLNKLRRVTPVLVAEVLKVQTDPVICSKFFHWAGKQKGYKHNFASYNAFAYCLNRSNQ 706
Query: 146 FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205
F ++ EL M+ + + +L+ + N Y V+ K K
Sbjct: 707 F----RAADQVPEL---------MNMQGKPPSEKQFEILIRMHIDANRGLRVYYVYEKMK 753
Query: 206 DCISLSSQIF--DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263
+ ++F + ++ G KT D A ++ + G + V+Y ++ C+
Sbjct: 754 K-FGIKPRVFLYNRIMDGLVKTGHLDLAMSVYEDFKEDGLVEESVTYMILVKGLCKAGRI 812
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+V +EM++ +P V+ T ++ AL ++ E +++++MK L D + Y SL
Sbjct: 813 DEVLEVWEEMRKDKVEPDVMAYTTLVAALCNGNRVGEGFELFKEMKQKKYLIDRAIYGSL 872
Query: 324 I--FILSKAVR-----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
I F++++ V IYN++I C + A KL Q +S
Sbjct: 873 IEGFVVNERVGSACDLLKDLMDSGYRADLAIYNSLIEGMCNVKQVDKAYKLFQVTVHESL 932
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+P+ T L KRM D +L M+++
Sbjct: 933 EPNFLTVKPMLVSYAEMKRMDDFCSLLGQMQKL 965
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS-PDGVSYTCFIEHYCREKDFRK 265
C S + L+ G CK+ + D A +++ + S P YT I H C+ + K
Sbjct: 1070 CQLPSVAAYRSLVKGLCKSEEIDAAIMLVRDCLANVTSGPMEFKYTLTILHACKSGNAEK 1129
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318
V L EM ++GC P +T + ++ + K + EA KV+ M+ LT+ +
Sbjct: 1130 VIDVLNEMMQEGCTPDEVTYSALISGMCKHGTLEEARKVFSNMRERKLLTEAN 1182
Score = 38.1 bits (87), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 144/353 (40%), Gaps = 68/353 (19%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
Q Y+ Y +++E +++ G +L+K++ + +GY R D +
Sbjct: 859 QKKYLIDRAIYGSLIEGFVVNERVGSACDLLKDL--MDSGY-----------RADLAIYN 905
Query: 183 VLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L++ + V AYK+F + + + + ++ + + ++ D + +M +
Sbjct: 906 SLIEGMCNVKQVDKAYKLFQVTVHESLEPNFLTVKPMLVSYAEMKRMDDFCSLLGQMQKL 965
Query: 242 GFSP-DGVS--YTCFIEHYCREKDFRKVDYTLKEMQEKG-CKPSVITCTIVMHALEKAKQ 297
GF D +S ++ IE R K +V + ++ KG C S+ I+M A+ + +
Sbjct: 966 GFPVIDDLSKFFSVMIEKGERLKLALEV---FEHLKAKGYCSISIYN--ILMEAIHRTGE 1020
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLI--FILSKAVR-----------------FLIYNT 338
+ +AL +++ +K + D+S YS+ I F+ V+ Y +
Sbjct: 1021 VKKALSLFDDIKDSNFKPDSSTYSNAIICFVEVGDVQEACACYNKIIEMCQLPSVAAYRS 1080
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM-------CCHKKRMKDGMLVL 391
++ C E A+ L + DC + S M H + + V+
Sbjct: 1081 LVKGLCKSEEIDAAIMLVR---------DCLANVTSGPMEFKYTLTILHACKSGNAEKVI 1131
Query: 392 NLMREMLSKGIVPQESTHKMLAE--------ELEKKSLGNAKERIDELLTHAT 436
+++ EM+ +G P E T+ L E +K N +ER +LLT A
Sbjct: 1132 DVLNEMMQEGCTPDEVTYSALISGMCKHGTLEEARKVFSNMRER--KLLTEAN 1182
>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 572
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 116/262 (44%), Gaps = 35/262 (13%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL----SSQIFDVLIHGWCKTRKSDYAQ 232
+T +++L+++ N + A+ V D + L S+ F LI G C K A
Sbjct: 88 NTYTLNILINSFCHLNRLGFAFSVL---GDILKLGYQPSTATFTTLIRGLCVEGKIGEAL 144
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ +M GF PD ++Y I C+ + L+ M+++ C+P+V+ + ++ +L
Sbjct: 145 QLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSL 204
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------SKAVRF------------- 333
K +Q+ EAL ++ M + + YSSLI L +A+R
Sbjct: 205 CKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQ 264
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIE---EDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
L +NT++ + C +EG +K ++ + KPD T+ + C + M
Sbjct: 265 LTFNTLVDALC---KEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGK---T 318
Query: 391 LNLMREMLSKGIVPQESTHKML 412
+N+ M+ KG VP ++ L
Sbjct: 319 VNVFDTMVRKGCVPSVISYTTL 340
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 138/340 (40%), Gaps = 41/340 (12%)
Query: 110 EALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAM 169
EA++ F +A M T+N +V+AL K G++ + +D M
Sbjct: 247 EAIRLF---YAMIHRKIMPDQLTFNTLVDALCKE---GMVVKAHYVVD----------VM 290
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRK 227
+ D + LMD R+ + VF + K C+ S + LI+G+CK +
Sbjct: 291 IQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVP-SVISYTTLINGYCKIQI 349
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
D A +EM Q G PD V+Y I C R EM G P ++T I
Sbjct: 350 MDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRI 409
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA-----VRFLI------- 335
+ L K ++ EA+ + + ++ + D YS ++ + +A R L
Sbjct: 410 LFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKG 469
Query: 336 -------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
Y MI+ C + A KL +++E+ C P+ T+ + R + +
Sbjct: 470 LHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITR---GFLRNNETL 526
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
+ L +EMLS+G ST +L E L L + ++I
Sbjct: 527 RAIQLFQEMLSRGFSIDVSTTTLLVEMLSDDGLDQSVKQI 566
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/359 (21%), Positives = 141/359 (39%), Gaps = 52/359 (14%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL 166
K+ EAL+ F T G+ TY ++ L K ++ +++ N ++
Sbjct: 139 KIGEALQLF---DKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQ-RNCRPTV 194
Query: 167 AAMSTVM------RRLDTRAMSVLMDTLVKR--------NSVAHAYKVFLKFKDCISLSS 212
ST++ R+L T A+S+ D L K +S+ H + +K+ I L
Sbjct: 195 VVYSTIIDSLCKDRQL-TEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFY 253
Query: 213 QI-----------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
+ F+ L+ CK A + M Q PD V+Y ++ +C
Sbjct: 254 AMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRS 313
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
+ K M KGC PSVI+ T +++ K + + +A+ ++E+M + DT Y+
Sbjct: 314 EMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYN 373
Query: 322 SLIFILSKAVR-------------------FLIYNTMISSACVRSEEGNALKLRQKIEED 362
+LI L R + Y + C A+ L + IE
Sbjct: 374 TLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGT 433
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ PD ++ + C ++ +L ++ SKG+ P T+ ++ L ++ L
Sbjct: 434 NLDPDIHIYSIVMDGMCRAGELEAAR---DLFSKLSSKGLHPDVRTYTIMINGLCQQGL 489
>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
Length = 702
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 19/206 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++V +HG CK + D A + + EM + +PD ++Y+ I+ +C+ K D M
Sbjct: 328 YNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMM 387
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
C P +T ++H + K+ EA +V+E M + F L
Sbjct: 388 VHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDM------VNAGFIPGL----------Q 431
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN ++ C +AL++ K++ +PDC T+A ++ C +R+ + L++M
Sbjct: 432 TYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVM 491
Query: 395 REMLSKGIVPQESTHKMLAEELEKKS 420
+ +VP + L E L K+
Sbjct: 492 E---ADNVVPNGAICHALVEVLCKQG 514
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 138/318 (43%), Gaps = 42/318 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA + G+ H T ++ A K+K+ L+KE EL L + +M
Sbjct: 63 FQWAGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKE--ELE----PLCFPNEIM--- 113
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ +++ K V A+++ + K+ + + + LI G C+ + D A +
Sbjct: 114 ----YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQF 169
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK-----GCKPSVITCTIVMH 290
K M + SP+ ++Y + C+ + +M+++ GC+P VI+ + V+
Sbjct: 170 KSMGEE-CSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVID 228
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AV 331
AL KA+++ +A + +++M++ C + YSSLI L K +
Sbjct: 229 ALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGI 288
Query: 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+ +N M+ + E+ A + +++ + KP+ T+ ++ C R+ + +L
Sbjct: 289 NIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRIL 348
Query: 392 NLMREMLSKGIVPQESTH 409
EM+ + P T+
Sbjct: 349 ---LEMVESKVTPDVITY 363
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 106/260 (40%), Gaps = 33/260 (12%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK------DCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+VLMD + +SV A +++ K K DC + LI C+ R+ D A++ +
Sbjct: 434 NVLMDCVCGADSVESALEIYHKMKRKKRQPDC-----NTYAPLIQCLCRARRVDEAKEFL 488
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M P+G +E C++ + + L + E GC+P T I++ L
Sbjct: 489 DVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLR 548
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
K+ A K+ ++S + D + YS ++ C + A+++
Sbjct: 549 KKWEAASKL---LRSPGFVADAATYS----------------LCVAEICKAGKPDEAVEV 589
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+++ +PD T+ L+ C R++ + +M S+G P T+ +L E
Sbjct: 590 IEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFE---KMASRGCAPGLVTYTLLIGE 646
Query: 416 LEKKSLGNAKERIDELLTHA 435
+ + RI E + A
Sbjct: 647 ACSADMADEAFRIFEAMVAA 666
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 34/208 (16%)
Query: 236 KEMFQHGFSPDGVSYTC--FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
K FQH +YTC + + + K + LKE E C P+ I T V++
Sbjct: 69 KPGFQHN------AYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFC 122
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------------LI 335
KA Q+ +A ++ ++MK D +S+LI L + R +
Sbjct: 123 KAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECSPNVIT 182
Query: 336 YNTMISSACVRSEEGNALKLRQKIEE-----DSCKPDCETHARSLKMCCHKKRMKDGMLV 390
YNT+++ C + AL+L +E+ C+PD +++ + C +R+
Sbjct: 183 YNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEY 242
Query: 391 LNLMREMLSKGIVPQESTHKMLAEELEK 418
MR + G P T+ L + L K
Sbjct: 243 FKRMRAV---GCAPNVVTYSSLIDGLCK 267
>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 701
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 135/306 (44%), Gaps = 38/306 (12%)
Query: 130 PE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT 187
PE TY ++ L K+ + ++ KE ++ +LD A S ++D
Sbjct: 394 PESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPG-------------KLDAYAYSSMVDG 440
Query: 188 LVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
L K + A + + K L + + LI+G+ + K + A +EM G SP
Sbjct: 441 LCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPT 500
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
VSY I+ C+ + F + +KEM EK KP +ITC+++M L + K+I AL +++
Sbjct: 501 IVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQ 560
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTMISSACVRS-------EEG----- 350
+ D + Y+ L+ L + +Y+ M S CV + EG
Sbjct: 561 QALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKVR 620
Query: 351 ---NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
A ++ I +D PD ++ ++K C R+ D + LN + L++GI+P
Sbjct: 621 DYEKASEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLN---DALNRGILPTAV 677
Query: 408 THKMLA 413
T +L
Sbjct: 678 TWNILV 683
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 20/236 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++L+ L + V A ++ L K S + VLIHG CK + + A K KE
Sbjct: 365 NILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAED 424
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
D +Y+ ++ C+E + + +M ++G K C +++ +A ++ +
Sbjct: 425 GPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLED 484
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A+ + +M+ C Y++LI L KA RF A +++
Sbjct: 485 AINFFREMECKGCSPTIVSYNTLIKGLCKAERF----------------SEAYSFVKEML 528
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
E KPD T + + C +K+++ + LNL ++ L KG P + + +L L
Sbjct: 529 EKEWKPDMITCSLLMDGLCQEKKIE---MALNLWQQALDKGFKPDITMYNILMHGL 581
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/285 (19%), Positives = 115/285 (40%), Gaps = 37/285 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELS-NGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+Y ++ + K G + +K DE+S G V+ D ++L+D K
Sbjct: 188 SYGTLINGM---VKVGDLLGALKVFDEMSVRGVVA-----------DVTCYNMLIDGFFK 233
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
+++ + KDC + + ++++I+G CK + D + + + M ++ D
Sbjct: 234 HGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMF 293
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+Y+ I C + KE+ E +T +++ +A +I E+ +++ M
Sbjct: 294 TYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVM 353
Query: 309 KSDDCLTDTSFYSSLI-----------------FILSKAVR--FLIYNTMISSACVRSEE 349
++C T S Y+ LI + K R Y +I C
Sbjct: 354 GKENCQTVVS-YNILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRL 412
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
ALK+ ++ E+ K D ++ + C + RM + + ++N M
Sbjct: 413 NKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQM 457
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 23/231 (9%)
Query: 178 TRAMSVLMDTLVKRN--SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
R+ + L++ V+ N A ++ + + D +S + Q +++LI CK ++ + A +
Sbjct: 116 VRSYNTLLNAFVELNEWDRAESFSRYFESMD-VSPNLQTYNILIKISCKKQQIEKAISLL 174
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M+ PD SY I + D EM +G V +++ K
Sbjct: 175 DWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRGVVADVTCYNMLIDGFFKH 234
Query: 296 KQIYEALKVYEKMKSD-DCLTDTSFYSSLIFILSKAVRF-------------------LI 335
+ +++E++ D + Y+ +I L K RF
Sbjct: 235 GDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFT 294
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
Y+++I C A+++ ++I E S D TH L C ++K+
Sbjct: 295 YSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNAMLNGFCRAGKIKE 345
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 41/218 (18%), Positives = 93/218 (42%), Gaps = 23/218 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L++ + + + D A+ + SP+ +Y I+ C+++ K L M
Sbjct: 119 YNTLLNAFVELNEWDRAESFSRYFESMDVSPNLQTYNILIKISCKKQQIEKAISLLDWMW 178
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF--------- 325
+ KP V + +++ + K + ALKV+++M + D + Y+ LI
Sbjct: 179 SQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYD 238
Query: 326 ----ILSKAVR-------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
I + V+ + YN MI+ C +L++ +++ ++ + D T++
Sbjct: 239 KGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSL 298
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C + DG + + +E++ +V TH +
Sbjct: 299 IHGLCEAGNI-DG--AVRVYKEIVESSLVVDAVTHNAM 333
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 80/184 (43%), Gaps = 22/184 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G T +YN +++ L K+++F + VKE+ E + D S+L
Sbjct: 496 GCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKE-------------WKPDMITCSLL 542
Query: 185 MDTLVKRNSVAHAYKVFLK-----FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
MD L + + A ++ + FK I++ +++L+HG C K + A + M
Sbjct: 543 MDGLCQEKKIEMALNLWQQALDKGFKPDITM----YNILMHGLCSVCKLEDALQLYSHMK 598
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ P+ V+ +E + +D+ K + + G P +I+ I + L +I
Sbjct: 599 RSTCVPNLVTRNTLMEGLYKVRDYEKASEIWDCILKDGLHPDIISYNITIKGLCSCSRIS 658
Query: 300 EALK 303
+A++
Sbjct: 659 DAIE 662
>gi|357493977|ref|XP_003617277.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518612|gb|AET00236.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 502
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 28/227 (12%)
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF--DVLIHGWCKTRKSDYAQKAMKE 237
A + L+ ++VK +V+L + L +F + LI+G CK + A+ + +
Sbjct: 114 ACNALLGSIVK-------VRVYLSEMEAKGLKPGLFTYNALINGLCKEGGYESAKCVLDK 166
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M GF PD ++ + R++D + + EM + G P +I+ + ++ + +
Sbjct: 167 MLGVGFCPDAATFNPVLVESFRKEDVWEAERVFNEMLQCGVVPDLISFSSIIGVFSRNGE 226
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
+ AL +EKMK + DT +IY +I+ C ++ ALK+R
Sbjct: 227 LGRALAYFEKMKGVGLVPDT----------------VIYTILINGYCRNNDVSGALKVRN 270
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
++ E SC D T+ L C K + D L +EM+ +G+ P
Sbjct: 271 EMVERSCVMDVVTYNTLLNGLCRGKMLDDAD---ELFKEMVERGVFP 314
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 117/295 (39%), Gaps = 38/295 (12%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + S ++ + + A F K K + + I+ +LI+G+C+ A K
Sbjct: 210 DLISFSSIIGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNNDVSGALKVR 269
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM + D V+Y + CR K D KEM E+G P T T ++H K
Sbjct: 270 NEMVERSCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKD 329
Query: 296 KQIYEALKVYE--KMKSD---------DCLTDTSF--YSSLIFILSKAVRF-LIYNTMIS 341
+ +AL ++E ++S+ D ++ F Y S +++ L+ ++I
Sbjct: 330 GNMTKALSLFETITLRSEMEKAKELWRDMISREIFPHYISFSILINGFCSLGLVSESLIK 389
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDC--------------ETHARSLKMCCHKKRMKDG 387
A + + PDC T+ L RM++
Sbjct: 390 GYLRAGNVSKANDFLNTMVSEGVPPDCITYNTLINRLLPDLVTYNAILGGFSRHGRMQEA 449
Query: 388 MLVLNLMREMLSKGIVPQESTH-KMLAEELEKKSLGNAKERIDELLTHATEQRTF 441
+VL+ +M+ KGI P +ST+ ++ + K ++ A DE+L QR F
Sbjct: 450 EMVLH---KMIDKGINPDKSTYTSVINGYVSKDNMKEAFRVHDEML-----QRGF 496
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 2/143 (1%)
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
VL+++ ++ V A +VF + C + I F +I + + + A ++M
Sbjct: 182 VLVESF-RKEDVWEAERVFNEMLQCGVVPDLISFSSIIGVFSRNGELGRALAYFEKMKGV 240
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD V YT I YCR D EM E+ C V+T +++ L + K + +A
Sbjct: 241 GLVPDTVIYTILINGYCRNNDVSGALKVRNEMVERSCVMDVVTYNTLLNGLCRGKMLDDA 300
Query: 302 LKVYEKMKSDDCLTDTSFYSSLI 324
+++++M D ++LI
Sbjct: 301 DELFKEMVERGVFPDFYTLTTLI 323
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 79/221 (35%), Gaps = 34/221 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYV-------SLAAMSTV 172
TYN ++ L + K EL KE+ E L +GY +L+ T+
Sbjct: 283 TYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETI 342
Query: 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQ 232
R + L ++ R H + SL + + LI G+ + A
Sbjct: 343 TLRSEMEKAKELWRDMISREIFPHYISFSILINGFCSLG-LVSESLIKGYLRAGNVSKAN 401
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEH--------------YCREKDFRKVDYTLKEMQEKGC 278
+ M G PD ++Y I + R ++ + L +M +KG
Sbjct: 402 DFLNTMVSEGVPPDCITYNTLINRLLPDLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGI 461
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF 319
P T T V++ + EA +V+++M + D F
Sbjct: 462 NPDKSTYTSVINGYVSKDNMKEAFRVHDEMLQRGFVPDDKF 502
>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 418
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 91/388 (23%), Positives = 155/388 (39%), Gaps = 60/388 (15%)
Query: 51 TQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVE 110
TQ D + +++ES L + I + L+++H+ R + + KV+E
Sbjct: 61 TQRSDIYVFSGLITAYLESGFLRDA--IECYRLTKEHK---------FRVPFDTCRKVLE 109
Query: 111 ---ALKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM---------WEL-- 152
LK F W + GY + +N ++ + K + L W L
Sbjct: 110 HLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRP 169
Query: 153 -VKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF 201
V + L NGY+ L AM + D SVL++ L K + + A ++F
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELF 229
Query: 202 LKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
+ D + + + F LI G CK + D A + K+M SPD ++Y I C++
Sbjct: 230 DEMLDNXLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 289
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
D ++ + EM KG KP IT T ++ K + A K ++M ++ D Y
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAY 349
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
++L IS C +A K+ +++ KP+ T+ + C
Sbjct: 350 TAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQEST 408
K + G L++EM G +P T
Sbjct: 394 KGDVWTGS---KLLKEMQRDGYMPSVVT 418
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 129/314 (41%), Gaps = 44/314 (14%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W +E L GY + ++LM + VK
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWGFYEE--SLECGYPA-----------SLYFFNILMHSFVK 148
Query: 191 RNSVAHAYKVFLKFKDCI---SLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+ A VF D I SL + F+ L++G+ K D + M G P
Sbjct: 149 EGEIRLAQSVF----DAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQP 204
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D +Y+ I C+E + EM + P+ +T T ++ K ++ A+++Y
Sbjct: 205 DVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDGHCKNGRVDLAMEIY 264
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVR 346
++M S D Y++LI+ L K + Y T+I C
Sbjct: 265 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKE 324
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
+ A K R+++ +++ + D + + C + R D ++REMLS G+ P+
Sbjct: 325 GDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLKPEI 381
Query: 407 STHKMLAEELEKKS 420
T+ M+ E KK
Sbjct: 382 GTYTMIINEFCKKG 395
>gi|225461528|ref|XP_002282646.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15200-like [Vitis vinifera]
Length = 546
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 113/286 (39%), Gaps = 43/286 (15%)
Query: 117 FTWAK---TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM 173
F WA ++GY +N +++ LG+ ++F M +L E+ + G V+ ++
Sbjct: 139 FNWASRCGIESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSK-RKGLVNERTFGVLL 197
Query: 174 RR-----------------------LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL 210
R LD A L+ +L + V A +F K+
Sbjct: 198 NRYAAAHKTEEAVKIFNKRKGLGFELDLIAFQTLLMSLCRYKHVEMAEFLFHSKKNEFPP 257
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
+ +V+++GWC A++ ++ PD +Y FI +
Sbjct: 258 DIKSMNVILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLF 317
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
+ M EKGC P V C ++ AL K+I EAL+V +M DC D + Y+SLI L K
Sbjct: 318 QAMWEKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKI 377
Query: 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
RF +L +E+ C P+ T+ LK
Sbjct: 378 QRF----------------EKVYELLDDMEQKGCLPNARTYGYLLK 407
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 119/271 (43%), Gaps = 41/271 (15%)
Query: 153 VKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVFL 202
+K ++ + NG+ L ++ R + D + +++L K ++ A K+F
Sbjct: 259 IKSMNVILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQ 318
Query: 203 KF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
K C + I + +I C ++ A + ++EM + PD +Y I+H C+
Sbjct: 319 AMWEKGC-NPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKI 377
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
+ F KV L +M++KGC P+ T ++ + +K +++ L E+M+ + C ++ Y
Sbjct: 378 QRFEKVYELLDDMEQKGCLPNARTYGYLLKSTKKPEEVPGIL---ERMERNGCRMNSDCY 434
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE---DSCKPDCETHARSLKM 377
+ ++ + + G LKLR ++E + PD T+ +
Sbjct: 435 NLILKLY-------------------MDWGYELKLRSTLDEMERNGMGPDQRTYTIMIHG 475
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
K RM D L+ ++M G+VP+ T
Sbjct: 476 LYDKGRMDD---ALSYFKQMTLMGMVPEPRT 503
>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 395
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 113/269 (42%), Gaps = 33/269 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
GY T TYN ++ L KSK +DE N Y L MS L
Sbjct: 134 GYKSTYVTYNTIISGLVKSKM----------LDEAINLYYQL--MSEGFSPTPC-TYGPL 180
Query: 185 MDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D L+K ++ A +F + +C + I+++L++G+ ++ + + M + G
Sbjct: 181 LDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGM 240
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+PD SYT I+ C + K++ + G +P +IT +++H L K+ ++ EAL
Sbjct: 241 NPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALS 300
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSAC 344
+Y M+ + Y+SLI L KA + YN +I
Sbjct: 301 LYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYS 360
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHAR 373
V NA ++ C+P+ T+ +
Sbjct: 361 VSGSPENAFAAYGRMIVGGCRPNSSTYMQ 389
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 115/278 (41%), Gaps = 29/278 (10%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKA 234
LD +S ++ L K A+++ KF++ +SL + ++ LI G D A++
Sbjct: 32 LDDLFLSPIIRHLCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEEL 91
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
EM + G PD +Y ++ + + +EM KG K + +T ++ L K
Sbjct: 92 FSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVK 151
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LI 335
+K + EA+ +Y ++ S+ Y L+ L K I
Sbjct: 152 SKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAI 211
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
YN +++ + + +L + + E PD +++ + C R+ DG L+ +
Sbjct: 212 YNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDG---LSYFK 268
Query: 396 EMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
++ G+ P T+ +L L K R++E L+
Sbjct: 269 QLTDMGLEPDLITYNLLIHGLGKSG------RLEEALS 300
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 103/260 (39%), Gaps = 31/260 (11%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVL-----IHGWCKTRKSDYAQKAMKEM 238
LM+ ++KR+ + ++F + I+ S + D L I CK +++ A + +K+
Sbjct: 5 LMEGILKRDGTEKS----IEFAENIASSGLLLDDLFLSPIIRHLCKHKEALAAHELVKKF 60
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
G S SY I E + EM+ GC P T +++ A+ K+ +I
Sbjct: 61 ENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRI 120
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK 358
+ LK+ E+M + Y S ++ YNT+IS A+ L +
Sbjct: 121 EDMLKIQEEMHNKG-------YKS---------TYVTYNTIISGLVKSKMLDEAINLYYQ 164
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
+ + P T+ L ++D L EML G P + + +L L
Sbjct: 165 LMSEGFSPTPCTYGPLLDGLLKDGNIEDAEA---LFDEMLECGCEPNCAIYNIL---LNG 218
Query: 419 KSLGNAKERIDELLTHATEQ 438
+ E++ EL EQ
Sbjct: 219 YRIAGDTEKVCELFESMVEQ 238
>gi|15239488|ref|NP_200904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75262710|sp|Q9FME4.1|PP438_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g60960, mitochondrial; Flags: Precursor
gi|10177319|dbj|BAB10645.1| unnamed protein product [Arabidopsis thaliana]
gi|332010020|gb|AED97403.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 521
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 89/415 (21%), Positives = 173/415 (41%), Gaps = 66/415 (15%)
Query: 68 ESLKLNEQSRISSHALSEDHETDVDKVSEILRKRY----PSPDKVVEALK--------CF 115
ESL NE + S L+ + + + +S+ + P+PD +++ L
Sbjct: 68 ESLDSNEIALSFSKELTGNPDAESQTISQRFNLSFSHITPNPDLILQTLNLSPEAGRAAL 127
Query: 116 CFT-WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR 174
F W + + + HT ET + V+ G+ K F M E++ + ++ G +A+ ++R
Sbjct: 128 GFNEWLDSNSNFSHTDETVSFFVDYFGRRKDFKGMLEIISKYKGIAGGKTLESAIDRLVR 187
Query: 175 --------------------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
+ D ++++++ L ++ + A K+ + I I
Sbjct: 188 AGRPKQVTDFFEKMENDYGLKRDKESLTLVVKKLCEKGHASIAEKMVKNTANEIFPDENI 247
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE---HYCREKD-FR---KVD 267
D+LI GWC K D A + EM + GF +Y ++ CR+KD F+ +V+
Sbjct: 248 CDLLISGWCIAEKLDEATRLAGEMSRGGFEIGTKAYNMMLDCVCKLCRKKDPFKLQPEVE 307
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
L EM+ +G + T ++++ L K ++ EA+ ++ +M C D Y LI L
Sbjct: 308 KVLLEMEFRGVPRNTETFNVLINNLCKIRRTEEAMTLFGRMGEWGCQPDAETYLVLIRSL 367
Query: 328 SKAVRFLIYNTMISSA---------------------CVRSEEGNALKLRQKIEEDSCKP 366
+A R + MI C +A+ + + ++ + CKP
Sbjct: 368 YQAARIGEGDEMIDKMKSAGYGELLNKKEYYGFLKILCGIERLEHAMSVFKSMKANGCKP 427
Query: 367 DCETHARSL-KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+T+ + KMC + + + L +E KGI +++ ++KK+
Sbjct: 428 GIKTYDLLMGKMCANNQLTRAN----GLYKEAAKKGIAVSPKEYRVDPRFMKKKT 478
>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
Japonica Group]
gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
Length = 551
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 66/108 (61%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
V++ G+CK+ + +A++ + EM +HG + + Y ++ Y REKD +V LK M+ +
Sbjct: 148 VVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENE 207
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G +P+V T TI++ L A+ I + V+E+MKS + D FYSS+I
Sbjct: 208 GIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVI 255
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 105/249 (42%), Gaps = 20/249 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKV-FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ ++D ++N V A ++ + K I L ++ L G + + D A+ ++ M +
Sbjct: 322 NTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIE 381
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ VSYT I +C E D + +EM G +PS++T ++M K I E
Sbjct: 382 KGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIRE 441
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A + +M+ + D Y++L+ CV + AL+L ++++
Sbjct: 442 AERFKNEMEKKGLVPDIYSYAALVH----------------GHCVNGKVDVALRLFEEMK 485
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ KP+ + + + R ++ L ML G+ P ++ + L L
Sbjct: 486 QRGSKPNLVAYTALISGLAKEGRSEE---AFQLYDNMLGDGLTPDDALYSALVGSLHTDK 542
Query: 421 LGNAKERID 429
N K R +
Sbjct: 543 KQNVKPRTN 551
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 109/251 (43%), Gaps = 23/251 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
SV++D K VAHA ++ + + + +++ ++ L+ + + + D + +K M
Sbjct: 147 SVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMEN 206
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P +YT ++ +D KV+ +EM+ K V + V++A +A +
Sbjct: 207 EGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRR 266
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIYNTMIS 341
A +V+++ + + Y +LI K + +++NTMI
Sbjct: 267 ASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMID 326
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C ++ AL+++ +E+ + D T+ + C +R NL+R M+ KG
Sbjct: 327 GYCRKNMVDKALEIKMIMEKMGIELDVYTYN---TLACGLRRANRMDEAKNLLRIMIEKG 383
Query: 402 IVPQESTHKML 412
+ P ++ L
Sbjct: 384 VRPNHVSYTTL 394
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 23/259 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
S +++ + +V A +VF + + I + + LI+G+CK + + A+ + +M
Sbjct: 252 SSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQV 311
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G + + + I+ YCR+ K M++ G + V T + L +A ++ E
Sbjct: 312 RGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDE 371
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFI------LSKAVR-------------FLIYNTMIS 341
A + M + Y++LI I + +A R + YN M+
Sbjct: 372 AKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMD 431
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
+ A + + ++E+ PD ++A + C ++ + L L EM +G
Sbjct: 432 GYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVD---VALRLFEEMKQRG 488
Query: 402 IVPQESTHKMLAEELEKKS 420
P + L L K+
Sbjct: 489 SKPNLVAYTALISGLAKEG 507
>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
Length = 913
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 101/211 (47%), Gaps = 19/211 (9%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
++L+SQ ++ +I+ CK + D A ++EM G +PD SY I H C + + +
Sbjct: 412 LTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAE 471
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ + + E+G + IT ++HAL + + +A+++ ++M C D
Sbjct: 472 HMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDV---------- 521
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+ YN +I + C +L L +++ E KP+ ++ + C ++R++D
Sbjct: 522 ------VSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRD- 574
Query: 388 MLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
L L ++ML++G+ P T+ L L K
Sbjct: 575 --ALELSKQMLNQGLAPDIVTYNTLINGLCK 603
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 108/260 (41%), Gaps = 20/260 (7%)
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
R+ +V++ L + + A A ++ + +D + ++ F V C+ ++D A ++
Sbjct: 140 RSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLR 199
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M +HG PD V Y I C + + L EM GC V T V+ +
Sbjct: 200 GMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLG 259
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA---------------VRFLIYNTMIS 341
++ EA ++ ++M + C+ Y L+ L + + +++NT+I
Sbjct: 260 RVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIG 319
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
+ A +L + + C+PD T++ + C R+ + L+REM KG
Sbjct: 320 GCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGS---AVRLLREMEKKG 376
Query: 402 IVPQESTHKMLAEELEKKSL 421
P T+ ++ K +
Sbjct: 377 FAPNVVTYTIVLHSFCKNGM 396
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 16/178 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +IH + + A + KEM HG S D VSY I+ C++ + + L+EM
Sbjct: 489 YNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMA 548
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
EKG KP+ ++ I++ L K +++ +AL++ ++M + D +
Sbjct: 549 EKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPD----------------IV 592
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
YNT+I+ C AL L +K+ ++ PD T+ + C + + D ++LN
Sbjct: 593 TYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLN 650
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 98/221 (44%), Gaps = 18/221 (8%)
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
L+ +F+ +I G K A + + M G PD +Y+ + C+
Sbjct: 309 LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRL 368
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
L+EM++KG P+V+T TIV+H+ K + + E+M + ++ Y+ +I+ L K
Sbjct: 369 LREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCK 428
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG-M 388
R A+ L Q++ C PD ++ + C+ ++M++
Sbjct: 429 DGRM----------------DEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEH 472
Query: 389 LVLNLMRE-MLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
+ NL+ E +++ GI H +L + + ++ AKE I
Sbjct: 473 MFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMI 513
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMKE 237
+ N++ HA +++D + L+ ++ ++ LI CK D + ++E
Sbjct: 487 ITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE 546
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M + G P+ VSY I C+E+ R K+M +G P ++T +++ L K
Sbjct: 547 MAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGW 606
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLI 324
++ AL + EK+ +++ D Y+ LI
Sbjct: 607 MHAALNLLEKLHNENVHPDIITYNILI 633
>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 112/267 (41%), Gaps = 33/267 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
GY T TYN ++ L KSK +DE N Y L MS L
Sbjct: 831 GYKSTYVTYNTIISGLVKSKM----------LDEAINLYYQL--MSEGFSPTPC-TYGPL 877
Query: 185 MDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D L+K ++ A +F + +C + I+++L++G+ ++ + + M + G
Sbjct: 878 LDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGM 937
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+PD SYT I+ C + K++ + G +P +IT +++H L K+ ++ EAL
Sbjct: 938 NPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALS 997
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSAC 344
+Y M+ + Y+SLI L KA + YN +I
Sbjct: 998 LYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYS 1057
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETH 371
V NA ++ C+P+ T+
Sbjct: 1058 VSGSPENAFAAYGRMIVGGCRPNSSTY 1084
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 25/246 (10%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
I L++ ++ LI+ K+ A K M G P +Y+ + + + +D V
Sbjct: 167 IVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVV 226
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
L EM+ +G +P+V + TI + L +A ++ EA ++ KM+ + C D + LI IL
Sbjct: 227 GLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQIL 286
Query: 328 SKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
A R + Y T++ + + ++ ++ D +
Sbjct: 287 CDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNV 346
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
++ ++ C R+ + L++ EM KGI+PQ+ ++ L K N R
Sbjct: 347 VSYTAAVDALCQVGRVDE---ALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFN---RA 400
Query: 429 DELLTH 434
EL H
Sbjct: 401 LELFNH 406
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 115/278 (41%), Gaps = 29/278 (10%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKA 234
LD +S ++ L K A+++ KF++ +SL + ++ LI G D A++
Sbjct: 729 LDDLFLSPIIRHLCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEEL 788
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
EM + G PD +Y ++ + + +EM KG K + +T ++ L K
Sbjct: 789 FSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVK 848
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LI 335
+K + EA+ +Y ++ S+ Y L+ L K I
Sbjct: 849 SKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAI 908
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
YN +++ + + +L + + E PD +++ + C R+ DG L+ +
Sbjct: 909 YNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDG---LSYFK 965
Query: 396 EMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
++ G+ P T+ +L L K R++E L+
Sbjct: 966 QLTDMGLEPDLITYNLLIHGLGKSG------RLEEALS 997
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 22/243 (9%)
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D L + V A VF + K + Q ++ LI G+ K + + A + M HG
Sbjct: 353 VDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGP 412
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+P+G ++ FI ++ + + K + M+ KG P V+ V++ L K ++ A +
Sbjct: 413 TPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKR 472
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS 363
V+ ++K+ D Y+ +I SKA S A+K+ ++ E+
Sbjct: 473 VFHELKAMGISPDNITYTMMIKCCSKA----------------SNADEAMKIFAEMIENR 516
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGN 423
C PD + M R + + ++EM + P + T+ L L ++ G
Sbjct: 517 CAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEM---NLEPTDCTYNTLLAGLGRE--GK 571
Query: 424 AKE 426
KE
Sbjct: 572 VKE 574
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 86/203 (42%), Gaps = 19/203 (9%)
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+ +++G KT + A++ E+ G SPD ++YT I+ + + + EM E
Sbjct: 455 NAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIE 514
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR--- 332
C P V+ ++ L KA + EA K++ ++K + Y++L+ L + +
Sbjct: 515 NRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKE 574
Query: 333 ----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+ YNT++ C E AL + + + C PD ++ +
Sbjct: 575 VMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMY 634
Query: 377 MCCHKKRMKDGMLVLNLMREMLS 399
+ R+ + + M+++L+
Sbjct: 635 GLVKEDRLDEAFWMFCQMKKVLA 657
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D AM+ L+D L K A+K+F + K+ + + ++ L+ G + K + +
Sbjct: 520 DVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLL 579
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ M + F P+ ++Y ++ C+ + L M GC P + + VM+ L K
Sbjct: 580 EGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKE 639
Query: 296 KQIYEALKVYEKMK 309
++ EA ++ +MK
Sbjct: 640 DRLDEAFWMFCQMK 653
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 109/269 (40%), Gaps = 31/269 (11%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVL-----IHGWCKTRKSD 229
++D ++ LM+ ++KR+ + ++F + I+ S + D L I CK +++
Sbjct: 693 KVDRSSVHSLMEGILKRDGTEKS----IEFAENIASSGLLLDDLFLSPIIRHLCKHKEAL 748
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
A + +K+ G S SY I E + EM+ GC P T +++
Sbjct: 749 AAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLIL 808
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE 349
A+ K+ +I + LK+ E+M + Y S ++ YNT+IS
Sbjct: 809 DAMGKSMRIEDMLKIQEEMHNKG-------YKS---------TYVTYNTIISGLVKSKML 852
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
A+ L ++ + P T+ L ++D + + EML G P + +
Sbjct: 853 DEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFD---EMLECGCEPNCAIY 909
Query: 410 KMLAEELEKKSLGNAKERIDELLTHATEQ 438
+L L + E++ EL EQ
Sbjct: 910 NIL---LNGYRIAGDTEKVCELFESMVEQ 935
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 25/149 (16%)
Query: 260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF 319
E R L M+E G + T +++ L K+ EA+ VY+ M +D +
Sbjct: 149 EGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRT 208
Query: 320 YSSLIFILSK-----------------AVRFLIYNTMISSACVR--SEEGN---ALKLRQ 357
YS L+ K VR +Y+ I C+R + G A ++ +
Sbjct: 209 YSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTI---CIRVLGQAGRLEEAYRILR 265
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKD 386
K+EE+ CKPD T+ +++ C R+ D
Sbjct: 266 KMEEEGCKPDVVTNTVLIQILCDAGRLAD 294
>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 418
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 128/310 (41%), Gaps = 36/310 (11%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W +E L GY + ++LM + VK
Sbjct: 102 DTCRKVIEHLMKLKYFKLVWGFYEE--SLECGYPA-----------SLYFFNILMHSFVK 148
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A VF K + S F+ L++G+ K D + M G PD +
Sbjct: 149 EGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYT 208
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+ I C+E + EM + G P+ +T T ++ K ++ A+++Y +M
Sbjct: 209 YSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQML 268
Query: 310 SDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEG 350
S D Y++LI+ L K + Y T+I +C +
Sbjct: 269 SQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLE 328
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A + R+++ +++ + D + + C + R D ++REMLS G+ P+ T+
Sbjct: 329 TAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAE---KMLREMLSVGLKPEIGTYT 385
Query: 411 MLAEELEKKS 420
M+ E KK
Sbjct: 386 MIINEFCKKG 395
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 134/341 (39%), Gaps = 49/341 (14%)
Query: 98 LRKRYPSPDKVVE---ALKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM- 149
R + + KV+E LK F W + GY + +N ++ + K + L
Sbjct: 97 FRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQ 156
Query: 150 --------WEL---VKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTL 188
W L V + L NGY+ L AM + D SVL++ L
Sbjct: 157 SVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGL 216
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
K + + A ++F + D + + + F LI G CK + D A + +M SPD
Sbjct: 217 CKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDL 276
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
++Y I C++ D ++ EM KG KP IT T ++ K + A + ++
Sbjct: 277 ITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKR 336
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
M ++ D Y++L IS C +A K+ +++ KP+
Sbjct: 337 MIKENIRLDXVAYTAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPE 380
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
T+ + C K + G L++EM G VP T
Sbjct: 381 IGTYTMIINEFCKKGDVWTGS---KLLKEMQRDGYVPSVVT 418
>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 586
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/371 (19%), Positives = 136/371 (36%), Gaps = 80/371 (21%)
Query: 126 YMHTPET---YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+MH P + +N ++ ++ K+K++ ++ L ++D D ++
Sbjct: 62 HMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFG-------------IPPDVYTLN 108
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ----IFDVLIHGWCKTRKSDYAQKAMKEM 238
+L+++ N + A+ V K + L Q F LI G C K A +M
Sbjct: 109 ILINSFCHLNRLGFAFSVLAKI---LKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKM 165
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
GF P+ V+Y I C+ + L+ M++ C+P V+ T ++ +L K +Q+
Sbjct: 166 IGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 225
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIF----------------------ILSKAVRF--- 333
EA ++ KM D Y+SLI I+ V F
Sbjct: 226 TEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTV 285
Query: 334 -----------------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
+ YN ++ C++SE A+K+ + +
Sbjct: 286 VDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGY 345
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNA 424
P+ ++ + C +RM L EM K ++P T+ L L +A
Sbjct: 346 APNVISYNTLINGYCKIQRMDKATY---LFEEMCQKELIPNTVTYNTLMHXCHVGRLQDA 402
Query: 425 KERIDELLTHA 435
E++ H
Sbjct: 403 IALFHEMVAHG 413
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 130/319 (40%), Gaps = 47/319 (14%)
Query: 128 HTPET--YNAMVEALGKSKKFGLMWELV-KEIDE-----------LSNGYVSLAAMSTVM 173
H P+T + ++ L K G L K I E L NG + + +
Sbjct: 135 HQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAI 194
Query: 174 RRL----------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV--LIHG 221
R L D + ++D+L K V A+ +F K +S IF LIH
Sbjct: 195 RLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVG-QGISPDIFTYTSLIHS 253
Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
C + + + +M PD V ++ ++ C+E + + M +G +P+
Sbjct: 254 LCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPN 313
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMIS 341
V+T +M ++ EA+KV++ M + A + YNT+I+
Sbjct: 314 VVTYNALMDGHCLQSEMDEAVKVFDTMVHN----------------GYAPNVISYNTLIN 357
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C A L +++ + P+ T+ +L CH R++D + L EM++ G
Sbjct: 358 GYCKIQRMDKATYLFEEMCQKELIPNTVTY-NTLMHXCHVGRLQDA---IALFHEMVAHG 413
Query: 402 IVPQESTHKMLAEELEKKS 420
+P +T+++L + L KKS
Sbjct: 414 QIPDLATYRILLDYLCKKS 432
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 104/246 (42%), Gaps = 21/246 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D S ++D L K + A+ V + + + ++ L+ G C + D A K
Sbjct: 278 DVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVF 337
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M +G++P+ +SY I YC+ + K Y +EM +K P+ +T +MH
Sbjct: 338 DTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVG 397
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ + +A+ ++ +M + + D + Y L+ L C +S A+ L
Sbjct: 398 R-LQDAIALFHEMVAHGQIPDLATYRILLDYL----------------CKKSHLDEAMAL 440
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ IE + PD + + + C ++ ++ + SKG+ P T+ ++
Sbjct: 441 LKTIEGSNMDPDIQIYTIVIDGMCRAGELEAAR---DIFSNLSSKGLRPNVRTYTIMING 497
Query: 416 LEKKSL 421
L ++ L
Sbjct: 498 LCRRGL 503
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 90/241 (37%), Gaps = 28/241 (11%)
Query: 153 VKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL-- 210
V + L NGY + M + L+ V N++ H V + +D I+L
Sbjct: 349 VISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVG-RLQDAIALFH 407
Query: 211 ----SSQIFD-----VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
QI D +L+ CK D A +K + PD YT I+ CR
Sbjct: 408 EMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAG 467
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
+ + KG +P+V T TI+++ L + + EA K++ +M + C D
Sbjct: 468 ELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGC--- 524
Query: 322 SLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
YNT+ E A++L Q++ D T ++M C
Sbjct: 525 -------------TYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDD 571
Query: 382 K 382
K
Sbjct: 572 K 572
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 80/207 (38%), Gaps = 22/207 (10%)
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A + M P V + + + K + V +M G P V T I+
Sbjct: 51 DDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNIL 110
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAV---- 331
+++ ++ A V K+ DT+ +++LI + K +
Sbjct: 111 INSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGF 170
Query: 332 --RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ Y T+I+ C A++L + +E+ +C+PD + + C +++ +
Sbjct: 171 QPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEA-- 228
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEEL 416
NL +M+ +GI P T+ L L
Sbjct: 229 -FNLFSKMVGQGISPDIFTYTSLIHSL 254
>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Glycine max]
Length = 729
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/361 (22%), Positives = 139/361 (38%), Gaps = 83/361 (22%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL---------- 166
F W + Q G+ HTPE+Y M+E LG+ + + + I++ S G V L
Sbjct: 98 FKWTQ-QKGFSHTPESYFIMLEILGRERNLNVARNFLFSIEKHSKGTVKLEDRFFNSLIR 156
Query: 167 ---------------AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211
M ++ + LM L+KR A +V+ + +S
Sbjct: 157 SYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEVYDEMLGTYGVS 216
Query: 212 SQ--IFDVLIHGWCKTRKSDYAQKAMKEM--FQ--------------------------- 240
++VLI G+CK D + +EM F
Sbjct: 217 PDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKVRIARNL 276
Query: 241 --------HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
G +P+ V+YT I YC +++ + L+EM +G KP++IT ++ L
Sbjct: 277 VNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKGL 336
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA 352
+A ++ + V E+MKSD + +F +NT+I C A
Sbjct: 337 CEAHKLDKMKDVLERMKSDGGFSPDTF---------------TFNTIIHLHCCAGNLDEA 381
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
LK+ + +++ D +++ ++ C K D + L E+ K I+ + K L
Sbjct: 382 LKVFESMKKFRIPADSASYSTLIRSLCQK---GDYDMAEQLFDELFEKEILLSKFGSKPL 438
Query: 413 A 413
A
Sbjct: 439 A 439
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 23/202 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +V+ L ++ K M ++++ + S+G S DT + ++
Sbjct: 328 TYNTLVKGLCEAHKLDKMKDVLERMK--SDGGFSP----------DTFTFNTIIHLHCCA 375
Query: 192 NSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ-------HGF 243
++ A KVF K I S + LI C+ D A++ E+F+ G
Sbjct: 376 GNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGS 435
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK-PSVITCTIVMHALEKAKQIYEAL 302
P SY E C +K + ++++ ++G + P T I+ H E A + L
Sbjct: 436 KPLAASYNPIFESLCEHGKTKKAERVIRQLMKRGTQDPQSYTTVIMGHCKEGAYESGYEL 495
Query: 303 KVYEKMKSDDCLTDTSFYSSLI 324
++ M D L D Y LI
Sbjct: 496 LMW--MLRRDFLPDIEIYDYLI 515
>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
Length = 551
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 66/108 (61%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
V++ G+CK+ + +A++ + EM +HG + + Y ++ Y REKD +V LK M+ +
Sbjct: 148 VVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENE 207
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G +P+V T TI++ L A+ I + V+E+MKS + D FYSS+I
Sbjct: 208 GIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVI 255
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 106/249 (42%), Gaps = 20/249 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKV-FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ ++D ++N V A ++ + K I L ++ L G + + D A+ ++ M +
Sbjct: 322 NTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIE 381
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ VSYT I +C E D + +EM G +PS++T ++M K I E
Sbjct: 382 KGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIRE 441
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A + ++M+ + D Y++L+ CV + AL+L ++++
Sbjct: 442 AERFKKEMEKKGLVPDIYSYAALVH----------------GHCVNGKVDVALRLFEEMK 485
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ KP+ + + + R ++ L ML G+ P ++ + L L
Sbjct: 486 QRGSKPNLVAYTALISGLAKEGRSEE---AFQLYDNMLGDGLTPDDALYSALVGSLHTDK 542
Query: 421 LGNAKERID 429
N K R +
Sbjct: 543 KQNVKPRTN 551
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 109/251 (43%), Gaps = 23/251 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
SV++D K VAHA ++ + + + +++ ++ L+ + + + D + +K M
Sbjct: 147 SVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMEN 206
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P +YT ++ +D KV+ +EM+ K V + V++A +A +
Sbjct: 207 EGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRR 266
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIYNTMIS 341
A +V+++ + + Y +LI K + +++NTMI
Sbjct: 267 ASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMID 326
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C ++ AL+++ +E+ + D T+ + C +R NL+R M+ KG
Sbjct: 327 GYCRKNMVDKALEIKMIMEKMGIELDVYTYN---TLACGLRRANRMDEAKNLLRIMIEKG 383
Query: 402 IVPQESTHKML 412
+ P ++ L
Sbjct: 384 VRPNHVSYTTL 394
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 105/259 (40%), Gaps = 23/259 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
S +++ + +V A +VF + + I + + LI+G+CK + + A+ + +M
Sbjct: 252 SSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQV 311
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G + + + I+ YCR+ K M++ G + V T + L +A ++ E
Sbjct: 312 RGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDE 371
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFI------LSKAVR-------------FLIYNTMIS 341
A + M + Y++LI I + +A R + YN M+
Sbjct: 372 AKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMD 431
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
+ A + ++++E+ PD ++A + C ++ + L L EM +G
Sbjct: 432 GYIKKGSIREAERFKKEMEKKGLVPDIYSYAALVHGHCVNGKVD---VALRLFEEMKQRG 488
Query: 402 IVPQESTHKMLAEELEKKS 420
P + L L K+
Sbjct: 489 SKPNLVAYTALISGLAKEG 507
>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
Length = 738
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 22/221 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I G+CK A + +K+ GF PD V+Y I C E D + E Q
Sbjct: 296 YNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQ 355
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
KG KP ++ ++ L I AL+V +M + C D Y+ +I
Sbjct: 356 AKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNIS 415
Query: 325 ---FILSKAVR------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+++ A+ +NT+I C R + +AL+L +++ E PD T+ L
Sbjct: 416 DATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVL 475
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C ++ + V +EM+ KG P T+ +L E
Sbjct: 476 NGLCKAGKVNE---VNETFQEMILKGCHPNPITYNILIENF 513
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 19/200 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ LI G+CK K D A + ++ M+++G +PD ++Y + C+ +V+ T +EM
Sbjct: 436 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 495
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
KGC P+ IT I++ ++ ++ EA KV KM + D AV F
Sbjct: 496 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPD-------------AVSF- 541
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
NT+I C + A L QK+EE +T + K M + +
Sbjct: 542 --NTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMH---MAEKIF 596
Query: 395 REMLSKGIVPQESTHKMLAE 414
EMLSKG T+++L +
Sbjct: 597 DEMLSKGHRADSYTYRVLID 616
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 19/205 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G CK A ++ M G PD +Y I+ YC+ ++ LK+
Sbjct: 261 YNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAV 320
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
KG P +T +++ L + AL+++ + ++ D +
Sbjct: 321 FKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPD----------------IV 364
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+YN+++ C++ +AL++ ++ E+ C PD +T+ + C + D +V+N
Sbjct: 365 VYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMN-- 422
Query: 395 REMLSKGIVPQESTHKMLAEELEKK 419
+ + KG +P T L + K+
Sbjct: 423 -DAIMKGYLPDVFTFNTLIDGYCKR 446
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 14/181 (7%)
Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL 188
P TYN ++E +S K M E K I ++S + A+S + L+
Sbjct: 502 NPITYNILIENFCRSNK---MEEASKVIVKMSQEGLHPDAVS----------FNTLIYGF 548
Query: 189 VKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+ + AY +F K ++ S ++ F+ LI + A+K EM G D
Sbjct: 549 CRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADS 608
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+Y I+ C+ + + L EM +KG PS+ T V+++L ++++A+ +
Sbjct: 609 YTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHI 668
Query: 308 M 308
M
Sbjct: 669 M 669
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/230 (17%), Positives = 90/230 (39%), Gaps = 27/230 (11%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ ++ ++ D A K M G SPD ++T + +C L
Sbjct: 87 AAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLL 146
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK- 329
+ + +G +V CT+V L ++A +++++M + + ++ ++ L K
Sbjct: 147 RALPHRG---AVAYCTVVC-GLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKR 202
Query: 330 ------------------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
++ YN I C A++L + + PD T+
Sbjct: 203 GDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTY 261
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
++ C K ++ M + +R M+++G +P + T+ + + K S+
Sbjct: 262 NTLIRGLCKKSMPQEAM---HYLRRMMNQGCLPDDFTYNTIIDGYCKISM 308
>gi|255585033|ref|XP_002533225.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526957|gb|EEF29157.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 605
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 108/291 (37%), Gaps = 66/291 (22%)
Query: 157 DELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAH----------AYKVFLK--- 203
+ LSNGY +S R +D + L V N++ H AYK+
Sbjct: 262 NTLSNGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASK 321
Query: 204 ---FKDCISLSSQI--------------------------FDVLIHGWCKTRKSDYAQKA 234
F D +S + I + +I G C++ K+D +
Sbjct: 322 RGYFVDEVSYGTLIMGYFKVGKSXXWDEMKEKEIIPSIITYGTMIGGLCRSGKTDQSIDK 381
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
E+ + G PD +Y I YCRE K + +M +K KP + TC I++ L
Sbjct: 382 CNELLESGLVPDQTTYNTIILGYCREGQVDKAFHFRNKMVKKSFKPDLFTCNILVRGLCT 441
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
+ +ALK+++ S KA+ + +NT+IS C A
Sbjct: 442 EGMLDKALKLFKTWISK----------------GKAIDAVTFNTIISGLCEEGRFEEAFD 485
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
L ++EE PDC TH L RMK+ E GIV Q
Sbjct: 486 LLAEMEEKKLGPDCYTHNAILSALADAGRMKEA--------EEFMSGIVEQ 528
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 31/270 (11%)
Query: 173 MRRLDTR----AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI----FDVLIHGWCK 224
M+RL + ++ L+ LV+ S Y F D I L ++ F++LI G C
Sbjct: 1 MKRLHLKPNLLTLNTLIKALVRYPSKPSVYLSKAIFSDVIKLGVEVNTNTFNILICGCCI 60
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
K A + +M PD VSY ++ C++ + L +M+ G P+ T
Sbjct: 61 ENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLFPNRNT 120
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC 344
I++ K + EA +V + M ++ L D Y+ T+I C
Sbjct: 121 FNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYT----------------TLIGGLC 164
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ A +LR ++E P T+ + C G L+ EM KG+ P
Sbjct: 165 KDGKIDEAFRLRDEMENLKLLPHVVTYNMLINGCFECSSSLKG---FELIDEMEGKGVKP 221
Query: 405 QESTHKML----AEELEKKSLGNAKERIDE 430
T+ ++ +E + + GN +++E
Sbjct: 222 NAVTYNVVVKWYVKEGKMDNAGNELRKMEE 251
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 18/217 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++V++ + K K D A +++M + GFSPD V++ YC+ + + EM
Sbjct: 226 YNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLSNGYCKAGRLSEAFRMMDEMS 285
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---FILSKAV 331
KG K + +T ++H L +++ +A K+ D Y +LI F + K+
Sbjct: 286 RKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKVGKSX 345
Query: 332 RF------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC 379
+ + Y TMI C + ++ ++ E PD T+ + C
Sbjct: 346 XWDEMKEKEIIPSIITYGTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGYC 405
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ ++ + +M+ K P T +L L
Sbjct: 406 REGQVDK---AFHFRNKMVKKSFKPDLFTCNILVRGL 439
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 84/187 (44%), Gaps = 14/187 (7%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
G T+N +V K L W +KE E+ + + A + V+ D R +
Sbjct: 111 NNGLFPNRNTFNILVSGYCK-----LGW--LKEAAEV----IDIMARNNVLP--DVRTYT 157
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+ L K + A+++ + ++ L + +++LI+G + S + + EM
Sbjct: 158 TLIGGLCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLINGCFECSSSLKGFELIDEMEGK 217
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G P+ V+Y ++ Y +E L++M+E G P +T + + KA ++ EA
Sbjct: 218 GVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLSNGYCKAGRLSEA 277
Query: 302 LKVYEKM 308
++ ++M
Sbjct: 278 FRMMDEM 284
>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
Length = 676
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 21/228 (9%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+D L K A+++FLK S + + V+I G+CK K A+ + M +
Sbjct: 292 LIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQ 351
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G +P+ +YT I+ +CR F + + +M+ +G P++ T ++ K +I +A
Sbjct: 352 GLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQA 411
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
KV S D + Y +I+ C + AL L ++ E
Sbjct: 412 YKVLRMATSQGLCPDK----------------VTYTMLITEHCKQGHITYALDLFNQMAE 455
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
+SC PD +T+ + M C +++M+ L + LS G+VP + T+
Sbjct: 456 NSCHPDIDTYTTIIAMYCQQRQME---QSQQLFDKCLSIGLVPTKQTY 500
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 109/240 (45%), Gaps = 20/240 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+T + L+D + S A+++ K K + + ++ +I G+CK K A K +
Sbjct: 356 NTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVL 415
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ G PD V+YT I +C++ +M E C P + T T ++ +
Sbjct: 416 RMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQ 475
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+Q+ ++ ++++K CL S+ + +K Y +MI+ C + +ALK+
Sbjct: 476 RQMEQSQQLFDK-----CL-------SIGLVPTKQT----YTSMIAGYCRVGKSTSALKV 519
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+++ + C PD T+ + C + R+++ L ML K +VP + T LA E
Sbjct: 520 FERMVQHGCLPDPITYGALISGLCKESRLEEAR---ALFETMLDKHMVPCDVTCVTLAYE 576
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 99/258 (38%), Gaps = 25/258 (9%)
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
VL L +R+ AHA + F + ++ F L+ G C+ + + A + M++ G
Sbjct: 154 VLRVGLRQRHHFAHARQAFDGMG--VRPDARSFRALVLGCCQEGRFEEADALLAAMWREG 211
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
FS D + T + +CR+ FR V M E G P+V+ T + L K + +A
Sbjct: 212 FSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAF 271
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSK------AVRFLI--------------YNTMISS 342
V E+M + ++SLI L K A R + Y MI
Sbjct: 272 HVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGG 331
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C + A L ++ E P+ T+ + C LM +M +G
Sbjct: 332 YCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDR---AFELMNKMKLEGF 388
Query: 403 VPQESTHKMLAEELEKKS 420
+P T+ + KK
Sbjct: 389 LPNIYTYNAIIGGFCKKG 406
>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
Length = 754
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 118/280 (42%), Gaps = 24/280 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + + L+D K V A+ +F K ++ I + + LI+G CKT++ D A++ +
Sbjct: 152 DVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVL 211
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++M G P+ ++Y C I Y +++ KEM P V C M AL K
Sbjct: 212 RQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKH 271
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-------------------IY 336
+I EA +++ M D Y +L+ + A ++
Sbjct: 272 GRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVF 331
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT+I++ +L + + + + PD T + + C R+ D M N
Sbjct: 332 NTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFN---H 388
Query: 397 MLSKGIVPQESTHKMLAE-ELEKKSLGNAKERIDELLTHA 435
M+ G+ P + + L + + ++ L AKE I ++L+
Sbjct: 389 MIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKG 428
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 21/220 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F +I +C+ + D A + M G PD Y+C I+ C +D K + +M
Sbjct: 366 FSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDML 425
Query: 275 EKGCKPSVIT-CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
KG P I T +++ L K ++ E V + LI +
Sbjct: 426 SKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVD----------------LIIHTGQRPNL 469
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ +N+++ C+ A+ L +E +PD T+ + C R+ D L L
Sbjct: 470 ITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDA---LTL 526
Query: 394 MREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELL 432
R+ML K + ++ ++ L + + AKE E++
Sbjct: 527 FRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMI 566
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 110/249 (44%), Gaps = 22/249 (8%)
Query: 166 LAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCK 224
L +M +V D + L+D K + A +F ++L+S +++++HG +
Sbjct: 492 LDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQ 551
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
R++ A++ EM + G + +Y + CR + + L+++ K ++T
Sbjct: 552 ARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILT 611
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC 344
IV+ A+ K + EA +++ + S Y + IL+ Y MI++
Sbjct: 612 FNIVIRAMFKVGRRQEAKELFAAI---------STYGLVPTILT-------YRVMITNLI 655
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM-KDGMLVLNLMREMLSKGIV 403
+A L +E+ SC PD ++M +K + K G N + ++ KGI+
Sbjct: 656 KEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAG----NYLSKIDKKGIL 711
Query: 404 PQESTHKML 412
P+ +T +L
Sbjct: 712 PEATTTSLL 720
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 11/158 (6%)
Query: 178 TRAMSVLMDTLVK-------RNSVAHAYKVFLKFKDCI----SLSSQIFDVLIHGWCKTR 226
R ++ L+ L + R+ A A ++F + C + + +++LI+ + + R
Sbjct: 73 ARGLNELLSALARAPPSAACRDVPALAVELFKRMDRCACPEAAPTIYTYNILINCYRRAR 132
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
+ D + + G PD SY I+ + +E + K +M+E+G P+V+T +
Sbjct: 133 RPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYS 192
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+++ L K K++ +A +V +M + Y+ LI
Sbjct: 193 SLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLI 230
>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 118/264 (44%), Gaps = 23/264 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ +VLM+ L K V A +F + K + ++ F+ LI+G+CK+ + +
Sbjct: 231 NVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLK 290
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M + PD +Y+ I+ C+E ++ KEM ++G P+ +T T +++ K
Sbjct: 291 MVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKN 350
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIY 336
++ AL++Y++M + D Y++LI L K F Y
Sbjct: 351 GRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTY 410
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
T++ +C + AL++R+++ ++ + D + C ++ D L RE
Sbjct: 411 TTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTL---RE 467
Query: 397 MLSKGIVPQESTHKMLAEELEKKS 420
ML G+ P + T+ M+ + KK
Sbjct: 468 MLRAGLKPDDGTYTMVMDGFCKKG 491
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 107/266 (40%), Gaps = 28/266 (10%)
Query: 161 NGYVSLA-----AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQI 214
NG V LA M T + D + L+D L K A K + K +
Sbjct: 350 NGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFT 409
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ L+ G CK + A + KEM + G D V++T I CR+ + TL+EM
Sbjct: 410 YTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREML 469
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
G KP T T+VM K + K+ ++M+SD + +
Sbjct: 470 RAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGV----------------I 513
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN +++ C + + NA L + PD T+ L+ C ++ D N+
Sbjct: 514 TYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLGD---FQNVK 570
Query: 395 REMLSKGIVPQESTHKMLAEELEKKS 420
EM G+V ++++ L EL K S
Sbjct: 571 TEM---GLVSDYASYRSLLHELSKAS 593
>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
Length = 509
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 142/349 (40%), Gaps = 62/349 (17%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE----------------LSNGYVS 165
Q+G + TY +V +L K+ K WE +I E + NGY
Sbjct: 149 VQSGCLPDKVTYTVLVHSLFKACK----WEQGHQIFEEMLSKGHSPELVTYATVVNGYCK 204
Query: 166 LAAMS---TVMRRLDTRA-------MSVLMDTLVKRNSVAHAYKVF----LKFKDCISLS 211
+ ++MRRL S L+D L K + A ++F +D I +
Sbjct: 205 AGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEARELFEMAAGDVQDVIVYT 264
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
S I G CK K D A+ +M + G +PD VSY I C++ + +
Sbjct: 265 S-----FISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMD 319
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM-KSDDCLTDTSFYSSLIFILSKA 330
+ E+ C P V CT+++ L K++++ EA + E+M ++ D YS++I L KA
Sbjct: 320 QAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKA 379
Query: 331 VRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
R + Y +I + C A +L Q++ E C D +
Sbjct: 380 DRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAY 439
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
++ C ++ + + ++ EM +GI P + + + L K+S
Sbjct: 440 NILIRGYCRAAKVDEA---IAMIEEMAGRGIQPNVVSLSTIVDGLCKES 485
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/342 (21%), Positives = 127/342 (37%), Gaps = 43/342 (12%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSK----------------------KFGLMWELVK 154
F WAK + G+ H T N+++E +G +
Sbjct: 4 FQWAKARPGFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFC 63
Query: 155 EIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQ 213
+ +++ L M L+ L + N A ++F + D + +
Sbjct: 64 KAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAF 123
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ V+I CK K D A + M Q G PD V+YT + + + + +EM
Sbjct: 124 LYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEM 183
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR- 332
KG P ++T V++ KA +I +AL + ++K S YS+LI L K R
Sbjct: 184 LSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRH 243
Query: 333 ----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
++Y + IS C + A + K+ E C PD ++ +
Sbjct: 244 DEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIY 303
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
C R+ + LM + + + +P +L + L K
Sbjct: 304 SLCKDNRVSEAK---ELMDQAMERKCMPGVPVCTVLVDGLCK 342
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 24/211 (11%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKE----------------IDELSNGYVSL 166
+ G P +YN ++ +L K + EL+ + +D L
Sbjct: 288 EAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVE 347
Query: 167 AAMSTVMRRLDT--RAMSVL-----MDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVL 218
A + R L+T RA SV+ +D L K + + AY V K + + + + +
Sbjct: 348 EACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAI 407
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
I +CK + D A++ + M + G + D V+Y I YCR + ++EM +G
Sbjct: 408 IDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGI 467
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
+P+V++ + ++ L K ++ EA + EKM
Sbjct: 468 QPNVVSLSTIVDGLCKESRVEEARLLMEKMN 498
>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
Length = 796
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 23/244 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ +++ V AY +FL D I + + ++I G CK + D A+ ++M
Sbjct: 208 NTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMID 267
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ V+YTC I Y +++V LKEM G +P T +++ L K + E
Sbjct: 268 KGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTE 327
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIF------ILSKAVRFL-------------IYNTMIS 341
A K+++ M D S Y ++ LS+ FL I+N +
Sbjct: 328 ARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFC 387
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
+ ++ G A+ + K+ + P+ +A + C R+ D L N +M+++G
Sbjct: 388 AFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFN---QMINEG 444
Query: 402 IVPQ 405
+ P
Sbjct: 445 VAPN 448
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 20/208 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G C K+D A K + M G P+ +Y + YCR+ +EM
Sbjct: 522 YNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEML 581
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
G P V+T ++H L K ++ EA ++Y M + S Y+ I
Sbjct: 582 SNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSG--KQWSIYTYNI---------- 629
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
I N + + CV ALK+ Q + + D T + R +D M NL
Sbjct: 630 ILNGLSKNNCVDE----ALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAM---NLF 682
Query: 395 REMLSKGIVPQESTHKMLAEEL-EKKSL 421
+ + G+VP +T++++AE L E+ SL
Sbjct: 683 ATISANGLVPDVTTYRLIAENLIEEGSL 710
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 105/256 (41%), Gaps = 23/256 (8%)
Query: 202 LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
L + IS + IF+++ + K A +M Q G SP+ V+Y I+ C+
Sbjct: 369 LMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLG 428
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
+ +M +G P+++ T +++ L + +A +++ +M + + F++
Sbjct: 429 RVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFN 488
Query: 322 SLIFILS------KAVRF-------------LIYNTMISSACVRSEEGNALKLRQKIEED 362
+++ L KA R + YN +I C+ + A KL +
Sbjct: 489 TIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSV 548
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK-KSL 421
KP+ T+ L C R+ D V +EMLS GI P T+ + L K +
Sbjct: 549 GLKPNECTYNTLLHGYCRDGRIDDAYSVF---QEMLSNGITPVVVTYNTILHGLFKTRRF 605
Query: 422 GNAKERIDELLTHATE 437
AKE ++T +
Sbjct: 606 SEAKELYLNMITSGKQ 621
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 96/236 (40%), Gaps = 28/236 (11%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+ L V A V L+ + + + ++ L+ G+C +++ A + + M
Sbjct: 136 LLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADG 195
Query: 242 GF---SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
P+ VSY I + E K +M ++G P+V+T TIV+ L KA+ +
Sbjct: 196 QVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVV 255
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR--FLIYNTMISSACVRSEEGNALKLR 356
A V+++M + K VR + Y +I + +++
Sbjct: 256 DRAEGVFQQM------------------IDKGVRPNIVTYTCLIHGYLSIGQWKEVVRML 297
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+++ +PDC T+ L C K + + L M+ KGI P S + ++
Sbjct: 298 KEMSAHGLEPDCFTYGLLLDYLCKKGKCTEAR---KLFDSMIRKGIKPDVSIYGII 350
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 84/200 (42%), Gaps = 16/200 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K+++F EL Y++ M T ++ +++++ L K
Sbjct: 591 TYNTILHGLFKTRRFSEAKEL----------YLN---MITSGKQWSIYTYNIILNGLSKN 637
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
N V A K+F L KD + + F+++I K + + A + +G PD +
Sbjct: 638 NCVDEALKMFQSLCSKD-LQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTT 696
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y E+ E + D EM++ GC P+ + ++ L I A K+
Sbjct: 697 YRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLVRRLLLRGDISRAGAYLSKID 756
Query: 310 SDDCLTDTSFYSSLIFILSK 329
+ + S S LI + S+
Sbjct: 757 EKNFSLEASTTSMLISLFSR 776
>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
Length = 948
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 88/372 (23%), Positives = 149/372 (40%), Gaps = 70/372 (18%)
Query: 129 TPETYNAMVEALGKSKKFG----LMWELVKEIDELSNGYVSLAAMSTVMR----RLDTRA 180
P+ Y+A++ L +K + LM +L++ + + + + + R +
Sbjct: 69 NPQLYSAIIHVLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSVFNVLSRLESSKFTPNV 128
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
VL+ + V A V+ K + + Q ++++ G K + D K +M
Sbjct: 129 FGVLIIAFSEMGLVEEALWVYYKMD--VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVA 186
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G SP+ V+Y I+ CR+ DF K EM EK P+V+ TI++ L +I E
Sbjct: 187 RGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISE 246
Query: 301 -----------------------------------ALKVYEKMKSDDCLTDTSFYSSLIF 325
AL++Y++M D L + + LI
Sbjct: 247 AESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILID 306
Query: 326 ILSK------AVRFLI-------------YNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
L K A +FLI YN +I C AL L +IE+ P
Sbjct: 307 GLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILP 366
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
D T++ +K C RM++ L++EM KG +P T+ L + K+ GN ++
Sbjct: 367 DVFTYSILIKGLCGVDRMEEAD---GLLQEMKKKGFLPNAVTYNTLIDGYCKE--GNMEK 421
Query: 427 RIDELLTHATEQ 438
I E+ + TE+
Sbjct: 422 AI-EVCSQMTEK 432
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 29/227 (12%)
Query: 117 FTWAKTQTGY---MHTPETYNAMVEALGKS-----KKFGLMWELVKEIDELSNGYVSLAA 168
+T+ GY H + E LG FG++ + + + DE+ + L
Sbjct: 264 YTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLID 323
Query: 169 MSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDV 217
M++ + + L+D K +++ A +SL S+I + +
Sbjct: 324 MASFGVVPNIFVYNCLIDGYCKAGNLSEA----------LSLHSEIEKHEILPDVFTYSI 373
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LI G C + + A ++EM + GF P+ V+Y I+ YC+E + K +M EKG
Sbjct: 374 LIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKG 433
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+P++IT + ++ KA ++ A+ +Y +M L D Y++LI
Sbjct: 434 IEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALI 480
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 110/265 (41%), Gaps = 25/265 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++L+ L + ++ A +F ++ L + ++ ++ G+CK A + +EM
Sbjct: 232 TILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLG 291
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ V++ I+ C+ + L +M G P++ ++ KA + E
Sbjct: 292 DGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSE 351
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMIS 341
AL ++ +++ + L D YS LI L R + YNT+I
Sbjct: 352 ALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLID 411
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C A+++ ++ E +P+ T + + C +M+ M L EM+ KG
Sbjct: 412 GYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAM---GLYTEMVIKG 468
Query: 402 IVPQESTHKMLAEELEKKSLGNAKE 426
++P + L + K GN KE
Sbjct: 469 LLPDVVAYTALIDGHFKD--GNTKE 491
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F LI G+CK K + A EM G PD V+YT I+ + ++ + ++ KEMQ
Sbjct: 441 FSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQ 500
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
E G P+V T + ++ L K +I +A+K++
Sbjct: 501 EAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G+CK + A + +M + G P+ ++++ I+ YC+ EM
Sbjct: 406 YNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMV 465
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
KG P V+ T ++ K EA +++++M+
Sbjct: 466 IKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQ 500
>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
Length = 479
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 135/329 (41%), Gaps = 48/329 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY +V+ + K L+++++ELS+ + D S ++D L K
Sbjct: 118 TYGTIVDGMCKMGDTVSALNLLRKMEELSH------------IKPDVVIYSAIIDGLWKD 165
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
A +F++ +D I + +I+G+C + K AQ+ ++EM SPD V++
Sbjct: 166 GRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTF 225
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ I +E D L+EM G P+V+TC ++ L + ++ +AL++++ M+
Sbjct: 226 SGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQK 285
Query: 311 -----------DDCLTDTSFYSSLIFILSKAVRFL-------------------IYNTMI 340
+ D Y+ LI L +FL Y++MI
Sbjct: 286 SMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMI 345
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+ C +S A ++ + S P+ T + C + DG L L EM +
Sbjct: 346 NGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDG---LELFCEMGRR 402
Query: 401 GIVPQESTHKMLAEELEKKSLGNAKERID 429
GIV T+ L K +GN +D
Sbjct: 403 GIVANAITYITLIRGFRK--VGNINGSLD 429
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 24/196 (12%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F++LI +C K +A ++ + GF P V++ + C E + +M
Sbjct: 18 FNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM- 76
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
CKP+V+T T +M+ L + ++ EA+ + ++M D + +
Sbjct: 77 ---CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQ----------------I 117
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDS-CKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
Y T++ C + +AL L +K+EE S KPD ++ + R D NL
Sbjct: 118 TYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQ---NL 174
Query: 394 MREMLSKGIVPQESTH 409
EM KGI P T+
Sbjct: 175 FIEMQDKGIFPDIVTY 190
>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Glycine max]
Length = 747
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 117/273 (42%), Gaps = 61/273 (22%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G+CK K D A + + M+ G +PD ++Y + C+ +V K M+
Sbjct: 438 YNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAME 497
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL------IFILS 328
EKGC P++IT I++ +L KAK++ EA+ + +MKS D + +L I +
Sbjct: 498 EKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDID 557
Query: 329 KAVRFL--------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH--- 371
A + YN ++S+ + A+KL ++ C PD T+
Sbjct: 558 GAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVV 617
Query: 372 --------------------------------ARSLKMCCHKKRMKDGMLVLNLMREMLS 399
R L C K ++ + + +++L ML
Sbjct: 618 IDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHL---MLQ 674
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
KGIVP E+ + + E +KK + K +++LL
Sbjct: 675 KGIVP-ETVNTIF--EADKKVVAAPKILVEDLL 704
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 101/237 (42%), Gaps = 23/237 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I G+CK A + +K+ GF PD +Y I +C++ D + K+
Sbjct: 298 YNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGL 357
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
KG +PS++ ++ L + I AL++ +M + CL + Y+ +I L K
Sbjct: 358 GKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVS 417
Query: 330 --------------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
YNT+I C + + +A ++ ++ PD T+ L
Sbjct: 418 DASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLL 477
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDEL 431
C + ++ V+ + + M KG P T+ ++ + L K K + A + + E+
Sbjct: 478 NGLCKAGKSEE---VMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEM 531
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 135/326 (41%), Gaps = 52/326 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR-- 174
F AK++ G+ HT TY +V+ LG +F M +L+ E+ E N + A M+
Sbjct: 27 FNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEMRENVNNALLEGAYIEAMKNY 86
Query: 175 --------------RLD-------TRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSS 212
R+D + + +M+ LV+ A+KV+++ +D +
Sbjct: 87 GRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDV 146
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
+ + I +CKT + A + ++ M + G + V+Y + + E
Sbjct: 147 YTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDE 206
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK-MKSDDCLTDTSFYSSLIFI----- 326
M + P V+ ++H L K ++E+ ++ K +K C + ++ IF+
Sbjct: 207 MLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVC---PNLFTFNIFVQGLCR 263
Query: 327 ---LSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
L +AVR +S V +EE +K+ +PD T+ + C K
Sbjct: 264 EGALDRAVR--------NSRVVEAEE-----YLRKMVNGGFEPDDLTYNSIIDGYCKKGM 310
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTH 409
++D VL ++ + KG P E T+
Sbjct: 311 VQDANRVL---KDAVFKGFKPDEFTY 333
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 117/274 (42%), Gaps = 38/274 (13%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF---LKFKDCISLSSQIFDVLIHGWCKTRKSDYA-- 231
D A + L+ L K+ V + ++ LK C +L + F++ + G C+ D A
Sbjct: 215 DVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFT--FNIFVQGLCREGALDRAVR 272
Query: 232 -------QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
++ +++M GF PD ++Y I+ YC++ + + LK+ KG KP T
Sbjct: 273 NSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFT 332
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR--FLIYNTMISS 342
+++ K A+ V++ L K +R ++YNT+I
Sbjct: 333 YCSLINGFCKDGDPDRAMAVFKDG------------------LGKGLRPSIVLYNTLIKG 374
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
+ AL+L ++ E+ C P+ T+ + C + D +L+ + ++KG
Sbjct: 375 LSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDAS---HLVDDAIAKGC 431
Query: 403 VPQESTHKMLAEELEKK-SLGNAKERIDELLTHA 435
P T+ L + K+ L +A E ++ + +
Sbjct: 432 PPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQG 465
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 108/260 (41%), Gaps = 24/260 (9%)
Query: 54 PDEDFVIPSLA-SWVESLKLNEQSRISSHALSEDHETDVDKVSEILRK--RYPSPDKVVE 110
P + F +L + + LKL+ + + + S+ DV + +L + ++V+E
Sbjct: 432 PPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVME 491
Query: 111 ALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMS 170
K A + G TYN +V++L K+KK +L+ E M
Sbjct: 492 IFK------AMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGE-------------MK 532
Query: 171 TVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL--SSQIFDVLIHGWCKTRKS 228
+ + D + L K + AY++F + + + ++ +++++ + +
Sbjct: 533 SKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNM 592
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+ A K M G PD +Y I+ +C+ + + L E EK PS+ T V
Sbjct: 593 NMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRV 652
Query: 289 MHALEKAKQIYEALKVYEKM 308
++ L +++EA+ + M
Sbjct: 653 LNCLCVKDKVHEAVGIIHLM 672
>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
Length = 683
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 97/238 (40%), Gaps = 21/238 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC--ISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D +D + K A + K ++ I + I+ +I G CK + +
Sbjct: 216 DQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNL 275
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
EM G P+ V+Y C I +C + L+EM E+ P+V+T +++A K
Sbjct: 276 FIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVK 335
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
+ +EA ++Y++M + +T + YN+MI C + A
Sbjct: 336 EGKFFEAAELYDEMLPRGIIPNT----------------ITYNSMIDGFCKQDRLDAAED 379
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ + C PD T + C KR+ DGM L+ EM +G+V T+ L
Sbjct: 380 MFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGM---ELLHEMPRRGLVANTVTYNTL 434
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 128/330 (38%), Gaps = 51/330 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYNA++ A K KF EL E+ L G + +T + ++D K+
Sbjct: 325 TYNALINAFVKEGKFFEAAELYDEM--LPRGIIP-----------NTITYNSMIDGFCKQ 371
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ + A +F + K C S F LI G+C ++ D + + EM + G + V+
Sbjct: 372 DRLDAAEDMFYLMATKGC-SPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVT 430
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y I +C D ++M G P ++TC ++ L ++ +AL++++ M+
Sbjct: 431 YNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 490
Query: 310 SDDCLTDTSF-----------YSSLIFILSKAVRFL-------------------IYNTM 339
D S Y+ LI L +FL Y++M
Sbjct: 491 KSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 550
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I C +S A ++ + S P+ T + C R+ DG L L EM
Sbjct: 551 IDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDG---LELFCEMGR 607
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERID 429
+GIV + L K +GN +D
Sbjct: 608 RGIVADAIIYITLIYGFRK--VGNINGALD 635
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 16/189 (8%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS + ++ LI+ + K K A + EM G P+ ++Y I+ +C++ +
Sbjct: 319 ISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE 378
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
M KGC P V T T ++ AK+I + +++ +M + +T
Sbjct: 379 DMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANT---------- 428
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+ YNT+I C+ + AL L Q++ PD T L C ++KD
Sbjct: 429 ------VTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDA 482
Query: 388 MLVLNLMRE 396
+ + M++
Sbjct: 483 LEMFKAMQK 491
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 93/213 (43%), Gaps = 20/213 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F L++G C+ + A + M ++G PD ++Y F++ C+ D L++M+
Sbjct: 185 FTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKME 244
Query: 275 EKG-CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
E KP+V+ + ++ L K + ++ ++ +M+ D + +++
Sbjct: 245 EISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQ------DKGIFPNIV--------- 289
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
YN MI C+ A +L Q++ E P+ T+ + + + + L
Sbjct: 290 -TYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAA---EL 345
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
EML +GI+P T+ + + K+ +A E
Sbjct: 346 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE 378
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 19/212 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ L+ + + D ++M + D S+T I+ +C T ++
Sbjct: 84 FNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLT 143
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL---------IF 325
+ G P V+T T ++H L ++ EAL ++ ++ D LT T+ + L +
Sbjct: 144 KLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVA 203
Query: 326 ILSKAVRF------LIYNTMISSACVRSEEGNALKLRQKIEEDS-CKPDCETHARSLKMC 378
+L + V + Y T + C + +AL L +K+EE S KP+ ++ +
Sbjct: 204 LLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGL 263
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
C R D NL EM KGI P T+
Sbjct: 264 CKDGRHSDSH---NLFIEMQDKGIFPNIVTYN 292
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++LI G K A++ +EM G PD ++Y+ I+ C++ + M
Sbjct: 512 YNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMG 571
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
K P+V+T +++ KA ++ + L+++ +M + D Y +LI+ K
Sbjct: 572 SKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNIN 631
Query: 335 ----IYNTMISSA 343
I+ MISS
Sbjct: 632 GALDIFQEMISSG 644
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 20/182 (10%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L KF EL +E+ G V DT S ++D L K+
Sbjct: 511 TYNILICGLINEGKFLEAEELYEEMPH--RGIVP-----------DTITYSSMIDGLCKQ 557
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ + A ++F+ S + F+ LI+G+CK + D + EM + G D + Y
Sbjct: 558 SRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIY 617
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA------LEKAKQIYEALKV 304
I + + + +EM G P IT ++ LE+A + E L+
Sbjct: 618 ITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQR 677
Query: 305 YE 306
Y+
Sbjct: 678 YQ 679
>gi|21537126|gb|AAM61467.1| unknown [Arabidopsis thaliana]
Length = 766
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 108/221 (48%), Gaps = 19/221 (8%)
Query: 197 AYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255
A +V K K+ SL +++LI +C ++ + + +M + G PD ++Y I
Sbjct: 530 AIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLIS 589
Query: 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315
+ + KDF V+ +++M+E G P+V T V+ A ++ EALK+++ M +
Sbjct: 590 FFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVN 649
Query: 316 DTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ +IYN +I++ G AL L+++++ +P+ ET+ +L
Sbjct: 650 PNT---------------VIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETY-NAL 693
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C ++K G +L LM EM+ + P + T ++L E L
Sbjct: 694 FKCLNEK--TQGETLLKLMDEMVEQSCEPNQITMEILMERL 732
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 115/272 (42%), Gaps = 37/272 (13%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
+NA++ LG++ M +LV ++DE V R D + +L++TL K
Sbjct: 297 FNALLSCLGRNMDISRMNDLVLKMDE-------------VKIRPDVVTLGILINTLSKSR 343
Query: 193 SVAHAYKVFLKFK-------DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM-FQHGFS 244
V A +VF + + + I S F+ LI G CK + A++ + M +
Sbjct: 344 RVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCV 403
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P+ V+Y C I+ YCR + M+E KP+V+T ++ + + + A+
Sbjct: 404 PNAVTYNCLIDGYCRAVKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVF 463
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
+ M+ + + + Y T+I + C S A+ +K+ E C
Sbjct: 464 FMDMEKEGVKGNV----------------VTYMTLIHACCSVSNVEKAMYWYEKMLEAGC 507
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
PD + + + C +R D + V+ ++E
Sbjct: 508 SPDAKIYYALISGLCQVRRDHDAIRVVEKLKE 539
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 114/272 (41%), Gaps = 58/272 (21%)
Query: 172 VMRRLDT-----RAMSVLMDTLVKRNSVAHAYKVF---LKFKDCISLSSQIFDVLIHGWC 223
V RLD+ + +V++D L++ V A+KV L+ + + D+++H
Sbjct: 174 VYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVW 233
Query: 224 KTR--KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC----------------------- 258
K R + + HG SP+ V T FI C
Sbjct: 234 KGRLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANAAWDILSDLMKNKTPLE 293
Query: 259 ------------REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
R D +++ + +M E +P V+T I+++ L K++++ EAL+V+E
Sbjct: 294 APPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLSKSRRVDEALEVFE 353
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC--VRSEEGNALKLRQKIEEDSC 364
+M+ TD I + ++ F NT+I C R +E L +R K+EE C
Sbjct: 354 QMRGKR--TDDGN-----VIKADSIHF---NTLIDGLCKVGRLKEAEELLVRMKLEE-RC 402
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
P+ T+ + C +++ V++ M+E
Sbjct: 403 VPNAVTYNCLIDGYCRAVKLETAKEVVSRMKE 434
>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
microcephala]
Length = 431
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 119/280 (42%), Gaps = 33/280 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L + R + D SVL++ L K + +
Sbjct: 170 KWGLRPSVV-SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 228
Query: 195 AHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
A ++F + K + + F LI G CK + D A + K+M SPD ++Y
Sbjct: 229 DDANELFDEMLVKGLVP-NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 287
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I C++ D ++ + + EM KG KP IT T ++ K + A + ++M ++
Sbjct: 288 LIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQEN 347
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
D Y++L IS C +A K+ +++ KPD T+
Sbjct: 348 IRLDEVAYTAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPDARTYT 391
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C K + G L++EM G VP T+ +L
Sbjct: 392 MIINEFCKKGDVWKGS---KLLKEMQRDGHVPSVVTYNVL 428
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 106/261 (40%), Gaps = 51/261 (19%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
S F++L+H +CK AQ + + G P VSY + Y R D +
Sbjct: 141 SLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 200
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------ 324
M G +P V T +++++ L K ++ +A +++++M + + +++LI
Sbjct: 201 SAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKN 260
Query: 325 -----------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+LS+++ + YNT+I C + + A L ++ KPD T+
Sbjct: 261 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITY 320
Query: 372 ARSLKMCC----------HKKRMKDGMLVLN----------------------LMREMLS 399
+ CC H+KRM + L+ ++REMLS
Sbjct: 321 TTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLS 380
Query: 400 KGIVPQESTHKMLAEELEKKS 420
G+ P T+ M+ E KK
Sbjct: 381 VGLKPDARTYTMIINEFCKKG 401
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 14/161 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K L+ E MS + D + L+D K
Sbjct: 284 TYNTLIYGLCKKGDLKQAHHLIDE-------------MSVKGLKPDKITYTTLIDGCCKE 330
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A++ + ++ I L + LI G C+ +S A+K ++EM G PD +Y
Sbjct: 331 GDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTY 390
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
T I +C++ D K LKEMQ G PSV+T ++M+
Sbjct: 391 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G CK D A + K M Q D V+YT I C+E + L+EM
Sbjct: 320 YTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREML 379
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G KP T T++++ K +++ K+ ++M+ D + Y+ L+
Sbjct: 380 SVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 80/198 (40%), Gaps = 22/198 (11%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+E+ + G+ + + +C++ D R + + G +PSV++ +M+ +
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA--------------VRFLI-----Y 336
+ E ++ M + D YS LI L K V+ L+ +
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTF 250
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
T+I C A+++ +++ S PD T+ + C K +K +L+ E
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH---HLIDE 307
Query: 397 MLSKGIVPQESTHKMLAE 414
M KG+ P + T+ L +
Sbjct: 308 MSVKGLKPDKITYTTLID 325
>gi|242061542|ref|XP_002452060.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
gi|241931891|gb|EES05036.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
Length = 674
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 141/319 (44%), Gaps = 47/319 (14%)
Query: 137 VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT---RAMSVLMDTLVKRNS 193
VE L + K+G M ++V L NG+ + ++ L T R +V + +K
Sbjct: 274 VELLEQMPKYGCMPDVVI-YSTLVNGFSEHGRVDDALKLLSTMLCRPNTVCYNAALKGLC 332
Query: 194 VAHAYKVFLKF------KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+A + + KDC + F LI+ C+ R ++YA + +++M ++G+ PD
Sbjct: 333 IAGRWDEVGELIAEMVRKDCPP-NDATFSTLINSLCQNRLAEYAIEVLEQMQKYGYMPDV 391
Query: 248 VSY----TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
VSY +CF E C D LK + CKP I+ V+ L +A++ Y+A +
Sbjct: 392 VSYNTIISCFSEQAC-------ADDALKLLNSMLCKPDTISFNAVLKCLCRAERWYDAAE 444
Query: 304 VYEKMKSDDCLTDTSFYSSLI---------------FILSKAVR----FLIYNTMISSAC 344
+ KM +DC T+ ++ LI F L R + Y+++I+
Sbjct: 445 LMAKMLKEDCHTNEMTFNILIDSLCQNGQVKDAIEMFELMPKYRCTPDIVTYSSLINGFS 504
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ + A L + + C+ D ++ +LK C R D L+ +M++K +P
Sbjct: 505 EQGLDKVAFDLFRSM---PCRADIFSYNATLKGLCMAARWDDAG---ELIADMVTKDCLP 558
Query: 405 QESTHKMLAEELEKKSLGN 423
E T +L L +K L N
Sbjct: 559 NEVTFNILINSLCQKGLVN 577
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 25/208 (12%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G+C++ + A + + M +PD +Y ++ C K + + + ++EM
Sbjct: 190 YTALIDGYCRSGRLTDALRLIASM---PVAPDTYTYNTVLKGLCFAKQWEEAEELMREMI 246
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
C P+ +T + A + + A+++ E+M C+ D YS+L+ S+ R
Sbjct: 247 RNNCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCMPDVVIYSTLVNGFSEHGRV- 305
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+ALKL + C+P+ + +LK C R + V L+
Sbjct: 306 ---------------DDALKLLSTM---LCRPNTVCYNAALKGLCIAGRWDE---VGELI 344
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLG 422
EM+ K P ++T L L + L
Sbjct: 345 AEMVRKDCPPNDATFSTLINSLCQNRLA 372
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 130/315 (41%), Gaps = 65/315 (20%)
Query: 137 VEALGKSKKFGLMWELVKE------IDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+E L + +K+G M ++V E + +L +++++ + DT + + ++ L +
Sbjct: 376 IEVLEQMQKYGYMPDVVSYNTIISCFSEQACADDALKLLNSMLCKPDTISFNAVLKCLCR 435
Query: 191 RNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
A ++ K +DC + + F++LI C+ + A + + M ++ +PD V
Sbjct: 436 AERWYDAAELMAKMLKEDCHT-NEMTFNILIDSLCQNGQVKDAIEMFELMPKYRCTPDIV 494
Query: 249 SYTCFIEHY-----------------CREKDFRKVDYTLK----------------EMQE 275
+Y+ I + CR D + TLK +M
Sbjct: 495 TYSSLINGFSEQGLDKVAFDLFRSMPCR-ADIFSYNATLKGLCMAARWDDAGELIADMVT 553
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335
K C P+ +T I++++L + + A++VYE+M D Y++LI
Sbjct: 554 KDCLPNEVTFNILINSLCQKGLVNRAIEVYEQMPKYGITPDIFTYNALI----------- 602
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
N C+ +ALK + C+PD ++ LK C +R KD L+
Sbjct: 603 -NGYSEQGCL----DDALKFLSTM---PCEPDTISYNSILKGLCRAERWKDAE---KLVT 651
Query: 396 EMLSKGIVPQESTHK 410
EML K P E T K
Sbjct: 652 EMLRKNCTPNEVTFK 666
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/382 (19%), Positives = 152/382 (39%), Gaps = 85/382 (22%)
Query: 99 RKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE 158
R+R ++V+EALK T ++N +V + G +W+ + ++
Sbjct: 132 RRRLADAERVLEALK----------TSGAADAVSHNTLVAGYCRD---GSLWDAERVLE- 177
Query: 159 LSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVL 218
AA ++ + T + L+D + + A ++ ++ + ++ +
Sbjct: 178 --------AARASGAANVVT--YTALIDGYCRSGRLTDALRLIASMP--VAPDTYTYNTV 225
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
+ G C ++ + A++ M+EM ++ P+ V++ I +C+ + L++M + GC
Sbjct: 226 LKGLCFAKQWEEAEELMREMIRNNCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGC 285
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYE-------------------------------- 306
P V+ + +++ + ++ +ALK+
Sbjct: 286 MPDVVIYSTLVNGFSEHGRVDDALKLLSTMLCRPNTVCYNAALKGLCIAGRWDEVGELIA 345
Query: 307 KMKSDDCLTDTSFYSSLIFILSK------AVRFL-------------IYNTMISSACVRS 347
+M DC + + +S+LI L + A+ L YNT+IS ++
Sbjct: 346 EMVRKDCPPNDATFSTLINSLCQNRLAEYAIEVLEQMQKYGYMPDVVSYNTIISCFSEQA 405
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
+ALKL + CKPD + LK C +R D LM +ML + E
Sbjct: 406 CADDALKLLNSM---LCKPDTISFNAVLKCLCRAERWYDAA---ELMAKMLKEDCHTNEM 459
Query: 408 THKMLAEELEKKSLGNAKERID 429
T +L + L + G K+ I+
Sbjct: 460 TFNILIDSLCQN--GQVKDAIE 479
>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
Length = 661
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 116/273 (42%), Gaps = 26/273 (9%)
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ A++ L+ +L VA A +FL+F I ++ ++ L+ G+ K A++ +
Sbjct: 256 SNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVL 315
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM Q G +PD +Y+ ++ Y R + LKEM+ G KPS + ++
Sbjct: 316 DEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDR 375
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIY 336
+ +A V +M + D FY+ +I K + +
Sbjct: 376 GEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTW 435
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT+I + C A++L ++ E +C T+ + + ++R + V ++ E
Sbjct: 436 NTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEG---VEAMLAE 492
Query: 397 MLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
M +G+VP T+ L + + G KE +D
Sbjct: 493 MKEQGLVPNIITYTTLVDVYGRS--GRFKEAVD 523
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/337 (21%), Positives = 135/337 (40%), Gaps = 45/337 (13%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEID----------------------EL 159
+Q G TY+ +V+A ++ ++ L+KE++ E
Sbjct: 319 SQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEW 378
Query: 160 SNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVL 218
+ L M R D +V++DT K N + HA F + ++ I ++ L
Sbjct: 379 QKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTL 438
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
I CK + D A + EM + +Y I E+ + V+ L EM+E+G
Sbjct: 439 IDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGL 498
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------------FI 326
P++IT T ++ ++ + EA+ E MK+D + Y +L+
Sbjct: 499 VPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALN 558
Query: 327 LSKAVRF-------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC 379
+ KA+R ++ N++I++ A + Q ++E+ +PD T+ +K
Sbjct: 559 VVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALI 618
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ + V + EM++ G P ML L
Sbjct: 619 RVEQFEK---VPVIYEEMITSGCAPDRKARAMLRSAL 652
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 14/168 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY +V+ G+S +F E V I+ AM + L++ +R
Sbjct: 504 TYTTLVDVYGRSGRFK---EAVDCIE----------AMKADGLKPSPTMYHALVNAYAQR 550
Query: 192 NSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
HA V + D + S+ + + LI+ + + R+ A ++ M ++G PD ++Y
Sbjct: 551 GLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITY 610
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
T ++ R + F KV +EM GC P ++ AL K +
Sbjct: 611 TTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSALRYMKHM 658
>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
Length = 479
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 135/329 (41%), Gaps = 48/329 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY +V+ + K L+++++ELS+ + D S ++D L K
Sbjct: 118 TYGTIVDGMCKMGDTVSALNLLRKMEELSH------------IKPDVVIYSAIIDGLWKD 165
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
A +F++ +D I + +I+G+C + K AQ+ ++EM SPD V++
Sbjct: 166 GRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTF 225
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ I +E D L+EM G P+V+TC ++ L + ++ +AL++++ M+
Sbjct: 226 SGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQK 285
Query: 311 -----------DDCLTDTSFYSSLIFILSKAVRFL-------------------IYNTMI 340
+ D Y+ LI L +FL Y++MI
Sbjct: 286 SMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMI 345
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+ C +S A ++ + S P+ T + C + DG L L EM +
Sbjct: 346 NGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDG---LELFCEMGRR 402
Query: 401 GIVPQESTHKMLAEELEKKSLGNAKERID 429
GIV T+ L K +GN +D
Sbjct: 403 GIVANAITYITLIRGFRK--VGNINGSLD 429
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 24/196 (12%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F++LI +C K +A ++ + GF P V++ + C E + +M
Sbjct: 18 FNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM- 76
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
CKP+V+T T +M+ L + ++ EA+ + ++M D + +
Sbjct: 77 ---CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQ----------------I 117
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDS-CKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
Y T++ C + +AL L +K+EE S KPD ++ + R D NL
Sbjct: 118 TYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQ---NL 174
Query: 394 MREMLSKGIVPQESTH 409
EM KGI P T+
Sbjct: 175 FIEMQDKGIFPDIVTY 190
>gi|22327132|ref|NP_680234.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174514|sp|Q9LKU8.1|PP401_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g28460
gi|9502149|gb|AAF88002.1| contains similarity to Pfam family PF01535 (Domain of unknown
function), score=340.5, E=1.9e-98, N=2 [Arabidopsis
thaliana]
gi|15529206|gb|AAK97697.1| AT5g28460/F21B23_120 [Arabidopsis thaliana]
gi|27363272|gb|AAO11555.1| At5g28460/F21B23_120 [Arabidopsis thaliana]
gi|332006418|gb|AED93801.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 766
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 108/221 (48%), Gaps = 19/221 (8%)
Query: 197 AYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255
A +V K K+ SL +++LI +C ++ + + +M + G PD ++Y I
Sbjct: 530 AIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLIS 589
Query: 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315
+ + KDF V+ +++M+E G P+V T V+ A ++ EALK+++ M +
Sbjct: 590 FFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVN 649
Query: 316 DTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ +IYN +I++ G AL L+++++ +P+ ET+ +L
Sbjct: 650 PNT---------------VIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETY-NAL 693
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C ++K G +L LM EM+ + P + T ++L E L
Sbjct: 694 FKCLNEK--TQGETLLKLMDEMVEQSCEPNQITMEILMERL 732
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 115/272 (42%), Gaps = 37/272 (13%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
+NA++ LG++ M +LV ++DE V R D + +L++TL K
Sbjct: 297 FNALLSCLGRNMDISRMNDLVLKMDE-------------VKIRPDVVTLGILINTLCKSR 343
Query: 193 SVAHAYKVFLKFK-------DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM-FQHGFS 244
V A +VF + + + I S F+ LI G CK + A++ + M +
Sbjct: 344 RVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCV 403
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P+ V+Y C I+ YCR + M+E KP+V+T ++ + + + A+
Sbjct: 404 PNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVF 463
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
+ M+ + + + Y T+I + C S A+ +K+ E C
Sbjct: 464 FMDMEKEGVKGNV----------------VTYMTLIHACCSVSNVEKAMYWYEKMLEAGC 507
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
PD + + + C +R D + V+ ++E
Sbjct: 508 SPDAKIYYALISGLCQVRRDHDAIRVVEKLKE 539
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 117/272 (43%), Gaps = 58/272 (21%)
Query: 172 VMRRLDT-----RAMSVLMDTLVKRNSVAHAYKVF---LKFKDCISLSSQIFDVLIHG-W 222
V RLD+ + +V++D L++ V A+KV L+ + + D+++H W
Sbjct: 174 VYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVW 233
Query: 223 CKTRKSDYAQKAMKEMFQ-HGFSPDGVSYTCFIEHYC----------------------- 258
+ ++ A+ F HG SP+ V T FI C
Sbjct: 234 KERLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLE 293
Query: 259 ------------REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
R D +++ + +M E +P V+T I+++ L K++++ EAL+V+E
Sbjct: 294 APPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFE 353
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC--VRSEEGNALKLRQKIEEDSC 364
+M+ TD I + ++ F NT+I C R +E L +R K+EE C
Sbjct: 354 QMRGKR--TDDGN-----VIKADSIHF---NTLIDGLCKVGRLKEAEELLVRMKLEE-RC 402
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
P+ T+ + C +++ V++ M+E
Sbjct: 403 VPNAVTYNCLIDGYCRAGKLETAKEVVSRMKE 434
>gi|222624423|gb|EEE58555.1| hypothetical protein OsJ_09859 [Oryza sativa Japonica Group]
Length = 858
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 138/324 (42%), Gaps = 52/324 (16%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-------- 176
G +P + + LG++++F MW+L++ L V+ V+ R+
Sbjct: 105 GVAPSPFALDTALYVLGRARRFAHMWDLLRSSRRLVPDAVTPRTAMVVLGRVAKVCSVRE 164
Query: 177 -------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV 217
+ + + L+ TL + S++ A V+ K ++ Q F++
Sbjct: 165 TVDSFRRLSRMLRGRGDDQEGQLFNALLRTLCQEKSMSDARNVYHALKYEFKVNRQTFNI 224
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
L+ GW + ++ A+ + EM + G PD V+Y I+ +C+ + L EM+EK
Sbjct: 225 LLSGW---KSAEDAEAFVAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMREKD 281
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--FILSKAV--RF 333
P VIT T ++ L Q +A + ++M C D Y++ I F+++K + F
Sbjct: 282 ISPDVITYTSLIGGLGLIGQPDKAKHLLKEMHELGCYPDVPAYNTAIRNFVIAKRLGDAF 341
Query: 334 LIYNTMISSACVRS---------------EEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+ M S + + + G+A +L +++ + C P+ ++ +++C
Sbjct: 342 ALMEEMASKGLMPNATTYNLFFRCYYWAYDIGSAWQLYERMRSEGCFPNTQSCMFIVRLC 401
Query: 379 CHKKRMKDGMLVLNLMREMLSKGI 402
R+ L L +M++ G
Sbjct: 402 HRHGRVAQ---ALELWSDMVNNGF 422
>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
[Burroughsia fastigiata]
Length = 431
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 134/329 (40%), Gaps = 51/329 (15%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRL----DTRAMSVLM 185
+T ++E L K K F L+W +E L GY SL + + R D R +
Sbjct: 108 DTCRKVLEHLMKLKYFKLVWGFYEEF--LECGYPASLYFFNILXHRFCKEGDIRVAQSVF 165
Query: 186 DTLVK---RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
D + K R SV ++ L++G+ + D K M G
Sbjct: 166 DAITKWGLRPSVVS------------------YNTLMNGYIRLGDLDEGFKLKSAMHASG 207
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
PD +Y+ I C+E + EM KG P+ +T T ++ K ++ A+
Sbjct: 208 VXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 267
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSA 343
++Y++M S L D Y++LI+ L K + Y T+I
Sbjct: 268 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGC 327
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C + A + R+++ +++ + D + + C + R D +MREMLS G+
Sbjct: 328 CKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE---KMMREMLSVGLK 384
Query: 404 PQESTHKMLAEELEKKS-LGNAKERIDEL 431
P T+ M+ E+ KK +G + + E+
Sbjct: 385 PDTGTYTMIINEVCKKGDVGKGSKLLKEM 413
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 114/280 (40%), Gaps = 33/280 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L AM D SVL++ L K + +
Sbjct: 170 KWGLRPSVV-SYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKM 228
Query: 195 AHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
A ++F + K + + F LI G CK + D A + K+M PD ++Y
Sbjct: 229 DXANELFDEMLVKGLVP-NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNT 287
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I C++ D + + EM KG KP IT T ++ K + A + ++M ++
Sbjct: 288 LIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQEN 347
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
D Y++L IS C +A K+ +++ KPD T+
Sbjct: 348 IRLDDVAYTAL----------------ISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYT 391
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C K + G L++EM G P T+ +L
Sbjct: 392 MIINEVCKKGDVGKGS---KLLKEMQXDGHAPSVVTYNVL 428
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 14/161 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K +L+ E MS + D + L+D K
Sbjct: 284 TYNTLIYGLCKKGDLNQAHDLIDE-------------MSMKGLKPDKITYTTLIDGCCKE 330
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A++ + ++ I L + LI G C+ +S A+K M+EM G PD +Y
Sbjct: 331 GDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTY 390
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
T I C++ D K LKEMQ G PSV+T ++M+
Sbjct: 391 TMIINEVCKKGDVGKGSKLLKEMQXDGHAPSVVTYNVLMNG 431
>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Brachypodium distachyon]
Length = 571
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 138/304 (45%), Gaps = 43/304 (14%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSN-GYV-SLAAMSTVMRRLDTRA 180
Q G + TY+A+V L K + E VK +DE+ + G V +LA +++V+ +
Sbjct: 286 QQGIAASVVTYSALVWGLCSEGK---VEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKG 342
Query: 181 MSV----LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
M +D++ ++N + + + +L+ G+ + K A +
Sbjct: 343 MMTDAEGWIDSMEQKN---------------VKPNVVTYTILVDGYRRLDKMKDALAVKE 387
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M G P+ Y C I + R D+R V L EM+ KG + ++T +++ AL
Sbjct: 388 AMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKG 447
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
++ +A+K+ ++M ++ L YNT+I+ C + +A ++R
Sbjct: 448 EVRKAVKLLDEM----------------LMVGLEPVHLTYNTIINGYCEKGNIKSAYEIR 491
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++E+ + + T+ +K C +M++ +LN EML KG+VP T+ + E +
Sbjct: 492 TRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLN---EMLEKGLVPNGVTYDTIKEGM 548
Query: 417 EKKS 420
+K
Sbjct: 549 MEKG 552
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/249 (17%), Positives = 107/249 (42%), Gaps = 29/249 (11%)
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAH----AYKVFLKFKDCISL---SSQIFDVLIHGW 222
++++R L + ++ D LV + A +Y+ FL D S+ + L+
Sbjct: 101 ASIVRALPASSSPLIADLLVLALASASQPLASYEAFLLAGDAHPRHRPSAFSVNRLLSAL 160
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
+ D A++A K + SPD ++ I C+ RK K+++ G PSV
Sbjct: 161 VAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSV 220
Query: 283 ITCTIVMHAL---EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTM 339
+T ++ +A ++Y + ++M + + +N +
Sbjct: 221 VTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNE----------------VTFNVL 264
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
++ C S A+++ +++++ T++ + C + ++++G+ +++ M+++
Sbjct: 265 VNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDL-- 322
Query: 400 KGIVPQEST 408
G+VP +T
Sbjct: 323 -GLVPNLAT 330
>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
Length = 897
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 101/211 (47%), Gaps = 19/211 (9%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
++L+SQ ++ +I+ CK + D A ++EM G +PD SY I H C + + +
Sbjct: 396 LTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAE 455
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ + + E+G + IT ++HAL + + +A+++ ++M C D
Sbjct: 456 HMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDV---------- 505
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+ YN +I + C +L L +++ E KP+ ++ + C ++R++D
Sbjct: 506 ------VSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRD- 558
Query: 388 MLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
L L ++ML++G+ P T+ L L K
Sbjct: 559 --ALELSKQMLNQGLAPDIVTYNTLINGLCK 587
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 94/232 (40%), Gaps = 18/232 (7%)
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
+D + ++ F V C+ ++D A ++ M +HG PD V Y I C +
Sbjct: 152 RDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVT 211
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ L EM GC V T V+ + ++ EA ++ ++M + C+ Y L+
Sbjct: 212 EAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLL 271
Query: 325 FILSKA---------------VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
L + + +++NT+I + A +L + + C+PD
Sbjct: 272 QGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAH 331
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
T++ + C R+ + L+REM KG P T+ ++ K +
Sbjct: 332 TYSILMHGLCKLGRIGS---AVRLLREMEKKGFAPNVVTYTIVLHSFCKNGM 380
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 16/178 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +IH + + A + KEM HG S D VSY I+ C++ + + L+EM
Sbjct: 473 YNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMA 532
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
EKG KP+ ++ I++ L K +++ +AL++ ++M + D +
Sbjct: 533 EKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPD----------------IV 576
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
YNT+I+ C AL L +K+ ++ PD T+ + C + + D ++LN
Sbjct: 577 TYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLN 634
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMKE 237
+ N++ HA +++D + L+ ++ ++ LI CK D + ++E
Sbjct: 471 ITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE 530
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M + G P+ VSY I C+E+ R K+M +G P ++T +++ L K
Sbjct: 531 MAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGW 590
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLI 324
++ AL + EK+ +++ D Y+ LI
Sbjct: 591 MHAALNLLEKLHNENVHPDIITYNILI 617
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 98/221 (44%), Gaps = 18/221 (8%)
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
L+ +F+ +I G K A + + M G PD +Y+ + C+
Sbjct: 293 LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRL 352
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
L+EM++KG P+V+T TIV+H+ K + + E+M + ++ Y+ +I+ L K
Sbjct: 353 LREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCK 412
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG-M 388
R A+ L Q++ C PD ++ + C+ ++M++
Sbjct: 413 DGRM----------------DEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEH 456
Query: 389 LVLNLMRE-MLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
+ NL+ E +++ GI H +L + + ++ AKE I
Sbjct: 457 MFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMI 497
>gi|115451461|ref|NP_001049331.1| Os03g0208600 [Oryza sativa Japonica Group]
gi|26006498|gb|AAN77307.1| Hypothetical protein [Oryza sativa Japonica Group]
gi|108706773|gb|ABF94568.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113547802|dbj|BAF11245.1| Os03g0208600 [Oryza sativa Japonica Group]
Length = 531
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 138/324 (42%), Gaps = 52/324 (16%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-------- 176
G +P + + LG++++F MW+L++ L V+ V+ R+
Sbjct: 105 GVAPSPFALDTALYVLGRARRFAHMWDLLRSSRRLVPDAVTPRTAMVVLGRVAKVCSVRE 164
Query: 177 -------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV 217
+ + + L+ TL + S++ A V+ K ++ Q F++
Sbjct: 165 TVDSFRRLSRMLRGRGDDQEGQLFNALLRTLCQEKSMSDARNVYHALKYEFKVNRQTFNI 224
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
L+ GW + ++ A+ + EM + G PD V+Y I+ +C+ + L EM+EK
Sbjct: 225 LLSGW---KSAEDAEAFVAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMREKD 281
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--FILSKAV--RF 333
P VIT T ++ L Q +A + ++M C D Y++ I F+++K + F
Sbjct: 282 ISPDVITYTSLIGGLGLIGQPDKAKHLLKEMHELGCYPDVPAYNTAIRNFVIAKRLGDAF 341
Query: 334 LIYNTMISSACVRS---------------EEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+ M S + + + G+A +L +++ + C P+ ++ +++C
Sbjct: 342 ALMEEMASKGLMPNATTYNLFFRCYYWAYDIGSAWQLYERMRSEGCFPNTQSCMFIVRLC 401
Query: 379 CHKKRMKDGMLVLNLMREMLSKGI 402
R+ L L +M++ G
Sbjct: 402 HRHGRVAQ---ALELWSDMVNNGF 422
>gi|255660956|gb|ACU25647.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 376
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 115/270 (42%), Gaps = 29/270 (10%)
Query: 157 DELSNGYVSLAAMST------VMRRLDTRAMS---VLMDTLVKRNSVAHAYKVFLKFKDC 207
+ + NGY +A + +M R++S ++M L V ++ K+
Sbjct: 29 NAMLNGYFRVAKIKDCFELWEMMGSEGNRSVSSFNIMMRGLFDNGKVDEVISIWELMKES 88
Query: 208 ISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
+ I + +L+HG+CK SD + ++ Q G D +Y+ I C+E + +
Sbjct: 89 GFVEDSITYGILVHGFCKNGYSDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDRA 148
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
Y L M + GCKP+V +++ L A + +A++V+ +M + C
Sbjct: 149 LYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHC------------- 195
Query: 327 LSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
+ + YNT+I+ C G A L +++ + P T++ +K C +++
Sbjct: 196 ---SPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVER 252
Query: 387 GMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
L L ++ SKG P H +L L
Sbjct: 253 ---ALQLWNQVTSKGFKPDVQMHNILIHGL 279
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 120/293 (40%), Gaps = 41/293 (13%)
Query: 123 QTGYMHTPETYNAMVEAL---GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT- 178
++G++ TY +V G S K + E+ ++ + + + A ++ + + +
Sbjct: 87 ESGFVEDSITYGILVHGFCKNGYSDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLD 146
Query: 179 RAMSVLMDTLVKRN--SVAHAYKVFL-------KFKDCISLSSQI-----------FDVL 218
RA+ VL + ++K H Y + KF+D I + ++ ++ L
Sbjct: 147 RALYVL-NGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTL 205
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
I+G CK A +KE+ G P ++Y+ ++ C + + ++ KG
Sbjct: 206 INGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGF 265
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNT 338
KP V I++H L ++ AL +Y M C A + +NT
Sbjct: 266 KPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKC----------------APNLVSHNT 309
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
++ + NAL + +I + +PD ++ +LK C R+ D +L L
Sbjct: 310 LMEGFYKDGDIRNALVIWARILRNGLEPDIISYNITLKGLCSCNRISDAILFL 362
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 87/230 (37%), Gaps = 24/230 (10%)
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
C++ D A++ KE+ + SPD V + Y R + + L EM SV
Sbjct: 1 CESGDIDGAERVYKEIVESKVSPDAVVCNAMLNGYFRVAKIKDC-FELWEMMGSEGNRSV 59
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------------- 329
+ I+M L ++ E + ++E MK + D+ Y L+ K
Sbjct: 60 SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYSDKSLHVLEM 119
Query: 330 ------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+ Y+ MI+ C + AL + + + CKP+ + + +
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASK 179
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL-GNAKERIDELL 432
+D + V REM + P T+ L L K + G A + ELL
Sbjct: 180 FEDAIRVF---REMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELL 226
>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
Length = 375
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 120/262 (45%), Gaps = 23/262 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK--DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
++L++ L ++ + A + K C + +S ++ L+HG+CK +K D A + ++ M
Sbjct: 125 NILINFLCRKGLLGRAIDILEKMPTHGC-TPNSLSYNPLLHGFCKEKKMDRAIQYLEIMV 183
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G PD V+Y + C++ L ++ KGC P +IT V+ L K +
Sbjct: 184 SRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTD 243
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
+A+++ +M+ D YSSLI LS+ + EE A+K +
Sbjct: 244 QAVELLHEMRGKGLKPDVITYSSLIAGLSREGKV--------------EE--AIKFFHDV 287
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
E KP+ T+ + C ++ ++ + M+SKG P E ++ +L E + +
Sbjct: 288 EGFGVKPNAFTYNSIMFGLCKAQQTDR---AIDFLAYMISKGCKPTEVSYTILIEGIANE 344
Query: 420 SLG-NAKERIDELLTHATEQRT 440
L A E ++EL + +++
Sbjct: 345 GLAKEALELLNELCSRGVVKKS 366
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 119/273 (43%), Gaps = 27/273 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D ++L++ + V A K+ + + C ++VL++G CK + D A K
Sbjct: 15 DVITYTILIEATCAESGVGQAMKLLDEMGSRGC-KPDVVTYNVLVNGMCKEGRLDEAIKF 73
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ M +G P+ +++ + C + + L EM KGC PSV+T I+++ L +
Sbjct: 74 LNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCR 133
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------LSKAVRFL-------------I 335
+ A+ + EKM + C ++ Y+ L+ + +A+++L
Sbjct: 134 KGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVT 193
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
YNTM+++ C + A++L ++ C P T+ + + + L+
Sbjct: 194 YNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQ---AVELLH 250
Query: 396 EMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
EM KG+ P T+ L L ++ G +E I
Sbjct: 251 EMRGKGLKPDVITYSSLIAGLSRE--GKVEEAI 281
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 22/193 (11%)
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD ++YT IE C E + L EM +GCKP V+T ++++ + K ++ EA+K
Sbjct: 14 PDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKF 73
Query: 305 YEKMKS----DDCLTDTSFYSSLIF---------ILSKAVR------FLIYNTMISSACV 345
M S + +T S+ +L++ VR + +N +I+ C
Sbjct: 74 LNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCR 133
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ G A+ + +K+ C P+ ++ L C +K+M + L + M+S+G P
Sbjct: 134 KGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEI---MVSRGCYPD 190
Query: 406 ESTHKMLAEELEK 418
T+ + L K
Sbjct: 191 IVTYNTMLTALCK 203
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 20/168 (11%)
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS 328
L EK C P VIT TI++ A + +A+K+ ++M S C D
Sbjct: 3 VLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDV----------- 51
Query: 329 KAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
+ YN +++ C A+K + +P+ TH L+ C R D
Sbjct: 52 -----VTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAE 106
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHA 435
L+ EM+ KG P T +L L +K LG A + ++++ TH
Sbjct: 107 ---KLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHG 151
>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
Length = 924
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 126/293 (43%), Gaps = 39/293 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +++ L K++ E+D + + + + + + ++D L K
Sbjct: 227 TYNTIIDGLCKAQ----------EVDRAEDVFQQMVEKGV---KPNNVTYNTIIDGLCKA 273
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A VF K D + S+ ++ +I G CK + D A+ ++M G PD V+Y
Sbjct: 274 QEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTY 333
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I+ C+ + K + ++M +KG KP +T TI++ L KA+ + A V+++M
Sbjct: 334 NTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMID 393
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC---KPD 367
+ Y+ LI + +S+ G ++ Q+I+E S +PD
Sbjct: 394 KGVKPNNGTYNCLI------------HGYLST-------GQWEEVVQRIKEMSAHDLEPD 434
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
T+ L C + + +L M+ KGI P + + ++ KK
Sbjct: 435 VFTYGLLLDYLCKNGKCNEAR---SLFDSMIRKGIKPSVTIYGIMLHGYGKKG 484
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 124/303 (40%), Gaps = 30/303 (9%)
Query: 163 YVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC--ISLSSQI--FDVL 218
+V L M V RL + + L+ L R A ++ D S S + ++++
Sbjct: 140 HVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIV 199
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
I+G+ + D A EM G SPD V+Y I+ C+ ++ + + ++M EKG
Sbjct: 200 INGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGV 256
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----- 333
KP+ +T ++ L KA+++ A V++KM Y+++I L KA
Sbjct: 257 KPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEG 316
Query: 334 --------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC 379
+ YNT+I C A + Q++ + KPD T+ + C
Sbjct: 317 VFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLC 376
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE-LEKKSLGNAKERIDELLTHATEQ 438
+ + V ++M+ KG+ P T+ L L +RI E+ H E
Sbjct: 377 KAQSVDRAEGVF---QQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEP 433
Query: 439 RTF 441
F
Sbjct: 434 DVF 436
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 102/241 (42%), Gaps = 20/241 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D ++++D L K SV A VF + D + ++ ++ LIHG+ T + + + +
Sbjct: 364 DNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRI 423
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KEM H PD +Y +++ C+ + M KG KPSV I++H K
Sbjct: 424 KEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKK 483
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ E + M ++ +S R I+NT+I + R+ + +
Sbjct: 484 GALSEMHDLLNLMVANG--------------ISPNHR--IFNTVICAYAKRAMIDEVMHI 527
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
K+++ P+ T+ + C R+ D +L N +M+++G+ P L
Sbjct: 528 FIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFN---QMINEGVTPNNVVFNSLVYG 584
Query: 416 L 416
L
Sbjct: 585 L 585
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 119/300 (39%), Gaps = 42/300 (14%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEI--DELSNGYVSLAAMSTVMRRLDTRAMSVL 184
TP +N++V L K WE V+E+ + L+ G R D + +
Sbjct: 572 TPNNVVFNSLVYGLCTVDK----WEKVEELFLEMLNQGI-----------RPDIVFFNTV 616
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
+ L K V A ++ C+ L + ++ LI G C + D A K + M G
Sbjct: 617 LCNLCKEGRVMEARRLIDSMV-CMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAG 675
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
P+ VSY + YC+ +EM KG P V T +++ L ++ + EA
Sbjct: 676 LKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEAR 735
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362
++Y M + +S Y+ ++ C + A K+ Q +
Sbjct: 736 ELYVNM-----IKSRKLWS-----------ICTYSIILDGFCKNNCFDEAFKIFQSLCSM 779
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSL 421
+ D T + R +D M +L + + G+VP T++++AE L E+ SL
Sbjct: 780 DLQLDIITFNIMIDGLFKGGRKEDAM---DLFAAIPANGLVPSVVTYRLIAENLIEEGSL 836
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L+D L K V A F + + ++ ++ +F+ L++G C K + ++ EM
Sbjct: 544 GTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLN 603
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD V + + + C+E + + M G KP VI+ ++ A ++ E
Sbjct: 604 QGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDE 663
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
A+K+ + M S + Y++L+ KA R
Sbjct: 664 AVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRI 696
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 84/217 (38%), Gaps = 16/217 (7%)
Query: 115 FCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR 174
+C + G ETYN ++ L +S +F EL YV++ R
Sbjct: 700 YCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEAREL----------YVNMIK----SR 745
Query: 175 RL-DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQ 232
+L S+++D K N A+K+F + L F+++I G K + + A
Sbjct: 746 KLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAM 805
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ +G P V+Y E+ E ++D M++ G P+ ++ L
Sbjct: 806 DLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKL 865
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
+I A K+ + + S S LI + S+
Sbjct: 866 LDRGEIPRAGAYLSKLDEKNFSLEASTTSMLISLFSR 902
>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
Length = 820
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 16/193 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ G + L++ ++ NG LAA D +VL+D L K
Sbjct: 372 TYNLLIRGQCIDGHIGSAFRLLRLME--GNG---LAA--------DQYTYNVLIDALCKT 418
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
V A +F L+++ I +S F+ +I+G CK K D A ++ M G++PD +
Sbjct: 419 GKVDEACSLFDGLEYRG-IRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYT 477
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+ FIE+ C+ K ++ + + EM +K KPS + TIV++ L + A +++ +M
Sbjct: 478 YSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMV 537
Query: 310 SDDCLTDTSFYSS 322
S C D Y++
Sbjct: 538 SQGCSPDVVTYTT 550
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 23/242 (9%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
+++ + L+ WC+ +K++ A+K + EMF G P V+ T + YCRE
Sbjct: 264 TTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVF 323
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI---- 326
+ M+ KGC+P+V T ++ A ++Y+A+ + ++M+ D Y+ LI
Sbjct: 324 ESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCID 383
Query: 327 --LSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+ A R L YN +I + C + A L +E +P+ T
Sbjct: 384 GHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTF 443
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDE 430
+ C + + + M+S G P T+ E L K K IDE
Sbjct: 444 NTVINGLCKAGKFD---VACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDE 500
Query: 431 LL 432
+L
Sbjct: 501 ML 502
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 22/223 (9%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
L+ G C + + +++M + G+ P +Y ++ +CRE+ + + L EM +
Sbjct: 235 ALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDS 294
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR---- 332
G P V+TCTIV++A + ++ A++V+E M+ C + Y++++ A +
Sbjct: 295 GLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKA 354
Query: 333 ---------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
+ YN +I C+ G+A +L + +E + D T+ +
Sbjct: 355 MALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDA 414
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C ++ + +L + +GI P T + L K
Sbjct: 415 LCKTGKVDEA---CSLFDGLEYRGIRPNSVTFNTVINGLCKAG 454
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 86/194 (44%), Gaps = 23/194 (11%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
+ ++ LI C+ +AQ+ + M + G+ PD ++ I YCR +
Sbjct: 128 TGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLF 187
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
+M +G ++ ++ +A +I EAL+++ +M D T +++L+ L A
Sbjct: 188 CKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQPDMYT----HAALVKGLCDA 243
Query: 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
R EEG L + QK++E +P +A + + C +++ ++ +
Sbjct: 244 --------------GRGEEG--LCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKI 287
Query: 391 LNLMREMLSKGIVP 404
LN EM G++P
Sbjct: 288 LN---EMFDSGLMP 298
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 82/201 (40%), Gaps = 19/201 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++LI G C A + ++ M +G + D +Y I+ C+ + ++
Sbjct: 373 YNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLE 432
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL-----SK 329
+G +P+ +T V++ L KA + A E M S DT YS I L S+
Sbjct: 433 YRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQ 492
Query: 330 AVRFLI--------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
F I Y +I+ G A ++ ++ C PD T+ S+
Sbjct: 493 EGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSV 552
Query: 376 KMCCHKKRMKDGMLVLNLMRE 396
+ C++ R+ + V+ M++
Sbjct: 553 RAYCNEGRLDEAENVVTEMKK 573
>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 137/353 (38%), Gaps = 48/353 (13%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKE----------------IDELSN-GYVSLA 167
G T T+ ++ LGK KF EL + I+ L G +LA
Sbjct: 40 GLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALA 99
Query: 168 A-----MSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIH 220
A M +L+ S L+ +L K V A +F +K KD IS + + LI
Sbjct: 100 AGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKD-ISPTIFTYTSLIQ 158
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G C + A + EM P+ V++ ++ +C+E + LK M E G +P
Sbjct: 159 GLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEP 218
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------- 333
V+T +M+ ++ EA K+++ M + C D YS LI KA R
Sbjct: 219 DVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLF 278
Query: 334 ------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
+ YNT+I C A L + + + P+ T+A L C +
Sbjct: 279 NEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQ 338
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK-SLGNAKERIDELLT 433
+ L R M S + P + +L + K +L +A+E EL
Sbjct: 339 GYLGK---AFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFV 388
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/357 (22%), Positives = 138/357 (38%), Gaps = 74/357 (20%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL 166
+V EAL F + AK + T TY ++++ L + W KE L N SL
Sbjct: 130 RVNEALDIFSYMKAKDIS---PTIFTYTSLIQGLCNFSR----W---KEASALLNEMTSL 179
Query: 167 AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK------DCISLSS-------- 212
M V+ +VL+DT K V A V D ++ +S
Sbjct: 180 NIMPNVV------TFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMW 233
Query: 213 -------QIFDV---------------LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
++FDV LI+G+CK ++ D A++ EM G +P+ VSY
Sbjct: 234 TEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSY 293
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I C+ R+ K M G P++ T I++ K + +A +++ M+S
Sbjct: 294 NTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQS 353
Query: 311 DDCLTDTSFYSSLI-------------------FILSKAVRFLIYNTMISSACVRSEEGN 351
+ Y+ L+ F++ IY T+I+ C
Sbjct: 354 TYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDE 413
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
AL+ + +E+D C PD ++ ++ KD ++L+ EM +G + T
Sbjct: 414 ALEAFRNMEDDGCPPDEFSYNVIIRGFLQH---KDESRAVHLIGEMRDRGFITDAGT 467
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 121/308 (39%), Gaps = 60/308 (19%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+T +++L++ + V + V K K + + F LI+G K K A +
Sbjct: 9 NTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELF 68
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+M G PD +YT I C+ + K+M+E GC+ +V+T + ++H+L K
Sbjct: 69 DDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKY 128
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI----------------------FILSKAVRF 333
+++ EAL ++ MK+ D Y+SLI I+ V F
Sbjct: 129 RRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTF 188
Query: 334 --------------------------------LIYNTMISSACVRSEEGNALKLRQKIEE 361
+ YN+++ + +E A KL +
Sbjct: 189 NVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMIT 248
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
CKPD +++ + C KR+ + + N EM+ +G P ++ L L + L
Sbjct: 249 KGCKPDVFSYSILINGYCKAKRIDEAKQLFN---EMIHQGSTPNNVSYNTLIHGLCQ--L 303
Query: 422 GNAKERID 429
G +E D
Sbjct: 304 GRLREAQD 311
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 96/226 (42%), Gaps = 19/226 (8%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+S ++ ++LI+ +C+ ++ D + + + G P V++T I + F +
Sbjct: 6 LSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAV 65
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+M +GC+P T T +++ L K + A +++KM+ C
Sbjct: 66 ELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGC-------------- 111
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+ + Y+T+I S C AL + ++ P T+ ++ C+ R K+
Sbjct: 112 --QLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEA 169
Query: 388 MLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
+LN EM S I+P T +L + K+ A E + + +T
Sbjct: 170 SALLN---EMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMT 212
>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
Length = 661
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 116/273 (42%), Gaps = 26/273 (9%)
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ A++ L+ +L VA A +FL+F I ++ ++ L+ G+ K A++ +
Sbjct: 256 SNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVL 315
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM Q G +PD +Y+ ++ Y R + LKEM+ G KPS + ++
Sbjct: 316 DEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDR 375
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIY 336
+ +A V +M + D FY+ +I K + +
Sbjct: 376 GEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTW 435
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT+I + C A++L ++ E +C T+ + + ++R + V ++ E
Sbjct: 436 NTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEG---VEAMLAE 492
Query: 397 MLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
M +G+VP T+ L + + G KE +D
Sbjct: 493 MKEQGLVPNIITYTTLVDVYGRS--GRFKEAVD 523
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/337 (21%), Positives = 135/337 (40%), Gaps = 45/337 (13%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEID----------------------EL 159
+Q G TY+ +V+A ++ ++ L+KE++ E
Sbjct: 319 SQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEW 378
Query: 160 SNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVL 218
+ L M R D +V++DT K N + HA F + ++ I ++ L
Sbjct: 379 QKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTL 438
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
I CK + D A + EM + +Y I E+ + V+ L EM+E+G
Sbjct: 439 IDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGL 498
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------------FI 326
P++IT T ++ ++ + EA+ E MK+D + Y +L+
Sbjct: 499 VPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALN 558
Query: 327 LSKAVRF-------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC 379
+ KA+R ++ N++I++ A + Q ++E+ +PD T+ +K
Sbjct: 559 VVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALI 618
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ + V + EM++ G P ML L
Sbjct: 619 RVEQFEK---VPVIYEEMITSGCAPDRKARAMLRSAL 652
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 14/168 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY +V+ G+S +F E V I+ AM + L++ +R
Sbjct: 504 TYTTLVDVYGRSGRFK---EAVDCIE----------AMKADGLKPSPTMYHALVNAYAQR 550
Query: 192 NSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
HA V + D + S+ + + LI+ + + R+ A ++ M ++G PD ++Y
Sbjct: 551 GLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITY 610
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
T ++ R + F KV +EM GC P ++ AL K +
Sbjct: 611 TTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSALRYMKHM 658
>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
Length = 573
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 129/289 (44%), Gaps = 32/289 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY ++V L + K +LV+E++EL G +L +++V+ + M V + V
Sbjct: 298 TYTSLVSGLCREGKVEDSMKLVEEMEEL--GLATLPTLNSVLNGFCKKGMMVEAEGWVDG 355
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
+ + + + ++ LI G+ + K A A M G SPD +Y
Sbjct: 356 MA-----------QKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYN 404
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
C I + D+R V L EM+E G K ++T +++ AL ++ +A+K+ ++M
Sbjct: 405 CLITGFTTSTDWRSVSGLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVE- 463
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+ + YN +I+ C + + A +R ++E+ + + T
Sbjct: 464 ---------------VGLEPKHRTYNAIINGFCEKGDAKGAHDIRIRMEKCKKRANVVTC 508
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
LK C +M + +VLN EML KG+VP T++++ + +K
Sbjct: 509 NVFLKYFCKMGKMDEANVVLN---EMLEKGLVPNRITYEIINSGMIEKG 554
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 215 FDVLIHG---WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
++ LI G W + K + +KEM Q G SP+ V++ I YC+E + +
Sbjct: 226 YNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFE 285
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
EM++ G +++T T ++ L + ++ +++K+ E+M+ T + S L
Sbjct: 286 EMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEMEELGLATLPTLNSVL 337
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/261 (20%), Positives = 106/261 (40%), Gaps = 28/261 (10%)
Query: 147 GLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLV----KRNSVAHAYKVFL 202
GL L E+ L+ G L + ++++R L + ++ D LV + + AY FL
Sbjct: 83 GLHSLLRSELHALAAG--RLHSPASILRALPASSRPLVADMLVLALARASQPLAAYGAFL 140
Query: 203 -KFKDCISLSSQIFDV--LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR 259
D F V L+ + + D A++A + + SPD ++ I C+
Sbjct: 141 LAGADYPRYRPSAFSVNALLAALVRADRVDLAERAFRAALRRRVSPDKFTFNIVISGLCK 200
Query: 260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK---AKQIYEALKVYEKMKSDDCLTD 316
RK K+M+ G PSV+T ++ K A ++Y + ++M +
Sbjct: 201 TGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGISPN 260
Query: 317 TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+ +N +I+ C S A+K+ +++ + + T+ +
Sbjct: 261 V----------------VTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVS 304
Query: 377 MCCHKKRMKDGMLVLNLMREM 397
C + +++D M ++ M E+
Sbjct: 305 GLCREGKVEDSMKLVEEMEEL 325
>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 686
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 97/238 (40%), Gaps = 21/238 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC--ISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D +D + K A + K ++ I + I+ +I G CK + +
Sbjct: 216 DQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNL 275
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
EM G P+ V+Y C I +C + L+EM E+ P+V+T +++A K
Sbjct: 276 FIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVK 335
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
+ +EA ++Y++M + +T + YN+MI C + A
Sbjct: 336 EGKFFEAAELYDEMLPRGIIPNT----------------ITYNSMIDGFCKQDRLDAAED 379
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ + C PD T + C KR+ DGM L+ EM +G+V T+ L
Sbjct: 380 MFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGM---ELLHEMPRRGLVANTVTYNTL 434
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 128/330 (38%), Gaps = 51/330 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYNA++ A K KF EL E+ L G + +T + ++D K+
Sbjct: 325 TYNALINAFVKEGKFFEAAELYDEM--LPRGIIP-----------NTITYNSMIDGFCKQ 371
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ + A +F + K C S F LI G+C ++ D + + EM + G + V+
Sbjct: 372 DRLDAAEDMFYLMATKGC-SPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVT 430
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y I +C D ++M G P ++TC ++ L ++ +AL++++ M+
Sbjct: 431 YNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 490
Query: 310 SDDCLTDTSF-----------YSSLIFILSKAVRFL-------------------IYNTM 339
D S Y+ LI L +FL Y++M
Sbjct: 491 KSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 550
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I C +S A ++ + S P+ T + C R+ DG L L EM
Sbjct: 551 IDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDG---LELFCEMGR 607
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERID 429
+GIV + L K +GN +D
Sbjct: 608 RGIVADAIIYITLIYGFRK--VGNINGALD 635
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 16/189 (8%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS + ++ LI+ + K K A + EM G P+ ++Y I+ +C++ +
Sbjct: 319 ISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE 378
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
M KGC P V T T ++ AK+I + +++ +M + +T
Sbjct: 379 DMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANT---------- 428
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+ YNT+I C+ + AL L Q++ PD T L C ++KD
Sbjct: 429 ------VTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDA 482
Query: 388 MLVLNLMRE 396
+ + M++
Sbjct: 483 LEMFKAMQK 491
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 93/213 (43%), Gaps = 20/213 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F L++G C+ + A + M ++G PD ++Y F++ C+ D L++M+
Sbjct: 185 FTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKME 244
Query: 275 EKG-CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
E KP+V+ + ++ L K + ++ ++ +M+ D + +++
Sbjct: 245 EISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQ------DKGIFPNIV--------- 289
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
YN MI C+ A +L Q++ E P+ T+ + + + + L
Sbjct: 290 -TYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAA---EL 345
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
EML +GI+P T+ + + K+ +A E
Sbjct: 346 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE 378
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 19/212 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ L+ + + D ++M + D S+T I+ +C T ++
Sbjct: 84 FNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLT 143
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL---------IF 325
+ G P V+T T ++H L ++ EAL ++ ++ D LT T+ + L +
Sbjct: 144 KLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVA 203
Query: 326 ILSKAVRF------LIYNTMISSACVRSEEGNALKLRQKIEEDS-CKPDCETHARSLKMC 378
+L + V + Y T + C + +AL L +K+EE S KP+ ++ +
Sbjct: 204 LLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGL 263
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
C R D NL EM KGI P T+
Sbjct: 264 CKDGRHSDSH---NLFIEMQDKGIFPNIVTYN 292
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++LI G K A++ +EM G PD ++Y+ I+ C++ + M
Sbjct: 512 YNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMG 571
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
K P+V+T +++ KA ++ + L+++ +M + D Y +LI+ K
Sbjct: 572 SKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNIN 631
Query: 335 ----IYNTMISSA 343
I+ MISS
Sbjct: 632 GALDIFQEMISSG 644
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 14/179 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L KF EL +E+ G V DT S ++D L K+
Sbjct: 511 TYNILICGLINEGKFLEAEELYEEMPH--RGIVP-----------DTITYSSMIDGLCKQ 557
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ + A ++F+ S + F+ LI+G+CK + D + EM + G D + Y
Sbjct: 558 SRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIY 617
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
I + + + +EM G P IT ++ +++ A+ + E ++
Sbjct: 618 ITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 676
>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
Length = 716
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 88/427 (20%), Positives = 163/427 (38%), Gaps = 94/427 (22%)
Query: 66 WVESLKLNEQSRISSHALSED---HETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKT 122
+ E L+L + I ++ D E VD+ +++LR+ P
Sbjct: 219 YAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPG---------------- 262
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI-----------DELSNGYVSLAAMST 171
G + + TYN ++ L + + +LV + + L GY + ++
Sbjct: 263 --GCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEK 320
Query: 172 VMRRLDTRAMSVLMDTLVKRNSVAH----------AYKVFLKFKDCISLSSQI-FDVLIH 220
++ T+V N++ H A F++ + L I ++ LI+
Sbjct: 321 AGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLIN 380
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G+CK A ++ + G +P ++Y ++ YCR D + +EM E+GC+P
Sbjct: 381 GYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQP 440
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKS----DDCLTDTSFYSSLIFILSKAVRF--- 333
V T TI+M+ K + + + +++M S DC + S+ + + S + F
Sbjct: 441 DVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLT 500
Query: 334 ------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
+ YN + C +A L K+ D +PDC T+ + C +
Sbjct: 501 EVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCER 560
Query: 382 KRMK------DGMLVLNL--------------------------MREMLSKGIVPQESTH 409
R++ DGMLV L ++ML +G+ P E T+
Sbjct: 561 GRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTY 620
Query: 410 KMLAEEL 416
+L L
Sbjct: 621 NVLIHAL 627
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 92/230 (40%), Gaps = 23/230 (10%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS + +++ + G CK+ A +M G PD ++YTC I +C R+
Sbjct: 508 ISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREAR 567
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
M G PS +T T+ +HA + +Y A ++KM L
Sbjct: 568 DIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKM------------------L 609
Query: 328 SKAVRF--LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
+ VR + YN +I + C A + ++ E P+ T+ + C + +
Sbjct: 610 EEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWE 669
Query: 386 DGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA 435
+ + L EM GI P TH L + ++ +A + ++ ++ A
Sbjct: 670 E---AIRLYSEMHQHGIHPDHCTHNALFKGFDEGQSKHAIQYMENVVLGA 716
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 105/269 (39%), Gaps = 59/269 (21%)
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK--GCKPSVITCT 286
D + EM Q G P V+Y ++ + RE + L+EM+ + GC PS +T
Sbjct: 213 DDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYN 272
Query: 287 IVMHA------LEKAKQIYEALKVYEK----------------------------MKSDD 312
+V++ LEKA Q+ + +++ +K M+++
Sbjct: 273 VVINGLARKGELEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEG 332
Query: 313 CLTDTSFYSSLI---------------FILSKAVRFL----IYNTMISSACVRSEEGNAL 353
+ Y+++I F+ +A+ L YN++I+ C AL
Sbjct: 333 IVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEAL 392
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
L ++ P T+ L C R+ D +EM+ +G P ST+ +L
Sbjct: 393 WLFGDLKRAGLAPSVLTYNILLDGYC---RLGDLEEARRFKQEMVEQGCQPDVSTYTILM 449
Query: 414 EELEK-KSLGNAKERIDELLTHATEQRTF 441
K ++L +E DE+L+ + F
Sbjct: 450 NGSRKVRNLAMVREFFDEMLSKGLQPDCF 478
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 46/189 (24%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF------KDCISLSSQIFDVLIHGWCKTRKSDY 230
DT ++ +D L K ++ AY +++K DCI+ + LIH C+ +
Sbjct: 511 DTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCIT-----YTCLIHAHCERGRLRE 565
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD-------FRK----------VDYTL--- 270
A+ M G P V+YT FI YCR + F+K V Y +
Sbjct: 566 ARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIH 625
Query: 271 ---------------KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315
EM E+G P+ T T+++ K EA+++Y +M
Sbjct: 626 ALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHP 685
Query: 316 DTSFYSSLI 324
D +++L
Sbjct: 686 DHCTHNALF 694
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 106/460 (23%), Positives = 183/460 (39%), Gaps = 97/460 (21%)
Query: 44 SWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYP 103
S L++ + SP D P+ + ++ ++ + SH E+ ++ L KR
Sbjct: 25 SPLQYLNATSPKPD--PPATEATTTMVEPRKKPKFISH------ESAIN-----LIKRET 71
Query: 104 SPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKF----------------- 146
P + +E F Q G+ H TY ++ L KSKKF
Sbjct: 72 DPQRALE-----IFNRVAEQRGFSHNNATYATILHKLAKSKKFQAIDAVLHQMTYETCKF 126
Query: 147 --GLMWELVKEIDELS--NGYVSL--AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKV 200
G+ L+K +LS V + A V + +A+S ++ LV+ N V K
Sbjct: 127 HEGIFLNLMKHFSKLSLHERVVEMFDAIRPIVREKPSLKAISTCLNLLVESNQVDLTRKF 186
Query: 201 FLKFKDCISLSSQ--IFDVLIHGWCKTRKSDYAQKAMKEMFQ-HGFSPDGVSYTCFIEHY 257
L K ++L IF++L+ CK D A + ++EM + H P+ ++Y+ I
Sbjct: 187 LLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGL 246
Query: 258 CREKDFRKVDYTLKEMQEKG-CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316
C ++ +EM K P +T +++ +++ ALK+ E MK + C +
Sbjct: 247 CGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPN 306
Query: 317 TSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQ 357
YS+L+ K R + Y T+I+ C A++L +
Sbjct: 307 VFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLK 366
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKD--GML-----------------VLN-LMRE- 396
+ E+ C+ D T L C + R ++ GML VLN L RE
Sbjct: 367 DMRENKCRADTVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREG 426
Query: 397 -----------MLSKGIVPQEST-HKMLAEELEKKSLGNA 424
ML +G++P +T +++L E +G+A
Sbjct: 427 ELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDA 466
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/324 (21%), Positives = 142/324 (43%), Gaps = 37/324 (11%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
+N +V+ K+ +E+V+E+ + Y +L ST L++ L
Sbjct: 203 FNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYST------------LINGLCGSG 250
Query: 193 SVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A ++F + KD I + ++ LI+G+C K D A K M+ M ++G +P+ +Y
Sbjct: 251 RLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNY 310
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ + +C+E + EM+ G KP + T +++ +A ++ EA+++ + M+
Sbjct: 311 SALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRE 370
Query: 311 DDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGN 351
+ C DT ++ ++ L + RF Y +++S C E
Sbjct: 371 NKCRADTVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQK 430
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A +L + P T L C ++ D ++ L + E+ G P+ ++ +
Sbjct: 431 ATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLGLLEL---GFKPEPNSWAL 487
Query: 412 LAEEL-EKKSLGNAKERIDELLTH 434
L E + ++ L A E +D+L+
Sbjct: 488 LVELICRERKLLPAFELLDDLVIQ 511
>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
Length = 455
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 107/240 (44%), Gaps = 22/240 (9%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
++++ +++L+H + A + ++EM G +PD +Y I +C+E + +K
Sbjct: 175 VAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKAL 234
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ M +G + +V+T T +++AL K Q+ E K++++ D Y++LI
Sbjct: 235 EIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSH 294
Query: 328 SKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
S + + YNT++ C+ A KL ++ + +PD
Sbjct: 295 STSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDL 354
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
T+ + K +KD + + N EM++KG P T+ L + L K G+ E +
Sbjct: 355 VTYNTLISGYSMKGDVKDALRIRN---EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENM 411
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 120/295 (40%), Gaps = 33/295 (11%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G T TYN +V AL + +ELV+E+ G LA D +
Sbjct: 172 ERGVAMTVATYNLLVHALFMDGRGTEAYELVEEM-----GGKGLAP--------DVFTYN 218
Query: 183 VLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+L++ K +V A ++F + + + + LI+ K + K E +
Sbjct: 219 ILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRR 278
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD V Y I + + + + EM++K P +T +M L ++ EA
Sbjct: 279 GIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEA 338
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
K+ ++M D + YNT+IS ++ + +AL++R ++
Sbjct: 339 RKLIDEMTKRGIQPD----------------LVTYNTLISGYSMKGDVKDALRIRNEMMN 382
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
P T+ ++ C + D N+++EM+ GI P +ST+ L E L
Sbjct: 383 KGFNPTLLTYNALIQGLCKNGQGDDAE---NMVKEMVENGITPDDSTYISLIEGL 434
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 112/297 (37%), Gaps = 60/297 (20%)
Query: 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDY 230
M R + + ++ R V A + ++ + I+ + + +I GWCK + D
Sbjct: 67 MPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDE 126
Query: 231 AQKAMKEMFQHG-FSPDGVSYTCFIEHYCREKDF------------RKVDYT-------- 269
A K EM G P+ V Y I YC + R V T
Sbjct: 127 AVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLV 186
Query: 270 ---------------LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
++EM KG P V T I+++ K + +AL+++E M
Sbjct: 187 HALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVR 246
Query: 315 TDTSFYSSLIFILSK-------------AVR------FLIYNTMISSACVRSEEGNALKL 355
Y+SLI+ LSK AVR ++YN +I+S A ++
Sbjct: 247 ATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEI 306
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
++E+ PD T+ ++ C R+ + L+ EM +GI P T+ L
Sbjct: 307 MGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR---KLIDEMTKRGIQPDLVTYNTL 360
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
++ G T TY +++ AL K + V+E D+L + V R R
Sbjct: 241 SRRGVRATVVTYTSLIYALSKKGQ-------VQETDKLFDEAV----------RRGIRPD 283
Query: 182 SVLMDTLVKRNS----VAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
VL + L+ +S + A+++ + K I+ ++ L+ G C + D A+K +
Sbjct: 284 LVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLID 343
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM + G PD V+Y I Y + D + EM KG P+++T ++ L K
Sbjct: 344 EMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 403
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLI 324
Q +A + ++M + D S Y SLI
Sbjct: 404 QGDDAENMVKEMVENGITPDDSTYISLI 431
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 26/221 (11%)
Query: 195 AHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A A+ +F F+ + L + F++++ C K A + +++M + P+ V+Y
Sbjct: 23 APAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTV 78
Query: 254 IEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I +C + ++EM+E+ G P+ T V+ K ++ EA+KV+++M
Sbjct: 79 IAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEM---- 134
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
LT + +YN +I C + + AL R ++ E T+
Sbjct: 135 -LTKGEVKPEAV----------MYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATY- 182
Query: 373 RSLKMCCHKKRMKD-GMLVLNLMREMLSKGIVPQESTHKML 412
+ H M G L+ EM KG+ P T+ +L
Sbjct: 183 ---NLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNIL 220
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 24/158 (15%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMSTVMRRLDTRA 180
YNA++ + S +E++ E+++ L G L + + +D
Sbjct: 287 YNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMT 346
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSD 229
+ LV N++ Y + KD + + +++ ++ LI G CK + D
Sbjct: 347 KRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGD 406
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
A+ +KEM ++G +PD +Y IE E D R +D
Sbjct: 407 DAENMVKEMVENGITPDDSTYISLIEGLTTE-DERAID 443
>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 524
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 111/247 (44%), Gaps = 24/247 (9%)
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
++V+M + + N H + + K + + S + ++I CK + D A EM
Sbjct: 279 NVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHS--YTIIIKRLCKIKMVDEALSLFNEM 336
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
G +PD V+Y+ I+ C+ + L +M +G VIT T +HAL K Q+
Sbjct: 337 RCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQV 396
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------LI---------YNTM 339
+A+ + +K+K + + Y+ LI L K RF LI YN M
Sbjct: 397 DKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIM 456
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I+ C+ A+ L +K+E++ C PD T+ ++ L+REM++
Sbjct: 457 INGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYETIIRALFKNDENHKAE---KLLREMIA 513
Query: 400 KGIVPQE 406
+G++ ++
Sbjct: 514 RGLLEEK 520
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 80/371 (21%), Positives = 152/371 (40%), Gaps = 22/371 (5%)
Query: 80 SHALSEDHETDV-DKVSEILR--KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAM 136
SH+ + DV D +S R + PSP ++E K Y Y+ +
Sbjct: 16 SHSKFNSNHVDVHDAISSFYRMLRMNPSPS-IIEFNKILGSLVKSNNNNYPIAISLYHRL 74
Query: 137 -VEALGKS-KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSV 194
+ A+ S F + + E+ + LA + + DT ++ L+ L V
Sbjct: 75 QLNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKV 134
Query: 195 AHAYKVFLKFKDCI-----SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
A L F D + L+ + +LI+G CK ++ A + ++++ + + V
Sbjct: 135 HEA----LHFHDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVM 190
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+ I+ C+EK + +M K P V+T + +++ Q EA ++ +M
Sbjct: 191 YSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMV 250
Query: 310 SDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK-LRQKIEEDSCKPDC 368
+ D ++ L+ L K +++ + N K + I + PD
Sbjct: 251 LTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDV 310
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKER 427
++ +K C K + + L+L EM KGI P + T+ L + L + + + +A E
Sbjct: 311 HSYTIIIKRLCKIKMVDEA---LSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWEL 367
Query: 428 IDELLTHATEQ 438
+D++ HA Q
Sbjct: 368 LDQM--HARGQ 376
>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 418
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 130/314 (41%), Gaps = 44/314 (14%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W +E L GY + ++LM + VK
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWGFYEE--SLECGYPA-----------SLYFFNILMHSFVK 148
Query: 191 RNSVAHAYKVFLKFKDCI---SLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+ A VF D I SL + F+ L++G+ K D + M G P
Sbjct: 149 EGEIRLAQSVF----DAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQP 204
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D +Y+ I C+E + EM + G P+ +T T ++ K ++ A+++Y
Sbjct: 205 DVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIY 264
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVR 346
++M S D Y++LI+ L K + Y T+I C
Sbjct: 265 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKE 324
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
+ A + R+K+ +++ + D + + C + R D ++REMLS G+ P+
Sbjct: 325 GDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLKPEI 381
Query: 407 STHKMLAEELEKKS 420
T+ M+ E KK
Sbjct: 382 GTYTMIINEFCKKG 395
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/388 (23%), Positives = 155/388 (39%), Gaps = 60/388 (15%)
Query: 51 TQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVE 110
TQ D + +++ES L + I + L+++H+ R + + KV+E
Sbjct: 61 TQRSDIYVFSGLITAYLESGFLRDA--IECYRLTKEHK---------FRVPFDTCRKVLE 109
Query: 111 ---ALKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM---------WEL-- 152
LK F W + GY + +N ++ + K + L W L
Sbjct: 110 HLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRP 169
Query: 153 -VKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF 201
V + L NGY+ L AM + D SVL++ L K + + A ++F
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELF 229
Query: 202 LKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
+ D + + + F LI G CK + D A + K+M SPD ++Y I C++
Sbjct: 230 DEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 289
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
D ++ + EM KG KP IT T ++ K + A + +KM ++ D Y
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAY 349
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
++L IS C +A K+ +++ KP+ T+ + C
Sbjct: 350 TAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQEST 408
K + G L++EM G +P T
Sbjct: 394 KGDVWTGS---KLLKEMQRDGYMPSVVT 418
>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
Length = 924
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 22/218 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LIHG+ + A++ + +M G +P+ Y +E Y + + KV TLK M
Sbjct: 561 YGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSML 620
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILS 328
EKG P IV+H L + + A+ V ++ + + D+ Y SLI +
Sbjct: 621 EKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADME 680
Query: 329 KAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
KAV L YN +I C + +A + I P+C T+ +
Sbjct: 681 KAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLI 740
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
C ++D ++L EML++G+ P + +LA
Sbjct: 741 DGYCKAGDIRD---AIDLYNEMLTEGVAPDAFVYSVLA 775
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 146/350 (41%), Gaps = 36/350 (10%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTG-YMHTPETYNAMVEALGKSKKFGLMWEL 152
+S +LR+ SP + L F F W++T+ P+ + + +L + GL +
Sbjct: 84 LSSLLRRCNSSPRLHPKLLLDF-FYWSRTRLAPSAPAPDAFAHLAVSLCAA---GLYPQA 139
Query: 153 VKEIDELSNGYVSLA-AMSTVMRRLDTR-------AMSVLMDTLVKRNSVAHAYKVFLKF 204
+D++ Y + +S+V R L + VL+DT K V +V L
Sbjct: 140 NGLLDQMIRAYPTPPLVLSSVHRALSGSDQGRRPVVLDVLVDTYKKTGRVRDGAEVVLLM 199
Query: 205 KDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263
KD ++ S + + L+ + D K M G SPD +Y+ IE YC+ +D
Sbjct: 200 KDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFMEGAGISPDVYTYSTLIEAYCKVRDL 259
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
++EM+E GC +V+T ++ L +A I EA ++M+ + D Y ++
Sbjct: 260 ESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAI 319
Query: 324 IFILSKAVR-------------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
I L K R ++Y+T+I + A K+ +++
Sbjct: 320 INGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGV 379
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+P+ T+ ++ C RM +L ++M G + T+ ++ E
Sbjct: 380 QPNKITYDNLIRGLCKLGRMGRASRIL---KQMTKIGYMADTMTYNLVIE 426
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 133/319 (41%), Gaps = 38/319 (11%)
Query: 117 FTWAKTQTGYMHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR 174
F + K Y P+ TY A++ L K + L+ E MS
Sbjct: 298 FGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDE-------------MSCAGL 344
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQK 233
+ S L+D +++ + A+K+ + ++I +D LI G CK + A +
Sbjct: 345 MPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASR 404
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
+K+M + G+ D ++Y IE + R+ + + L EM++ G P+V T +I+++ L
Sbjct: 405 ILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLC 464
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
+ + A + E+M +D L +F +Y +IS C A
Sbjct: 465 QIGESERASGLLEQMIADG-LKPNAF---------------VYAPLISGYCREGSFSLAC 508
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
+ +K+ ++ PD + + + +M + + EML KG P + T+ L
Sbjct: 509 ETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDE---AIEYYDEMLEKGFQPNDFTYGGL- 564
Query: 414 EELEKKSLGNAKERIDELL 432
+ S+ E+ ++LL
Sbjct: 565 --IHGYSMAGNLEKAEQLL 581
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/272 (20%), Positives = 105/272 (38%), Gaps = 36/272 (13%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D R +++ L + A V K+ + S I+ LI G+CK + A +
Sbjct: 627 DNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLL 686
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM + G P Y I+ +C+ D + KG P+ +T T ++ KA
Sbjct: 687 DEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKA 746
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSL-------------IFILSKAVR--FLI---YN 337
I +A+ +Y +M ++ D YS L +FI + + + I +N
Sbjct: 747 GDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIISSFN 806
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPD-----------------CETHARSLKMCCH 380
T++ C R + +K + + P E H +++
Sbjct: 807 TLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQK 866
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+D + +L +M+++G+VP + H M+
Sbjct: 867 NASHRDTDHLSSLFTDMINQGLVPLDVIHNMI 898
>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
Length = 475
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 66/108 (61%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
V++ G+CK+ + +A++ + EM +HG + + Y ++ Y REKD +V LK M+ +
Sbjct: 72 VVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENE 131
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G +P+V T TI++ L A+ I + V+E+MKS + D FYSS+I
Sbjct: 132 GIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVI 179
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 105/249 (42%), Gaps = 20/249 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKV-FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ ++D ++N V A ++ + K I L ++ L G + + D A+ ++ M +
Sbjct: 246 NTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIE 305
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ VSYT I +C E D + +EM G +PS++T ++M K I E
Sbjct: 306 KGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIRE 365
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A + +M+ + D Y++L+ CV + AL+L ++++
Sbjct: 366 AERFKNEMEKKGLVPDIYSYAALVH----------------GHCVNGKVDVALRLFEEMK 409
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ KP+ + + + R ++ L ML G+ P ++ + L L
Sbjct: 410 QRGSKPNLVAYTALISGLAKEGRSEE---AFQLYDNMLGDGLTPDDALYSALVGSLHTDK 466
Query: 421 LGNAKERID 429
N K R +
Sbjct: 467 KQNVKPRTN 475
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 109/251 (43%), Gaps = 23/251 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
SV++D K VAHA ++ + + + +++ ++ L+ + + + D + +K M
Sbjct: 71 SVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMEN 130
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P +YT ++ +D KV+ +EM+ K V + V++A +A +
Sbjct: 131 EGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRR 190
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIYNTMIS 341
A +V+++ + + Y +LI K + +++NTMI
Sbjct: 191 ASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMID 250
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C ++ AL+++ +E+ + D T+ + C +R NL+R M+ KG
Sbjct: 251 GYCRKNMVDKALEIKMIMEKMGIELDVYTYN---TLACGLRRANRMDEAKNLLRIMIEKG 307
Query: 402 IVPQESTHKML 412
+ P ++ L
Sbjct: 308 VRPNHVSYTTL 318
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 23/259 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
S +++ + +V A +VF + + I + + LI+G+CK + + A+ + +M
Sbjct: 176 SSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQV 235
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G + + + I+ YCR+ K M++ G + V T + L +A ++ E
Sbjct: 236 RGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDE 295
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFI------LSKAVR-------------FLIYNTMIS 341
A + M + Y++LI I + +A R + YN M+
Sbjct: 296 AKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMD 355
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
+ A + + ++E+ PD ++A + C ++ + L L EM +G
Sbjct: 356 GYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVD---VALRLFEEMKQRG 412
Query: 402 IVPQESTHKMLAEELEKKS 420
P + L L K+
Sbjct: 413 SKPNLVAYTALISGLAKEG 431
>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 131/326 (40%), Gaps = 40/326 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVK---------EIDELSNGYVSLAAMSTVMRR 175
G + + Y ++ G+ GL+ + + + G+V + R
Sbjct: 115 GALAKKKQYLHVISMCGRMNSIGLLKNFISLNILLNCLCSVKRVFEGFVVFGMILRKGYR 174
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQK 233
+TR + L+ L + A +VF + DC S+ VLI G C+T + A K
Sbjct: 175 PNTRTFTNLVKGLCLEGKIGEAVRVFKIMGVFDC-RPSAITCGVLISGLCRTGNTCNALK 233
Query: 234 AMKEM------FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
+ M F P VSY+C I+ C++ + EM+EKG P+V+T T
Sbjct: 234 LHEAMINGNSDFGINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTS 293
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV--------------RF 333
++H L A + EA +++ +M L D +S LI L K R+
Sbjct: 294 LLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRY 353
Query: 334 L-----IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
+ YN +I C+ K+ + C+ D +++ +K C + M
Sbjct: 354 VEPSTRTYNILIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAM 413
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAE 414
+ L REM+ +GI P T+ + +
Sbjct: 414 I---LYREMMDRGIQPTVITYSKVGD 436
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDY 230
V+ + +V +D L K V+ A VF ++C + + IF+ LI+G C++ K +
Sbjct: 450 VLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCRSEKLEI 509
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A + + PD V+YT I C+ +K EM+EKGC P+V+T +M
Sbjct: 510 AWELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMR 569
Query: 291 AL 292
L
Sbjct: 570 GL 571
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 119/291 (40%), Gaps = 53/291 (18%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D SVL+ L K V A +F L + + S++ +++LI G+C D +K
Sbjct: 322 DVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIF 381
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT--------- 286
M D SY+ ++ YC++ + +EM ++G +P+VIT +
Sbjct: 382 LSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYSKVGDARKLF 441
Query: 287 -------------------IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ + L K + EAL V+ +++ ++ + ++SLI +
Sbjct: 442 GEIQFQDMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGM 501
Query: 328 SKAVRFLI-------------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
++ + I Y MI C + A L ++EE C P+
Sbjct: 502 CRSEKLEIAWELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPNV 561
Query: 369 ETHARSLK-MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
T ++ +C + +R K ++ L+ +M ++ + P ST ++ + L K
Sbjct: 562 VTFNTLMRGLCLNSERPK----IVELLHKMAARKLSPDASTLLIVMDILLK 608
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ ++I+G CK + A EM + G +P+ V++ + C + K+ L +M
Sbjct: 529 YTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGLCLNSERPKIVELLHKMA 588
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKV 304
+ P T IVM L K + +E L +
Sbjct: 589 ARKLSPDASTLLIVMDILLKDENYHECLNL 618
>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 29/213 (13%)
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK- 271
Q +++LI G+CK +K D A KEM PD V+Y I+ C+ K+ Y LK
Sbjct: 338 QSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCK---LGKISYALKL 394
Query: 272 --EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
EM ++G P +IT + ++ AL K Q+ +A+ + K+K + Y+ LI L K
Sbjct: 395 VDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCK 454
Query: 330 AVRF----------LI---------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
R L+ Y MI C + AL L K++++SC PD T
Sbjct: 455 GGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVT 514
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
+ ++ K +REM+++G++
Sbjct: 515 YEIIIRSLFDKDENDKA----EKLREMITRGLL 543
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 99/220 (45%), Gaps = 20/220 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F++L+ G+CK K + M + G P+ V+Y ++ YC K+ K L M
Sbjct: 270 FNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMS 329
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
++G P + + I++ K K++ EA+ ++++M + D +
Sbjct: 330 QRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDV----------------V 373
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN++I C + ALKL ++ + PD T++ L C ++ + +L +
Sbjct: 374 TYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKL 433
Query: 395 REMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLT 433
++ +GI P T+ +L + L K L +A ++LL
Sbjct: 434 KD---QGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLV 470
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 104/237 (43%), Gaps = 23/237 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LIHG CK ++ A ++ + + P+ V Y+ I+ C++K EM
Sbjct: 165 YGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMV 224
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
KG P+V+T + ++ Q+ +A+ ++ KM ++ D ++ L+
Sbjct: 225 SKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMK 284
Query: 325 -------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++ + ++ + Y +++ C+ E A + + + PD +++ +
Sbjct: 285 EGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILI 344
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDEL 431
C K++ + M NL +EM K I+P T+ L + L K + A + +DE+
Sbjct: 345 DGFCKIKKVDEAM---NLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEM 398
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 89/214 (41%), Gaps = 49/214 (22%)
Query: 152 LVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK------FK 205
LVKE+++ + L MS D ++ ++L+D K V A +F +
Sbjct: 314 LVKEVNKAKS---ILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIP 370
Query: 206 DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
D ++ +S LI G CK K YA K + EM G PD ++Y+ ++ C+ K
Sbjct: 371 DVVTYNS-----LIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDK 425
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHAL------EKAKQIYE------------------- 300
L +++++G +P++ T TI++ L E A I+E
Sbjct: 426 AIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIH 485
Query: 301 ----------ALKVYEKMKSDDCLTDTSFYSSLI 324
AL + KMK + C+ D Y +I
Sbjct: 486 GFCNKGLFDEALALLSKMKDNSCIPDAVTYEIII 519
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 19/195 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F LI G C + A + GF D V Y I C+ + R L+ +
Sbjct: 130 FTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVD 189
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+P+V+ + ++ + K K + +A +Y +M S + YS+L
Sbjct: 190 GNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSAL----------- 238
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
IS + +A+ L K+ ++ KPD T + C +MK+G V +
Sbjct: 239 -----ISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAM- 292
Query: 395 REMLSKGIVPQESTH 409
M+ +GI P T+
Sbjct: 293 --MMKQGIKPNVVTY 305
>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
Length = 821
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 17/207 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++++D K ++ A + + + + IS + F+ LI+G+CK K A K + +
Sbjct: 511 NIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKV 570
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
HG P V+YT + YC E D + L EM+ K KP+ IT T+V+ L K +++E
Sbjct: 571 HGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHE 630
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
++++ + M + D + YNT+I S C + A +L ++
Sbjct: 631 SVQLLKYMYARGLFPDQ----------------ITYNTVIQSFCKAHDLQKAFQLHNQML 674
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDG 387
+ S +P T+ + C +KD
Sbjct: 675 QHSLQPSPVTYNVLINGLCVYGNLKDA 701
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 95/237 (40%), Gaps = 31/237 (13%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ L+ G+CK D A+ M ++G PD SY + C + +M+
Sbjct: 273 FNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDME 332
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF--------- 325
G +P ++T I+ + I A KV ++M + D Y+ LI
Sbjct: 333 NHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIE 392
Query: 326 --------ILSKAVRFLI--YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+LS+ ++ I Y ++SS C A+ L ++E KPD T++R
Sbjct: 393 ESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSRG- 451
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST-HKMLAEELEKKSLGNAKERIDEL 431
+++ + L EM SK I P +++ EK ++ A+ D +
Sbjct: 452 -------AVEEA---IELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSV 498
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 92/223 (41%), Gaps = 27/223 (12%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
+LI G C+ + A ++E F P VS+ + +C+ M +
Sbjct: 240 ILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKY 299
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336
G P V + I++H L A + EAL+ M++ D Y+ IL+ R L
Sbjct: 300 GLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYN----ILANGFRIL-- 353
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
+IS A K+ Q++ + PD T+ ++ +C H + M + L +
Sbjct: 354 -GLISG---------AWKVVQRMLLNGLNPDLVTY--TILICGHCQ-MGNIEESFKLKEK 400
Query: 397 MLSKGIVPQESTHKMLAEELEKKSLGNAKERIDE--LLTHATE 437
MLS+G+ T+ +L L K RIDE +L H E
Sbjct: 401 MLSQGLKLSIVTYTVLLSSLCKSG------RIDEAVILLHEME 437
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/228 (18%), Positives = 101/228 (44%), Gaps = 20/228 (8%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
+S + +I G + AQ + + + + + Y I+ Y + + + +
Sbjct: 471 NSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSY 530
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
K++ EKG P+++T +++ K ++ EA+K+ + +K L TS
Sbjct: 531 KQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHG-LVPTS------------ 577
Query: 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
+ Y T+++ C + + + ++E + KP T+ +K C + R+ +
Sbjct: 578 ---VTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHES--- 631
Query: 391 LNLMREMLSKGIVPQESTHKMLAEELEKK-SLGNAKERIDELLTHATE 437
+ L++ M ++G+ P + T+ + + K L A + +++L H+ +
Sbjct: 632 VQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQ 679
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/292 (20%), Positives = 120/292 (41%), Gaps = 41/292 (14%)
Query: 159 LSNGYVSLAAMST---VMRRL-------DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDC 207
L+NG+ L +S V++R+ D ++L+ + ++ ++K+ K
Sbjct: 346 LANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQG 405
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ LS + VL+ CK+ + D A + EM G PD ++Y+ +
Sbjct: 406 LKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYS--------RGAVEEAI 457
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+EM K P+ C+ ++ L + I EA ++ + D + Y+ +I
Sbjct: 458 ELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGY 517
Query: 328 SK------AVR-------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
+K AVR + +N++I C + + A+KL I+ P
Sbjct: 518 AKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTS 577
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
T+ + C + M + +++ EM +K I P + T+ ++ + L K+
Sbjct: 578 VTYTTLMNGYCEEGDMHS---MFDMLHEMEAKAIKPTQITYTVVVKGLCKEG 626
>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 17/233 (7%)
Query: 97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI 156
IL Y K+ EA + F K G + TYN ++ AL +S + +L E
Sbjct: 326 ILINGYCKDQKIDEAFRLFEEMRPK---GLKPSTVTYNTLIGALCQSGRVRTAQKLFVE- 381
Query: 157 DELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS-QIF 215
M T + L VL+D L K + A +F K + ++F
Sbjct: 382 ------------MQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVF 429
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+L+ G C+ K + A K E+ ++G PD ++Y I C + + L +M+E
Sbjct: 430 SILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEE 489
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS 328
KGC P IT +++ L K +I+EA+++ E+M++ + D + S L+ + S
Sbjct: 490 KGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLAS 542
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 109/256 (42%), Gaps = 23/256 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + LM+ L + A K+F D I L+ +++LI+G+CK +K D A +
Sbjct: 285 DILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLF 344
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM G P V+Y I C+ R EMQ G + T +++ L K
Sbjct: 345 EEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKN 404
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIY 336
+ EA+ +++ +K + + +S L+ + +A + + Y
Sbjct: 405 GHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAY 464
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N +I+ C + A+KL ++EE C PD T ++ + + + + L+ E
Sbjct: 465 NILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHE---AIQLLEE 521
Query: 397 MLSKGIVPQESTHKML 412
M ++ P E+ ML
Sbjct: 522 MRNRNFSPDEAVTSML 537
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/330 (23%), Positives = 134/330 (40%), Gaps = 43/330 (13%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE---------------IDELSNGYVSL 166
T+ G +TY ++ L K++K GL +L ++ ID L ++
Sbjct: 104 TEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDSLCKDGMTT 163
Query: 167 AAMSTVMRRL------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLI 219
A+ + D S LMD L + + A + F + + IS ++ LI
Sbjct: 164 EALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLI 223
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
HG + + M GFSPD ++T I+ C+E + L+ M KG +
Sbjct: 224 HGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKE 283
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTM 339
P ++T +M+ L Q+ +A K++E + +D + F YN +
Sbjct: 284 PDILTYNTLMNGLCLVGQLEDATKLFESL-ADRGIKLNVFS---------------YNIL 327
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I+ C + A +L +++ KP T+ + C R++ L EM +
Sbjct: 328 INGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQ---KLFVEMQT 384
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERID 429
G + ST+ +L + L K G+ +E ID
Sbjct: 385 CGQFLKLSTYCVLLDGLCKN--GHLEEAID 412
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 22/226 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F +LI G CK K AQ+ ++ M G PD ++Y + C + +
Sbjct: 254 FTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLA 313
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
++G K +V + I+++ K ++I EA +++E+M+ T Y++LI L ++ R
Sbjct: 314 DRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVR 373
Query: 333 --------------FL---IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
FL Y ++ C A+ L Q I++ KP+ E + L
Sbjct: 374 TAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILL 433
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
C ++++ + E+ G+ P + +L L K +
Sbjct: 434 DGMCRAGKLEEAWKQFD---EISKNGLEPDTIAYNILINGLCNKGM 476
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 20/183 (10%)
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
+ GF PD V+ T ++ E EM EKG T I+++ L KA++
Sbjct: 69 LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKT 128
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK 358
A+K++EKMK +C D Y +I S C AL + +
Sbjct: 129 GLAIKLHEKMKG-NCKGDV----------------FTYGMIIDSLCKDGMTTEALDMFSE 171
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
+ PD ++ + C R+K+ L +EM +GI T+ L L +
Sbjct: 172 MIGAGILPDVVVYSSLMDGLCRFGRLKE---ALEFFKEMEGRGISADVYTYNSLIHGLSR 228
Query: 419 KSL 421
L
Sbjct: 229 AGL 231
>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
Length = 647
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 25/268 (9%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+DTR + L++ L K + A + L C S F V+I+G C+ ++ D A +
Sbjct: 7 VDTRVCTALLNGLCKTGQLDRAM-LLLDEMPC-SPDMVAFTVVINGLCREKRLDEAFSVL 64
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ + G PD V+Y FI+ C+ + LK+M EK C P+ +T T ++ L KA
Sbjct: 65 ERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKA 124
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ EA+ + E+M Y+ +I LSKA R EE A ++
Sbjct: 125 GRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRV--------------EE--ARRI 168
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE-MLSKGIVPQESTHKMLAE 414
+ + C+PD + + ++ + ++ LN M E ++G+ P H ++
Sbjct: 169 FVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIR 228
Query: 415 EL-EKKSLGNAKERIDEL-----LTHAT 436
+L +L +A DEL LTH T
Sbjct: 229 QLCASGNLEDALAYFDELDDSLDLTHFT 256
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 128/304 (42%), Gaps = 48/304 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE-----LSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TYN ++ L K+++ ++L+K++DE + Y +L RLD AM++L
Sbjct: 78 TYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLD-EAMAILEQ 136
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
+ K NS + + + V+I G K + + A++ +M +G PD
Sbjct: 137 MVEKGNSP----------------TLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPD 180
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC----KPSVITCTIVMHALEKAKQIYEAL 302
YT I + + L +M E GC +P V+ +V+ L + + +AL
Sbjct: 181 AFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDAL 240
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362
++++ DD L T F +N ++++ C A+ +K+ E
Sbjct: 241 AYFDEL--DDSLDLTHF---------------TFNPLVAALCKAERTEEAIAFVKKMSER 283
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLG 422
C P T+ + R+ + +L L +E + +G +P T+ + + L K LG
Sbjct: 284 RCFPTLFTYTSLVDGFLKLGRLDEALLQL---KEAVERGFIPDAVTYTSIIDGLCK--LG 338
Query: 423 NAKE 426
+E
Sbjct: 339 RVEE 342
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 124/310 (40%), Gaps = 45/310 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELS-----NGYVSLAAMSTVMRRLDTRAMSVLMD 186
T+N +V AL K+++ VK++ E Y SL + RLD + +
Sbjct: 256 TFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQL--- 312
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
+ +V + D ++ +S +I G CK + + + EM G+ PD
Sbjct: 313 ----KEAVERGF-----IPDAVTYTS-----IIDGLCKLGRVEEGCERFHEMRNRGYEPD 358
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+Y I+ + + K K ++M + G S +T I++ L KA ++ EA +
Sbjct: 359 AVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFL 418
Query: 307 KMKSDDCLTDTSFYSSLI------FILSKAV-------------RFLIYNTMISSACVRS 347
M+ C+ YS+L+ +S AV + YN +I C
Sbjct: 419 AMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAG 478
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK-KRMKDGMLVLNLMREMLSKGIVPQE 406
+ A +K+ + PD T L C + + DG + L M+S+G P
Sbjct: 479 KLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDG---VELFESMVSQGTSPNL 535
Query: 407 STHKMLAEEL 416
++ +L + +
Sbjct: 536 HSYSILMDGI 545
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/304 (20%), Positives = 114/304 (37%), Gaps = 31/304 (10%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
Y A++ L K K + ++ E NG V+ L R L
Sbjct: 183 VYTALISGLAKIGKLDEALVYLNQMVE--NGCARGVEPDVVIHNLVIR-------QLCAS 233
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
++ A F + D + L+ F+ L+ CK +++ A +K+M + P +YT
Sbjct: 234 GNLEDALAYFDELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYT 293
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
++ + + + LKE E+G P +T T ++ L K ++ E + + +M++
Sbjct: 294 SLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNR 353
Query: 312 DCLTDTSFYSSLIFILSKA-------------------VRFLIYNTMISSACVRSEEGNA 352
D Y++LI KA V + YN ++ C A
Sbjct: 354 GYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEA 413
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+EE C T++ + C + + + L R ML +G P ++ ++
Sbjct: 414 YATFLAMEERGCVATVVTYSALMDGFCSEGNVSAA---VELFRRMLDRGCEPNLVSYNII 470
Query: 413 AEEL 416
L
Sbjct: 471 IRGL 474
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 121/307 (39%), Gaps = 57/307 (18%)
Query: 98 LRKRYPSPDKVVEALKCFCFTWAKT------------QTGYMHTPETYNAMVEALGKSKK 145
+R R PD V A F AK Q+G + + TYN +++ L K+ +
Sbjct: 350 MRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGR 409
Query: 146 FGLMWELVKEIDE------------LSNGYVS---LAAMSTVMRRLDTRA-------MSV 183
+ ++E L +G+ S ++A + RR+ R ++
Sbjct: 410 VAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNI 469
Query: 184 LMDTLVKRNSVAHAYKVF---LKFKDCISLSSQIFDVLIHGWCKTRKS-DYAQKAMKEMF 239
++ L + +A AY F L+ + C + + F+ +HG C+ + + + M
Sbjct: 470 IIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYT--FNSFLHGLCQRLDTVGDGVELFESMV 527
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G SP+ SY+ ++ CR EM +G P V+ ++ L A ++
Sbjct: 528 SQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVD 587
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
EAL+V+ +++ D Y SL+ LS+ C R EE L K+
Sbjct: 588 EALEVFRELERRSA-PDAWSYWSLLDALSR--------------CERMEEARLLSFHMKL 632
Query: 360 EEDSCKP 366
+ C P
Sbjct: 633 Q--GCAP 637
>gi|125542844|gb|EAY88983.1| hypothetical protein OsI_10467 [Oryza sativa Indica Group]
Length = 525
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 138/324 (42%), Gaps = 52/324 (16%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-------- 176
G +P + + LG++++F MW+L++ L V+ V+ R+
Sbjct: 99 GVAPSPFALDTALYVLGRARRFAHMWDLLRSSRRLVPDAVTPRTAMVVLGRVAKVCSVRE 158
Query: 177 -------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV 217
+ + + L+ TL + S++ A V+ K ++ Q F++
Sbjct: 159 TVDSFRRLSRMLRGRGDDQEGQLFNALLRTLCQEKSMSDARNVYHALKYEFKVNRQTFNI 218
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
L+ GW + ++ A+ + EM + G PD V+Y I+ +C+ + L EM+EK
Sbjct: 219 LLSGW---KSAEDAEAFVAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMREKD 275
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--FILSKAV--RF 333
P VIT T ++ L Q +A + ++M C D Y++ I F+++K + F
Sbjct: 276 ISPDVITYTSLIGGLGLIGQPDKAKHLLKEMHELGCYPDVPAYNTAIRNFVIAKRLGDAF 335
Query: 334 LIYNTMISSACVRS---------------EEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+ M S + + + G+A +L +++ + C P+ ++ +++C
Sbjct: 336 ALMEEMASKGLMPNATTYNLFFRCYYWAYDIGSAWQLYERMRSEGCFPNTQSCMFIVRLC 395
Query: 379 CHKKRMKDGMLVLNLMREMLSKGI 402
R+ L L +M++ G
Sbjct: 396 HRHGRVAQA---LELWSDMVNNGF 416
>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
Length = 694
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 92/382 (24%), Positives = 170/382 (44%), Gaps = 58/382 (15%)
Query: 108 VVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFG----LMWELVKE-------- 155
V EA+K F + G M TY ++V+ K+ + L+ E+V +
Sbjct: 320 VREAMKLFAQMRVR---GMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVT 376
Query: 156 ----IDEL-SNGYVSLAA-MSTVMRRLDTRAMSVLMDTLV-----KRNSVAHAYKVFLKF 204
+D L G V++A + ++M R +A +L TL+ +NS A + +
Sbjct: 377 YTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNS-ERALDLLNEM 435
Query: 205 KD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263
K+ + L ++ LI G CK +K D A+ + +M G P+ V YT ++ + +
Sbjct: 436 KNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKE 495
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+ L ++ + G +P+V+T ++ L KA IYEA+ ++KM+ + Y++L
Sbjct: 496 SEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTL 555
Query: 324 ------IFILSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSC 364
I LSKAV + +Y ++I + + A L+ K+ E
Sbjct: 556 IDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGL 615
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNA 424
+ D + + C+ M++ VL+ EM+ GI P ++ + L + +K LGN
Sbjct: 616 QLDLYCYTCFISGFCNMNMMQEARGVLS---EMIGTGITPDKTAYNCLIRKYQK--LGNM 670
Query: 425 KE------RIDELLTHATEQRT 440
+E ++ +L+ TE+ T
Sbjct: 671 EEASSLQNEMESVLSSCTEEDT 692
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 132/322 (40%), Gaps = 37/322 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYNA++ KFG + + E+ L M+ V+ +S +D K
Sbjct: 271 TYNALINCF---SKFGWIEKAYSYFGEMKR----LGVMANVV------TLSTFVDAFCKE 317
Query: 192 NSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A K+F + + + ++ + L+ G CK + D A + EM G P+ V+Y
Sbjct: 318 GLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTY 377
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T ++ C+E D L M+ G K + + T ++H K AL + +MK+
Sbjct: 378 TVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKN 437
Query: 311 DDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGN 351
D S Y +LI+ L K + +IY T++ + +E
Sbjct: 438 KGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESE 497
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A+ L KI + +P+ T+ + C + + + + MRE+ G+ P +
Sbjct: 498 AVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMREL---GLDPNVQVYTT 554
Query: 412 LAEELEK-KSLGNAKERIDELL 432
L + K SL A ++E++
Sbjct: 555 LIDGFCKIGSLSKAVHLMNEMV 576
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 19/206 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+++I CK + A+ M G SPD V+Y I+ Y + + +V+ + EM+
Sbjct: 202 FNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMR 261
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ GC V+T +++ K I +A + +MK L +
Sbjct: 262 KSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKR----------------LGVMANVV 305
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+T + + C A+KL ++ P+ T+ + C R+ D +++L+
Sbjct: 306 TLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLD-- 363
Query: 395 REMLSKGIVPQESTHKMLAEELEKKS 420
EM+ +G+VP T+ ++ + L K+
Sbjct: 364 -EMVHQGLVPNVVTYTVMVDGLCKEG 388
>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
Length = 683
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 129/298 (43%), Gaps = 33/298 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G+ + YN ++ AL K K LV+E M + + D + +
Sbjct: 413 GFSMNSQGYNGIIYALCKDGKLDQATRLVQE-------------MKSQGCKPDICTYNTM 459
Query: 185 MDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+ L + + A +F ++ + + ++ LIH + + + EM HG
Sbjct: 460 IYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGC 519
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
D +SY I+ C+E + + L+EM KG KP+ + ++++ L KA ++ +AL+
Sbjct: 520 QLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALE 579
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS 363
+ ++M + D + YNT+I+ C AL L +K+ ++
Sbjct: 580 LSKEMLNQGLTPD----------------IVTYNTLINGLCKVGWTHAALNLLEKLPNEN 623
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
PD T+ + C + + D ++L+ + +S GIVP E T M+ + ++++
Sbjct: 624 VHPDIVTYNILISWHCKVRLLDDAAMLLD---KAISGGIVPNERTWGMMVQNFVRQTV 678
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 125/294 (42%), Gaps = 45/294 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-------DTRAMSVL 184
TY+ ++ L K +FG ++ E++E ++ ST++ D RAM
Sbjct: 350 TYSILMHGLCKLGRFGSAVRMLDEMEE-KGCAPNIVTYSTLLHSFCRNGMWDDARAM--- 405
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
+D ++ + S++SQ ++ +I+ CK K D A + ++EM G
Sbjct: 406 LDQMLAKG---------------FSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCK 450
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD +Y I H C + ++ + + E+G + IT ++HAL + + E L++
Sbjct: 451 PDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRL 510
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
+M C D + YN +I + C ++ L +++
Sbjct: 511 ASEMLLHGCQLDV----------------ISYNGLIKALCKEGNVDRSMALLEEMVTKGI 554
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
KP+ ++ + C +++D L L +EML++G+ P T+ L L K
Sbjct: 555 KPNNFSYNMLINELCKAGKVRD---ALELSKEMLNQGLTPDIVTYNTLINGLCK 605
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 111/272 (40%), Gaps = 20/272 (7%)
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
R+ +V++ TL + + A A ++ + +D + ++ F V C+ ++ A ++
Sbjct: 143 RSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRAGDALALLRG 202
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M +HG PD V Y I + + L EM GC V T ++ L +
Sbjct: 203 MARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGR 262
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA---------------VRFLIYNTMISS 342
+ EA ++ ++M + C+ Y L+ L + V ++ NT+I
Sbjct: 263 VREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVIRG 322
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
+ A +L + + C PD T++ + C R + +L+ M E KG
Sbjct: 323 CLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEE---KGC 379
Query: 403 VPQESTHKMLAEELEKKSL-GNAKERIDELLT 433
P T+ L + + +A+ +D++L
Sbjct: 380 APNIVTYSTLLHSFCRNGMWDDARAMLDQMLA 411
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 112/279 (40%), Gaps = 62/279 (22%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ + +I G K A + + M G PD +Y+ + C+ F L EM
Sbjct: 315 MLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEM 374
Query: 274 QEKGCKPSVITCTIVMH-----------------------------------ALEKAKQI 298
+EKGC P+++T + ++H AL K ++
Sbjct: 375 EEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKL 434
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSK---------AVRFLI----------YNTM 339
+A ++ ++MKS C D Y+++I+ L R LI YNT+
Sbjct: 435 DQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTL 494
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I + L+L ++ C+ D ++ +K C + + M L+ EM++
Sbjct: 495 IHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSM---ALLEEMVT 551
Query: 400 KGIVPQESTHKMLAEELEKK-----SLGNAKERIDELLT 433
KGI P ++ ML EL K +L +KE +++ LT
Sbjct: 552 KGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLT 590
>gi|115442501|ref|NP_001045530.1| Os01g0970900 [Oryza sativa Japonica Group]
gi|15289974|dbj|BAB63669.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
gi|113535061|dbj|BAF07444.1| Os01g0970900 [Oryza sativa Japonica Group]
gi|125573469|gb|EAZ14984.1| hypothetical protein OsJ_04919 [Oryza sativa Japonica Group]
gi|215678751|dbj|BAG95188.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215693250|dbj|BAG88632.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 573
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 115/258 (44%), Gaps = 34/258 (13%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
V+ +LR+ P K + F WA Q GY H +YNAMV LG+ + W+L+
Sbjct: 176 VARVLREVRDHPIKALA-----FFRWAGRQIGYKHGSVSYNAMVRVLGREESMREFWDLI 230
Query: 154 KEIDELSNG-YVSLAAMSTVMRRLDTRAM--------SVLMD-----------TLVKRNS 193
+E+ ++G +V + + R+ R M ++MD L++R +
Sbjct: 231 QEMK--ADGIHVDIDTYVKLSRQFQKRHMLTEAVELYELMMDGPYKPSKQDGPVLIRRIA 288
Query: 194 VAHA------YKVFLKFKDCISLSSQ-IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
+ + Y+V KF+ ++ +FD + + D A + +K M G PD
Sbjct: 289 LGPSPDLELVYRVVRKFEAVWEFKTKDVFDGIHRALTSNGRFDEAAEIVKRMKGEGHQPD 348
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
++Y+ I C+ F + L EM+ +GC P + T T+++ A ++ +AL+ +
Sbjct: 349 NITYSQLIFGLCKANRFDEARKALDEMEAEGCVPDLKTWTMLIQGHCAAGEVEKALQYFT 408
Query: 307 KMKSDDCLTDTSFYSSLI 324
+M + D + ++
Sbjct: 409 EMVEKNLEADAALLDVMV 426
>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g13630-like [Vitis
vinifera]
Length = 829
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 17/207 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++++D K ++ A + + + + IS + F+ LI+G+CK K A K + +
Sbjct: 519 NIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKV 578
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
HG P V+YT + YC E D + L EM+ K KP+ IT T+V+ L K +++E
Sbjct: 579 HGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHE 638
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
++++ + M + D + YNT+I S C + A +L ++
Sbjct: 639 SVQLLKYMYARGLFPDQ----------------ITYNTVIQSFCKAHDLQKAFQLHNQML 682
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDG 387
+ S +P T+ + C +KD
Sbjct: 683 QHSLQPSPVTYNVLINGLCVYGNLKDA 709
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 97/237 (40%), Gaps = 23/237 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ L+ G+CK D A+ M ++G PD SY + C + +M+
Sbjct: 273 FNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDME 332
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF--------- 325
G +P ++T I+ + I A KV ++M + D Y+ LI
Sbjct: 333 NHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIE 392
Query: 326 --------ILSKAVRFLI--YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+LS+ ++ I Y ++SS C A+ L ++E KPD T++ +
Sbjct: 393 ESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLI 452
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST-HKMLAEELEKKSLGNAKERIDEL 431
C + +++ + L EM SK I P +++ EK ++ A+ D +
Sbjct: 453 HGLCKRGAVEEA---IELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSV 506
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 22/217 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +LI G C+ + + K ++M G V+YT + C+ + L EM+
Sbjct: 378 YTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEME 437
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
G KP ++T ++++H L K + EA+++YE+M S ++ S++I L +
Sbjct: 438 VIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAIS 497
Query: 330 --------------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
A ++YN MI G A++ ++I E P T +
Sbjct: 498 EAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLI 557
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C K ++ + + +L+ ++ G+VP T+ L
Sbjct: 558 YGFCKKGKLAEAVKLLDTIK---VHGLVPTSVTYTTL 591
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 123/292 (42%), Gaps = 33/292 (11%)
Query: 159 LSNGYVSLAAMST---VMRRL-------DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDC 207
L+NG+ L +S V++R+ D ++L+ + ++ ++K+ K
Sbjct: 346 LANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQG 405
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ LS + VL+ CK+ + D A + EM G PD ++Y+ I C+ +
Sbjct: 406 LKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAI 465
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+EM K P+ C+ ++ L + I EA ++ + D + Y+ +I
Sbjct: 466 ELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGY 525
Query: 328 SK------AVR-------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
+K AVR + +N++I C + + A+KL I+ P
Sbjct: 526 AKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTS 585
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
T+ + C + M + +++ EM +K I P + T+ ++ + L K+
Sbjct: 586 VTYTTLMNGYCEEGDMHS---MFDMLHEMEAKAIKPTQITYTVVVKGLCKEG 634
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 88/236 (37%), Gaps = 32/236 (13%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
+LI G C+ + A ++E F P VS+ + +C+ M +
Sbjct: 240 ILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKY 299
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-- 334
G P V + I++H L A + EAL+ M++ D Y+ IL+ R L
Sbjct: 300 GLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYN----ILANGFRILGL 355
Query: 335 ---------------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
Y +I C + KL++K+ K T+
Sbjct: 356 ISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTV 415
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
L C R+ + ++ L+ EM G+ P T+ +L L K+ G +E I+
Sbjct: 416 LLSSLCKSGRIDEAVI---LLHEMEVIGLKPDLLTYSVLIHGLCKR--GAVEEAIE 466
>gi|449445824|ref|XP_004140672.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36240-like [Cucumis sativus]
gi|449487417|ref|XP_004157616.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36240-like [Cucumis sativus]
Length = 486
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 131/334 (39%), Gaps = 54/334 (16%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE----LSNGYVSLAAMSTV 172
F WA T + H T+ M L + +F + L++ + S+G S ++
Sbjct: 91 FNWASTIDSFRHDHSTFAWMARTLATTDRFFELTSLLRFLASSPCPCSDGIFSCPQTESI 150
Query: 173 -----------------------MRRL-DTR----AMSVLMDTLVKRNSVAHAYKVFLK- 203
MR+L D R ++L++ VK A + +
Sbjct: 151 FQFSISAYCRARKFDEAVFAFDSMRKLIDGRPSVVVYNILINGFVKSGRFDKALGFYSRM 210
Query: 204 FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263
D + F++LI G+C+ + A + KEM + G SP+ +S+ I+ + RE+ F
Sbjct: 211 LSDRVKPDVYTFNILISGYCRNSQFVQALELFKEMREKGCSPNVISFNTLIKGFFRERKF 270
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT-DTSFYSS 322
EM E GCK S +TC I+M L + +I+EA ++ L D +Y
Sbjct: 271 EDGIALAYEMIELGCKFSSVTCEILMDGLSREGKIFEACEILLDFSRKQVLPKDYDYYG- 329
Query: 323 LIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
++ C + G A+++ ++ + P T + +
Sbjct: 330 ----------------VVEMLCGKGNAGKAMEVVDELWMEGNVPSFITSTTLIDGLRKEG 373
Query: 383 RMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
R+ D M N+ ML G++P T L ++L
Sbjct: 374 RVNDAM---NVTERMLEVGMIPDSVTFNSLLQDL 404
>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
Length = 599
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 139/331 (41%), Gaps = 51/331 (15%)
Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV-SLAAMSTVMRRL----------- 176
+P TYN M++A K +L+K++ E +G+V + +TVM L
Sbjct: 79 SPVTYNVMIDASCKRGMLEEACDLIKKMIE--DGHVPDVVTYNTVMDGLCKSSRVEEALL 136
Query: 177 ------------DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGW 222
+ R+ + ++ L +++ + A +VF ++ KD I S + +LI G
Sbjct: 137 LFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD-IPPDSWSYGILIDGL 195
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
K K + A K + M G +P V+Y I C + K M+ KGC+PS
Sbjct: 196 AKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSR 255
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISS 342
T I++ A K ++ EA ++ ++M D + D + Y+T+IS
Sbjct: 256 FTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDV----------------VTYSTLISG 299
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C + +A L + + + CKP T + C R+K+ VL+ M+S G
Sbjct: 300 LCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLD---AMVSSGQ 356
Query: 403 VPQESTHKMLAEELEKKSLGNAKERIDELLT 433
P T+ L + ER ELL+
Sbjct: 357 SPDVVTYNTL---VHGHCRAGQTERARELLS 384
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/335 (22%), Positives = 146/335 (43%), Gaps = 55/335 (16%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVS--------LAAMSTVMRRLDTRAMSV 183
T+N +++A K K + L+K + + +G+V ++ + ++ R D R
Sbjct: 257 TFNILIDAHCKRGKLDEAFRLLKRMTD--DGHVPDVVTYSTLISGLCSIARVDDARH--- 311
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L++ +VKR ++ +Q + LIHG CK + A++ + M G
Sbjct: 312 LLEDMVKRQCKP-------------TVVTQ--NTLIHGLCKAGRIKEAREVLDAMVSSGQ 356
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
SPD V+Y + +CR + L +M +G P+V+T T ++ L KA ++ EA
Sbjct: 357 SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACG 416
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSAC 344
V+ +MKS C + Y++LI A + ++Y T+ + C
Sbjct: 417 VFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELC 476
Query: 345 VRSEEGNALKLRQKIEEDSCKPDC---ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
AL++ ++ E S + + E + ++ +M+ + L +R+M+ G
Sbjct: 477 KSGRSARALEILREGRE-SLRSEAWGDEVYRFAVDGLLEAGKME---MALGFVRDMVRGG 532
Query: 402 IVPQ-ESTHKMLAEELEKKSLGNAKERIDELLTHA 435
+P E ++A + G A+ ++E++ A
Sbjct: 533 QLPAPERCASLVAGLCKSGQGGEARAVLEEIMDLA 567
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 19/213 (8%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+S S + +LI G K K + A+ +++ G +P V+YT I C F
Sbjct: 6 VSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 65
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+M +GC PS +T +++ A K + EA + +KM D + D
Sbjct: 66 ELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDV---------- 115
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+ YNT++ C S AL L ++E C P+ +H + C + ++
Sbjct: 116 ------VTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQA 169
Query: 388 MLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
V + EM +K I P ++ +L + L K
Sbjct: 170 CQVFH---EMEAKDIPPDSWSYGILIDGLAKAG 199
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 19/183 (10%)
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M + SPD SY I+ + +++ G PS + T ++H L A
Sbjct: 1 MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
+A +++ M C + YN MI ++C R A L +
Sbjct: 61 FDDARELFADMNRRGCPPSP----------------VTYNVMIDASCKRGMLEEACDLIK 104
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
K+ ED PD T+ + C R+++ +L+ N EM G P +H + L
Sbjct: 105 KMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFN---EMERLGCTPNRRSHNTIILGLC 161
Query: 418 KKS 420
++S
Sbjct: 162 QQS 164
>gi|147793827|emb|CAN62355.1| hypothetical protein VITISV_022418 [Vitis vinifera]
Length = 546
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 115/285 (40%), Gaps = 41/285 (14%)
Query: 117 FTWAK---TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LSN 161
F WA ++GY +N +++ LG+ ++F M +L E+ + L N
Sbjct: 139 FNWASRCGXESGYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLXNERTFGVLLN 198
Query: 162 GYVSL----AAMSTVMRR------LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211
Y + A+ +R LD A L+ +L + V A +F K+
Sbjct: 199 RYAAAHKTEEAVKIFYKRKGLGFELDLIAFQTLLMSLCRYKHVEMAEFLFHSKKNEFPPD 258
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
+ +V+++GWC A++ ++ PD +Y FI + +
Sbjct: 259 IKSMNVILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQ 318
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
M EKGC P V C ++ AL K+I EAL+V +M DC D + Y+SLI L K
Sbjct: 319 AMWEKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQ 378
Query: 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
RF +L +E+ C P+ T+ LK
Sbjct: 379 RF----------------EKVYELLDDMEQKGCLPNARTYGYLLK 407
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 72/338 (21%), Positives = 143/338 (42%), Gaps = 55/338 (16%)
Query: 97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWEL---- 152
+L RY + K EA+K F + + G+ + ++ +L + K + L
Sbjct: 195 VLLNRYAAAHKTEEAVKIF---YKRKGLGFELDLIAFQTLLMSLCRYKHVEMAEFLFHSK 251
Query: 153 -------VKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVA 195
+K ++ + NG+ L ++ R + D + +++L K ++
Sbjct: 252 KNEFPPDIKSMNVILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLS 311
Query: 196 HAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A K+F K C + I + +I C ++ A + ++EM + PD +Y
Sbjct: 312 TAVKLFQAMWEKGC-NPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSL 370
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I+H C+ + F KV L +M++KGC P+ T ++ + +K +++ L E+M+ + C
Sbjct: 371 IKHLCKIQRFEKVYELLDDMEQKGCLPNARTYGYLLKSTKKPEEVPGIL---ERMERNGC 427
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE---DSCKPDCET 370
++ Y+ ++ + + G LKLR ++E + PD T
Sbjct: 428 RMNSDCYNLILKLY-------------------MDWGYELKLRSTLDEMERNGMGPDQRT 468
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+ + K RM D L+ ++M G+VP+ T
Sbjct: 469 YTIMIHGLYDKGRMDD---ALSYFKQMTLMGMVPEPRT 503
>gi|357515141|ref|XP_003627859.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355521881|gb|AET02335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 731
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/375 (23%), Positives = 153/375 (40%), Gaps = 63/375 (16%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV--SLAAMSTVMR 174
F WA++ Y H+ + +M+ L K + F ++ +D+++ + S + +++++R
Sbjct: 65 FKWAQSIPHYTHSLHSSWSMIHMLTKHRHFKTAQQV---LDKMAQREILSSPSVLTSLVR 121
Query: 175 -----RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF--DVLIHGWCKTRK 227
+++ +S ++ K A +VF + C +L + VL++ K
Sbjct: 122 IHDDPEVNSHVLSWIVIHYAKSKMTHDAVQVFEQMSLC-NLKPHLHACTVLMNSLLKDGI 180
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
+ K K M Q G P+ Y C I + +D + ++ L EM+ KG P + T
Sbjct: 181 TSMVWKVYKRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFILNEMEVKGVVPDIFTYNT 240
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRF-------- 333
++ K YEAL V +KM+ + D Y+SLI+ K A+R
Sbjct: 241 LIALYCKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAMRMFGEIKDAI 300
Query: 334 ---LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
+ Y T+I C +E AL+LR+ + P T+ L+ C R++D +
Sbjct: 301 PNHVTYTTLIDGYCKANEFEEALRLREMMVAKGLYPGVVTYNSILRKLCSDGRIRDANKL 360
Query: 391 LNLMRE--------------------------------MLSKGIVPQESTHKMLAEELEK 418
L+ M E ML G+ P T+K L K
Sbjct: 361 LHEMSERKVQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFCK 420
Query: 419 KS-LGNAKERIDELL 432
S L +AKE + +L
Sbjct: 421 TSELESAKELLFGML 435
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 98/230 (42%), Gaps = 22/230 (9%)
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
++ I+L ++ LI+G+CK K A + E+ P+ V+YT I+ YC+ +F
Sbjct: 263 REGINLDIVSYNSLIYGFCKEGKMREAMRMFGEI--KDAIPNHVTYTTLIDGYCKANEFE 320
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ + M KG P V+T ++ L +I +A K+ +M D+
Sbjct: 321 EALRLREMMVAKGLYPGVVTYNSILRKLCSDGRIRDANKLLHEMSERKVQADS------- 373
Query: 325 FILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
+ NT+I++ C + +ALK + K+ E P+ T+ + C +
Sbjct: 374 ---------VTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFCKTSEL 424
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI-DELLT 433
+ L+ ML G P T+ + + KK +A + DE L+
Sbjct: 425 ESAK---ELLFGMLDAGFSPNYRTYSWIVDSYCKKDNTDAVLALPDEFLS 471
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 25/218 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL----DTRAMSVLMDT 187
TY +++ K+ +F L +E+ Y + ++++R+L R + L+
Sbjct: 305 TYTTLIDGYCKANEFEEALRL-REMMVAKGLYPGVVTYNSILRKLCSDGRIRDANKLLHE 363
Query: 188 LVKR---------NSVAHAY------KVFLKFKD-----CISLSSQIFDVLIHGWCKTRK 227
+ +R N++ +AY LKFK ++ +S + LIHG+CKT +
Sbjct: 364 MSERKVQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFCKTSE 423
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
+ A++ + M GFSP+ +Y+ ++ YC++ + V E KG ++
Sbjct: 424 LESAKELLFGMLDAGFSPNYRTYSWIVDSYCKKDNTDAVLALPDEFLSKGFCLNISLYRA 483
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
++ L K ++I A K+ M+ D+ Y+SL F
Sbjct: 484 LIRRLCKIERIECAEKLLYHMEGKGISGDSVIYTSLAF 521
>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 834
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 94/363 (25%), Positives = 151/363 (41%), Gaps = 52/363 (14%)
Query: 96 EILRKRYPSPDKVVEALKCFCFTWAK-TQTGYMHTPETYNAMVEALGKSKKFGLM---WE 151
IL K KV EA C W K G + +YN ++ LG KK G M +
Sbjct: 433 NILLKWLGELGKVNEA----CNLWEKMVSKGITPSLVSYNNLI--LGHCKK-GCMDKAYS 485
Query: 152 LVKEIDELSNGYVSLAAMSTVMRRLDTRAMS--VLMDTLVKRNSVAHAYKVFLKFKDC-I 208
++K I E R L A++ +L+D K+ A+ VF + I
Sbjct: 486 MLKSILE---------------RGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANI 530
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
+ + F+ +I+G KT + Q + + GF ++Y I+ + +E
Sbjct: 531 APTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALL 590
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS 328
+EM E G P VIT T ++ L K+ +I AL+++ MK D YS+LI
Sbjct: 591 AYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFC 650
Query: 329 K------AVRF-------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
K A +F ++YN+MIS + AL L Q++ ++ D +
Sbjct: 651 KMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQ 710
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERI 428
+ + + ++ L L+L EMLSK IVP + +L L L NA + +
Sbjct: 711 VYTSIIGGLLKEGKLS---LALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKIL 767
Query: 429 DEL 431
E+
Sbjct: 768 KEM 770
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 126/306 (41%), Gaps = 36/306 (11%)
Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL 188
T T+N ++ LGK+ + V E + N ++ +ST + + ++D
Sbjct: 533 TDHTFNTVINGLGKTGR-------VSETQDKLNNFIKQGFVSTSI------TYNSIIDGF 579
Query: 189 VKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
K +V A + + + IS + LI G CK+ K A + +M G D
Sbjct: 580 FKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDV 639
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
V+Y+ I+ +C+ D E+ + G P+ + ++ + AL ++++
Sbjct: 640 VAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQE 699
Query: 308 MKSDDCLTDTSFYSSLIF-----------------ILSKAV--RFLIYNTMISSACVRSE 348
M + D Y+S+I +LSK + ++Y +I+ +
Sbjct: 700 MIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQ 759
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
NA K+ ++++ ++ P + + + +++ L EML KG+VP ++T
Sbjct: 760 LENASKILKEMDGNNITPSVLVYNILIAGNFREGNLQEA---FRLHDEMLDKGLVPDDTT 816
Query: 409 HKMLAE 414
+ +L
Sbjct: 817 YDILVN 822
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 106/262 (40%), Gaps = 31/262 (11%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLK------FKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
M+ L+ +V+RN V A +++ + + DC +L V++ K K + +K
Sbjct: 188 MNNLLTAMVRRNMVCDARQLYDEMVERGIYGDCYTLH-----VVMRACMKEGKFEEVEKF 242
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
KE G D +Y+ ++ CR D LKEM+E G PS T T V+ A K
Sbjct: 243 FKEAKGRGLEVDAAAYSILVQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACVK 302
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
EAL++ ++M S + + ++ +++ CV + AL+
Sbjct: 303 QGNFVEALRLKDEMVS----------------VGLPMNVIVTRSLMKGYCVLGDVNLALQ 346
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
L ++ E PD + + C M+ + M+ M GI P L E
Sbjct: 347 LFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLM---GIQPNVFIVNSLLE 403
Query: 415 EL-EKKSLGNAKERIDELLTHA 435
E+ L +A DE + H
Sbjct: 404 GFHEQNLLEHAYGLFDEAVEHG 425
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 100/238 (42%), Gaps = 22/238 (9%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L++ ++N + HAY +F + + + +++L+ + K + A ++M G
Sbjct: 401 LLEGFHEQNLLEHAYGLFDEAVEHGITNVVTYNILLKWLGELGKVNEACNLWEKMVSKGI 460
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+P VSY I +C++ K LK + E+G KP+ +T T+++ K A
Sbjct: 461 TPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFV 520
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSAC 344
V+E+M + + ++++I L K R + YN++I
Sbjct: 521 VFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFF 580
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
+AL +++ E PD T+ + C ++ L L + +M KG+
Sbjct: 581 KEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIG---LALEMHSDMKYKGM 635
>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
virgata]
Length = 418
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 117/271 (43%), Gaps = 31/271 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L AM + D SVL++ L K + +
Sbjct: 164 KWGLRPSVV-SFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKM 222
Query: 195 AHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A +F + D + + F LI G CK R+ D A + K+M SPD ++Y
Sbjct: 223 DDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTL 282
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I C++ D ++ + EM KG KP IT T ++ K + A + ++M ++
Sbjct: 283 IYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENI 342
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
D Y++LI L + R+L +A K+ +++ KPD T+
Sbjct: 343 RLDDVAYTALISGLCQEGRYL----------------DAEKVLREMLSVGLKPDTGTYTM 386
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ C K + G L++EM G VP
Sbjct: 387 IINEFCKKGDVWTGS---KLLKEMQRDGHVP 414
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 105/261 (40%), Gaps = 51/261 (19%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
S F++L+H +CK AQ + + G P VS+ + Y R D +
Sbjct: 135 SLYFFNILMHRFCKEGDIRVAQLVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLK 194
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF----- 325
M G +P V T +++++ L K ++ +A ++++M + + +++LI
Sbjct: 195 SAMHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKN 254
Query: 326 ------------ILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+LS+++ + YNT+I C + + A L ++ KPD T+
Sbjct: 255 RRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITY 314
Query: 372 ARSLKMCC----------HKKRMKDGMLVLN----------------------LMREMLS 399
+ CC H+KRM + L+ ++REMLS
Sbjct: 315 TTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLS 374
Query: 400 KGIVPQESTHKMLAEELEKKS 420
G+ P T+ M+ E KK
Sbjct: 375 VGLKPDTGTYTMIINEFCKKG 395
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 14/154 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K +L+ E MS + D + L+D K
Sbjct: 278 TYNTLIYGLCKKGDLKQAHDLIDE-------------MSMKGLKPDKITYTTLIDGCCKE 324
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A++ + ++ I L + LI G C+ + A+K ++EM G PD +Y
Sbjct: 325 GDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTY 384
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
T I +C++ D LKEMQ G PSV++
Sbjct: 385 TMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVS 418
>gi|125529279|gb|EAY77393.1| hypothetical protein OsI_05381 [Oryza sativa Indica Group]
Length = 573
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 115/258 (44%), Gaps = 34/258 (13%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
V+ +LR+ P K + F WA Q GY H +YNAMV LG+ + W+L+
Sbjct: 176 VARVLREVRDHPIKALA-----FFRWAGRQIGYKHGSVSYNAMVRVLGREESMREFWDLI 230
Query: 154 KEIDELSNG-YVSLAAMSTVMRRLDTRAM--------SVLMD-----------TLVKRNS 193
+E+ ++G +V + + R+ R M ++MD L++R +
Sbjct: 231 QEMK--ADGIHVDIDTYVKLSRQFQKRHMLTEAVELYELMMDGPYKPSKQDGPVLIRRIA 288
Query: 194 VAHA------YKVFLKFKDCISLSSQ-IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
+ + Y+V KF+ ++ +FD + + D A + +K M G PD
Sbjct: 289 LGPSPDLELVYRVVRKFEAVWEFKTKDVFDGIHRALTSNGRFDEAAEIVKRMKGEGHQPD 348
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
++Y+ I C+ F + L EM+ +GC P + T T+++ A ++ +AL+ +
Sbjct: 349 NITYSQLIFGLCKANRFDEARKALDEMEAEGCVPDLKTWTMLIQGHCAAGEVEKALQYFT 408
Query: 307 KMKSDDCLTDTSFYSSLI 324
+M + D + ++
Sbjct: 409 EMVEKNLEADAALLDVMV 426
>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 418
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 126/310 (40%), Gaps = 36/310 (11%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W +E L GY + ++LM K
Sbjct: 102 DTCRKVIEHLMKLKYFKLVWGFYEE--SLECGYPA-----------SLYFFNILMHNFCK 148
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A VF K + S F+ L++G+ K D + M G PD +
Sbjct: 149 GGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYT 208
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+ I C+E + EM + G P+ +T T ++ K ++ A+++Y +M
Sbjct: 209 YSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQML 268
Query: 310 SDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEG 350
S L D Y++LI+ L K + Y T+I C +
Sbjct: 269 SQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLE 328
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A + R+++ +++ + D + + C + R D ++REMLS G+ P+ T+
Sbjct: 329 TAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAE---KMLREMLSVGLKPEIGTYT 385
Query: 411 MLAEELEKKS 420
M+ E KK
Sbjct: 386 MIINEFCKKG 395
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 86/388 (22%), Positives = 152/388 (39%), Gaps = 60/388 (15%)
Query: 51 TQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVE 110
TQ D + +++ES L + I + L+++H+ R + + KV+E
Sbjct: 61 TQRSDIYVFSGLITAYLESGFLRDA--IECYRLTKEHK---------FRVPFDTCRKVIE 109
Query: 111 ---ALKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM---------WEL-- 152
LK F W + GY + +N ++ K + L W L
Sbjct: 110 HLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRP 169
Query: 153 -VKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVF 201
V + L NGY+ + + R + D SVL++ L K + + A +F
Sbjct: 170 SVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALF 229
Query: 202 LKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
+ D + + + F LI G CK + D A + ++M PD ++Y I C++
Sbjct: 230 DEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKK 289
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
D ++ + EM KG KP IT T ++ K + A + ++M ++ D Y
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
++L IS C +A K+ +++ KP+ T+ + C
Sbjct: 350 TAL----------------ISXLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQEST 408
K + G L++EM G +P T
Sbjct: 394 KGDVWTGS---KLLKEMQRDGYLPNVVT 418
>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
Length = 722
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 127/302 (42%), Gaps = 38/302 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L L VK+ D+L + M TV+ + ++ L++
Sbjct: 310 TYNPLITGL-------LAKGFVKKADDLQLEMENEGIMPTVV------TYNAMIHGLLQS 356
Query: 192 NSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
V A F++ + + L + ++ L++G+CK A ++ G +P ++
Sbjct: 357 GQVEAAQVKFVEMR-AMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLT 415
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y I+ YCR D + +EM E+GC P V T TI+M A + A + +++M
Sbjct: 416 YNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEML 475
Query: 310 SDDCLTDTSFYSSLI------FILSKAVRF-------------LIYNTMISSACVRSEEG 350
S D Y++ I ++KA R + YN +I C
Sbjct: 476 SKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLN 535
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
+A L+ K+ + +PDC T+ + C + +++ ++M+S G+ P T+
Sbjct: 536 DAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREAR---KFFKDMISDGLAPSAVTYT 592
Query: 411 ML 412
+
Sbjct: 593 VF 594
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 102/239 (42%), Gaps = 20/239 (8%)
Query: 192 NSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
++A A+++ + + IS + +++LI G CKT + A+ +M +G PD ++Y
Sbjct: 497 GAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITY 556
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
TC I +C R+ K+M G PS +T T+ +HA + +Y A + KM
Sbjct: 557 TCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLE 616
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ + + YN +I + C A + ++ E P+ T
Sbjct: 617 EGVEPNE----------------ITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYT 660
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
+ + C + +D M EM GI P THK L + ++ + +A E ++
Sbjct: 661 YTLLIDGNCKEGNWEDAM---RFYFEMHQNGIHPDYLTHKALFKGFDEGHMNHAIEYLE 716
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 111/282 (39%), Gaps = 30/282 (10%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
Q G + TYN ++++ K + + L+KE++ +G + + +
Sbjct: 230 QLGIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLP-----------NDVTHN 278
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
V++ L ++ + A ++ + SS ++ LI G A EM G
Sbjct: 279 VVITGLARKGDLEEAAEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEG 338
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
P V+Y I + EM+ G +P VIT +++ KA + EAL
Sbjct: 339 IMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEAL 398
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362
++ ++ ++ L A L YN +I C + A +L++++ E
Sbjct: 399 LLFGDLR----------HAGL------APTVLTYNILIDGYCRLGDLEEARRLKEEMVEQ 442
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
C PD T+ +K + + + EMLSKG+ P
Sbjct: 443 GCLPDVCTYTILMKGSHNACSLA---MAREFFDEMLSKGLQP 481
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 25/199 (12%)
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK--GCKPSVITCTIVMHALEK 294
EM Q G P V+Y ++ + +E KV LKEM+ + GC P+ +T +V+ L +
Sbjct: 227 EMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLAR 286
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV------------------RFLIY 336
+ EA ++ E M+ + ++ + +L+K + Y
Sbjct: 287 KGDLEEAAEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTY 346
Query: 337 NTMISSACVRSEEGNALKLR-QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
N MI ++S + A +++ ++ +PD T+ L C +K+ +L+ +R
Sbjct: 347 NAMI-HGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLR 405
Query: 396 EMLSKGIVPQESTHKMLAE 414
G+ P T+ +L +
Sbjct: 406 H---AGLAPTVLTYNILID 421
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/379 (22%), Positives = 153/379 (40%), Gaps = 56/379 (14%)
Query: 112 LKCFCF---------TWAKT-QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI----- 156
+ CFC AK + G T T+ ++ L K+ +F EL ++
Sbjct: 133 INCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGC 192
Query: 157 -------DELSNGYVSL---AAMSTVMRRL-------DTRAMSVLMDTLVKRNSVAHAYK 199
+ NG + AA + +++++ D S L+D+L K V A
Sbjct: 193 QPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALD 252
Query: 200 VFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258
+F K IS + + LI G C + A + EM PD V+++ I+ +C
Sbjct: 253 IFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFC 312
Query: 259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318
+E + + LK M E G +P+VIT +MH ++ EA K+++ M + C D
Sbjct: 313 KEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVF 372
Query: 319 FYSSLI--FILSKAV-----------------RFLIYNTMISSACVRSEEGNALKLRQKI 359
YS LI + + K + + Y T+I + C + A +L + +
Sbjct: 373 SYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDM 432
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
+ PD T++ L+ C + + L R M + P + +L + + K
Sbjct: 433 HTNGYLPDLCTYSVLLEGFCKQGYLGKA---FRLFRAMQGTYLKPNLVMYTILIDSMCKS 489
Query: 420 -SLGNAKERIDELLTHATE 437
+L +A++ EL H +
Sbjct: 490 GNLNHARKLFSELFVHGLQ 508
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 19/194 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LIH +C+ K A++ K+M +G+ PD +Y+ +E +C++ K + MQ
Sbjct: 409 YTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQ 468
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
KP+++ TI++ ++ K+ + A K++ ++ F+
Sbjct: 469 GTYLKPNLVMYTILIDSMCKSGNLNHARKLFSEL----------------FVHGLQPDVQ 512
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
IY T+I+ C AL+ +K+EED C P+ ++ ++ KD + L+
Sbjct: 513 IYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQH---KDESRAVQLI 569
Query: 395 REMLSKGIVPQEST 408
EM KG V E T
Sbjct: 570 GEMRDKGFVADEGT 583
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 16/191 (8%)
Query: 129 TPET--YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP T Y ++ A + K EL K++ +NGY+ D SVL++
Sbjct: 403 TPNTVSYTTLIHAFCQLGKLREARELFKDMH--TNGYLP-----------DLCTYSVLLE 449
Query: 187 TLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
K+ + A+++F + + + ++ +LI CK+ ++A+K E+F HG P
Sbjct: 450 GFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQP 509
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D YT I C+E + ++M+E GC P+ + +++ + K A+++
Sbjct: 510 DVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLI 569
Query: 306 EKMKSDDCLTD 316
+M+ + D
Sbjct: 570 GEMRDKGFVAD 580
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 102/247 (41%), Gaps = 23/247 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++LI+ +C + D + ++ + G P +++T I C+ +F + +M
Sbjct: 129 LNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMV 188
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
+GC+P V T T +++ L K + A + +KM C D YS+LI
Sbjct: 189 ARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVN 248
Query: 325 -------FILSKAVRFLI--YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++ +K + + Y ++I C S A + ++ + PD T + +
Sbjct: 249 EALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLI 308
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE-KKSLGNAKERIDELLTH 434
+ C + + + VL M EM G+ P T+ L + + A++ D ++T
Sbjct: 309 DIFCKEGNVLEAQGVLKTMTEM---GVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITR 365
Query: 435 ATEQRTF 441
+ F
Sbjct: 366 GCKPDVF 372
>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 817
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 129/284 (45%), Gaps = 33/284 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T+N+++ L K +K L+KE++ NG++ D S+L D L++
Sbjct: 283 TFNSLLSGLCKMRKMKEARSLLKEME--VNGFMP-----------DGYTYSILFDGLLRC 329
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A +++ + + I +++ +L++G CK K + A++ +K+ ++G D V Y
Sbjct: 330 DDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIY 389
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
F+ YCR D K T++ M+ G +P+ IT ++ K++ +A + +KM
Sbjct: 390 NTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAE 449
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
Y++LI K F ++ +++EE KP+ +
Sbjct: 450 KGVTPSVETYNTLIDGYGKLCTF----------------DRCFQILEQMEEIGVKPNVVS 493
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ + C ++ + +VL R+M+ +G++P + ML +
Sbjct: 494 YGSLINCLCKDGKILEAEIVL---RDMICRGVLPNAQVYNMLID 534
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 133/320 (41%), Gaps = 43/320 (13%)
Query: 119 WAK--TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
W K + G + ETYN +++ GK F ++++++++E+ +
Sbjct: 443 WVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIG-------------VKP 489
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL--SSQIFDVLIHGWCKTRKSDYAQKA 234
+ + L++ L K + A ++ L+ C + ++Q++++LI G C K A +
Sbjct: 490 NVVSYGSLINCLCKDGKILEA-EIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRF 548
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
EM + SP V+Y I+ C++ + + L ++ G P VIT ++
Sbjct: 549 FDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYAN 608
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-AVRF-----------------LIY 336
A + + L +YE MK+ Y LI SK + ++Y
Sbjct: 609 AGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGIELVEKLYNEMLQMNLLPDRVVY 668
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML--VLNLM 394
N MI A L Q + + PD T+ SL + ++G L + +L+
Sbjct: 669 NAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTY-NSLIL----GHFREGKLSNIKDLV 723
Query: 395 REMLSKGIVPQESTHKMLAE 414
M +K + P+ T+ +L +
Sbjct: 724 NNMKAKELAPKADTYDILVK 743
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 123/295 (41%), Gaps = 58/295 (19%)
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRK-------SDYA 231
A S+ ++ +++ + +F F C I L + D+L+ CK++ ++
Sbjct: 73 AYSLAKSLILTKSTFSSPSDLFSCFSACSIPLRITLSDMLLSVCCKSKMLREAVELYEFM 132
Query: 232 QKAMK----------------------------EMFQHGFSPDGVSYTCFIEHYCREKDF 263
++ K E+ GF D Y I+ + ++
Sbjct: 133 RRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNL 192
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+ L M+++G +P+V +++ L + K+I +A K++++M + + S+
Sbjct: 193 KMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEM------CNINLVGSI 246
Query: 324 IFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+ YNT+I C E A K+R++++E S P+ T L C ++
Sbjct: 247 V----------TYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRK 296
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQ 438
MK+ +L++EM G +P T+ +L + L + GN EL ATE+
Sbjct: 297 MKEAR---SLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAM---ELYEQATEK 345
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 87/198 (43%), Gaps = 21/198 (10%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I++VLI G C+ ++ A+K EM V+Y I+ YC+ + + M
Sbjct: 213 IYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERM 272
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+EK P++IT ++ L K +++ EA + ++M+ + + D YS L
Sbjct: 273 KEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILF--------- 323
Query: 334 LIYNTMISSACVRSEEGN-ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
+R ++GN A++L ++ E + + T + L C + +++ +L
Sbjct: 324 --------DGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEIL- 374
Query: 393 LMREMLSKGIVPQESTHK 410
++ G+V E +
Sbjct: 375 --KKFTENGLVADEVIYN 390
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 82/220 (37%), Gaps = 22/220 (10%)
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
I K + + + M + G P+ Y I CREK R + EM
Sbjct: 183 IQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINL 242
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNT 338
S++T ++ K ++ A K+ E+MK S A + +N+
Sbjct: 243 VGSIVTYNTLIDGYCKVGELDAAFKMRERMKEK----------------SVAPNIITFNS 286
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
++S C + A L +++E + PD T++ R DG + L +
Sbjct: 287 LLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLL---RCDDGNGAMELYEQAT 343
Query: 399 SKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQ 438
KGI T +L L K+ E+ +E+L TE
Sbjct: 344 EKGIRINNYTGSILLNGLCKQG---KVEKAEEILKKFTEN 380
>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 841
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 33/240 (13%)
Query: 192 NSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMKEMFQ 240
N++ + + K KD I L +++ F +L+ G+CK A+ + M +
Sbjct: 372 NALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMK 431
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
PD V+Y+ ++ YC + K + M +G +V + I+++ K K + E
Sbjct: 432 QSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDE 491
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMIS 341
A+K++++M D YSSLI L K+ R + YN+++
Sbjct: 492 AMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILD 551
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
+ C + A+ L K++ +PD T+ +K C +++D V ++L KG
Sbjct: 552 ALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVF---EDLLVKG 608
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 109/233 (46%), Gaps = 30/233 (12%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK------FKDCISLSSQIFDVLIHGWCKTRKSDY 230
+ ++ +++++ K V A K+F + F D I+ SS LI G CK+ + Y
Sbjct: 472 NVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSS-----LIDGLCKSGRISY 526
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A + + EM G PD ++Y ++ C++ K L +++ +G +P + T TI++
Sbjct: 527 ALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVK 586
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEG 350
L ++ ++ +A KV+E + + + Y MI C +
Sbjct: 587 GLCQSGKLEDARKVFEDL----------------LVKGYNLDVYAYTVMIQGFCDKGLFD 630
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
AL L K+EE+ C PD +T+ + + +K D + L+REM+ +G++
Sbjct: 631 EALALLSKMEENGCIPDAKTY-EIIILSLFEKDEND--MAEKLLREMIMRGLL 680
>gi|115489794|ref|NP_001067384.1| Os12g0638900 [Oryza sativa Japonica Group]
gi|77556813|gb|ABA99609.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113649891|dbj|BAF30403.1| Os12g0638900 [Oryza sativa Japonica Group]
gi|125580213|gb|EAZ21359.1| hypothetical protein OsJ_37016 [Oryza sativa Japonica Group]
Length = 859
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 131/323 (40%), Gaps = 51/323 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELS--------NGYVSLAA 168
F W K Q G+ H +Y M+ LG++++FG M +L+ E++ + N +
Sbjct: 353 FQWLKRQPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYG 412
Query: 169 MSTVMRRL--------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
+ +R D L+D K + A ++ + ++ + LS
Sbjct: 413 RANYLREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQE-VGLSPDT 471
Query: 215 F--DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
F +++ K A K EM ++G +P+ V+Y I + +++ V K+
Sbjct: 472 FTYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKD 531
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
MQ G +P IT +IVM L + EA V+ +M+ D D Y L+ + KA
Sbjct: 532 MQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMR-HDWAPDEPVYGLLVDLWGKA-- 588
Query: 333 FLIYNTMISSACVRSEEGN---ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
GN AL + +D +P+ T L R +D
Sbjct: 589 -----------------GNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYS 631
Query: 390 VLNLMREMLSKGIVPQESTHKML 412
VL + ML++G+VP T+ +L
Sbjct: 632 VL---QNMLAQGLVPSLQTYTLL 651
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 22/196 (11%)
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
Q GF DG SYT I + + F + L EM CKP+V+T ++HA +A +
Sbjct: 359 QPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLR 418
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMI 340
EA+KV+E+M+ D Y +LI I +K Y+ M+
Sbjct: 419 EAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLSPDTFTYSAMV 478
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+ A KL ++ E+ C P+ T+ + + + ++ V+ L ++M
Sbjct: 479 NCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYEN---VVKLYKDMQVA 535
Query: 401 GIVPQESTHKMLAEEL 416
G P + T+ ++ E L
Sbjct: 536 GFRPDKITYSIVMEVL 551
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 70/180 (38%), Gaps = 22/180 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELS--------NGYVSLAA--------------M 169
TY+AMV LGK ++L E+ E N ++L A M
Sbjct: 473 TYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDM 532
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSD 229
R D S++M+ L + A VF++ + + ++ +L+ W K D
Sbjct: 533 QVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRHDWAPDEPVYGLLVDLWGKAGNVD 592
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
A M Q G P+ + + + + F+ L+ M +G PS+ T T+++
Sbjct: 593 KALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLL 652
>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 146/323 (45%), Gaps = 39/323 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLV-- 189
+N ++ +L K K + + L K++D LSN R + +++L++ L
Sbjct: 71 VFNKLLGSLVKKKHYSTVISLCKQMD-LSN------------IRPNVYTLTILINCLCHS 117
Query: 190 KRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
R+ V A+ K FK + + F L++G C K A K E+ + GF+P +
Sbjct: 118 NRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLI 177
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+YT I+ C+ LK+M+EKGCKP V+ V+ +L K ++ EA+ + +M
Sbjct: 178 TYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEM 237
Query: 309 KSDDCLTDTSFYSSLIFI------LSKAV--------RFLIYNTMISSACVRS--EEGNA 352
+ YSS++ L++A R ++ NT+ + V +EG
Sbjct: 238 VDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMI 297
Query: 353 LKLRQKIE---EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
L+ R+ E E+ +PD T++ + C + +M + + ++ M+ KG P +
Sbjct: 298 LEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDI---MVGKGFAPSVRVY 354
Query: 410 KMLAE-ELEKKSLGNAKERIDEL 431
+L + + L AK + E+
Sbjct: 355 NILINGHCKSRRLNEAKTLLSEM 377
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 112/258 (43%), Gaps = 23/258 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D S LMD ++ + A K+F + + S +++++LI+G CK+R+ + A+ +
Sbjct: 315 DAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLL 374
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM+ +PD V+Y+ ++ +C+ + KEM G P IT +I++ L K
Sbjct: 375 SEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKH 434
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------------FILSKAVRFLIY 336
+ EA ++ + M+ Y+ LI F+ + Y
Sbjct: 435 GHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTY 494
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
MIS A ++ +K+ + C P+ T+ +++ R D + L+ E
Sbjct: 495 TVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQ---GFLRNGDPSNAVRLIEE 551
Query: 397 MLSKGIVPQESTHKMLAE 414
M+ +G ST +ML +
Sbjct: 552 MVGRGFSADSSTFQMLLD 569
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/363 (21%), Positives = 150/363 (41%), Gaps = 50/363 (13%)
Query: 104 SPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGY 163
S K+++A+K F + G+ + TY +++ L K +L+K+++E
Sbjct: 153 SKAKIIDAVKLF---DEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEE-KGCK 208
Query: 164 VSLAAMSTVMRRL--DTRA------MSVLMD-----TLVKRNSVAHAYKVFLKFKDCISL 210
+ A +TV+ L D RA S ++D +V +S+ H + + + SL
Sbjct: 209 PDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSL 268
Query: 211 SSQI-----------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR 259
Q+ F +L+ G CK A++ + M ++G PD +Y+ ++ YC
Sbjct: 269 FKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCL 328
Query: 260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF 319
+ + M KG PSV I+++ K++++ EA + +M D DT
Sbjct: 329 QSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVT 388
Query: 320 YSSLIFILSKAVR-------------------FLIYNTMISSACVRSEEGNALKLRQKIE 360
YS+L+ +A R + Y+ ++ C A +L + ++
Sbjct: 389 YSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQ 448
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
E +P + ++ C+ +++ L + KGI P T+ ++ L K+
Sbjct: 449 ESKIEPHICIYNILIQGMCNFGKLEAAR---ELFSNLFVKGIQPSVVTYTVMISGLLKEG 505
Query: 421 LGN 423
L N
Sbjct: 506 LSN 508
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 24/186 (12%)
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL--EKAKQIYEAL 302
P V + + ++K + V K+M +P+V T TI+++ L ++ A
Sbjct: 67 PPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAF 126
Query: 303 KVYEKM-KSDDCLTDTSFYSSLIFILSK------------------AVRFLIYNTMISSA 343
KM K T +F + L + SK A + Y T+I
Sbjct: 127 SALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGL 186
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C NAL+L +K+EE CKPD + + C +R + M + EM+ +GI
Sbjct: 187 CKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFS---EMVDQGIP 243
Query: 404 PQESTH 409
P T+
Sbjct: 244 PNVVTY 249
>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 22/231 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F +L+ CK A+ + M + G PD V+Y+ ++ YC + K + M
Sbjct: 272 FSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMS 331
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
G P + I+++ L K K + EAL ++++M DT Y+SLI L K R
Sbjct: 332 RLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRIS 391
Query: 333 -----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
L YN++I C A+ L +KI++ +P T+ +
Sbjct: 392 YAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILI 451
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
C R+K+ ++ +++L KG T+ ++ L K+ L N E
Sbjct: 452 DGLCKGGRLKNAQ---DVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAE 499
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 14/178 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN++++ L K + W+LV DE+ N + D + L+D L K
Sbjct: 376 TYNSLIDGLCKLGRISYAWQLV---DEMHNNGIPA----------DILTYNSLIDVLCKN 422
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ + A + K KD I S +++LI G CK + AQ +++ G+S + +Y
Sbjct: 423 HHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTY 482
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
I C+E F + + L +M+ G P +T ++ AL + + +A K+ +M
Sbjct: 483 NIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREM 540
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 86/196 (43%), Gaps = 19/196 (9%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
I+ + ++ LI G CK + YA + + EM +G D ++Y I+ C+ K
Sbjct: 370 IAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAI 429
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+K+++++G +PS+ T I++ L K ++ A V++ + I
Sbjct: 430 ALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDL----------------LIK 473
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+V YN MI+ C A L K+E + PD T+ ++ K +
Sbjct: 474 GYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKA 533
Query: 388 MLVLNLMREMLSKGIV 403
L+REM+ +G++
Sbjct: 534 E---KLLREMIIRGLL 546
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 81/365 (22%), Positives = 142/365 (38%), Gaps = 52/365 (14%)
Query: 84 SEDHETDVDKVSEILRKRYPSPDKVVEAL--KCFC----FTWAKT------QTGYMHTPE 131
+ +H T +S L + +P V + C+C T+A + + GY T
Sbjct: 71 NNNHYTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTI 130
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T+N ++ + + K +KE + ++L LD + L++ L K
Sbjct: 131 TFNTLINGICLNGK-------LKEALHFHDHVIALGF------HLDQVSYRTLINGLCKI 177
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
A ++ K + ++ +++++I+ CK + A + EM SPD V++
Sbjct: 178 GETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTF 237
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I +C ++ EM K P V T +I++ AL K I A + M
Sbjct: 238 NSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMK 297
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ D YSSL + C+ +E A + + P
Sbjct: 298 QGVIPDVVTYSSL----------------MDGYCLVNEVNKAKHVFSTMSRLGVAP---- 337
Query: 371 HARSLKMCCH---KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKE 426
HA S + + K +M D L+L +EM KGI P T+ L + L K + A +
Sbjct: 338 HAHSYNIMINGLGKIKMVDE--ALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQ 395
Query: 427 RIDEL 431
+DE+
Sbjct: 396 LVDEM 400
>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
Length = 332
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 20/223 (8%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I+ +I CK AQ EM G P+ ++Y C I+ C + + L++M
Sbjct: 82 IYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDM 141
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
E P V+T +++A K +I EA ++Y +M + DT
Sbjct: 142 IESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDT---------------- 185
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ YN++I C S +A + + P+ T + CC KR+ DG + L
Sbjct: 186 ITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDG---IKL 242
Query: 394 MREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
+ EML +G+VP ++ L + L A++ E+++
Sbjct: 243 LHEMLRRGLVPDSVSYNTLIHGFCQAGDLNAAQDLFQEMISQV 285
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 87/216 (40%), Gaps = 23/216 (10%)
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M + G D V++ + CRE + + + M E G +P+ +T +++ + K
Sbjct: 1 MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFIL------SKAVRF-------------LIYNT 338
AL + KM D Y+++I L SKA L YN
Sbjct: 61 TDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNC 120
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
MI C + +A +L + + E + PD T + + ++ + L REML
Sbjct: 121 MIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAE---ELYREML 177
Query: 399 SKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLT 433
+ I P T+ L + K S L +AK D +++
Sbjct: 178 GRNIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVS 213
>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 123/279 (44%), Gaps = 28/279 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+T ++L+D L K V+ A VF K ++ ++ L+ G+C + D AQK +
Sbjct: 301 NTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVL 360
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M G +P SY I YC+ + + L EM EK P +T + +M L +
Sbjct: 361 DIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQV 420
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRFL-------------IY 336
+ EAL ++++M S L D YS+L+ L K A++ L +Y
Sbjct: 421 GRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLY 480
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML--VLNLM 394
N +I + + A +L K+ D +P T+ + K +K+G+ L
Sbjct: 481 NILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMI-----KGLLKEGLSDEAYELF 535
Query: 395 REMLSKGIVPQESTHKMLAEE-LEKKSLGNAKERIDELL 432
R+M G +P ++ ++ + L+ + A IDE++
Sbjct: 536 RKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMV 574
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 19/207 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++LI+ C+ +A + +MF+ G PD +++ I C E + ++ EM
Sbjct: 130 LNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMV 189
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+G +P VI+ + V++ L K+ AL++ KM+ C + +
Sbjct: 190 RRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPN----------------LV 233
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
Y T+I S C + +A+ L ++ + PD T++ L C + + ++ N
Sbjct: 234 AYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFN-- 291
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSL 421
EM+ + ++P T +L + L K+ +
Sbjct: 292 -EMVGRNVMPNTVTFTILVDGLCKEGM 317
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 127/276 (46%), Gaps = 24/276 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ ++++L++ L + N V A V K FK I + F+ LI+G C + A
Sbjct: 126 NVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLF 185
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM + G PD +SY+ I C+ + L++M+EKGCKP+++ T ++ +L K
Sbjct: 186 NEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKD 245
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAV-RFLIYNTMIS 341
+ +A+ + +M D YS+++ + ++ V R ++ NT+
Sbjct: 246 TLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTF 305
Query: 342 SACVRS--EEGNALKLR---QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
+ V +EG + R + + + +P+ T+ + C +M + VL++
Sbjct: 306 TILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDI--- 362
Query: 397 MLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
M+ KG P ++ +L +++ L AK + E+
Sbjct: 363 MVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEM 398
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/149 (19%), Positives = 66/149 (44%), Gaps = 1/149 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D S L+D L K + A K+ ++ I ++++LI G K + A++
Sbjct: 441 DLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELF 500
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++F G P +YT I+ +E + ++M++ G P+ + +++ +
Sbjct: 501 SKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQN 560
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ A+++ ++M D+S + L+
Sbjct: 561 QDSSTAIRLIDEMVGKRFSADSSTFQMLL 589
>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 133/316 (42%), Gaps = 48/316 (15%)
Query: 132 TYNAMVEALGKSKKF----GLMWELVKE-IDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
T+NA+++A K KF L +++K ID Y SL + RLD
Sbjct: 332 TFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDK-------- 383
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
A F+ KDC ++ LI G+CK+++ + + +EM G D
Sbjct: 384 --------AKQMFEFMVSKDCFP-DVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 434
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+YT I+ + D K+M G P ++T +I++ L ++ +AL+V++
Sbjct: 435 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD 494
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRS 347
M+ + D Y+++I + KA + + YNTMIS C +
Sbjct: 495 YMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKR 554
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG--MLVLNLMREMLSKGIVPQ 405
A L +K++ED P+ T+ + + ++DG L+REM S V
Sbjct: 555 LLQEAYALLKKMKEDGPLPNSGTYNTLI-----RAHLRDGDKAASAELIREMRSCRFVGD 609
Query: 406 ESTHKMLAEELEKKSL 421
ST ++A L L
Sbjct: 610 ASTIGLVANMLHDGRL 625
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 98/236 (41%), Gaps = 20/236 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
V+++ L KR A + K + I IF+ +I CK R D A KEM
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ V+Y+ I C + L +M EK P+++T ++ A K + E
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A K+Y+ M D YN++++ C+ A ++ + +
Sbjct: 349 AEKLYDDMIKRSIDPD----------------IFTYNSLVNGFCMHDRLDKAKQMFEFMV 392
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C PD T+ +K C KR++DG L REM +G+V T+ L + L
Sbjct: 393 SKDCFPDVVTYNTLIKGFCKSKRVEDGT---ELFREMSHRGLVGDTVTYTTLIQGL 445
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 120/286 (41%), Gaps = 34/286 (11%)
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAM 235
++V+ N + A KF ISL ++ +++LI+ +C+ + A +
Sbjct: 84 SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALL 143
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+M + G+ P V+ + + YC K + +M E G +P IT T ++H L
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRFL-------------IY 336
+ EA+ + ++M C + Y ++ L K A+ L I+
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIF 263
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT+I S C +AL L +++E +P+ T++ + C R D L+ +
Sbjct: 264 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDAS---QLLSD 320
Query: 397 MLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATEQRTF 441
M+ K I P T L + K+ A++ D+++ + + F
Sbjct: 321 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIF 366
>gi|225461712|ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Vitis vinifera]
Length = 464
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEI------------DELSNGYVSLAAMSTVMR 174
TP+ TYN ++ A S G W + E+ L +G + + R
Sbjct: 145 TPDVCTYNVLINACCSSGSLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCGDSRLDEAFR 204
Query: 175 -----------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGW 222
+ + + LM L + N ++ A+++ + + + L S I+ LI
Sbjct: 205 LKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAAL 264
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
K + D ++EM ++G PD V+Y I +C EKDF L+EM KGCKP V
Sbjct: 265 FKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVAKGCKPDV 324
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
I+ +++ L K + EA ++E M C D Y L L + ++F
Sbjct: 325 ISYNVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQF 375
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 79/197 (40%), Gaps = 23/197 (11%)
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+PD +Y I C EM K P+V+T ++ L ++ EA +
Sbjct: 145 TPDVCTYNVLINACCSSGSLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCGDSRLDEAFR 204
Query: 304 VYEKM-KSDDCLTDTSFYSSLIFILSKAVRFL-------------------IYNTMISSA 343
+ E M K + + Y+SL+ L + IY+T+I++
Sbjct: 205 LKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAAL 264
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
+ + +++ E+ CKPD T+ + C++K + VL EM++KG
Sbjct: 265 FKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVL---EEMVAKGCK 321
Query: 404 PQESTHKMLAEELEKKS 420
P ++ ++ L K+
Sbjct: 322 PDVISYNVIISGLCKEG 338
>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
[Coelocarpum swinglei]
Length = 429
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 119/279 (42%), Gaps = 31/279 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L + R + D SVL++ L K + +
Sbjct: 168 KWGLRPSVV-SFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKM 226
Query: 195 AHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A ++F + D + + F LI G CK + D A + K+M SPD ++Y
Sbjct: 227 DDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTL 286
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I C++ D ++ + EM+ KG KP I+ T ++ K + A + ++M ++
Sbjct: 287 IYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENI 346
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
D Y++L IS C +A K+ +++ +PD T+
Sbjct: 347 RLDDVAYTAL----------------ISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTM 390
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C K + G L++EM G VP T+ +L
Sbjct: 391 IINEFCKKGDVWTGS---KLLKEMQRDGHVPSVVTYNVL 426
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 105/261 (40%), Gaps = 51/261 (19%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
S F++L+H +CK A + + G P VS+ + Y R D +
Sbjct: 139 SLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLK 198
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------ 324
M G +P V T +++++ L K ++ +A +++++M + + +++LI
Sbjct: 199 SAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKN 258
Query: 325 -----------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+LS+++ + YNT+I C + + A L ++ KPD ++
Sbjct: 259 GRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISY 318
Query: 372 ARSLKMCC----------HKKRMKDGMLVLN----------------------LMREMLS 399
+ CC H+KRM + L+ ++REMLS
Sbjct: 319 TTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLS 378
Query: 400 KGIVPQESTHKMLAEELEKKS 420
G+ P T+ M+ E KK
Sbjct: 379 VGLRPDTGTYTMIINEFCKKG 399
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 14/161 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K +L+ E M + D + + L+D K
Sbjct: 282 TYNTLIYGLCKKGDLKQAQDLIDE-------------MRMKGLKPDKISYTTLIDGCCKE 328
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A++ + ++ I L + LI G C+ +S A+K ++EM G PD +Y
Sbjct: 329 GDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTY 388
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
T I +C++ D LKEMQ G PSV+T ++M+
Sbjct: 389 TMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 429
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 81/197 (41%), Gaps = 20/197 (10%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KE+ + G+ + + +C+E D R + + G +PSV++ +M+ +
Sbjct: 129 KEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRL 188
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ E ++ M + D YS L I+ C S+ +A +L
Sbjct: 189 GDLDEGFRLKSAMHASGVQPDVYTYSVL----------------INGLCKESKMDDANEL 232
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
++ + P+ T + C R+ L + + ++MLS+ + P T+ L
Sbjct: 233 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVD---LAMEVYKQMLSQSLSPDLITYNTLIYG 289
Query: 416 LEKKS-LGNAKERIDEL 431
L KK L A++ IDE+
Sbjct: 290 LCKKGDLKQAQDLIDEM 306
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G CK + A + K M Q D V+YT I C+E + L+EM
Sbjct: 318 YTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREML 377
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G +P T T++++ K ++ K+ ++M+ D + Y+ L+
Sbjct: 378 SVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLM 427
>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
Length = 820
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 101/242 (41%), Gaps = 23/242 (9%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
+++ + L+ WC+ +K++ A+K + EMF +G P V+ T + YCRE
Sbjct: 264 ATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVF 323
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI---- 326
+ M+ KGC+P+V T ++ ++Y+A+ + ++M+ D Y+ LI
Sbjct: 324 ESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCID 383
Query: 327 --LSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+ A R L YN +I + C + A L +E +P+ T
Sbjct: 384 GHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTF 443
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDE 430
+ C + + + +M+S G P T+ E L K K IDE
Sbjct: 444 NTVINGLCKGGKFD---VACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDE 500
Query: 431 LL 432
+L
Sbjct: 501 ML 502
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D +VL+D L K V A +F L+++ I +S F+ +I+G CK K D A
Sbjct: 404 DQYTYNVLIDALCKTGKVDEACSLFDGLEYRG-IRPNSVTFNTVINGLCKGGKFDVACTF 462
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+++M G +PD +Y+ FIE+ C+ K R+ + EM +K KPS + TIV+ L K
Sbjct: 463 LEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFK 522
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSS 322
+ A +++ +M S C D Y++
Sbjct: 523 ERNYGLATRIWGQMVSLGCSPDVVTYTT 550
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 89/204 (43%), Gaps = 19/204 (9%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
L+ G C R+ + +++M + G+ P +Y ++ +CRE+ + + L EM +
Sbjct: 235 ALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDN 294
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336
G P +TCT V++A + ++ A++V+E MK C + Y
Sbjct: 295 GLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNV----------------WTY 338
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N M+ C + A+ L ++ E +PD T+ ++ C ++ +L LM
Sbjct: 339 NAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLME- 397
Query: 397 MLSKGIVPQESTHKMLAEELEKKS 420
G+ + T+ +L + L K
Sbjct: 398 --GNGLAADQYTYNVLIDALCKTG 419
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 112/251 (44%), Gaps = 27/251 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L+ L +R + HA + L + + F+ LI G+C+T++ D AQ +M
Sbjct: 133 NALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPL 192
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
GFS D VSY IE +C +VD L+ +E +P + T ++ L A++ E
Sbjct: 193 RGFSQDAVSYAALIEGFCETG---RVDEALELFRELE-QPDMYTHAALVKGLCDARRGEE 248
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFI---------LSKAVRFLIYNTMISSA-------- 343
L + +KMK T Y++L+ + K + + N ++ A
Sbjct: 249 GLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVN 308
Query: 344 --CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C A+++ + ++ C+P+ T+ ++ C+ ++ M +L+ MRE G
Sbjct: 309 AYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMREC---G 365
Query: 402 IVPQESTHKML 412
+ P T+ +L
Sbjct: 366 VEPDVVTYNLL 376
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 109/288 (37%), Gaps = 41/288 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYNAMV+ K Y ++A + MR V + L++
Sbjct: 337 TYNAMVQGFCNVGKV----------------YKAMALLDQ-MRECGVEPDVVTYNLLIRG 379
Query: 192 NSV-AHAYKVF--LKFKDCISLSSQ--IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
+ H F L+ + L++ ++VLI CKT K D A + G P+
Sbjct: 380 QCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPN 439
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V++ I C+ F L++M GC P T + + L K K E L +
Sbjct: 440 SVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFID 499
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
+M D T Y+ +I L K + G A ++ ++ C P
Sbjct: 500 EMLQKDVKPSTVNYTIVIDRLFKERNY----------------GLATRIWGQMVSLGCSP 543
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
D T+ S++ C++ R+ + N++ EM GI+ + L +
Sbjct: 544 DVVTYTTSVRAYCNEGRLHEAE---NVVMEMKKGGIIVDAMAYNTLID 588
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 86/194 (44%), Gaps = 23/194 (11%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
+ ++ LI C+ +AQ+ + M + G+ PD ++ I YCR +
Sbjct: 128 TGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLF 187
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
+M +G ++ ++ + ++ EAL+++ +++ D T +++L+ L A
Sbjct: 188 DKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQPDMYT----HAALVKGLCDA 243
Query: 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
R EEG L + QK++E +P +A + + C +++ ++ +
Sbjct: 244 --------------RRGEEG--LYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKM 287
Query: 391 LNLMREMLSKGIVP 404
LN EM G+VP
Sbjct: 288 LN---EMFDNGLVP 298
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 238 MFQHGF-SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M+ HG +P G +Y I CR D R L M G +P T ++ + +
Sbjct: 119 MYHHGPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQ 178
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
Q+ A +++KM D Y++L I C AL+L
Sbjct: 179 QLDVAQDLFDKMPLRGFSQDAVSYAAL----------------IEGFCETGRVDEALELF 222
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+++E+ PD THA +K C +R ++G+ +L M+E+
Sbjct: 223 RELEQ----PDMYTHAALVKGLCDARRGEEGLYMLQKMKEL 259
>gi|357145431|ref|XP_003573640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
mitochondrial-like [Brachypodium distachyon]
Length = 523
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 143/341 (41%), Gaps = 45/341 (13%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-------------- 176
E ++ + A GK+ +F L W V+ + L G ++ AM VM R
Sbjct: 142 EAWHLAIWAAGKAGRFDLAWAAVRRM--LHRGVLTRRAMIIVMERYAAASELEKALKTFD 199
Query: 177 ---------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR- 226
D L+ L K ++ A ++ L K L+++ F++++ GWC
Sbjct: 200 VMEKFKVQADQAVFYSLLRALCKSKNIEDAEELLLMRKKFFPLTAEGFNIILDGWCNIII 259
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
A++ KEM + +PDG SYT + + + + EM+++G P +
Sbjct: 260 DVAEAKRVWKEMSSYCITPDGTSYTLMVSCFSKVGNLFDTLRVYDEMKKRGWTPGIGVYN 319
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----LIYNTMISS 342
+++ L + + +A K++ K+ + + Y+S+I L ++ + ++ MI
Sbjct: 320 SLVYVLTRENCMKDAKKIFSKIIDEGLQLNVETYNSMIIPLCESCKLDEARIMMGDMIMK 379
Query: 343 ACVRS---------EEG--NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
V + +EG L+L +K++E+ C P+ +T + + + V
Sbjct: 380 GIVPTILTYHAFLKQEGVDETLQLLRKMKENGCGPNSDTFLMLIDKFIQANESGNALRVW 439
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDEL 431
N EM+ I P S + + + L K + A E DE+
Sbjct: 440 N---EMIRYDISPAYSHYMAVIQGLVKHGCIPRALEYYDEM 477
>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
Length = 755
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 115/272 (42%), Gaps = 25/272 (9%)
Query: 154 KEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSS 212
K +DE ++ + L MS D A + +++ + V AY +FL+ D I +
Sbjct: 139 KRVDEATD--ILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNV 196
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
+ +I G CK + D A+ ++M G PD +Y C I Y +++V L+E
Sbjct: 197 VTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEE 256
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF------I 326
M G +P IT +++ L K + EA ++ M D + Y+ L+
Sbjct: 257 MSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGA 316
Query: 327 LSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
LS+ FL I+N M + ++ A+ + K+ + PD +
Sbjct: 317 LSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGA 376
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ C R+ D +L N +M+++G+ P
Sbjct: 377 LIDALCKLGRVDDAVLQFN---QMINEGVTPN 405
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 26/212 (12%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD--YTL-K 271
++ L+ G C T + D A K + M +G P+ +YT + YC+ R+VD Y+L +
Sbjct: 479 YNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKA---RRVDDAYSLFR 535
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
EM KG P V T ++H L + + EA ++Y M + T Y+
Sbjct: 536 EMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSR--TKCDIYT---------- 583
Query: 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
YN +++ C + A K+ +++ + D T + R +D M
Sbjct: 584 ----YNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAM--- 636
Query: 392 NLMREMLSKGIVPQESTHKMLAEEL-EKKSLG 422
+L + + G+VP T++++AE L E+ SLG
Sbjct: 637 DLFATISAYGLVPDVVTYRLIAENLIEEGSLG 668
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 138/347 (39%), Gaps = 85/347 (24%)
Query: 132 TYNAMVEALGKSKKFGLMW-ELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
TYN ++ + K W E+V+ ++E MST D ++L+D L K
Sbjct: 233 TYNCLIHGYLSTGK----WKEVVQMLEE----------MSTHGLEPDCITYALLLDYLCK 278
Query: 191 RNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWC-KTRKSD------------------- 229
A F F+ I I+ +L+HG+ K S+
Sbjct: 279 NGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRI 338
Query: 230 -------YAQKAMKE--------MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
YA+KAM E M Q G SPD VS+ I+ C+ +M
Sbjct: 339 FNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMI 398
Query: 275 EKGCKPSVITCTIVMHAL------EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---- 324
+G P++ + +++ L EKA++++ +E + C+ D F+++L+
Sbjct: 399 NEGVTPNIFVFSSLVYGLCTVGKWEKAEELF-----FEVLDQGICV-DAVFFNTLMCNLC 452
Query: 325 -------------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
++ VR + YNT+++ C+ A KL + + KP+
Sbjct: 453 NEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEF 512
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
T+ L+ C +R+ D +L REML KG+ P +T+ + L
Sbjct: 513 TYTILLRGYCKARRVDDAY---SLFREMLMKGVTPVVATYNTILHGL 556
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 19/187 (10%)
Query: 97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI 156
IL + Y +V +A F K G TYN ++ L ++ +F E
Sbjct: 516 ILLRGYCKARRVDDAYSLFREMLMK---GVTPVVATYNTILHGLFQTGRF-------SEA 565
Query: 157 DELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQI 214
+EL Y+++ T + D +++++ L K N V A+K+F + KD L S
Sbjct: 566 NEL---YLNMINSRT---KCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKD-PQLDSVT 618
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+++I K + + A + +G PD V+Y E+ E + D M+
Sbjct: 619 FNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAME 678
Query: 275 EKGCKPS 281
+ G P+
Sbjct: 679 KSGTAPN 685
>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
Length = 1056
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 19/226 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++VLI+G CK + A A ++ Q GF P V+Y+ I+ CR+ + K L+EM
Sbjct: 4 YNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMA 63
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+GC P+ +T +++AL + EA + E+M ++ C + +
Sbjct: 64 GRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPE----------------LI 107
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+ +I C E A ++ ++ + PD E H L C R+ +
Sbjct: 108 TFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWF---FF 164
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQRT 440
+++L G P T+ + + L K A + +LL + T
Sbjct: 165 QQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPT 210
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/340 (22%), Positives = 145/340 (42%), Gaps = 63/340 (18%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
QTG TY+A+++ L K+ K + L+++ + + + A S
Sbjct: 239 QTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMF----------------AFS 282
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ L + + + A ++ LK C+ + F+ L++G C+ R+ D A + M + G
Sbjct: 283 SLLHGLCQAHRLEEAIQL-LKAMPCVP-NVVCFNSLMNGLCQARRVDEAFELFDVMKESG 340
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE-KGCKPSVITCTIVMHALEKAKQIYEA 301
S D ++Y ++ C+ + + ++ M+ +GC P+V+T + ++ L A ++ +A
Sbjct: 341 CSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQA 400
Query: 302 LKVYEKMKSDDCLTDTSF-YSSLIFILSKA------------------------------ 330
+VYE+M + + ++ F Y+ L+ L KA
Sbjct: 401 WEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPE 460
Query: 331 VRFLI----------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
V FL+ YNT+++ +AL L + + E PD T L C
Sbjct: 461 VDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCK 520
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
++R+ D N+ + L +G P T+ L + L K +
Sbjct: 521 EQRILDAH---NVFKRALERGCRPNVVTYSTLIDGLSKMA 557
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/379 (21%), Positives = 148/379 (39%), Gaps = 59/379 (15%)
Query: 119 WAKTQTGYMHTPE--------------TYNAMVEALGKSK----KFGLMWELVKE----- 155
W + + +H+PE TYN +V L KS GL+ +++
Sbjct: 448 WRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPD 507
Query: 156 -------IDELSNGYVSLAAMSTVMRRL------DTRAMSVLMDTLVKRNSVAHAYKVFL 202
+D L L A + R L + S L+D L K + A ++
Sbjct: 508 VITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLA 567
Query: 203 KFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
K + ++ + + ++ G K + + A +++M G PD V+Y I+ + + +
Sbjct: 568 KMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQ 627
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
R+ L+EM E G PSV+T T + H L ++ + EA+++ + M + C + YS
Sbjct: 628 RLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYS 687
Query: 322 SLIFILSKAVR--------------------FLIYNTMISSACVRSEEGNALKLRQKIEE 361
S++ L KA R + Y+ +I C A + +++
Sbjct: 688 SIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIR 747
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
PD T + + C R+ G+ + M E K + + + M+ K
Sbjct: 748 AGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADI--YAYNAMINAYCLKGEF 805
Query: 422 GNAKERIDELLTHATEQRT 440
A ++E+ TH + T
Sbjct: 806 SAAYALLEEMKTHGIAKNT 824
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 108/262 (41%), Gaps = 37/262 (14%)
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEM 238
A S L+D L K + AY+ + + + F +LI+G C + D + M
Sbjct: 721 AYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGM 780
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
+ G D +Y I YC + +F L+EM+ G + +T IV+ AL +I
Sbjct: 781 AERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRI 840
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK 358
EA+ + + +DC + S YNT+I+S AL+L +
Sbjct: 841 DEAVSYFHSIP-EDCRDEIS-----------------YNTLITSLVASRRSEQALELLRA 882
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGM-------LVLNLMREMLSKGIVPQESTHKM 411
+ D PD C+ + DG+ + L++EM S+G P T+ +
Sbjct: 883 MVADGGSPD----------ACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTI 932
Query: 412 LAEELEK-KSLGNAKERIDELL 432
+ L K K L A + +E+L
Sbjct: 933 MISGLSKAKQLPLACDYFEEML 954
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 140/345 (40%), Gaps = 44/345 (12%)
Query: 46 LKFFDTQSPDEDFVIPSLASW---VESL----KLNEQSRISSHALSEDHETDVDKVSEIL 98
L +F+ + DE V P + ++ ++ L +++E + DV S IL
Sbjct: 703 LGYFEKMARDE-VVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFS-IL 760
Query: 99 RKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE 158
++ L+ FC + G YNAM+ A +F + L++E
Sbjct: 761 INGLCDAGRIDTGLELFC---GMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEE--- 814
Query: 159 LSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDV 217
M T +T +++ L + + A F +DC S ++
Sbjct: 815 ----------MKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEIS--YNT 862
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LI +R+S+ A + ++ M G SPD +Y ++ + L+EM+ +G
Sbjct: 863 LITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRG 922
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----- 332
P + T TI++ L KAKQ+ A +E+M + D YSSLI KA +
Sbjct: 923 HSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAW 982
Query: 333 -----------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
+Y+TM+ S C AL++ ++++ +C+P
Sbjct: 983 KLLRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEP 1027
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/284 (20%), Positives = 104/284 (36%), Gaps = 51/284 (17%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+++ L K + A++V + D +I VL+H C+ + D A +++
Sbjct: 110 GLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLL 169
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
GF+PD V+Y ++ + L+ + E P+V T TI + L KA +
Sbjct: 170 IGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTG 229
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI------------------------- 335
A + ++ M +T Y +LI L KA + I
Sbjct: 230 AYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLC 289
Query: 336 -----------------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
+N++++ C A +L ++E C D T+
Sbjct: 290 QAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYN 349
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
LK C +R+ + + LMR ++G P T L + L
Sbjct: 350 ILLKGLCKLRRIPEAYRHVELMRR--TEGCSPNVVTFSTLIQGL 391
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 100/242 (41%), Gaps = 50/242 (20%)
Query: 125 GYMHTPETYNAMVEALGKSKKF---GLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
G+ TYN MV+ L K+ + G++ +L+ E S ++ +
Sbjct: 171 GFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAE---------SFSSPTVF-------TF 214
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE--- 237
++ +D L K ++ AY+ F + +S ++ +D LI G CK K D A +++
Sbjct: 215 TIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNS 274
Query: 238 ---MFQ-----HGFS------------------PDGVSYTCFIEHYCREKDFRKVDYTLK 271
MF HG P+ V + + C+ + +
Sbjct: 275 QAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFD 334
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM-KSDDCLTDTSFYSSLIFILSKA 330
M+E GC VIT I++ L K ++I EA + E M +++ C + +S+LI L A
Sbjct: 335 VMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNA 394
Query: 331 VR 332
R
Sbjct: 395 GR 396
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 24/206 (11%)
Query: 126 YMHT-PE------TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT 178
Y H+ PE +YN ++ +L S++ EL++ AM D
Sbjct: 846 YFHSIPEDCRDEISYNTLITSLVASRRSEQALELLR-------------AMVADGGSPDA 892
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
+MD L K S A K+ + + S + + ++I G K ++ A +E
Sbjct: 893 CNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEE 952
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M + PD + Y+ I+ +C+ KVD K ++ G +P++ + ++ +L K +
Sbjct: 953 MLRKNLKPDAIVYSSLIDAFCKAD---KVDDAWKLLRSSGIEPTITMYSTMVDSLCKNRG 1009
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSL 323
+AL+V +MKS +C ++SL
Sbjct: 1010 TDKALEVIREMKSKNCEPGIHIWTSL 1035
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D R ++++ L K + A F + + + + ++ LI +CK K D A K +
Sbjct: 926 DLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLL 985
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ G P Y+ ++ C+ + K ++EM+ K C+P + T + A
Sbjct: 986 R---SSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAE 1042
Query: 296 KQIYEALKVYEKMK 309
++ EA+K+ ++
Sbjct: 1043 GRVDEAVKLVNDLQ 1056
>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
Length = 655
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/332 (19%), Positives = 148/332 (44%), Gaps = 47/332 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELS--------NGYVSLAAMSTVMRRL------- 176
+YNA+++ L +K++G + EL++E+ ++ N +S + + R+
Sbjct: 229 SYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQM 288
Query: 177 -------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRK 227
D R + ++D + K + A+++ + L + ++ L+ G C +
Sbjct: 289 AEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPS-YGLKPNVVCYNTLLKGLCSAER 347
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
+ ++ + EMF D V++ ++ +C+ +V L++M GC P VIT T
Sbjct: 348 WEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTT 407
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------- 333
V++ K I EA+ + + M + C +T Y+ ++ L A R+
Sbjct: 408 VINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQG 467
Query: 334 -----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
+ +NT+I+ C + A++L +++ + C PD +++ + + + +
Sbjct: 468 CPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEAL 527
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+LN+ M++KG+ P + +A L ++
Sbjct: 528 ELLNV---MVNKGMSPNTIIYSSIASALSREG 556
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 90/206 (43%), Gaps = 22/206 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +++ G C + A+ M +M Q G + +++ I C++ + LK+M
Sbjct: 440 YTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQML 499
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
GC P +I+ + V+ L KA + EAL++ M + +T YSS+ LS+ R
Sbjct: 500 VNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRIN 559
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++YN +ISS C R E A++ + C P+ T+ +
Sbjct: 560 KVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILI 619
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKG 401
+ + +K+ ++ E+ SKG
Sbjct: 620 RGLASEGFVKEAQ---EMLTELCSKG 642
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 86/218 (39%), Gaps = 22/218 (10%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
++ C + A + EM + G +P Y +E CR FR L+++ +G
Sbjct: 128 VVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG 187
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----- 332
C V C +V++A+ + +AL + + S C D Y++++ L A R
Sbjct: 188 CALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQ 247
Query: 333 --------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+ +NT+IS C ++ ++ E C PD +A +
Sbjct: 248 ELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGI 307
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C + +K +LN M S G+ P + L + L
Sbjct: 308 CKEGHLKVAHEILN---RMPSYGLKPNVVCYNTLLKGL 342
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/330 (18%), Positives = 123/330 (37%), Gaps = 46/330 (13%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
YNAMV ++ + L + N Y + + R ++D + +R
Sbjct: 93 YNAMVAGYCRAGQLESARRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRG 152
Query: 193 --SVAHAYKVFLK-------FKDCI-----------SLSSQIFDVLIHGWCKTRKSDYAQ 232
+ Y V L+ F+ + +L +++++ C D A
Sbjct: 153 CAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKAL 212
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
++++ G PD VSY ++ C K + V ++EM C P+++T ++ L
Sbjct: 213 HLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYL 272
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAVRF------ 333
+ +V +M C D Y+++I IL++ +
Sbjct: 273 CRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNV 332
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML--VL 391
+ YNT++ C +L ++ + C D T + C ++G++ V+
Sbjct: 333 VCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFC-----QNGLVDRVI 387
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEKKSL 421
L+ +ML G +P T+ + K+ L
Sbjct: 388 ELLEQMLVHGCMPDVITYTTVINGFCKEGL 417
>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
Length = 614
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 111/256 (43%), Gaps = 23/256 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D M L K + A ++F + ++ ++ ++ +F LI CK +
Sbjct: 313 DVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELH 372
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM G D V+Y CR +D + + ++EM+ G KP +T T ++ K
Sbjct: 373 REMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKE 432
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-------------------IY 336
++ A+++ ++M + D Y++LI LSK+ R + Y
Sbjct: 433 GELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTY 492
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
+I + C S+ KL ++++ KP T+ + C +MK+ ++LN
Sbjct: 493 TMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLN---A 549
Query: 397 MLSKGIVPQESTHKML 412
ML+ G+ P + T+ +L
Sbjct: 550 MLNIGVCPDDITYNIL 565
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 116/274 (42%), Gaps = 26/274 (9%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQK 233
R+ A S LM+ L SV AY +L+ D + ++ F++L+ ++ K A+
Sbjct: 209 RVPLPAWSDLMNRL---PSVPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARN 265
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
EM + G P V++ + C+ D + M + G P V T M L
Sbjct: 266 MFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLC 325
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF-----------------ILSKAVR--FL 334
KA +I +A++++E+M+ +T +++LI + ++ ++ +
Sbjct: 326 KAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLV 385
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN + + C + A + +++ + KPD T+ + C + + + + +
Sbjct: 386 AYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELD---MAMEMK 442
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
+EM +G+ E T+ L L K ERI
Sbjct: 443 QEMSDEGVALDEVTYTTLISGLSKSGRSVDSERI 476
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 113/265 (42%), Gaps = 25/265 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ + ++LM +++ +A A +F + + + + F+ L+ G CK + A
Sbjct: 243 EAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALR 302
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M + G +PD +Y F++ C+ + +EM+E+G P+ + T ++ A K
Sbjct: 303 GLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKE 362
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL--------------------I 335
+ L+++ +M + TD Y++L L + VR L
Sbjct: 363 GNVAAGLELHREMATRGIKTDLVAYNALANGLCR-VRDLKAANDIVEEMRNNGLKPDKVT 421
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
Y T+I C E A++++Q++ ++ D T+ + R D +L
Sbjct: 422 YTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILC--- 478
Query: 396 EMLSKGIVPQESTHKMLAEELEKKS 420
EM+ G+ P +T+ M+ + K S
Sbjct: 479 EMMEAGLEPDNTTYTMVIDAFCKNS 503
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 14/194 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
YNA+ L + + ++V+E+ +NG + D + L+D K
Sbjct: 386 AYNALANGLCRVRDLKAANDIVEEMR--NNGL-----------KPDKVTYTTLIDGFCKE 432
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A ++ + D ++L + LI G K+ +S +++ + EM + G PD +Y
Sbjct: 433 GELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTY 492
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T I+ +C+ D + LKEMQ KG KP V+T +VM+ Q+ A + M +
Sbjct: 493 TMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLN 552
Query: 311 DDCLTDTSFYSSLI 324
D Y+ L+
Sbjct: 553 IGVCPDDITYNILL 566
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 77/195 (39%), Gaps = 19/195 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY +++ K + + E+ +E MS LD + L+ L K
Sbjct: 421 TYTTLIDGFCKEGELDMAMEMKQE-------------MSDEGVALDEVTYTTLISGLSKS 467
Query: 192 NSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ ++ + + + + + ++I +CK K +KEM G P V+Y
Sbjct: 468 GRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTY 527
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ +C + D L M G P IT I++ K ++ +A E++KS
Sbjct: 528 NVVMNGFCILGQMKNADMLLNAMLNIGVCPDDITYNILLDGHCKHGKVRDA----EELKS 583
Query: 311 -DDCLTDTSFYSSLI 324
++D Y+SLI
Sbjct: 584 AKGMVSDFGLYTSLI 598
>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
Length = 553
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 115/251 (45%), Gaps = 25/251 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK--DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
++L++ L ++ + A + K C + +S ++ L+HG+CK +K D A + + M
Sbjct: 303 NILINFLCRQGLLGRAIDILEKMPMHGC-TPNSLSYNPLLHGFCKEKKMDRAIEYLDIMV 361
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G PD V+Y + C++ L ++ KGC P +IT V+ L K +
Sbjct: 362 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTE 421
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRF-------------LIYNTMI 340
A+K+ ++M+ D YSSL+ LS+ A++F + YN+++
Sbjct: 422 RAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIM 481
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
C + A+ + CKP T+ ++ ++ K+ L+L+ E+ S+
Sbjct: 482 LGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEA---LDLLNELCSR 538
Query: 401 GIVPQESTHKM 411
G+V + S ++
Sbjct: 539 GLVKKSSAEQV 549
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 110/259 (42%), Gaps = 31/259 (11%)
Query: 202 LKFKDCISLSSQIFDV-----LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256
KF + + I D+ LI G+C+ K+ A M+ + Q G PD ++Y I
Sbjct: 77 FKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISG 136
Query: 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316
YC+ + +D L+ + P V+T ++ L + ++ +A++V ++ +C D
Sbjct: 137 YCKSGE---IDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPD 193
Query: 317 TSFYSSLIFI------LSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQ 357
Y+ LI + +A++ L YN +I+ C A+K
Sbjct: 194 VITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLN 253
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
+ C+P+ TH L+ C R D L+ +ML KG P T +L L
Sbjct: 254 NMPSYGCQPNVITHNIILRSMCSTGRWMDAE---KLLSDMLRKGCSPSVVTFNILINFLC 310
Query: 418 KKS-LGNAKERIDELLTHA 435
++ LG A + ++++ H
Sbjct: 311 RQGLLGRAIDILEKMPMHG 329
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 123/279 (44%), Gaps = 29/279 (10%)
Query: 168 AMSTVMRRL------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIH 220
AM + R+L D ++L++ K + V A K+ + ++ S + ++VLI+
Sbjct: 178 AMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLIN 237
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G CK + D A K + M +G P+ +++ + C + + L +M KGC P
Sbjct: 238 GICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSP 297
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------LSKAVRFL 334
SV+T I+++ L + + A+ + EKM C ++ Y+ L+ + +A+ +L
Sbjct: 298 SVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYL 357
Query: 335 -------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
YNT++++ C + A+++ ++ C P T+ +
Sbjct: 358 DIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKV 417
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ + + L+ EM KG+ P T+ L L ++
Sbjct: 418 GKTERA---IKLLDEMRRKGLKPDIITYSSLVSGLSREG 453
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 114/261 (43%), Gaps = 24/261 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
D +VL+ K + +A +V + ++ ++ ++ C + K A + +
Sbjct: 126 DVITYNVLISGYCKSGEIDNALQVLDRMN--VAPDVVTYNTILRTLCDSGKLKQAMEVLD 183
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
Q PD ++YT IE C+E + L EM+ KG KP V+T ++++ + K
Sbjct: 184 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEG 243
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIF-------------ILSKAVR------FLIYN 337
++ EA+K M S C + ++ ++ +LS +R + +N
Sbjct: 244 RLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFN 303
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+I+ C + G A+ + +K+ C P+ ++ L C +K+M + L++ M
Sbjct: 304 ILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDI---M 360
Query: 398 LSKGIVPQESTHKMLAEELEK 418
+S+G P T+ L L K
Sbjct: 361 VSRGCYPDIVTYNTLLTALCK 381
>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Vitis vinifera]
Length = 665
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/374 (24%), Positives = 150/374 (40%), Gaps = 74/374 (19%)
Query: 129 TPETYNAMVEALGKSKKFG----LMWELVKEIDELSNGYVSLAAMSTVMR----RLDTRA 180
P+ Y+A++ L +K + LM +L++ + + + + + R +
Sbjct: 69 NPQLYSAIIHVLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSVFNVLSRLESSKFTPNV 128
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
VL+ + V A V+ K + + Q ++++ G K + D K +M
Sbjct: 129 FGVLIIAFSEMGLVEEALWVYYKMD--VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVA 186
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G SP+ V+Y I+ CR+ DF K EM EK P+V+ TI++ L +I E
Sbjct: 187 RGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISE 246
Query: 301 -----------------------------------ALKVYEKMKSDDCLTDTSFYSSLIF 325
AL++Y++M D L + + LI
Sbjct: 247 AESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILID 306
Query: 326 ILSK------AVRFLI-------------YNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
L K A +FLI YN +I C AL L +IE+ P
Sbjct: 307 GLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILP 366
Query: 367 DCETHARSLKMCCHKKRMK--DGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNA 424
D T++ +K C RM+ DG L++EM KG +P T+ L + K+ GN
Sbjct: 367 DVFTYSILIKGLCGVDRMEEADG-----LLQEMKKKGFLPNAVTYNTLIDGYCKE--GNM 419
Query: 425 KERIDELLTHATEQ 438
++ I E+ + TE+
Sbjct: 420 EKAI-EVCSQMTEK 432
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 29/227 (12%)
Query: 117 FTWAKTQTGY---MHTPETYNAMVEALGKS-----KKFGLMWELVKEIDELSNGYVSLAA 168
+T+ GY H + E LG FG++ + + + DE+ + L
Sbjct: 264 YTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLID 323
Query: 169 MSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDV 217
M++ + + L+D K +++ A +SL S+I + +
Sbjct: 324 MASFGVVPNIFVYNCLIDGYCKAGNLSEA----------LSLHSEIEKHEILPDVFTYSI 373
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LI G C + + A ++EM + GF P+ V+Y I+ YC+E + K +M EKG
Sbjct: 374 LIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKG 433
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+P++IT + ++ KA ++ A+ +Y +M L D Y++LI
Sbjct: 434 IEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALI 480
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 6/219 (2%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F LI G+CK K + A EM G PD V+YT I+ + ++ + ++ KEMQ
Sbjct: 441 FSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQ 500
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
E G P+V T + ++ L K +I +A+K++ D T S + L L +
Sbjct: 501 EAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTD--TTGSKTNELDRSLCSP-NHV 557
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+Y +I C A K + +PD T ++ ++D V+ L
Sbjct: 558 MYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRD---VMMLQ 614
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
++L GI+P S +++LA+ E+ + R E L+
Sbjct: 615 ADILKMGIIPNSSVYRVLAKGYEESGYLKSALRCSEDLS 653
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 110/265 (41%), Gaps = 25/265 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++L+ L + ++ A +F ++ L + ++ ++ G+CK A + +EM
Sbjct: 232 TILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLG 291
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ V++ I+ C+ + L +M G P++ ++ KA + E
Sbjct: 292 DGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSE 351
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMIS 341
AL ++ +++ + L D YS LI L R + YNT+I
Sbjct: 352 ALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLID 411
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C A+++ ++ E +P+ T + + C +M+ M L EM+ KG
Sbjct: 412 GYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAM---GLYTEMVIKG 468
Query: 402 IVPQESTHKMLAEELEKKSLGNAKE 426
++P + L + K GN KE
Sbjct: 469 LLPDVVAYTALIDGHFKD--GNTKE 491
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 21/143 (14%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+S L+D L K ++ A K+FL KT +D E+ +
Sbjct: 511 LSCLIDGLCKDGRISDAIKLFLA--------------------KT-GTDTTGSKTNELDR 549
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
SP+ V YT I+ C + K +M+ G +P V TC +++ +A + +
Sbjct: 550 SLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRD 609
Query: 301 ALKVYEKMKSDDCLTDTSFYSSL 323
+ + + + ++S Y L
Sbjct: 610 VMMLQADILKMGIIPNSSVYRVL 632
>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
Length = 1001
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 105/239 (43%), Gaps = 20/239 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L++ L K V A+ +F + IS + ++ LIHG CK + + M EM
Sbjct: 154 GTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVD 213
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
PD + ++ C+E + + M +G +P+V+T +M ++
Sbjct: 214 SKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDV 273
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A+KV++ M DC+ + + YNT+I+ C A+ L +++
Sbjct: 274 AVKVFDTMVHKDCVANV----------------ISYNTLINGYCKIQSVDKAMYLFEEMS 317
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
P+ T+ + CH R++D ++L EM+++G +P T++ L++ L K
Sbjct: 318 RQELTPNTVTYNTLIHGLCHVGRLQDA---ISLFHEMVARGQIPDLVTYRTLSDYLCKN 373
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 116/269 (43%), Gaps = 27/269 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ LMD RN V A KVF + KDC++ + ++ LI+G+CK + D A +EM
Sbjct: 259 NALMDGHCLRNEVDVAVKVFDTMVHKDCVA-NVISYNTLINGYCKIQSVDKAMYLFEEMS 317
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ +P+ V+Y I C + EM +G P ++T + L K + +
Sbjct: 318 RQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLD 377
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKA-----VRFLI--------------YNTMI 340
+A+ + + ++ + D Y++++ + +A R L YN MI
Sbjct: 378 KAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMI 437
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKP-DCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
C + A KL ++ ++ C P DC + + R + + + L+ EML+
Sbjct: 438 HGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFL----RNNEALRTIELLEEMLA 493
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERI 428
+G ST +L L L + ++I
Sbjct: 494 RGFSVDVSTTTLLVGMLSDDGLDQSVKQI 522
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/326 (18%), Positives = 131/326 (40%), Gaps = 40/326 (12%)
Query: 130 PETY--NAMVEALGKSKKFGLMWELVKEIDELS--NGYVSLAAMSTVMRRLDTRAMSVLM 185
P+ Y N ++ + ++ G + ++ ++ +L V+ + + ++ T+ +S
Sbjct: 614 PDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKMITKGIS--- 670
Query: 186 DTLVKRNSVAHAYKVFLKFKDCISLSSQ-----------IFDVLIHGWCKTRKSDYAQKA 234
+ NS+ HA ++K +L ++ +F ++ CK A
Sbjct: 671 PDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDV 730
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ M + G PD V+YT ++ +C + + M KGC P+V + I+++ +
Sbjct: 731 VDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQ 790
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLI 335
+++ +A+ + E+M + DT Y++LI L R +
Sbjct: 791 IQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVT 850
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
Y ++ C A+ L + IE + D + ++ C ++ +L
Sbjct: 851 YRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAAR---DLFS 907
Query: 396 EMLSKGIVPQESTHKMLAEELEKKSL 421
+ SKG+ P T+ ++ L K+ L
Sbjct: 908 NLSSKGLQPDVRTYNIMIHGLCKRGL 933
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 86/213 (40%), Gaps = 19/213 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D + LMD R+ + A KVF + K C+ + + +++LI+G+C+ ++ D A
Sbjct: 742 DVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVP-NVRSYNILINGYCQIQRMDKAMGL 800
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+++M G D V+Y I C + EM G P ++T I++ L K
Sbjct: 801 LEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCK 860
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
+ EA+ + + ++ + D L+YN I C E A
Sbjct: 861 NHHLAEAMVLLKAIEGSNLDAD----------------ILVYNIAIDGMCRAGELEAARD 904
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
L + +PD T+ + C + + +
Sbjct: 905 LFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEA 937
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 88/200 (44%), Gaps = 23/200 (11%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
++I+ C + D+A A+ ++ + G PD ++T I C E + + +M +
Sbjct: 85 IVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGE 144
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV--RFL 334
G +P+V+T +++ L K +Q+ EA ++ +M ++K + +
Sbjct: 145 GFQPNVVTYGTLINGLCKDRQVTEAFNIFSEM------------------ITKGISPNIV 186
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN++I C E + L ++ + PD T + C + + + V+++
Sbjct: 187 TYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDM- 245
Query: 395 REMLSKGIVPQESTHKMLAE 414
M+ +G+ P T+ L +
Sbjct: 246 --MIHRGVEPNVVTYNALMD 263
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 11/180 (6%)
Query: 153 VKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL-- 210
V + L NGY + ++ M + + L V N++ H + +D ISL
Sbjct: 290 VISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFH 349
Query: 211 ----SSQIFDVLIHG-----WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
QI D++ + CK R D A +K + + PD YT ++ CR
Sbjct: 350 EMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAG 409
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
+ + KG +P+V T I++H L K + EA K++ +M + C + Y+
Sbjct: 410 ELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYN 469
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 11/177 (6%)
Query: 153 VKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL-- 210
V+ + L NGY + M M L+ ++ L+ V N++ H + + I+L
Sbjct: 778 VRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFH 837
Query: 211 ----SSQIFD-----VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
S QI D +L+ CK A +K + D + Y I+ CR
Sbjct: 838 EMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAG 897
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318
+ + KG +P V T I++H L K + EA K++ KM +D ++++
Sbjct: 898 ELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSNST 954
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 26/227 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT---LK 271
F+ L+ KT+ ++M G PD + I C +VD+ L
Sbjct: 48 FNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCH---LNRVDFAFSALA 104
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
++ + G +P T T ++ L +I EAL +++KM + F +++
Sbjct: 105 KILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGE------GFQPNVV------- 151
Query: 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
Y T+I+ C + A + ++ P+ T+ + C K V
Sbjct: 152 ---TYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKH---VT 205
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEKKSL-GNAKERIDELLTHATE 437
LM EM+ I+P T + + L K+ + A + +D ++ E
Sbjct: 206 TLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVE 252
>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
Length = 748
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 126/289 (43%), Gaps = 33/289 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY A+++ K K +KE L N + + ++ + L D L K
Sbjct: 430 TYTALIDGYCKEGK-------MKEAFSLHNQMLQMGLTPNIV------TYTALADGLCKC 476
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A ++ + + + L+ ++ L++G CK D A K MK+M GF PD V+Y
Sbjct: 477 GEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTY 536
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T ++ YC+ ++ + L++M ++ +P+V+T ++M+ + + + K+ + M
Sbjct: 537 TTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLE 596
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ + + YN++I C+R+ ++ + + PD T
Sbjct: 597 KGIMPNAT----------------TYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNT 640
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
+ +K C + MK+ L R+M+ KG S++ L + K+
Sbjct: 641 YNILIKGHCKARNMKEAWF---LHRDMVGKGFNLTVSSYNALIKGFYKR 686
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 124/274 (45%), Gaps = 30/274 (10%)
Query: 192 NSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ + A KVF++F + + ++ ++++ H C+ + A + + +M G PD +SY
Sbjct: 232 DGIKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISY 291
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ I YC+ + ++V ++EMQ KG KP+ T V+ L K ++ EA +V +M S
Sbjct: 292 STVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMIS 351
Query: 311 DDCLTDTSFYSSLI------FILSKAVR-------------FLIYNTMISSACVRSEEGN 351
+ D Y++LI +S A R F+ Y +I C + G
Sbjct: 352 EGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLC---QTGR 408
Query: 352 ALKLRQKIEEDSCK---PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
++ + E CK PD T+ + C + +MK+ +L +ML G+ P T
Sbjct: 409 VMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEA---FSLHNQMLQMGLTPNIVT 465
Query: 409 HKMLAEELEK-KSLGNAKERIDELLTHATEQRTF 441
+ LA+ L K + A E + E+ E +
Sbjct: 466 YTALADGLCKCGEVDTANELLHEMCRKGLELNIY 499
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 132/311 (42%), Gaps = 36/311 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G P TYN ++ L K+ K +++E+ +S G D + L
Sbjct: 318 GLKPNPYTYNGVILLLCKTGKVAEAERVLREM--ISEGIAP-----------DGVIYTTL 364
Query: 185 MDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D K +V+ AY++F + K IS + +I G C+T + A K EM
Sbjct: 365 IDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRL 424
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD V+YT I+ YC+E ++ +M + G P+++T T + L K ++ A +
Sbjct: 425 EPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANE 484
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSAC 344
+ +M + Y+SL+ L KA + Y T++ + C
Sbjct: 485 LLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYC 544
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
E A +L +++ + +P T + C ++DG L++ ML KGI+P
Sbjct: 545 KSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGE---KLLKWMLEKGIMP 601
Query: 405 QESTHKMLAEE 415
+T+ L ++
Sbjct: 602 NATTYNSLIKQ 612
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 49/226 (21%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN++V L K+ +L+K+ M D + LMD K
Sbjct: 500 TYNSLVNGLCKAGNIDQAVKLMKD-------------MEVAGFHPDAVTYTTLMDAYCKS 546
Query: 192 NSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF------- 243
+ A+++ + D + + F+VL++G+C + + +K +K M + G
Sbjct: 547 REMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTY 606
Query: 244 ----------------------------SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
PDG +Y I+ +C+ ++ ++ + ++M
Sbjct: 607 NSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVG 666
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
KG +V + ++ K K+ EA +++E+M+ + + D Y+
Sbjct: 667 KGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYN 712
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 115/267 (43%), Gaps = 25/267 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKSDYAQKAM 235
D ++ MD + K V +F + L + + +LIHG K ++
Sbjct: 527 DLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIF 586
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M Q GF+ D +Y ++ +C+ K L+EM+EK +P+V T ++ L K
Sbjct: 587 HAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKI 646
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTMIS---------- 341
++ EA ++E+ KS + YSSLI K R +LI M+
Sbjct: 647 DRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTW 706
Query: 342 ----SACVRSEEGN-ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
A V++EE N AL Q ++E C P+ T++ + C ++ + ++
Sbjct: 707 NSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFV---FWQD 763
Query: 397 MLSKGIVPQESTHKMLAEELEKKSLGN 423
M +G+VP T+ + L K +GN
Sbjct: 764 MQKQGLVPNVVTYTTMISGLAK--VGN 788
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 107/249 (42%), Gaps = 49/249 (19%)
Query: 120 AKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTR 179
A Q G+ YNA+V+ KS K +E+++E+ E V + T
Sbjct: 588 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKE-----------KCVQPTVAT- 635
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
++D L K + + AY +F + K I L+ ++ LI G+ K + D A ++EM
Sbjct: 636 -YGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEM 694
Query: 239 FQHGFSPD-----------------------------------GVSYTCFIEHYCREKDF 263
+ G +P+ +Y+ I CR + +
Sbjct: 695 MKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKY 754
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
K ++MQ++G P+V+T T ++ L K I +A ++E+ K++ + D + +++L
Sbjct: 755 NKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNAL 814
Query: 324 IFILSKAVR 332
I +S A R
Sbjct: 815 IEGMSNANR 823
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/310 (20%), Positives = 131/310 (42%), Gaps = 36/310 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
YN M+ G + +F ++L++ + E + +V+ + + ++ L K+
Sbjct: 321 AYNTMIMGYGSAGRFEDAYKLLERLRER-------GCIPSVV------SFNSILTCLGKK 367
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
V A +F K +S ++++I C + + A + + EM P+ ++
Sbjct: 368 RKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVN 427
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
++ C+ + + + ++GC P +T ++ L K Q+ EA +++EKM
Sbjct: 428 IMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDA 487
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+ Y+SLI F I+ R E+G+ K+ +++ CKPD
Sbjct: 488 GHNANPVVYTSLI------RNFFIHG--------RKEDGH--KIFKELIRRGCKPDLTLL 531
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431
+ ++ G ++ +R S G +P ++ +L L K G A+E +
Sbjct: 532 NTYMDCVFKAGEVEKGRMIFEDIR---SYGFLPDVRSYSILIHGLTKA--GQARETSN-- 584
Query: 432 LTHATEQRTF 441
+ HA +Q+ F
Sbjct: 585 IFHAMKQQGF 594
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 119/289 (41%), Gaps = 57/289 (19%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRL-------------- 176
Y ++ AL ++++ EL++++ E+ GY V + +T++R L
Sbjct: 181 AYTVLIGALAEARRPERALELLRQMQEV--GYEVGVHLFTTLVRALAREGQVADALALVD 238
Query: 177 ---------DTRAMSVLMDTLVKRNSVAHAYKVFLKFK------DCISLSSQIFDVLIHG 221
D +V +D K +V A+K F + K D +S +S I+ +
Sbjct: 239 EVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVL---- 294
Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
CK + A++ +M P +Y I Y F L+ ++E+GC PS
Sbjct: 295 -CKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPS 353
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR--------- 332
V++ ++ L K +++ EAL ++E MK D ++S Y+ +I +L R
Sbjct: 354 VVSFNSILTCLGKKRKVDEALSLFEVMKK-DAEPNSSTYNIIIDMLCLGGRVEEAYRILD 412
Query: 333 ----------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
L N M+ C + A K+ + + C PDC T+
Sbjct: 413 EMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTY 461
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 84/199 (42%), Gaps = 14/199 (7%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
Y+++++ GK V IDE Y+ L M + + L+D LVK
Sbjct: 671 YSSLIDGFGK----------VGRIDE---AYLILEEMMKKGLTPNVYTWNSLLDALVKAE 717
Query: 193 SVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
+ A F K+ ++ + +LI+G C+ +K + A ++M + G P+ V+YT
Sbjct: 718 EINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYT 777
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
I + + + + G P + ++ + A + EA +V+E+ +
Sbjct: 778 TMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLR 837
Query: 312 DCLTDTSFYSSLIFILSKA 330
C + SL+ L+K+
Sbjct: 838 GCRINIKSCISLLDALNKS 856
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 107/285 (37%), Gaps = 64/285 (22%)
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
L +Q L + R+ D A A+ M + F P +YT I + +
Sbjct: 141 GLPNQACAHLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALE 200
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD-------------DCLT 315
L++MQE G + V T ++ AL + Q+ +AL + +++K DC
Sbjct: 201 LLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFG 260
Query: 316 ----------------------DTSFYSSLIFILSKAVRF-------------------L 334
D Y+S+I++L KA R
Sbjct: 261 KAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAY 320
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YNTMI +A KL +++ E C P + S+ C KKR D L L
Sbjct: 321 AYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSF-NSILTCLGKKRKVDEALSLF-- 377
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKE---RIDELLTHAT 436
E++ K P ST+ ++ + L LG E RI + + HA+
Sbjct: 378 -EVMKKDAEPNSSTYNIIIDML---CLGGRVEEAYRILDEMEHAS 418
>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
filifolia]
Length = 431
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 117/279 (41%), Gaps = 31/279 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L + R + D SVL++ L K N +
Sbjct: 170 KWGLRPSVV-SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKM 228
Query: 195 AHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A K+F + + + F LI G CK + D A + K+M PD ++Y
Sbjct: 229 DDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I C++ D ++ + + EM KG +P IT T ++ K + A + ++M ++
Sbjct: 289 IYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENI 348
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
D Y++L IS C +A K+ +++ KPD T+
Sbjct: 349 RLDDVAYTAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTM 392
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C K + G L++EM G VP T+ +L
Sbjct: 393 IINEFCKKGDVWKGS---KLLKEMQRDGHVPSVVTYNVL 428
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 106/261 (40%), Gaps = 51/261 (19%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
S F++L+H +CK AQ + + G P VSY + Y R D +
Sbjct: 141 SLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 200
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------ 324
M G +P V T +++++ L K ++ +A K++++M + + +++LI
Sbjct: 201 SAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKN 260
Query: 325 -----------FILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+LS+++ + YNT+I C + + A L ++ +PD T+
Sbjct: 261 GRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITY 320
Query: 372 ARSLKMCC----------HKKRMKDGMLVLN----------------------LMREMLS 399
+ CC H+KRM + L+ ++REMLS
Sbjct: 321 TTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 380
Query: 400 KGIVPQESTHKMLAEELEKKS 420
G+ P T+ M+ E KK
Sbjct: 381 VGLKPDARTYTMIINEFCKKG 401
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 14/161 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K +L+ E MS + D + L+D K
Sbjct: 284 TYNTLIYGLCKKGDLKQANDLIDE-------------MSMKGLQPDKITYTTLIDGCCKE 330
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A++ + ++ I L + LI G C+ +S A+K ++EM G PD +Y
Sbjct: 331 GDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTY 390
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
T I +C++ D K LKEMQ G PSV+T ++M+
Sbjct: 391 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G CK D A + K M Q D V+YT I C+E + L+EM
Sbjct: 320 YTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREML 379
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G KP T T++++ K +++ K+ ++M+ D + Y+ L+
Sbjct: 380 SVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 81/197 (41%), Gaps = 20/197 (10%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+E+ + G+ + + +C++ D R + + G +PSV++ +M+ +
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ E ++ M + D YS L I+ C ++ +A KL
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVL----------------INGLCKENKMDDANKL 234
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
++ + P+ T + C R+ L + + ++MLS+ ++P T+ L
Sbjct: 235 FDEMLVKALVPNGVTFTTLIDGHCKNGRVD---LAMEIYKQMLSQSLLPDLITYNTLIYG 291
Query: 416 LEKKS-LGNAKERIDEL 431
L KK L A + IDE+
Sbjct: 292 LCKKGDLKQANDLIDEM 308
>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 592
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 114/274 (41%), Gaps = 27/274 (9%)
Query: 163 YVSLAAMSTVMRRL----DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDV 217
Y ++ ++S M L D +++++++ N V + V K FK + F
Sbjct: 90 YSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTT 149
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LI G C K A +M GF P+GV+Y I C+ + R L+ M +K
Sbjct: 150 LIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKN 209
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------- 329
C+P+VIT ++ L K +Q+ EAL ++ +M + + S Y+S+I L K
Sbjct: 210 CEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVA 269
Query: 330 -----------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+I+ T++ + C A + + + +PD T+ +
Sbjct: 270 TLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGH 329
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C + M + V + M+ KG P ++ L
Sbjct: 330 CLRSEMDEADKVFD---TMVRKGCAPNVISYSTL 360
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 152/365 (41%), Gaps = 50/365 (13%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKF----GLMWELVKE------- 155
+V EAL F AK G TYN+++ L K ++ LM E+V
Sbjct: 229 QVNEALNIFSEMIAK---GISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVV 285
Query: 156 -----IDEL-SNGYVSLA--AMSTVMRR---LDTRAMSVLMDTLVKRNSVAHAYKVF--L 202
+D L G V++A + +++R D + LMD R+ + A KVF +
Sbjct: 286 IFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTM 345
Query: 203 KFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
K C + + + LI+G+CK ++ D A +EM Q P+ V+Y I C
Sbjct: 346 VRKGC-APNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGR 404
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
R EM G P ++T I++ L K + + +A+ + + ++ + D Y+
Sbjct: 405 LRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNI 464
Query: 323 LI-----------------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDS 363
+I + SK + Y MI+ C++ A KL +++ D
Sbjct: 465 VIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDG 524
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGN 423
C PD T+ + R + + + L++EML +G ST ++ E L L
Sbjct: 525 CSPDDCTYNLITR---GFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDGLDQ 581
Query: 424 AKERI 428
+ ++I
Sbjct: 582 SVKQI 586
>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
Length = 1512
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 17/233 (7%)
Query: 97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI 156
IL Y K+ EA + F K G + TYN ++ AL +S + +L E
Sbjct: 1265 ILINGYCKDQKIDEAFRFFEEMRPK---GLKPSTVTYNTLIGALCQSGRVRTAQKLFVE- 1320
Query: 157 DELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS-QIF 215
M T + L VL+D L K + A +F K + ++F
Sbjct: 1321 ------------MQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVF 1368
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+L+ G C+ K + A K E+ ++G PD ++Y I C + + L +M+E
Sbjct: 1369 SILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEE 1428
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS 328
KGC P IT +++ L K +I+EA+++ E+M++ + D + S L+ + S
Sbjct: 1429 KGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLAS 1481
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 125/308 (40%), Gaps = 36/308 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G+ T+ +++ L K K G ++ L M + D + L
Sbjct: 1185 GFSPDAFTFTILIDGLCKEGKVGEAQQI-------------LELMRHKGKEPDILTYNTL 1231
Query: 185 MDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
M+ L + A K+F D I L+ +++LI+G+CK +K D A + +EM G
Sbjct: 1232 MNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGL 1291
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
P V+Y I C+ R EMQ G + T +++ L K + EA+
Sbjct: 1292 KPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMD 1351
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSAC 344
+++ +K + + +S L+ + +A + + YN +I+ C
Sbjct: 1352 LFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLC 1411
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ A+KL ++EE C PD T ++ + + + + L+ EM ++ P
Sbjct: 1412 NKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHE---AIQLLEEMRNRNFSP 1468
Query: 405 QESTHKML 412
E+ ML
Sbjct: 1469 DEAVTSML 1476
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 135/330 (40%), Gaps = 43/330 (13%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE---------------IDELSNGYVSL 166
T+ G + +TY ++ L K++K GL +L ++ ID L ++
Sbjct: 1043 TKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDALCKDGMTT 1102
Query: 167 AAMSTVMRRL------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLI 219
A+ + D S LMD L + + A + F + + IS ++ LI
Sbjct: 1103 EALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLI 1162
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
HG + + M GFSPD ++T I+ C+E + L+ M+ KG +
Sbjct: 1163 HGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKE 1222
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTM 339
P ++T +M+ L Q+ +A K++E + +D + F YN +
Sbjct: 1223 PDILTYNTLMNGLCLVGQLEDATKLFESL-ADRGIKLNVFS---------------YNIL 1266
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I+ C + A + +++ KP T+ + C R++ L EM +
Sbjct: 1267 INGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQ---KLFVEMQT 1323
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERID 429
G + ST+ +L + L K G+ +E +D
Sbjct: 1324 CGQFLKLSTYCVLLDGLCKN--GHLEEAMD 1351
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 109/281 (38%), Gaps = 24/281 (8%)
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
T + L+ ++ K + + ++ K D I ++LIH C R
Sbjct: 946 TDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFG 1005
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
+ GF PD V+ T ++ E EM +KG T I+++ L KA+
Sbjct: 1006 GFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKAR 1065
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIYN 337
+ A+K++EKMK +C D Y +I L K ++Y+
Sbjct: 1066 KTGLAIKLHEKMKG-NCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYS 1124
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+++ C AL+ +++E D T+ + K+ LNL M
Sbjct: 1125 SLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNL---M 1181
Query: 398 LSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQ 438
+ +G P T +L + L K+ ++I EL+ H ++
Sbjct: 1182 VDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKE 1222
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 22/226 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F +LI G CK K AQ+ ++ M G PD ++Y + C + +
Sbjct: 1193 FTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLA 1252
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
++G K +V + I+++ K ++I EA + +E+M+ T Y++LI L ++ R
Sbjct: 1253 DRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVR 1312
Query: 333 --------------FL---IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
FL Y ++ C A+ L Q I++ KP+ E + L
Sbjct: 1313 TAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILL 1372
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
C ++++ + E+ G+ P + +L L K +
Sbjct: 1373 DGMCRAGKLEEAWKQFD---EISKNGLEPDTIAYNILINGLCNKGM 1415
>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 109/248 (43%), Gaps = 22/248 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQ 240
S ++D K +V AY ++ + L + + F L+ G+CK R+ A+ M +
Sbjct: 273 SAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVK 332
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ Y C I +C+ + + L EM+ P V T TI+++ L Q+ E
Sbjct: 333 FGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAE 392
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A ++++KMK++ ++ YN++I C AL L ++
Sbjct: 393 ANRLFQKMKNERIFPSSA----------------TYNSLIHGYCKEYNMEQALDLCSEMT 436
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+P+ T + + C+ + +K M L EM KGIVP T+ L + K++
Sbjct: 437 ASGVEPNIITFSTLIDGYCNVRDIKAAM---GLYFEMTIKGIVPDVVTYTALIDAHFKEA 493
Query: 421 LGNAKERI 428
N KE +
Sbjct: 494 --NMKEAL 499
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 117/271 (43%), Gaps = 29/271 (10%)
Query: 166 LAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCK 224
L+ M ++ D ++L++ L + VA A ++F K K+ I SS ++ LIHG+CK
Sbjct: 362 LSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCK 421
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
+ A EM G P+ ++++ I+ YC +D + EM KG P V+T
Sbjct: 422 EYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVT 481
Query: 285 CTIVMHALEKAKQIYEALKVYEKM---------KSDDCLTDTSFYSSLIFILSKAVRF-- 333
T ++ A K + EAL++Y M + CL D + LS A+ F
Sbjct: 482 YTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGR---LSVAIDFYQ 538
Query: 334 -----------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
+ + +I C A + + PD ++ LK +K
Sbjct: 539 ENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEK 598
Query: 383 RMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
R+ D M+ L +M+ GI+P +++LA
Sbjct: 599 RITDTMM---LQCDMIKTGILPNLLVNQLLA 626
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/288 (19%), Positives = 113/288 (39%), Gaps = 42/288 (14%)
Query: 166 LAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC------------------ 207
L+ ++ ++RR ++ V ++ R V + F+ F+ C
Sbjct: 168 LSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTS 227
Query: 208 --ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
I + I+ + I C+ K + A+K + M +HG P+ +Y+ I+ YC+ + R+
Sbjct: 228 LGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQ 287
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
KE+ P+V+ ++ KA+++ A ++ M + Y+ LI
Sbjct: 288 AYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIH 347
Query: 326 ILSKAVRFL-------------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
K+ L Y +I+ C+ + A +L QK++ + P
Sbjct: 348 GHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFP 407
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
T+ + C + M+ L+L EM + G+ P T L +
Sbjct: 408 SSATYNSLIHGYCKEYNMEQA---LDLCSEMTASGVEPNIITFSTLID 452
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 22/218 (10%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
+++G + R+ D + M G PD Y + ++ + K + L EM G
Sbjct: 170 ILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLG 229
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------------F 325
KP+V TI + L + ++ EA K++E MK L + YS++I +
Sbjct: 230 IKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAY 289
Query: 326 ILSKAV-------RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
L K + +++ T++ C E A L + + P+ + +
Sbjct: 290 GLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGH 349
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C M + + L+ EM S + P T+ +L L
Sbjct: 350 CKSGNMLEA---VGLLSEMESLNLSPDVFTYTILINGL 384
>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 694
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 122/298 (40%), Gaps = 36/298 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY +++AL K K +KE L L M+ + + S LMD
Sbjct: 344 TYTILIDALCKEGK-------LKEAKNL------LGVMTKEGVKPNVVTYSTLMDGYCLV 390
Query: 192 NSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V +A ++F ++ S ++++I+G CK + D A ++EM P+ V+Y
Sbjct: 391 GEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTY 450
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I+ C+ +KE+ +G VIT T ++ L K + + +A+ ++ KMK
Sbjct: 451 NSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKE 510
Query: 311 DDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGN 351
+ Y++LI L K R YN MI C
Sbjct: 511 RGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDE 570
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
AL ++ K+E++ C PD T ++ K L+ EM++KG++ + H
Sbjct: 571 ALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAE---KLLHEMIAKGLLHFRNFH 625
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 19/207 (9%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+++ +I G CK + + A EM G PD ++Y+ I +C L EM
Sbjct: 274 MYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEM 333
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
K P V T TI++ AL K ++ EA + M + + YS
Sbjct: 334 TLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYS------------ 381
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
T++ C+ E NA ++ + + P ++ + C K + + M NL
Sbjct: 382 ----TLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAM---NL 434
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKS 420
+REML K +VP T+ L + L K
Sbjct: 435 LREMLHKNVVPNTVTYNSLIDGLCKSG 461
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 14/191 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN++++ L KS + +L+KE+ + D + L+D L K
Sbjct: 449 TYNSLIDGLCKSGRITSALDLMKELHHRG-------------QPADVITYTSLLDGLCKN 495
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
++ A +F+K K+ I + + LI G CK + AQK + + G D +Y
Sbjct: 496 QNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTY 555
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I C+E + +M++ GC P +T I++ +L + + +A K+ +M +
Sbjct: 556 NVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIA 615
Query: 311 DDCLTDTSFYS 321
L +F+
Sbjct: 616 KGLLHFRNFHG 626
>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
venustus]
Length = 418
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 109/250 (43%), Gaps = 20/250 (8%)
Query: 156 IDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI- 214
+ +L G+ +AM + D SVL++ L K + + A ++F + D + + +
Sbjct: 184 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVT 243
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F LI G CK + D A + K++ GFSPD ++Y I C++ D ++ + EM
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMS 303
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
K KP IT T ++ K + A + ++M ++ D Y++L
Sbjct: 304 MKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTAL----------- 352
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
IS C +A K+ + + KPD T+ + C K +K G L+
Sbjct: 353 -----ISGLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGS---KLL 404
Query: 395 REMLSKGIVP 404
+EM G VP
Sbjct: 405 KEMXRDGHVP 414
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 130/317 (41%), Gaps = 50/317 (15%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRL----DTRAMSVLM 185
+T ++E L K K F L+W KEI L GY SL + +M R + R +
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWGFYKEI--LECGYPASLYFFNILMHRFCKEGEMRLAQSVF 159
Query: 186 DTLVK---RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
D + K R SV F+ L+ G+ + D + M G
Sbjct: 160 DAITKWGLRPSVVS------------------FNTLMSGYIRLGDLDEGFRLKSAMHASG 201
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
PD +Y+ I C+E + + EM + G P+ +T T ++ K ++ A+
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAM 261
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILS-----KAVRFLI--------------YNTMISSA 343
++Y+++ S D Y++LIF L K R LI Y T+I +
Sbjct: 262 EIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTLIDGS 321
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C + A + R+++ +++ + D + + C + R D ++R MLS G+
Sbjct: 322 CKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE---KMLRGMLSVGLK 378
Query: 404 PQESTHKMLAEELEKKS 420
P T+ M+ E KK
Sbjct: 379 PDNGTYTMIINEFCKKG 395
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 14/154 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K +L+ E MS + D + L+D K
Sbjct: 278 TYNTLIFGLCKKGDLKQARDLIDE-------------MSMKELKPDKITYTTLIDGSCKE 324
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A++ + K+ I L + LI G C+ +S A+K ++ M G PD +Y
Sbjct: 325 GDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRGMLSVGLKPDNGTY 384
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
T I +C++ D + LKEM G P V+T
Sbjct: 385 TMIINEFCKKGDVKTGSKLLKEMXRDGHVPCVVT 418
>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 418
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 130/314 (41%), Gaps = 44/314 (14%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W +E L GY + ++LM + VK
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWGFYEE--SLECGYPA-----------SLYFFNILMHSFVK 148
Query: 191 RNSVAHAYKVFLKFKDCI---SLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+ A VF D I SL + F+ L++G+ K D + M G P
Sbjct: 149 EGEIRLAQSVF----DAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQP 204
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D +Y+ I C+E + EM + G P+ +T T ++ K ++ A+++Y
Sbjct: 205 DVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIY 264
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVR 346
++M S D Y++LI+ L K + Y T+I C
Sbjct: 265 KQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKE 324
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
+ A + R+++ +++ + D + + C + R D ++REMLS G+ P+
Sbjct: 325 GDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLKPEI 381
Query: 407 STHKMLAEELEKKS 420
T+ M+ E KK
Sbjct: 382 GTYTMIINEFCKKG 395
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 89/388 (22%), Positives = 154/388 (39%), Gaps = 60/388 (15%)
Query: 51 TQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVE 110
TQ D + +++ES L + I + L+++H+ R + + KV+E
Sbjct: 61 TQRSDIYVFSGLITAYLESGFLRDA--IECYRLTKEHK---------FRVPFDTCRKVLE 109
Query: 111 ---ALKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM---------WEL-- 152
LK F W + GY + +N ++ + K + L W L
Sbjct: 110 HLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRP 169
Query: 153 -VKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF 201
V + L NGY+ L AM + D SVL++ L K + + A ++F
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELF 229
Query: 202 LKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
+ D + + + F LI G CK + D A + K+M S D ++Y I C++
Sbjct: 230 DEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKK 289
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
D ++ + EM KG KP IT T ++ K + A + ++M ++ D Y
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
++L IS C +A K+ +++ KP+ T+ + C
Sbjct: 350 TAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQEST 408
K + G L++EM G +P T
Sbjct: 394 KGDVWTGS---KLLKEMQRDGYMPSVVT 418
>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
Length = 688
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 21/233 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC--ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
++D + K+ A + K ++ I + I+ +I CK + AQ EM
Sbjct: 223 GTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQ 282
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ G PD +Y I +C + + L+EM E+ P V+T +++A K + +
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFF 342
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
EA ++Y++M + +T + YN+MI C + A + +
Sbjct: 343 EAAELYDEMLPRGIIPNT----------------ITYNSMIDGFCKQDRLDAAEDMFYLM 386
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C PD T + C KR+ DGM L+ EM +G+V T+ L
Sbjct: 387 ATKGCSPDVFTFTTLIDGYCGAKRIDDGM---ELLHEMPRRGLVANTVTYNTL 436
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 102/247 (41%), Gaps = 24/247 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F++LI +C K +A ++ + G PD V++T + C E + +M
Sbjct: 117 FNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMF 176
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
E C+P+V+T T +M+ L + +I EA+ + ++M D Y +++ + K
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236
Query: 330 -AVRFL--------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
A+ L IY+ +I S C +A L +++E PD T+
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLT 433
+ C R D L++EML + I P T+ L K+ A E DE+L
Sbjct: 297 IVGFCSSGRWSDAE---QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLP 353
Query: 434 HATEQRT 440
T
Sbjct: 354 RGIIPNT 360
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 128/330 (38%), Gaps = 51/330 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYNA++ A K KF EL E+ L G + +T + ++D K+
Sbjct: 327 TYNALINAFVKEGKFFEAAELYDEM--LPRGIIP-----------NTITYNSMIDGFCKQ 373
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ + A +F + K C S F LI G+C ++ D + + EM + G + V+
Sbjct: 374 DRLDAAEDMFYLMATKGC-SPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVT 432
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y I +C D ++M G P ++TC ++ L ++ +AL++++ M+
Sbjct: 433 YNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 492
Query: 310 SDDCLTDTSF-----------YSSLIFILSKAVRFL-------------------IYNTM 339
D S Y+ LI L +FL Y++M
Sbjct: 493 KSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 552
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I C +S A ++ + S P+ T + C R+ DG L L EM
Sbjct: 553 IDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDG---LELFCEMGR 609
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERID 429
+GIV + L K +GN +D
Sbjct: 610 RGIVADAIIYITLIYGFRK--VGNINGALD 637
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++LI G K A++ +EM G PD ++Y+ I+ C++ + M
Sbjct: 514 YNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMG 573
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
K P+V+T +++ KA ++ + L+++ +M + D Y +LI+ K
Sbjct: 574 SKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNIN 633
Query: 335 ----IYNTMISSA 343
I+ MISS
Sbjct: 634 GALDIFQEMISSG 646
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 14/179 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L KF EL +E+ G V DT S ++D L K+
Sbjct: 513 TYNILICGLINEGKFLEAEELYEEMPH--RGIVP-----------DTITYSSMIDGLCKQ 559
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ + A ++F+ S + F+ LI+G+CK + D + EM + G D + Y
Sbjct: 560 SRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIY 619
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
I + + + +EM G P IT ++ +++ A+ + E ++
Sbjct: 620 ITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 678
>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
Length = 987
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 129/291 (44%), Gaps = 39/291 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN+++ +GL + E +EL NG ++ TV+ + L++ K
Sbjct: 356 TYNSLI--------YGLCGGKLDEAEELLNGAIARGFTPTVI------TFTNLINGYCKA 401
Query: 192 NSVAHAYKV--FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A +V + +C L Q + VLI+ K + A++ + EMF +G +P+ V+
Sbjct: 402 ERIDDALRVKSNMISSNC-KLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVT 460
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
YT I+ YC+ K M+ +GC P+ T +++ L + K++++A+ + KM+
Sbjct: 461 YTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQ 520
Query: 310 SDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
D ++ V + Y T+I C + E NA +L + +E++ PD +
Sbjct: 521 EDG--------------ITPGV--ITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQ 564
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ C R ++ L + KG+V + T+ L + K
Sbjct: 565 AYNVLTDALCKSGRAEEAYSFL------VRKGVVLTKVTYTSLVDGFSKAG 609
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/310 (20%), Positives = 119/310 (38%), Gaps = 23/310 (7%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
Q G + YN + +AL KS + + + + + + + +T +
Sbjct: 556 QNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAA 615
Query: 183 VLMDTLVKRNSVA--HAYKVFL-------KFKDCISLSSQI-----------FDVLIHGW 222
VL++ +V A + Y V L K + +S+ Q+ + ++I
Sbjct: 616 VLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEM 675
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
K K D+A+ EM G P +YT FI YC+ + ++ + EM+ G P V
Sbjct: 676 IKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDV 735
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISS 342
+T I ++ I A ++M C + Y L+ K + S
Sbjct: 736 VTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVDTSG 795
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
E +L +++ + P T++ + C R+++ ++L+ ML K I
Sbjct: 796 MWNWIELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLD---HMLGKDI 852
Query: 403 VPQESTHKML 412
P E + ML
Sbjct: 853 SPNEEIYTML 862
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 95/239 (39%), Gaps = 33/239 (13%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC--FIEHYCREKDFRKVDYTLKE 272
++ +I +CK A + + + G D +YTC + YCR D RK + L
Sbjct: 182 YNTMIMAYCKKGSLAIAHRYFCLLRESGMQMD--TYTCNALLLGYCRTSDLRKACWLLMM 239
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M GC+ + + TI++ L +A+ + EAL + M D C + Y+ LI L K R
Sbjct: 240 MPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGR 299
Query: 333 F-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
YN MI C +AL ++ +E++ C PD T+
Sbjct: 300 IHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNS 359
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
+ C K + L+ +++G P T L K ERID+ L
Sbjct: 360 LIYGLCGGKLDE----AEELLNGAIARGFTPTVITFTNLINGYCK------AERIDDAL 408
>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
thaliana]
Length = 1184
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 45/293 (15%)
Query: 158 ELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC 207
EL NGY M R + + L+D L K + A ++ +
Sbjct: 869 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK- 927
Query: 208 ISLSSQIF--DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
I L IF + +++G CK+ + A K + E G + D V+YT ++ YC+ + K
Sbjct: 928 IGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDK 987
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
LKEM KG +P+++T ++M+ ++ L+ EK+ L +
Sbjct: 988 AQEILKEMLGKGLQPTIVTFNVLMNGF----CLHGMLEDGEKL--------------LNW 1029
Query: 326 ILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK----PDCETHARSLKMCC 379
+L+K + +N+++ C+R N LK I +D C PD +T+ +K C
Sbjct: 1030 MLAKGIAPNATTFNSLVKQYCIR----NNLKAATAIYKDMCSRGVGPDGKTYENLVKGHC 1085
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE-LEKKSLGNAKERIDEL 431
+ MK+ L +EM KG ST+ +L + L++K A+E D++
Sbjct: 1086 KARNMKEAWF---LFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQM 1135
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 20/240 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + ++ + + A K+F + F + S F LI+G+CK A +
Sbjct: 828 DVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVH 887
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M Q G SP+ V+YT I+ C+E D + L EM + G +P++ T +++ L K+
Sbjct: 888 NHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKS 947
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
I EA+K+ + ++ DT + Y T++ + C E A ++
Sbjct: 948 GNIEEAVKLVGEFEAAGLNADT----------------VTYTTLMDAYCKSGEMDKAQEI 991
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+++ +P T + C ++DG +LN ML+KGI P +T L ++
Sbjct: 992 LKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNW---MLAKGIAPNATTFNSLVKQ 1048
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 122/312 (39%), Gaps = 44/312 (14%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
GY +Y+ +V + + +W+L++ VM+R + S +
Sbjct: 719 GYTPDVISYSTVVNGYCRFGELDKVWKLIE-----------------VMKRKGLKPNSYI 761
Query: 185 MDTLV----KRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+++ + +A A + F + + I + ++ LI G+CK A K EM
Sbjct: 762 YGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMH 821
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+PD ++YT I +C+ D + EM KG +P +T T +++ KA +
Sbjct: 822 SRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMK 881
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIYNTMI 340
+A +V+ M C + Y++LI L K YN+++
Sbjct: 882 DAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIV 941
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+ C A+KL + E D T+ + C M +++EML K
Sbjct: 942 NGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ---EILKEMLGK 998
Query: 401 GIVPQESTHKML 412
G+ P T +L
Sbjct: 999 GLQPTIVTFNVL 1010
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 116/270 (42%), Gaps = 28/270 (10%)
Query: 195 AHAYKVFLKFKD---CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
A A VF +F + C +++S ++++IH C+ + A + M G++PD +SY+
Sbjct: 671 ATAIIVFREFPEVGVCWNVAS--YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYS 728
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ YCR + KV ++ M+ KG KP+ ++ L + ++ EA + + +M
Sbjct: 729 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 788
Query: 312 DCLTDTSFYSSLIFILSK------AVRF-------------LIYNTMISSACVRSEEGNA 352
L DT Y++LI K A +F L Y +IS C + A
Sbjct: 789 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 848
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
KL ++ +PD T + C MKD V N M+ G P T+ L
Sbjct: 849 GKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHN---HMIQAGCSPNVVTYTTL 905
Query: 413 AEELEKKS-LGNAKERIDELLTHATEQRTF 441
+ L K+ L +A E + E+ + F
Sbjct: 906 IDGLCKEGDLDSANELLHEMWKIGLQPNIF 935
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN++V L KS G + E VK + E A ++ DT + LMD K
Sbjct: 936 TYNSIVNGLCKS---GNIEEAVKLVGEFEA-----AGLNA-----DTVTYTTLMDAYCKS 982
Query: 192 NSVAHAYKVFLKFKDCISLSSQ----IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+ A ++ K+ + Q F+VL++G+C + +K + M G +P+
Sbjct: 983 GEMDKAQEIL---KEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNA 1039
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
++ ++ YC + + K+M +G P T ++ KA+ + EA ++++
Sbjct: 1040 TTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE 1099
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFL 334
MK S YS LI K +FL
Sbjct: 1100 MKGKGFSVSVSTYSVLIKGFLKRKKFL 1126
>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Brachypodium distachyon]
Length = 673
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 125/291 (42%), Gaps = 33/291 (11%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
E YN M+ A+ K ++ ++E+ S GY + D + ++ L
Sbjct: 414 EGYNGMICAVCKDRRMDDAMRFMQEMK--SQGY-----------KPDICTYNTIIYHLCN 460
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
N + A +F + + ++ ++ LIH + A +M HG S D VS
Sbjct: 461 NNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVS 520
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y I+ CR+ + + L EM EKG KP+ ++ +++ L K +++ +AL++ ++M
Sbjct: 521 YNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEML 580
Query: 310 SDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
+ + D + YNT+I+ C AL L +K+ + D
Sbjct: 581 NQELTPD----------------IVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADII 624
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
T+ + C + + D ++LN ++ GI P E T ++ + +KS
Sbjct: 625 TYNILISWHCKARLLHDASMLLN---RAVTSGITPNERTWGIMVQNFVRKS 672
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 114/246 (46%), Gaps = 27/246 (10%)
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
+ + +LIHG CK + A K ++EM GF+P V+YT + +CR + + L+
Sbjct: 343 AHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLE 402
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF------ 325
M +KG ++ ++ A+ K +++ +A++ ++MKS D Y+++I+
Sbjct: 403 VMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNN 462
Query: 326 -----------ILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
+L + V + YNT+I + +A+ L + C D ++
Sbjct: 463 QMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYN 522
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK-----SLGNAKER 427
+K C + +++L+ EM KGI P ++ +L EL K +L +KE
Sbjct: 523 GLIKALCRDGNVDRSIMLLS---EMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEM 579
Query: 428 IDELLT 433
+++ LT
Sbjct: 580 LNQELT 585
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 18/223 (8%)
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
+D + ++ F + C+ ++D A ++ M +HG PD V Y I C +
Sbjct: 165 RDRVPPTTFTFSIAARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVN 224
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ L EM GC V T ++H L ++ EA ++ ++M C+ + Y L+
Sbjct: 225 EAATLLDEMFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLL 284
Query: 325 FILSKA---------------VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
L A + +++NT+I + + A +L + + C PD
Sbjct: 285 KGLCLASQVEEARTMLGRVPELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAH 344
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
T++ + C R+ M L+REM KG P T+ +L
Sbjct: 345 TYSILIHGLCKLGRLGSAM---KLLREMEDKGFAPSIVTYTIL 384
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 125/289 (43%), Gaps = 35/289 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY+ ++ L K + G +L++E+++ G+ A S V ++L+ + R
Sbjct: 345 TYSILIHGLCKLGRLGSAMKLLREMED--KGF----APSIV-------TYTILLHSFC-R 390
Query: 192 NSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
N + + L+ +S++ + ++ +I CK R+ D A + M+EM G+ PD +
Sbjct: 391 NGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICT 450
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y I H C + +Y + + +G + IT ++HAL + +A+ + M
Sbjct: 451 YNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMV 510
Query: 310 SDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
C D + YN +I + C ++ L ++ E KP+
Sbjct: 511 LHGCSLD----------------IVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNV 554
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
++ + C +R++D L L +EML++ + P T+ L L K
Sbjct: 555 SYNLLISELCKTRRVRDA---LELSKEMLNQELTPDIVTYNTLINGLCK 600
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 91/211 (43%), Gaps = 19/211 (9%)
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
L+ +F+ +I K A + + M G PD +Y+ I C+
Sbjct: 306 LNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKL 365
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
L+EM++KG PS++T TI++H+ + +++ ++ ++ SD L+
Sbjct: 366 LREMEDKGFAPSIVTYTILLHSFCR-NGMWDNIRAMLEVMSDKGLS-------------- 410
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ YN MI + C +A++ Q+++ KPD T+ + C+ +M++
Sbjct: 411 -MNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEY 469
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
L +L +G+V T+ L L +
Sbjct: 470 ---LFENLLHEGVVANAITYNTLIHALLRNG 497
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 92/271 (33%), Gaps = 53/271 (19%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ +IH C + A + EMF G S D ++ + C R+ + M
Sbjct: 209 LYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRM 268
Query: 274 QEKGCKPSVITCTIVMHALEKAKQI-------------------------------YEAL 302
+GC P+ IT ++ L A Q+ EA
Sbjct: 269 MIRGCVPNAITYGFLLKGLCLASQVEEARTMLGRVPELNVVLFNTVIGRCLLDGKLKEAA 328
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSA 343
++YE M S C D YS LI L K R + Y ++ S
Sbjct: 329 ELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSF 388
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C N + + + + + E + + C +RM D M M+EM S+G
Sbjct: 389 CRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAM---RFMQEMKSQGYK 445
Query: 404 PQESTHKMLAEELEKKSLGNAKERIDELLTH 434
P T+ + L + E + E L H
Sbjct: 446 PDICTYNTIIYHLCNNNQMEEAEYLFENLLH 476
>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 774
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/358 (20%), Positives = 139/358 (38%), Gaps = 71/358 (19%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA +Q GY HT + Y+ +++ LG +K+F ++ +L+ +I E G ++ + +
Sbjct: 89 FQWAGSQKGYCHTFDVYHVLIDKLGAAKEFKVIDKLLLQIKE--EGIAFRESLFICIMKY 146
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKA 234
RA N A ++ L K C + + ++V++ A
Sbjct: 147 YGRA-----------NLPGQATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANV 195
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
EM G P ++ ++ C + L++M + GC P+ + ++HAL K
Sbjct: 196 FYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSK 255
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LI 335
++ EALK+ E+M CL D ++ +I+ L + R +
Sbjct: 256 RDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDIT 315
Query: 336 YNTMISSAC---------------------------------VRSEEGNALKLRQKIEED 362
Y +++ C R +E NA L K+ ++
Sbjct: 316 YGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHFTILINGYVKSGRLDEANAF-LYDKMIKN 374
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C+PD T + C K M ++++ +M + G P T+ L + KK+
Sbjct: 375 GCRPDVFTFNTLIHGLCKKGLMGSA---VDMVNDMSANGCTPNLITYTTLLDGFCKKN 429
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 22/221 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ LIHG CK A + +M +G +P+ ++YT ++ +C++ + Y L EM
Sbjct: 383 FNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMS 442
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
KG + +++ +++ AL K ++ +AL + +M C D +++LIF L K R
Sbjct: 443 AKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKE 502
Query: 333 -----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ YNT+I + ALKL + C D T+ +
Sbjct: 503 DALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLI 562
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
K C + L L EM+ K +VP + +L L
Sbjct: 563 KAFCKLGATEKA---LGLFDEMVRKDLVPSNISCNLLINGL 600
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 21/220 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKE-MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F +LI+G+ K+ + D A + + M ++G PD ++ I C++ + +M
Sbjct: 347 FTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDM 406
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
GC P++IT T ++ K Q+ EA V +M + +
Sbjct: 407 SANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAK----------------GFELNI 450
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ YN ++ + C + AL + ++ + CKPD T + C R +D L L
Sbjct: 451 MGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDA---LAL 507
Query: 394 MREMLSKGIVPQESTHKMLAEE-LEKKSLGNAKERIDELL 432
R+ML G++ T+ L L ++ A + ++++L
Sbjct: 508 YRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDML 547
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 26/227 (11%)
Query: 206 DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
D + ++ ++ LIH + + A K + +M G D ++Y I+ +C+ K
Sbjct: 514 DGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEK 573
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
EM K PS I+C ++++ L + ++ AL++ M D
Sbjct: 574 ALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDV-------- 625
Query: 326 ILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
+ YN++I+ C A L K++ + +PD T+ + C
Sbjct: 626 --------VTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFD 677
Query: 386 DGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK-------SLGNAK 425
D L L+ + +P + T +L K+ S G AK
Sbjct: 678 DAYL---LLLRGVENAFIPNDVTWYILVSNFIKEIGKENGISFGTAK 721
>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 137/339 (40%), Gaps = 45/339 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ + K +E+V+ + EL D + ++L+ L+ +
Sbjct: 265 TYNTIIRGMCKEGMVDRAFEMVRNL-ELKGS------------EPDVISYNILLRALLNQ 311
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
K+ K F + + + +LI C+ K + A +K M + G +PD SY
Sbjct: 312 GKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSY 371
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I +CRE L+ M GC P ++ V+ L K + +AL+++ K+
Sbjct: 372 DPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGE 431
Query: 311 DDCLTDTSFYSSLIFIL---SKAVRFL----------------IYNTMISSACVRSEEGN 351
C ++S Y+++ L +R L YN+MIS C
Sbjct: 432 VGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDE 491
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A +L + P T+ L C R++D +N++ M+ G P E+T+ +
Sbjct: 492 AFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDA---INVLESMVGNGCRPNETTYTV 548
Query: 412 LAEEL-------EKKSLGNAKERIDELLTHATEQ--RTF 441
L E + E L N RID + ++ ++ RTF
Sbjct: 549 LIEGIGFAGYRAEAMELANDLVRIDAISEYSFKRLHRTF 587
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 98/217 (45%), Gaps = 22/217 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI+G+CK + D A + + M FSPD V+Y I C L ++
Sbjct: 161 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL 220
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
C+P+VIT TI++ A + EALK+ ++M S D Y+++I + K
Sbjct: 221 SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVD 280
Query: 330 ----AVRFL----------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
VR L YN ++ + + + KL K+ + C P+ T++ +
Sbjct: 281 RAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILI 340
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C ++++ M +L LM+E KG+ P ++ L
Sbjct: 341 TTLCRDGKIEEAMNLLKLMKE---KGLTPDAYSYDPL 374
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 20/204 (9%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
+ H C++ + ++ M + G++PD + T I+ + ++ K + E+ EK
Sbjct: 95 IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKA-VRVMEILEKF 153
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337
+P V +++ K +I +A +V ++M+S D DT + YN
Sbjct: 154 GQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDT----------------VTYN 197
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
MI S C R + ALK+ ++ D+C+P T+ ++ + + + L LM EM
Sbjct: 198 IMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEA---LKLMDEM 254
Query: 398 LSKGIVPQESTHKMLAEELEKKSL 421
LS+G+ P T+ + + K+ +
Sbjct: 255 LSRGLKPDMFTYNTIIRGMCKEGM 278
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 91/218 (41%), Gaps = 23/218 (10%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LI G+ R A + M+ + + G PD +Y I +C+ L M+ K
Sbjct: 130 LIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKD 188
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------------- 324
P +T I++ +L ++ ALKV ++ SD+C Y+ LI
Sbjct: 189 FSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEAL 248
Query: 325 ----FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+LS+ ++ YNT+I C A ++ + +E +PD ++ L+
Sbjct: 249 KLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRAL 308
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ + ++G LM +M S+ P T+ +L L
Sbjct: 309 LNQGKWEEGE---KLMTKMFSEKCDPNVVTYSILITTL 343
>gi|346703736|emb|CBX24404.1| hypothetical_protein [Oryza glaberrima]
Length = 1765
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 133/326 (40%), Gaps = 42/326 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G++ T TY +++ LGK + L E+ + G+ + + + +
Sbjct: 1212 GFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRK--RGFSP-----------NVQIYNSV 1258
Query: 185 MDTLVKRNSVAHAYKVFLK--FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
+D L K S A V LK F F+ LI G C A+ ++E +
Sbjct: 1259 IDALCKCRSATQAM-VILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRE 1317
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
+P+ +SYT I +C + L EM +G P V+T ++H L A ++ EAL
Sbjct: 1318 LNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEAL 1377
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL--------------------IYNTMISS 342
V EKM D + Y+ LI L K R L +Y T+I
Sbjct: 1378 IVREKMTERQVFPDVNIYNVLISGLCKK-RMLPAAKNILEEMLEKNVQPDEFVYATLI-D 1435
Query: 343 ACVRSEE-GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
+RSE G+A K+ + +E PD + +K C M + +L ++ MR++ G
Sbjct: 1436 GFIRSENLGDARKIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKV---G 1492
Query: 402 IVPQESTHKMLAEELEKKSLGNAKER 427
+P E T+ + K+ N R
Sbjct: 1493 CIPDEFTYTTVISGYAKQGNLNGALR 1518
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 112/253 (44%), Gaps = 22/253 (8%)
Query: 184 LMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L++ L K+ + +FL+ K S + QI++ +I CK R + A +K+MF G
Sbjct: 1223 LINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQAMVILKQMFASG 1282
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
PD +++ I C E RK ++ L+E + P+ ++ T ++H ++ A
Sbjct: 1283 CDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVAS 1342
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362
+ +M D + +LI L V + AL +R+K+ E
Sbjct: 1343 DLLVEMMGRGHTPDVVTFGALIHGL----------------VVAGKVSEALIVREKMTER 1386
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE-LEKKSL 421
PD + + C KKRM N++ EML K + P E + L + + ++L
Sbjct: 1387 QVFPDVNIYNVLISGLC-KKRMLPA--AKNILEEMLEKNVQPDEFVYATLIDGFIRSENL 1443
Query: 422 GNAKERIDELLTH 434
G+A+ +I E + H
Sbjct: 1444 GDAR-KIFEFMEH 1455
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 95/244 (38%), Gaps = 20/244 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D L+ LV V+ A V K + + I++VLI G CK R A+ +
Sbjct: 1356 DVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNIL 1415
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM + PD Y I+ + R ++ + M+ KG P +++C ++ +
Sbjct: 1416 EEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCNAMIKGYCQF 1475
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ EA+ M+ C+ D Y T+IS + AL+
Sbjct: 1476 GMMSEAILCMSNMRKVGCIPDE----------------FTYTTVISGYAKQGNLNGALRW 1519
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ + CKP+ T++ + C + D L M ++ + P T+ +L
Sbjct: 1520 LCDMIKRKCKPNVVTYSSLINGYC---KTGDTDFAEGLFANMQAEALSPNVVTYTILIGS 1576
Query: 416 LEKK 419
L KK
Sbjct: 1577 LFKK 1580
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 30/223 (13%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
VL+ G C R+ + K ++ + G P V Y I+ YCR D + L EM+ K
Sbjct: 1152 VLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETK 1211
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK---AVRF 333
G P+++T +++ L K + + ++ +M+ + Y+S+I L K A +
Sbjct: 1212 GFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQA 1271
Query: 334 LI----------------YNTMISSACVRSEEGNALK----LRQKIEEDSCKPDCETHAR 373
++ +NT+I+ C EG+ K LR+ I + P+ ++
Sbjct: 1272 MVILKQMFASGCDPDIITFNTLITGLC---HEGHVRKAEHFLREAIRRE-LNPNQLSYTP 1327
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ C + + M+ +L+ EM+ +G P T L L
Sbjct: 1328 LIHGFCMRGEL---MVASDLLVEMMGRGHTPDVVTFGALIHGL 1367
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 83/194 (42%), Gaps = 4/194 (2%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +I G+ K + A + + +M + P+ V+Y+ I YC+ D + MQ
Sbjct: 1500 YTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGLFANMQ 1559
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ P+V+T TI++ +L K ++ A +E M + C + L+ L+ +
Sbjct: 1560 AEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCV 1619
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
I + +++ V ++ L + +K+ D P + + C +++ L+
Sbjct: 1620 INSICCNTSEVHGKDA-LLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREA---LDFK 1675
Query: 395 REMLSKGIVPQEST 408
M KG VP T
Sbjct: 1676 NRMAKKGYVPNPIT 1689
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 24/195 (12%)
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTI 287
D ++ M G +P + Y K + ++E+ G P V C
Sbjct: 1058 DAVDDTLQSMSLAGAAPTRACLGALVAAYADAGMLGKATKMCERVREQYGSLPEVTHCNR 1117
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV-- 345
++ L + ++ +A K+Y++M D D YS+ + ++ C+
Sbjct: 1118 LLKLLVEQRRWDDARKLYDEMLGKDSGADN--YSTCV--------------LVRGLCLER 1161
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
R EEG LKL + C P + + C + M G+L+L EM +KG +P
Sbjct: 1162 RVEEG--LKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLG---EMETKGFLPT 1216
Query: 406 ESTHKMLAEELEKKS 420
T+ L L KK
Sbjct: 1217 LVTYGSLINWLGKKG 1231
>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
Length = 447
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 125/288 (43%), Gaps = 37/288 (12%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKA 234
D + +L+ L +A A+ +F ++ S I ++VL+ G+CK ++ AQ
Sbjct: 126 DLESYHILLSALSDSGRMAEAHALF----SAMTCSPDIMTYNVLMDGYCKIGQTYEAQSL 181
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
MKE+ + G+ P+ +Y+ I YC+ + +M E C P+ +T ++ K
Sbjct: 182 MKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCK 241
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------AV-------------RFL 334
A + +A+K++ +M+ C Y++LI L K AV +
Sbjct: 242 AGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIV 301
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN++I R+ +G L+L + + CKPD T+ + C R++D + N M
Sbjct: 302 TYNSLIQGFSERANDG--LRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFNGM 359
Query: 395 REMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHATEQRTF 441
P +T L L +K + A+ +D + A + TF
Sbjct: 360 ------ACAPNVTTFNFLIRGLCAQKKVEEARNILDRMT--APDMTTF 399
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 87/204 (42%), Gaps = 22/204 (10%)
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
RK D A + KE+ F+P+ +Y I +C+ + +M+ G P+ T
Sbjct: 3 ARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNAST 62
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---FILSKAVRFL------- 334
++ L + Q+ ALK++ +M++ L ++ ++ L+ F+ +A+ F
Sbjct: 63 MNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRAIEFFKEMKASG 122
Query: 335 ------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
Y+ ++S+ S+ G + +C PD T+ + C + +
Sbjct: 123 VEPDLESYHILLSA---LSDSGRMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQ 179
Query: 389 LVLNLMREMLSKGIVPQESTHKML 412
+LM+E+L G P T+ ++
Sbjct: 180 ---SLMKEILKAGYEPNVFTYSII 200
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 42/227 (18%), Positives = 85/227 (37%), Gaps = 22/227 (9%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ ++VLI G+CK + A +M G P+ + + C
Sbjct: 24 NAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLF 83
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
+EMQ P+ + I++ A + A++ +++MK+ D Y L+ LS +
Sbjct: 84 REMQAGPFLPTSASHNILLRGFFMAGR---AIEFFKEMKASGVEPDLESYHILLSALSDS 140
Query: 331 VR----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
R + YN ++ C + A L ++I + +P+ T++
Sbjct: 141 GRMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSII 200
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ C ++++ V +M+ VP T L K +
Sbjct: 201 INCYCKLDKVEEAWEVF---MKMIESNCVPNAVTFNTLIAGFCKAGM 244
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
D + L+ L N V A ++F ++++ F+ LI G C +K + A+ +
Sbjct: 332 DVITYNCLISGLCSANRVEDAQRLFNGMACAPNVTT--FNFLIRGLCAQKKVEEARNILD 389
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M +PD ++ I +C+ +K+M + G P+ T + H ++ +K
Sbjct: 390 RMT----APDMTTFNTIILAFCKAGAMHDAREVMKDMLKHGFYPNTYTTYALAHGIQSSK 445
>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
Length = 479
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 26/242 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D +V++DTL K ++ A + F + D ++ ++ L+ G CK + A
Sbjct: 69 DVFTYNVVIDTLCKARRISRAIEFFETMPEPDVVT-----YNTLLGGLCKNGRVAQACSL 123
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
M G +P V+YT I+ +C+ F L+ M + C P+V + +++ L K
Sbjct: 124 FGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCK 183
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
+++ +A +++E+MK C D + YNT+I CV+ A
Sbjct: 184 NRKVDQAYQLFEEMKLAGCKPDR----------------VTYNTLIHGLCVKQRLHEAKD 227
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
L + E+ +PD T ++ C R+K+ + L + M +G P TH +L
Sbjct: 228 LLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFV---LFQGMAKQGCAPDLVTHTVLVS 284
Query: 415 EL 416
+L
Sbjct: 285 KL 286
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 24/237 (10%)
Query: 184 LMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+++ L K V AY++F +K C ++ LIHG C ++ A+ + M ++
Sbjct: 177 IINGLCKNRKVDQAYQLFEEMKLAGC-KPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVEN 235
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
GF PD +++T IE C ++ + M ++GC P ++T T+++ L +++ A
Sbjct: 236 GFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPA 295
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
L V + C Y+ + L + R A +L QK+
Sbjct: 296 LSVVRNYPA--CPEAVILYTPIFRELGR----------------RRGFDRAARLLQKMAR 337
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
P+ T+ K K+GM R ML +GI P + +L + K
Sbjct: 338 RGVPPNVVTYTAFFK---GLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCK 391
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 89/218 (40%), Gaps = 26/218 (11%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
L+ C+T K D A + EM + PD +Y I+ C+ + + + M E
Sbjct: 41 LVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPE-- 98
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF---- 333
P V+T ++ L K ++ +A ++ M+ Y++LI + K +F
Sbjct: 99 --PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAY 156
Query: 334 ---------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
Y ++I+ C + A +L ++++ CKPD T+ +
Sbjct: 157 GLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGL 216
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C K+R+ + +L+ M+ G P + T L E L
Sbjct: 217 CVKQRLHEAK---DLLTVMVENGFQPDKITFTALIEGL 251
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 27/223 (12%)
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
+ R+S+ + +F P+ +SY ++ CR K T+ EM + P V
Sbjct: 12 RARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVF 71
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF---------- 333
T +V+ L KA++I A++ +E M D +T Y++L+ L K R
Sbjct: 72 TYNVVIDTLCKARRISRAIEFFETMPEPDVVT----YNTLLGGLCKNGRVAQACSLFGSM 127
Query: 334 ---------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
+ Y T+I C + A L Q + C P ++ + C +++
Sbjct: 128 EGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKV 187
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKE 426
L EM G P T+ L L K+ L AK+
Sbjct: 188 DQA---YQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKD 227
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++VL+ G+CK + D A+K ++ M Q G P+ V+Y + H+CR+ + L M
Sbjct: 382 YNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMV 441
Query: 275 EKGCKPSVITCTIVMHALEKAKQ 297
+G +P V T + ++ L Q
Sbjct: 442 SRGRQPDVATWSTLVAGLFMVGQ 464
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 82/206 (39%), Gaps = 20/206 (9%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+ G+ T+ A++E L + D + +V M+ D
Sbjct: 233 VENGFQPDKITFTALIEGLCTT-------------DRIKEAFVLFQGMAKQGCAPDLVTH 279
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC---ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
+VL+ L + A V + C + L + IF L + R D A + +++M
Sbjct: 280 TVLVSKLCILRKLRPALSVVRNYPACPEAVILYTPIFREL----GRRRGFDRAARLLQKM 335
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
+ G P+ V+YT F + K+ + + M E+G +P ++ +++ KA ++
Sbjct: 336 ARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRL 395
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLI 324
A K+ M + Y++L+
Sbjct: 396 DMAEKMVRYMDQSGLPPNIVTYNTLV 421
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 133/346 (38%), Gaps = 74/346 (21%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G + TYN +++AL K+ + +L E MS D + +
Sbjct: 174 GLIPNVFTYNILLKALCKNDRVDAAHKLFVE-------------MSNKGCPPDAVTYTTM 220
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
+ +L K + A ++ +FK S +++ LI G CK + + A K + EM +G
Sbjct: 221 VSSLCKAGKIDDARELAGRFKP----SVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVD 276
Query: 245 PDGVSYTCFIEHYCREKD------------FRKVDYTL---------------------- 270
P+ VSY+C I C + R D +
Sbjct: 277 PNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDL 336
Query: 271 -KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
K M + GC+P+V+ ++H L + EAL+V ++M+ CL + + YS LI +K
Sbjct: 337 WKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAK 396
Query: 330 A-------------------VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ + Y M+ C S A L +K+ + C P+ T
Sbjct: 397 SGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMT 456
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+K C R++ M L+ M G +P +T+ L + L
Sbjct: 457 FNTFIKGLCGNGRVEWAM---KLLERMQGHGCLPNITTYNELLDAL 499
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/362 (20%), Positives = 148/362 (40%), Gaps = 51/362 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE--IDELS----------NGYV 164
F+ + HT TY M+E LG+ + ++ ++++ +D ++ NGY
Sbjct: 61 FSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYK 120
Query: 165 SLAAMSTVMRRL----------DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQ 213
+ + ++ R + L+D L+ N ++ KD + +
Sbjct: 121 RVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVF 180
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+++L+ CK + D A K EM G PD V+YT + C+ K+D +E+
Sbjct: 181 TYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAG---KID-DAREL 236
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA--- 330
+ KPSV ++ + K +I A+K+ +M + + YS +I L +
Sbjct: 237 AGR-FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNV 295
Query: 331 -VRFLIYNTMISSAC---------------VRSEEGNALKLRQKIEEDSCKPDCETHARS 374
+ F ++ M C +R + AL L + + +D C+P+ +
Sbjct: 296 ELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTL 355
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLT 433
+ C +++ + V + +M G +P +T+ +L + K L A E + +++
Sbjct: 356 IHGLCSNGSLEEALQVCD---QMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMIS 412
Query: 434 HA 435
H
Sbjct: 413 HG 414
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 22/238 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
+ A + L+ L S+ A +V ++ C+ + + +LI G+ K+ A +
Sbjct: 348 NVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLP-NVTTYSILIDGFAKSGDLVGASET 406
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
M HG P+ V+YTC ++ C+ F + + +++M +GC P+ +T + L
Sbjct: 407 WNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCG 466
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
++ A+K+ E+M+ CL + + Y+ L+ L + ++ EE A
Sbjct: 467 NGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKY--------------EE--AFG 510
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
L Q+IE + +P+ T+ L M + L L + L +G P T+ +
Sbjct: 511 LFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEA---LQLFGKALVRGTAPDSITYNTM 565
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 20/223 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LIHG C + A + +M + G P+ +Y+ I+ + + D T M
Sbjct: 352 YNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMI 411
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
GC+P+V+T T ++ L K +A + EKM + C +T +
Sbjct: 412 SHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNT----------------M 455
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+NT I C A+KL ++++ C P+ T+ L + ++ L
Sbjct: 456 TFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEA---FGLF 512
Query: 395 REMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHAT 436
+E+ ++ + P T+ + + +G A + + L T
Sbjct: 513 QEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGT 555
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/242 (19%), Positives = 105/242 (43%), Gaps = 23/242 (9%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQ 232
R + + ++D L K + A + + + C ++ F+ I G C + ++A
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTP-NTMTFNTFIKGLCGNGRVEWAM 474
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
K ++ M HG P+ +Y ++ R + + +E++ + +P+++T V++
Sbjct: 475 KLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGF 534
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA 352
+A + EAL+++ K + A + YNTMI + C + + A
Sbjct: 535 SRAGMMGEALQLFGKA----------------LVRGTAPDSITYNTMIHAYCKQGKVKIA 578
Query: 353 LKLRQKIEE-DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
+L +++ PD T+ + C+ +++ M L+ + +++GI P +T
Sbjct: 579 AQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLD---KAINQGICPNFATWNA 635
Query: 412 LA 413
L
Sbjct: 636 LV 637
>gi|255660954|gb|ACU25646.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 375
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 121/289 (41%), Gaps = 40/289 (13%)
Query: 132 TYNAMVEA---LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL 188
YNAM+ + K K +WE++ S G S+++ + +MR L
Sbjct: 27 VYNAMLNGYFRVAKIKDCFELWEMMG-----SEGNRSVSSFNIMMR------------GL 69
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
V ++ K+ + I + +L+HG+CK D + ++ Q G D
Sbjct: 70 FDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDA 129
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+Y+ I C+E + + Y L M + GCKP+V +++ L A + +A++V+ +
Sbjct: 130 FAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFRE 189
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
M + C + + YNT+I+ C + G A L +++ + P
Sbjct: 190 MGTMHC----------------SPTIITYNTLINGLCKKEMFGEAYNLVKELLDKGLDPG 233
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
T++ +K C +++ L L ++ SKG P H +L L
Sbjct: 234 VITYSMLMKGLCLDHKVER---ALQLWNQVTSKGFKPDVQMHNILIHGL 279
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 140/319 (43%), Gaps = 43/319 (13%)
Query: 116 CF-TWAKTQTGYMHTPETYNAMVEAL---GKSKKFGLMWELVKEI----DELS------- 160
CF W + + ++N M+ L GK + +WEL+KE D ++
Sbjct: 44 CFELWEMMGSEGNRSVSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHG 103
Query: 161 ---NGYV--SLAAMSTVMRR---LDTRAMSVLMDTLVKRNSVAHA-YKVFLKFKDCISLS 211
NGY+ SL + ++ LD A S +++ L K ++ A Y + K +
Sbjct: 104 FCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPN 163
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
+++ LI+G K + A + +EM SP ++Y I C+++ F + +K
Sbjct: 164 VHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKKEMFGEAYNLVK 223
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS---------- 321
E+ +KG P VIT +++M L ++ AL+++ ++ S D ++
Sbjct: 224 ELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVG 283
Query: 322 ------SLIFILSK---AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
SL F +++ A + +NT++ + NAL + +I + +PD ++
Sbjct: 284 KMQLALSLYFDMNRWKYAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 373 RSLKMCCHKKRMKDGMLVL 391
+LK C R+ D +L L
Sbjct: 344 ITLKGLCSCNRISDAILFL 362
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 92/230 (40%), Gaps = 24/230 (10%)
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
C++ D A++ KE+ + SPD V Y + Y R + + L EM SV
Sbjct: 1 CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDC-FELWEMMGSEGNRSV 59
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF------ILSKAVRFL-- 334
+ I+M L ++ E + ++E MK + D+ Y L+ + K++ L
Sbjct: 60 SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119
Query: 335 -----------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
Y+ MI+ C + AL + + + CKP+ + + +
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASK 179
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL-GNAKERIDELL 432
+D + V REM + P T+ L L KK + G A + ELL
Sbjct: 180 FEDAIRVF---REMGTMHCSPTIITYNTLINGLCKKEMFGEAYNLVKELL 226
>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
hederifolia]
Length = 431
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 129/317 (40%), Gaps = 50/317 (15%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRL----DTRAMSVLM 185
+T ++E L K K F L+W +EI L GY SL + +M R D R +
Sbjct: 108 DTCRKVLEHLMKLKYFKLVWGFYEEI--LECGYPASLYFFNILMHRFCKDGDIRVAQSVF 165
Query: 186 DTLVK---RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
D + K R SV ++ L++G+ + + + M G
Sbjct: 166 DAITKWGLRPSVVS------------------YNTLMNGYIRLGDLNEGFRLKSAMLASG 207
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
PD +Y+ I C+E + EM KG P+ +T T ++ K ++ A+
Sbjct: 208 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAM 267
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSA 343
++Y++M S L D Y++LI+ L K Y T+I
Sbjct: 268 EIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGC 327
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C + A + R+++ +++ + D + + C + R D ++REMLS G+
Sbjct: 328 CKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLK 384
Query: 404 PQESTHKMLAEELEKKS 420
P + T+ M+ E KK
Sbjct: 385 PDDRTYTMIINEFCKKG 401
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 14/161 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K +L+ E MS + D L+D K
Sbjct: 284 TYNTLIYGLXKKGDLKQAHDLIDE-------------MSMKGLKPDKFTYXTLIDGCCKE 330
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A++ + ++ I L + LI G C+ +S A+K ++EM G PD +Y
Sbjct: 331 GDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTY 390
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
T I +C++ D K LKEMQ G PSV+T ++M+
Sbjct: 391 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G CK D A + K M Q D V+YT I C+E + L+EM
Sbjct: 320 YXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREML 379
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G KP T T++++ K +++ K+ ++M+ D + Y+ L+
Sbjct: 380 SVGLKPDDRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 673
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 113/273 (41%), Gaps = 26/273 (9%)
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ A++ L+ L V A +FL+F I ++ ++ L+ G+ K A+ +
Sbjct: 268 SNAVTALISALGIAGRVPEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEHVL 327
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM + G +PD +Y+ ++ Y R + LKEM+ G KPS + ++
Sbjct: 328 DEMSECGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDR 387
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIY 336
+A V +M + D FY+ +I K + +
Sbjct: 388 GDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTW 447
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT+I + C A++L +++ E +C P T+ + + ++R V +M E
Sbjct: 448 NTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGEQERWVG---VETMMSE 504
Query: 397 MLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
M +G+VP T+ L + + G KE ID
Sbjct: 505 MKEQGLVPNIITYTTLVDVYGRS--GRYKEAID 535
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 111/255 (43%), Gaps = 23/255 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+V++DT K N + HA VF + + + I ++ LI CK + D A + KEM +
Sbjct: 413 NVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRE 472
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
P +Y I ++ + V+ + EM+E+G P++IT T ++ ++ + E
Sbjct: 473 SNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKE 532
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI------------FILSKAVRF-------LIYNTMIS 341
A+ E MK+D + Y +L+ + KA+R ++ N++I+
Sbjct: 533 AIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLIN 592
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
+ A + Q ++E+ +PD T+ +K ++ V + EM++ G
Sbjct: 593 AFGEDRRVVEAFSVLQFMKENDFRPDVITYTTLMKALIRVEQFDK---VPVIYEEMITSG 649
Query: 402 IVPQESTHKMLAEEL 416
P ML L
Sbjct: 650 CAPDRKARAMLRSAL 664
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 14/186 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN M+ LG+ +++ + ++ E+ E G V + + L+D +
Sbjct: 481 TYNIMINLLGEQERWVGVETMMSEMKE--QGLVP-----------NIITYTTLVDVYGRS 527
Query: 192 NSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
A K D + S ++ L++ + + +D+A +K M G V
Sbjct: 528 GRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVL 587
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I + ++ + L+ M+E +P VIT T +M AL + +Q + +YE+M +
Sbjct: 588 NSLINAFGEDRRVVEAFSVLQFMKENDFRPDVITYTTLMKALIRVEQFDKVPVIYEEMIT 647
Query: 311 DDCLTD 316
C D
Sbjct: 648 SGCAPD 653
>gi|15228903|ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial; AltName: Full=Protein
PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
gi|7670019|dbj|BAA94973.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332642359|gb|AEE75880.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 137/316 (43%), Gaps = 36/316 (11%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ GY+ T+NA + L K +LV E + +G+VS L
Sbjct: 348 ERGYIPDSSTFNAAMSCLLKGH------DLV-ETCRIFDGFVSRGVKPGFNGYL------ 394
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF--DVLIHGWCKTRKSDYAQKAMKEMFQ 240
VL+ L+ + + +LK L S ++ + +I CK R+ + A + EM
Sbjct: 395 VLVQALLNAQRFSEGDR-YLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQD 453
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G SP+ V++ F+ Y D +KV L+++ G KP VIT +++++ L +AK+I +
Sbjct: 454 RGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKD 513
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A +++M + + YN +I S C + ++KL K++
Sbjct: 514 AFDCFKEMLEWGIEPNE----------------ITYNILIRSCCSTGDTDRSVKLFAKMK 557
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKK 419
E+ PD + +++ C +++K L++ ML G+ P T+ L + L E
Sbjct: 558 ENGLSPDLYAYNATIQSFCKMRKVKKAE---ELLKTMLRIGLKPDNFTYSTLIKALSESG 614
Query: 420 SLGNAKERIDELLTHA 435
A+E + H
Sbjct: 615 RESEAREMFSSIERHG 630
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 101/217 (46%), Gaps = 25/217 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKF-------------GLMWELVKEIDELSNGYV---SLAA 168
G + + +YNA+++ L K+++ G+ LV + +GY +
Sbjct: 420 GLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVT-FNTFLSGYSVRGDVKK 478
Query: 169 MSTVMRRL-------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIH 220
+ V+ +L D S++++ L + + A+ F + + I + +++LI
Sbjct: 479 VHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIR 538
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
C T +D + K +M ++G SPD +Y I+ +C+ + +K + LK M G KP
Sbjct: 539 SCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKP 598
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDT 317
T + ++ AL ++ + EA +++ ++ C+ D+
Sbjct: 599 DNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDS 635
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 20/209 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ ++D L K + +A + +D IS + F+ + G+ ++++
Sbjct: 429 NAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLV 488
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
HGF PD ++++ I CR K+ + KEM E G +P+ IT I++ +
Sbjct: 489 HGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDR 548
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIF-------------ILSKAVRF------LIYNTMIS 341
++K++ KMK + D Y++ I +L +R Y+T+I
Sbjct: 549 SVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIK 608
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ E A ++ IE C PD T
Sbjct: 609 ALSESGRESEAREMFSSIERHGCVPDSYT 637
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 98/237 (41%), Gaps = 25/237 (10%)
Query: 197 AYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI 254
A++V + F KD +L +D +++ + + ++++ + G+ PD ++ +
Sbjct: 304 AFEVLVGFMEKDS-NLQRVGYDAVLYCLSNNSMAKETGQFLRKIGERGYIPDSSTFNAAM 362
Query: 255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
+ D + +G KP +++ AL A++ E + ++M D L
Sbjct: 363 SCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLL 422
Query: 315 TDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRSEEGNALKL 355
+ Y+++I L KA R + +NT +S VR + +
Sbjct: 423 SSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGV 482
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+K+ KPD T + + C K +KD + +EML GI P E T+ +L
Sbjct: 483 LEKLLVHGFKPDVITFSLIINCLCRAKEIKDA---FDCFKEMLEWGIEPNEITYNIL 536
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 14/177 (7%)
Query: 134 NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNS 193
+ + AL + L EL+KEI + +GY R+ M VL+ + +
Sbjct: 114 SVLGNALFRKGPLLLSMELLKEIRD--SGY-----------RISDELMCVLIGSWGRLGL 160
Query: 194 VAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
+ VF + + S+++++ +I K+ D A ++M G PD +Y
Sbjct: 161 AKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNI 220
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
I C++ + +K+M+++G +P+V T TI++ A ++ EALK E M+
Sbjct: 221 LIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMR 277
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 70/158 (44%), Gaps = 3/158 (1%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D SVL + L ++ + + ++ + +D +S ++ VLI W + + Y
Sbjct: 109 DQSLKSVLGNALFRKGPLLLSMELLKEIRDSGYRISDELMCVLIGSWGRLGLAKYCNDVF 168
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++ G P Y I+ + ++M+ GCKP T I++H + K
Sbjct: 169 AQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKK 228
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI--FILSKAV 331
+ EA+++ ++M+ + + Y+ LI F+++ V
Sbjct: 229 GVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRV 266
>gi|255660964|gb|ACU25651.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 376
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 121/289 (41%), Gaps = 40/289 (13%)
Query: 132 TYNAMVEA---LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL 188
YNAM+ + K K +WE++ S G S+++ + +MR L
Sbjct: 27 VYNAMLNGYFRVAKIKDCFELWEMMG-----SEGNRSVSSFNIMMR------------GL 69
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
V ++ K+ + I + +L+HG+CK D + ++ Q G D
Sbjct: 70 FDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDA 129
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+Y+ I C+E + + Y L M + GCKP++ +++ L A + +A++V+ +
Sbjct: 130 FAYSAMINGLCKEANLDRALYVLTGMIKSGCKPNIHVYNTLINGLVGASKFEDAIRVFRE 189
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
M + C + + YNT+IS C + G A L +++ + P
Sbjct: 190 MGTMHC----------------SPTIITYNTLISGLCKKEMFGEAYNLVKELLDKGLDPG 233
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
T++ +K C +++ L L ++ SKG P H +L L
Sbjct: 234 VITYSMLMKGLCLDHKVER---ALQLWNQVTSKGFKPDVQMHNILIHGL 279
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 136/319 (42%), Gaps = 43/319 (13%)
Query: 116 CF-TWAKTQTGYMHTPETYNAMVEAL---GKSKKFGLMWELVKEI----DELS------- 160
CF W + + ++N M+ L GK + +WEL+KE D ++
Sbjct: 44 CFELWEMMGSEGNRSVSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHG 103
Query: 161 ---NGYV--SLAAMSTVMRR---LDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLS 211
NGY+ SL + ++ LD A S +++ L K ++ A V K +
Sbjct: 104 FCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDRALYVLTGMIKSGCKPN 163
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
+++ LI+G K + A + +EM SP ++Y I C+++ F + +K
Sbjct: 164 IHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLISGLCKKEMFGEAYNLVK 223
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-- 329
E+ +KG P VIT +++M L ++ AL+++ ++ S D ++ LI L
Sbjct: 224 ELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVG 283
Query: 330 -----------------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
A + +NT++ + NAL + +I + +PD ++
Sbjct: 284 KMQLALSLYFDMNRRKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 373 RSLKMCCHKKRMKDGMLVL 391
+LK C R+ D +L L
Sbjct: 344 ITLKGLCSCNRISDAILFL 362
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 89/230 (38%), Gaps = 24/230 (10%)
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
C++ D A++ KE+ + SPD V Y + Y R + + L EM SV
Sbjct: 1 CESGDIDGAERVFKEIVESKVSPDAVVYNAMLNGYFRVAKIKDC-FELWEMMGSEGNRSV 59
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------------- 329
+ I+M L ++ E + ++E MK + D+ Y L+ K
Sbjct: 60 SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119
Query: 330 ------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+ Y+ MI+ C + AL + + + CKP+ + + +
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRALYVLTGMIKSGCKPNIHVYNTLINGLVGASK 179
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL-GNAKERIDELL 432
+D + V REM + P T+ L L KK + G A + ELL
Sbjct: 180 FEDAIRVF---REMGTMHCSPTIITYNTLISGLCKKEMFGEAYNLVKELL 226
>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
Length = 735
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
+ ++FD ++ +TR D A++ M+ M + G + + Y R R L
Sbjct: 125 APEVFDEMLVLLSRTRLHDPARRVMRLMIRRGMPRGTRQFAHLMLSYSRAGKLRSAMRVL 184
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
+ MQ+ GC P + C + ++ L A +I +AL+ E+M+ D Y+ LI L A
Sbjct: 185 QLMQKDGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVGVDPDVVTYNCLIKGLCGA 244
Query: 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
R + MISS + ++ C PD ++ + C +KR+ D V
Sbjct: 245 RRIVDALEMISS----------------MLQNGCLPDKISYFTVMSFLCKEKRVAD---V 285
Query: 391 LNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431
NL+ M GI P + T+ ML L K G+A E + L
Sbjct: 286 QNLLERMSDAGIFPDQVTYNMLIHGLAKH--GHADEALSFL 324
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 123/319 (38%), Gaps = 44/319 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSK-------------KFGLMWELVKEIDELSNGY 163
F WA Q Y H PE ++ M+ L +++ + G M ++ L Y
Sbjct: 113 FRWADRQWKYRHAPEVFDEMLVLLSRTRLHDPARRVMRLMIRRG-MPRGTRQFAHLMLSY 171
Query: 164 VSLAAMSTVMRRL----------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSS 212
+ + MR L D ++ ++ LV + A + + + +
Sbjct: 172 SRAGKLRSAMRVLQLMQKDGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVGVDPDV 231
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
++ LI G C R+ A + + M Q+G PD +SY + C+EK V L+
Sbjct: 232 VTYNCLIKGLCGARRIVDALEMISSMLQNGCLPDKISYFTVMSFLCKEKRVADVQNLLER 291
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF------- 325
M + G P +T +++H L K EAL + + D YS+ +
Sbjct: 292 MSDAGIFPDQVTYNMLIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCLNGR 351
Query: 326 ----------ILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
++SK R + Y+ ++ C E A K+ + + ++ CKP+ TH
Sbjct: 352 MAEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTA 411
Query: 374 SLKMCCHKKRMKDGMLVLN 392
L C + + +LN
Sbjct: 412 LLNGLCKVGKSSEAWELLN 430
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 115/274 (41%), Gaps = 33/274 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +++ L +++ E++ + L NG + D + +M L K
Sbjct: 233 TYNCLIKGLCGARRIVDALEMISSM--LQNGCLP-----------DKISYFTVMSFLCKE 279
Query: 192 NSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
VA + + D Q+ +++LIHG K +D A ++E F D V Y
Sbjct: 280 KRVADVQNLLERMSDAGIFPDQVTYNMLIHGLAKHGHADEALSFLRESEGKRFRVDEVGY 339
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ + +C + + EM KGC+P V+T + V+ + ++ +A K+ + M
Sbjct: 340 SATVHSFCLNGRMAEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYK 399
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ C +T +++L ++ C + A +L K EE+ P T
Sbjct: 400 NGCKPNTVTHTAL----------------LNGLCKVGKSSEAWELLNKSEEEWWTPSAIT 443
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
++ + + ++K+ +++ +ML KG P
Sbjct: 444 YSVVMHGFRREGKLKES---CDVVMQMLQKGFFP 474
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 107/239 (44%), Gaps = 23/239 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ ++ G+C+ + D A+K MK M+++G P+ V++T + C+ + L + +
Sbjct: 374 YSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSE 433
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------- 327
E+ PS IT ++VMH + ++ E+ V +M T + LI L
Sbjct: 434 EEWWTPSAITYSVVMHGFRREGKLKESCDVVMQMLQKGFFPTTVEINLLIHALCNERKPA 493
Query: 328 ----------SKA--VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
SK + + + T+I + + +AL L + + PD T+ +
Sbjct: 494 DAKDFMEQCQSKGCFINVVNFTTVIHGFSRQGDLESALSLLDDMYLTNRHPDVVTYTVVV 553
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLT 433
K +MK+ +L+ +ML++G+ P T++ + EK ++ + +D++L
Sbjct: 554 DALGRKGKMKEAT---SLVEKMLNRGLHPTPVTYRTVIHRYCEKGAVEDLLNLLDKMLA 609
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
+T + L++ L K + A+++ K ++ S I + V++HG+ + K + +
Sbjct: 405 NTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVV 464
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+M Q GF P V I C E+ +++ Q KGC +V+ T V+H +
Sbjct: 465 MQMLQKGFFPTTVEINLLIHALCNERKPADAKDFMEQCQSKGCFINVVNFTTVIHGFSRQ 524
Query: 296 KQIYEALKVYEKM 308
+ AL + + M
Sbjct: 525 GDLESALSLLDDM 537
>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 784
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 98/231 (42%), Gaps = 17/231 (7%)
Query: 158 ELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FD 216
+L + Y L++ S +D + L+ K A K++ + K+ + S I ++
Sbjct: 472 KLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYN 531
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
+I G C + K+D + + E+ + G PD +Y I YCRE K +M +K
Sbjct: 532 TMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKK 591
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336
KP + TC I++ L + +ALK++ S KA+ + Y
Sbjct: 592 SFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISK----------------GKAIDAVTY 635
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
NT+IS C A L ++EE PDC T+ L RMK+
Sbjct: 636 NTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEA 686
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 25/201 (12%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++V++ + K K D A +++M + GFSPD V++ I YC+ + + EM
Sbjct: 390 YNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMS 449
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---FILSKAV 331
KG K + +T ++H L +++ +A K+ D Y +LI F K+V
Sbjct: 450 RKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSV 509
Query: 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
A+KL +++E P T+ + CH + + L
Sbjct: 510 E-------------------AMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKL 550
Query: 392 NLMREMLSKGIVPQESTHKML 412
N E+L G+VP E+T+ +
Sbjct: 551 N---ELLESGLVPDETTYNTI 568
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 103/254 (40%), Gaps = 26/254 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI----FDVLIHGWCKTRKSDYAQKAMKE 237
+ L++ LV+ S Y F D I L ++ F++LI+G C K A + +
Sbjct: 178 NTLINALVRYPSKPSVYLSKAIFSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGK 237
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M PD VSY ++ C++ + L +M+ G P+ T I++ K
Sbjct: 238 MKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGW 297
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRF-------------LIYNT 338
+ EA +V + M ++ L D Y+ LI L K A R + YNT
Sbjct: 298 LKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNT 357
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+I+ S +L K+E KP+ T+ +K + +M + N +R+M
Sbjct: 358 LINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAG---NELRKME 414
Query: 399 SKGIVPQESTHKML 412
G P T L
Sbjct: 415 ESGFSPDCVTFNTL 428
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 16/135 (11%)
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNT 338
KP+++TC +++AL V K L+ F S + L V +N
Sbjct: 171 KPNLLTCNTLINAL-----------VRYPSKPSVYLSKAIF--SDVIKLGVKVNTNTFNI 217
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+I C+ ++ A+ L K+++ SC PD ++ L + C K ++ + +L+ +M
Sbjct: 218 LIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEAR---DLLLDMK 274
Query: 399 SKGIVPQESTHKMLA 413
+ G++P +T +L
Sbjct: 275 NNGLLPNRNTFNILV 289
>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
Length = 596
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 133/316 (42%), Gaps = 48/316 (15%)
Query: 132 TYNAMVEALGKSKKF----GLMWELVKE-IDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
T+NA+++A K KF L +++K ID Y SL + RLD
Sbjct: 294 TFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDK-------- 345
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
A F+ KDC ++ LI G+CK+++ + + +EM G D
Sbjct: 346 --------AKQMFEFMVSKDCFP-DVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 396
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+YT I+ + D K+M G P ++T +I++ L ++ +AL+V++
Sbjct: 397 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD 456
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRS 347
M+ + D Y+++I + KA + + YNTMIS C +
Sbjct: 457 YMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKR 516
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG--MLVLNLMREMLSKGIVPQ 405
A L +K++ED P+ T+ + + ++DG L+REM S V
Sbjct: 517 LLQEAYALLKKMKEDGPLPNSGTYNTLI-----RAHLRDGDKAASAELIREMRSCRFVGD 571
Query: 406 ESTHKMLAEELEKKSL 421
ST ++A L L
Sbjct: 572 ASTIGLVANMLHDGRL 587
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 98/236 (41%), Gaps = 20/236 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
V+++ L KR A + K + I IF+ +I CK R D A KEM
Sbjct: 191 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 250
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ V+Y+ I C + L +M EK P+++T ++ A K + E
Sbjct: 251 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 310
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A K+Y+ M D YN++++ C+ A ++ + +
Sbjct: 311 AEKLYDDMIKRSIDPD----------------IFTYNSLVNGFCMHDRLDKAKQMFEFMV 354
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C PD T+ +K C KR++DG L REM +G+V T+ L + L
Sbjct: 355 SKDCFPDVVTYNTLIKGFCKSKRVEDGT---ELFREMSHRGLVGDTVTYTTLIQGL 407
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 120/286 (41%), Gaps = 34/286 (11%)
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAM 235
++V+ N + A KF ISL ++ +++LI+ +C+ + A +
Sbjct: 46 SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALL 105
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+M + G+ P V+ + + YC K + +M E G +P IT T ++H L
Sbjct: 106 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 165
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRFL-------------IY 336
+ EA+ + ++M C + Y ++ L K A+ L I+
Sbjct: 166 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIF 225
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT+I S C +AL L +++E +P+ T++ + C R D L+ +
Sbjct: 226 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDAS---QLLSD 282
Query: 397 MLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATEQRTF 441
M+ K I P T L + K+ A++ D+++ + + F
Sbjct: 283 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIF 328
>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Glycine max]
Length = 827
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 146/341 (42%), Gaps = 44/341 (12%)
Query: 116 CFTWAKTQTGYMHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM 173
C W K G TP +YN M+ LG KK G M + E+ NG + +
Sbjct: 451 CNLWDK-MIGKGITPSLVSYNHMI--LGHCKK-GCM----DDAHEVMNGIIESGLKPNAI 502
Query: 174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQ 232
++LM+ K+ HA+ +F + I + F+ +I+G CK + A+
Sbjct: 503 ------TYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEAR 556
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ + F P ++Y C I+ Y +E + +EM P+VIT T +++
Sbjct: 557 DKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGF 616
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRF------------- 333
K+ ++ ALK+++ MK D + Y++LI K A +F
Sbjct: 617 CKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNT 676
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML--VL 391
++YN MIS+ + AL L +++ + D + + + +K+G L L
Sbjct: 677 IVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLI-----DGLLKEGKLSFAL 731
Query: 392 NLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
+L EML +GIVP + +L L L NA + + E+
Sbjct: 732 DLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEM 772
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 133/315 (42%), Gaps = 40/315 (12%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
G + T T+N+++ L K + V E + N ++ + + T M
Sbjct: 528 VAAGIVPTDYTFNSIINGLCKVGR-------VSEARDKLNTFIKQSFIPTSM------TY 574
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ ++D VK ++ A V+ + + IS + + LI+G+CK+ K D A K +M +
Sbjct: 575 NCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKR 634
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G D Y I +C+ +D ++ E G P+ I I++ A +
Sbjct: 635 KGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEA 694
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMIS 341
AL ++++M ++ D Y+SLI L K + +YN +I+
Sbjct: 695 ALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLIN 754
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML--VLNLMREMLS 399
C + NA K+ ++++ ++ P + + K+G L L EML
Sbjct: 755 GLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIA-----GHFKEGNLQEAFRLHDEMLD 809
Query: 400 KGIVPQESTHKMLAE 414
KG+VP ++T+ +L
Sbjct: 810 KGLVPDDTTYDILVN 824
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 27/204 (13%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLK------FKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
++VL+ +++RN V A+++F + + DC +L VL+ K K A++
Sbjct: 190 VNVLLTAMIRRNMVEDAHRLFDEMAERRIYGDCYTLQ-----VLMRACLKGGKFVEAERY 244
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ G D SY+ I+ CR D ++ +E G PS T V+ A +
Sbjct: 245 FGQAAGRGLKLDAASYSIVIQAVCRGSDLDLASKLVEGDEELGWVPSEGTYAAVIGACVR 304
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
EAL++ ++M + + +SL I CVR + +AL+
Sbjct: 305 LGNFGEALRLKDEMVDSRVPVNVAVATSL----------------IKGYCVRGDVNSALR 348
Query: 355 LRQKIEEDSCKPDCETHARSLKMC 378
L ++ E P+ + ++ C
Sbjct: 349 LFDEVVEVGVTPNVAIFSVLIEWC 372
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 67/152 (44%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++ L+ K+N + +AY + + S +++++ C+ K + A +M
Sbjct: 400 LNFLLKGFRKQNLLENAYLLLDGAVENGIASVVTYNIVLLWLCELGKVNEACNLWDKMIG 459
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G +P VSY I +C++ + + E G KP+ IT TI+M K
Sbjct: 460 KGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEH 519
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
A ++++M + + ++S+I L K R
Sbjct: 520 AFNMFDQMVAAGIVPTDYTFNSIINGLCKVGR 551
>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like isoform 1 [Vitis vinifera]
Length = 610
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 115/251 (45%), Gaps = 25/251 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK--DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
++L++ L ++ + A + K C + +S ++ L+HG+CK +K D A + + M
Sbjct: 360 NILINFLCRQGLLGRAIDILEKMPMHGC-TPNSLSYNPLLHGFCKEKKMDRAIEYLDIMV 418
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G PD V+Y + C++ L ++ KGC P +IT V+ L K +
Sbjct: 419 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTE 478
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRF-------------LIYNTMI 340
A+K+ ++M+ D YSSL+ LS+ A++F + YN+++
Sbjct: 479 RAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIM 538
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
C + A+ + CKP T+ ++ ++ K+ L+L+ E+ S+
Sbjct: 539 LGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKE---ALDLLNELCSR 595
Query: 401 GIVPQESTHKM 411
G+V + S ++
Sbjct: 596 GLVKKSSAEQV 606
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 110/259 (42%), Gaps = 31/259 (11%)
Query: 202 LKFKDCISLSSQIFDV-----LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256
KF + + I D+ LI G+C+ K+ A M+ + Q G PD ++Y I
Sbjct: 134 FKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISG 193
Query: 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316
YC+ + +D L+ + P V+T ++ L + ++ +A++V ++ +C D
Sbjct: 194 YCKSGE---IDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPD 250
Query: 317 TSFYSSLIFI------LSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQ 357
Y+ LI + +A++ L YN +I+ C A+K
Sbjct: 251 VITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLN 310
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
+ C+P+ TH L+ C R D L+ +ML KG P T +L L
Sbjct: 311 NMPSYGCQPNVITHNIILRSMCSTGRWMDAE---KLLSDMLRKGCSPSVVTFNILINFLC 367
Query: 418 KKS-LGNAKERIDELLTHA 435
++ LG A + ++++ H
Sbjct: 368 RQGLLGRAIDILEKMPMHG 386
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 123/279 (44%), Gaps = 29/279 (10%)
Query: 168 AMSTVMRRL------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIH 220
AM + R+L D ++L++ K + V A K+ + ++ S + ++VLI+
Sbjct: 235 AMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLIN 294
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G CK + D A K + M +G P+ +++ + C + + L +M KGC P
Sbjct: 295 GICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSP 354
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------LSKAVRFL 334
SV+T I+++ L + + A+ + EKM C ++ Y+ L+ + +A+ +L
Sbjct: 355 SVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYL 414
Query: 335 -------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
YNT++++ C + A+++ ++ C P T+ +
Sbjct: 415 DIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKV 474
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ + + L+ EM KG+ P T+ L L ++
Sbjct: 475 GKTER---AIKLLDEMRRKGLKPDIITYSSLVSGLSREG 510
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 113/259 (43%), Gaps = 24/259 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
D +VL+ K + +A +V + ++ ++ ++ C + K A + +
Sbjct: 183 DVITYNVLISGYCKSGEIDNALQVLDRMN--VAPDVVTYNTILRTLCDSGKLKQAMEVLD 240
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
Q PD ++YT IE C+E + L EM+ KG KP V+T ++++ + K
Sbjct: 241 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEG 300
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIF-------------ILSKAVR------FLIYN 337
++ EA+K M S C + ++ ++ +LS +R + +N
Sbjct: 301 RLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFN 360
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+I+ C + G A+ + +K+ C P+ ++ L C +K+M + L++ M
Sbjct: 361 ILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDI---M 417
Query: 398 LSKGIVPQESTHKMLAEEL 416
+S+G P T+ L L
Sbjct: 418 VSRGCYPDIVTYNTLLTAL 436
>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
Length = 385
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 20/207 (9%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ ++ LI G CK ++ A ++EM G PD +YT I +C+ K
Sbjct: 53 TAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVF 112
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM-KSDDCLTDTSFYSSLIFILSK 329
+++ +G +P V+T + ++ L K ++ EA+ ++ +M KS C+ +T
Sbjct: 113 EQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNT------------ 160
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ YN++IS C + A+ L +++ E PD T+ + C R+ D
Sbjct: 161 ----VTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYD 216
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEEL 416
+LN +M KG+ P T L + L
Sbjct: 217 LLN---QMTRKGLTPNVVTFTSLMDGL 240
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 87/196 (44%), Gaps = 22/196 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ L++G+CK + D A + +M + G +P+ V++T ++ CRE + L EM+
Sbjct: 198 YTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMR 257
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALK-VYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
K C P+V T ++ + Q+ EA K + E+M DC +
Sbjct: 258 RKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEEM---DCPPNV---------------- 298
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ +N MI C + A++L ++ C PD + + + C +K++ + V
Sbjct: 299 VSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRK 358
Query: 394 MREMLSKGIVPQESTH 409
M E G +P T+
Sbjct: 359 MLE--EPGCLPNSITY 372
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/395 (22%), Positives = 168/395 (42%), Gaps = 52/395 (13%)
Query: 73 NEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTG---YMHT 129
N Q+ + S + + TD+ + S IL+ + P +++ F W++ + G
Sbjct: 38 NWQALMESSDIPKKLNTDIIR-SVILQNQVGDPKRLLNF-----FYWSQHKMGTSTAQQD 91
Query: 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR-------RLDTRAMS 182
+ +A+ L S +G +L+K I + N LA + ++++ ++
Sbjct: 92 LDVLSALAVNLCNSNWYGPASDLIKCI--IRNSDSPLAVLGSIVKCYRSCNGSPNSVIFD 149
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKD------CISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
+LMD+ K + A VFL K+ +S +S + D+L K K + K
Sbjct: 150 MLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLL-----KGNKVELFWKVFD 204
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M H PD +YT I +C+ + + L EM EKGC P+++T +++ L +A+
Sbjct: 205 GMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRAR 264
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLI--FILSKAVR-----------------FLIYN 337
+ EA+++ M + D Y LI F + K R + YN
Sbjct: 265 LLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYN 324
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+I + + A +++ ++ + + L C +M+ L +M+EM
Sbjct: 325 ALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEK---ALEIMQEM 381
Query: 398 LSKGIVPQESTHKMLAE-ELEKKSLGNAKERIDEL 431
+ KG+ P T+ +L E +++ A E +DE+
Sbjct: 382 MEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEM 416
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 136/334 (40%), Gaps = 50/334 (14%)
Query: 125 GYMHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL--DTRA 180
G TP TY AMV+ KSK ++L++E+ ++R + D
Sbjct: 698 GRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEM---------------LLRGVPPDAFI 742
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+V+++ K A +F + + S+ F+ LI G+CK+ K A ++EM +
Sbjct: 743 YNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIE 802
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
F P+ V+YT I+H C+ + EMQE+ P+ T T ++H + E
Sbjct: 803 KQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSE 862
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI-----------------FILSKAVRFLI--YNTMIS 341
++E+M + D Y +I IL K + + Y+ +I
Sbjct: 863 VSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQ 922
Query: 342 SACVRSEEGNALKLRQKIEEDSCK---PDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+ C + E LKL +I E + P C AR ++ + + ++R M+
Sbjct: 923 ALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAE------VLRSMV 976
Query: 399 SKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
G V ++ L + ++ G E D LL
Sbjct: 977 KFGWVSNTTS---LGDLVDGNQNGANSEDSDNLL 1007
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 106/256 (41%), Gaps = 28/256 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L++ K +V A+ VF + Q + VLIHG + K A E+ +
Sbjct: 569 TALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQE 628
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ +Y I C++ + K L+EM KG P ++T I++ L KA +I
Sbjct: 629 KGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIER 688
Query: 301 ALKVYEKMK----SDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
A +++ ++ + +C+T Y M+ C A +L
Sbjct: 689 AKNLFDDIEGRGLTPNCVT--------------------YAAMVDGYCKSKNPTAAFQLL 728
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+++ PD + L CC +++ + L+L +EML KG S + ++
Sbjct: 729 EEMLLRGVPPDAFIYNVILNFCCKEEKFEK---ALDLFQEMLEKGFASTVSFNTLIEGYC 785
Query: 417 EKKSLGNAKERIDELL 432
+ L A ++E++
Sbjct: 786 KSGKLQEANHLLEEMI 801
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/325 (20%), Positives = 134/325 (41%), Gaps = 45/325 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI------------DELSNGY----------VSLAAM 169
TYN ++ L +++ EL + + D L NG+ + L M
Sbjct: 252 TYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEM 311
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKS 228
V + + + L+D +++ + A+++ + C I + I++ L++G CK K
Sbjct: 312 IDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKM 371
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+ A + M+EM + G PD +Y+ IE +CR ++ + L EM+++ P+V+T +++
Sbjct: 372 EKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVI 431
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR---------------- 332
++ L + + + +M + + Y++L+ +K R
Sbjct: 432 INGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGI 491
Query: 333 ---FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
YN++I C A ++ E +P+ T+ + M+
Sbjct: 492 LPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADR 551
Query: 390 VLNLMREMLSKGIVPQESTHKMLAE 414
N EMLS G++P + L E
Sbjct: 552 YFN---EMLSCGVLPNVGIYTALIE 573
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 103/250 (41%), Gaps = 29/250 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G+CK ++ + A+ + EM + P+ +Y FI+ Y + + D EM
Sbjct: 498 YNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEML 557
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
G P+V T ++ K + EA V+ + S L D YS LI LS+ +
Sbjct: 558 SCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMH 617
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEE---DSCKPDCETHA 372
YN++IS +C ++GN K Q +EE PD T+
Sbjct: 618 EAFGIFSELQEKGLLPNAFTYNSLISGSC---KQGNVDKASQLLEEMCIKGINPDIVTYN 674
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
+ C ++ NL ++ +G+ P T+ + + + K+ A + ++E+
Sbjct: 675 ILIDGLCKAGEIERAK---NLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEM 731
Query: 432 LTHATEQRTF 441
L F
Sbjct: 732 LLRGVPPDAF 741
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 22/221 (9%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ + I G+ K + + A + EM G P+ YT IE +C+E + +
Sbjct: 529 NAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVF 588
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------ 324
+ + + V T ++++H L + +++EA ++ +++ L + Y+SLI
Sbjct: 589 RFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQ 648
Query: 325 FILSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+ KA + L YN +I C E A L IE P+C T+
Sbjct: 649 GNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTY 708
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
A + C + K+ L+ EML +G+ P + ++
Sbjct: 709 AAMVDGYC---KSKNPTAAFQLLEEMLLRGVPPDAFIYNVI 746
>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 713
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 142/323 (43%), Gaps = 39/323 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYNA++ K FG M E + GY + VM + T S +D K
Sbjct: 260 TYNALINCFCK---FGRM--------ETAYGYFAAMKREGVMANVVT--FSTFVDAFCKE 306
Query: 192 NSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A K+F + + ++L+ + LI G CK + D A + EM + G + V+Y
Sbjct: 307 GLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTY 366
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T ++ C+E+ + + L+ M++ G + + + T ++H K +AL + +MK+
Sbjct: 367 TVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKN 426
Query: 311 DDCLTDTSFYSSLI-------------FILSKA------VRFLIYNTMISSACVRSEE-G 350
D S Y +LI +L+K ++IY TM+ AC +S +
Sbjct: 427 KGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMM-DACFKSGKVP 485
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A+ + QKI + +P+ T+ + C + + + N MR++ G+ P +
Sbjct: 486 EAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDL---GLDPNVQAYT 542
Query: 411 MLAEELEKKS-LGNAKERIDELL 432
L + L K L A + +E++
Sbjct: 543 ALVDGLCKNGCLNEAVQLFNEMV 565
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/210 (19%), Positives = 90/210 (42%), Gaps = 22/210 (10%)
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D + + ++ +F+ +P+ ++ I+ C+E + + M+E GC P V+T +
Sbjct: 170 DRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSL 229
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--------------- 333
+ K ++ E ++ E+M+ C D Y++LI K R
Sbjct: 230 IDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGV 289
Query: 334 ----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ ++T + + C A+KL ++ + T+ + C R+ D ++
Sbjct: 290 MANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIV 349
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKK 419
+L+ EM+ +G+ T+ +L + L K+
Sbjct: 350 LLD---EMVRQGVPLNVVTYTVLVDGLCKE 376
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 1/142 (0%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+D L K S+ A F K +D + + Q + L+ G CK + A + EM G
Sbjct: 509 LIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKG 568
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
S D V YT ++ Y ++ + +M + G + + T + + EA
Sbjct: 569 MSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAR 628
Query: 303 KVYEKMKSDDCLTDTSFYSSLI 324
+V+ +M D + Y+ LI
Sbjct: 629 EVFSEMIGHGIAPDRAVYNCLI 650
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 90/218 (41%), Gaps = 27/218 (12%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I+ ++ K+ K A ++++ GF P+ ++Y I+ C+ + +M
Sbjct: 470 IYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKM 529
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
++ G P+V T ++ L K + EA++++ +M D Y++L+ K
Sbjct: 530 RDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLK---- 585
Query: 334 LIYNTMISSACVRSEEGN---ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
+GN A L+ K+ + + D + + C+ M + V
Sbjct: 586 ---------------QGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREV 630
Query: 391 LNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
+ EM+ GI P + + L + +K LGN +E I
Sbjct: 631 FS---EMIGHGIAPDRAVYNCLISKYQK--LGNLEEAI 663
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 1/134 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ +A + L+D L K + A ++F + +SL ++ L+ G+ K A
Sbjct: 537 NVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALK 596
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+M G D YTCFI +C + EM G P ++ +K
Sbjct: 597 AKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKL 656
Query: 296 KQIYEALKVYEKMK 309
+ EA+ + ++M+
Sbjct: 657 GNLEEAISLQDEME 670
>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
Length = 1060
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 125/285 (43%), Gaps = 36/285 (12%)
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ----IFDVLIHGWCKTRKSDY--AQ 232
+A ++++D LVK+ +KV+ D ++ + + LI G C R+ D+ A
Sbjct: 159 QACNMVLDGLVKKGRFDTMWKVY---GDMVARGASPNVVTYGTLIDGCC--RQGDFLKAF 213
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ EM + P V YT I C E + + + M+ G P++ T +M
Sbjct: 214 RLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGY 273
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRFLI----------- 335
K + +AL++Y +M D L + + LI L K A +FLI
Sbjct: 274 CKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNI 333
Query: 336 --YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
YN +I C AL L +IE+ PD T++ +K C RM++ L
Sbjct: 334 FVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEAD---GL 390
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQ 438
++EM KG +P T+ L + K+ GN ++ I E+ + TE+
Sbjct: 391 LQEMKKKGFLPNAVTYNTLIDGYCKE--GNMEKAI-EVCSQMTEK 432
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 29/227 (12%)
Query: 117 FTWAKTQTGY---MHTPETYNAMVEALGKS-----KKFGLMWELVKEIDELSNGYVSLAA 168
+T+ GY H + E LG FG++ + + + DE+ + L
Sbjct: 264 YTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLID 323
Query: 169 MSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDV 217
M++ + + L+D K +++ A +SL S+I + +
Sbjct: 324 MASFGVVPNIFVYNCLIDGYCKAGNLSEA----------LSLHSEIEKHEILPDVFTYSI 373
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LI G C + + A ++EM + GF P+ V+Y I+ YC+E + K +M EKG
Sbjct: 374 LIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKG 433
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+P++IT + ++ KA ++ A+ +Y +M L D Y++LI
Sbjct: 434 IEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALI 480
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 6/206 (2%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F LI G+CK K + A EM G PD V+YT I+ + ++ + ++ KEMQ
Sbjct: 441 FSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQ 500
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
E G P+V T + ++ L K +I +A+K++ D T S + L L +
Sbjct: 501 EAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTD--TTGSKTNELDRSLCSP-NHV 557
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+Y +I C A K + +PD T ++ ++D V+ L
Sbjct: 558 MYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRD---VMMLQ 614
Query: 395 REMLSKGIVPQESTHKMLAEELEKKS 420
++L GI+P S +++LA+ E+
Sbjct: 615 ADILKMGIIPNSSVYRVLAKGYEESG 640
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 21/143 (14%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+S L+D L K ++ A K+FL KT +D E+ +
Sbjct: 511 LSCLIDGLCKDGRISDAIKLFLA--------------------KT-GTDTTGSKTNELDR 549
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
SP+ V YT I+ C + K +M+ G +P V TC +++ +A + +
Sbjct: 550 SLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRD 609
Query: 301 ALKVYEKMKSDDCLTDTSFYSSL 323
+ + + + ++S Y L
Sbjct: 610 VMMLQADILKMGIIPNSSVYRVL 632
>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 136/321 (42%), Gaps = 39/321 (12%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA + Y H TY A++ L +++G MW++++E+ V+ +S ++R L
Sbjct: 106 FRWAARKRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRML 165
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
M ++ A +F +K + C ++ ++ +I + + +
Sbjct: 166 GNAKM------------ISKAVAIFYQIKARKC-QPTAHAYNSMIIMLMHEGEYEKVHEL 212
Query: 235 MKEMFQHGFS-PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
EM G PD V+Y+ I +C+ + L EM++ G +P+ T++M L
Sbjct: 213 YNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLF 272
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------L 334
K ++ AL ++E+M+ C D Y+ LI L KA R +
Sbjct: 273 KLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTV 332
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH-KKRMKDGMLVLNL 393
+ N MI+ +A+KL +++E C P T+ +K K R+ + + +
Sbjct: 333 LMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSE---ISSW 389
Query: 394 MREMLSKGIVPQESTHKMLAE 414
M GI P T+ +L +
Sbjct: 390 FERMKGSGISPSPFTYSILID 410
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 14/211 (6%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
+G +P TY+ +++ K+ + L++E+DE G+ A A
Sbjct: 396 SGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDE--KGFPPCPA-----------AYCS 442
Query: 184 LMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+D L K A ++F + K +C S S++++ V+I K + D A EM + G
Sbjct: 443 LIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLG 502
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
+P+ +Y + R + T++ MQ+ GC P + + I+++AL K A+
Sbjct: 503 CTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAM 562
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+ MK D Y++++ LS A F
Sbjct: 563 GMLCNMKQSAIKPDAVSYNTVLGALSHAGMF 593
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/311 (20%), Positives = 136/311 (43%), Gaps = 37/311 (11%)
Query: 130 PETY--NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT 187
P+T N M+ LGK+ + +L +E++ L S+ +T+++ L
Sbjct: 329 PDTVLMNNMINFLGKAGRLDDAIKLFEEMETL-RCIPSVVTYNTIIKAL----------- 376
Query: 188 LVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
++ V+ F + K IS S + +LI G+CKT +++ A ++EM + GF P
Sbjct: 377 FESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPC 436
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
+Y I+ + K + + +E++E S +++ L KA ++ +A+ +++
Sbjct: 437 PAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFD 496
Query: 307 KMKSDDCLTDTSFYSSLIFILSKA---------VRFL----------IYNTMISSACVRS 347
+M C + Y++L+ L++A +R + YN ++++
Sbjct: 497 EMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTG 556
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
A+ + +++ + KPD ++ L H ++ LM+EM + G
Sbjct: 557 GPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAA---KLMKEMNAIGFDYDLI 613
Query: 408 THKMLAEELEK 418
T+ + E + K
Sbjct: 614 TYSSILEAIGK 624
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 29/201 (14%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM-------RR 175
+ G+ P Y ++++ALGK+K++ L EL +E+ E N S A + VM R
Sbjct: 430 EKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKE--NCGSSSARVYAVMIKHLGKAGR 487
Query: 176 LD-----------------TRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQIFD 216
LD A + LM L + + A + +D CI ++
Sbjct: 488 LDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIP-DINSYN 546
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
++++ KT D A + M Q PD VSY + F + +KEM
Sbjct: 547 IILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAI 606
Query: 277 GCKPSVITCTIVMHALEKAKQ 297
G +IT + ++ A+ K Q
Sbjct: 607 GFDYDLITYSSILEAIGKVDQ 627
>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 418
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 130/314 (41%), Gaps = 44/314 (14%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W +E L GY + ++LM + VK
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWGFYEE--SLECGYPA-----------SLYFFNILMHSFVK 148
Query: 191 RNSVAHAYKVFLKFKDCI---SLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+ A VF D I SL + F+ L++G+ K D + M G P
Sbjct: 149 EGEIRLAQSVF----DAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQP 204
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D +Y+ I C+E + EM + G P+ +T T ++ K ++ A+++Y
Sbjct: 205 DVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIY 264
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVR 346
++M S D Y++LI+ L K + Y T+I C
Sbjct: 265 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKE 324
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
+ A + R+++ +++ + D + + C + R D ++REMLS G+ P+
Sbjct: 325 GDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLKPEI 381
Query: 407 STHKMLAEELEKKS 420
T+ M+ E KK
Sbjct: 382 GTYTMIINEFCKKG 395
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 90/388 (23%), Positives = 155/388 (39%), Gaps = 60/388 (15%)
Query: 51 TQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVE 110
TQ D + +++ES L + I + L+++H+ R + + KV+E
Sbjct: 61 TQRSDIYVFSGLITAYLESGFLRDA--IECYRLTKEHK---------FRVPFDTCRKVLE 109
Query: 111 ---ALKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM---------WEL-- 152
LK F W + GY + +N ++ + K + L W L
Sbjct: 110 HLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRP 169
Query: 153 -VKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF 201
V + L NGY+ L AM + D SVL++ L K + + A ++F
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELF 229
Query: 202 LKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
+ D + + + F LI G CK + D A + K+M SPD ++Y I C++
Sbjct: 230 DEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 289
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
D ++ + EM KG KP IT T ++ K + A + ++M ++ D Y
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
++L IS C +A K+ +++ KP+ T+ + C
Sbjct: 350 TAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQEST 408
K + G L++EM G +P T
Sbjct: 394 KGDVWTGS---KLLKEMQRDGYMPSVVT 418
>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 126/289 (43%), Gaps = 33/289 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY A+++ K K +KE L N + + ++ + L D L K
Sbjct: 330 TYTALIDGYCKEGK-------MKEAFSLHNQMLQMGLTPNIV------TYTALADGLCKC 376
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A ++ + + + L+ ++ L++G CK D A K MK+M GF PD V+Y
Sbjct: 377 GEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTY 436
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T ++ YC+ ++ + L++M ++ +P+V+T ++M+ + + + K+ + M
Sbjct: 437 TTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLE 496
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ + + YN++I C+R+ ++ + + PD T
Sbjct: 497 KGIMPNAT----------------TYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNT 540
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
+ +K C + MK+ L R+M+ KG S++ L + K+
Sbjct: 541 YNILIKGHCKARNMKEAWF---LHRDMVGKGFNLTVSSYNALIKGFYKR 586
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 132/311 (42%), Gaps = 36/311 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G P TYN ++ L K+ K +++E+ +S G D + L
Sbjct: 218 GLKPNPYTYNGVILLLCKTGKVAEAERVLREM--ISEGIAP-----------DGVIYTTL 264
Query: 185 MDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D K +V+ AY++F + K IS + +I G C+T + A K EM
Sbjct: 265 IDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRL 324
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD V+YT I+ YC+E ++ +M + G P+++T T + L K ++ A +
Sbjct: 325 EPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANE 384
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSAC 344
+ +M + Y+SL+ L KA + Y T++ + C
Sbjct: 385 LLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYC 444
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
E A +L +++ + +P T + C ++DG L++ ML KGI+P
Sbjct: 445 KSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGE---KLLKWMLEKGIMP 501
Query: 405 QESTHKMLAEE 415
+T+ L ++
Sbjct: 502 NATTYNSLIKQ 512
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 88/219 (40%), Gaps = 26/219 (11%)
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
K ++ K ++EM G P+ +Y I C+ + + L+EM +G P + T
Sbjct: 203 KGEWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYT 262
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR 346
++ K + A +++++M+ D F+ Y +I C
Sbjct: 263 TLIDGFCKLGNVSSAYRLFDEMQKRKISPD----------------FITYTAVICGLC-- 304
Query: 347 SEEGNALKLRQKIEEDSCK---PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
+ G ++ + E CK PD T+ + C + +MK+ +L +ML G+
Sbjct: 305 -QTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEA---FSLHNQMLQMGLT 360
Query: 404 PQESTHKMLAEELEK-KSLGNAKERIDELLTHATEQRTF 441
P T+ LA+ L K + A E + E+ E +
Sbjct: 361 PNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIY 399
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 49/226 (21%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN++V L K+ +L+K+ M D + LMD K
Sbjct: 400 TYNSLVNGLCKAGNIDQAVKLMKD-------------MEVAGFHPDAVTYTTLMDAYCKS 446
Query: 192 NSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF------- 243
+ A+++ + D + + F+VL++G+C + + +K +K M + G
Sbjct: 447 REMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTY 506
Query: 244 ----------------------------SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
PDG +Y I+ +C+ ++ ++ + ++M
Sbjct: 507 NSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVG 566
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
KG +V + ++ K K+ EA +++E+M+ + + D Y+
Sbjct: 567 KGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYN 612
>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 719
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 19/195 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++++I +CKT D A KEM G P+ V++ I+ YC+ + K L +
Sbjct: 465 YNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLL 524
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
E G KP + T + ++ L +AKQI +AL + +M +++ LS +
Sbjct: 525 EHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEM--------------VMWGLSPNA--V 568
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN +I S C+ + ++KL +K++ D PD + ++ C +++D L
Sbjct: 569 TYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAK---KLF 625
Query: 395 REMLSKGIVPQESTH 409
MLS G++P T+
Sbjct: 626 SSMLSLGLIPDNYTY 640
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 90/214 (42%), Gaps = 19/214 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ LI G+CK + ++ + + +HGF PD +++ I+ CR K EM
Sbjct: 500 FNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMV 559
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
G P+ +T I++H+L + ++K+ KM++D D
Sbjct: 560 MWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDV----------------F 603
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+N +I S C + +A KL + PD T+ +K+ C R + L
Sbjct: 604 SFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAK---ELF 660
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
M + G +P T ++ + L K+ A ++I
Sbjct: 661 LSMEANGCMPDSFTCNIILDALVKQDQFEAAQKI 694
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 172 VMRRLDTRAMS--VLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKS 228
VM L A++ +L+ +L V + K+ K + D I+ F+ LI +C+ K
Sbjct: 559 VMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKV 618
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+ A+K M G PD +Y FI+ +C+ F + M+ GC P TC I+
Sbjct: 619 EDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGCMPDSFTCNII 678
Query: 289 MHALEKAKQIYEALKV 304
+ AL K Q A K+
Sbjct: 679 LDALVKQDQFEAAQKI 694
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 152 LVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK----DC 207
L K DE+ G +S +S TR + ++D LVK NS+ AY LKF+ D
Sbjct: 197 LAKYCDEIF-GQISFLGISP-----STRLYNAVIDALVKSNSLDLAY---LKFQQMSADN 247
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+++LIHG C++ D A + +K+M G+SP+ +YT I+ + K +
Sbjct: 248 CKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAF 307
Query: 268 YTLKEMQEKGCKPS----------VITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
L+ M+ + PS V C A E A + E V +++ D L
Sbjct: 308 RVLETMKARKVSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLL 364
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 2/149 (1%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D S ++D L + + A F + +S ++ +++LIH C + K +
Sbjct: 531 DIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLL 590
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++M G +PD S+ I+ +CR M G P T + ++
Sbjct: 591 RKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQS 650
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ EA +++ M+++ C+ D SF ++I
Sbjct: 651 GRFNEAKELFLSMEANGCMPD-SFTCNII 678
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 79/205 (38%), Gaps = 22/205 (10%)
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A +K+ + G PD ++ + + D +V L E+G K T ++
Sbjct: 376 AGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIK 435
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILSKAV------------- 331
AL A ++ E + +M D L + Y+ +I ++ KA
Sbjct: 436 ALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPP 495
Query: 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+ +NT+I C E + L + E KPD T + + C K+++D L
Sbjct: 496 NLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDA---L 552
Query: 392 NLMREMLSKGIVPQESTHKMLAEEL 416
EM+ G+ P T+ +L L
Sbjct: 553 GCFSEMVMWGLSPNAVTYNILIHSL 577
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/163 (19%), Positives = 69/163 (42%), Gaps = 2/163 (1%)
Query: 163 YVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHG 221
Y+ ++ M + + D VL + L ++ V + ++ K ++ ++ +LI
Sbjct: 133 YIWVSNMDPLFAK-DQSVKGVLANCLYRKGPVVLSVELLKDIKASGYRINEELLCILIGS 191
Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
W + + Y + ++ G SP Y I+ + ++M CKP
Sbjct: 192 WGRLGLAKYCDEIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPD 251
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
T I++H + ++ + EAL++ ++M+ + Y+ LI
Sbjct: 252 RFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILI 294
>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 418
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 129/310 (41%), Gaps = 36/310 (11%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W +E L GY + ++LM + VK
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWGFYEE--NLECGYPA-----------SLYFFNILMHSFVK 148
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A VF K + S F+ L++G+ K + + M G PD +
Sbjct: 149 EGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYT 208
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+ I C+E + EM +KG P+ +T T ++ K ++ A+++Y++M
Sbjct: 209 YSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 268
Query: 310 SDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEG 350
S D Y++LI+ L K + Y T+I C +
Sbjct: 269 SQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLE 328
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A + R+++ +++ + D + + C + R D ++REMLS G+ P+ T+
Sbjct: 329 TAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLKPEIGTYT 385
Query: 411 MLAEELEKKS 420
M+ E KK
Sbjct: 386 MIINEFCKKG 395
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/388 (22%), Positives = 154/388 (39%), Gaps = 60/388 (15%)
Query: 51 TQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVE 110
TQ D + +++ES L + I + L+++H+ R + + KV+E
Sbjct: 61 TQRSDIYVFSGLITAYLESGFLRDA--IECYRLTKEHK---------FRVPFDTCRKVLE 109
Query: 111 ---ALKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM---------WEL-- 152
LK F W + GY + +N ++ + K + L W L
Sbjct: 110 HLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRP 169
Query: 153 -VKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVF 201
V + L NGY+ L ++ R + D SVL++ L K + + A +F
Sbjct: 170 SVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLF 229
Query: 202 LKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
+ D + + F LI G CK + D A + K+M SPD ++Y I C++
Sbjct: 230 DEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 289
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
D ++ + EM KG KP IT T ++ K + A + ++M ++ D Y
Sbjct: 290 GDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
++L IS C +A K+ +++ KP+ T+ + C
Sbjct: 350 TAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQEST 408
K + G L++EM G +P T
Sbjct: 394 KGDVWTGS---KLLKEMQRDGYMPSVVT 418
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 124/328 (37%), Gaps = 77/328 (23%)
Query: 113 KCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LS 160
K + + G M + TYN + AL + G ++KE+ E L
Sbjct: 339 KAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILI 398
Query: 161 NGYVSLAAMSTVMRRLDTRAMSVLMDTLV----------KRNSVAHAYKVFLKFKDCISL 210
NGY LD + TLV KRN + A +F K + L
Sbjct: 399 NGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLL 458
Query: 211 SSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
I F+ LI G C D A + +KEM PD ++Y ++ YCRE +
Sbjct: 459 PDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQL 518
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
L EM+ +G KP I+ ++ K + +A +V ++M + T F ++
Sbjct: 519 LDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMT------TGFDPTI------ 566
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
L YN +I C +++EG HA
Sbjct: 567 ----LTYNALIQGLC-KNQEGE-------------------HAEE--------------- 587
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELE 417
L++EM+SKGI P +ST+ + E +E
Sbjct: 588 ---LLKEMVSKGITPDDSTYLSIIEAME 612
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 121/261 (46%), Gaps = 24/261 (9%)
Query: 195 AHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI 254
A+AY+ + K ++ S +++ IH + A +KEM + G PD V++ I
Sbjct: 340 AYAYRDEMISKGIMA-SLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILI 398
Query: 255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
YCR D ++ L EM KG +P+++T T +++ L K ++ EA ++ K++ + L
Sbjct: 399 NGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLL 458
Query: 315 TDTSFYSSLI------FILSKAVRFL-------------IYNTMISSACVRSEEGNALKL 355
D +++LI + +A + L YNT++ C + A +L
Sbjct: 459 PDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQL 518
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+++ KPD ++ + + MKD V + EM++ G P T+ L +
Sbjct: 519 LDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRD---EMMTTGFDPTILTYNALIQG 575
Query: 416 LEKKSLG-NAKERIDELLTHA 435
L K G +A+E + E+++
Sbjct: 576 LCKNQEGEHAEELLKEMVSKG 596
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/418 (19%), Positives = 156/418 (37%), Gaps = 84/418 (20%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
+ ++L + Y K EAL+CF + + G++ ET N M+ K + + W L
Sbjct: 148 IFDLLVRAYCELKKPNEALECF---YLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLY 204
Query: 154 KEIDELS--NGYVSLAAMSTV----------------MRRLDTRAMSVLMDTLVK----R 191
E+ ++ + + M V M L + V +T++ R
Sbjct: 205 AEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLR 264
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
A +F KD + ++ I G CK + + A + +M + G P+ V+Y
Sbjct: 265 GKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTY 324
Query: 251 TCFIEHYCREKDFRK-----------------------------------VDYTLKEMQE 275
I+ YC + D K D +KEM+E
Sbjct: 325 NALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMRE 384
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR--- 332
KG P +T I+++ + A + ++M Y+SLI++L K R
Sbjct: 385 KGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKE 444
Query: 333 ----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+++N +I C A +L ++++ PD T+ ++
Sbjct: 445 ADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQ 504
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLT 433
C + ++++ L+ EM +GI P ++ L K+ + +A DE++T
Sbjct: 505 GYCREGKVEEAR---QLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMT 559
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 109/258 (42%), Gaps = 27/258 (10%)
Query: 81 HAL-SEDHETDVDKVSEILRKRYPSPDKVV------------EALKCFCFTWAKTQTGYM 127
HAL E D D + + +R++ PD V +A + F G
Sbjct: 364 HALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQ 423
Query: 128 HTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT 187
T TY +++ LGK + +KE D L + + ++ + L+D
Sbjct: 424 PTLVTYTSLIYVLGKRNR-------MKEADALFSKIQQEGLLPDII------VFNALIDG 470
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
++ A+++ + + L +I ++ L+ G+C+ K + A++ + EM + G PD
Sbjct: 471 HCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPD 530
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
+SY I Y + D + EM G P+++T ++ L K ++ A ++ +
Sbjct: 531 HISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLK 590
Query: 307 KMKSDDCLTDTSFYSSLI 324
+M S D S Y S+I
Sbjct: 591 EMVSKGITPDDSTYLSII 608
>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 116/275 (42%), Gaps = 23/275 (8%)
Query: 158 ELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFD 216
EL N L M+ + + ++ L + V+ A +V ++L + +F
Sbjct: 302 ELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFT 361
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
+I G+C A++ +EM + G + D V++T I CR + ++ D L+EM +K
Sbjct: 362 TVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDK 421
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA------ 330
G V+T T+++ K + EA +V+ +M + Y++L L K
Sbjct: 422 GLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAA 481
Query: 331 -------------VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
+ YN++I+ C A+++ ++E + D T+ +
Sbjct: 482 NELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDT 541
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C N+++EML KGI P +T+ +L
Sbjct: 542 LCKSGEFDRAH---NMLQEMLDKGIKPSIATYNVL 573
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 107/241 (44%), Gaps = 24/241 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L D L K+ V A ++ + + L+ ++ LI+G CK + A + M EM
Sbjct: 466 TALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEA 525
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G D +YT I+ C+ +F + L+EM +KG KPS+ T ++M+ + ++
Sbjct: 526 AGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEG 585
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR--FLIYNTMISSACVRSEEGNALKLRQK 358
K+ E ++L K VR + YN+++ C+ + ++ +
Sbjct: 586 GKKLLE------------------WMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKG 627
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
+ P+ T+ +K C + MK+ L +EM+ KG+ S++ L L K
Sbjct: 628 MHSQEVAPNENTYNILIKGHCKARNMKEA---LYFHQEMIEKGLRLTASSYSALIRLLNK 684
Query: 419 K 419
K
Sbjct: 685 K 685
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 96/203 (47%), Gaps = 14/203 (6%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN+++ L K FG + + ++ + E M R D + L+DTL K
Sbjct: 499 TYNSLINGLCK---FGNLEQAMRIMTE----------MEAAGHRTDVYTYTTLIDTLCKS 545
Query: 192 NSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
A+ + + D I S ++VL++G+C + + + +K ++ M + P+ V+Y
Sbjct: 546 GEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTY 605
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
++ YC +K+ + K M + P+ T I++ KA+ + EAL +++M
Sbjct: 606 NSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIE 665
Query: 311 DDCLTDTSFYSSLIFILSKAVRF 333
S YS+LI +L+K +F
Sbjct: 666 KGLRLTASSYSALIRLLNKKKKF 688
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 21/182 (11%)
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
PD V+Y + YC + L EM KG + + T V+ L Q+ +AL+V
Sbjct: 285 PDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRV 344
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
E M D +++ T+IS C + + A +L +++++
Sbjct: 345 LEDMTMHGVALDA----------------VVFTTVISGFCSKGDLAAARRLFEEMQKRGL 388
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNA 424
D TH + C +K+ VL +EM+ KG+ T+ +L + K+ GN
Sbjct: 389 AADRVTHTALINGLCRAGELKEADRVL---QEMVDKGLDVDVVTYTVLIDGYCKR--GNM 443
Query: 425 KE 426
E
Sbjct: 444 VE 445
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 20/228 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ ++HG+C + + A K + EM G + YT I C + L++M
Sbjct: 290 YGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMT 349
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
G + T V+ + A +++E+M+ D +++L
Sbjct: 350 MHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTAL----------- 398
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
I+ C E A ++ Q++ + D T+ + C + M + V N
Sbjct: 399 -----INGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHN-- 451
Query: 395 REMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATEQRTF 441
EM+ + + P T+ L++ L K+ + A E + E+ E +
Sbjct: 452 -EMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVY 498
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 133/346 (38%), Gaps = 74/346 (21%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G + TYN +++AL K+ + +L E MS D + +
Sbjct: 174 GLIPNVFTYNILLKALCKNDRVDAAHKLFVE-------------MSNKGCPPDAVTYTTM 220
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
+ +L K + A ++ +FK S +++ LI G CK + + A K + EM +G
Sbjct: 221 VSSLCKAGKIDDARELAGRFKP----SVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVD 276
Query: 245 PDGVSYTCFIEHYCREKD------------FRKVDYTL---------------------- 270
P+ VSY+C I C + R D +
Sbjct: 277 PNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDL 336
Query: 271 -KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
K M + GC+P+V+ ++H L + EAL+V ++M+ CL + + YS LI +K
Sbjct: 337 WKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAK 396
Query: 330 A-------------------VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ + Y M+ C S A L +K+ + C P+ T
Sbjct: 397 SGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTIT 456
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+K C R++ M L+ M G +P +T+ L + L
Sbjct: 457 FNTFIKGLCGNGRVEWAM---KLLERMQGHGCLPNITTYNELLDAL 499
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 105/238 (44%), Gaps = 22/238 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
+ A + L+ L S+ A +V ++ C+ + + +LI G+ K+ A +
Sbjct: 348 NVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLP-NVTTYSILIDGFAKSGDLVGASET 406
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
M HG P+ V+YTC ++ C+ F + + +++M +GC P+ IT + L
Sbjct: 407 WNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCG 466
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
++ A+K+ E+M+ CL + + Y+ L+ L + ++ EE A
Sbjct: 467 NGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKY--------------EE--AFG 510
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
L Q+IE + +P+ T+ L M + L L + L +G P T+ +
Sbjct: 511 LFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEA---LQLFGKALVRGTAPDSITYNTM 565
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/362 (20%), Positives = 148/362 (40%), Gaps = 51/362 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE--IDELS----------NGYV 164
F+ + HT TY M+E LG+ + ++ ++++ +D ++ NGY
Sbjct: 61 FSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYK 120
Query: 165 SLAAMSTVMRRL----------DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQ 213
+ + ++ R + L+D L+ N ++ KD + +
Sbjct: 121 RVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVF 180
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+++L+ CK + D A K EM G PD V+YT + C+ K+D +E+
Sbjct: 181 TYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAG---KID-DAREL 236
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA--- 330
+ KPSV ++ + K +I A+K+ +M + + YS +I L +
Sbjct: 237 AGR-FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNV 295
Query: 331 -VRFLIYNTMISSAC---------------VRSEEGNALKLRQKIEEDSCKPDCETHARS 374
+ F ++ M C +R + AL L + + +D C+P+ +
Sbjct: 296 ELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTL 355
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLT 433
+ C +++ + V + +M G +P +T+ +L + K L A E + +++
Sbjct: 356 IHGLCSNGSLEEALQVCD---QMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMIS 412
Query: 434 HA 435
H
Sbjct: 413 HG 414
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 20/223 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LIHG C + A + +M + G P+ +Y+ I+ + + D T M
Sbjct: 352 YNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMI 411
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
GC+P+V+T T ++ L K +A + EKM + C +T +
Sbjct: 412 SHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNT----------------I 455
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+NT I C A+KL ++++ C P+ T+ L + ++ L
Sbjct: 456 TFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEA---FGLF 512
Query: 395 REMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHAT 436
+E+ ++ + P T+ + + +G A + + L T
Sbjct: 513 QEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGT 555
>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
Length = 1091
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/373 (22%), Positives = 151/373 (40%), Gaps = 51/373 (13%)
Query: 85 EDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSK 144
E D V +LR P P + +E FT A Q +HT E+ N M+E +
Sbjct: 62 ERRVVGTDSVVHMLRSA-PDPAEALE-----LFTAAARQPTKVHTTESCNYMLELMRAHG 115
Query: 145 KFGLMWELVKEIDE----------------------LSNGYVSLAAMSTVMRRLDTRAMS 182
+ G M ++ + + L + V+L M L+ +
Sbjct: 116 RVGDMAQVFDLMQKQVVKTNVGTFATIFGGVGVEGGLRSAPVALPVMREAGMSLNAYTYN 175
Query: 183 VLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+ LVK A A +V+ +D IS S + + VL+ + K R D + EM
Sbjct: 176 GLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEAR 235
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G P+ SYT I + F + + L +M++ GCKP V+T T+++ L A ++ +A
Sbjct: 236 GVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDA 295
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
V+ KMK+ D D + Y T++ + + +++ +
Sbjct: 296 KAVFWKMKASDQKPDR----------------VTYITLLDKCGDSGDSQSVVEVWNAMVA 339
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
D + ++ + C R+ + + V + M+E KG+ P++ ++ L K +
Sbjct: 340 DGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKE---KGMSPEQYSYNSLISGFLKADM 396
Query: 422 GNAKERIDELLTH 434
+R EL H
Sbjct: 397 ---FDRALELFNH 406
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 117/276 (42%), Gaps = 29/276 (10%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ L K A+++F KFK +SL + ++ LI G D A+ EM + G
Sbjct: 737 LIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLG 796
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
PD +Y ++ + ++ KEM KG + + +T ++ L K+K++ +A+
Sbjct: 797 CGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAI 856
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-------------------IYNTMISSA 343
+Y + S+ Y L+ L K+ + + IYN +++
Sbjct: 857 DLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGH 916
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
+ N +L +K+ E PD +++ + C R+ DG+ + E+ G+
Sbjct: 917 RIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHEL---GLE 973
Query: 404 PQESTHKMLAEELEKKSLGNAKERIDELLTHATEQR 439
P + +L + L K ERI+E ++ E +
Sbjct: 974 PDLIVYNLLIDGLGK------SERIEEAVSLFNEMK 1003
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 110/267 (41%), Gaps = 33/267 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
GY T TYN ++ L KSK+ +L + +S G+ L
Sbjct: 831 GYESTYVTYNTIISGLVKSKRLEQAIDLYYNL--MSEGFSPTPC-----------TYGPL 877
Query: 185 MDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D L+K + A +F + + + I+++L++G ++ + ++M + G
Sbjct: 878 LDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGI 937
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+PD SYT I+ C +++ E G +P +I +++ L K+++I EA+
Sbjct: 938 NPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVS 997
Query: 304 VYEKMKSDDCLTDTSFYSSLIF-----------------ILSKAVR--FLIYNTMISSAC 344
++ +MK + + Y+SLI +L K + YN +I
Sbjct: 998 LFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYS 1057
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETH 371
V NA ++ C+P+ T+
Sbjct: 1058 VSGSTDNAYAAYGQMIVGGCQPNSSTY 1084
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 113/259 (43%), Gaps = 23/259 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ ++D L + V A VF + K+ +S ++ LI G+ K D A + M
Sbjct: 350 TAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNA 409
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G SP+G ++ FI +Y + K + M+ KG P V V+++L + ++
Sbjct: 410 CGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGM 469
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTMISSACV----------- 345
A +V+ ++K+ DT Y+ +I SKA + ++ M+ S CV
Sbjct: 470 AKRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLID 529
Query: 346 ---RSEEGN-ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
+ +GN A +L K++E +P T+ L + ++K+ V+ L+ EM
Sbjct: 530 TLYKGGKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKE---VMQLLEEMTRTI 586
Query: 402 IVPQESTHKMLAEELEKKS 420
P T+ + + L K
Sbjct: 587 YPPNLITYNTVLDCLSKNG 605
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 85/209 (40%), Gaps = 19/209 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ ++ C+ + D A EM + G SP+ SY I + + F + M
Sbjct: 349 YTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMN 408
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
G P+ T + ++ K+ Q +A++ YE MKS + D + +++++ L+ + R
Sbjct: 409 ACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRL- 467
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
G A ++ +++ PD T+ +K CC K D +N
Sbjct: 468 ---------------GMAKRVFYELKAMGVSPDTITYTMMIK-CCSKASKADE--AMNFF 509
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGN 423
+M+ G VP L + L K GN
Sbjct: 510 SDMVESGCVPDVLALNSLIDTLYKGGKGN 538
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D A++ L+DTL K A+++F K K+ I ++ ++ L+ G + K + +
Sbjct: 520 DVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLL 579
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM + + P+ ++Y ++ + + L M EKGC P + + VM+ L K
Sbjct: 580 EEMTRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKE 639
Query: 296 KQIYEALKVYEKMK 309
+++ EA +++ +MK
Sbjct: 640 ERLEEAFRMFCQMK 653
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 86/223 (38%), Gaps = 25/223 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMSTV 172
G+ TP TY +++ L KS K L E+ E L NG+ V
Sbjct: 866 GFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENV 925
Query: 173 MRRL----------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ--IFDVLIH 220
+ D ++ ++L+DTL + F + + + L ++++LI
Sbjct: 926 CQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHE-LGLEPDLIVYNLLID 984
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G K+ + + A EM + G P+ +Y I H + + +E+ KG KP
Sbjct: 985 GLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKP 1044
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
SV T ++ + A Y +M C ++S Y L
Sbjct: 1045 SVFTYNALIRGYSVSGSTDNAYAAYGQMIVGGCQPNSSTYMQL 1087
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/203 (17%), Positives = 83/203 (40%), Gaps = 19/203 (9%)
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+ +++ + + A++ E+ G SPD ++YT I+ + + +M E
Sbjct: 455 NAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVE 514
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR--- 332
GC P V+ ++ L K + EA +++ K+K Y++L+ L + +
Sbjct: 515 SGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKE 574
Query: 333 ----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+ YNT++ E A+ + + E C PD ++ +
Sbjct: 575 VMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMY 634
Query: 377 MCCHKKRMKDGMLVLNLMREMLS 399
++R+++ + M+++L+
Sbjct: 635 GLIKEERLEEAFRMFCQMKKILA 657
>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Brachypodium distachyon]
Length = 857
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 131/323 (40%), Gaps = 51/323 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE--------LSNGYVSLAA 168
F W K Q G+ H TY M+ LG++++FG+M L+ E++ N +
Sbjct: 351 FHWLKRQPGFKHDGHTYTTMIGILGQARQFGIMRNLLHEMNRDRCKPTVVTYNRIIHAYG 410
Query: 169 MSTVMRRL--------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
+ +R D L+D K + A ++ + ++ + LS
Sbjct: 411 RANYLREAVKVFEEMEEAGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQE-VGLSPDT 469
Query: 215 F--DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
F +++ K + A K EM ++G +P+ V+Y I + +++ V ++
Sbjct: 470 FTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIIIALQAKARNYDNVVKLYRD 529
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
MQ G +P IT +IVM L + EA V+ +M+ D D Y L+ + KA
Sbjct: 530 MQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRR-DWAPDEPVYGLLVDLWGKA-- 586
Query: 333 FLIYNTMISSACVRSEEGN---ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
GN AL + +D +P+ T L R +D
Sbjct: 587 -----------------GNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYS 629
Query: 390 VLNLMREMLSKGIVPQESTHKML 412
VL + ML++G+VP T+ +L
Sbjct: 630 VL---QNMLAQGLVPSLQTYTLL 649
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 22/196 (11%)
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
Q GF DG +YT I + + F + L EM CKP+V+T ++HA +A +
Sbjct: 357 QPGFKHDGHTYTTMIGILGQARQFGIMRNLLHEMNRDRCKPTVVTYNRIIHAYGRANYLR 416
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMI 340
EA+KV+E+M+ D Y +LI I +KA Y+ M+
Sbjct: 417 EAVKVFEEMEEAGYEPDRVTYCTLIDIHAKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMV 476
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+ + A KL ++ E+ C P+ T+ + + K R D V+ L R+M
Sbjct: 477 NCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIIIALQA-KARNYDN--VVKLYRDMQVA 533
Query: 401 GIVPQESTHKMLAEEL 416
G P + T+ ++ E L
Sbjct: 534 GFRPDKITYSIVMEVL 549
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 22/180 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELS--------NGYVSLAA--------------M 169
TY+AMV LGK + ++L E+ E N ++L A M
Sbjct: 471 TYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIIIALQAKARNYDNVVKLYRDM 530
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSD 229
R D S++M+ L + A VF++ + + ++ +L+ W K D
Sbjct: 531 QVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRRDWAPDEPVYGLLVDLWGKAGNVD 590
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
A M Q G P+ + + + + F+ L+ M +G PS+ T T+++
Sbjct: 591 KALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLL 650
>gi|225460540|ref|XP_002272860.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61360
[Vitis vinifera]
gi|296081020|emb|CBI18524.3| unnamed protein product [Vitis vinifera]
Length = 513
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/345 (20%), Positives = 143/345 (41%), Gaps = 47/345 (13%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
V +L + + + +A + F F+ ++ + + + + + L + + F WEL+
Sbjct: 78 VENVLGRLFAAHSNGFKAFEFFKFSLQHSE--FCPSSDAFEKTLHILTRMRYFDKAWELM 135
Query: 154 KEIDELSNGYVSLAAMSTVMRRL-------DT-------------------RAMSVLMDT 187
+EI + ++L +MS ++ R+ DT +VL+
Sbjct: 136 EEIQQTHPSLLTLKSMSIMLSRIAKFQSYEDTLEAFGRMEKNVFFGREFGANEFNVLLRA 195
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+ + A VF K S +++ ++L+ G+ ++ + EM + GF P+
Sbjct: 196 FCTQRQMKEARSVFHKMHSRFSPNTKTMNILLLGFKESGDVTAVELFYHEMIRRGFKPNS 255
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
V+Y I+ YC++ F L+EM++ C P++ T T ++H A+ I A +++ +
Sbjct: 256 VTYNIRIDAYCKKGCFGDGLRLLEEMEKANCPPTLETITTLIHGAGVAQNISRARELFNE 315
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
+ + D +YN +SS E +AL L ++EE+ D
Sbjct: 316 ISIRNLQPDIG----------------VYNAFMSSLIRSREVQSALMLMDEMEEEGIGHD 359
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
T+ + ++ V L +M+ + VP+ T ML
Sbjct: 360 SMTYHTMFRGLMRSNGIEG---VSELYHKMIRRNFVPKTRTIVML 401
>gi|449454285|ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 141/346 (40%), Gaps = 43/346 (12%)
Query: 84 SEDHETDVDKVSEILRKRYPSPD---------------KVVEALKCFCFTWAKTQTGYMH 128
E + +K+ E +R+ SPD +++EA + F + G +
Sbjct: 235 GEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMG-LP 293
Query: 129 TPET--YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
P T YN M+E G+ E D + N L R+ ++ M
Sbjct: 294 KPNTVTYNLMLEGFCSE---GMFEEARAIFDSMKNS-----------ETLSLRSYNIWML 339
Query: 187 TLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
LV+ + A+ + + + I + +++L+HG CK A+ + M + G +P
Sbjct: 340 GLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAP 399
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D V+Y+ + YCR + +Y L+EM + GC P++ TC I++H+L K + EA +
Sbjct: 400 DTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLL 459
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE-----GNALKLRQKIE 360
+ M D +++I L KA ++S R GN+ I
Sbjct: 460 QMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIR 519
Query: 361 EDS--CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ C PD T+A + C R+ + L EM+ K + P
Sbjct: 520 NNGKKCLPDSITYATIIGGLCKVGRVDEAKKKL---LEMIGKKLSP 562
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 1/142 (0%)
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
NS + + K C+ S + +I G CK + D A+K + EM SPD + +
Sbjct: 510 NSFIDLFDIRNNGKKCLP-DSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFD 568
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
FI +YC++ LKEM++KGC S+ T ++ L QI+E + ++MK
Sbjct: 569 TFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKER 628
Query: 312 DCLTDTSFYSSLIFILSKAVRF 333
+ Y+++I LS+ +
Sbjct: 629 GIFPNVYTYNNIISCLSEGGKL 650
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 115/273 (42%), Gaps = 38/273 (13%)
Query: 169 MSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRK 227
M+ + T ++L+ L + + +A +VF K + ++ +L+ G+C+
Sbjct: 144 MAVARVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGL 203
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
+ + EM G P+ V+Y I C E + + +++M+E G P ++T
Sbjct: 204 HSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNC 263
Query: 288 VMHALEKAKQIYEALKVYEKMKSDD------------CLTDTSFYSSLIFILSKAVRFLI 335
+ AL K+ QI EA +++ M+ D+ L F S +F ++A I
Sbjct: 264 RIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARA----I 319
Query: 336 YNTMISS-------------ACVRSEEGNALK---LRQKIEEDSCKPDCETHARSLKMCC 379
+++M +S VRS G L+ + ++ E + KP+ ++ + C
Sbjct: 320 FDSMKNSETLSLRSYNIWMLGLVRS--GKLLEAHLILNEMAEKNIKPNLYSYNILVHGLC 377
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
D +L LMRE G+ P T+ L
Sbjct: 378 KYGMFSDARSILGLMRE---SGVAPDTVTYSTL 407
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 92/223 (41%), Gaps = 11/223 (4%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVK--------EIDELSNGYVSLAAMSTVM 173
+ GY T N M+ L K+ E+V + L N ++ L +
Sbjct: 463 NERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNG 522
Query: 174 RRL--DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDY 230
++ D+ + ++ L K V A K L+ +S S IFD I+ +CK K
Sbjct: 523 KKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSS 582
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A + +KEM + G + +Y I+ E ++ + EM+E+G P+V T ++
Sbjct: 583 AFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIIS 642
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
L + ++ +A + ++M + + LI KA F
Sbjct: 643 CLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDF 685
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 68/180 (37%), Gaps = 17/180 (9%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
K+M P ++ I C +M EKGCKP+ + I++ +A
Sbjct: 142 KDMAVARVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRA 201
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ + ++M+S L + + YNT+ISS C + A KL
Sbjct: 202 GLHSHGIDLLDEMRSSGALPNR----------------VAYNTVISSLCGEGQTVEAEKL 245
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV-PQESTHKMLAE 414
+K+ E PD T + C ++ + + M+ G+ P T+ ++ E
Sbjct: 246 VEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLE 305
>gi|242074540|ref|XP_002447206.1| hypothetical protein SORBIDRAFT_06g030430 [Sorghum bicolor]
gi|241938389|gb|EES11534.1| hypothetical protein SORBIDRAFT_06g030430 [Sorghum bicolor]
Length = 446
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 134/328 (40%), Gaps = 48/328 (14%)
Query: 117 FTWAKTQTGYMHTP--ETYNAMVEALGKSKKFGLMWELV-------------KEIDELSN 161
F W+ + TG P T V+ LGK +F L L+ + L N
Sbjct: 60 FHWSASPTGANLPPTAATLARAVDILGKHFEFPLATSLLLSHHDPEDPAFLRPALRALLN 119
Query: 162 GYVSLAAMSTVMRRLDTRAMSV----------LMDTLVKRNSVAHA-YKVFLKFKDCISL 210
+ + +R D+ A S+ L+D L V A + F K
Sbjct: 120 RLAAANLVDDALRAFDSTAASIGLRDEASFHLLVDALCDHRRVDEADHLCFGKDPPPFPP 179
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ ++L+ GW KTR ++ +M + G + D SY+ +++ + K
Sbjct: 180 GTKTHNLLLRGWAKTRAWARLRQLWFDMDRRGVAKDLHSYSIYMDALAKSGKPWKTFKVF 239
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
KEM++KG + + +HA+ A+ + A+++Y +M C +T+ Y+ ++ + K
Sbjct: 240 KEMKQKGVRIDTVAYNTAIHAVGLAQGVDSAVRLYRQMVDAGCKPNTATYNGIVKLFCKE 299
Query: 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
RF +EG A Q++ + CKPD T+ C + + V
Sbjct: 300 GRF--------------KEGYAFV--QQMHKTGCKPDVLTYH------CFFQFLSRPQEV 337
Query: 391 LNLMREMLSKGIVPQESTHKMLAEELEK 418
L L +ML +G P+ T+ ML + +
Sbjct: 338 LGLFEKMLERGCQPRMDTYVMLIKRFGR 365
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 86/194 (44%), Gaps = 17/194 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
+Y+ ++AL KS K W+ K E+ V R+DT A + + +
Sbjct: 218 SYSIYMDALAKSGK---PWKTFKVFKEMKQKGV----------RIDTVAYNTAIHAVGLA 264
Query: 192 NSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A +++ + D ++ ++ ++ +CK + +++M + G PD ++Y
Sbjct: 265 QGVDSAVRLYRQMVDAGCKPNTATYNGIVKLFCKEGRFKEGYAFVQQMHKTGCKPDVLTY 324
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
CF + R ++ V ++M E+GC+P + T +++ + + V++ M+
Sbjct: 325 HCFFQFLSRPQE---VLGLFEKMLERGCQPRMDTYVMLIKRFGRWGFLRPVFIVWKAMEE 381
Query: 311 DDCLTDTSFYSSLI 324
D Y++LI
Sbjct: 382 QGLSPDAFAYNALI 395
>gi|449476381|ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 141/346 (40%), Gaps = 43/346 (12%)
Query: 84 SEDHETDVDKVSEILRKRYPSPD---------------KVVEALKCFCFTWAKTQTGYMH 128
E + +K+ E +R+ SPD +++EA + F + G +
Sbjct: 235 GEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMG-LP 293
Query: 129 TPET--YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
P T YN M+E G+ E D + N L R+ ++ M
Sbjct: 294 KPNTVTYNLMLEGFCSE---GMFEEARAIFDSMKNS-----------ETLSLRSYNIWML 339
Query: 187 TLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
LV+ + A+ + + + I + +++L+HG CK A+ + M + G +P
Sbjct: 340 GLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAP 399
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D V+Y+ + YCR + +Y L+EM + GC P++ TC I++H+L K + EA +
Sbjct: 400 DTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLL 459
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE-----GNALKLRQKIE 360
+ M D +++I L KA ++S R GN+ I
Sbjct: 460 QMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIR 519
Query: 361 EDS--CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ C PD T+A + C R+ + L EM+ K + P
Sbjct: 520 NNGKKCLPDSITYATIIGGLCKVGRVDEAKKKL---LEMIGKKLSP 562
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 1/142 (0%)
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
NS + + K C+ S + +I G CK + D A+K + EM SPD + +
Sbjct: 510 NSFIDLFDIRNNGKKCLP-DSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFD 568
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
FI +YC++ LKEM++KGC S+ T ++ L QI+E + ++MK
Sbjct: 569 TFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKER 628
Query: 312 DCLTDTSFYSSLIFILSKAVRF 333
+ Y+++I LS+ +
Sbjct: 629 GIFPNVYTYNNIISCLSEGGKL 650
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 115/273 (42%), Gaps = 38/273 (13%)
Query: 169 MSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRK 227
M+ + T ++L+ L + + +A +VF K + ++ +L+ G+C+
Sbjct: 144 MAVAKVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGL 203
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
+ + EM G P+ V+Y I C E + + +++M+E G P ++T
Sbjct: 204 HSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNC 263
Query: 288 VMHALEKAKQIYEALKVYEKMKSDD------------CLTDTSFYSSLIFILSKAVRFLI 335
+ AL K+ QI EA +++ M+ D+ L F S +F ++A I
Sbjct: 264 RIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARA----I 319
Query: 336 YNTMISS-------------ACVRSEEGNALK---LRQKIEEDSCKPDCETHARSLKMCC 379
+++M +S VRS G L+ + ++ E + KP+ ++ + C
Sbjct: 320 FDSMKNSETLSLRSYNIWMLGLVRS--GKLLEAHLILNEMAEKNIKPNLYSYNILVHGLC 377
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
D +L LMRE G+ P T+ L
Sbjct: 378 KYGMFSDARSILGLMRE---SGVAPDTVTYSTL 407
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 92/223 (41%), Gaps = 11/223 (4%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVK--------EIDELSNGYVSLAAMSTVM 173
+ GY T N M+ L K+ E+V + L N ++ L +
Sbjct: 463 NERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNG 522
Query: 174 RRL--DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDY 230
++ D+ + ++ L K V A K L+ +S S IFD I+ +CK K
Sbjct: 523 KKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSS 582
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A + +KEM + G + +Y I+ E ++ + EM+E+G P+V T ++
Sbjct: 583 AFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIIS 642
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
L + ++ +A + ++M + + LI KA F
Sbjct: 643 CLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDF 685
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 68/180 (37%), Gaps = 17/180 (9%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
K+M P ++ I C +M EKGCKP+ + I++ +A
Sbjct: 142 KDMAVAKVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRA 201
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ + ++M+S L + + YNT+ISS C + A KL
Sbjct: 202 GLHSHGIDLLDEMRSSGALPNR----------------VAYNTVISSLCGEGQTVEAEKL 245
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV-PQESTHKMLAE 414
+K+ E PD T + C ++ + + M+ G+ P T+ ++ E
Sbjct: 246 VEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLE 305
>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 733
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 135/331 (40%), Gaps = 39/331 (11%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA Q Y H P Y AM+E L K+K + + K + + L A + RR
Sbjct: 121 FYWADRQWRYRHDPIVYYAMLEILSKTK----LCQGAKRV-------LRLMAKRRIERR- 168
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
A +M + + + +A +V + K I I + IH + D A + +
Sbjct: 169 -PEAFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFL 227
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ M P+ ++Y C I+ YC + EM KGC P I+ VM L K
Sbjct: 228 ERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKE 287
Query: 296 KQIYEALKVYEKM-KSDDCLTDTSFYSSLIFILSK------AVRFL-------------I 335
K+I E + EKM K + L D Y++ + +LSK A+ FL
Sbjct: 288 KRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVG 347
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
Y+ ++ S C A ++ ++ C PD T+ + C ++++ ++R
Sbjct: 348 YSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAK---KMLR 404
Query: 396 EMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
+M G P ++ L L K GN+ E
Sbjct: 405 QMYKHGCKPNTVSYTALLNGLCKN--GNSLE 433
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 109/237 (45%), Gaps = 27/237 (11%)
Query: 204 FKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
KD L Q+ ++ +H K D A + ++E + F D V Y+ + +CRE
Sbjct: 301 LKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGR 360
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
K + EM KGC P V+T T V++ L + +++ +A K+ +M C +T Y++
Sbjct: 361 MDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTA 420
Query: 323 LIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI---EEDSCKPDCETHARSLKMCC 379
L+ L K GN+L+ R+ + EED P+ T+ S+ M
Sbjct: 421 LLNGLCK-------------------NGNSLEAREMMNMSEEDWWIPNAITY--SVLMHG 459
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
++ K +L+REM+ KG P +L + L +++ + AK +++ L +
Sbjct: 460 FRREGKSSE-ACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNG 515
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 22/225 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ ++H +C+ + D A++ + EMF G PD V+YT I C+E+ + L++M
Sbjct: 348 YSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMY 407
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA---- 330
+ GCKP+ ++ T +++ L K EA ++ + D + + YS L+ +
Sbjct: 408 KHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSS 467
Query: 331 -----VRFLI----------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
VR +I N +I S C + A + ++ + C + +
Sbjct: 468 EACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVI 527
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C K ++ L+L+ +M P T+ + + L KK
Sbjct: 528 HGFCQKDDLE---AALSLLDDMYLSNKHPDVVTYTTIIDALGKKG 569
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 19/186 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ VL+HG+ + KS A ++EM + GF P V I+ C+E+ + +++
Sbjct: 453 YSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCL 512
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
GC +V+ T V+H + + AL + + M + D Y+++I L K R
Sbjct: 513 NNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRI- 571
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
EE A KL K+ P T+ + C R++D +L L+
Sbjct: 572 -------------EE--ATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVED---LLKLL 613
Query: 395 REMLSK 400
+MLS+
Sbjct: 614 EKMLSR 619
>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 418
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 130/314 (41%), Gaps = 44/314 (14%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W +E L GY + ++LM + VK
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWGFYEE--SLECGYPA-----------SLYFFNILMHSFVK 148
Query: 191 RNSVAHAYKVFLKFKDCI---SLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+ A VF D I SL + F+ L++G+ K D + M G P
Sbjct: 149 EGEIRLAQSVF----DAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQP 204
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D +Y+ I C+E + EM + G P+ +T T ++ K ++ A+++Y
Sbjct: 205 DVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIY 264
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVR 346
++M S D Y++LI+ L K + Y T+I C
Sbjct: 265 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKE 324
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
+ A + R+++ +++ + D + + C + R D ++REMLS G+ P+
Sbjct: 325 GDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLKPEI 381
Query: 407 STHKMLAEELEKKS 420
T+ M+ E KK
Sbjct: 382 GTYTMIINEFCKKG 395
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 90/388 (23%), Positives = 155/388 (39%), Gaps = 60/388 (15%)
Query: 51 TQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVE 110
TQ D + +++ES L + I + L+++H+ R + + KV+E
Sbjct: 61 TQRSDIYVFSGLITAYLESGFLRDA--IECYRLTKEHK---------FRVPFDTCRKVLE 109
Query: 111 ---ALKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM---------WEL-- 152
LK F W + GY + +N ++ + K + L W L
Sbjct: 110 HLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRP 169
Query: 153 -VKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF 201
V + L NGY+ L AM + D SVL++ L K + + A ++F
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELF 229
Query: 202 LKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
+ D + + + F LI G CK + D A + K+M SPD ++Y I C++
Sbjct: 230 DEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 289
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
D ++ + EM KG KP IT T ++ K + A + ++M ++ D Y
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
++L IS C +A K+ +++ KP+ T+ + C
Sbjct: 350 TAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQEST 408
K + G L++EM G +P T
Sbjct: 394 KGDVWTGS---KLLKEMQRDGCMPSVVT 418
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 115/267 (43%), Gaps = 25/267 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKSDYAQKAM 235
D ++ MD + K V +F + L + + +LIHG K ++
Sbjct: 261 DLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIF 320
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M Q GF+ D +Y ++ +C+ K L+EM+EK +P+V T ++ L K
Sbjct: 321 HAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKI 380
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTMIS---------- 341
++ EA ++E+ KS + YSSLI K R +LI M+
Sbjct: 381 DRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTW 440
Query: 342 ----SACVRSEEGN-ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
A V++EE N AL Q ++E C P+ T++ + C ++ + ++
Sbjct: 441 NSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFV---FWQD 497
Query: 397 MLSKGIVPQESTHKMLAEELEKKSLGN 423
M +G+VP T+ + L K +GN
Sbjct: 498 MQKQGLVPNVVTYTTMISGLAK--VGN 522
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 107/249 (42%), Gaps = 49/249 (19%)
Query: 120 AKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTR 179
A Q G+ YNA+V+ KS K +E+++E+ E V + T
Sbjct: 322 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKE-----------KCVQPTVAT- 369
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
++D L K + + AY +F + K I L+ ++ LI G+ K + D A ++EM
Sbjct: 370 -YGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEM 428
Query: 239 FQHGFSPD-----------------------------------GVSYTCFIEHYCREKDF 263
+ G +P+ +Y+ I CR + +
Sbjct: 429 MKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKY 488
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
K ++MQ++G P+V+T T ++ L K I +A ++E+ K++ + D + +++L
Sbjct: 489 NKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNAL 548
Query: 324 IFILSKAVR 332
I +S A R
Sbjct: 549 IEGMSNANR 557
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/310 (20%), Positives = 131/310 (42%), Gaps = 36/310 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
YN M+ G + +F ++L++ + E + +V+ + + ++ L K+
Sbjct: 55 AYNTMIMGYGSAGRFEDAYKLLERLRER-------GCIPSVV------SFNSILTCLGKK 101
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
V A +F K +S ++++I C + + A + + EM P+ ++
Sbjct: 102 RKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVN 161
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
++ C+ + + + ++GC P +T ++ L K Q+ EA +++EKM
Sbjct: 162 IMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDA 221
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+ Y+SLI F I+ R E+G+ K+ +++ CKPD
Sbjct: 222 GHNANPVVYTSLI------RNFFIHG--------RKEDGH--KIFKELIRRGCKPDLTLL 265
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431
+ ++ G ++ +R S G +P ++ +L L K G A+E +
Sbjct: 266 NTYMDCVFKAGEVEKGRMIFEDIR---SYGFLPDVRSYSILIHGLTKA--GQARETSN-- 318
Query: 432 LTHATEQRTF 441
+ HA +Q+ F
Sbjct: 319 IFHAMKQQGF 328
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 31/200 (15%)
Query: 197 AYKVFLKFK------DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
A+K F + K D +S +S I+ + CK + A++ +M P +Y
Sbjct: 2 AWKFFHELKAQGLKPDDVSYTSMIWVL-----CKAGRLGEAEELFAQMEAERSVPCAYAY 56
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I Y F L+ ++E+GC PSV++ ++ L K +++ EAL ++E MK
Sbjct: 57 NTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK 116
Query: 311 DDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRSEEGN 351
D ++S Y+ +I +L R L N M+ C +
Sbjct: 117 -DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEE 175
Query: 352 ALKLRQKIEEDSCKPDCETH 371
A K+ + + C PDC T+
Sbjct: 176 AYKIFESASQRGCNPDCVTY 195
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 14/172 (8%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
Y+++++ GK V IDE Y+ L M + + L+D LVK
Sbjct: 405 YSSLIDGFGK----------VGRIDE---AYLILEEMMKKGLTPNVYTWNSLLDALVKAE 451
Query: 193 SVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
+ A F K+ ++ + +LI+G C+ +K + A ++M + G P+ V+YT
Sbjct: 452 EINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYT 511
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
I + + + + G P + ++ + A + EA +
Sbjct: 512 TMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQ 563
>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
Length = 585
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/369 (20%), Positives = 136/369 (36%), Gaps = 75/369 (20%)
Query: 126 YMHTPET---YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+MH P + +N ++ ++ K+K++ ++ L ++D D ++
Sbjct: 60 HMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFG-------------IPPDVYTLN 106
Query: 183 VLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+L+++ N A+ V K K + + F LI G C K A +M
Sbjct: 107 ILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGE 166
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
GF P+ V+Y I C+ + L+ M++ C+P V+ T ++ +L K +Q+ EA
Sbjct: 167 GFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEA 226
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIF----------------------ILSKAVRF------ 333
++ KM D Y+SLI I+ V F
Sbjct: 227 FNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDA 286
Query: 334 --------------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
+ YN ++ C++SE A+K+ + + P+
Sbjct: 287 LCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPN 346
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKE 426
++ + C +RM L EM K ++P T+ L L L +A
Sbjct: 347 VISYNTLINGYCKIQRMDKATY---LFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIA 403
Query: 427 RIDELLTHA 435
E++ H
Sbjct: 404 LFHEMVAHG 412
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 105/246 (42%), Gaps = 20/246 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D S ++D L K + A+ V + + + ++ L+ G C + D A K
Sbjct: 276 DVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVF 335
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M +G++P+ +SY I YC+ + K Y +EM +K P+ +T +MH L
Sbjct: 336 DTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHV 395
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ +A+ ++ +M + + D + Y L+ L C +S A+ L
Sbjct: 396 GRLQDAIALFHEMVAHGQIPDLATYRILLDYL----------------CKKSHLDEAMAL 439
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ IE + PD + + + C ++ ++ + SKG+ P T+ ++
Sbjct: 440 LKTIEGSNMDPDIQIYTIVIDGMCRAGELEAAR---DIFSNLSSKGLRPNVRTYTIMING 496
Query: 416 LEKKSL 421
L ++ L
Sbjct: 497 LCRRGL 502
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 106/245 (43%), Gaps = 20/245 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + ++D+L K V A+ +F K IS + LIH C + + +
Sbjct: 206 DVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLL 265
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+M PD V ++ ++ C+E + + M +G +P+V+T +M
Sbjct: 266 NQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQ 325
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ EA+KV++ M + A + YNT+I+ C A L
Sbjct: 326 SEMDEAVKVFDTMVHN----------------GYAPNVISYNTLINGYCKIQRMDKATYL 369
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+++ + P+ T+ + CH R++D + L EM++ G +P +T+++L +
Sbjct: 370 FEEMCQKELIPNTVTYNTLMHGLCHVGRLQDA---IALFHEMVAHGQIPDLATYRILLDY 426
Query: 416 LEKKS 420
L KKS
Sbjct: 427 LCKKS 431
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 89/241 (36%), Gaps = 27/241 (11%)
Query: 153 VKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL-- 210
V + L NGY + M + L+ V N++ H + +D I+L
Sbjct: 347 VISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFH 406
Query: 211 ----SSQIFD-----VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
QI D +L+ CK D A +K + PD YT I+ CR
Sbjct: 407 EMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAG 466
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
+ + KG +P+V T TI+++ L + + EA K++ +M + C D
Sbjct: 467 ELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGC--- 523
Query: 322 SLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
YNT+ E A++L Q++ D T ++M C
Sbjct: 524 -------------TYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDD 570
Query: 382 K 382
K
Sbjct: 571 K 571
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 79/207 (38%), Gaps = 22/207 (10%)
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A + M P V + + + K + V +M G P V T I+
Sbjct: 49 DDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNIL 108
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAV---- 331
+++ + A V K+ DT+ +++LI + K +
Sbjct: 109 INSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGF 168
Query: 332 --RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ Y T+I+ C A++L + +E+ +C+PD + + C +++ +
Sbjct: 169 QPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEA-- 226
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEEL 416
NL +M+ +GI P T+ L L
Sbjct: 227 -FNLFSKMVGQGISPDIFTYTSLIHSL 252
>gi|147789025|emb|CAN75780.1| hypothetical protein VITISV_012424 [Vitis vinifera]
Length = 515
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/345 (20%), Positives = 143/345 (41%), Gaps = 47/345 (13%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
V +L + + + +A + F F+ ++ + + + + + L + + F WEL+
Sbjct: 78 VENVLGRLFAAHSNGFKAFEFFKFSLQHSE--FCPSSDAFEKTLHILTRMRYFDKAWELM 135
Query: 154 KEIDELSNGYVSLAAMSTVMRRL-------DT-------------------RAMSVLMDT 187
+EI + ++L +MS ++ R+ DT +VL+
Sbjct: 136 EEIQQTHPSLLTLKSMSIMLSRIAKFQSYEDTLEAFGRMEKNVFFGREFGANEFNVLLRA 195
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+ + A VF K S +++ ++L+ G+ ++ + EM + GF P+
Sbjct: 196 FCTQRQMKEARSVFHKMHSRFSPNTKTMNILLLGFKESGDVTAVELFYHEMIRRGFKPNS 255
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
V+Y I+ YC++ F L+EM++ C P++ T T ++H A+ I A +++ +
Sbjct: 256 VTYNIRIDAYCKKGCFGDGLRLLEEMEKANCPPTLETITTLIHGAGVAQNISRARELFNE 315
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
+ + D +YN +SS E +AL L ++EE+ D
Sbjct: 316 ISIRNLQPDIG----------------VYNAFMSSLIRSREVQSALMLMDEMEEEGIGHD 359
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
T+ + ++ V L +M+ + VP+ T ML
Sbjct: 360 SMTYHTMFRGLMRSNGIEG---VSELYHKMIRRNFVPKTRTIVML 401
>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
Length = 687
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 142/323 (43%), Gaps = 39/323 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYNA++ K FG M E + GY + VM + T S +D K
Sbjct: 260 TYNALINCFCK---FGRM--------ETAYGYFAAMKREGVMANVVT--FSTFVDAFCKE 306
Query: 192 NSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A K+F + + ++L+ + LI G CK + D A + EM + G + V+Y
Sbjct: 307 GLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTY 366
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T ++ C+E+ + + L+ M++ G + + + T ++H K +AL + +MK+
Sbjct: 367 TVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKN 426
Query: 311 DDCLTDTSFYSSLI-------------FILSKA------VRFLIYNTMISSACVRSEE-G 350
D S Y +LI +L+K ++IY TM+ AC +S +
Sbjct: 427 KGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMM-DACFKSGKVP 485
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A+ + QKI + +P+ T+ + C + + + N MR++ G+ P +
Sbjct: 486 EAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDL---GLDPNVQAYT 542
Query: 411 MLAEELEKKS-LGNAKERIDELL 432
L + L K L A + +E++
Sbjct: 543 ALVDGLCKNGCLNEAVQLFNEMV 565
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/210 (19%), Positives = 90/210 (42%), Gaps = 22/210 (10%)
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D + + ++ +F+ +P+ ++ I+ C+E + + M+E GC P V+T +
Sbjct: 170 DRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSL 229
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--------------- 333
+ K ++ E ++ E+M+ C D Y++LI K R
Sbjct: 230 IDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGV 289
Query: 334 ----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ ++T + + C A+KL ++ + T+ + C R+ D ++
Sbjct: 290 MANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIV 349
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKK 419
+L+ EM+ +G+ T+ +L + L K+
Sbjct: 350 LLD---EMVRQGVPLNVVTYTVLVDGLCKE 376
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 1/142 (0%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+D L K S+ A F K +D + + Q + L+ G CK + A + EM G
Sbjct: 509 LIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKG 568
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
S D V YT ++ Y ++ + +M + G + + T + + EA
Sbjct: 569 MSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAR 628
Query: 303 KVYEKMKSDDCLTDTSFYSSLI 324
+V+ +M D + Y+ LI
Sbjct: 629 EVFSEMIGHGIAPDRAVYNCLI 650
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 90/218 (41%), Gaps = 27/218 (12%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I+ ++ K+ K A ++++ GF P+ ++Y I+ C+ + +M
Sbjct: 470 IYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKM 529
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
++ G P+V T ++ L K + EA++++ +M D Y++L+ K
Sbjct: 530 RDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLK---- 585
Query: 334 LIYNTMISSACVRSEEGN---ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
+GN A L+ K+ + + D + + C+ M + V
Sbjct: 586 ---------------QGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREV 630
Query: 391 LNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
+ EM+ GI P + + L + +K LGN +E I
Sbjct: 631 FS---EMIGHGIAPDRAVYNCLISKYQK--LGNLEEAI 663
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 1/134 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ +A + L+D L K + A ++F + +SL ++ L+ G+ K A
Sbjct: 537 NVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALK 596
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+M G D YTCFI +C + EM G P ++ +K
Sbjct: 597 AKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKL 656
Query: 296 KQIYEALKVYEKMK 309
+ EA+ + ++M+
Sbjct: 657 GNLEEAISLQDEME 670
>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 443
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 116/250 (46%), Gaps = 23/250 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++L++ L ++ + A V K K + +S ++ L+HG+CK +K + A + + +M
Sbjct: 193 NILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTS 252
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD V+Y + C++ L ++ KGC P +IT V+ L K + +
Sbjct: 253 RGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQ 312
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRF-------------LIYNTMIS 341
A K+ ++M++ D YSSL+ LS+ A++F + YN ++
Sbjct: 313 AAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIML 372
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C + A+ + + CKP ++ ++ ++ K+ + +LN E+ +G
Sbjct: 373 GLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLN---ELCLRG 429
Query: 402 IVPQESTHKM 411
+V + S K+
Sbjct: 430 VVKKSSAEKV 439
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 115/267 (43%), Gaps = 33/267 (12%)
Query: 159 LSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV- 217
L NG+VSL+ + ++ + + + L LV+ + ++ F + + I D+
Sbjct: 66 LGNGHVSLSPIHSLTNFEEIESNNNL-SKLVRNGELEEGFR----FLESMVYRGDIPDII 120
Query: 218 ----LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
LI G+CK K+ A + M+ + G PD ++Y I C + + L +M
Sbjct: 121 PCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADM 180
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+GC PSV+T I+++ L + + A+ V EKM C ++
Sbjct: 181 VRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNS---------------- 224
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML--VL 391
L YN ++ C + A++ K+ C PD T+ L C KDG + +
Sbjct: 225 LSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALC-----KDGKVDAAV 279
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEK 418
L+ ++ SKG P T+ + + L K
Sbjct: 280 ELLNQLSSKGCSPVLITYNTVIDGLSK 306
>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
Length = 1088
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 135/326 (41%), Gaps = 62/326 (19%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKF-------------GLMWELVKEIDELSNGYVSLAA 168
++ G TYNA++ L ++++ GL +V +E+ GY L
Sbjct: 552 SRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVT-YNEMIKGYCILG- 609
Query: 169 MSTVMRRLDTRAMSVLMDTLVKRNSVAH--AYKVFLK-FKDCISLSS--QIFDV------ 217
D + ++M+ +++R A+ Y +K + D + +S +I D+
Sbjct: 610 --------DPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC 661
Query: 218 ---------LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
LI G+CK K + A EM G P+ V+YT I+ YC+++
Sbjct: 662 KPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATS 721
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS 328
L+ M+ GC+P+V T +++H L K A ++ + M + +
Sbjct: 722 LLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNV----------- 770
Query: 329 KAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
+ Y MI C AL++ K+ E C P+ T++ ++ + ++++
Sbjct: 771 -----VTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAE 825
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAE 414
NL E+ G++P E T+ + E
Sbjct: 826 ---NLFAELERHGLIPDEITYVKMIE 848
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 20/210 (9%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I++ +I+ CK A+ MK++F+ SPD +YT I +CR+ D +M
Sbjct: 387 IYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQM 446
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------ 327
++GC+P+ +T + +++ L + ++ EA + +M L + I L
Sbjct: 447 AKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCY 506
Query: 328 SKAVRFLI-------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
A R + Y +IS CV A+ L ++ D P+ T+
Sbjct: 507 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNAL 566
Query: 375 LKMCCHKKRMKDGMLVLNLM-REMLSKGIV 403
+ + +R+K +VLNLM R L IV
Sbjct: 567 INILVENRRIKYAFVVLNLMGRNGLFTNIV 596
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 116/294 (39%), Gaps = 37/294 (12%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
++G +TYN ++ L K F EL K + E G T M
Sbjct: 728 RSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE--EGIFPNVVTYTAM--------- 776
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+D L K S + A ++F K + L + + + LI + K + A+ E+ +H
Sbjct: 777 --IDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERH 834
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK----AKQ 297
G PD ++Y IE Y L M + GC+P++ T +++ L+ A Q
Sbjct: 835 GLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQ 894
Query: 298 IYEALK--------VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMIS--SACVRS 347
AL Y+ D S S+ + L + + N ++S S R
Sbjct: 895 RLAALPDVVPNCSFGYQTTDQD----AVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRW 950
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
E N L L I + C PD E + L C R+++ L + + + M ++G
Sbjct: 951 FEANEL-LGSMISQGLC-PDQEAYNSLL---CSLLRVRNVDLAMGVFKHMSTQG 999
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 30/224 (13%)
Query: 197 AYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI 254
A+++F +K K C + + LI G C + A M + G P+ V+Y I
Sbjct: 509 AWRLFVDMKNKGC-EPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALI 567
Query: 255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
+ + L M G +++T Y +M C+
Sbjct: 568 NILVENRRIKYAFVVLNLMGRNGLFTNIVT--------------------YNEMIKGYCI 607
Query: 315 TDTSFYSSLIF--ILSKA--VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ L+ +L + + YNT+I C +AL++ + + CKPD +
Sbjct: 608 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 667
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ + C +M+ L EM+ G+ P E T+ L +
Sbjct: 668 YTELICGFCKISKMES---AFGLFNEMVDDGLCPNEVTYTALID 708
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 326 ILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+LS+ V+ LIYN +I++ C +A + +K+ E PD T+ + C K
Sbjct: 376 MLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHD 435
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
+ + V N +M +G P T+ L L + + A + I E++ H
Sbjct: 436 LDSALQVFN---QMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG 485
>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
Length = 442
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 121/277 (43%), Gaps = 26/277 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKV--FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D ++L++ K A ++ ++ + C ++ ++VL+ G C D A +
Sbjct: 41 DVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTP-NNVTYNVLMDGMCGEGDVDDALEL 99
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
++ + HG P V+Y ++ C + + D + EM + C P+ T +V+++L +
Sbjct: 100 LRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCR 159
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAVRF------LI 335
+ +A+++ EKM C + Y+++I +LSK + +
Sbjct: 160 KGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVT 219
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
YNT++ C + +A +L + ++ C PD T + C K M D + V +
Sbjct: 220 YNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVF---K 276
Query: 396 EMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDEL 431
+M KG P T+ + L K + L A E +E+
Sbjct: 277 QMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEM 313
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 22/221 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LIH C+ + A + +M G +PD V+Y +E C+ + +R+ + M+
Sbjct: 10 YNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMR 69
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
+GC P+ +T ++M + + +AL++ + S C T Y++++ L A R+
Sbjct: 70 AEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWG 129
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+N +I S C + A++L +K+ + C + T+ +
Sbjct: 130 DADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAII 189
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C ++ + M L+ +M S G P T+ L + L
Sbjct: 190 NGLCEQRNVDGAM---GLLSKMKSYGCKPDIVTYNTLLKGL 227
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/323 (19%), Positives = 145/323 (44%), Gaps = 42/323 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR---LDTRAMSVLMDTL 188
YN +++ L ++++G ELV E+ +R + +V++ +L
Sbjct: 114 NYNTVLKGLCSAERWGDADELVTEM----------------LRENCPPNEATFNVVIYSL 157
Query: 189 VKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
++ + A ++ K K + + ++ +I+G C+ R D A + +M +G PD
Sbjct: 158 CRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDI 217
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
V+Y ++ C + + + M + GC P +T ++ L + + +A++V+++
Sbjct: 218 VTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQ 277
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTM------------ISSACVRSEEG- 350
M C ++ YS++I L+KA + ++N M + + C+ ++
Sbjct: 278 MPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTI 337
Query: 351 -NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
A++ +K+++ P + L C + + +++M M+S G +P + T+
Sbjct: 338 EEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTE---FAIDIMAYMVSSGCMPDDLTY 394
Query: 410 KMLAEELEKKS-LGNAKERIDEL 431
+L E L + L A+E + +L
Sbjct: 395 VILIEGLAYEGYLNEARELLIKL 417
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 19/177 (10%)
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P+ +Y I C R L +M +GC P V+T I++ A K + +A+++
Sbjct: 5 PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMEL 64
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
+ M+++ C + + YN ++ C + +AL+L + + C
Sbjct: 65 IDLMRAEGCTPNN----------------VTYNVLMDGMCGEGDVDDALELLRNLPSHGC 108
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
KP + LK C +R D L+ EML + P E+T ++ L +K L
Sbjct: 109 KPSTVNYNTVLKGLCSAERWGDAD---ELVTEMLRENCPPNEATFNVVIYSLCRKGL 162
>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Brachypodium distachyon]
Length = 676
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 21/228 (9%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L++ L K A+++FLK S + + V+I G+CK K A+ + M +
Sbjct: 296 LINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQ 355
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G +P+ +YT I +C+E F + +M+ +G +P++ T ++ L K +I EA
Sbjct: 356 GLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEA 415
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
KV + D + Y MI+ C + AL L ++ E
Sbjct: 416 YKVLRMANNQGLQLDK----------------VTYTVMITEHCKQGHITYALDLFNRMAE 459
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
+ C PD T+ + C +++M++ L + L+ +VP + T+
Sbjct: 460 NGCHPDIHTYTTLIARYCQQRQMEESQ---KLFDKCLAIELVPTKQTY 504
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 19/201 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G CK K A K ++ G D V+YT I +C++ M
Sbjct: 399 YNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMA 458
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
E GC P + T T ++ + +Q+ E+ K+++K CL ++ + +K
Sbjct: 459 ENGCHPDIHTYTTLIARYCQQRQMEESQKLFDK-----CL-------AIELVPTKQT--- 503
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
Y +MI+ C + +AL++ +++ ++ C+ D T+ + C + R+++ L
Sbjct: 504 -YTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEAR---ALY 559
Query: 395 REMLSKGIVPQESTHKMLAEE 415
ML K +VP E T LA E
Sbjct: 560 EGMLDKRLVPCEVTPVTLAFE 580
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 99/253 (39%), Gaps = 29/253 (11%)
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
S A+A KVF + + + ++ F LI G C+ + + + M GF D +
Sbjct: 163 GSFAYARKVFDGMVTRGGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNAT 222
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
T + +C++ FR V + M E G P+V+ T + L K + +A V E+M
Sbjct: 223 CTVIVRVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMV 282
Query: 310 SDDCLTDTSFYSSLIFILSK------AVRFLI--------------YNTMISSACVRSEE 349
+ + ++SLI L K A R + Y MI C +
Sbjct: 283 AKGLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKL 342
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML--VLNLMREMLSKGIVPQES 407
A L ++ E P+ T+ + C K+G LM +M +G P
Sbjct: 343 ARAEMLLGRMVEQGLAPNTNTYTTLISGHC-----KEGSFNCAFELMNKMRREGFQPNIY 397
Query: 408 THKMLAEELEKKS 420
T+ L + L KK
Sbjct: 398 TYNALIDGLCKKG 410
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 52/277 (18%), Positives = 112/277 (40%), Gaps = 45/277 (16%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVK-------EIDELS----------NGYVSLA 167
G+ TYNA+++ L K K +++++ ++D+++ G+++ A
Sbjct: 391 GFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYA 450
Query: 168 -----AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL----SSQIFDVL 218
M+ D + L+ ++ + + K+F K C+++ + Q + +
Sbjct: 451 LDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDK---CLAIELVPTKQTYTSM 507
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
I G+CK KS A + + M Q+G D ++Y I C+E + + M +K
Sbjct: 508 IAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLDKRL 567
Query: 279 KPSVIT----------------CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
P +T ++ L+K ++ + + K+ + + D S +
Sbjct: 568 VPCEVTPVTLAFEYCRREKAVVAVSILDRLDKRRKNHTVNVLVRKLSAIGHVEDASLFLK 627
Query: 323 LIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
+ AV L Y + I+S + A ++ +KI
Sbjct: 628 KALDVDLAVDRLAYTSFINSCYANKKYALATEISEKI 664
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/369 (24%), Positives = 151/369 (40%), Gaps = 50/369 (13%)
Query: 97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV-KE 155
I+ R K+ EA K F + +Q G TY ++++ LGK + + L K
Sbjct: 294 IMVDRLCKARKLEEAYKIF---ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKM 350
Query: 156 IDELSNG----YVSLA--------------AMSTVMRRL---DTRAMSVLMDTLVKRNSV 194
+D N Y SL ++RR D ++ MD + K V
Sbjct: 351 LDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEV 410
Query: 195 AHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
+F + L + + +LIHG K ++ M Q GF+ D +Y
Sbjct: 411 EKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAV 470
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
++ +C+ K L+EM+EK +P+V T ++ L K ++ EA ++E+ KS
Sbjct: 471 VDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGI 530
Query: 314 LTDTSFYSSLIFILSKAVR----FLIYNTMIS--------------SACVRSEEGN-ALK 354
+ YSSLI K R +LI M+ A V++EE N AL
Sbjct: 531 ELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALV 590
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
Q ++E C P+ T++ + C ++ + ++M +G+VP T+ +
Sbjct: 591 CFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFV---FWQDMQKQGLVPNVVTYTTMIS 647
Query: 415 ELEKKSLGN 423
L K +GN
Sbjct: 648 GLAK--VGN 654
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 115/266 (43%), Gaps = 54/266 (20%)
Query: 120 AKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTR 179
A Q G+ YNA+V+ KS K +E+++E+ E V + T
Sbjct: 454 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKE-----------KCVQPTVAT- 501
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
++D L K + + AY +F + K I L+ ++ LI G+ K + D A ++EM
Sbjct: 502 -YGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEM 560
Query: 239 FQHGFSPD-----------------------------------GVSYTCFIEHYCREKDF 263
+ G +P+ +Y+ I CR + +
Sbjct: 561 MKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKY 620
Query: 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
K ++MQ++G P+V+T T ++ L K I +A ++E+ K++ + D + +++L
Sbjct: 621 NKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNAL 680
Query: 324 IFILSKAVRFL-IYNTMI----SSAC 344
I +S A R + Y T + SS+C
Sbjct: 681 IEGMSNANRAMEAYQTTVYQLSSSSC 706
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/310 (20%), Positives = 131/310 (42%), Gaps = 36/310 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
YN M+ G + +F ++L++ + E + +V+ + + ++ L K+
Sbjct: 187 AYNTMIMGYGSAGRFEDAYKLLERLRER-------GCIPSVV------SFNSILTCLGKK 233
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
V A +F K +S ++++I C + + A + + EM P+ ++
Sbjct: 234 RKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVN 293
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
++ C+ + + + ++GC P +T ++ L K Q+ EA +++EKM
Sbjct: 294 IMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDA 353
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+ Y+SLI F I+ R E+G+ K+ +++ CKPD
Sbjct: 354 GHNANPVVYTSLI------RNFFIHG--------RKEDGH--KVFKELIRRGCKPDLTLL 397
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431
+ ++ G ++ +R S G +P ++ +L L K G A+E +
Sbjct: 398 NTYMDCVFKAGEVEKGRMIFEDIR---SYGFLPDVRSYSILIHGLTKA--GQARETSN-- 450
Query: 432 LTHATEQRTF 441
+ HA +Q+ F
Sbjct: 451 IFHAMKQQGF 460
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 121/296 (40%), Gaps = 71/296 (23%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRLDTRAMSVLMDTLVK 190
Y ++ AL ++++ EL++++ E+ GY V + +T++R L +
Sbjct: 47 AYTVLIGALAEARRPERALELLRQMQEV--GYEVGVHLFTTLVR------------ALAR 92
Query: 191 RNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
VA A + + K C+ +++V I + K D A K E+ G PD VS
Sbjct: 93 EGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVS 152
Query: 250 YTCFIEHYCR-------EKDFRKVD---------------------------YTLKE-MQ 274
YT I C+ E+ F +++ Y L E ++
Sbjct: 153 YTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLR 212
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
E+GC PSV++ ++ L K +++ EAL ++E MK D ++S Y+ +I +L R
Sbjct: 213 ERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK-DAEPNSSTYNIIIDMLCLGGRVE 271
Query: 333 -----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
L N M+ C + A K+ + + C PDC T+
Sbjct: 272 EAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTY 327
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 107/285 (37%), Gaps = 64/285 (22%)
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
L +Q L + R+ D A A+ M + F P +YT I + +
Sbjct: 7 GLPNQACADLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALE 66
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD-------------DCLT 315
L++MQE G + V T ++ AL + Q+ +AL + +++K DC
Sbjct: 67 LLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFG 126
Query: 316 ----------------------DTSFYSSLIFILSKAVRF-------------------L 334
D Y+S+I++L KA R
Sbjct: 127 KAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAY 186
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YNTMI +A KL +++ E C P + S+ C KKR D L L
Sbjct: 187 AYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSF-NSILTCLGKKRKVDEALSL--- 242
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKE---RIDELLTHAT 436
E++ K P ST+ ++ + L LG E RI + + HA+
Sbjct: 243 FEVMKKDAEPNSSTYNIIIDML---CLGGRVEEAYRILDEMEHAS 284
>gi|356547448|ref|XP_003542124.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
mitochondrial-like [Glycine max]
Length = 445
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 144/331 (43%), Gaps = 50/331 (15%)
Query: 117 FTWAK-TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE-------------LSNG 162
F W + + + + H+ +T+N M++ LGK +F L W+L++ ++ +
Sbjct: 55 FNWVEESHSQFHHSTDTFNLMLDILGKFFEFKLCWDLIRRMNAHPSSPPNHATFRLMFKR 114
Query: 163 YVSLAAMSTVM---RRL------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS-- 211
YVS +++ + RL D + S L+D L + V A + + ++LS
Sbjct: 115 YVSAHSVNDAIDTFNRLGEFNLKDHTSFSNLLDALCEYKHVLEAQDLLFGNDNRVTLSVD 174
Query: 212 ----SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
++I ++++ GW K + +EM + G D SY+ +++ C+ K
Sbjct: 175 PIGNTKIHNMVLRGWFKLGWWSKCNEFWEEMDKKGVHKDLHSYSIYMDILCKGGKPWKAV 234
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
KE+++KG K V+ IV+ A+ + + +++V+ +MK Y++LI +L
Sbjct: 235 KLFKEIKKKGFKLDVVVYNIVIRAIGLSHGVDFSIRVFREMKELGIKPTVVTYNTLIRLL 294
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
C R +E AL LR + D C P ++ C M+
Sbjct: 295 CD--------------CYRHKEALAL-LRTIMPSDGCHPTAVSYH------CFFASMEKP 333
Query: 388 MLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
+L + EM+ G+ P T+ ML + +
Sbjct: 334 KQILAMFDEMVESGVRPTMDTYVMLLNKFGR 364
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 5/152 (3%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQK 233
+LD ++++ + + V + +VF + K+ I + ++ LI C + A
Sbjct: 246 KLDVVVYNIVIRAIGLSHGVDFSIRVFREMKELGIKPTVVTYNTLIRLLCDCYRHKEALA 305
Query: 234 AMKE-MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
++ M G P VSY CF + K ++ EM E G +P++ T ++++
Sbjct: 306 LLRTIMPSDGCHPTAVSYHCFFASMEKPK---QILAMFDEMVESGVRPTMDTYVMLLNKF 362
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ + V+ KMK C D + Y++LI
Sbjct: 363 GRWGFLRPVFMVWNKMKQLGCSPDAAAYNALI 394
>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 418
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 128/310 (41%), Gaps = 36/310 (11%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W +E L GY + ++LM + VK
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWGFYEE--SLECGYPA-----------SLYFFNILMHSFVK 148
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A VF K + S F+ L++G+ K D + M G PD +
Sbjct: 149 EGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYT 208
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+ I C+E + EM + G P+ +T T ++ K ++ A+++Y++M
Sbjct: 209 YSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 268
Query: 310 SDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEG 350
S D Y++LI+ L K + Y T+I +C
Sbjct: 269 SQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLE 328
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A + R+++ +++ + D + + C + R D ++REMLS G+ P+ T+
Sbjct: 329 TAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLKPEIGTYT 385
Query: 411 MLAEELEKKS 420
M+ E KK
Sbjct: 386 MIINEFCKKG 395
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 127/324 (39%), Gaps = 46/324 (14%)
Query: 112 LKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM---------WEL---VKE 155
LK F W + GY + +N ++ + K + L W L V
Sbjct: 114 LKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVS 173
Query: 156 IDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205
+ L NGY+ L AM + D SVL++ L K + + A ++F +
Sbjct: 174 FNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEML 233
Query: 206 DCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
D + + + F LI G CK + D A + K+M SPD ++Y I C++ D +
Sbjct: 234 DNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLK 293
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ EM KG KP IT T ++ K + A + ++M ++ D Y++L
Sbjct: 294 QAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTAL- 352
Query: 325 FILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
IS C +A K+ +++ KP+ T+ + C K +
Sbjct: 353 ---------------ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397
Query: 385 KDGMLVLNLMREMLSKGIVPQEST 408
G L++EM G P T
Sbjct: 398 WTGS---KLLKEMQRDGYAPSVVT 418
>gi|125544731|gb|EAY90870.1| hypothetical protein OsI_12477 [Oryza sativa Indica Group]
Length = 601
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 103/234 (44%), Gaps = 20/234 (8%)
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
K VA A ++ + + + LS + + L++GWC+ K D A+ + M +PD V
Sbjct: 172 AKTGHVAVAEQLVEELQPRLPLSLRHYTALLYGWCRMGKLDEAKHVLARMKAAEVAPDVV 231
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+ + + + F +EM+ +GC P+ ++ T +M L ++ EA++V+ +M
Sbjct: 232 VFNTLLAGFVADGRFEDAFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEM 291
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRF---LIYNTMISSACVRSEEG--------------- 350
+ C D+ Y +L+ KA R + +++ +R + G
Sbjct: 292 RRKGCAPDSVTYGTLVTAFCKAGRISQGYEFLDVMAREGLRVDAGVYLGFFVAHEKKEQL 351
Query: 351 -NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR-EMLSKGI 402
L+L +++ E C PD + +++ C K + + N M LS G+
Sbjct: 352 EECLELMERMRECRCPPDLSIYNVVIRLACKLGETKQAVALWNEMETNELSPGV 405
>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 418
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 130/314 (41%), Gaps = 44/314 (14%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W +E L GY + ++LM + VK
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWGFYEE--SLECGYPA-----------SLYFFNILMHSFVK 148
Query: 191 RNSVAHAYKVFLKFKDCI---SLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+ A VF D I SL + F+ L++G+ K D + M G P
Sbjct: 149 EGEIRLAQSVF----DAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQP 204
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D +Y+ I C+E + EM + G P+ +T T ++ K ++ A+++Y
Sbjct: 205 DVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIY 264
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVR 346
++M S D Y++LI+ L K + Y T+I C
Sbjct: 265 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKE 324
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
+ A + R+++ +++ + D + + C + R D ++REMLS G+ P+
Sbjct: 325 GDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLKPEI 381
Query: 407 STHKMLAEELEKKS 420
T+ M+ E KK
Sbjct: 382 GTYTMIINEFCKKG 395
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 90/388 (23%), Positives = 155/388 (39%), Gaps = 60/388 (15%)
Query: 51 TQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVE 110
TQ D + +++ES L + I + L+++H+ R + + KV+E
Sbjct: 61 TQRSDIYVFSGLITAYLESGFLRDA--IECYRLTKEHK---------FRVPFDTCRKVLE 109
Query: 111 ---ALKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM---------WEL-- 152
LK F W + GY + +N ++ + K + L W L
Sbjct: 110 HLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRP 169
Query: 153 -VKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF 201
V + L NGY+ L AM + D SVL++ L K + + A ++F
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELF 229
Query: 202 LKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
+ D + + + F LI G CK + D A + K+M SPD ++Y I C++
Sbjct: 230 DEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 289
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
D ++ + EM KG KP IT T ++ K + A + ++M ++ D Y
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
++L IS C +A K+ +++ KP+ T+ + C
Sbjct: 350 TAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQEST 408
K + G L++EM G +P T
Sbjct: 394 KGDVWTGS---KLLKEMQRDGYMPSVVT 418
>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 135/307 (43%), Gaps = 46/307 (14%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELS------------NGY-----VSLAAMSTVMRR 175
+N ++ A+ K KK+ ++ L K+++ L N + VSLA +S + +
Sbjct: 88 FNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLA-LSVLGKM 146
Query: 176 L------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRK 227
L D + L++ +RN V+ A + K + I I ++ +I CKTR+
Sbjct: 147 LKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE-IGYRPDIVAYNAIIDSLCKTRR 205
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
+ A KE+ + G P+ V+YT + C + L++M ++ P+VIT +
Sbjct: 206 VNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSA 265
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRS 347
++ A K ++ EA +++E+M D YSSL I+ C+
Sbjct: 266 LLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSL----------------INGLCLHD 309
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
A ++ + C PD ++ + C KR++DGM L R+M +G+V
Sbjct: 310 RIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGM---KLFRKMSQRGLVNNTV 366
Query: 408 THKMLAE 414
T+ L +
Sbjct: 367 TYNTLIQ 373
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 76/362 (20%), Positives = 137/362 (37%), Gaps = 90/362 (24%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAM 169
+ GY YNA++++L K+++ + KEI L NG +
Sbjct: 182 VEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRW 241
Query: 170 STVMRRL----------DTRAMSVLMDTLVKRNSVAHAYKVF------------------ 201
+ R L + S L+D VK V A ++F
Sbjct: 242 NDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSL 301
Query: 202 ---LKFKDCISLSSQIFDV---------------LIHGWCKTRKSDYAQKAMKEMFQHGF 243
L D I ++Q+FD+ LI+G+CK ++ + K ++M Q G
Sbjct: 302 INGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGL 361
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+ V+Y I+ + + D K +M G P + T I++ L + +AL
Sbjct: 362 VNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALV 421
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSAC 344
++E M+ + D Y+++I + K + + Y TM+S C
Sbjct: 422 IFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLC 481
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN--LMREMLSKGI 402
+ L+ ++E K E ++ M C + DG + ++ L+++MLS G
Sbjct: 482 TKG-------LQHEVEALYTKMKQEGLMKNDSMLC----LGDGDITISAELIKKMLSCGY 530
Query: 403 VP 404
P
Sbjct: 531 AP 532
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 93/238 (39%), Gaps = 27/238 (11%)
Query: 224 KTRKSDY----AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
KTR D A +EM + P V + + + K + V K+M+ G +
Sbjct: 58 KTRLRDIKLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIR 117
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKM----KSDDCLTDTSFYSSL---------IFI 326
+ T IV++ Q+ AL V KM D +T S + + +
Sbjct: 118 NDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 177
Query: 327 LSKAVR------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
+ K V + YN +I S C +AL ++I +P+ T+ + C+
Sbjct: 178 VDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCN 237
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATE 437
R D L+R+M+ + I P T+ L + K + AKE +E++ + +
Sbjct: 238 SGRWNDAA---RLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSID 292
>gi|414590862|tpg|DAA41433.1| TPA: hypothetical protein ZEAMMB73_769800 [Zea mays]
Length = 1295
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 128/300 (42%), Gaps = 37/300 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
GY+ +Y+ +V+ L K +L GY L M+ + + S L
Sbjct: 967 GYVPDVHSYSILVDGLCKQG-------------DLLKGYDMLEEMARNGICPNQVSYSSL 1013
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+ L K VA A K+F +D QI + +++HG C+ +M H
Sbjct: 1014 LHGLCKTGQVALALKIFKNLQDHGFEHDQINYSIILHGCCQHLDLKAISDLWFDMIHHNI 1073
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+PD +YT I CR ++ + + M E G P+++TCTI++ + K + EA
Sbjct: 1074 APDVYNYTSLIYALCRHRNLQDALGVFELMLENGLSPNIVTCTILVDSFSKQGLVGEAFL 1133
Query: 304 VYEKMKSD--------------DCLTDTSFYSSLIFILSKAVR------FLIYNTMISSA 343
++M + L T+ YS + + + ++ ++Y+ +I
Sbjct: 1134 FLDRMHQSLGIVPNLCMYRVMINGLCKTNKYSGVWNVFADMIKRGYVPDVVLYSIIIEGF 1193
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
+ AL+L K+ ++ KP+ T++ + C+ R+ + M L+R+M+ + ++
Sbjct: 1194 VKALKLQEALRLYHKMLDEGVKPNIFTYSSLINGLCNDDRLPEAM---GLIRDMIGEDLL 1250
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 92/212 (43%), Gaps = 21/212 (9%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
S+ F+ +IHG+C + D A + M + G+ PD SY+ ++ C++ D K L
Sbjct: 936 SNYCFNAVIHGFCCEGQVDKAIEVFHGMKKCGYVPDVHSYSILVDGLCKQGDLLKGYDML 995
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
+EM G P+ ++ + ++H L K Q+ ALK+++ ++ D YS
Sbjct: 996 EEMARNGICPNQVSYSSLLHGLCKTGQVALALKIFKNLQDHGFEHDQINYS--------- 1046
Query: 331 VRFLIYNTMISSACVRSEEGNALK-LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+I C + + A+ L + + PD + + C + ++D +
Sbjct: 1047 --------IILHGCCQHLDLKAISDLWFDMIHHNIAPDVYNYTSLIYALCRHRNLQDALG 1098
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
V L ML G+ P T +L + K+ L
Sbjct: 1099 VFEL---MLENGLSPNIVTCTILVDSFSKQGL 1127
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMF 239
++L+D+ K+ V A+ + + + + + V+I+G CKT K +M
Sbjct: 1116 TILVDSFSKQGLVGEAFLFLDRMHQSLGIVPNLCMYRVMINGLCKTNKYSGVWNVFADMI 1175
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ G+ PD V Y+ IE + + ++ +M ++G KP++ T + +++ L ++
Sbjct: 1176 KRGYVPDVVLYSIIIEGFVKALKLQEALRLYHKMLDEGVKPNIFTYSSLINGLCNDDRLP 1235
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLI 324
EA+ + M +D L D Y+S+I
Sbjct: 1236 EAMGLIRDMIGEDLLLDNVLYTSII 1260
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 19/155 (12%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
Y M+ L K+ K+ +W + D + GYV D S++++ VK
Sbjct: 1151 YRVMINGLCKTNKYSGVWNVFA--DMIKRGYVP-----------DVVLYSIIIEGFVKAL 1197
Query: 193 SVAHAYKVFLKFKDCISLSSQIFDV--LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A +++ K D + IF LI+G C + A +++M D V Y
Sbjct: 1198 KLQEALRLYHKMLD-EGVKPNIFTYSSLINGLCNDDRLPEAMGLIRDMIGEDLLLDNVLY 1256
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
T I YCR + + ++ Q G K V C
Sbjct: 1257 TSIIACYCRRLNMKA---AMEMAQRDGKKRCVARC 1288
>gi|242075674|ref|XP_002447773.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
gi|241938956|gb|EES12101.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
Length = 380
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 19/190 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ ++HG+CK + A++ + M Q G +PD +SY+ I+ CR +F KV+ L E +
Sbjct: 187 YTAILHGYCKQGRVLEAERLVDTMIQVGCAPDVISYSVLIQGLCRVGEFGKVERILGESE 246
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD-------------DCLTDTSFYS 321
KG P+ +T I M AL + + EA + + M S DCL S +S
Sbjct: 247 AKGWTPNAVTYNIYMSALCRMGFLDEAFRQVDVMLSRGVSMTIETVNILFDCLCRDSMFS 306
Query: 322 SLIFILSKA------VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ +L + V YNT++S C + LKL + + PD + ++
Sbjct: 307 EAVSLLEYSEELNWNVDVFCYNTLMSRLCDAGDFARVLKLLVDLVKKGIGPDMFSFTIAI 366
Query: 376 KMCCHKKRMK 385
+ C + K
Sbjct: 367 RSLCRAGKFK 376
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 107/293 (36%), Gaps = 35/293 (11%)
Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL 188
TP YNA++ A ++ + DE+ + SL T + L+ +L
Sbjct: 47 TPTAYNALMSAYSRAGRH----------DEVLRLFRSLPFSPT------APLFTTLISSL 90
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
S + A F + ++ F L+ + M G +PD
Sbjct: 91 AASGSKSAALDAFSLLASGLGPTTSAFTALLKSIDAAPSESVYRAFFGTMAAMGCAPDAA 150
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+Y C I C + + L M E+G P+V + T ++H K ++ EA ++ + M
Sbjct: 151 TYNCLIWMLCDSQRLDEAWGVLDSMLEEGICPTVRSYTAILHGYCKQGRVLEAERLVDTM 210
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
C D + Y+ +I C E G ++ + E P+
Sbjct: 211 IQVGCAPDV----------------ISYSVLIQGLCRVGEFGKVERILGESEAKGWTPNA 254
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
T+ + C + + +++ MLS+G+ T +L + L + S+
Sbjct: 255 VTYNIYMSALCRMGFLDEAFRQVDV---MLSRGVSMTIETVNILFDCLCRDSM 304
>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/366 (22%), Positives = 146/366 (39%), Gaps = 83/366 (22%)
Query: 108 VVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLA 167
V EAL+ + + G + NA++ L K F +MWEL N VS
Sbjct: 135 VDEALRVYL------KVGAFPAVQACNALLNGLLKKSSFDIMWELY-------NNMVSRR 181
Query: 168 AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTR 226
TV+ +VL+D ++ V A + + K I + I+ LIHG C
Sbjct: 182 LFPTVV------TYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSES 235
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
K A+ ++M G P+ +Y ++ YC+ + ++ + + M + G +P+V+T
Sbjct: 236 KLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFG 295
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV-------------RF 333
I++ AL K +++ A + + +M + + ++SLI SKA +F
Sbjct: 296 ILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKF 355
Query: 334 LI------YNTMISSACVRS--------------------------------EEGN---- 351
I Y+ +I +AC +EGN
Sbjct: 356 KISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKA 415
Query: 352 -----ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
A K + + +PD +A L+ + K M D M+ L +M+ GIVP E
Sbjct: 416 LEIFKATKFFSDMRRNGLRPDALAYAVMLQGHLNAKHMADVMM---LHADMIKMGIVPNE 472
Query: 407 STHKML 412
T +++
Sbjct: 473 VTSQVV 478
>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05670, mitochondrial; Flags: Precursor
gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
Length = 741
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 45/293 (15%)
Query: 158 ELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC 207
EL NGY M R + + L+D L K + A ++ +
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK- 484
Query: 208 ISLSSQIF--DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
I L IF + +++G CK+ + A K + E G + D V+YT ++ YC+ + K
Sbjct: 485 IGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDK 544
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
LKEM KG +P+++T ++M+ ++ L+ EK+ L +
Sbjct: 545 AQEILKEMLGKGLQPTIVTFNVLMNGF----CLHGMLEDGEKL--------------LNW 586
Query: 326 ILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK----PDCETHARSLKMCC 379
+L+K + +N+++ C+R N LK I +D C PD +T+ +K C
Sbjct: 587 MLAKGIAPNATTFNSLVKQYCIR----NNLKAATAIYKDMCSRGVGPDGKTYENLVKGHC 642
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE-LEKKSLGNAKERIDEL 431
+ MK+ L +EM KG ST+ +L + L++K A+E D++
Sbjct: 643 KARNMKEAWF---LFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQM 692
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 19/204 (9%)
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
S F LI+G+CK A + M Q G SP+ V+YT I+ C+E D + L
Sbjct: 421 SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 480
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
EM + G +P++ T +++ L K+ I EA+K+ + ++ DT
Sbjct: 481 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT-------------- 526
Query: 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+ Y T++ + C E A ++ +++ +P T + C ++DG +L
Sbjct: 527 --VTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL 584
Query: 392 NLMREMLSKGIVPQESTHKMLAEE 415
N ML+KGI P +T L ++
Sbjct: 585 NW---MLAKGIAPNATTFNSLVKQ 605
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 87/218 (39%), Gaps = 22/218 (10%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ LI G+CK A K EM +PD ++YT I +C+ D + EM
Sbjct: 353 VYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM 412
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK---- 329
KG +P +T T +++ KA + +A +V+ M C + Y++LI L K
Sbjct: 413 FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL 472
Query: 330 ---------------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
YN++++ C A+KL + E D T+
Sbjct: 473 DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 532
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C M +L +EML KG+ P T +L
Sbjct: 533 MDAYCKSGEMDKAQEIL---KEMLGKGLQPTIVTFNVL 567
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 116/270 (42%), Gaps = 28/270 (10%)
Query: 195 AHAYKVFLKFKD---CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
A A VF +F + C +++S ++++IH C+ + A + M G++PD +SY+
Sbjct: 228 ATAIIVFREFPEVGVCWNVAS--YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYS 285
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ YCR + KV ++ M+ KG KP+ ++ L + ++ EA + + +M
Sbjct: 286 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 345
Query: 312 DCLTDTSFYSSLIFILSK------AVRF-------------LIYNTMISSACVRSEEGNA 352
L DT Y++LI K A +F L Y +IS C + A
Sbjct: 346 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 405
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
KL ++ +PD T + C MKD V N M+ G P T+ L
Sbjct: 406 GKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHN---HMIQAGCSPNVVTYTTL 462
Query: 413 AEELEKKS-LGNAKERIDELLTHATEQRTF 441
+ L K+ L +A E + E+ + F
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIF 492
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN++V L KS G + E VK + E A ++ DT + LMD K
Sbjct: 493 TYNSIVNGLCKS---GNIEEAVKLVGEFEA-----AGLNA-----DTVTYTTLMDAYCKS 539
Query: 192 NSVAHAYKVFLKFKDCISLSSQ----IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+ A ++ K+ + Q F+VL++G+C + +K + M G +P+
Sbjct: 540 GEMDKAQEIL---KEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNA 596
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
++ ++ YC + + K+M +G P T ++ KA+ + EA ++++
Sbjct: 597 TTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE 656
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFL 334
MK S YS LI K +FL
Sbjct: 657 MKGKGFSVSVSTYSVLIKGFLKRKKFL 683
>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
herrerae]
Length = 395
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 126/310 (40%), Gaps = 46/310 (14%)
Query: 136 MVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRL----DTRAMSVLMD---- 186
++E L K K F L+W KEI L GY SL + +M R D R + D
Sbjct: 94 VLEHLMKLKYFKLVWGFYKEI--LECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITK 151
Query: 187 -----TLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDY 230
++V N++ + Y + L + + + VLI+G CK K D
Sbjct: 152 WGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDD 211
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A + EM G P+GV++T I+ +C+ K+M + P +IT + +
Sbjct: 212 ANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTY 271
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEG 350
L K + +A + ++M D + Y T+I C +
Sbjct: 272 GLCKKGDLKQAHDLIDEMSMKGLKPDK----------------ITYTTLIDGCCKEGDME 315
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A + ++++ +++ + D + + C + R D ++REMLS G+ P T+
Sbjct: 316 TAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAE---KMLREMLSVGLKPNXGTYT 372
Query: 411 MLAEELEKKS 420
M+ E KK
Sbjct: 373 MIINEFCKKG 382
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 109/262 (41%), Gaps = 28/262 (10%)
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L + R + D SVL++ L K + +
Sbjct: 151 KWGLRPSVV-SFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKM 209
Query: 195 AHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A ++F + D + + F LI G CK + D A + K+M SPD ++Y
Sbjct: 210 DDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 269
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
C++ D ++ + EM KG KP IT T ++ K + A + ++M ++
Sbjct: 270 TYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENI 329
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
D ++Y +IS C +A K+ +++ KP+ T+
Sbjct: 330 RLDD----------------VVYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXGTYTM 373
Query: 374 SLKMCCHKKRMKDGMLVLNLMR 395
+ C K + G +L M+
Sbjct: 374 IINEFCKKGDVWTGSKLLKEMQ 395
>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
Length = 603
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 131/310 (42%), Gaps = 40/310 (12%)
Query: 128 HTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
H P+ TYN +++ L KS + L E++ L T RR + + ++
Sbjct: 111 HVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLG---------CTPNRR----SHNTII 157
Query: 186 DTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L +++ + A +VF ++ +D I S + +LI G K K + A K + M G
Sbjct: 158 LGLCQQSKIDQACQVFHEMEARD-IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGI 216
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+P V+Y I C + K M+ KGC+PS T I++ A K ++ EA +
Sbjct: 217 TPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFR 276
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS 363
+ ++M D + D + Y+T+IS C + +A L + + +
Sbjct: 277 LLKRMTDDGHVPDV----------------VTYSTLISGLCSIARVDDARHLLEDMVKRQ 320
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGN 423
CKP T + C R+K+ VL+ M+S G P T+ L +
Sbjct: 321 CKPTVVTQNTLIHGLCKAGRIKEAREVLD---AMVSSGQSPDVVTYNTL---VHGHCRAG 374
Query: 424 AKERIDELLT 433
ER ELL+
Sbjct: 375 QTERARELLS 384
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/335 (22%), Positives = 146/335 (43%), Gaps = 55/335 (16%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVS--------LAAMSTVMRRLDTRAMSV 183
T+N +++A K K + L+K + + +G+V ++ + ++ R D R
Sbjct: 257 TFNILIDAHCKRGKMDEAFRLLKRMTD--DGHVPDVVTYSTLISGLCSIARVDDARH--- 311
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L++ +VKR ++ +Q + LIHG CK + A++ + M G
Sbjct: 312 LLEDMVKRQCKP-------------TVVTQ--NTLIHGLCKAGRIKEAREVLDAMVSSGQ 356
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
SPD V+Y + +CR + L +M +G P+V+T T ++ L KA ++ EA
Sbjct: 357 SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACG 416
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSAC 344
V+ +MKS C + Y++LI A + ++Y T+ + C
Sbjct: 417 VFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELC 476
Query: 345 VRSEEGNALKLRQKIEEDSCKPDC---ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
AL++ ++ E S + + E + ++ +M+ + L +R+M+ G
Sbjct: 477 KSGRSARALEILREGRE-SLRSEAWGDEVYRFAVDGLLDAGKME---MALGFVRDMVRGG 532
Query: 402 IVPQ-ESTHKMLAEELEKKSLGNAKERIDELLTHA 435
+P E ++A + G A+ ++E++ A
Sbjct: 533 QLPAPERCASLVAGLCKSGQGGEARAVLEEIMDLA 567
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 88/213 (41%), Gaps = 19/213 (8%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+S S + +LI G K K + A+ +++ G +P V+YT I C F
Sbjct: 6 VSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 65
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+M +GC PS +T +++ A K + EA + +KM D + D
Sbjct: 66 ELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDV---------- 115
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+ YNT++ C AL L ++E C P+ +H + C + ++
Sbjct: 116 ------VTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQA 169
Query: 388 MLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
V + EM ++ I P ++ +L + L K
Sbjct: 170 CQVFH---EMEARDIPPDSWSYGILIDGLAKAG 199
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 19/183 (10%)
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M + SPD SY I+ + +++ G PS + T ++H L A
Sbjct: 1 MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
+A +++ M C + YN +I ++C R A L +
Sbjct: 61 FDDARELFADMNRRGCPPSP----------------VTYNVIIDASCKRGMLEEACDLIK 104
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
K+ ED PD T+ + C R+++ +L+ N EM G P +H + L
Sbjct: 105 KMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFN---EMERLGCTPNRRSHNTIILGLC 161
Query: 418 KKS 420
++S
Sbjct: 162 QQS 164
>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Vitis vinifera]
Length = 539
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 138/339 (40%), Gaps = 48/339 (14%)
Query: 126 YMHTPET---YNAMVEALGKSKKFGLMWELVKEIDELS------------NGYVSLA--- 167
+MH P + ++ ++ K K + + L K++D N + L
Sbjct: 49 HMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVD 108
Query: 168 -AMSTVMRRL------DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLI 219
A+S + + L DT + L+ L + A VF K + + + L+
Sbjct: 109 FALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLM 168
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
+G CK R+ A EM G SPD +Y I C +++ V L EM +
Sbjct: 169 NGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIM 228
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL-------------IFI 326
P+V++ IV+ AL K ++ EA V + M D Y++L + +
Sbjct: 229 PNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKV 288
Query: 327 LSKAVR------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
VR + YNT+I+ C A+ L +++ P+ T++ + CH
Sbjct: 289 FDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCH 348
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
R++D + + N EM++ G +P T+ +L + L K
Sbjct: 349 VGRLQDAIALFN---EMVACGQIPNLVTYSILLDYLCKN 384
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 118/279 (42%), Gaps = 37/279 (13%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + LMD R+ + A KVF + ++ + ++ LI+G+CK ++ D A
Sbjct: 265 DVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLF 324
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM + P+ ++Y+ I C + EM G P+++T +I++ L K
Sbjct: 325 EEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKN 384
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-----AVRFLI--------------Y 336
++ EA+ + + ++ + D Y+ I + + A R L +
Sbjct: 385 HRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTH 444
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML------- 389
N MI C R A KL ++++E+ C L+ C + G+L
Sbjct: 445 NIMIRGLCKRGLLDEASKLFREMDENGC----------LRNGCTYNTITQGLLQNNKTSR 494
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
+ L+ EML++G ST +L + L L + ++I
Sbjct: 495 AIQLLEEMLARGFSADVSTTALLVKMLSDDGLDQSVKQI 533
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 19/188 (10%)
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A + M P + + + K + V K+M G P V T TIV
Sbjct: 38 DDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIV 97
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
+++ ++ AL V K+ DT+ ++ T++ CV +
Sbjct: 98 INSFCHLNRVDFALSVLAKILKLGHQPDTATFT----------------TLVRGLCVVGK 141
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
G AL + K+ + +P+ T+ + C +++ + LNL EM++KGI P T
Sbjct: 142 IGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEA---LNLFSEMIAKGISPDIFT 198
Query: 409 HKMLAEEL 416
+ L L
Sbjct: 199 YNSLIHAL 206
>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Vitis vinifera]
Length = 641
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 121/313 (38%), Gaps = 61/313 (19%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQK 233
D+ + ++L+ L + V A+++F + + S + ++ LI+G+C+ + D
Sbjct: 235 FDSCSFNILIRGLCRIGKVDKAFELFNEMRG-FGCSPDVITYNTLINGFCRVNEVDRGHD 293
Query: 234 AMKEMF-QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+KE+ ++ SPD V+YT I YC+ K M G KP+ T I+++
Sbjct: 294 LLKELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGF 353
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------------------------- 324
K + A +YE+M C D ++SLI
Sbjct: 354 GKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNE 413
Query: 325 ---FILSKAV----------RFL-------------IYNTMISSACVRSEEGNALKLRQK 358
IL+ A+ FL +YN +I C A + +
Sbjct: 414 YTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAE 473
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
+EE CKPD T+ + C K R+ + + + N ML G P T L L K
Sbjct: 474 MEEKRCKPDKITYTILIIGHCMKGRLSEAISIFN---RMLGTGCAPDSITMTSLISCLLK 530
Query: 419 KSLGNAKERIDEL 431
+ N RI ++
Sbjct: 531 AGMPNEAYRIMQI 543
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 3/133 (2%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF--DVLIHGWCKTRKSDYAQKAMKEM 238
++L + L K N + H + FL+ + +Q F + +I G+CK D A + EM
Sbjct: 416 FAILTNALCKENRL-HEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEM 474
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
+ PD ++YT I +C + + M GC P IT T ++ L KA
Sbjct: 475 EEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLKAGMP 534
Query: 299 YEALKVYEKMKSD 311
EA ++ + D
Sbjct: 535 NEAYRIMQIASED 547
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 105/260 (40%), Gaps = 29/260 (11%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE-MFQHG 242
++ LV + A + + + D + S +++ L++ + + D A +E M HG
Sbjct: 174 VLGFLVSSATDAGKFNIARTWVDGVEFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHG 233
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI---Y 299
D S+ I CR K EM+ GC P VIT +++ + ++ +
Sbjct: 234 -PFDSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGH 292
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----LIYNTMISSACVRS-------- 347
+ LK E + +D D Y+S+I K + +++N MISS +
Sbjct: 293 DLLK--ELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILI 350
Query: 348 ----EEGNALKLRQKIEED---SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+ G+ + EE C PD T + C +++ L L E+ ++
Sbjct: 351 NGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERS---LKLWHELNAR 407
Query: 401 GIVPQESTHKMLAEELEKKS 420
+ P E T +L L K++
Sbjct: 408 NLSPNEYTFAILTNALCKEN 427
>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 146/346 (42%), Gaps = 50/346 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI------------DELSNGYVSLAAMSTVMRRL--- 176
TYN ++++L K + E + E+ + + +G+ SL ++ R
Sbjct: 238 TYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEM 297
Query: 177 -------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKS 228
DT ++L+D L K V+ A V + ++ ++ L+ G+C +
Sbjct: 298 VGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQM 357
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A K + M G +P+ SY I YC+ K + L EM EK P +T + +
Sbjct: 358 DEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTL 417
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--FI----LSKAVRFL-------- 334
M L + + EAL ++++M S L D YS L+ F L +A++ L
Sbjct: 418 MQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRI 477
Query: 335 -----IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+Y +I + + A +L K+ D +PD T+ + K +K+G+
Sbjct: 478 KPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMI-----KGLLKEGLS 532
Query: 390 --VLNLMREMLSKGIVPQESTHKMLAEE-LEKKSLGNAKERIDELL 432
R+M G +P ++ ++ + L+ + A + IDE++
Sbjct: 533 DEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMV 578
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 19/219 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+VLI+ C+ D+A M +MF+ G PD +++ I C E ++ EM
Sbjct: 134 LNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMV 193
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
G +P+VI+ V++ L K A++V+ KM+ + +
Sbjct: 194 WSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQN----------------RGKPNVV 237
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YNT+I S C A++ ++ + PD T+ L C ++ + L
Sbjct: 238 TYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEAT---RLF 294
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
+EM+ + ++P T +L + L K+ + + + E +T
Sbjct: 295 KEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMT 333
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 22/221 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I+G CK + A + ++M Q+ P+ V+Y I+ C+++ + L EM
Sbjct: 204 YNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMV 263
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
++G P V+T ++H Q+ EA +++++M + + DT ++ L+ L K
Sbjct: 264 DRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVS 323
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
YN ++ C+ ++ A+K+ + C P+ ++ +
Sbjct: 324 EARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILI 383
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C KRM + L+ EM K + P T+ L + L
Sbjct: 384 NGYCKSKRMNEAK---RLLSEMSEKNLTPDTVTYSTLMQGL 421
>gi|222625312|gb|EEE59444.1| hypothetical protein OsJ_11623 [Oryza sativa Japonica Group]
Length = 589
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 103/234 (44%), Gaps = 20/234 (8%)
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
K VA A ++ + + + LS + + L++GWC+ K D A+ + M +PD V
Sbjct: 160 AKTGHVAVAEQLVEELQPRLPLSLRHYTALLYGWCRMGKLDEAKHVLARMKAAEVAPDVV 219
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+ + + + F +EM+ +GC P+ ++ T +M L ++ EA++V+ +M
Sbjct: 220 VFNTLLAGFVADGRFEDAFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEM 279
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRF---LIYNTMISSACVRSEEG--------------- 350
+ C D+ Y +L+ KA R + +++ +R + G
Sbjct: 280 RRKGCAPDSVTYGTLVTAFCKAGRISQGYEFLDVMAREGLRVDAGVYLGFFVAHEKKEQL 339
Query: 351 -NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR-EMLSKGI 402
L+L +++ E C PD + +++ C K + + N M LS G+
Sbjct: 340 EECLELMERMRECRCPPDLSIYNVVIRLACKLGETKQAVALWNEMETNELSPGV 393
>gi|326490553|dbj|BAJ84940.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 856
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 132/323 (40%), Gaps = 51/323 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELS--------NGYVSLAA 168
F W K Q G+ H TY M+ LG++K+FG M +L+ E+ ++ N +
Sbjct: 350 FHWLKRQPGFKHDGHTYTTMIGILGQAKQFGTMRKLLDEMSSVNCKPTVVTYNRIIHAYG 409
Query: 169 MSTVMR--------------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
+ +R + D L+D K + A ++ + ++ + LS
Sbjct: 410 RANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQE-VGLSPDT 468
Query: 215 F--DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
F +++ K + A K EM +G +P+ V+Y I + +++ V ++
Sbjct: 469 FTYSAMVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRD 528
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
MQ G +P IT +IVM L + EA V+ +M+ D D Y L+ + KA
Sbjct: 529 MQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMRR-DWAPDEPVYGLLVDLWGKA-- 585
Query: 333 FLIYNTMISSACVRSEEGN---ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
GN AL + +D +P+ T L R +D
Sbjct: 586 -----------------GNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKLNRFQDAYG 628
Query: 390 VLNLMREMLSKGIVPQESTHKML 412
VL + ML++G+VP T+ +L
Sbjct: 629 VL---QNMLAQGLVPSLQTYTLL 648
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 22/196 (11%)
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
Q GF DG +YT I + K F + L EM CKP+V+T ++HA +A +
Sbjct: 356 QPGFKHDGHTYTTMIGILGQAKQFGTMRKLLDEMSSVNCKPTVVTYNRIIHAYGRANYLR 415
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMI 340
EA+KV+E+M+ D Y +LI I +K+ Y+ M+
Sbjct: 416 EAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMV 475
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+ + A KL ++ ++ C P+ T+ + + + + V+ L R+M
Sbjct: 476 NCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDN---VVKLYRDMQIA 532
Query: 401 GIVPQESTHKMLAEEL 416
G P + T+ ++ E L
Sbjct: 533 GFRPDKITYSIVMEVL 548
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 72/182 (39%), Gaps = 26/182 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNG-------YVSLAAMSTVMR---------- 174
TY+AMV LGK + ++L E+ + NG Y + A+ R
Sbjct: 470 TYSAMVNCLGKGGQLAAAYKLFCEM--IDNGCTPNLVTYNIIIALQAKARNYDNVVKLYR 527
Query: 175 -------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRK 227
R D S++M+ L + A VFL+ + + ++ +L+ W K
Sbjct: 528 DMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMRRDWAPDEPVYGLLVDLWGKAGN 587
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
D A M Q G P+ + + + + F+ L+ M +G PS+ T T+
Sbjct: 588 VDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKLNRFQDAYGVLQNMLAQGLVPSLQTYTL 647
Query: 288 VM 289
++
Sbjct: 648 LL 649
>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 418
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 128/310 (41%), Gaps = 36/310 (11%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W +E L GY + ++LM + VK
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWGFYEE--NLECGYPA-----------SLYFFNILMHSFVK 148
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A VF K + S F+ L++G+ K + + M G PD +
Sbjct: 149 EGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYT 208
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+ I C+E + EM +KG P+ +T T ++ K ++ A+++Y++M
Sbjct: 209 YSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 268
Query: 310 SDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEG 350
S D Y++LI+ L K Y T+I C +
Sbjct: 269 SQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLE 328
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A + R+++ +++ + D + + C + R D ++REMLS G+ P+ T+
Sbjct: 329 TAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLKPEIGTYT 385
Query: 411 MLAEELEKKS 420
M+ E KK
Sbjct: 386 MIINEFCKKG 395
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 126/324 (38%), Gaps = 46/324 (14%)
Query: 112 LKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM---------WEL---VKE 155
LK F W + GY + +N ++ + K + L W L V
Sbjct: 114 LKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVS 173
Query: 156 IDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205
+ L NGY+ L ++ R + D SVL++ L K + + A +F +
Sbjct: 174 FNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEML 233
Query: 206 D-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
D + + F LI G CK + D A + K+M SPD ++Y I C++ D +
Sbjct: 234 DKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLK 293
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ + EM KG KP T T ++ K + A + ++M ++ D Y++L
Sbjct: 294 QAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTAL- 352
Query: 325 FILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
IS C +A K+ +++ KP+ T+ + C K +
Sbjct: 353 ---------------ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397
Query: 385 KDGMLVLNLMREMLSKGIVPQEST 408
G L++EM G P T
Sbjct: 398 WTGS---KLLKEMQRDGYKPSVVT 418
>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Glycine max]
Length = 511
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 118/273 (43%), Gaps = 33/273 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T+N +++AL K K + + LA M + D + L+D
Sbjct: 269 TFNILIDALSKEGK-------------MKEAKILLAVMMKACIKPDVFTYNSLIDGYFLV 315
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ V HA VF + ++ Q + +I+G CKT+ D A +EM PD V+Y
Sbjct: 316 DEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTY 375
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I+ C+ + K M+E+G +P V + TI++ L K+ ++ +A ++++++ +
Sbjct: 376 NSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLA 435
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ Y+ LI L KA F AL L+ K+E+ C PD T
Sbjct: 436 KGYHLNVHAYTVLINRLCKAGFF----------------DEALDLKSKMEDKGCMPDAVT 479
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
++ K +L REM+++G++
Sbjct: 480 FDIIIRALFEKDENDKAEKIL---REMIARGLL 509
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 113/282 (40%), Gaps = 32/282 (11%)
Query: 164 VSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV------ 217
++ + + +++R ++ ++TL+K K L F D L +Q F +
Sbjct: 110 LAFSVFANILKR-GFHPNAITLNTLIKGLCFRGEIKKALYFHD--QLVAQGFQLDQVSYG 166
Query: 218 -LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
LI+G CKT ++ + ++++ H PD V Y I C+ K EM K
Sbjct: 167 TLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVK 226
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--- 333
G P V+T T ++H + EA + +MK + + ++ LI LSK +
Sbjct: 227 GISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEA 286
Query: 334 ----------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
YN++I + E +A + + + PD + + +
Sbjct: 287 KILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMING 346
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
C K + + M +L EM K ++P T+ L + L K
Sbjct: 347 LCKTKMVDEAM---SLFEEMKHKNMIPDIVTYNSLIDGLCKN 385
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/284 (20%), Positives = 110/284 (38%), Gaps = 59/284 (20%)
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMK 236
+V ++ H + + K+ SL +++ F++LI K K A+ +
Sbjct: 232 VVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLA 291
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M + PD +Y I+ Y + + Y M ++G P V T +++ L K K
Sbjct: 292 VMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTK 351
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
+ EA+ ++E+MK + + D + YN++I C A+ L
Sbjct: 352 MVDEAMSLFEEMKHKNMIPD----------------IVTYNSLIDGLCKNHHLERAIALC 395
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDG--------------------MLV------ 390
++++E +PD ++ L C R++D +L+
Sbjct: 396 KRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKA 455
Query: 391 ------LNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
L+L +M KG +P T ++ L +K + E+I
Sbjct: 456 GFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKI 499
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/244 (19%), Positives = 97/244 (39%), Gaps = 22/244 (9%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
++ +LV +F +F+ + I+ +LI+ +C A + + G
Sbjct: 63 ILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRG 122
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
F P+ ++ I+ C + +K Y ++ +G + ++ +++ L K +
Sbjct: 123 FHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVA 182
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362
++ K++ D ++YNT+I+S C G+A + ++
Sbjct: 183 RLLRKLEGHSVKPDV----------------VMYNTIINSLCKNKLLGDACDVYSEMIVK 226
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLG 422
PD T+ + C +K+ +LN EM K I P T +L + L K+ G
Sbjct: 227 GISPDVVTYTTLIHGFCIMGHLKEAFSLLN---EMKLKNINPNVCTFNILIDALSKE--G 281
Query: 423 NAKE 426
KE
Sbjct: 282 KMKE 285
>gi|15241779|ref|NP_198189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|9502152|gb|AAF88005.1| similar to a large family of Arabidopsis thaliana salt inducible
protein-like proteins; contains similarity to Pfam
family PF01535 (Domain of unknown function),
score=340.5, E=1.9e-98, N=2 [Arabidopsis thaliana]
gi|332006410|gb|AED93793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 115/272 (42%), Gaps = 37/272 (13%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
+NA++ LG++ M +LV ++DE V R D + +L++TL K
Sbjct: 297 FNALLSCLGRNMDISRMNDLVLKMDE-------------VKIRPDVVTLGILINTLCKSR 343
Query: 193 SVAHAYKVFLKFK-------DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM-FQHGFS 244
V A +VF + + + I S F+ LI G CK + A++ + M +
Sbjct: 344 RVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCV 403
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P+ V+Y C I+ YCR + M+E KP+V+T ++ + + + A+
Sbjct: 404 PNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVF 463
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
+ M+ + + + Y T+I + C S A+ +K+ E C
Sbjct: 464 FMDMEKEGVKGNV----------------VTYMTLIHACCSVSNVEKAMYWYEKMLEAGC 507
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
PD + + + C +R D + V+ ++E
Sbjct: 508 SPDAKIYYALISGLCQVRRDHDAIRVVEKLKE 539
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 99/203 (48%), Gaps = 19/203 (9%)
Query: 197 AYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255
A +V K K+ SL +++LI +C ++ + + +M + G PD ++Y I
Sbjct: 530 AIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLIS 589
Query: 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315
+ + KDF V+ +++M+E G P+V T V+ A ++ EALK+++ M +
Sbjct: 590 FFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVN 649
Query: 316 DTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ +IYN +I++ G AL L+++++ +P+ ET+ +L
Sbjct: 650 PNT---------------VIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETY-NAL 693
Query: 376 KMCCHKKRMKDGMLVLNLMREML 398
C ++K G +L LM EM+
Sbjct: 694 FKCLNEK--TQGETLLKLMDEMV 714
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 117/272 (43%), Gaps = 58/272 (21%)
Query: 172 VMRRLDT-----RAMSVLMDTLVKRNSVAHAYKVF---LKFKDCISLSSQIFDVLIHG-W 222
V RLD+ + +V++D L++ V A+KV L+ + + D+++H W
Sbjct: 174 VYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVW 233
Query: 223 CKTRKSDYAQKAMKEMFQ-HGFSPDGVSYTCFIEHYC----------------------- 258
+ ++ A+ F HG SP+ V T FI C
Sbjct: 234 KERLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLE 293
Query: 259 ------------REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
R D +++ + +M E +P V+T I+++ L K++++ EAL+V+E
Sbjct: 294 APPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFE 353
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC--VRSEEGNALKLRQKIEEDSC 364
+M+ TD I + ++ F NT+I C R +E L +R K+EE C
Sbjct: 354 QMRGKR--TDDGN-----VIKADSIHF---NTLIDGLCKVGRLKEAEELLVRMKLEE-RC 402
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
P+ T+ + C +++ V++ M+E
Sbjct: 403 VPNAVTYNCLIDGYCRAGKLETAKEVVSRMKE 434
>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
Length = 1603
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 121/307 (39%), Gaps = 69/307 (22%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G M T TYNAM+ L L +G V A + + + RAM +L
Sbjct: 1220 GIMPTVVTYNAMIHGL------------------LQSGLVEAAQV----KFAEMRAMGLL 1257
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
D + ++ L++G+CK A ++ + G +
Sbjct: 1258 PDVIT-------------------------YNSLLNGYCKAGNLKEALLLFGDLRRAGLA 1292
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P ++Y I+ YCR D + +EM E+GC P+V T TI+M + + A +
Sbjct: 1293 PTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREF 1352
Query: 305 YEKMKSDDCLTDTSFYSSLI---FILSKAVRF----------------LIYNTMISSACV 345
+++M S D Y++ I IL R + YN +I C
Sbjct: 1353 FDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCK 1412
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+A +L+ K+ + +PDC T+ + C + +++ + N M+S G++P
Sbjct: 1413 TGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFN---NMISDGLLPS 1469
Query: 406 ESTHKML 412
T ++
Sbjct: 1470 AVTFTVI 1476
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 19/188 (10%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS + +++LIHG CKT A++ +M +G PD ++YTC I +C R+
Sbjct: 1396 ISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREAR 1455
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
M G PS +T T+++HA + +Y A + KM + + Y+ LI L
Sbjct: 1456 KIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHAL 1515
Query: 328 SKAVRFLI-------------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
+ R + Y +I C +A++ ++ ++ PD
Sbjct: 1516 CRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDY 1575
Query: 369 ETHARSLK 376
TH LK
Sbjct: 1576 LTHKALLK 1583
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 104/241 (43%), Gaps = 34/241 (14%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF------KDCISLSSQIFDVLIHGWCKTRKSDYAQK-A 234
++LM + S+A A + F + DC + +++I LI G D A+
Sbjct: 1334 TILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILG-------DIARAFE 1386
Query: 235 MKEMFQ-HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
++E+ G S D V+Y I C+ + + +M G +P IT T ++HA
Sbjct: 1387 LREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHC 1446
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
+ + EA K++ M SD +L AV F + +I + C R +A
Sbjct: 1447 ERGLLREARKIFNNMISDG-------------LLPSAVTFTV---IIHAYCRRGNLYSAY 1490
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
+K+ E+ +P+ T+ + C RM L + EML +G+V + T+ +L
Sbjct: 1491 GWFRKMLEEGVEPNEITYNVLIHALC---RMGRTQLASHHFHEMLERGLVANKYTYTLLI 1547
Query: 414 E 414
+
Sbjct: 1548 D 1548
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 24/195 (12%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK--GCKPSVITCTIVMHALE 293
+EM + G P V+Y ++ + +E KV LKEM+ + GC P+ +T +V+ L
Sbjct: 1108 EEMLELGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLT 1167
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
+ + EA ++ E M+ LSK YN +I+ R
Sbjct: 1168 RKGDLEEAAELVEGMR-----------------LSKKASSFTYNPLITGLLARGCVKKVY 1210
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
L+ ++E + P T+ + ++ + MR M G++P T+ L
Sbjct: 1211 DLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAM---GLLPDVITYNSLL 1267
Query: 414 EELEKKSLGNAKERI 428
K GN KE +
Sbjct: 1268 NGYCKA--GNLKEAL 1280
>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 418
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 128/310 (41%), Gaps = 36/310 (11%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W +E L GY + ++LM + VK
Sbjct: 102 DTCRKVJEHLMKLKYFKLVWGFYEE--SLECGYPA-----------SLYFFNILMHSFVK 148
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A VF K + S F+ L++G+ K D + M G PD +
Sbjct: 149 EGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYT 208
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+ I C+E + EM + G P+ +T T ++ K ++ A+++Y++M
Sbjct: 209 YSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 268
Query: 310 SDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEG 350
S D Y++LI+ L K + Y T+I +C
Sbjct: 269 SQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLE 328
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A + R+++ +++ + D + + C + R D ++REMLS G+ P+ T+
Sbjct: 329 TAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLKPEIGTYT 385
Query: 411 MLAEELEKKS 420
M+ E KK
Sbjct: 386 MIINEFCKKG 395
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 135/341 (39%), Gaps = 49/341 (14%)
Query: 98 LRKRYPSPDKVVE---ALKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM- 149
R + + KV+E LK F W + GY + +N ++ + K + L
Sbjct: 97 FRVPFDTCRKVJEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQ 156
Query: 150 --------WEL---VKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTL 188
W L V + L NGY+ L + R + D SVL++ L
Sbjct: 157 SVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGL 216
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
K + + A ++F + D + + + F LI G CK + D A + K+M SPD
Sbjct: 217 CKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDL 276
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
++Y I C++ D ++ EM KG KP IT T ++ K + A + ++
Sbjct: 277 ITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKR 336
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
M ++ D Y++L IS C +A K+ +++ KP+
Sbjct: 337 MIKENIRLDDVAYTAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPE 380
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
T+ + C K + G L++EM G VP T
Sbjct: 381 IGTYTMIINEFCKKGDVWTGS---KLLKEMQRDGYVPSVVT 418
>gi|357502007|ref|XP_003621292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360248|gb|ABN08261.1| Pentatricopeptide repeat [Medicago truncatula]
gi|355496307|gb|AES77510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 738
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 127/313 (40%), Gaps = 38/313 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWE-LVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
G + TY +++AL K WE +V+ DE+ V D+ +
Sbjct: 220 GLIFNEYTYTIVIKALCKKGD----WENVVRVFDEMKEAGVDD----------DSYCYAT 265
Query: 184 LMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
++ L K N Y V ++ + + +I G+C K D A+ EM + G
Sbjct: 266 FIEGLCKNNRSDLGYAVLQDYRTRNAHVHKYAYTAVIRGFCNETKLDEAESVFLEMEKQG 325
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
PD Y + YC ++F K K M +G K + + + ++H L++ + E +
Sbjct: 326 LVPDVYVYCALVHGYCNSRNFDKALAVYKSMISRGIKTNCVIFSCILHCLDEMGRALEVV 385
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSK------AVRFLI-------------YNTMISSA 343
++E+ K D Y+ L L K AV L Y T+I+
Sbjct: 386 DMFEEFKESGLFIDRKAYNILFDALCKLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGY 445
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
++ + A L +++EE KPD + + R + ++L+ M S+G+
Sbjct: 446 FLQGKPIEAQSLFKEMEERGFKPDVVAYNV---LAAGFFRNRTDFEAMDLLNYMESQGVE 502
Query: 404 PQESTHKMLAEEL 416
P +THK++ E L
Sbjct: 503 PNSTTHKIIIEGL 515
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 11/206 (5%)
Query: 104 SPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGY 163
S KV EA + F W K ++ + + E Y A+V ++ L+++ EL +
Sbjct: 517 SAGKVEEAEEFF--NWLKGESVEI-SVEIYTALVNGYCEAA-------LIEKSHELKEAF 566
Query: 164 VSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGW 222
+ L M + + S + L ++ A+ +F L + + + ++I+G+
Sbjct: 567 ILLRTMLEMNMKPSKVMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGY 626
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
CKT A + K+M + G +PD V+YT I YC+ R+ K+M+E+G KP V
Sbjct: 627 CKTNCLPEAHELFKDMKERGITPDAVTYTIMINGYCKMNCLREAHELFKDMKERGIKPDV 686
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKM 308
I T+++ L + A ++Y +M
Sbjct: 687 IAYTVIIKGLLNSGHTEIAFQLYNEM 712
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 102/241 (42%), Gaps = 20/241 (8%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKA 234
+D +A ++L D L K V A + + K + + + + LI+G+ K AQ
Sbjct: 398 IDRKAYNILFDALCKLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQGKPIEAQSL 457
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREK-DFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
KEM + GF PD V+Y + R + DF +D L M+ +G +P+ T I++ L
Sbjct: 458 FKEMEERGFKPDVVAYNVLAAGFFRNRTDFEAMD-LLNYMESQGVEPNSTTHKIIIEGLC 516
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRS--EEGN 351
A ++ EA + + +K + Y++L+ N +A + E
Sbjct: 517 SAGKVEEAEEFFNWLKGESVEISVEIYTALV------------NGYCEAALIEKSHELKE 564
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A L + + E + KP +++ C M+ + NL + G P T+ +
Sbjct: 565 AFILLRTMLEMNMKPSKVMYSKIFTALCCNGNMEGAHTLFNL---FIHTGFTPDAVTYTI 621
Query: 412 L 412
+
Sbjct: 622 M 622
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+ S+IF L C + A GF+PD V+YT I YC+ +
Sbjct: 583 MYSKIFTAL----CCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTNCLPEAHEL 638
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
K+M+E+G P +T TI+++ K + EA ++++ MK D Y+ +I L
Sbjct: 639 FKDMKERGITPDAVTYTIMINGYCKMNCLREAHELFKDMKERGIKPDVIAYTVIIKGLLN 698
Query: 330 A----VRFLIYNTMI 340
+ + F +YN MI
Sbjct: 699 SGHTEIAFQLYNEMI 713
>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 562
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 119/266 (44%), Gaps = 22/266 (8%)
Query: 175 RLDTRAMSVLMDTLVKR--------NSVAHAYKVFLKFKDCISLSSQI-----------F 215
+LD A + + + KR N++ + + + K KD I L +++ F
Sbjct: 255 KLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLKDAIGLFNKMTSENINPDVYTF 314
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
++L+ +CK + A+ + M + G PD V+Y ++ YC + K M
Sbjct: 315 NILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSH 374
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335
+G +V + +I+++ K K + +A+K++++M + YSSLI L K+ R
Sbjct: 375 RGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLIDGLCKSGRISY 434
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
+ R ++ + + L +++++ +P+ T+ + C R++D N+
Sbjct: 435 ALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGRLEDAR---NIFE 491
Query: 396 EMLSKGIVPQESTHKMLAEELEKKSL 421
++L KG +T+ ++ K L
Sbjct: 492 DLLVKGYNITVNTYTVMIHGFCNKGL 517
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 27/170 (15%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK------FKDCISLSSQIFDVLIHGWCKTRKSDY 230
+ R+ S++++ K V A K+F + F + I+ SS LI G CK+ + Y
Sbjct: 380 NVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSS-----LIDGLCKSGRISY 434
Query: 231 AQKAMKEMFQHGFSPDGVS----------------YTCFIEHYCREKDFRKVDYTLKEMQ 274
A + EM G PD ++ YT I+ C+ +++
Sbjct: 435 ALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGRLEDARNIFEDLL 494
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
KG +V T T+++H EA+ + KMK + C+ + Y +I
Sbjct: 495 VKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYEIII 544
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 98/255 (38%), Gaps = 33/255 (12%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+++ +I CK + + A EM PD +Y I +C + +M
Sbjct: 243 MYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLKDAIGLFNKM 302
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--FILSKAV 331
+ P V T I++ A K ++ EA M D Y+SL+ + L V
Sbjct: 303 TSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEV 362
Query: 332 RFL--IYNTMI---SSACVRSEE------------GNALKLRQKIEEDSCKPDCETHARS 374
I+NTM +A VRS A+KL +++ P+ T++
Sbjct: 363 NKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSL 422
Query: 375 LKMCCHKKR------MKDGML-------VLNLMREMLSKGIVPQESTHKMLAEELEKKS- 420
+ C R + D M ++ L R++ +GI P T+ +L + L K
Sbjct: 423 IDGLCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGR 482
Query: 421 LGNAKERIDELLTHA 435
L +A+ ++LL
Sbjct: 483 LEDARNIFEDLLVKG 497
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 17/128 (13%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF------KDCISLSSQIFD-----------VLIHGWCK 224
S L+D L K +++A ++ + D I+L+ Q+ D +LI G CK
Sbjct: 420 SSLIDGLCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCK 479
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
+ + A+ +++ G++ +YT I +C + F + L +M++ C P+ +T
Sbjct: 480 GGRLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVT 539
Query: 285 CTIVMHAL 292
I++ +L
Sbjct: 540 YEIIIRSL 547
>gi|255660958|gb|ACU25648.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 348
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 120/289 (41%), Gaps = 40/289 (13%)
Query: 132 TYNAMVEA---LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL 188
YNAM+ + K K +WE++ S G S+++ + +MR L
Sbjct: 27 VYNAMLNGYFRVAKIKDCFELWEMMG-----SEGNRSVSSFNIMMR------------GL 69
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
V ++ K+ + I + +L+HG+CK D + ++ Q G D
Sbjct: 70 FDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDA 129
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+Y+ I C+E + + Y L M + GCKP+V +++ L A + +A++V+ +
Sbjct: 130 FAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFRE 189
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
M + C + + YNT+I+ C G A L +++ + P
Sbjct: 190 MGTMHC----------------SPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPG 233
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
T++ +K C +++ L L ++ SKG P H +L L
Sbjct: 234 VITYSMLMKGLCLDHKVER---ALQLWNQVTSKGFKPDVQMHNILIHGL 279
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 91/230 (39%), Gaps = 24/230 (10%)
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
C++ D A++ KE+ + SPD V Y + Y R + + L EM SV
Sbjct: 1 CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDC-FELWEMMGSEGNRSV 59
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF------ILSKAVRFL-- 334
+ I+M L ++ E + ++E MK + D+ Y L+ + K++ L
Sbjct: 60 SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119
Query: 335 -----------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
Y+ MI+ C + AL + + + CKP+ + + +
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASK 179
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL-GNAKERIDELL 432
+D + V REM + P T+ L L K + G A + ELL
Sbjct: 180 FEDAIRVF---REMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELL 226
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/320 (20%), Positives = 122/320 (38%), Gaps = 75/320 (23%)
Query: 116 CF-TWAKTQTGYMHTPETYNAMVEAL---GKSKKFGLMWELVKEI----DELS------- 160
CF W + + ++N M+ L GK + +WEL+KE D ++
Sbjct: 44 CFELWEMMGSEGNRSVSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHG 103
Query: 161 ---NGYV--SLAAMSTVMRR---LDTRAMSVLMDTLVKRNSV------------------ 194
NGY+ SL + ++ LD A S +++ L K ++
Sbjct: 104 FCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPN 163
Query: 195 AHAYKVFL-------KFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMK 236
H Y + KF+D I + ++ ++ LI+G CK A +K
Sbjct: 164 VHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVK 223
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
E+ G P ++Y+ ++ C + + ++ KG KP V I++H L
Sbjct: 224 ELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVG 283
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
++ AL +Y M C A + +NT++ + NAL +
Sbjct: 284 KMQLALSLYFDMNRWKC----------------APNLVSHNTLMEGFYKDGDIRNALVIW 327
Query: 357 QKIEEDSCKPDCETHARSLK 376
+I + +PD ++ +LK
Sbjct: 328 ARILRNGLEPDIISYNITLK 347
>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
Length = 845
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 112/263 (42%), Gaps = 25/263 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
D + + L++ L + + A ++F + ++ L+ G C + + ++
Sbjct: 222 DVVSYATLIEGLCEAGRIDEAVELFGEMDQP---DMHMYAALVKGLCNAERGEEGLLMLR 278
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M + G+ P +Y ++ CRE+ ++ + L+EM EKG P V+TCT V++A K
Sbjct: 279 RMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEG 338
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLI------FILSKAVRFL-------------IYN 337
++ +AL+V E MK C + Y++L+ + KA+ L YN
Sbjct: 339 RMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYN 398
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+I C+ +A +L + +E D D T+ + C R +L +
Sbjct: 399 LLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQA---CSLFDSL 455
Query: 398 LSKGIVPQESTHKMLAEELEKKS 420
++GI P T L L K
Sbjct: 456 ETRGIKPNAVTFNSLINGLCKSG 478
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 110/246 (44%), Gaps = 20/246 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + L++ L K A +F + I ++ F+ LI+G CK+ K+D A K +
Sbjct: 428 DQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFL 487
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++M G +PD +Y+ FIEH C+ K ++ + EM +K KPS + TIV+H L K
Sbjct: 488 EKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKE 547
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ + + +M S C D + Y T + + C+ A +
Sbjct: 548 RNYGLVARTWGEMVSSGCNPDV----------------VTYTTSMRAYCIEGRLNEAENV 591
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
++ ++ D T A + M H + V +++++M S VP + T+ +L
Sbjct: 592 LMEMSKNGVTVD--TMAYNTLMDGHASIGQTDHAV-SILKQMTSVASVPNQFTYFILLRH 648
Query: 416 LEKKSL 421
L + L
Sbjct: 649 LVRMRL 654
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/322 (21%), Positives = 126/322 (39%), Gaps = 45/322 (13%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMS 170
+ G+ + Y A+V+ + +K E+++E+ E + N Y MS
Sbjct: 282 ELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMS 341
Query: 171 TVMRRLDTRAM----------SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLI 219
+R L+ + + L+ V A + K + C ++ + +++LI
Sbjct: 342 DALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLI 401
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
G C + A + ++ M G D +Y I C++ + ++ +G K
Sbjct: 402 RGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIK 461
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--------------F 325
P+ +T +++ L K+ + A K EKM S C DT YSS I F
Sbjct: 462 PNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSF 521
Query: 326 I---LSKAVRFLIYNTMISSACVRSEEGNALKLRQ--KIEEDSCKPDCETHARSLKMCCH 380
I L K V+ N I + E L R ++ C PD T+ S++ C
Sbjct: 522 IGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCI 581
Query: 381 KKRMKDGMLVLNLMREMLSKGI 402
+ R+ + N++ EM G+
Sbjct: 582 EGRLNEAE---NVLMEMSKNGV 600
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 84/194 (43%), Gaps = 23/194 (11%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ ++ +I C+ A + + M + G+ PD ++ I YCR
Sbjct: 152 TAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLF 211
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
+M +G V++ ++ L +A +I EA++++ +M D Y++L+ L A
Sbjct: 212 DKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQ----PDMHMYAALVKGLCNA 267
Query: 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
R EEG L + ++++E +P +A + C +++ K+
Sbjct: 268 --------------ERGEEG--LLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAE-- 309
Query: 391 LNLMREMLSKGIVP 404
+++EM KG+ P
Sbjct: 310 -EMLQEMFEKGLAP 322
>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
Length = 528
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 116/273 (42%), Gaps = 26/273 (9%)
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ A++ L+ +L VA A +FL+F I ++ ++ L+ G+ K A++ +
Sbjct: 123 SNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVL 182
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM Q G +PD +Y+ ++ Y R + LKEM+ G KPS + ++
Sbjct: 183 DEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDR 242
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIY 336
+ +A V +M + D FY+ +I K + +
Sbjct: 243 GEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTW 302
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT+I + C A++L ++ E +C T+ + + ++R + V ++ E
Sbjct: 303 NTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEG---VEAMLAE 359
Query: 397 MLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
M +G+VP T+ L + + G KE +D
Sbjct: 360 MKEQGLVPNIITYTTLVDVYGRS--GRFKEAVD 390
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/337 (21%), Positives = 136/337 (40%), Gaps = 45/337 (13%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEID----------------------EL 159
+Q G TY+ +V+A ++ ++ L+KE++ E
Sbjct: 186 SQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEW 245
Query: 160 SNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVL 218
+ L M R D +V++DT K N + HA F + ++ I ++ L
Sbjct: 246 QKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTL 305
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
I CK + D A + EM + +Y I E+ + V+ L EM+E+G
Sbjct: 306 IDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGL 365
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------------FI 326
P++IT T ++ ++ + EA+ E MK+D ++ Y +L+
Sbjct: 366 VPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALN 425
Query: 327 LSKAVRF-------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC 379
+ KA+R ++ N++I++ A + Q ++E+ +PD T+ +K
Sbjct: 426 VVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALI 485
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ + V + EM++ G P ML L
Sbjct: 486 RVEQFEK---VPVIYEEMITSGCAPDRKARAMLRSAL 519
>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 418
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 126/310 (40%), Gaps = 36/310 (11%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W +E L GY + ++LM K
Sbjct: 102 DTCRKVIEHLMKLKYFKLVWGFYEE--SLECGYPA-----------SLYFFNILMHXFCK 148
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A VF K + S F+ L++G+ K D + M G PD +
Sbjct: 149 EGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYT 208
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+ I C+E + EM + G P+ +T T ++ K ++ A+++Y +M
Sbjct: 209 YSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQML 268
Query: 310 SDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEG 350
S L D Y++LI+ L K + Y T+I C +
Sbjct: 269 SQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLE 328
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A + R+++ +++ + D + + C + R D ++REMLS G+ P+ T+
Sbjct: 329 TAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLKPEIGTYT 385
Query: 411 MLAEELEKKS 420
M+ E KK
Sbjct: 386 MIINEXCKKG 395
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/388 (22%), Positives = 152/388 (39%), Gaps = 60/388 (15%)
Query: 51 TQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVE 110
TQ D + +++ES L + I + L+++H+ R + + KV+E
Sbjct: 61 TQRSDXYVFSGLITAYLESGFLRDA--IECYRLTKEHK---------FRVPFDTCRKVIE 109
Query: 111 ---ALKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM---------WEL-- 152
LK F W + GY + +N ++ K + L W L
Sbjct: 110 HLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRP 169
Query: 153 -VKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVF 201
V + L NGY+ + + R D SVL++ L K + + A ++F
Sbjct: 170 SVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELF 229
Query: 202 LKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
+ B + + + F LI G CK + D A + ++M PD ++Y I C++
Sbjct: 230 DEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKK 289
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
D ++ + EM KG KP IT T ++ K + A + ++M ++ D Y
Sbjct: 290 GDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAY 349
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
++L IS C +A K+ +++ KP+ T+ + C
Sbjct: 350 TAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCK 393
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQEST 408
K + G L++EM G VP T
Sbjct: 394 KGDVWTGS---KLLKEMQRXGYVPNVVT 418
>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 418
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 128/310 (41%), Gaps = 36/310 (11%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W +E L GY + ++LM + VK
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWGFYEE--NLECGYPA-----------SLYFFNILMHSFVK 148
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A VF K + S F+ L++G+ K + + M G PD +
Sbjct: 149 EGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYT 208
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+ I C+E + EM +KG P+ +T T ++ K ++ A+++Y++M
Sbjct: 209 YSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 268
Query: 310 SDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEG 350
S D Y++LI+ L K Y T+I C +
Sbjct: 269 SQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLE 328
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A + R+++ +++ + D + + C + R D ++REMLS G+ P+ T+
Sbjct: 329 TAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLKPEIGTYT 385
Query: 411 MLAEELEKKS 420
M+ E KK
Sbjct: 386 MIINEFCKKG 395
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 152/388 (39%), Gaps = 60/388 (15%)
Query: 51 TQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVE 110
TQ D + +++ES L + I + L+++H+ R + + KV+E
Sbjct: 61 TQRSDIYVFSGLITAYLESGFLRDA--IECYRLTKEHK---------FRVPFDTCRKVLE 109
Query: 111 ---ALKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM---------WEL-- 152
LK F W + GY + +N ++ + K + L W L
Sbjct: 110 HLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRP 169
Query: 153 -VKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVF 201
V + L NGY+ L ++ R + D SVL++ L K + + A +F
Sbjct: 170 SVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLF 229
Query: 202 LKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
+ D + + F LI G CK + D A + K+M SPD ++Y I C++
Sbjct: 230 DEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 289
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
D ++ + EM KG KP T T ++ K + A + ++M ++ D Y
Sbjct: 290 GDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
++L IS C +A K+ +++ KP+ T+ + C
Sbjct: 350 TAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQEST 408
K + G L++EM G P T
Sbjct: 394 KGDVWXGS---KLLKEMQRDGYKPSVVT 418
>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g16010-like [Cucumis sativus]
Length = 637
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 147/370 (39%), Gaps = 58/370 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA + + H TY A++ L +S MW ++++ S V A S +++ L
Sbjct: 111 FKWAGKRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIR-SPCSVGPAEWSEILKIL 169
Query: 177 D-----TRAMSVLMDTLVKR-NSVAHAYKVFLKF--------------------KDCISL 210
+A+SV ++ N A Y + +C S
Sbjct: 170 GKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNC-SP 228
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
+ + LI + K + D+A + EM ++G P YT + Y + +
Sbjct: 229 DTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLV 288
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
+EM+ KGC P+V T T ++ L K ++ +A ++ M D C D ++LI IL +A
Sbjct: 289 EEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRA 348
Query: 331 VRF-------------------LIYNTMISSAC-VRSEEGNALKLRQKIEEDSCKPDCET 370
R + YNT+I + ++ A +K++ + P T
Sbjct: 349 GRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFT 408
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAK--ERI 428
+A + C R++ +L L+ EM KG P + + L + SLG AK E
Sbjct: 409 YAILIDGFCKTNRVEKALL---LLEEMDEKGFPPCPAAYCSLID-----SLGRAKRYEAA 460
Query: 429 DELLTHATEQ 438
+EL E
Sbjct: 461 NELFQELKEN 470
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 111/250 (44%), Gaps = 21/250 (8%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
G + TY +++ K+ + L++E+DE G+ A A
Sbjct: 400 NGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDE--KGFPPCPA-----------AYCS 446
Query: 184 LMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+D+L + A ++F + K +C S++++ V+I + + A E + G
Sbjct: 447 LIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLG 506
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
SPD +Y + R + ++ M+E GC P + + I+++ L K A+
Sbjct: 507 CSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAI 566
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA------LKLR 356
+++ KMK + + D Y++++ LS+A F + ++ ++ E ++ L+
Sbjct: 567 EMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEAV 626
Query: 357 QKIEEDSCKP 366
K++ED C P
Sbjct: 627 GKVDED-CSP 635
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 75/353 (21%), Positives = 138/353 (39%), Gaps = 78/353 (22%)
Query: 125 GYMHTPETYNAMVEALGKSKK----FGLMWELVKE--------IDELSNGYVSLAAMSTV 172
G T TY +++ LGK + + L + ++K+ I+ L N +
Sbjct: 295 GCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDA 354
Query: 173 MR---RLDTRAMS---VLMDTLVKR--NSVAHAYKVFLKFK----DCISLSSQIFDVLIH 220
++ ++D+ + V +T++K S A A + L F+ + I+ SS + +LI
Sbjct: 355 LKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILID 414
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK---- 276
G+CKT + + A ++EM + GF P +Y I+ R K + + +E++E
Sbjct: 415 GFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRS 474
Query: 277 -------------------------------GCKPSVITCTIVMHALEKAKQIYEALKVY 305
GC P V T +M + +A I EA +
Sbjct: 475 SARVYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLM 534
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
M+ + C D ++ ++ L+K A+++ K++E
Sbjct: 535 RNMRENGCTPDIKSHNIILNGLAKT----------------GGPKRAIEMFTKMKESEIM 578
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
PD ++ L C + M + + LMREM KG T+ + E + K
Sbjct: 579 PDAVSYNTILS-CLSRAGMFE--MAAKLMREMKLKGFEYDSITYSSILEAVGK 628
>gi|15222491|ref|NP_176550.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|332195999|gb|AEE34120.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 257
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 105/227 (46%), Gaps = 24/227 (10%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ +S+ I D L CK AQ EM + G P+ ++Y C I+ +C + D
Sbjct: 10 VVISTAIVDRL----CKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDAD 65
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
L+ M EK P ++T + +++A K +++ EA ++Y++M L + F ++
Sbjct: 66 QLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEM-----LRWSIFPTT----- 115
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+ YN+MI C + +A ++ + C PD T + + C KR+ +G
Sbjct: 116 ------ITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNG 169
Query: 388 MLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLT 433
M + EM +GIV T+ L + L A++ ++E+++
Sbjct: 170 M---EIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMIS 213
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 17/184 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T++A++ A K +K V E +E+ + + T T + ++D K+
Sbjct: 82 TFSALINAFVKERK-------VSEAEEIYKEMLRWSIFPT------TITYNSMIDGFCKQ 128
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ V A ++ + K C S F LI+G+CK ++ D + EM + G + V+
Sbjct: 129 DRVDDAKRMLDSMASKGC-SPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVT 187
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM- 308
YT I +C+ D L EM G P IT ++ L K++ +A + E +
Sbjct: 188 YTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILEDLQ 247
Query: 309 KSDD 312
KS+D
Sbjct: 248 KSED 251
>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 110/255 (43%), Gaps = 22/255 (8%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ L KR V A + F K + +++ + +L+ GW S A+K +EM + G
Sbjct: 164 LLYVLCKRKHVKQAQEFFDKVNVEVMPNAKTYSILMRGWGDVGDSSEARKLFEEMRERGC 223
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+ D V+Y +E C+ + + +EM G P + +I + A + I+ A +
Sbjct: 224 AVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQ 283
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSAC 344
V ++M+ + + + Y+ ++ L K+ + YN + + C
Sbjct: 284 VLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHC 343
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
E AL+L ++E+++C PD T+ LKM R V ++ M +G P
Sbjct: 344 DHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDR---VTDVWGGMEERGFYP 400
Query: 405 QESTHKMLAEELEKK 419
ST+ ++ KK
Sbjct: 401 AASTYAVMVHGFCKK 415
>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
Length = 583
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 118/274 (43%), Gaps = 20/274 (7%)
Query: 144 KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK 203
+ +G++ +I ++ + LA M L+ + ++D ++ V A K+
Sbjct: 318 RTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAA 377
Query: 204 F-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
K + L ++ L G C+ + D A+ + M + G P+ V+YT I +C++ D
Sbjct: 378 MEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGD 437
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
+ +EM EKG PSV+T +++ K I EA + ++M+ + D Y+S
Sbjct: 438 MVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYAS 497
Query: 323 LIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
L+ CV + ALKL +++++ +P+ + + +
Sbjct: 498 LVH----------------GHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEG 541
Query: 383 RMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
R + L +ML G++P +S + L L
Sbjct: 542 RSE---AAFQLYDDMLKAGLIPDDSLYSALVGSL 572
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 69/116 (59%)
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
S+S V++ G CK+ + D A++ + +M +HG S + + Y ++ Y R+KD +V
Sbjct: 174 SVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQE 233
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
L+ M+ +G + +V T TI++ +L A+ I + ++ +MK+++ + D Y+++I
Sbjct: 234 ILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVI 289
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 105/253 (41%), Gaps = 23/253 (9%)
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
A SV++D L K V A ++ + +SL++ ++ L+ + + + Q+ ++ M
Sbjct: 179 AASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIM 238
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
G +YT ++ +D KV+ EM+ V T V++A +A +
Sbjct: 239 ENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNM 298
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIYNTM 339
A KV ++ + + Y LI K + +I+NTM
Sbjct: 299 RRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTM 358
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I C + +ALK++ +E+ + D T+ C R+ + +L++M EM
Sbjct: 359 IDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEM-- 416
Query: 400 KGIVPQESTHKML 412
G+VP T+ L
Sbjct: 417 -GVVPNYVTYTTL 428
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/249 (20%), Positives = 97/249 (38%), Gaps = 24/249 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++L+D+L ++ +F + K + + ++ +I+ +C+ A K + E
Sbjct: 251 TILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVG 310
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
+G P+ +Y I +C+ + L +MQ +G + I ++ + + +
Sbjct: 311 NGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDD 370
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
ALK+ M+ + + YNT+ C + A L +
Sbjct: 371 ALKIKAAMEK----------------MGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMI 414
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLV--LNLMREMLSKGIVPQESTHKMLAEELEK 418
E P+ T+ + + C KDG +V L REM KG P T+ ++ + K
Sbjct: 415 EMGVVPNYVTYTTLISIHC-----KDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTK 469
Query: 419 KSLGNAKER 427
K ER
Sbjct: 470 KGSIREAER 478
>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
Length = 932
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 23/214 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L+ G+C+ K D A + + M+ G +PD ++Y + C+ +V K M
Sbjct: 543 YNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMT 602
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
EKGC P++IT ++ +L +K++ EA+ + +MKS D + +LI K
Sbjct: 603 EKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLD 662
Query: 334 -------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
YN +IS+ + AL+L +++++ C PD T+
Sbjct: 663 GAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVL 722
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+ C + G + E + KG +P +T
Sbjct: 723 IDGFCKTGNVNQG---YKFLLENIEKGFIPSLTT 753
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 100/237 (42%), Gaps = 23/237 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I G+CK A + +K+ GF PD +Y + +C++ D + K+
Sbjct: 403 YNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGL 462
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
KG +PS+I ++ L + I AL++ +M C D Y+ +I
Sbjct: 463 GKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLS 522
Query: 325 ---FILSKAVR------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++ A+ YNT++ C + + +A++L ++ PD T+ L
Sbjct: 523 DANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLL 582
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
C + ++ V+ + + M KG P T+ + E L K + A + + E+
Sbjct: 583 NGLCKTAKSEE---VMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEM 636
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 135/334 (40%), Gaps = 47/334 (14%)
Query: 121 KTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI-DELSNGY---VSLAAMSTVMR-- 174
KT+ G+ HT TY +M++ LG KF M L+ E+ L N V + AM R
Sbjct: 110 KTKQGFKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSNLDNTLLEGVYVEAMRFYGRKG 169
Query: 175 ----------RLD-------TRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFD 216
R+D + + +M+ LV+ A+KV+++ KD + +
Sbjct: 170 KIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYT 229
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
+ I +C+T + A + ++ M G + V+Y + + D + EM E
Sbjct: 230 IRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLEC 289
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV--RFL 334
P V T ++HAL K + E+ ++++K +L + V
Sbjct: 290 CLCPDVTTFNKLVHALCKKGFVLESERLFDK------------------VLKRGVCPNLF 331
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+N I C A++L + + +PD T+ + C K R+ + L+
Sbjct: 332 TFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLH-- 389
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
+M++ G P + T+ + + KK + RI
Sbjct: 390 -KMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRI 422
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 85/191 (44%), Gaps = 19/191 (9%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+++ LI G C+ A + M EM + G PD +Y I C+ ++ + +
Sbjct: 472 VYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDA 531
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
KGC P + T ++ + ++ A+++ +M S D
Sbjct: 532 ITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDV---------------- 575
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ YNT+++ C ++ +++ + + E C P+ T+ ++ C+ K++ + ++L
Sbjct: 576 ITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNE---AVDL 632
Query: 394 MREMLSKGIVP 404
+ EM SKG+ P
Sbjct: 633 LGEMKSKGLTP 643
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 109/257 (42%), Gaps = 23/257 (8%)
Query: 65 SWVESLKLNEQSRISSHALSEDHETDVDKVSEILRK--RYPSPDKVVEALKCFCFTWAKT 122
+ LKL+ + + S+ DV + +L + ++V+E K A T
Sbjct: 549 GYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFK------AMT 602
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G TYN ++E+L SKK +L+ E+ S G D +
Sbjct: 603 EKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMK--SKGLTP-----------DVVSFG 649
Query: 183 VLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L+ K + AY +F ++ + +S ++ ++++I + + A + EM +
Sbjct: 650 TLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKK 709
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
+G PD +Y I+ +C+ + + L E EKG PS+ T V++ L ++ E
Sbjct: 710 NGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQE 769
Query: 301 ALKVYEKMKSDDCLTDT 317
A+ + M D + DT
Sbjct: 770 AVGIIHLMVQKDIVPDT 786
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/262 (19%), Positives = 98/262 (37%), Gaps = 57/262 (21%)
Query: 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
C+ F+ L+H CK +++ ++ + G P+ ++ FI+ C+E +
Sbjct: 290 CLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRA 349
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-- 324
L + +G +P V+T V+ L + ++ EA + KM + + Y+S+I
Sbjct: 350 VRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDG 409
Query: 325 -----------FILSKAV-----------------------------------------R 332
IL AV
Sbjct: 410 YCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPS 469
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
++YNT+I C + AL+L ++ E CKPD T+ + C + D +
Sbjct: 470 IIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDAN---H 526
Query: 393 LMREMLSKGIVPQESTHKMLAE 414
L+ + ++KG +P T+ L +
Sbjct: 527 LIGDAITKGCIPDIFTYNTLVD 548
>gi|115455091|ref|NP_001051146.1| Os03g0728200 [Oryza sativa Japonica Group]
gi|50428716|gb|AAT77067.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108710874|gb|ABF98669.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113549617|dbj|BAF13060.1| Os03g0728200 [Oryza sativa Japonica Group]
Length = 601
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 103/234 (44%), Gaps = 20/234 (8%)
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
K VA A ++ + + + LS + + L++GWC+ K D A+ + M +PD V
Sbjct: 172 AKTGHVAVAEQLVEELQPRLPLSLRHYTALLYGWCRMGKLDEAKHVLARMKAAEVAPDVV 231
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+ + + + F +EM+ +GC P+ ++ T +M L ++ EA++V+ +M
Sbjct: 232 VFNTLLAGFVADGRFEDAFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEM 291
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRF---LIYNTMISSACVRSEEG--------------- 350
+ C D+ Y +L+ KA R + +++ +R + G
Sbjct: 292 RRKGCAPDSVTYGTLVTAFCKAGRISQGYEFLDVMAREGLRVDAGVYLGFFVAHEKKEQL 351
Query: 351 -NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR-EMLSKGI 402
L+L +++ E C PD + +++ C K + + N M LS G+
Sbjct: 352 EECLELMERMRECRCPPDLSIYNVVIRLACKLGETKQAVALWNEMETNELSPGV 405
>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
Length = 332
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 105/227 (46%), Gaps = 24/227 (10%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ +S+ I D L CK AQ EM + G P+ ++Y C I+ +C + D
Sbjct: 55 VVISTAIVDRL----CKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDAD 110
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
L+ M EK P ++T + +++A K +++ EA ++Y++M L + F ++
Sbjct: 111 QLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEM-----LRWSIFPTT----- 160
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+ YN+MI C + +A ++ + C PD T + + C KR+ +G
Sbjct: 161 ------ITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNG 214
Query: 388 MLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLT 433
M + EM +GIV T+ L + L A++ ++E+++
Sbjct: 215 M---EIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMIS 258
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 16/177 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F LI+ + K RK A++ KEM + P ++Y I+ +C++ L M
Sbjct: 128 FSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMA 187
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
KGC P V+T + +++ KAK++ ++++ +M + +T +
Sbjct: 188 SKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANT----------------V 231
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
Y T+I C + A L ++ PD T L C KK ++ +L
Sbjct: 232 TYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAIL 288
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 24/207 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T++A++ A K +K V E +E+ + + T T + ++D K+
Sbjct: 127 TFSALINAFVKERK-------VSEAEEIYKEMLRWSIFPT------TITYNSMIDGFCKQ 173
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ V A ++ + K C S F LI+G+CK ++ D + EM + G + V+
Sbjct: 174 DRVDDAKRMLDSMASKGC-SPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVT 232
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM- 308
YT I +C+ D L EM G P IT ++ L K++ +A + E +
Sbjct: 233 YTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILEDLQ 292
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRFLI 335
KS+ C LIF L F++
Sbjct: 293 KSEVC-------PRLIFFLFSLCSFIL 312
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 10/161 (6%)
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M E GC+P+V+T +M++L + ++ EAL + ++M + + S +
Sbjct: 1 MVETGCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHI------KAD 54
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
+I ++ C NA L ++ E P+ T+ + CH R D
Sbjct: 55 VVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDAD---Q 111
Query: 393 LMREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDELL 432
L+R M+ K I P T L K + + A+E E+L
Sbjct: 112 LLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEML 152
>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
viburnoides]
Length = 431
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 117/280 (41%), Gaps = 33/280 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L + R + D SVL++ K +
Sbjct: 170 KWGLRPSVV-SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKX 228
Query: 195 AHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
A ++F + K + + F LI G CK + D A + K+M SPD ++Y
Sbjct: 229 DDANELFDEMLVKGLVP-NXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 287
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I C++ D ++ + + EM KG KP IT T ++ K + A + ++M ++
Sbjct: 288 LIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQEN 347
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
D Y++L IS C +A K+ +++ KPD T+
Sbjct: 348 XRLDXVXYTAL----------------ISGLCXEGRSVDAEKMLREMLSVGLKPDARTYT 391
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C K + G L++EM G VP T+ +L
Sbjct: 392 MIINEFCKKGDVWKGS---KLLKEMQRDGHVPSVVTYNVL 428
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 102/261 (39%), Gaps = 51/261 (19%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
S F++L+H +CK AQ + + G P VSY + Y R D +
Sbjct: 141 SLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 200
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------ 324
M G +P V T +++++ K + +A +++++M + + +++LI
Sbjct: 201 SAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKN 260
Query: 325 -----------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+LS+++ + YNT+I C + + A L ++ KPD T+
Sbjct: 261 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITY 320
Query: 372 ARSLKMCC----------HKKRMKDGMLVLN----------------------LMREMLS 399
+ CC H KRM L+ ++REMLS
Sbjct: 321 TTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLS 380
Query: 400 KGIVPQESTHKMLAEELEKKS 420
G+ P T+ M+ E KK
Sbjct: 381 VGLKPDARTYTMIINEFCKKG 401
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 14/161 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K L+ E MS + D + L+D K
Sbjct: 284 TYNTLIYGLCKKGDLKQAHHLIDE-------------MSXKGLKPDKITYTTLIDGCCKE 330
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A++ + ++ L + LI G C +S A+K ++EM G PD +Y
Sbjct: 331 GDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTY 390
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
T I +C++ D K LKEMQ G PSV+T ++M+
Sbjct: 391 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G CK D A + K M Q D V YT I C E + L+EM
Sbjct: 320 YTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREML 379
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G KP T T++++ K +++ K+ ++M+ D + Y+ L+
Sbjct: 380 SVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/198 (19%), Positives = 79/198 (39%), Gaps = 22/198 (11%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+E+ + G+ + + +C++ D R + + G +PSV++ +M+ +
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIF-----------------ILSKAV--RFLIY 336
+ E ++ M + D YS LI +L K + + +
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXF 250
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
T+I C A+++ +++ S PD T+ + C K +K +L+ E
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH---HLIDE 307
Query: 397 MLSKGIVPQESTHKMLAE 414
M KG+ P + T+ L +
Sbjct: 308 MSXKGLKPDKITYTTLID 325
>gi|255580552|ref|XP_002531100.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529296|gb|EEF31265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 483
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 131/314 (41%), Gaps = 42/314 (13%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELS--------------NGYVSLAA 168
Q G+ H +Y+A+V L +S++F + ++ + + + G V L A
Sbjct: 73 QNGFRHDYPSYSALVYKLARSRRFEAVETVLGYLQDFNVRCRDTLFIALFEHYGKVGLVA 132
Query: 169 MSTVMRRLDT--------RAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLI 219
+ + T ++ + L++ LV + + A ++F + + L+S F++LI
Sbjct: 133 KAIRLFNEMTGFNCIRTLQSFNALLNVLVDNDRLFDAKQLFDRSSEMGFRLNSVPFNILI 192
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
GW K + A K EM + P V+Y I + CR + K K+M +KG +
Sbjct: 193 KGWLKKGEWYQAGKVFDEMLERKVEPSVVTYNSLIGYLCRNGELGKAKGLFKDMIKKGKR 252
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY---------------SSLI 324
P+ +T ++M L + EA K+ M+ C + + L+
Sbjct: 253 PNAVTYALLMEGLCSMGEYKEAKKMLFDMEYRGCKPKNLNFGVLMNDLGKKGKIEEAKLL 312
Query: 325 FILSKAVRF----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
+ K RF +IYN +I+ C + A K +++ C+ + T+ C
Sbjct: 313 LLEMKKRRFRPDVVIYNILINHLCKEGKVAEAYKTLFEMQIGGCEANAATYRMLADGFCQ 372
Query: 381 KKRMKDGMLVLNLM 394
++G+ VLN M
Sbjct: 373 VGEFEEGLKVLNAM 386
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 83/217 (38%), Gaps = 24/217 (11%)
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A + Q+GF D SY+ + R + F V+ L +Q+ + +
Sbjct: 62 DKALSLFHDYLQNGFRHDYPSYSALVYKLARSRRFEAVETVLGYLQDFNVRCRDTLFIAL 121
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--------------- 333
K + +A++++ +M +C+ +++L+ +L R
Sbjct: 122 FEHYGKVGLVAKAIRLFNEMTGFNCIRTLQSFNALLNVLVDNDRLFDAKQLFDRSSEMGF 181
Query: 334 ----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ +N +I + E A K+ ++ E +P T+ + C +
Sbjct: 182 RLNSVPFNILIKGWLKKGEWYQAGKVFDEMLERKVEPSVVTYNSLIGYLCRNGELGKAK- 240
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
L ++M+ KG P T+ +L E L S+G KE
Sbjct: 241 --GLFKDMIKKGKRPNAVTYALLMEGL--CSMGEYKE 273
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 1/145 (0%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
VLM+ L K+ + A + L+ K I+++LI+ CK K A K + EM
Sbjct: 293 FGVLMNDLGKKGKIEEAKLLLLEMKKRRFRPDVVIYNILINHLCKEGKVAEAYKTLFEMQ 352
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G + +Y + +C+ +F + L M P + T + L K+ I
Sbjct: 353 IGGCEANAATYRMLADGFCQVGEFEEGLKVLNAMLVSRHAPRIETFNCFVVGLMKSGSID 412
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLI 324
A V E+M+ D+ + +L+
Sbjct: 413 GAFFVLEEMEKRKMALDSDGWEALV 437
>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
Length = 991
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/340 (20%), Positives = 144/340 (42%), Gaps = 33/340 (9%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
V+++ R +P+ A F W + G+ HT +++ A++ L + + LV
Sbjct: 57 VADLFRADSTAPEP---ATALAFFEWLARRDGFRHTADSHAALLHLLSRRRAPAQYERLV 113
Query: 154 KEI----DELSNGYVSLAAMSTVMRR------LDTRAMSVLMDTLVKRNSVAHAYKVFLK 203
+ D + VS A+ + R L + + + +L + + + +V+ +
Sbjct: 114 VSMLNCSDTAEDMRVSADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQ 173
Query: 204 F-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
+D + + ++ +I +CK A + + + + G P+ + + YCR +
Sbjct: 174 LVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGE 233
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
RK + M GC+ + + TI++ L AK + +AL ++ MK D C + ++
Sbjct: 234 LRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTF 293
Query: 323 LIFILSKAVR-------------------FLIYNTMISSACVRSEEGNALKLRQKIEEDS 363
LI L K+ R + YN MI +ALK+++ +E++
Sbjct: 294 LISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNG 353
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C PD T+ + C +K + L+ N ++E + +V
Sbjct: 354 CHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVV 393
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 133/335 (39%), Gaps = 69/335 (20%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ +GL + +E +EL N V TV V L+
Sbjct: 360 TYNTLI--------YGLCDQKTEEAEELLNNAVKEGFTPTV----------VTFTNLING 401
Query: 192 NSVAHAYKVFLKFKDCI-----SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
+A + L+ K+ + L Q+F LI+ K + A++ + E+ +G P+
Sbjct: 402 YCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPN 461
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
++YT I+ YC+ LK M+ GC+P+ T +M+ L K K++++A+ +
Sbjct: 462 VITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLT 521
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
KM+ D + + + Y T++ C + NA +L + +E++ KP
Sbjct: 522 KMQKDGIIPNV----------------ITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKP 565
Query: 367 DCETHARSLKMCCHKKR----------------------MKDGM-------LVLNLMREM 397
D +A C R + DG L+ M
Sbjct: 566 DEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERM 625
Query: 398 LSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
+ +G P T+ +L L ++K L A +D++
Sbjct: 626 IDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQM 660
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 95/213 (44%), Gaps = 21/213 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +LI G C + A M + G SP+ ++T I C+ M
Sbjct: 256 YTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMP 315
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF--------- 325
+ G PSV+T ++ K ++ +ALK+ E M+ + C D Y++LI+
Sbjct: 316 QNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEE 375
Query: 326 ---ILSKAVR------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+L+ AV+ + + +I+ C+ + +AL+++ K+ CK D + + +
Sbjct: 376 AEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLIN 435
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
K R+K+ +LN E+ + G+VP T+
Sbjct: 436 SLIKKDRLKEAKELLN---EISANGLVPNVITY 465
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 113/258 (43%), Gaps = 24/258 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+ RA + L+ L K V A +F ++ + S ++ +I G+ K + + A K
Sbjct: 287 NVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIK 346
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ M ++G PD +Y I C +K + + L ++G P+V+T T +++ A
Sbjct: 347 ELMEKNGCHPDDWTYNTLIYGLCDQKT-EEAEELLNNAVKEGFTPTVVTFTNLINGYCMA 405
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIY 336
++ +AL++ KM S C D + LI L K R + Y
Sbjct: 406 EKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITY 465
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
++I C + AL++ + +E D C+P+ T+ + K++ M +L M++
Sbjct: 466 TSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQK 525
Query: 397 MLSKGIVPQESTHKMLAE 414
GI+P T+ L +
Sbjct: 526 ---DGIIPNVITYTTLLQ 540
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 99/240 (41%), Gaps = 10/240 (4%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF----LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQ 232
D+ SVL+ L K+ + A + L+ C + + +LI + K D+A+
Sbjct: 633 DSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFA---YTILIDEMLREGKHDHAK 689
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ EM G P +YT FI YC+E + + +M+ +G P V+T I++
Sbjct: 690 RMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGC 749
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA 352
I A ++M C + Y L+ L K + + S E
Sbjct: 750 GHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDIT 809
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+L +++ + P T++ + C R+++ L+L+ M KG+ P E + +L
Sbjct: 810 WQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLD---HMCGKGLSPNEDIYTLL 866
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 102/249 (40%), Gaps = 21/249 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
D A +VL D L K AY ++ ++L+ + LI G+ K +D+A ++
Sbjct: 566 DEHAYAVLTDALCKAGRAEEAYSFIVR--KGVALTKVYYTTLIDGFSKAGNTDFAATLIE 623
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M G +PD +Y+ + C++K + L +M +G K ++ TI++ + +
Sbjct: 624 RMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREG 683
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
+ A ++Y +M S + Y+ I+S C +A L
Sbjct: 684 KHDHAKRMYNEMTSSGHKPSATTYT----------------VFINSYCKEGRLEDAEDLI 727
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
K+E + PD T+ + C H + + ++ M+ P T+ +L + L
Sbjct: 728 LKMEREGVAPDVVTYNILIDGCGHMGYIDRA---FSTLKRMVGASCEPNYWTYCLLLKHL 784
Query: 417 EKKSLGNAK 425
K +L +
Sbjct: 785 LKGNLAYVR 793
>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 117/270 (43%), Gaps = 24/270 (8%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ L++ L K+ V A + + F+ +S + LI G C+ R D A M
Sbjct: 201 FNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMV 260
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ G P+ V+Y+ I C E + L+EM EKG +P+V T T+ + AL +
Sbjct: 261 KEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEE 320
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMI 340
EA+++ +MK C + Y++LI LS+ + + YN +I
Sbjct: 321 EAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALI 380
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+ CV ALK+ +E + +T+ +K C ++ M+ L +ML
Sbjct: 381 NELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMV---LFEKMLKM 437
Query: 401 GIVPQESTHKMLAEE-LEKKSLGNAKERID 429
G +P T+ L L K ++ NA +D
Sbjct: 438 GPLPTVVTYNTLINGYLTKGNVNNAARLLD 467
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 136/335 (40%), Gaps = 57/335 (17%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEAL---GKSKKFGLMWE---------LVKEIDELSNGYV 164
F W + G + +TYN +++ L G +K +++E V + L NGY+
Sbjct: 396 FHWMEGH-GSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYL 454
Query: 165 SLAAMSTVMRRLDTR----------AMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQ 213
+ ++ R LD + L+ K + A F + +C ++ +
Sbjct: 455 TKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPV 514
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ LI G K K D A +K M + G +P+ SY I +E F + + +M
Sbjct: 515 SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 574
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
E+G P+VIT T ++ L + + A K++ M+ CL + YSSLI+ L
Sbjct: 575 VEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGL------ 628
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN- 392
C + A L +++E PD T + DG +VL
Sbjct: 629 ----------CQEGKADEAEILLKEMERKGLAPDEVTFT----------SLIDGFVVLGR 668
Query: 393 ------LMREMLSKGIVPQESTHKMLAEELEKKSL 421
L+R M+ G P T+ +L + L+K+ L
Sbjct: 669 IDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQKECL 703
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 131/308 (42%), Gaps = 27/308 (8%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFG-------LMWELVKEIDELSNGYVSLAAM 169
F W + Y H + +M+ L + + F LM + + +E+ L +
Sbjct: 95 FYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEI 154
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKS 228
S + + + L+ L K V A ++ + I S F+ LI+ K K
Sbjct: 155 SGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKV 214
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
A+ + ++FQ+ SPD +YT I +CR ++ M ++GC P+ +T + +
Sbjct: 215 REAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 274
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
++ L ++ EAL + E+M + + Y+ Y I++ C
Sbjct: 275 INGLCNEGRVDEALDMLEEMIEKG--IEPTVYT--------------YTLPITALCAIEH 318
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
E A++L ++++ C+P+ +T+ + R+ + + L +ML +G+VP T
Sbjct: 319 EEEAIELVARMKKRGCRPNVQTYT---ALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVT 375
Query: 409 HKMLAEEL 416
+ L EL
Sbjct: 376 YNALINEL 383
>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62670, mitochondrial; Flags: Precursor
gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
Length = 630
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 107/241 (44%), Gaps = 20/241 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D V+++ L KR A+ + K + + I++ +I G CK + D A
Sbjct: 220 DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLF 279
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KEM G P+ V+Y+ I C + L +M E+ P V T + ++ A K
Sbjct: 280 KEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKE 339
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ EA K+Y++M S S++ Y+++I+ C+ A ++
Sbjct: 340 GKLVEAEKLYDEM------VKRSIDPSIV----------TYSSLINGFCMHDRLDEAKQM 383
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ + C PD T+ +K C KR+++GM V REM +G+V T+ +L +
Sbjct: 384 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF---REMSQRGLVGNTVTYNILIQG 440
Query: 416 L 416
L
Sbjct: 441 L 441
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 30/221 (13%)
Query: 203 KFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
KF ISL Q+ + +LI+ +C+ + A + +M + G+ P+ V+ +
Sbjct: 96 KFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLS 155
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ YC K + + +M G +P+ +T ++H L + EA+ + ++M +
Sbjct: 156 SLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAK 215
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
C D + Y +++ C R + A L K+E+ +P +
Sbjct: 216 GCQPD----------------LVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIY 259
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C K M D LNL +EM +KGI P T+ L
Sbjct: 260 NTIIDGLCKYKHMDDA---LNLFKEMETKGIRPNVVTYSSL 297
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 111/266 (41%), Gaps = 23/266 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D S L+D VK + A K++ + K I S + LI+G+C + D A++
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ M PD V+Y I+ +C+ K + +EM ++G + +T I++ L +A
Sbjct: 385 EFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQA 444
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
A +++++M SD + + YNT++ C + A+ +
Sbjct: 445 GDCDMAQEIFKEMVSDGVPPN----------------IMTYNTLLDGLCKNGKLEKAMVV 488
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ ++ +P T+ ++ C +++DG +L + KG+ P + +
Sbjct: 489 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG---WDLFCNLSLKGVKPDVVAYNTMISG 545
Query: 416 LEKKSLGNAKERIDELLTHATEQRTF 441
+K +KE D L E T
Sbjct: 546 FCRKG---SKEEADALFKEMKEDGTL 568
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 26/228 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G+CK ++ + + +EM Q G + V+Y I+ + D KEM
Sbjct: 399 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMV 458
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
G P+++T ++ L K ++ +A+ V+E ++ Y+ +I + KA +
Sbjct: 459 SDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 518
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ YNTMIS C + + A L ++++ED P+ + +
Sbjct: 519 DGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLI 578
Query: 376 KMCCHKKRMKDG--MLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ R++DG L++EM S G ST ++ L L
Sbjct: 579 -----RARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRL 621
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 14/161 (8%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+Q G + TYN +++ L ++ + E+ KE+ VS +M
Sbjct: 423 SQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM-------VSDGVPPNIM------TY 469
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L+D L K + A VF + + + ++++I G CK K + +
Sbjct: 470 NTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSL 529
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
G PD V+Y I +CR+ + D KEM+E G P+
Sbjct: 530 KGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 80/194 (41%), Gaps = 14/194 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +++ K K+ E+ +E+ + G V +T ++L+ L +
Sbjct: 398 TYNTLIKGFCKYKRVEEGMEVFREMSQ--RGLVG-----------NTVTYNILIQGLFQA 444
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
A ++F + D + + ++ L+ G CK K + A + + + P +Y
Sbjct: 445 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 504
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
IE C+ + KG KP V+ ++ + EA ++++MK
Sbjct: 505 NIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKE 564
Query: 311 DDCLTDTSFYSSLI 324
D L ++ Y++LI
Sbjct: 565 DGTLPNSGCYNTLI 578
>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04760, chloroplastic; Flags: Precursor
gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 602
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 137/339 (40%), Gaps = 45/339 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ + K +E+V+ ++ L D + ++L+ L+ +
Sbjct: 265 TYNTIIRGMCKEGMVDRAFEMVRNLE--------LKGCEP-----DVISYNILLRALLNQ 311
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
K+ K F + + + +LI C+ K + A +K M + G +PD SY
Sbjct: 312 GKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSY 371
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I +CRE L+ M GC P ++ V+ L K + +AL+++ K+
Sbjct: 372 DPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGE 431
Query: 311 DDCLTDTSFYSSLIFIL---SKAVRFL----------------IYNTMISSACVRSEEGN 351
C ++S Y+++ L +R L YN+MIS C
Sbjct: 432 VGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDE 491
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A +L + P T+ L C R++D +N++ M+ G P E+T+ +
Sbjct: 492 AFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDA---INVLESMVGNGCRPNETTYTV 548
Query: 412 LAEEL-------EKKSLGNAKERIDELLTHATEQ--RTF 441
L E + E L N RID + ++ ++ RTF
Sbjct: 549 LIEGIGFAGYRAEAMELANDLVRIDAISEYSFKRLHRTF 587
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 22/217 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI+G+CK + D A + + M FSPD V+Y I C L ++
Sbjct: 161 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL 220
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
C+P+VIT TI++ A + EALK+ ++M S D Y+++I + K
Sbjct: 221 SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVD 280
Query: 330 ----AVR----------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
VR + YN ++ + + + KL K+ + C P+ T++ +
Sbjct: 281 RAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILI 340
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C ++++ M +L LM+E KG+ P ++ L
Sbjct: 341 TTLCRDGKIEEAMNLLKLMKE---KGLTPDAYSYDPL 374
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 20/204 (9%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
+ H C++ + ++ M + G++PD + T I+ + ++ K + E+ EK
Sbjct: 95 IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKA-VRVMEILEKF 153
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337
+P V +++ K +I +A +V ++M+S D DT + YN
Sbjct: 154 GQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDT----------------VTYN 197
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
MI S C R + ALK+ ++ D+C+P T+ ++ + + + L LM EM
Sbjct: 198 IMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEA---LKLMDEM 254
Query: 398 LSKGIVPQESTHKMLAEELEKKSL 421
LS+G+ P T+ + + K+ +
Sbjct: 255 LSRGLKPDMFTYNTIIRGMCKEGM 278
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 23/218 (10%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LI G+ R A + M+ + + G PD +Y I +C+ L M+ K
Sbjct: 130 LIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKD 188
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------------- 324
P +T I++ +L ++ ALKV ++ SD+C Y+ LI
Sbjct: 189 FSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEAL 248
Query: 325 ----FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+LS+ ++ YNT+I C A ++ + +E C+PD ++ L+
Sbjct: 249 KLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRAL 308
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ + ++G LM +M S+ P T+ +L L
Sbjct: 309 LNQGKWEEGE---KLMTKMFSEKCDPNVVTYSILITTL 343
>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
rugosa]
Length = 414
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 117/280 (41%), Gaps = 33/280 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L + R + D SVL++ K +
Sbjct: 153 KWGLRPSVV-SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKX 211
Query: 195 AHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
A ++F + K + + F LI G CK + D A + K+M SPD ++Y
Sbjct: 212 DDANELFDEMLVKGLVP-NXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNT 270
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I C++ D ++ + + EM KG KP IT T ++ K + A + ++M ++
Sbjct: 271 LIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQEN 330
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
D Y++L IS C +A K+ +++ KPD T+
Sbjct: 331 XRLDEVXYTAL----------------ISGLCXEGRSVDAEKMLREMLSVGLKPDARTYT 374
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C K + G L++EM G VP T+ +L
Sbjct: 375 MIINEFCKKGDVWKGS---KLLKEMQRDGHVPSVVTYNVL 411
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 102/261 (39%), Gaps = 51/261 (19%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
S F++L+H +CK AQ + + G P VSY + Y R D +
Sbjct: 124 SLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 183
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------ 324
M G +P V T +++++ K + +A +++++M + + +++LI
Sbjct: 184 SAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKN 243
Query: 325 -----------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+LS+++ + YNT+I C + + A L ++ KPD T+
Sbjct: 244 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITY 303
Query: 372 ARSLKMCC----------HKKRMKDGMLVLN----------------------LMREMLS 399
+ CC H KRM L+ ++REMLS
Sbjct: 304 TTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLS 363
Query: 400 KGIVPQESTHKMLAEELEKKS 420
G+ P T+ M+ E KK
Sbjct: 364 VGLKPDARTYTMIINEFCKKG 384
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 14/161 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K L+ E MS + D + L+D K
Sbjct: 267 TYNTLIYGLCKKGDLKQAHHLIDE-------------MSXKGLKPDKITYTTLIDGCCKE 313
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A++ + ++ L + LI G C +S A+K ++EM G PD +Y
Sbjct: 314 GDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTY 373
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
T I +C++ D K LKEMQ G PSV+T ++M+
Sbjct: 374 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G CK D A + K M Q D V YT I C E + L+EM
Sbjct: 303 YTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREML 362
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
G KP T T++++ K +++ K+ ++M+ D + Y+ L+
Sbjct: 363 SVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 412
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/198 (19%), Positives = 79/198 (39%), Gaps = 22/198 (11%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+E+ + G+ + + +C++ D R + + G +PSV++ +M+ +
Sbjct: 114 EEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 173
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIF-----------------ILSKAV--RFLIY 336
+ E ++ M + D YS LI +L K + + +
Sbjct: 174 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXF 233
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
T+I C A+++ +++ S PD T+ + C K +K +L+ E
Sbjct: 234 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAH---HLIDE 290
Query: 397 MLSKGIVPQESTHKMLAE 414
M KG+ P + T+ L +
Sbjct: 291 MSXKGLKPDKITYTTLID 308
>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 101/409 (24%), Positives = 168/409 (41%), Gaps = 100/409 (24%)
Query: 87 HETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKF 146
HE+ ++ L KR P + +E F Q G+ H TY ++ L KSKKF
Sbjct: 130 HESAIN-----LIKRETDPQRALEI-----FNRVAEQRGFSHNNATYATILHKLAKSKKF 179
Query: 147 -------------------GLMWELVKEIDELS--NGYVSL--AAMSTVMRRLDTRAMSV 183
G+ L+K +LS V + A V + +A+S
Sbjct: 180 QAIDAVLHQMTYETCKFHEGIFLNLMKHFSKLSLHERVVEMFDAIXPIVREKPSLKAIST 239
Query: 184 LMDTLVKRNS---------VAHAYKVFLKFKDC-ISLSSQI-FDVLIHGWCKTRKSDYAQ 232
++ LV+ N + A++V + K +S + I + LI+G C + + A
Sbjct: 240 CLNLLVESNQSSITAKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAI 299
Query: 233 KAMKEMF-QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ---EKGCKPSVITCTIV 288
+ +EM + PD ++Y I +C KVD LK M+ + GC P+V + +
Sbjct: 300 ELFEEMVSKDQILPDALTYNALINGFCHGX---KVDRALKIMEFMKKNGCNPNVFNYSAL 356
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
M+ K ++ EA +V+++MKS DT Y++LI +A R
Sbjct: 357 MNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRV--------------- 401
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD--GML----------------- 389
A++L + + E+ C+ D T L C + R ++ GML
Sbjct: 402 -DEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLERLPYEGVYLNKASYRI 460
Query: 390 VLN-LMRE------------MLSKGIVPQEST-HKMLAEELEKKSLGNA 424
VLN L RE ML +G++P +T +++L E +G+A
Sbjct: 461 VLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDA 509
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 122/275 (44%), Gaps = 25/275 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
S L++ L + A ++F + KD I + ++ LI+G+C K D A K M+ M
Sbjct: 283 STLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGXKVDRALKIMEFMK 342
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
++G +P+ +Y+ + +C+E + EM+ G KP + T +++ +A ++
Sbjct: 343 KNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVD 402
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMI 340
EA+++ + M + C DT ++ ++ L + RF Y ++
Sbjct: 403 EAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLERLPYEGVYLNKASYRIVL 462
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+S C E A +L + P T L C ++ D ++ L + E+
Sbjct: 463 NSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLGLLEL--- 519
Query: 401 GIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTH 434
G P+ ++ +L E + ++ L A E +D+L+
Sbjct: 520 GFKPEPNSWALLVELICRERKLLPAFELLDDLVIQ 554
>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
Length = 676
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 113/255 (44%), Gaps = 22/255 (8%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+D L K + A+++FLK S + + V+I G+CK K A+ + M +
Sbjct: 292 LIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQ 351
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G +P+ +YT I +C+ F + + +M+ +G P++ T ++ K +I EA
Sbjct: 352 GLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEA 411
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
KV S D + Y +I+ C + AL L +++ E
Sbjct: 412 YKVLRMATSQGLHLDK----------------VTYTILITEHCKQGHITCALDLFKQMAE 455
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH-KMLAEELEKKS 420
SC PD T+ + M C +++M+ L + LS G+VP + T+ M+A
Sbjct: 456 KSCHPDIHTYTTIIAMYCQQRQME---QSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGK 512
Query: 421 LGNAKERIDELLTHA 435
L +A + + ++ H
Sbjct: 513 LTSALKVFERMVQHG 527
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 109/240 (45%), Gaps = 20/240 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
+T + L+ K S A+++ K K + + ++ +I G+CK K A K +
Sbjct: 356 NTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVL 415
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ G D V+YT I +C++ K+M EK C P + T T ++ +
Sbjct: 416 RMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQ 475
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+Q+ ++ ++++K CL S+ + +K Y +MI+ C + +ALK+
Sbjct: 476 RQMEQSQQLFDK-----CL-------SIGLVPTKQT----YTSMIAGYCRLGKLTSALKV 519
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+++ + C PD T+ + C + R+++ L ML K +VP + T LA E
Sbjct: 520 FERMVQHGCLPDSITYGALISSLCKESRLEEAR---ALFETMLDKHLVPCDVTRVTLAYE 576
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 86/228 (37%), Gaps = 27/228 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F L+ G C+ + + A + M+ GF D + T + +CR+ FR V + M
Sbjct: 184 FRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTDLFRRMS 243
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
E G P+++ + + L + + +A V E+M + ++SLI L K
Sbjct: 244 EMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWME 303
Query: 330 -AVRFLI--------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
A R + Y MI C + A L ++ E P+ T+
Sbjct: 304 RAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTL 363
Query: 375 LKMCCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ C K G LM +M +G +P T+ + KK
Sbjct: 364 IHGHC-----KGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKG 406
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 24/178 (13%)
Query: 204 FKDCISL----SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR 259
F C+S+ + Q + +I G+C+ K A K + M QHG PD ++Y I C+
Sbjct: 485 FDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCK 544
Query: 260 EKDFRKVDYTLKEMQEKGCKPSVIT-------------CTIV---MHALEKAKQIYEALK 303
E + + M +K P +T TI + L+K +Q + A
Sbjct: 545 ESRLEEARALFETMLDKHLVPCDVTRVTLAYEYCRRDKITIAVSFLDRLDKRQQAHTADA 604
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
+ K+ + L S + + AV Y + I+S E N L +I E
Sbjct: 605 LVRKLSTVGNLDAASLFLKNVLDKHYAVDHATYTSFINSC----YESNRYALASEISE 658
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 83/211 (39%), Gaps = 26/211 (12%)
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD S+ + CRE F + D L M +G TCT+V+ A + +
Sbjct: 176 GVRPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNV 235
Query: 302 LKVYEKMKSDDCLTDTSFYSSLI-----------------FILSKAVRFLIY--NTMISS 342
++ +M + YS+ I ++ K ++ +Y ++I
Sbjct: 236 TDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDG 295
Query: 343 ACVRSEEGNALKLRQK-IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C A +L K ++ S KP+ T+ + C + ++ ++L M+ +G
Sbjct: 296 LCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLG---RMVEQG 352
Query: 402 IVPQESTHKMLAEELEKKSLGNAKERIDELL 432
+ P +T+ L + G + +R EL+
Sbjct: 353 LAPNTNTYTTL---IHGHCKGGSFDRAFELM 380
>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Glycine max]
Length = 642
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/353 (19%), Positives = 151/353 (42%), Gaps = 37/353 (10%)
Query: 81 HALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEAL 140
H + + ++K ++ K Y +A+ F W + Q T +++N+++ +
Sbjct: 85 HQMKRERRVFLEKNFIVMFKAYGKAHLPEKAVDLFHRMWGEFQCK--QTVKSFNSVLNVI 142
Query: 141 GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKV 200
+ F E Y + A ++ + ++++ + + V A +V
Sbjct: 143 VQEGLFNRALEF----------YNHVVASKSLNIHPNALTFNLVIKAMCRLGLVDKAIEV 192
Query: 201 F--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258
F + ++C + + + L+HG CK + D A + EM G P+ V++ I C
Sbjct: 193 FREIPLRNC-APDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALC 251
Query: 259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318
++ D + + M KGC P+ +T ++H L ++ +A+ + +M S+ C+ +
Sbjct: 252 KKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDV 311
Query: 319 FYSSLI--FIL----SKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKI 359
+ +LI F++ S R L +Y+++IS C + A++L +++
Sbjct: 312 TFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEM 371
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C P+ ++ + C + ++ + + EM +KG +P T+ L
Sbjct: 372 VGKGCGPNTIVYSALIDGLCREGKLDEAR---GFLSEMKNKGYLPNSFTYSSL 421
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 114/251 (45%), Gaps = 27/251 (10%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ LI G CK K + A + KEM G P+ + Y+ I+ CRE + L EM
Sbjct: 347 VYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEM 406
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+ KG P+ T + +M +A ++A+ V+++M +++C+ + YS LI L K +F
Sbjct: 407 KNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKF 466
Query: 334 L-------------------IYNTMISSACVRSEEGNALKLRQKI--EEDSCKPDCETHA 372
+ Y++MI C + LKL ++ + +PD T+
Sbjct: 467 MEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYN 526
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK--KSLGNAKERIDE 430
L C +K + + +LN+ ML +G P T + + L + + +E +DE
Sbjct: 527 ILLNAFCIQKSIFRAIDILNI---MLDQGCDPDFITCDIFLKTLRENMNPPQDGREFLDE 583
Query: 431 LLTHATE-QRT 440
L+ + QRT
Sbjct: 584 LVVRLVKRQRT 594
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/317 (20%), Positives = 133/317 (41%), Gaps = 47/317 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL----DTRAMSVLMDT 187
TY+ ++ L K ++ L+ E+ ++ + +L A + ++ L D + L+D
Sbjct: 207 TYSTLMHGLCKEERIDEAVSLLDEM-QVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDN 265
Query: 188 L---------VKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRK 227
+ V N++ H + K + +SL +Q+ F LI+G+ +
Sbjct: 266 MFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGR 325
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
+ + + + G + Y+ I C+E F + KEM KGC P+ I +
Sbjct: 326 ASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSA 385
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV----RFLIYNTMISSA 343
++ L + ++ EA +MK+ L ++ YSSL+ +A L++ M ++
Sbjct: 386 LIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNN 445
Query: 344 CVRSE------------EGN---ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
C+ +E +G AL + +++ K D ++ + C+ ++ G
Sbjct: 446 CIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQG- 504
Query: 389 LVLNLMREMLSKGIVPQ 405
L L +ML +G V Q
Sbjct: 505 --LKLFNQMLCQGPVVQ 519
>gi|255661028|gb|ACU25683.1| pentatricopeptide repeat-containing protein [Citharexylum
montevidense]
Length = 376
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 121/289 (41%), Gaps = 40/289 (13%)
Query: 132 TYNAMVEAL---GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL 188
YNAM+ G+ K +WEL+ G ++A+ +T+MR L
Sbjct: 27 VYNAMLNGFFKAGRIKNCFDLWELMGR-----EGSRNVASFNTMMR------------GL 69
Query: 189 VKRNSVAHAYKVFLKFKDCISL-SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
V + ++ K+ + S + +L+HG+CK ++ + ++ Q G + D
Sbjct: 70 FNNGEVDEVFSIWELMKESGFVEDSTTYGILVHGFCKNGYNNKSLHVLEIAKQEGGALDA 129
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+Y+ I C+ K L M E GCKP+ +++ L A + +A++V+++
Sbjct: 130 FAYSAMISGLCKMGKLDKAVSVLNGMIESGCKPNTQVYNALINGLLGASKFEDAIRVFKE 189
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
+ + C + + YNT+I+ C A L +++ E P
Sbjct: 190 LGTRHC----------------SPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWNPS 233
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
T++ +K C +++ + L L +++SKG P H +L L
Sbjct: 234 VITYSLLIKGLCQDHKVE---MALQLWNQVISKGFKPDVQMHNILIHGL 279
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 122/284 (42%), Gaps = 35/284 (12%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
Q G Y+AM+ L K M +L K + L NG + + +T+ +
Sbjct: 122 QEGGALDAFAYSAMISGLCK------MGKLDKAVSVL-NGMIESGC------KPNTQVYN 168
Query: 183 VLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L++ L+ + A +VF L + C S + ++ LI+G CK + A +KEM +
Sbjct: 169 ALINGLLGASKFEDAIRVFKELGTRHC-SPTIVTYNTLINGLCKGERFAEAYDLVKEMLE 227
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G++P ++Y+ I+ C++ ++ KG KP V I++H L +
Sbjct: 228 KGWNPSVITYSLLIKGLCQDHKVEMALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTEH 287
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A ++Y M +C A + YNT++ + NAL + +I
Sbjct: 288 ASELYFDMNHWNC----------------APNLVTYNTLMEGFYKGGDTRNALVIWARIL 331
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ PD ++ +LK C R+ +L LN + ++K IVP
Sbjct: 332 RNGLLPDIISYNITLKGLCACNRISVAILFLN---DAVTKNIVP 372
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 91/230 (39%), Gaps = 24/230 (10%)
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
C++ + A++ KEM + SPD V Y + + + + + L E+ + +V
Sbjct: 1 CESGAINAAERVYKEMAESKISPDAVVYNAMLNGFFKAGRIKNC-FDLWELMGREGSRNV 59
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------------- 329
+ +M L ++ E ++E MK + D++ Y L+ K
Sbjct: 60 ASFNTMMRGLFNNGEVDEVFSIWELMKESGFVEDSTTYGILVHGFCKNGYNNKSLHVLEI 119
Query: 330 ------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
A+ Y+ MIS C + A+ + + E CKP+ + + + +
Sbjct: 120 AKQEGGALDAFAYSAMISGLCKMGKLDKAVSVLNGMIESGCKPNTQVYNALINGLLGASK 179
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK-KSLGNAKERIDELL 432
+D + V +E+ ++ P T+ L L K + A + + E+L
Sbjct: 180 FEDAIRVF---KELGTRHCSPTIVTYNTLINGLCKGERFAEAYDLVKEML 226
>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Cucumis sativus]
Length = 637
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 147/370 (39%), Gaps = 58/370 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA + + H TY A++ L +S MW ++++ S V A S +++ L
Sbjct: 111 FKWAGKRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIR-SPCSVGPAEWSEILKIL 169
Query: 177 D-----TRAMSVLMDTLVKR-NSVAHAYKVFLKF--------------------KDCISL 210
+A+SV ++ N A Y + +C S
Sbjct: 170 GKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNC-SP 228
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
+ + LI + K + D+A + EM ++G P YT + Y + +
Sbjct: 229 DTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLV 288
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
+EM+ KGC P+V T T ++ L K ++ +A ++ M D C D ++LI IL +A
Sbjct: 289 EEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRA 348
Query: 331 VRF-------------------LIYNTMISSAC-VRSEEGNALKLRQKIEEDSCKPDCET 370
R + YNT+I + ++ A +K++ + P T
Sbjct: 349 GRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFT 408
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAK--ERI 428
+A + C R++ +L L+ EM KG P + + L + SLG AK E
Sbjct: 409 YAILIDGFCKTNRVEKALL---LLEEMDEKGFPPCPAAYCSLID-----SLGRAKRYEAA 460
Query: 429 DELLTHATEQ 438
+EL E
Sbjct: 461 NELFQELKEN 470
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 112/250 (44%), Gaps = 21/250 (8%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
G + TY +++ K+ + L++E+DE G+ A A
Sbjct: 400 NGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDE--KGFPPCPA-----------AYCS 446
Query: 184 LMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+D+L + A ++F + K +C S++++ V+I + + A EM + G
Sbjct: 447 LIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLG 506
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
SPD +Y + R + ++ M+E GC P + + I+++ L K A+
Sbjct: 507 CSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAI 566
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA------LKLR 356
+++ KMK + + D Y++++ LS+A F + ++ ++ E ++ L+
Sbjct: 567 EMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEAV 626
Query: 357 QKIEEDSCKP 366
K++ED C P
Sbjct: 627 GKVDED-CSP 635
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 16/166 (9%)
Query: 206 DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
+ I+ SS + +LI G+CKT + + A ++EM + GF P +Y I+ R K +
Sbjct: 400 NGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEA 459
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
+ +E++E + S +++ ++ +A+ ++ +MK C D Y++L+
Sbjct: 460 ANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALM- 518
Query: 326 ILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
+ MI + + A L + + E+ C PD ++H
Sbjct: 519 -----------SGMIRAGMI----DEAHSLMRNMRENGCTPDIKSH 549
>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 418
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 128/310 (41%), Gaps = 36/310 (11%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W +E L GY + ++LM VK
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWGFYEE--NLECGYPA-----------SLYFFNILMHGFVK 148
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A VF K + S F+ L++G+ K + + M G PD +
Sbjct: 149 EGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYT 208
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+ I C+E + EM +KG P+ +T T ++ K ++ A+++Y++M
Sbjct: 209 YSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 268
Query: 310 SDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEG 350
S D Y++LI+ L K + Y T+I C +
Sbjct: 269 SQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLE 328
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A + R+++ +++ + D + + C + R D ++REMLS G+ P+ T+
Sbjct: 329 TAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLKPEIGTYT 385
Query: 411 MLAEELEKKS 420
M+ E KK
Sbjct: 386 MIINEFCKKG 395
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 89/388 (22%), Positives = 152/388 (39%), Gaps = 60/388 (15%)
Query: 51 TQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVE 110
TQ D + +++ES L + I + L+++H+ R + + KV+E
Sbjct: 61 TQRSDIYVFSGLITAYLESGFLRDA--IECYRLTKEHK---------FRVPFDTCRKVLE 109
Query: 111 ---ALKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM---------WEL-- 152
LK F W + GY + +N ++ K + L W L
Sbjct: 110 HLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRP 169
Query: 153 -VKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVF 201
V + L NGY+ L ++ R + D SVL++ L K + + A +F
Sbjct: 170 SVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLF 229
Query: 202 LKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
+ D + + F LI G CK + D A + K+M SPD ++Y I C++
Sbjct: 230 DEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 289
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
D ++ + EM KG KP IT T ++ K + A + ++M ++ D Y
Sbjct: 290 GDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
++L IS C +A K+ +++ KP+ T+ + C
Sbjct: 350 TAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQEST 408
K + G L++EM G P T
Sbjct: 394 KGDVWTGS---KLLKEMQRDGYKPSVVT 418
>gi|449436631|ref|XP_004136096.1| PREDICTED: uncharacterized protein LOC101205322 [Cucumis sativus]
Length = 1559
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 152/355 (42%), Gaps = 45/355 (12%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F W +++ + HT ETYN M++ LGK +F L W L+ + + + A + +R
Sbjct: 619 FNWVESECKFDHTTETYNRMLDILGKFFEFDLSWVLINRMRQSPSASPDHATFRILFKRY 678
Query: 177 ----------------------DTRAMSVLMDTLVKRNSVAHAYKV-FLKFK--DCISLS 211
D + L+D L + V A ++ F K + DC S S
Sbjct: 679 ALAHLVSEAIAAYERLREFKLRDETSFCNLIDALCESRHVDEAQELCFGKNRKLDCDS-S 737
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
++I ++++ GW K + +EM + G D SY+ +++ C+ K K
Sbjct: 738 TKIHNLILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYK 797
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
EM++KG K V+ V+HA+ ++ + A +V+ +MK C + +++I + +
Sbjct: 798 EMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCENG 857
Query: 332 RF----LIYNTMISSAC----------VRSEE--GNALKLRQKIEEDSCKPDCETHARSL 375
RF ++ + M+ C RS E L L ++ + P +T+ L
Sbjct: 858 RFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYVMLL 917
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDE 430
+ ++ LV N M E+ G P E + L + L +K + + + DE
Sbjct: 918 RKFGRWGFLRPVFLVWNKMEEL---GCSPNECAYNALIDALVEKGMIDMARKYDE 969
>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
Length = 331
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 111/242 (45%), Gaps = 32/242 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L K+ + +EL KE+ GYV + + L+D K+
Sbjct: 81 TYNTLINGLCKAWRIETAYELFKEM--AGKGYVPTEV-----------SYNTLIDGFCKK 127
Query: 192 NSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A VF K +C+ + + LI G K+ K A + + M + G +P+ +
Sbjct: 128 KDLVAAKDVFDKMVRSNCVP-NVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT 186
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+C I+ +C+ + + L++M +G P+V+T I++++L +A ++ +A K++ M
Sbjct: 187 YSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMA 246
Query: 310 SDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
C + +++ YNT++ + C + A +L ++ C PD
Sbjct: 247 QRRC------HPTVV----------TYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAI 290
Query: 370 TH 371
T+
Sbjct: 291 TY 292
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 14/207 (6%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
GY+ T +YN +++ K K +LV D S + V + L
Sbjct: 109 GYVPTEVSYNTLIDGFCKKK------DLVAAKDVFDKMVRSNCVPNVV-------TYTTL 155
Query: 185 MDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D L K V A +V K ++ + + LI G+CK R+ D A K +++M G
Sbjct: 156 IDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGI 215
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+P V+Y + CR + M ++ C P+V+T ++ AL KQ+ A +
Sbjct: 216 APTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHR 275
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKA 330
+Y +M + C D Y +L + L++A
Sbjct: 276 LYAEMIAKGCPPDAITYDTLAWGLTRA 302
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 19/203 (9%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I++ ++ G C+ K + A+ ++M + +P+ V+Y I C+ KEM
Sbjct: 46 IYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEM 105
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
KG P+ ++ ++ K K + A V++KM +C+ + Y++LI LSK
Sbjct: 106 AGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSK---- 161
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
S V++ A ++ + + P+ T++ + C +R+ + L
Sbjct: 162 --------SGKVQA----AAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAH---KL 206
Query: 394 MREMLSKGIVPQESTHKMLAEEL 416
+ +M+++GI P T+ +L L
Sbjct: 207 LEQMVTQGIAPTVVTYNILLNSL 229
>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 594
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 135/329 (41%), Gaps = 39/329 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G T TYN+++ + S ++ L KE+ E + + D S+L
Sbjct: 274 GISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWN-------------MKPDVVTFSIL 320
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
+D L K V A VF K I++ I + LIHG CK+ + + EM
Sbjct: 321 VDALCKEGVVLEALSVFGKMIQ-IAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRN 379
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
PD V+++ +++ +C++ + + M E+G +P+V+T +M Q+ EA
Sbjct: 380 IRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEAR 439
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSA 343
KV++ M + C D Y+ LI K+ R + + T+IS
Sbjct: 440 KVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGL 499
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C A +L +K+ C PD T++ L C + + + + +++ K
Sbjct: 500 CQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLK--- 556
Query: 404 PQESTHKMLAEELEKKS-LGNAKERIDEL 431
P K+L + K L +AKE L
Sbjct: 557 PNHVICKILLGGMCKAGKLEDAKELFSSL 585
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/350 (21%), Positives = 148/350 (42%), Gaps = 40/350 (11%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL 166
++VEA++ + ++ GY T T+ +V L K I + S V +
Sbjct: 189 RIVEAMEQLDYIMSR---GYQPTVYTHTMIVNGLCK-------------IGKTSAAIVWM 232
Query: 167 AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKT 225
M + + + S+++D+L K V A +F + IS + ++ LI+G C +
Sbjct: 233 KKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNS 292
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
+ A KEM + PD V+++ ++ C+E + +M + +P ++T
Sbjct: 293 GQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTY 352
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS----------------SLI-FILS 328
+ ++H + K+ E+ + +M S + D +S S+I ++
Sbjct: 353 SSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIE 412
Query: 329 KAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
+ +R + YN+++ C+ S+ A K+ + C PD ++ +K C +R+ +
Sbjct: 413 RGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDE 472
Query: 387 GMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
L EM KG+ P TH L L + AKE ++ +H
Sbjct: 473 AK---QLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHG 519
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/279 (18%), Positives = 110/279 (39%), Gaps = 57/279 (20%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE------- 260
+S S +LI+ C + ++F+ GF P +++ I C E
Sbjct: 135 VSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAM 194
Query: 261 --------KDFRKVDYT--------------------LKEMQEKGCKPSVITCTIVMHAL 292
+ ++ YT +K+M E C+P V++ +I++ +L
Sbjct: 195 EQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSL 254
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------------- 333
K + + EA+ ++ M+S Y+SLI+ + + ++
Sbjct: 255 CKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDV 314
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+ ++ ++ + C AL + K+ + + +PD T++ + C K+ +LN
Sbjct: 315 VTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLN- 373
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
EMLS+ I P T + + KK + + + I L+
Sbjct: 374 --EMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLM 410
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LI G C+ + A++ K+M HG PD ++Y+ + +C+ + + +++
Sbjct: 495 LISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQ 554
Query: 278 CKPSVITCTIVMHA------LEKAKQIYEALKVYEKMKSD 311
KP+ + C I++ LE AK+++ +L + E+++ D
Sbjct: 555 LKPNHVICKILLGGMCKAGKLEDAKELFSSLSI-EELQPD 593
>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
Length = 941
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 114/257 (44%), Gaps = 23/257 (8%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L++ K V+ A +V K I + + + +LI+G+ K + A +++ + G
Sbjct: 475 LINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDG 534
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
PD V Y I+ +C + + + +KEMQ++ C+P+ T ++H +A ++ AL
Sbjct: 535 LKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRAL 594
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFIL------SKAVRFL-------------IYNTMISSA 343
++++ M+ C+ +++L+ L KAV L Y T++
Sbjct: 595 EIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGY 654
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
+ G A + K+ + + D T+ LK CC RM+ + V REM ++ I
Sbjct: 655 AALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAV---TREMNAQKIP 711
Query: 404 PQESTHKMLAEELEKKS 420
+ +L + ++
Sbjct: 712 RNTFVYNILIDGWARRG 728
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 131/297 (44%), Gaps = 51/297 (17%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI-------DE-----LSNGYVSLAAMS 170
++G + T T+NA+V L + +K E++ E+ DE + +GY +L
Sbjct: 602 RSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTG 661
Query: 171 ------TVMR----RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLI 219
T MR +LD L+ K + A V + I ++ ++++LI
Sbjct: 662 KAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILI 721
Query: 220 HGWCKTRKSDYAQKA--MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
GW R+ D + A M++M Q G PD +YT FI C+ D + T++EM+ G
Sbjct: 722 DGWA--RRGDIWEAADLMQQMNQEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAG 779
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF-ILSKA--VRFL 334
KP+V T T ++H A +AL +E++K D + Y L+ +LS+A
Sbjct: 780 VKPNVKTYTTLIHGWANASLPEKALSCFEELKLAGLKPDKAVYHCLMTSLLSRATVAEAY 839
Query: 335 IYNTMIS--------------------SACVRSEEGNALKLRQKIEEDSCKPDCETH 371
IY+ ++S S C+R E +L Q +++ + PD TH
Sbjct: 840 IYSGILSICREMIEFELTVDMGTAVYWSKCLRKIERIGGELTQTLQK-TFPPDWNTH 895
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 101/249 (40%), Gaps = 22/249 (8%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQ 232
R +R ++ + + A ++F ++ CI + F+ L+ G + RK + A
Sbjct: 571 RPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIP-TVHTFNALVLGLVEKRKMEKAV 629
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ + EM G SPD +YT + Y D K +M+ +G + V T ++ A
Sbjct: 630 EILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKAC 689
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA 352
K+ ++ AL V +M + +T +YN +I R + A
Sbjct: 690 CKSGRMQSALAVTREMNAQKIPRNT----------------FVYNILIDGWARRGDIWEA 733
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
L Q++ ++ +PD T+ + CC + D + M EM + G+ P T+ L
Sbjct: 734 ADLMQQMNQEGVQPDIHTYTSFINACC---KAGDMLRATKTMEEMEAAGVKPNVKTYTTL 790
Query: 413 AEELEKKSL 421
SL
Sbjct: 791 IHGWANASL 799
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 82/363 (22%), Positives = 147/363 (40%), Gaps = 64/363 (17%)
Query: 130 PETYNAMVEALGKSKK-----FGLMWEL------------------VKEIDELSNGYVSL 166
PE + A+V A + KK FGLM + ID S+ Y SL
Sbjct: 276 PENWQAVVSAFERIKKPSRREFGLMVGYYARRGDMHRARQTFESMRARGIDPSSHVYTSL 335
Query: 167 AAMSTVMRRLD-----TRAM------------SVLMDTLVKRNSVAHAYKVFLKFKD-CI 208
V R ++ R M S+++ K + A F K K+
Sbjct: 336 IHAYAVGRDMEEALSCVRKMNEEGIEMSLVTYSIVVGGFAKFGNAEAADCWFKKAKERHT 395
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
+L++ I+ +I+ +C+ D A+ ++EM + G Y ++ Y ++ K
Sbjct: 396 NLNAYIYGNIIYAYCQACNMDRAEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLI 455
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---- 324
K ++E G PSVIT +++ K ++ +AL+V + MKS + YS LI
Sbjct: 456 VFKRLKECGFAPSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFL 515
Query: 325 --------FILSKAV-------RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
F + + V ++YN +I + C A+ + ++++++ C+P
Sbjct: 516 KLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSR 575
Query: 370 THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERI 428
T + M+ + + ++MR G +P T L L EK+ + A E +
Sbjct: 576 TFMPIIHGFARAGEMRRALEIFDMMRR---SGCIPTVHTFNALVLGLVEKRKMEKAVEIL 632
Query: 429 DEL 431
DE+
Sbjct: 633 DEM 635
>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 114/254 (44%), Gaps = 23/254 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L+D K + AYK+F + + I S F LI G + K A K EM +
Sbjct: 219 TTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIK 278
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
GF PD V+YT I+ YC+ + +K + +M + G P+V+T T + L K+ ++
Sbjct: 279 KGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDT 338
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-------------------IYNTMIS 341
A ++ +M + S Y++++ L KA L Y T++
Sbjct: 339 ANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMD 398
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
+ E A +L +++ + +P T + C +++DG L++ ML KG
Sbjct: 399 AYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGE---RLLKWMLEKG 455
Query: 402 IVPQESTHKMLAEE 415
I+P +T+ + ++
Sbjct: 456 IMPNAATYNSIMKQ 469
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 143/323 (44%), Gaps = 36/323 (11%)
Query: 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLV 189
P ++ + L ++ GL+ E K D+L N V+L+A S L +S
Sbjct: 39 PHVFDVFFQVLVEA---GLLNEARKFFDKLLNYGVALSAGSC---NLYLTCLSS------ 86
Query: 190 KRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
KR+ + KVF +F + +++ +++L++ + K A + M G PD V
Sbjct: 87 KRDMLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVV 146
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
SYT I+ YC + +KV +KEMQ KG KP++ T + ++ L K+ ++ E KV +M
Sbjct: 147 SYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREM 206
Query: 309 KSDDCLTDTSFYSSLIFILSK--------------AVRFLIYNTMISSA--CVRSEEGNA 352
D Y++LI K R ++ +++ SA C S G
Sbjct: 207 MKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKV 266
Query: 353 L---KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
+ KL ++ + +PD T+ + C MK + N +M+ G+ P T+
Sbjct: 267 VEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHN---QMVQIGLTPNVVTY 323
Query: 410 KMLAEELEKKS-LGNAKERIDEL 431
LA+ L K L A E + E+
Sbjct: 324 TALADGLCKSGELDTANELLHEM 346
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 145/337 (43%), Gaps = 51/337 (15%)
Query: 104 SPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEA---LGKSKKFGLMWELVKEIDELS 160
KVVEA K F + G+ TY A+++ LG+ KK L
Sbjct: 262 GSGKVVEADKLFN---EMIKKGFEPDEVTYTALIDGYCKLGEMKKAFF----------LH 308
Query: 161 NGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLI 219
N V + V+ + L D L K + A ++ + + + L+ ++ ++
Sbjct: 309 NQMVQIGLTPNVV------TYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIV 362
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
+G CK A K M+EM + G PD ++YT ++ Y + + K L+EM ++G +
Sbjct: 363 NGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQ 422
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTM 339
P+V+T ++M+ L + ++ + ++ + M + + + YN++
Sbjct: 423 PTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAA----------------TYNSI 466
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCK----PDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
+ C+R N +++ +I C PD T+ +K C + MK+ L +
Sbjct: 467 MKQYCIR----NNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWF---LHK 519
Query: 396 EMLSKGIVPQESTHKMLAEE-LEKKSLGNAKERIDEL 431
EM+ K S++ L + ++K L A++ +E+
Sbjct: 520 EMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEM 556
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/306 (18%), Positives = 111/306 (36%), Gaps = 70/306 (22%)
Query: 89 TDVDKVSEILRKRYPSPDKVV------------EALKCFCFTWAKTQTGYMHTPETYNAM 136
+ DK+ + K+ PD+V E K F Q G TY A+
Sbjct: 267 VEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTAL 326
Query: 137 VEALGKSKKFGLMWELVKEI------------DELSNGYVSLAAMSTVMRRL-------- 176
+ L KS + EL+ E+ + + NG + ++ +
Sbjct: 327 ADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGL 386
Query: 177 --DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQK 233
DT + LMD K + A ++ + D + + F+VL++G C + K + ++
Sbjct: 387 HPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGER 446
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM---- 289
+K M + G P+ +Y ++ YC + R + M +G P T I++
Sbjct: 447 LLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHC 506
Query: 290 ---------------------------HALEKA----KQIYEALKVYEKMKSDDCLTDTS 318
+AL K K++ EA +++E+M+ + +
Sbjct: 507 KARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAE 566
Query: 319 FYSSLI 324
Y+ +
Sbjct: 567 IYNLFV 572
>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 772
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 25/227 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++V +H C+ + A ++ M G PD V+YT I + + RK EM
Sbjct: 498 YNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEML 557
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYE-ALKVYEKMKSDDCLTDTSFYSSLIFILSKAV-- 331
KG PSV+T T+++HA AKQ+ + A + KM L K+V
Sbjct: 558 SKGVAPSVVTYTVLIHA-HAAKQMLDLAFMYFSKM------------------LEKSVPA 598
Query: 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+ YN +I+ C+ A K ++EE P+ ++ + C+ ++ L
Sbjct: 599 NVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEA---L 655
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQ 438
L REML + I P TH + + L + +A + ++ L+ + +
Sbjct: 656 RLYREMLDRKIQPDSFTHSVFLKNLHRDYQVHAVQCVESLIQNVEDN 702
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 136/327 (41%), Gaps = 39/327 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRLDTRAMSVLMDTLVK 190
TYN +V L K + L++E+ L++G VS + ++ + + V LV+
Sbjct: 252 TYNVLVNGLSKKGELEQAKGLIEEM--LNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVE 309
Query: 191 RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
A+ +LS+ ++ L++G CK + + +M + F+PD VS+
Sbjct: 310 EMVNRRAFP---------TLST--YNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSF 358
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ YCR + E++ + P+VIT ++H L + AL++ ++M
Sbjct: 359 NSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTD 418
Query: 311 DDCLTDTSFYSSLIF-----------------ILSKAV---RFLIYNTMISSACVRSEEG 350
D Y+ L+ +LSK + RF YNT I ++
Sbjct: 419 QGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRF-AYNTRIVGEMKIADTS 477
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A +++++ PD T+ + C + ++ +L+ M+S G++P T+
Sbjct: 478 VAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEA---CDLLENMVSDGLIPDHVTYT 534
Query: 411 MLAEELEKKS-LGNAKERIDELLTHAT 436
+ K L A+E +E+L+
Sbjct: 535 SIINGFVKNGHLRKAREVFNEMLSKGV 561
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%)
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A+ M Q G P V+Y ++ YC+E + L EMQE+GC P+ +T ++++
Sbjct: 199 AKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVN 258
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
L K ++ +A + E+M + Y+ LI
Sbjct: 259 GLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLI 292
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/364 (18%), Positives = 133/364 (36%), Gaps = 75/364 (20%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEAL-GKSKKFGLMW--------ELVKEIDELSNGYVS-L 166
F W Q + + + A+++ L G W E+ +D L G+V L
Sbjct: 106 FRWVMAQPDFKESEFVFCAILDILVGNDLMHAAYWVMERVVSFEMHGVVDVLIAGHVXCL 165
Query: 167 AAMSTVMRR---LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGW 222
++R D + + ++ L N ++ A V+ + I + ++ ++ +
Sbjct: 166 LVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSY 225
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
CK + D A + + EM + G P+ V+Y + ++ + + ++EM G S
Sbjct: 226 CKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSA 285
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR---------- 332
T +++ + EA + E+M + S Y++L++ L K V+
Sbjct: 286 YTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSD 345
Query: 333 -----------------------------FLI---------------YNTMISSACVRSE 348
FL+ YNT+I C+
Sbjct: 346 MLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGY 405
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL--NLMREMLSKGIVPQE 406
AL+L++++ + PD T+ + C K G + + EMLSKG+ P
Sbjct: 406 LDAALRLKKEMTDQGLFPDIFTYTILVNGC-----FKLGYVSMARGFFNEMLSKGLKPDR 460
Query: 407 STHK 410
+
Sbjct: 461 FAYN 464
>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 822
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 117/270 (43%), Gaps = 24/270 (8%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ L++ L K+ V A + + F+ +S + LI G C+ R D A M
Sbjct: 201 FNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMV 260
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ G P+ V+Y+ I C E + L+EM EKG +P+V T T+ + AL +
Sbjct: 261 KEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEE 320
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMI 340
EA+++ +MK C + Y++LI LS+ + + YN +I
Sbjct: 321 EAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALI 380
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+ CV ALK+ +E + +T+ +K C ++ M+ L +ML
Sbjct: 381 NELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMV---LFEKMLKM 437
Query: 401 GIVPQESTHKMLAEE-LEKKSLGNAKERID 429
G +P T+ L L K ++ NA +D
Sbjct: 438 GPLPTVVTYNTLINGYLTKGNVNNAARLLD 467
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 133/319 (41%), Gaps = 47/319 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEAL---GKSKKFGLMWE---------LVKEIDELSNGYV 164
F W + G + +TYN +++ L G +K +++E V + L NGY+
Sbjct: 396 FHWMEGH-GSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYL 454
Query: 165 SLAAMSTVMRRLDTR----------AMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQ 213
+ ++ R LD + L+ K + A F + +C ++ +
Sbjct: 455 TKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPV 514
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ LI G K K D A +K M + G +P+ SY I +E F + + +M
Sbjct: 515 SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 574
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
E+G P+VIT T ++ L + + A K++ M+ CL + YSSLI+ L
Sbjct: 575 VEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGL------ 628
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
+EG A + +++ E C+P +T++ + C K R + L
Sbjct: 629 -------------CQEGKADE-AERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAE---QL 671
Query: 394 MREMLSKGIVPQESTHKML 412
+++M +G P + L
Sbjct: 672 VKDMKERGFCPDREIYYSL 690
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 131/308 (42%), Gaps = 27/308 (8%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFG-------LMWELVKEIDELSNGYVSLAAM 169
F W + Y H + +M+ L + + F LM + + +E+ L +
Sbjct: 95 FYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEI 154
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKS 228
S + + + L+ L K V A ++ + I S F+ LI+ K K
Sbjct: 155 SGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKV 214
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
A+ + ++FQ+ SPD +YT I +CR ++ M ++GC P+ +T + +
Sbjct: 215 REAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 274
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
++ L ++ EAL + E+M + + Y+ Y I++ C
Sbjct: 275 INGLCNEGRVDEALDMLEEMIEKG--IEPTVYT--------------YTLPITALCAIEH 318
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
E A++L ++++ C+P+ +T+ + R+ + + L +ML +G+VP T
Sbjct: 319 EEEAIELVARMKKRGCRPNVQTYT---ALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVT 375
Query: 409 HKMLAEEL 416
+ L EL
Sbjct: 376 YNALINEL 383
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 18/205 (8%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+ G P +Y A+++ K K + L+K ++E+ + +
Sbjct: 505 VECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGC-------------NPNVESY 551
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ +++ L K N + A K+ K + L + I + LI G C+ ++ +A K +M +
Sbjct: 552 NAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEK 611
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
P+ +Y+ I C+E K D + M E GC+P++ T + ++ L + + YE
Sbjct: 612 RKCLPNLYTYSSLIYGLCQEG---KADEA-ERMSEIGCEPTLDTYSTLVSGLCRKGRFYE 667
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIF 325
A ++ + MK D Y SL+
Sbjct: 668 AEQLVKDMKERGFCPDREIYYSLLI 692
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 97/229 (42%), Gaps = 51/229 (22%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
E+YNA++ L K +F E +++ + V + V+ + L+D L +
Sbjct: 549 ESYNAVINGLSKENRF-------SEAEKICDKMVEQGLLPNVI------TYTTLIDGLCR 595
Query: 191 RNSVAHAYKVF--LKFKDCI----SLSSQIFDV--------------------------L 218
A+K+F ++ + C+ + SS I+ + L
Sbjct: 596 NGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAERMSEIGCEPTLDTYSTL 655
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK---EMQE 275
+ G C+ + A++ +K+M + GF PD Y + +C+ + VD+ LK ++
Sbjct: 656 VSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLE---VDHALKIFHSIEA 712
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
KG + + ++ AL KA Q+ EA +++ M + D ++ L+
Sbjct: 713 KGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLV 761
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 14/189 (7%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
++ G T +TY+ +V L + +F +LVK++ E G+ D
Sbjct: 641 SEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKE--RGFCP-----------DREIY 687
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L+ K V HA K+F + L I+ LI CK + + AQ M +
Sbjct: 688 YSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLE 747
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
++ D + +T ++ +E + L M+ K P++ T I+ L + + E
Sbjct: 748 KEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIE 807
Query: 301 ALKVYEKMK 309
+ + +K+K
Sbjct: 808 SEPLADKLK 816
>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 717
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 25/227 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++V +H C+ + A ++ M G PD V+YT I + + RK EM
Sbjct: 498 YNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEML 557
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYE-ALKVYEKMKSDDCLTDTSFYSSLIFILSKAV-- 331
KG PSV+T T+++HA AKQ+ + A + KM L K+V
Sbjct: 558 SKGVAPSVVTYTVLIHA-HAAKQMLDLAFMYFSKM------------------LEKSVPA 598
Query: 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+ YN +I+ C+ A K ++EE P+ ++ + C+ ++ L
Sbjct: 599 NVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEA---L 655
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQ 438
L REML + I P TH + + L + +A + ++ L+ + +
Sbjct: 656 RLYREMLDRKIQPDSFTHSVFLKNLHRDYQVHAVQCVESLIQNVEDN 702
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 47/331 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRLDTRAMSV----LMD 186
TYN +V L K + L++E+ L++G VS + ++ + + V L++
Sbjct: 252 TYNVLVNGLSKKGELEQAKGLIEEM--LNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVE 309
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
+V R + +LS+ ++ L++G CK + + +M + F+PD
Sbjct: 310 EMVNRRAFP-------------TLST--YNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPD 354
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
VS+ + YCR + E++ + P+VIT ++H L + AL++ +
Sbjct: 355 IVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKK 414
Query: 307 KMKSDDCLTDTSFYSSLIF-----------------ILSKAV---RFLIYNTMISSACVR 346
+M D Y+ L+ +LSK + RF YNT I
Sbjct: 415 EMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRF-AYNTRIVGEMKI 473
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
++ A +++++ PD T+ + C + ++ +L+ M+S G++P
Sbjct: 474 ADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEA---CDLLENMVSDGLIPDH 530
Query: 407 STHKMLAEELEKKS-LGNAKERIDELLTHAT 436
T+ + K L A+E +E+L+
Sbjct: 531 VTYTSIINGFVKNGHLRKAREVFNEMLSKGV 561
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%)
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A+ M Q G P V+Y ++ YC+E + L EMQE+GC P+ +T ++++
Sbjct: 199 AKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVN 258
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
L K ++ +A + E+M + Y+ LI
Sbjct: 259 GLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLI 292
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/364 (18%), Positives = 133/364 (36%), Gaps = 75/364 (20%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEAL-GKSKKFGLMW--------ELVKEIDELSNGYVS-L 166
F W Q + + + A+++ L G W E+ +D L G+V L
Sbjct: 106 FRWVMAQPDFKESEFVFCAILDILVGNDLMHAAYWVMERVVSFEMHGVVDVLIAGHVXCL 165
Query: 167 AAMSTVMRR---LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGW 222
++R D + + ++ L N ++ A V+ + I + ++ ++ +
Sbjct: 166 LVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSY 225
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
CK + D A + + EM + G P+ V+Y + ++ + + ++EM G S
Sbjct: 226 CKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSA 285
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR---------- 332
T +++ + EA + E+M + S Y++L++ L K V+
Sbjct: 286 YTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSD 345
Query: 333 -----------------------------FLI---------------YNTMISSACVRSE 348
FL+ YNT+I C+
Sbjct: 346 MLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGY 405
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL--NLMREMLSKGIVPQE 406
AL+L++++ + PD T+ + C K G + + EMLSKG+ P
Sbjct: 406 LDAALRLKKEMTDQGLFPDIFTYTILVNGC-----FKLGYVSMARGFFNEMLSKGLKPDR 460
Query: 407 STHK 410
+
Sbjct: 461 FAYN 464
>gi|297832366|ref|XP_002884065.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp.
lyrata]
gi|297329905|gb|EFH60324.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp.
lyrata]
Length = 1056
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/358 (22%), Positives = 142/358 (39%), Gaps = 82/358 (22%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR-- 174
F WA T G++H+ TY A+ L ++F +++L+ E+ E + A T++R
Sbjct: 51 FRWASTFPGFIHSRSTYRALFYKLCVFRRFDTVYQLLDEMPESTGLPPDDAIFVTIIRGF 110
Query: 175 ---RLDTRAMSV------------------LMDTLVKR---------------------- 191
RL R +SV ++D LVK
Sbjct: 111 GRARLTKRVISVVDLVSKFGIKPSLKVFNSILDVLVKEDIDIAREFFRRKMMASGIQGDE 170
Query: 192 -------------NSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
N + +K+ K C ++ ++ +++ L+H CK K A+ M E
Sbjct: 171 YTYGILMKGLCLTNRIGDGFKLLQIMKTCGVAPNTVVYNTLLHALCKNGKVGRARSLMSE 230
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M + P+ V++ I YC E+ + L++ G P V+T T VM L +
Sbjct: 231 MKE----PNDVTFNILISAYCNEQKLIQSMVLLEKCFSLGLVPDVVTVTKVMEVLCNEGR 286
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSL------IFILSKAVRFL-------------IYNT 338
+ EAL+V E+++S D ++L + + A RF YN
Sbjct: 287 VSEALEVLERVESKGGKVDVVACNTLVKGYCAVGKMRVAQRFFQEMERKGYLPNVETYNL 346
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
+I+ C +AL ++ D+ + + T ++ + R DG+ +L LM++
Sbjct: 347 LIAGFCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSVRGRTDDGIKILELMQD 404
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/301 (20%), Positives = 121/301 (40%), Gaps = 41/301 (13%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV--SLAAMSTVMRRLDTRAMS 182
GY+ ETYN ++ G++ + +++ + + A +T++R L R +
Sbjct: 336 GYLPNVETYNLLIAGFCD---VGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSVRGRT 392
Query: 183 ---VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ + L++ + H ++ ++ +I+G+ K + + A + + +M
Sbjct: 393 DDGIKILELMQDSETVHGARI------------DPYNSVIYGFYKENRWEDALEFLLKM- 439
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
P V + + C + V +M +G PSVI ++H + +
Sbjct: 440 -EKLFPRAVDRSFKLISLCEKGGMDDVKTAYDQMTGEGGVPSVIVSHCLIHRYSQEGYME 498
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
E L++ M + L +S +N +I C + N +K + +
Sbjct: 499 ETLELINDMVTRGYLPRSS----------------TFNAVIIGFCKEDKVMNGIKFVEDM 542
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
E C PD E++ L+ C K ++ L+L+LM E K IVP S L L +K
Sbjct: 543 AERGCVPDRESYNPLLEELCVKGDIQKAWLLLSLMVE---KSIVPDSSMWSSLMFCLSQK 599
Query: 420 S 420
+
Sbjct: 600 T 600
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%)
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
S F+ +I G+CK K K +++M + G PD SY +E C + D +K L
Sbjct: 516 SSTFNAVIIGFCKEDKVMNGIKFVEDMAERGCVPDRESYNPLLEELCVKGDIQKAWLLLS 575
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIY 299
M EK P + +M L + I+
Sbjct: 576 LMVEKSIVPDSSMWSSLMFCLSQKTAIH 603
>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 827
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 120/284 (42%), Gaps = 36/284 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ GK G+ W +I L +G S D + L+ +
Sbjct: 254 TYNVILNVYGK---MGMPW---SKISGLVHGMKSSGVAP------DDYTYNTLISCCRRG 301
Query: 192 NSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A +VF + K S F+ L+ + K+R+ A + +KEM GFSP V+Y
Sbjct: 302 SLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTY 361
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I Y R+ R+ +M EKG KP V T T ++ EKA A++++ +M++
Sbjct: 362 NSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRA 421
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
C + +++LI + RF +K+ ++IE +C PD T
Sbjct: 422 AGCKPNICTFNALIKMHGNRGRF----------------AEMMKVFEEIEICNCAPDIVT 465
Query: 371 HARSLKMCCHKKRMKDGM--LVLNLMREMLSKGIVPQESTHKML 412
L + ++GM V + +EM G VP+ T L
Sbjct: 466 WNTLLAVFG-----QNGMDSEVSGVFKEMKRAGFVPERDTFNTL 504
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 135/300 (45%), Gaps = 54/300 (18%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEI-DELSNG--------YVSLA---AMSTVMR 174
TP+ +YNA++ AL + G +WE +++ E+ +G Y SL A S +
Sbjct: 530 TPDLSSYNAVLAALAR----GGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIE 585
Query: 175 RLDTRA----------MSVLMDTLVKRNS-------VAHAYKVFLKFKDCISLSSQIFDV 217
R+ T A + VL+ TLV NS HA++ LK K LS+ +
Sbjct: 586 RMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEE-LKKKGSPDLST--LNA 642
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
+I + + + A + + M + GFSP +Y + + R ++F + + LKE+ KG
Sbjct: 643 MIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKG 702
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337
KP +I+ V+ A + ++ +A +++ MK+ + D + YN
Sbjct: 703 LKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDV----------------ITYN 746
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
T ++S S +A+ + + + + CK + T+ + C R D ++ ++ + ++
Sbjct: 747 TFVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYNSIVDGYCKHSRRADAIMFVSSLNQL 806
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 27/241 (11%)
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
L+ + V+I K K A + + + GF D +YT I Y +R
Sbjct: 180 LNCSVVAVIITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLV 239
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK-VYEKMKSDDCLTDTSFYSSLIFILS 328
K+M+E+GCKP++IT ++++ K + + + MKS D Y++LI
Sbjct: 240 FKKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCR 299
Query: 329 KAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369
+ + + +NT++ A+++ +++E P
Sbjct: 300 RGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIV 359
Query: 370 THARSLKMCCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKER 427
T+ + +DG+L + L +M+ KGI P T+ L EK + R
Sbjct: 360 TYNSLISAYA-----RDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMR 414
Query: 428 I 428
I
Sbjct: 415 I 415
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 112/291 (38%), Gaps = 33/291 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T+NA+++ G +F M ++ +EI E+ N + +T++ M + + K
Sbjct: 430 TFNALIKMHGNRGRFAEMMKVFEEI-EICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKE 488
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
A F+ +D F+ LI + + A K M + G +PD SY
Sbjct: 489 MKRAG----FVPERDT-------FNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYN 537
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ R + + + EM++ CKP+ +T ++HA +K+I + E++ S
Sbjct: 538 AVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSG 597
Query: 312 DCLTDTSFYSSLIFILSKAVRFL------------------IYNTMISSACVRSEEGNAL 353
+L+ + SK + N MI+ R A
Sbjct: 598 LTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKGSPDLSTLNAMIAIYGRRQMVAKAN 657
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
++ + E P T+ + M + + VL +E+L+KG+ P
Sbjct: 658 EILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVL---KEILAKGLKP 705
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 41/235 (17%), Positives = 92/235 (39%), Gaps = 38/235 (16%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
+G+ T+N +++ GKS++ E++KE++ S
Sbjct: 317 SGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEME-----------------------FSG 353
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQ 232
++V NS+ AY ++ + L Q+ + L+ G+ K + A
Sbjct: 354 FSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAM 413
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ EM G P+ ++ I+ + F ++ +E++ C P ++T ++
Sbjct: 414 RIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVF 473
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----LIYNTMISSA 343
+ E V+++MK + + +++LI S+ F +Y M+ +
Sbjct: 474 GQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAG 528
>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
Length = 475
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 125/308 (40%), Gaps = 48/308 (15%)
Query: 132 TYNAMVEALGKSKK----FGLMWELVKE-------------------IDELSNGYVSLAA 168
+YN+++ +L K+KK F + +V E IDEL
Sbjct: 123 SYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQ 182
Query: 169 MSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ----IFDVLIHGWCK 224
M + + + ++ L+++ +A A V+ ++ IS + LIHG+
Sbjct: 183 MIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVY---EEMISAGCSPDVITYSTLIHGFSL 239
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
RK D A + + M G P+ V+Y C + C+E + ++M E+GC P +T
Sbjct: 240 ARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVT 299
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC 344
T +++ +I +A++V+++M S D Y+ L+ +A
Sbjct: 300 YTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRA-------------- 345
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ G A +L Q + CKPD +H + KR+ D + V M + G P
Sbjct: 346 --GKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQ--DHGCSP 401
Query: 405 QESTHKML 412
T+ L
Sbjct: 402 DLVTYNSL 409
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 17/178 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L+HG CK K D A + ++M + G PD V+YT + +C + EM
Sbjct: 265 YNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMV 324
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
KG P V+ ++ +A + EA ++++ M S +C DT ++ +I LSKA R
Sbjct: 325 SKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRL- 383
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEED-SCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+A+++ +++E+D C PD T+ + C ++R+ + M V
Sbjct: 384 ---------------DDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVF 426
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 83/197 (42%), Gaps = 20/197 (10%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
+I CK + D A ++ M + G+ PD +++ I C+ ++ L+ M
Sbjct: 55 VIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTI 114
Query: 278 C--KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335
S + ++++L KAK++++A ++ M S+ S +
Sbjct: 115 STRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSER---------------SVVPDVVS 159
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
Y+ +I C E G A KL +++ + +C P+ T+ L K R+ D +
Sbjct: 160 YSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQ---GVYE 216
Query: 396 EMLSKGIVPQESTHKML 412
EM+S G P T+ L
Sbjct: 217 EMISAGCSPDVITYSTL 233
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM- 273
++ L+ G+ + K A++ + M PD VS+ I+ + K + M
Sbjct: 335 YNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERME 394
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
Q+ GC P ++T ++ L +++ EA+KV++++
Sbjct: 395 QDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEI 429
>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
Length = 504
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 104/238 (43%), Gaps = 30/238 (12%)
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMK 236
LV S+ H + + + +D ++L QI + LIH CK R ++A +
Sbjct: 152 LVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFN 211
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
+M +G P+ V+Y + C + + L++M ++G +P+VIT T ++ A K
Sbjct: 212 QMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVG 271
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
+I EA ++Y+ M D Y++L I+ C A ++
Sbjct: 272 KIMEAKELYKVMIQMSVYPDVFTYTAL----------------INGLCTYGRLDEARQMF 315
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+E + P+ T+ + C KR++DG + EM KG+V T+ +L +
Sbjct: 316 YLMESNGYYPNEVTYTTLIHGFCKSKRVEDGT---KIFYEMSQKGLVANTITYTVLIQ 370
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 106/261 (40%), Gaps = 43/261 (16%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELS-----NGYVSLAAMSTVMRRLD-TRAMSVLM 185
T+ A+++A K K EL K + ++S Y +L RLD R M LM
Sbjct: 259 TFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLM 318
Query: 186 D------------TLV----KRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKS 228
+ TL+ K V K+F + +++ I + VLI G+C +
Sbjct: 319 ESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRP 378
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D AQ+ +M PD +Y ++ C K K M+++ +++T TI+
Sbjct: 379 DVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTII 438
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR--FLIYNTMISSACVR 346
+ + K ++ +A ++ + SK ++ + Y TMIS C R
Sbjct: 439 IQGMCKVGKVEDAFDLFCSL------------------FSKGMKPNVITYTTMISGFCRR 480
Query: 347 SEEGNALKLRQKIEEDSCKPD 367
A L +K++ED P+
Sbjct: 481 GFIHEADALFKKMKEDGFLPN 501
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 76/193 (39%), Gaps = 22/193 (11%)
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P V +T + + K F V ++MQ G P + TC IVM+ + ++ Q A
Sbjct: 80 PSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCF 139
Query: 305 YEKMKSDDCLTDTSFYSSLIF-----------------ILSKAVR--FLIYNTMISSACV 345
KM D ++SL+ I+ R + Y T+I C
Sbjct: 140 LGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCK 199
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+A+++ ++ ++ +P+ T+ + C R D L+R+M+ +GI P
Sbjct: 200 NRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAW---LLRDMMKRGIQPN 256
Query: 406 ESTHKMLAEELEK 418
T L + K
Sbjct: 257 VITFTALIDAFVK 269
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 113/267 (42%), Gaps = 25/267 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKSDYAQKAM 235
D ++ MD + K V +F K L + + +LIHG K ++
Sbjct: 530 DLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIF 589
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M Q GF+ D +Y ++ +C+ K L+EM+ K P+V T ++ L K
Sbjct: 590 HAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKI 649
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTMIS---------- 341
++ EA ++E+ KS + YSSLI K R +LI M+
Sbjct: 650 DRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTW 709
Query: 342 ----SACVRSEEGN-ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
A V++EE N AL Q ++E C P+ T++ + C ++ + +E
Sbjct: 710 NSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFV---FWQE 766
Query: 397 MLSKGIVPQESTHKMLAEELEKKSLGN 423
M +G+VP T+ + L K +GN
Sbjct: 767 MQKQGLVPNVVTYTTMIAGLAK--VGN 791
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 106/250 (42%), Gaps = 51/250 (20%)
Query: 120 AKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTR 179
A Q G+ YNA+V+ KS K +E+++E+ V R T
Sbjct: 591 AMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMK--------------VKRVPPTV 636
Query: 180 AM-SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
A ++D L K + + AY +F + K I L+ ++ LI G+ K + D A ++E
Sbjct: 637 ATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEE 696
Query: 238 MFQHGF-----------------------------------SPDGVSYTCFIEHYCREKD 262
M + G SP+ +Y+ I CR +
Sbjct: 697 MMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQK 756
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
+ K +EMQ++G P+V+T T ++ L K I +A ++E+ K++ D + +++
Sbjct: 757 YNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNA 816
Query: 323 LIFILSKAVR 332
LI +S A R
Sbjct: 817 LIEGMSHANR 826
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/360 (21%), Positives = 144/360 (40%), Gaps = 67/360 (18%)
Query: 92 DKVSEILR-KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMW 150
D VS ++R +R ++V+ A++ F A + Y ++ A+ ++++
Sbjct: 152 DLVSALVRTRRLDDAERVIAAMRRLKFRPAFS---------AYTVLIGAMAEARQPERAL 202
Query: 151 ELVKEIDELSNGY-VSLAAMSTVMRRL-----------------------DTRAMSVLMD 186
EL++++ E+ GY V + +T++R L D +V +D
Sbjct: 203 ELLRQMQEV--GYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCID 260
Query: 187 TLVKRNSVAHAYKVFLKFK------DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
K +V A+K F + K D +S +S I+ + CK + A++ +M
Sbjct: 261 CFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVL-----CKAGRLSEAEELFGQMET 315
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
P +Y I Y F L +++E+GC PSV++ ++ L K +++ E
Sbjct: 316 ERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDE 375
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
AL ++E MK D ++ YN +I C+ + A +R ++E
Sbjct: 376 ALTLFEAMKKDAEPNSST-----------------YNIIIDMLCMAGKVEEAYMIRDEME 418
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
P+ T + C K+ + + +G P T+ L + L KK
Sbjct: 419 HAGLFPNLLTVNIMVDRLCKAKKFEPA---YEMFETASQRGCNPNSVTYCSLIDGLGKKG 475
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 24/199 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T N MV+ L K+KKF +E+ + + S+ S L+D L K+
Sbjct: 428 TVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCS-------------LIDGLGKK 474
Query: 192 NSVAHAYKVFLKFKDC------ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+V AY++F D + +S I + +HG RK D K KEM + G P
Sbjct: 475 GNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHG----RKED-GHKIFKEMNRRGCQP 529
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D +++ + D K ++++ G P V + +I++H L KA Q E ++
Sbjct: 530 DLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIF 589
Query: 306 EKMKSDDCLTDTSFYSSLI 324
MK D Y++++
Sbjct: 590 HAMKQQGFALDARAYNAVV 608
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 103/246 (41%), Gaps = 31/246 (12%)
Query: 181 MSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238
+++++D L K AY++F + C + +S + LI G K D A + + M
Sbjct: 429 VNIMVDRLCKAKKFEPAYEMFETASQRGC-NPNSVTYCSLIDGLGKKGNVDDAYRLFENM 487
Query: 239 FQHGFSPDGVSYTCFIEHY---CREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
G + + V YT I ++ R++D K+ KEM +GC+P + M + KA
Sbjct: 488 LDTGHNANPVVYTSLIRNFFMHGRKEDGHKI---FKEMNRRGCQPDLTLLNTYMDCVFKA 544
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR---------------FLI----Y 336
+ + ++E +K L D YS LI L+KA + F + Y
Sbjct: 545 GDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAY 604
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N ++ C + A ++ ++++ P T+ + R+ + + L E
Sbjct: 605 NAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYM---LFEE 661
Query: 397 MLSKGI 402
SKGI
Sbjct: 662 AKSKGI 667
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 14/200 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
Y+++++ GK V IDE Y+ L M + + LMD LVK
Sbjct: 673 VYSSLIDGFGK----------VGRIDE---AYLILEEMMKKGLTPNVYTWNSLMDALVKA 719
Query: 192 NSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A F K+ S ++ + +LI+G C+ +K + A +EM + G P+ V+Y
Sbjct: 720 EEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTY 779
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T I + + + + G P + ++ + A + EA V+E+ +
Sbjct: 780 TTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRL 839
Query: 311 DDCLTDTSFYSSLIFILSKA 330
C + SL+ L+KA
Sbjct: 840 KGCRINVKACISLLDALNKA 859
>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 117/270 (43%), Gaps = 24/270 (8%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ L++ L K+ V A + + F+ +S + LI G C+ R D A M
Sbjct: 243 FNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMV 302
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ G P+ V+Y+ I C E + L+EM EKG +P+V T T+ + AL +
Sbjct: 303 KEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEE 362
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMI 340
EA+++ +MK C + Y++LI LS+ + + YN +I
Sbjct: 363 EAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALI 422
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+ CV ALK+ +E + +T+ +K C ++ M+ L +ML
Sbjct: 423 NELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMV---LFEKMLKM 479
Query: 401 GIVPQESTHKMLAEE-LEKKSLGNAKERID 429
G +P T+ L L K ++ NA +D
Sbjct: 480 GPLPTVVTYNTLINGYLTKGNVNNAARLLD 509
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 136/335 (40%), Gaps = 57/335 (17%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEAL---GKSKKFGLMWE---------LVKEIDELSNGYV 164
F W + G + +TYN +++ L G +K +++E V + L NGY+
Sbjct: 438 FHWMEGH-GSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYL 496
Query: 165 SLAAMSTVMRRLDTR----------AMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQ 213
+ ++ R LD + L+ K + A F + +C ++ +
Sbjct: 497 TKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPV 556
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ LI G K K D A ++ M + G +P+ SY I +E F + + +M
Sbjct: 557 SYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 616
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
E+G P+VIT T ++ L + + A K++ M+ CL + YSSLI+ L
Sbjct: 617 AEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGL------ 670
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN- 392
C + A L +++E PD T + DG +VL
Sbjct: 671 ----------CQEGKADEAEILLKEMERKGLAPDEVTFT----------SLIDGFVVLGR 710
Query: 393 ------LMREMLSKGIVPQESTHKMLAEELEKKSL 421
L+R M+ G P T+ +L + L+K+ L
Sbjct: 711 IDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECL 745
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 131/308 (42%), Gaps = 27/308 (8%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFG-------LMWELVKEIDELSNGYVSLAAM 169
F W + Y H + +M+ L + + F LM + + +E+ L +
Sbjct: 137 FYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEI 196
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKS 228
S + + + L+ L K V A ++ + I S F+ LI+ K K
Sbjct: 197 SGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKV 256
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
A+ + ++FQ+ SPD +YT I +CR ++ M ++GC P+ +T + +
Sbjct: 257 REAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 316
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
++ L ++ EAL + E+M + + Y+ Y I++ C
Sbjct: 317 INGLCNEGRVDEALDMLEEMIEKG--IEPTVYT--------------YTLPITALCAIEH 360
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
E A++L ++++ C+P+ +T+ + R+ + + L +ML +G+VP T
Sbjct: 361 EEEAIELVARMKKRGCRPNVQTYT---ALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVT 417
Query: 409 HKMLAEEL 416
+ L EL
Sbjct: 418 YNALINEL 425
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 119/300 (39%), Gaps = 25/300 (8%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+ G P +Y +++ K K + L++ ++E+ + +
Sbjct: 547 VECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGC-------------NPNVESY 593
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ +++ L K N + A K+ K + L + I + LI G C+ ++ +A K +M +
Sbjct: 594 NAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEK 653
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
P+ +Y+ I C+E + + LKEM+ KG P +T T ++ +I
Sbjct: 654 RKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDH 713
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN--------A 352
A + +M C + YS L+ L K L + V S +
Sbjct: 714 AFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIV 773
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
L ++ E C+P +T++ + C K R + L+++M +G P + L
Sbjct: 774 SNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAE---QLVKDMKERGFCPDREIYYSL 830
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 97/256 (37%), Gaps = 75/256 (29%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
E+YNA++ L K +F E +++ + + V+ + L+D L +
Sbjct: 591 ESYNAVINGLSKENRF-------SEAEKICDKMAEQGLLPNVI------TYTTLIDGLCR 637
Query: 191 RNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP--- 245
A+K+F ++ + C+ + + LI+G C+ K+D A+ +KEM + G +P
Sbjct: 638 NGRTQFAFKIFHDMEKRKCLP-NLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEV 696
Query: 246 ------DGVSYTCFIEHY-----------CR----------------------------- 259
DG I+H C+
Sbjct: 697 TFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHE 756
Query: 260 --------EKD--FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
EKD F V L M E GC+P++ T + ++ L + + YEA ++ + MK
Sbjct: 757 AVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMK 816
Query: 310 SDDCLTDTSFYSSLIF 325
D Y SL+
Sbjct: 817 ERGFCPDREIYYSLLI 832
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 14/189 (7%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
++ G T +TY+ +V L + +F +LVK++ E G+ D
Sbjct: 781 SEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKE--RGFCP-----------DREIY 827
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L+ K V HA K+F + L I+ LI CK + + AQ M +
Sbjct: 828 YSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLE 887
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
++ D + +T ++ +E + L M+ K P++ T I+ L + + E
Sbjct: 888 KEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIE 947
Query: 301 ALKVYEKMK 309
+ + +K+K
Sbjct: 948 SEPLADKLK 956
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK--- 271
+ L+ G C+ + A++ +K+M + GF PD Y + +C+ + VD+ LK
Sbjct: 792 YSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLE---VDHALKIFH 848
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
++ KG + + ++ AL KA Q+ EA +++ M + D ++ L+
Sbjct: 849 SIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLV 901
>gi|242041823|ref|XP_002468306.1| hypothetical protein SORBIDRAFT_01g043390 [Sorghum bicolor]
gi|241922160|gb|EER95304.1| hypothetical protein SORBIDRAFT_01g043390 [Sorghum bicolor]
Length = 519
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 131/299 (43%), Gaps = 46/299 (15%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL------ 176
+ G +P + + LG++++F MW+L+ + V+ V+ R+
Sbjct: 103 RGGVAPSPYAIDTALYVLGRARRFPHMWDLLATTRRICPDAVTSRTAMIVLGRVAKVCSV 162
Query: 177 -DTRA-----------------MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVL 218
+T A + L+ TL + S++ A VF K ++ F++L
Sbjct: 163 HETVASFRRLARMFHAVDPACLFNALLRTLCQEKSMSDARNVFHALKYDFRVNRHTFNIL 222
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
+ GW + ++ A+ + EM + G PD V+Y I+ +C+ +D K L EM+EK
Sbjct: 223 LSGW---KSAEDAEAFVAEMRELGVEPDLVTYNSLIDCHCKNRDVEKAYKLLDEMREKDI 279
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--FILSKAV--RFL 334
P +IT T ++ L Q +A + ++M C D Y++ I F+++K + F
Sbjct: 280 SPDIITYTSLIGGLGLIGQPDKARDLLKEMHELGCSPDVPAYNAAIRNFVIAKRLGDAFA 339
Query: 335 IYNTMISSACVRS---------------EEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+ + M S + + + G+ +L +++ + C P+ ++ +++C
Sbjct: 340 LMDQMASKGLMPNPTTYNLFFRCYYWAFDIGSTWRLYERMRSEGCFPNTQSCMFIIRLC 398
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 107/241 (44%), Gaps = 20/241 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D V+++ L KR A+ + K + + I++ +I G CK + D A
Sbjct: 834 DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLF 893
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KEM G P+ V+Y+ I C + L +M E+ P V T + ++ A K
Sbjct: 894 KEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKE 953
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ EA K+Y++M S S++ Y+++I+ C+ A ++
Sbjct: 954 GKLVEAEKLYDEM------VKRSIDPSIV----------TYSSLINGFCMHDRLDEAKQM 997
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ + C PD T+ +K C KR+++GM V REM +G+V T+ +L +
Sbjct: 998 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF---REMSQRGLVGNTVTYNILIQG 1054
Query: 416 L 416
L
Sbjct: 1055 L 1055
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 22/240 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKA 234
D + L++ +RN V+ A + K + I I ++ +I CKT++ + A
Sbjct: 257 DRVTIGSLVNGFCRRNRVSDAVSLVDKMVE-IGYKPDIVAYNAIIDSLCKTKRVNDAFDF 315
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
KE+ + G P+ V+YT + C + L +M +K P+VIT + ++ A K
Sbjct: 316 FKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVK 375
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
++ EA +++E+M D YSSL I+ C+ A +
Sbjct: 376 NGKVLEAKELFEEMVRMSIDPDIVTYSSL----------------INGLCLHDRIDEANQ 419
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ + C D ++ + C KR++DGM L REM +G+V T+ L +
Sbjct: 420 MFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM---KLFREMSQRGLVSNTVTYNTLIQ 476
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 30/221 (13%)
Query: 203 KFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
KF ISL Q+ + +LI+ +C+ + A + +M + G+ P+ V+ +
Sbjct: 710 KFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLS 769
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ YC K + + +M G +P+ +T ++H L + EA+ + ++M +
Sbjct: 770 SLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAK 829
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
C D + Y +++ C R + A L K+E+ +P +
Sbjct: 830 GCQPD----------------LVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIY 873
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C K M D LNL +EM +KGI P T+ L
Sbjct: 874 NTIIDGLCKYKHMDDA---LNLFKEMETKGIRPNVVTYSSL 911
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/364 (22%), Positives = 140/364 (38%), Gaps = 96/364 (26%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAM 169
+ GY YNA++++L K+K+ ++ KEI+ L NG + +
Sbjct: 285 VEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRW 344
Query: 170 STVMRRL----------DTRAMSVLMDTLVKRNSVAHAYKVF------------------ 201
S R L + S L+D VK V A ++F
Sbjct: 345 SDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 404
Query: 202 ---LKFKDCISLSSQIFDV---------------LIHGWCKTRKSDYAQKAMKEMFQHGF 243
L D I ++Q+FD+ LI+G+CK ++ + K +EM Q G
Sbjct: 405 INGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGL 464
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+ V+Y I+ + + D K +M G P + T I++ L ++ +AL
Sbjct: 465 VSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALV 524
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSAC 344
++E M+ + D Y+++I + K + + Y TM+S C
Sbjct: 525 IFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLC 584
Query: 345 VRS--EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN--LMREMLSK 400
+ E AL + K +E K DC + DG + L+ L+++MLS
Sbjct: 585 TKGLLHEVEALYTKMK-QEGLMKNDCT--------------LSDGDITLSAELIKKMLSC 629
Query: 401 GIVP 404
G P
Sbjct: 630 GYAP 633
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 111/266 (41%), Gaps = 23/266 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D S L+D VK + A K++ + K I S + LI+G+C + D A++
Sbjct: 939 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 998
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ M PD V+Y I+ +C+ K + +EM ++G + +T I++ L +A
Sbjct: 999 EFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQA 1058
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
A +++++M SD + + YNT++ C + A+ +
Sbjct: 1059 GDCDMAQEIFKEMVSDGVPPN----------------IMTYNTLLDGLCKNGKLEKAMVV 1102
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ ++ +P T+ ++ C +++DG +L + KG+ P + +
Sbjct: 1103 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW---DLFCNLSLKGVKPDVVAYNTMISG 1159
Query: 416 LEKKSLGNAKERIDELLTHATEQRTF 441
+K +KE D L E T
Sbjct: 1160 FCRKG---SKEEADALFKEMKEDGTL 1182
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 26/228 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G+CK ++ + + +EM Q G + V+Y I+ + D KEM
Sbjct: 1013 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMV 1072
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
G P+++T ++ L K ++ +A+ V+E ++ Y+ +I + KA +
Sbjct: 1073 SDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 1132
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ YNTMIS C + + A L ++++ED P+ + +
Sbjct: 1133 DGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLI 1192
Query: 376 KMCCHKKRMKDG--MLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ R++DG L++EM S G ST ++ L L
Sbjct: 1193 -----RARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRL 1235
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 14/161 (8%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+Q G + TYN +++ L ++ + E+ KE+ VS +M
Sbjct: 1037 SQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM-------VSDGVPPNIM------TY 1083
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L+D L K + A VF + + + ++++I G CK K + +
Sbjct: 1084 NTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSL 1143
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
G PD V+Y I +CR+ + D KEM+E G P+
Sbjct: 1144 KGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 1184
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 80/194 (41%), Gaps = 14/194 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +++ K K+ E+ +E+ + G V +T ++L+ L +
Sbjct: 1012 TYNTLIKGFCKYKRVEEGMEVFREMSQ--RGLVG-----------NTVTYNILIQGLFQA 1058
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
A ++F + D + + ++ L+ G CK K + A + + + P +Y
Sbjct: 1059 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 1118
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
IE C+ + KG KP V+ ++ + EA ++++MK
Sbjct: 1119 NIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKE 1178
Query: 311 DDCLTDTSFYSSLI 324
D L ++ Y++LI
Sbjct: 1179 DGTLPNSGCYNTLI 1192
>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
Length = 465
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 140/330 (42%), Gaps = 43/330 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
+YN ++E L K +++ ELV+ D +S G S M T S L+ K
Sbjct: 47 SYNGLLEGLCKLERWHEAEELVR--DMISRGGRSTPDMVTY---------STLLSGYCKA 95
Query: 192 NSVAHAYKVFLKFKDCISLS----SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
V + ++ K+ IS + ++ ++ CK+ + A + ++EM + G P
Sbjct: 96 GKVEESRELL---KEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTL 152
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+++ I CREK+ D L++M G K V+T +M L KA ++ EA ++ E+
Sbjct: 153 ITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLER 212
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFL-------------------IYNTMISSACVRSE 348
MK+ C D YSS ++ L K+ + L YNT++ C +
Sbjct: 213 MKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGK 272
Query: 349 EGNALK-LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
AL+ + Q D C + ++ + C R ++ ++M M G P
Sbjct: 273 IDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQE---ARSVMEAMARAGCRPDVV 329
Query: 408 THKMLAEELEKKSLGNAKERIDELLTHATE 437
T+ L L K G +E ++ + A E
Sbjct: 330 TYSSLVNGLCKA--GKIEEAVEAVREMAME 357
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 23/193 (11%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ ++D L K + A ++ + D L+ + ++ G CK ++ A+ M+ M
Sbjct: 261 NTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMA 320
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ G PD V+Y+ + C+ + ++EM +GCKP+ +T ++H L ++
Sbjct: 321 RAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLA 380
Query: 300 EALKVYEKM-----KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
EA ++ E+M C S Y++LI L KA R +ALK
Sbjct: 381 EAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRI----------------DDALK 424
Query: 355 LRQKIEEDSCKPD 367
Q++ C PD
Sbjct: 425 FFQRMRSQGCDPD 437
>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
Length = 734
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 120/279 (43%), Gaps = 26/279 (9%)
Query: 157 DELSNGYVSLA-AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQI 214
D L++ V L +M + R D L+ L V A ++ + + I + +
Sbjct: 128 DRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVV 187
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ L+ G+CK+ + + K EM + G PD V YT I+ C+ +K + M
Sbjct: 188 YSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMV 247
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
+G +P+V+T ++++ + K + EA+ V +KM D Y++LI
Sbjct: 248 RRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMD 307
Query: 325 ---FILSKAVR--------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
++L + VR + +N++I C A ++R +EE C + T+
Sbjct: 308 EAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNL 367
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ +++ M LM EM S G+ P T+ +L
Sbjct: 368 LIGGLLRVHKVRKAM---ELMDEMTSLGLEPDSFTYSIL 403
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 95/220 (43%), Gaps = 21/220 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++LI G + K A + M EM G PD +Y+ I+ +C+ + + L M+
Sbjct: 365 YNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMR 424
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
++G +P + ++ A+ + + A ++ +M D +F + +
Sbjct: 425 DRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM-------DNNF----------PLDVV 467
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
Y+TMI AC + A +L + I ++ PD T++ + M M+ VL
Sbjct: 468 AYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVL--- 524
Query: 395 REMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLT 433
++M + G +P + L + K + E I E++T
Sbjct: 525 KQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMIT 564
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 17/170 (10%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ + ++ + A +F + + L + +IHG CK A++ +K + G
Sbjct: 438 LLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGL 497
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+PD V+Y+ I + + D + LK+M G P V ++ +I + L+
Sbjct: 498 TPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLE 557
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
+ +M + + D+ S+L S++ V S EG AL
Sbjct: 558 LIREMITKNIALDSKIISTL-----------------STSLVASNEGKAL 590
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 19/199 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ VL+ C R +D A ++ M G D V+Y I C + K + EM
Sbjct: 118 YTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC 177
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
E G +P+V+ + ++ K+ + + KV+ +M D Y+ LI L K +
Sbjct: 178 ESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAK 237
Query: 333 -----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ YN +I+ C A+ + +K+ E PD T+ +
Sbjct: 238 KAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLI 297
Query: 376 KMCCHKKRMKDGMLVLNLM 394
K M + M +L M
Sbjct: 298 KGLSDVLEMDEAMWLLEEM 316
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 24/184 (13%)
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQ---EKGCKPSVITCTIVMHALEKAKQIYEAL 302
D VSY + CR + L+ M C+P+ ++ T++M AL + +A+
Sbjct: 76 DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362
+ M+S D + Y T+I C +E A++L ++ E
Sbjct: 136 GLLRSMRSAGVRADV----------------VTYGTLIRGLCDAAEVDKAVELMGEMCES 179
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLG 422
+P+ ++ L+ C R +D V + EM KGI P + L + L K +G
Sbjct: 180 GIEPNVVVYSSLLQGYCKSGRWED---VGKVFVEMSEKGIEPDVVMYTGLIDSLCK--VG 234
Query: 423 NAKE 426
AK+
Sbjct: 235 KAKK 238
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/224 (19%), Positives = 90/224 (40%), Gaps = 25/224 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMF---QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
++ ++ C+ D A ++ M P+ VSYT + C ++ + L+
Sbjct: 80 YNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLR 139
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
M+ G + V+T ++ L A ++ +A+++ +M + YSSL+ K+
Sbjct: 140 SMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSG 199
Query: 332 RF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
R+ ++Y +I S C + A + + +P+ T+
Sbjct: 200 RWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYN 259
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ C + +K+ + VL M E KG+ P T+ L + L
Sbjct: 260 VLINCMCKEGSVKEAIGVLKKMSE---KGVAPDVVTYNTLIKGL 300
>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 721
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/377 (21%), Positives = 154/377 (40%), Gaps = 59/377 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAA--MSTVMR 174
F W + G+ H P+TY M+E LG+ K + + I++ SNG V L ++++R
Sbjct: 105 FNWIH-EKGFSHNPQTYFIMLEILGREKNLNIARNFLYSIEKRSNGEVKLEDRFFNSLIR 163
Query: 175 RLDTRAM------------------------SVLMDTLVKRNSVAHAYKVFLKFKDCISL 210
+ SVL+ L+KR A +V+ + +
Sbjct: 164 SYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLL-VLLKRGRTNMAKEVYDEMLKTYGV 222
Query: 211 --SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
+ +++LI G+CK D KEM PD V+Y ++ CR KV +
Sbjct: 223 KPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKI-KVAH 281
Query: 269 TLKEMQEKGCK---PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
L K CK P V+T T ++ + +++ EAL + E+M + Y++LI
Sbjct: 282 NLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIK 341
Query: 326 ILSKAVRF--------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
L +A ++ +NT+I+S C A K+ + +++
Sbjct: 342 GLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVS 401
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMRE----MLSKGIVPQESTHKMLAEEL-EKKS 420
D +++ ++ C K ++ + + E + S G P +++K + + L E
Sbjct: 402 ADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSYGPKPLAASYKCMFQYLCENGK 461
Query: 421 LGNAKERIDELLTHATE 437
A+ + +L+ T+
Sbjct: 462 TKKAERVLRQLMKRGTQ 478
>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 724
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 100/261 (38%), Gaps = 57/261 (21%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +L+ G+CK K D A + EM G P+ V + C I +C+E + +EM
Sbjct: 421 YTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMP 480
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL-----SK 329
KGCKP V T ++ L + +I AL + M S+ + +T Y++LI K
Sbjct: 481 RKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIK 540
Query: 330 AVRFLI--------------YNTMISSACVRSEEGNALKLRQKIEED-------SCK--- 365
R L+ YN++I C E A L +K+ D SC
Sbjct: 541 EARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILI 600
Query: 366 -------------------------PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
PD T + C R++DG L + R++ ++
Sbjct: 601 NGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDG---LTMFRKLQAE 657
Query: 401 GIVPQESTHKMLAEELEKKSL 421
GI P T+ L L K
Sbjct: 658 GIPPDTVTYNTLMSWLCKGGF 678
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 139/346 (40%), Gaps = 59/346 (17%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAM-STVMRR 175
F+W +Q GY H+ + Y ++ LG + +F + L+ ++ + G V ++ ++MR
Sbjct: 92 FSWTGSQKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKD--EGIVFKESLFISIMRD 149
Query: 176 LD--------TRAM----------------SVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211
D TR M +V+++ LV N A VF LS
Sbjct: 150 YDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDM-----LS 204
Query: 212 SQI------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
+I F V++ C + D A +++M +HG P+ V Y I + +
Sbjct: 205 RKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNE 264
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
L+EM GC P T V+ L K +I EA K+ +M D Y L+
Sbjct: 265 ALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMN 324
Query: 326 ILSKAVRF---------------LIYNTMISSACV--RSEEGNALKLRQKIEEDSCKPDC 368
L K R +I+NT+I R ++ A+ L + PD
Sbjct: 325 GLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAV-LSDMVTSYGIVPDV 383
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
T+ SL KK + L L ++R+M +KG P ++ +L +
Sbjct: 384 CTY-NSLIYGYWKKGLVG--LALEVLRDMRNKGCKPNVYSYTILVD 426
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 92/197 (46%), Gaps = 8/197 (4%)
Query: 155 EIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
E+DE+ + L M + +T + L++ ++R + A K+ + SL +I
Sbjct: 500 EVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEI 559
Query: 215 -FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ LI G C+ + D A+ ++M + G P +S I CR + KEM
Sbjct: 560 TYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEM 619
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+G P ++T +++ L +A +I + L ++ K++++ DT Y++L+ L K
Sbjct: 620 VLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKG--- 676
Query: 334 LIYNTMISSACVRSEEG 350
+ AC+ +EG
Sbjct: 677 ----GFVYDACLLLDEG 689
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/343 (20%), Positives = 140/343 (40%), Gaps = 56/343 (16%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEI-------DELSNGYV--------SLAAM 169
G + ET+N ++ L K + ++V + D+++ GY+ + A
Sbjct: 276 GCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAA 335
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI------------FDV 217
+ R+ + SV+ +TL+ H + + D ++ S + ++
Sbjct: 336 KDLFYRI-PKPTSVIFNTLI------HGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNS 388
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LI+G+ K A + +++M G P+ SYT ++ +C+ + L EM G
Sbjct: 389 LIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADG 448
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF------------ 325
KP+ + ++ A K +I EA++++ +M C D ++SLI
Sbjct: 449 LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL 508
Query: 326 -----ILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
++S+ V + YNT+I++ R E A KL ++ D T+ +K
Sbjct: 509 WLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGL 568
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
C + +L +ML G+VP + +L L + +
Sbjct: 569 CRAGEVDKAR---SLFEKMLRDGLVPSSISCNILINGLCRSGM 608
>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
Length = 556
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 134/324 (41%), Gaps = 50/324 (15%)
Query: 100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDEL 159
+R PD ++ F WA Q GY H +YN +++ L KS G + K +L
Sbjct: 2 RRSSRPDLAIQ-----FFDWAGEQDGYKHDVHSYNHLLDILVKS---GHQFRTGKVYKDL 53
Query: 160 SNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ--IFDV 217
+ S ++ +L+ K A + FL+ D S++ IF+
Sbjct: 54 LHSGCSPNLVT----------FKILIRGNCKAGQATRALE-FLRALDEFSVAPDVYIFNF 102
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LIHG K D A K + M +PD +Y I C+ + K L+EM +G
Sbjct: 103 LIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRG 162
Query: 278 CK--PSVIT-CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
K P ++T T++ + K + EAL++ + MK + A +
Sbjct: 163 GKSAPDIVTYNTLINAGICKDGDVEEALEILDGMK----------------LAGPAPDVI 206
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML--VLN 392
YN++I + CV G ++ + ++ SC PD T L C K GML L
Sbjct: 207 TYNSIIHALCV---AGRVVEAAEILKTMSCSPDLVTFNTLLDGFC-----KAGMLPRALE 258
Query: 393 LMREMLSKGIVPQESTHKMLAEEL 416
++ EM + I+P T+ +L L
Sbjct: 259 VLEEMCRENILPDVITYTILVNGL 282
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 120/301 (39%), Gaps = 35/301 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI--------------DELSN-GYVSLAAMSTVMRRL 176
TYN ++ L KS EL++E+ + L N G + + L
Sbjct: 134 TYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEIL 193
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKV---------FLKFKDCISLSSQIFDVLIHGWCKTRK 227
D ++ ++ NS+ HA V LK C S F+ L+ G+CK
Sbjct: 194 DGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMSC-SPDLVTFNTLLDGFCKAGM 252
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
A + ++EM + PD ++YT + CR + Y L+E+ +G P VI T
Sbjct: 253 LPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTS 312
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRS 347
++ L K+ +I EA K+ ++M + + L + + ++ YN ++
Sbjct: 313 LVDGLCKSGEIEEAHKLVKEMSAREILAE-------MVSINMVPPLFTYNIVLGGLIKDG 365
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
A+ L + PD T+ + C R+++ +L EM S G P +
Sbjct: 366 SISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREA---CDLADEMASLGCFPNDV 422
Query: 408 T 408
T
Sbjct: 423 T 423
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 123/302 (40%), Gaps = 46/302 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY +V L + + + + L++EI + GY+ D A + L+D L K
Sbjct: 274 TYTILVNGLCRVGQVQVAFYLLEEI--VRQGYIP-----------DVIAYTSLVDGLCKS 320
Query: 192 NSVAHAYKV--------FLKFKDCISLSSQIF--DVLIHGWCKTRKSDYAQKAMKEMFQH 241
+ A+K+ L I++ +F ++++ G K A + ++
Sbjct: 321 GEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVAR 380
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G+ PD V+Y I+ C+ R+ EM GC P+ +T V+ L + ++ +A
Sbjct: 381 GYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDA 440
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV--RSEEGNALKLRQKI 359
+ +M + Y+SLI L K+ R + ACV + G + L
Sbjct: 441 WSLVVEMSRKRHAPNVVVYTSLIDGLCKSDR-------MDDACVVLDAMRGQGVAL---- 489
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
D + + + H R+ + M + + EM+++G +P ST K L E
Sbjct: 490 -------DDFAYRKLIVSMIHGGRVAEAMAMYD---EMVARGFLPDGSTSKTLEEAAMSN 539
Query: 420 SL 421
S+
Sbjct: 540 SV 541
>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 577
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 122/291 (41%), Gaps = 33/291 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN+++ AL + W K + L N V+ M V+ S ++D L K
Sbjct: 236 TYNSLIHALCNLCE----W---KHVTALLNEMVNSKIMPNVV------IFSTVVDALCKE 282
Query: 192 NSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A+ V + K + + ++ L+ G C + D A K M GF+PD VSY
Sbjct: 283 GKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSY 342
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ I YC+ + K Y +EM K P+ +T + +MH L ++ +A+ ++ +M +
Sbjct: 343 STLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVT 402
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ D F+ Y ++ C A+ L + IE + PD +
Sbjct: 403 RGQIPD----------------FVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQI 446
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ + C ++ +L + SKG+ P T+ ++ L ++ L
Sbjct: 447 YTIVIDGMCRAGELEAAR---DLFSNLSSKGLHPNVWTYTIMINGLCQQGL 494
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 125/304 (41%), Gaps = 34/304 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T N ++ + ++ G + ++ +I +L + ++A +T++R L K
Sbjct: 96 TLNILINSFCHLQRLGFAFSVLAKILKLGH-QPNIATFNTLIRGLCVEG---------KI 145
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
V H + + + + + LI+G CK + A + ++ M Q PD V YT
Sbjct: 146 GEVLHLFDKMIG--EGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYT 203
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
I+ C+++ + EM +G PS+ T ++HAL + + +M +
Sbjct: 204 SIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNS 263
Query: 312 DCLTDTSFYSSLIFILSK---------AVRFLI----------YNTMISSACVRSEEGNA 352
+ + +S+++ L K V +I YN ++ C+RSE A
Sbjct: 264 KIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEA 323
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+K+ + PD +++ + C +R++ M L EM K ++P T+ L
Sbjct: 324 VKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMY---LFEEMCRKELIPNTVTYSTL 380
Query: 413 AEEL 416
L
Sbjct: 381 MHGL 384
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 75/180 (41%), Gaps = 19/180 (10%)
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
+M G P+ + I +C + L ++ + G +P++ T ++ L
Sbjct: 84 QMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEG 143
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
+I E L +++KM + F +++ Y T+I+ C A++L
Sbjct: 144 KIGEVLHLFDKMIGE------GFQPNVV----------TYGTLINGLCKVGSTSAAIRLL 187
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ +E+ +C+PD + + C +++ NL EM+ +GI P T+ L L
Sbjct: 188 RSMEQGNCQPDVVVYTSIIDSLCKDRQVTQA---FNLFSEMIHQGISPSIFTYNSLIHAL 244
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 159 LSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL------SS 212
L NGY + + M + L+ V +++ H + +D I+L
Sbjct: 345 LINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRG 404
Query: 213 QIFD-----VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
QI D +L+ CK R+ D A +K + PD YT I+ CR +
Sbjct: 405 QIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAAR 464
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
+ KG P+V T TI+++ L + + EA K++ +MK
Sbjct: 465 DLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMK 506
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 52/116 (44%)
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
QI+ ++I G C+ + + A+ + G P+ +YT I C++ + E
Sbjct: 445 QIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGE 504
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS 328
M+ KG P+ T ++ + + +++ ++M + D S + L+ +LS
Sbjct: 505 MKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLS 560
>gi|125537564|gb|EAY84052.1| hypothetical protein OsI_39281 [Oryza sativa Indica Group]
Length = 762
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 131/323 (40%), Gaps = 51/323 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELS--------NGYVSLAA 168
F W K Q G+ H +Y M+ LG++++FG M +L+ E++ + N +
Sbjct: 353 FQWLKRQPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYG 412
Query: 169 MSTVMRRL--------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
+ +R D L+D K + A ++ + ++ + LS
Sbjct: 413 RANYLREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQE-VGLSPDT 471
Query: 215 F--DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
F +++ K A K EM ++G +P+ V+Y I + +++ V K+
Sbjct: 472 FTYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKD 531
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
MQ G +P IT +IVM L + EA V+ +M+ D D Y L+ + KA
Sbjct: 532 MQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMR-HDWAPDEPVYGLLVDLWGKA-- 588
Query: 333 FLIYNTMISSACVRSEEGN---ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
GN AL + +D +P+ T L R +D
Sbjct: 589 -----------------GNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYS 631
Query: 390 VLNLMREMLSKGIVPQESTHKML 412
VL + ML++G+VP T+ +L
Sbjct: 632 VL---QNMLAQGLVPSLQTYTLL 651
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 22/196 (11%)
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
Q GF DG SYT I + + F + L EM CKP+V+T ++HA +A +
Sbjct: 359 QPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLR 418
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMI 340
EA+KV+E+M+ D Y +LI I +K Y+ M+
Sbjct: 419 EAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLSPDTFTYSAMV 478
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+ A KL ++ E+ C P+ T+ + + + ++ V+ L ++M
Sbjct: 479 NCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYEN---VVKLYKDMQVA 535
Query: 401 GIVPQESTHKMLAEEL 416
G P + T+ ++ E L
Sbjct: 536 GFRPDKITYSIVMEVL 551
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 70/180 (38%), Gaps = 22/180 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELS--------NGYVSLAA--------------M 169
TY+AMV LGK ++L E+ E N ++L A M
Sbjct: 473 TYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDM 532
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSD 229
R D S++M+ L + A VF++ + + ++ +L+ W K D
Sbjct: 533 QVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRHDWAPDEPVYGLLVDLWGKAGNVD 592
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
A M Q G P+ + + + + F+ L+ M +G PS+ T T+++
Sbjct: 593 KALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNMLAQGLVPSLQTYTLLL 652
>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
Length = 1205
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 107/263 (40%), Gaps = 41/263 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +V+AL K K VKE + LA M + D S LMD
Sbjct: 271 TYNILVDALCKEGK-------VKEAKSV------LAVMLKACVKPDVITYSTLMDGYFLV 317
Query: 192 NSVAHAYKVFLKFKDCISLSS-----QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
V A VF + +SL + +LI+G+CK + D A KEM Q P
Sbjct: 318 YEVKKAQHVF----NAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPG 373
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+Y+ I+ C+ V + EM ++G +VIT + ++ L K + A+ ++
Sbjct: 374 IVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFN 433
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRS 347
KMK +T ++ L+ L K R YN MI C +
Sbjct: 434 KMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQG 493
Query: 348 EEGNALKLRQKIEEDSCKPDCET 370
AL + K+E++ C PD T
Sbjct: 494 LLEEALTMLSKMEDNGCIPDAVT 516
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/375 (21%), Positives = 145/375 (38%), Gaps = 84/375 (22%)
Query: 94 VSEILRKRYPSPDKVV--EALKCFCFTWAKTQT----------GYMHTPETYNAMVEALG 141
+++IL++ YP PD V +K C + G+ +Y ++ +
Sbjct: 117 LAKILKRGYP-PDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVC 175
Query: 142 KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF 201
K +L+++ID L + VM S ++D L K V+ AY +F
Sbjct: 176 KIGDTRAAIKLLQKIDG------RLTKPNVVM-------YSTIIDALCKYQLVSEAYGLF 222
Query: 202 -------------------------LKFKDCISLSSQI-----------FDVLIHGWCKT 225
K K+ I L +++ +++L+ CK
Sbjct: 223 SEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKE 282
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
K A+ + M + PD ++Y+ ++ Y + +K + M G P V T
Sbjct: 283 GKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTY 342
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------ 333
TI+++ K K + EAL ++++M + + YSSLI L K+ R
Sbjct: 343 TILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHD 402
Query: 334 -------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
+ Y+++I C A+ L K+++ +P+ T L C R+KD
Sbjct: 403 RGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKD 462
Query: 387 GMLVLNLMREMLSKG 401
V +++L+KG
Sbjct: 463 AQEVF---QDLLTKG 474
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 98/243 (40%), Gaps = 20/243 (8%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQK 233
+L+ + L++ + K A K+ K ++ + + + +I CK + A
Sbjct: 161 QLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYG 220
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
EM G S D V+Y+ I +C E ++ L EM K P+V T I++ AL
Sbjct: 221 LFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALC 280
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
K ++ EA V M D YS+L+ FL+Y + NA+
Sbjct: 281 KEGKVKEAKSVLAVMLKACVKPDVITYSTLM-----DGYFLVYEVKKAQHVF-----NAM 330
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
L PD T+ + C K + + LNL +EM K +VP T+ L
Sbjct: 331 SLM------GVTPDVHTYTILINGFCKNKMVDE---ALNLFKEMHQKNMVPGIVTYSSLI 381
Query: 414 EEL 416
+ L
Sbjct: 382 DGL 384
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 100/256 (39%), Gaps = 23/256 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D +++L++ + + V K K + + LI G C + A
Sbjct: 93 DLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFH 152
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++ GF + VSY I C+ D R L+++ + KP+V+ + ++ AL K
Sbjct: 153 DKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKY 212
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------LSKAVRFL-------------IY 336
+ + EA ++ +M D YS+LI+ L +A+ L Y
Sbjct: 213 QLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTY 272
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N ++ + C + A + + + KPD T++ + +K V N M
Sbjct: 273 NILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSL 332
Query: 397 MLSKGIVPQESTHKML 412
M G+ P T+ +L
Sbjct: 333 M---GVTPDVHTYTIL 345
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 103/249 (41%), Gaps = 25/249 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D +++L++ + + + K K + F LI+G C + + A
Sbjct: 960 DLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFH 1019
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++ GF + VSY I C+ D R L+++ + KP V+ ++ AL K
Sbjct: 1020 DKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKH 1079
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIF-------------ILSKAVRFLI------Y 336
+ + +A ++ +M D Y++LI+ +L+K V I Y
Sbjct: 1080 QLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTY 1139
Query: 337 NTMISSACVRSEE--GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
N ++ + C ++ +L + K+E++ CK + T + K V L+
Sbjct: 1140 NILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDK---VEKLL 1196
Query: 395 REMLSKGIV 403
EM+++G++
Sbjct: 1197 HEMIARGLL 1205
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 65/149 (43%), Gaps = 1/149 (0%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQ 240
S L+D L K + + + + + D ++ I + LI G CK D A +M
Sbjct: 378 SSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKD 437
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ ++T ++ C+ + +++ KG +V T +++ K + E
Sbjct: 438 QGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEE 497
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
AL + KM+ + C+ D + +I L K
Sbjct: 498 ALTMLSKMEDNGCIPDAVTFEIIIIALFK 526
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/219 (19%), Positives = 95/219 (43%), Gaps = 23/219 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++LI+ +C + + + ++ + G+ PD +++T I C + K + ++
Sbjct: 964 LNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLL 1023
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+G + + ++ +++ + K A+K+ K+ D LT +
Sbjct: 1024 AQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKI--DGRLTKPD--------------VV 1067
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+YNT+I + C A L ++ D T+ + C ++K+ + +LN
Sbjct: 1068 MYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLN-- 1125
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433
+M+ K I P T+ +L + L K+ K+ +DE L+
Sbjct: 1126 -KMVLKTINPNVRTYNILVDALCKE----GKDLLDESLS 1159
>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
sativus]
Length = 681
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 102/234 (43%), Gaps = 23/234 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC--ISLSSQIFDVLIHG-WCKTRKSDYAQKAMKEM 238
++D + K A + K ++ I + I+ +I G W R SD A EM
Sbjct: 217 GTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSD-AHNLYTEM 275
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
+ G PD +Y C I+ +C + + L+EM E+ P+V+T + +++A K ++
Sbjct: 276 QEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKF 335
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK 358
+EA ++Y++M + +T + YN+MI C ++ A +
Sbjct: 336 FEAEELYDEMLPRGIIPNT----------------ITYNSMIDGFCKQNRLDAAEHMFYV 379
Query: 359 IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C PD T + C KR+ DG L+ EM G+V +T+ L
Sbjct: 380 MATKGCSPDVFTFNTLIDGYCGAKRIDDGT---ELLHEMTETGLVADTTTYNTL 430
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 131/330 (39%), Gaps = 51/330 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY+A++ A K +KF EL E+ L G + +T + ++D K+
Sbjct: 321 TYSALINAYVKERKFFEAEELYDEM--LPRGIIP-----------NTITYNSMIDGFCKQ 367
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
N + A +F + K C S F+ LI G+C ++ D + + EM + G D +
Sbjct: 368 NRLDAAEHMFYVMATKGC-SPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTT 426
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y I +C D ++M G P ++TC ++ L ++ +AL++++ M+
Sbjct: 427 YNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 486
Query: 310 S-----------DDCLTDTSFYSSLIFILSKAVRFL-------------------IYNTM 339
+ D Y+ LI L +FL Y++M
Sbjct: 487 KSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSM 546
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I+ C +S A ++ + S PD T + C R+ DG L L EM
Sbjct: 547 INGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDG---LELFCEMGR 603
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERID 429
+GIV T+ L K +GN +D
Sbjct: 604 RGIVADAITYITLIHGFRK--VGNINGALD 631
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F++LI +C K +A ++ + GF PD V+++ + C E + +M
Sbjct: 115 FNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM- 173
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
C+P+V+T T +M+ L + ++ EA+ + ++M D + +
Sbjct: 174 ---CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQ----------------I 214
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDS-CKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
Y T++ C + +AL L +K+EE S KP+ ++ + R D NL
Sbjct: 215 TYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAH---NL 271
Query: 394 MREMLSKGIVPQESTHKMLAE 414
EM KGI P T+ + +
Sbjct: 272 YTEMQEKGIFPDLFTYNCMID 292
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 93/238 (39%), Gaps = 29/238 (12%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
T+TG + TYN ++ F L+ +L +D LS +S D
Sbjct: 416 TETGLVADTTTYNTLIHG------FCLVGDLNAALD-LSQQMISSGVCP------DIVTC 462
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK------------DCISLSSQIFDVLIHGWCKTRKSD 229
+ L+D L + A ++F + + + Q +++LI G K
Sbjct: 463 NTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFL 522
Query: 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289
A++ KEM G P+ ++Y+ I C++ + M K P V+T ++
Sbjct: 523 EAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLV 582
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL----IYNTMISSA 343
KA ++ + L+++ +M + D Y +LI K I+ MISS
Sbjct: 583 SGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSG 640
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 14/180 (7%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+TYN ++ L KF EL KE+ G V +T S +++ L K
Sbjct: 506 QTYNILISGLINEGKFLEAEELYKEMPH--RGIVP-----------NTITYSSMINGLCK 552
Query: 191 RNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
++ + A ++F S F+ L+ G+CK + D + EM + G D ++
Sbjct: 553 QSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAIT 612
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y I + + + +EM G P IT ++ L +++ A+ + E ++
Sbjct: 613 YITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDLQ 672
>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 594
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 126/316 (39%), Gaps = 48/316 (15%)
Query: 132 TYNAMVEAL-----GKSKKFGLMWELVKE-------------IDELSNGYVSLAAMSTV- 172
TYN +++ L G + GL E+V E +D + L A S V
Sbjct: 252 TYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAESVVG 311
Query: 173 -MRRLDTRAMSVLMDTLVK----RNSVAHAYKVF----LKFKDCISLSSQIFDVLIHGWC 223
M R+ V ++L+ R+ + A +VF + + C+ S + LIHGWC
Sbjct: 312 FMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVREGEGCLP-SVVTHNSLIHGWC 370
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
K ++ D A + EM G PD ++T I +C K M+E G P++
Sbjct: 371 KVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCEVKKPLAARELFFTMKEHGQVPNLQ 430
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSA 343
TC +V+ L K EA+ ++ M D +IYN M+
Sbjct: 431 TCAVVLDGLLKCWLDSEAVTLFRAMMKSGLDLD----------------IVIYNIMLDGM 474
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
C + +A KL + K D T+ +K C + + D L+R+M G
Sbjct: 475 CKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAE---ELLRKMKENGCP 531
Query: 404 PQESTHKMLAEELEKK 419
P + ++ + + L +K
Sbjct: 532 PNKCSYNVFVQGLLRK 547
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 113/271 (41%), Gaps = 27/271 (9%)
Query: 162 GYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIH 220
G+ L M+ + ++ +++ L V HA + K ++ +++ + L++
Sbjct: 129 GFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLVEKMENLGYHCNARTYGALVN 188
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G CK + A + +K+M + P+ V Y ++ C+ + L EM +P
Sbjct: 189 GLCKIGDTSGALECLKKMVKRNLGPNVVVYNAILDGLCKRGLVGEALGLLHEMGVVNVEP 248
Query: 281 SVITCTIVMHAL-EKAKQIYEALKVYEKMKSD----------DCLTDTSFYSSLIFILSK 329
+V+T ++ L + E + ++ +M ++ L D L+
Sbjct: 249 NVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAES 308
Query: 330 AVRFLI----------YNTMISSACVRSEEGNALKLRQKI--EEDSCKPDCETHARSLKM 377
V F++ YN++I+ C+RS+ A+++ + E + C P TH +
Sbjct: 309 VVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHG 368
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
C K + M +L+ EM+ KG+ P T
Sbjct: 369 WCKVKEVDKAM---SLLSEMVGKGLDPDVFT 396
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Query: 182 SVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+V++D L+K + A +F K + L I+++++ G CK K + A+K + +
Sbjct: 433 AVVLDGLLKCWLDSEAVTLFRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSCVLV 492
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G D +Y I+ CRE + L++M+E GC P+ + + + L + I
Sbjct: 493 KGLKIDSYTYNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSYNVFVQGLLRKYDIAR 552
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILS 328
+ K + MK D + LI LS
Sbjct: 553 SRKYLQIMKDKGFPVDATTAELLIRFLS 580
>gi|358348674|ref|XP_003638369.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355504304|gb|AES85507.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 501
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/342 (21%), Positives = 139/342 (40%), Gaps = 66/342 (19%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F W Q Y HT Y+ ++ + K+F +W LV E+ + GY + A ++ R
Sbjct: 148 FVWCGQQEDYRHTANAYHLIMNIYAECKEFKALWRLVDEM--IGKGYKATARTFNILIR- 204
Query: 177 DTRAMSVLMDTLVKR----------------NSVAHAYKVFLKFKDC----------ISL 210
T + L TLV+R N++ H++ V ++K
Sbjct: 205 -TCGEAGLAKTLVERFIKSKSFNYRPFKHSYNAILHSFLVLNQYKLIEWVYEQMLLDGGF 263
Query: 211 SSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI-------------- 254
SS I ++++I+ + K D + EM ++GFSPD +Y +
Sbjct: 264 SSDILTYNIVIYAKYRLGKVDQVLTLLGEMDRNGFSPDFHTYNILLHAISKGDIGKGDLD 323
Query: 255 -EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
E +EK+ K L M+E G +P+V+ T ++ +A ++ + +MK + C
Sbjct: 324 KEDLGKEKEQFKALKLLNYMRETGIEPTVLHFTTLIDGFSRAGKLDACQYFFNEMKKNGC 383
Query: 314 LTDTSFYSSLI--FILSKAV-----------------RFLIYNTMISSACVRSEEGNALK 354
+ D Y+ +I +++++ + YN+MI C+ + A
Sbjct: 384 MPDVVAYTVMITGYVVARELEKAQEMFEEMLSKELVPNVFTYNSMIRGLCMAGKFDEACS 443
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
+ +++E C P+ + + + R+ D V+ M E
Sbjct: 444 MFKEMERKGCSPNSVVYITLVSCLRNAGRVADAREVIKQMTE 485
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ V+I G+ R+ + AQ+ +EM P+ +Y I C F + KEM+
Sbjct: 390 YTVMITGYVVARELEKAQEMFEEMLSKELVPNVFTYNSMIRGLCMAGKFDEACSMFKEME 449
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
KGC P+ + ++ L A ++ +A +V ++M T+T Y+ L+
Sbjct: 450 RKGCSPNSVVYITLVSCLRNAGRVADAREVIKQM------TETGKYAHLL 493
>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 840
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 111/246 (45%), Gaps = 23/246 (9%)
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKA 234
LD ++++D +KR + A K++ + + IS + F+ L++G+C RK A++
Sbjct: 524 LDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRL 583
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ + HG P+ V+YT + YC E + + + L EM+ K P+ IT T+V+ L K
Sbjct: 584 LDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCK 643
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LI 335
++ E+ ++ E M + D Y+++I KA +
Sbjct: 644 QWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVT 703
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
YN +I+ CV + +A L ++ + + +K C K + ++ R
Sbjct: 704 YNILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYF---R 760
Query: 396 EMLSKG 401
+M+ KG
Sbjct: 761 QMVEKG 766
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 28/220 (12%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK--- 271
+ VLI G C+ + A K KEM HGF +S T + C+ R+VD K
Sbjct: 389 YTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKS---RQVDVAFKLFC 445
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-- 329
EM+ G +P +IT + ++H L K ++ +A+ +YEKM S+ + ++ + +++ L +
Sbjct: 446 EMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKG 505
Query: 330 -----------------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
++ ++YN MI R A+KL +++ E P T
Sbjct: 506 KISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFN 565
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C +++ +L+ ++ G+ P T+ L
Sbjct: 566 SLMYGFCINRKLSQARRLLDTIK---LHGLEPNAVTYTTL 602
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 131/332 (39%), Gaps = 46/332 (13%)
Query: 126 YMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
++ + +TYN+++ L S +MW++ EI VS S S+++
Sbjct: 210 FIVSIQTYNSLLYNLRHSN---IMWDVYNEIK------VSGTPQSEYTS-------SIVV 253
Query: 186 DTLVKRNSVAHAYKVFLKFKDC----ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
D L +++ A L F+D S F+ ++ +CK D A+ M +H
Sbjct: 254 DGLCRQSRFQDA---VLFFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKH 310
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD SY I C + +M+ G +P ++T I+ I A
Sbjct: 311 GLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNILAKGFRLLGLINGA 370
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIF-----------------ILSKAVRFLIYNT--MISS 342
+ +KM + Y+ LI ++S + I ++ ++ S
Sbjct: 371 WNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGS 430
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C + A KL ++E + +PD T++ + C + ++ +L L +M S I
Sbjct: 431 LCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAIL---LYEKMCSNRI 487
Query: 403 VPQESTHKMLAEEL-EKKSLGNAKERIDELLT 433
+P H + L EK + A+ D L+T
Sbjct: 488 IPNSLIHGAILMGLCEKGKISQARMYFDYLIT 519
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 99/215 (46%), Gaps = 23/215 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++L G+ + A +++M G +P+ V+YT I +C+ + + KEM
Sbjct: 354 YNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMI 413
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
G + S+I+ T+++ +L K++Q+ A K++ +M+++ D +
Sbjct: 414 SHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPD----------------LI 457
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN-L 393
Y+T+I C + E A+ L +K+ + P+ H L C K ++ + + L
Sbjct: 458 TYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYL 517
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
+ LS I+ + ++ + K+ GN +E +
Sbjct: 518 ITSNLSLDII----LYNIMIDGYIKR--GNTREAV 546
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/318 (19%), Positives = 138/318 (43%), Gaps = 40/318 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G+ + + ++ +L KS++ + ++L E++ +NG R D S L
Sbjct: 416 GFQLSIISSTVLLGSLCKSRQVDVAFKLFCEME--ANGL-----------RPDLITYSTL 462
Query: 185 MDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+ L K+ V A ++ K + I +S I ++ G C+ K A+ +
Sbjct: 463 IHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNL 522
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
S D + Y I+ Y + + R+ K++ EKG P+++T +M+ +++ +A +
Sbjct: 523 SLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARR 582
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA---LKLRQKIE 360
+ + +K + + Y T+++ C EEGN L+L +++
Sbjct: 583 LLDTIKLHGLEPNA----------------VTYTTLMNVYC---EEGNMQSLLELLSEMK 623
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK-K 419
+ P T+ +K C + ++++ L+ +M + G+ P + ++ + + K +
Sbjct: 624 AKAIGPTHITYTVVIKGLCKQWKLQES---CQLLEDMDAVGLTPDQVSYNTIIQAFCKAR 680
Query: 420 SLGNAKERIDELLTHATE 437
+ A + D++L H E
Sbjct: 681 DMRKAFQLYDKMLLHNLE 698
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 46/115 (40%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I +CK R A + +M H P V+Y I +C D + D L +Q
Sbjct: 669 YNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNLLVSLQ 728
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
+ + T ++ A + +A+ + +M YS++I L K
Sbjct: 729 NRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVIGRLCK 783
Score = 38.1 bits (87), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
+S +++LI+G+C A + + + + +YT I+ +C + D K
Sbjct: 700 TSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYF 759
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
++M EKG + S+ + V+ L K + EA + M SD D + L+
Sbjct: 760 RQMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMMLSDGVCPDQDLFEVLL 813
>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 117/273 (42%), Gaps = 23/273 (8%)
Query: 162 GYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIH 220
G+V + M + D S L++ L K + V A +F + + + + + F LI
Sbjct: 280 GFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLID 339
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G CK K D A + + M G PD ++Y I CR+ D ++ L EM G KP
Sbjct: 340 GQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKP 399
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRFL 334
IT T +M K + AL++ ++M + D +++LI L + A R L
Sbjct: 400 DKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERML 459
Query: 335 -------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
Y +I C + + KL ++++ D P T+ + C +
Sbjct: 460 KDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQ 519
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+MK+ + L+ ML+ +VP + T +L +
Sbjct: 520 GQMKNAKM---LLHAMLNMEVVPNDITFNILLD 549
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 103/231 (44%), Gaps = 29/231 (12%)
Query: 195 AHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
H ++ +L+ D + +F++L+HG+CK A+ E+ + G P VS+
Sbjct: 208 GHCWEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTL 267
Query: 254 IEHYCREKDFRKVDYTLKE-MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I YCR K+ + + LK M+ + P V T + +++ L K ++ EA ++++M
Sbjct: 268 ISGYCRSKNVEE-GFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMG 326
Query: 313 CLTDTSFYSSLI-----------------FILSKAVR--FLIYNTMISSACVRSEEGNAL 353
+ + +++LI + + +R + YN +I+ C + A
Sbjct: 327 LVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEAR 386
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML--VLNLMREMLSKGI 402
KL ++ + KPD T + CC KDG + L + M+ +GI
Sbjct: 387 KLLNEMIGNGFKPDKITFTTLMDGCC-----KDGDMDSALEIKDRMVEEGI 432
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 80/197 (40%), Gaps = 22/197 (11%)
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
E+ +G+ P+ + + +C+ D E+ +G +PSV++ ++ ++K
Sbjct: 216 EVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSK 275
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYN 337
+ E + M+S+ D YS+LI L K R + +
Sbjct: 276 NVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFT 335
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
T+I C + AL+ + +++ +PD T+ + C +K+ +LN EM
Sbjct: 336 TLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLN---EM 392
Query: 398 LSKGIVPQESTHKMLAE 414
+ G P + T L +
Sbjct: 393 IGNGFKPDKITFTTLMD 409
>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 418
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 118/275 (42%), Gaps = 31/275 (11%)
Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSV 194
K+GL +V + L NGY+ L + R + D SVL++ L K + +
Sbjct: 164 KWGLRPSVV-SFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKM 222
Query: 195 AHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A ++F + D + + F LI G CK + D A + K+M SPD ++Y
Sbjct: 223 DDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
I CR+ D ++ + EM KG KP IT T ++ K + A + ++M ++
Sbjct: 283 IYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENI 342
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
D Y++LI L + R+L +A K+ +++ KPD T+
Sbjct: 343 QLDDVGYTALISGLCQEGRYL----------------DAEKVLREMLSVGLKPDTITYTM 386
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+ C K + G L++EM G +P T
Sbjct: 387 IINEFCKKGDVWTGS---KLLKEMQRDGQMPSVVT 418
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 100/264 (37%), Gaps = 57/264 (21%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMK---------------------------------- 236
S F++L+H +CK AQ
Sbjct: 135 SLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLK 194
Query: 237 -EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M G PD +Y+ I C+E + EM +KG P+ +T T ++ K
Sbjct: 195 TAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKN 254
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS-----KAVRFLI--------------Y 336
++ A+++Y++M S D Y++LI+ L K R LI Y
Sbjct: 255 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITY 314
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
T+I C + A + R+++ +++ + D + + C + R D VL RE
Sbjct: 315 TTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVL---RE 371
Query: 397 MLSKGIVPQESTHKMLAEELEKKS 420
MLS G+ P T+ M+ E KK
Sbjct: 372 MLSVGLKPDTITYTMIINEFCKKG 395
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/198 (19%), Positives = 78/198 (39%), Gaps = 22/198 (11%)
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+E+ + G+ + + +C++ D R + + G +PSV++ +M+ +
Sbjct: 125 EEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRL 184
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIY 336
+ E ++ M + D YS LI L K + + +
Sbjct: 185 GDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTF 244
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
T+I C A+++ +++ S PD T+ + C K +K +L+ E
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQAR---DLIDE 301
Query: 397 MLSKGIVPQESTHKMLAE 414
M KG+ P + T+ L +
Sbjct: 302 MSMKGLKPDKITYTTLID 319
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 19/161 (11%)
Query: 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
+EH + K F+ V +E+ E G S+ I+MH K I A V+ +
Sbjct: 108 LEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVF------NA 161
Query: 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
+T S++ +NT+++ + +L+ + +PD T++
Sbjct: 162 ITKWGLRPSVV----------SFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSV 211
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ C + +M D L EML KG+VP T L +
Sbjct: 212 LINGLCKESKMDDAN---ELFDEMLDKGLVPNGVTFTTLID 249
>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
Length = 609
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 18/202 (8%)
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
K AQ + + G P V+YT + R+K F+ + L EM+E G KP I
Sbjct: 72 KPQEAQFIFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLN 131
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR 346
+++A ++ + EA+++++KM+ C TS +++LI +R
Sbjct: 132 AIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIK---------------GYGIIR 176
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
E + L + KP+ T+ + C KK +K+ N++ +ML+ G+ P
Sbjct: 177 KPEESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKE---AWNVVHQMLASGVQPDV 233
Query: 407 STHKMLAEELEKKSLGNAKERI 428
T+ LA + N E I
Sbjct: 234 VTYNTLARAYAQDGETNKAESI 255
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 123/316 (38%), Gaps = 43/316 (13%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMS 170
+ G+ T TY A+V AL + K+F + L+ E++E + N + +
Sbjct: 85 EQGHRPTTVTYTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLNAIINAFSESGNVK 144
Query: 171 TVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL------------SSQIFDVL 218
M S T N++ Y + K ++ + L +++ +++L
Sbjct: 145 EAMEIFQKMEESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYNIL 204
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
+ CK + A + +M G PD V+Y Y ++ + K + + +M K
Sbjct: 205 VGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNKKV 264
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNT 338
P+ TC I++ + + EAL+V +M+ D + +L+ I+N+
Sbjct: 265 NPNERTCGIIVGGYCEQGNLAEALRVVYRMR------DLGIHPNLV----------IFNS 308
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+I + K +EE KPD T + + RM + + +ML
Sbjct: 309 LIKGFLDIGDSDGVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFD---DML 365
Query: 399 SKGIVPQESTHKMLAE 414
GI P +LA+
Sbjct: 366 KSGIEPDIHVFSILAK 381
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 130/310 (41%), Gaps = 50/310 (16%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNG-------YVSLA-----------AMSTVM 173
TYN +V AL K K W +V ++ L++G Y +LA A S ++
Sbjct: 200 TYNILVGALCKKKSIKEAWNVVHQM--LASGVQPDVVTYNTLARAYAQDGETNKAESIIV 257
Query: 174 RRLDT------RAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTR 226
L+ R +++ ++ ++A A +V + +D I + IF+ LI G+
Sbjct: 258 DMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLDIG 317
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
SD KA+ M + G PD ++++ + + K +M + G +P + +
Sbjct: 318 DSDGVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFS 377
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR--FLIYNTMISSAC 344
I+ +A E +K++ L S Y VR +I+ T+IS C
Sbjct: 378 ILAKGFVRAG---------EPVKAESLLNFMSKY---------GVRPNVVIFTTIISGWC 419
Query: 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ A K+ + + + P+ +T + K+ +L +M EM +VP
Sbjct: 420 TAGKMEKAWKVFEHMCDMDVSPNLKTFETLIWGYGEAKQPWRAEEILQMMEEM---NVVP 476
Query: 405 QESTHKMLAE 414
+ ST K+++E
Sbjct: 477 ENSTLKLVSE 486
>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Glycine max]
Length = 546
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 122/286 (42%), Gaps = 39/286 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
+N +V+ K+ +E+V+E+ Y +L ST LMD L +
Sbjct: 235 VFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYST------------LMDGLCRN 282
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
V A+ +F + +D I ++VLI+G+C+ K D A+ ++ M +G P+ +
Sbjct: 283 GRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYN 342
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y+ ++ C+ L E++ G KP +T T +++ L + + EA+++ E+MK
Sbjct: 343 YSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMK 402
Query: 310 SDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC---KP 366
+ C D+ + +N ++ C + AL + +K+ + K
Sbjct: 403 ENGCQADS----------------VTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKG 446
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
SL C KR K+ L+ ML +G P +T L
Sbjct: 447 SYRIVLNSLTQKCELKRAKE------LLGLMLRRGFQPHYATSNEL 486
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/365 (20%), Positives = 157/365 (43%), Gaps = 54/365 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKF-------------------GLMWELVKEI- 156
F Q G+ H TY +++ L + F G+ L+K
Sbjct: 113 FNMVSEQNGFQHNNATYATILDKLARCNNFHAVDRVLHQMTYETCKFHEGIFVNLMKHFS 172
Query: 157 -----DELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211
++L + Y S+ + V + +A+S ++ L+ N V A K+ L K ++
Sbjct: 173 KSSLHEKLLHAYFSIQPI--VREKPSPKALSTCLNLLLDSNRVDLARKLLLHAKRDLTRK 230
Query: 212 SQ--IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS-PDGVSYTCFIEHYCREKDFRKVDY 268
+F++L+ CK D A + ++EM FS P+ V+Y+ ++ CR ++
Sbjct: 231 PNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFD 290
Query: 269 TLKEMQEKG-CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+EM + P +T ++++ + + A V + MKS+ C + YS+L+ L
Sbjct: 291 LFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGL 350
Query: 328 SKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
K + + Y ++I+ C + A++L ++++E+ C+ D
Sbjct: 351 CKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQADS 410
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK-SLGNAKER 427
T L C + + ++ L+++ ++ +G+ + +++++ L +K L AKE
Sbjct: 411 VTFNVLLGGLCREGKFEEA---LDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAKEL 467
Query: 428 IDELL 432
+ +L
Sbjct: 468 LGLML 472
>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
sativus]
Length = 686
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 129/319 (40%), Gaps = 49/319 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T++A++ A K KF E +EL + + + + + T S ++D K+
Sbjct: 325 TFSALINAFVKEGKF-------FEAEELYDEMLPRSIIPS------TVTYSSMIDGFCKQ 371
Query: 192 NSVAHAYKVFL--KFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
N + A +F K C S F+ LI G+C+ ++ D K + EM + G + ++
Sbjct: 372 NRLDAAEHMFYLTPTKGC-SPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTIT 430
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
YT I +C+ D L+EM G P+V+TC ++ L ++ +AL++++ M+
Sbjct: 431 YTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQ 490
Query: 310 S-----------DDCLTDTSFYSSLIFILSKAVRFL-------------------IYNTM 339
+ D Y+ LI L +FL Y++M
Sbjct: 491 KSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 550
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I C +S A ++ + S PD T + C + DG L L EM
Sbjct: 551 IDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDG---LELFCEMGQ 607
Query: 400 KGIVPQESTHKMLAEELEK 418
+GIV T+ L K
Sbjct: 608 RGIVADAITYITLIYGFRK 626
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 81/357 (22%), Positives = 137/357 (38%), Gaps = 52/357 (14%)
Query: 112 LKCFCF---------TWAK-TQTGYMHTPETYNAMVEALGKSKKFGLMWEL--------V 153
+KCFC T+ K T+ G+ T T+N ++ L + +L V
Sbjct: 123 MKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQMCKPNV 182
Query: 154 KEIDELSNGYVSLAAMSTVMRRLDTR----------AMSVLMDTLVKRNSVAHAYKVFLK 203
L NG + + LD ++D + K A + K
Sbjct: 183 VTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRK 242
Query: 204 FKDC--ISLSSQIFDVLIHG-WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
++ I + I++ +I G W R SD A EM + PD V+Y C I +C
Sbjct: 243 MEEVSHIIPNVVIYNTIIDGLWKDGRHSD-AHNLFIEMQEKEIFPDIVTYNCMINGFCIS 301
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
+ + L+EM E+ P V+T + +++A K + +EA ++Y++M + T Y
Sbjct: 302 GRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTY 361
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
SS MI C ++ A + C PD T + C
Sbjct: 362 SS----------------MIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCR 405
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHAT 436
KR+ DG + L+ EM G+V T+ L + L A++ + E+++
Sbjct: 406 AKRVDDG---IKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGV 459
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 28/242 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F +L+ +C K +A ++ + GF P V++ + C E + +M
Sbjct: 119 FTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQM- 177
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
CKP+V+T T +M+ L + ++ EA+ + ++M D + Y +++ + K
Sbjct: 178 ---CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTV 234
Query: 330 -AVRFL--------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
A+ L IYNT+I +A L +++E PD T+
Sbjct: 235 SALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCM 294
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLT 433
+ C R D L++EML + I P T L K+ A+E DE+L
Sbjct: 295 INGFCISGRWSDAE---QLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLP 351
Query: 434 HA 435
+
Sbjct: 352 RS 353
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 4/135 (2%)
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
Q +++LI G K A++ +EM G PD ++Y+ I+ C++ +
Sbjct: 510 QTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 569
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M K P V+T ++ KA + + L+++ +M + D Y +LI+ K
Sbjct: 570 MGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDN 629
Query: 333 ----FLIYNTMISSA 343
I+ MISS
Sbjct: 630 IDGALDIFQEMISSG 644
>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
Length = 821
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 137/330 (41%), Gaps = 38/330 (11%)
Query: 85 EDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSK 144
+D+ DV + IL Y K A+ F ++G T TYN M++ GK
Sbjct: 203 DDYSLDVRAYTTILHS-YSRCGKYERAVAIF---EKMNESGLSPTLVTYNVMLDVYGK-- 256
Query: 145 KFGLMW-ELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK 203
G W +++ +DE+ + + D S ++ + + A + F+
Sbjct: 257 -MGRSWNKILGLLDEMRSKGLGF----------DEFTCSTVISACGREGLLDEAKEFFVG 305
Query: 204 FKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
K + + ++ L+ + K A MKEM + PD V+Y + Y R
Sbjct: 306 LKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGF 365
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
+ + + M E G KP+ +T T +++A +A Q+ +AL +Y++MK C + Y++
Sbjct: 366 YEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNA 425
Query: 323 LIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
++ +L K +S+ +K+ ++ D C P+ T L MC +K
Sbjct: 426 ILGMLGK----------------KSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKG 469
Query: 383 RMKDGMLVLNLMREMLSKGIVPQESTHKML 412
K V + +EM S G P T L
Sbjct: 470 MHK---YVKRVFQEMKSCGFEPDRDTFNTL 496
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/394 (19%), Positives = 148/394 (37%), Gaps = 85/394 (21%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRA- 180
T+ G TY M+ A G++ + L ++ E S ++ + ++ L ++
Sbjct: 377 TENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKE-SGCAPNVCTYNAILGMLGKKSQ 435
Query: 181 ----MSVLMDTLVKR----------------NSVAHAY--KVFLKFKDC-ISLSSQIFDV 217
M +L D V N H Y +VF + K C F+
Sbjct: 436 SEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNT 495
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LI + A+K EM + GF+P +Y + R D+R + +K+M+ KG
Sbjct: 496 LITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKG 555
Query: 278 CKPSVITCTIVMHALEKA----------KQIYEA-------------------------L 302
KPS + ++++++ K K IY+
Sbjct: 556 FKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGME 615
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSK--------AVRFLI-----------YNTMISSA 343
+ ++ ++ D ++S++ + S+ + LI YN+++
Sbjct: 616 RAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLY 675
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
E A ++ ++++ K D ++ +K C + M + + L+ EM+S+GI
Sbjct: 676 ARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLS---EMISRGIR 732
Query: 404 PQESTHKMLAEELEKKSLGNAKERIDELLTHATE 437
P T+ K + IDE+L++ T+
Sbjct: 733 PCIVTYNTFVGGYAAKGM---FAEIDEVLSYMTK 763
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D + LMD + A ++ + ++ S I ++ +I G+C+ A + +
Sbjct: 664 DLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTL 723
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM G P V+Y F+ Y + F ++D L M + C+P+ +T IV+ KA
Sbjct: 724 SEMISRGIRPCIVTYNTFVGGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKA 783
Query: 296 KQIYEAL 302
K+ EA+
Sbjct: 784 KKFKEAM 790
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/286 (16%), Positives = 119/286 (41%), Gaps = 33/286 (11%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ G+ + TYNA++ AL + + ++K++ + G+ + + S
Sbjct: 518 EAGFTPSVATYNALLNALARRGDWRTAESVIKDMK--NKGF-----------KPSETSYS 564
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+++++ K V ++ D I S + LI K R ++A + + +H
Sbjct: 565 LILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGMERAFQALQKH 624
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G+ PD V + + + R+ + + +QE G +P ++T +M + + ++A
Sbjct: 625 GYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECWKA 684
Query: 302 LKVYEKMKSDDCLTDTSFYSSLI-----------------FILSKAVR--FLIYNTMISS 342
++ ++++ +D Y+++I ++S+ +R + YNT +
Sbjct: 685 EEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVGG 744
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
+ ++ + + C+P+ T+ + C K+ K+ M
Sbjct: 745 YAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKAKKFKEAM 790
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/228 (19%), Positives = 97/228 (42%), Gaps = 29/228 (12%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
++L +Q +++ + + A K + +S D +YT + Y R + +
Sbjct: 170 VNLDNQAVELMARILGRESQHSIASKLFDVIPLDDYSLDVRAYTTILHSYSRCGKYERAV 229
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIY-EALKVYEKMKSDDCLTDTSFYSSLI-- 324
++M E G P+++T +++ K + + + L + ++M+S D S++I
Sbjct: 230 AIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFTCSTVISA 289
Query: 325 ----FILSKAVRFLI-------------YNTMI---SSACVRSEEGNALKLRQKIEEDSC 364
+L +A F + YN ++ A + SE AL + +++E+++C
Sbjct: 290 CGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIYSE---ALSIMKEMEDNNC 346
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
PD T+ + ++G +++ M E GI P T+ +
Sbjct: 347 PPDAVTYNELVAAYVRAGFYEEGAALIDTMTE---NGIKPNAVTYTTM 391
>gi|21554346|gb|AAM63453.1| unknown [Arabidopsis thaliana]
Length = 521
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 88/415 (21%), Positives = 172/415 (41%), Gaps = 66/415 (15%)
Query: 68 ESLKLNEQSRISSHALSEDHETDVDKVSEILRKRY----PSPDKVVEALK--------CF 115
ESL NE + S L+ + + + +S+ + P+PD +++ L
Sbjct: 68 ESLDSNEIALSFSKELTGNPDAESQTISQRFNLSFSHITPNPDLILQTLNLSPEAGRAAL 127
Query: 116 CFT-WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR 174
F W + + + HT ET + V+ G+ K F M ++ + ++ G +A+ ++R
Sbjct: 128 GFNEWLDSNSNFSHTDETVSFFVDYFGRRKDFKGMLGIISKYKGIAGGKTLESAIDRLVR 187
Query: 175 --------------------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
+ D ++++++ L ++ + A K+ + I I
Sbjct: 188 AGRPKQVTDFFEKMENDYGLKRDKESLTLVVKKLCEKGHASIAEKMVKNTANEIFPDENI 247
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE---HYCREKD-FR---KVD 267
D+LI GWC K D A + EM + GF +Y ++ CR+KD F+ +V+
Sbjct: 248 CDLLISGWCIAEKLDEATRLAGEMSRGGFEIGTKAYNMMLDCVCKLCRKKDPFKLQPEVE 307
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
L EM+ +G + T ++++ L K ++ EA+ ++ +M C D Y LI L
Sbjct: 308 KVLLEMEFRGVPRNTETFNVLINNLCKIRRTEEAMTLFGRMGEWGCQPDAETYLVLIRSL 367
Query: 328 SKAVRFLIYNTMISSA---------------------CVRSEEGNALKLRQKIEEDSCKP 366
+A R + MI C +A+ + + ++ + CKP
Sbjct: 368 YQAARIGEGDEMIDKMKSAGYGELLNKKEYYGFLKILCGIERLEHAMSVFKSMKANGCKP 427
Query: 367 DCETHARSL-KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+T+ + KMC + + + L +E KGI +++ ++KK+
Sbjct: 428 GIKTYDLLMGKMCANNQLTRAN----GLYKEAAKKGIAVSPKEYRVDPRFMKKKT 478
>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Glycine max]
Length = 615
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 22/219 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F LI G CK K D A K + M G PD V+Y I C+ D ++ + EM
Sbjct: 356 FTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMT 415
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
G KP IT T ++ K + AL++ +M + D +++LI L +
Sbjct: 416 ASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVH 475
Query: 330 -AVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
A R L Y +I C + + KL ++++ D P T+ +
Sbjct: 476 DAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALM 535
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
C + +MK+ ++L+ ML+ G+ P + T+ +L +
Sbjct: 536 NGLCKQGQMKNAKMLLD---AMLNVGVAPNDITYNILLD 571
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 86/203 (42%), Gaps = 17/203 (8%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL 166
KV ALK F A+ G TYNA++ L K LV E
Sbjct: 368 KVDLALKNFQMMLAQ---GVRPDLVTYNALINGLCKVGDLKEARRLVNE----------- 413
Query: 167 AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKT 225
M+ + D + L+D K + A ++ + ++ I L F LI G C+
Sbjct: 414 --MTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCRE 471
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
+ A + + +M GF PD +YT I+ +C++ D + LKEMQ G P V+T
Sbjct: 472 GRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTY 531
Query: 286 TIVMHALEKAKQIYEALKVYEKM 308
+M+ L K Q+ A + + M
Sbjct: 532 NALMNGLCKQGQMKNAKMLLDAM 554
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 22/208 (10%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F+VL+HG+CK A+ E+ + G P VS+ I C+ D + M
Sbjct: 250 FFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVM 309
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--------- 324
+ +G P V T + +++ L K ++ E ++++M + + +++LI
Sbjct: 310 ESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKV 369
Query: 325 --------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
+L++ VR + YN +I+ C + A +L ++ KPD T
Sbjct: 370 DLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTL 429
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGI 402
+ CC M+ L + R M+ +GI
Sbjct: 430 IDGCCKDGDMES---ALEIKRRMVEEGI 454
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 78/197 (39%), Gaps = 22/197 (11%)
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
E+ G+ P + + +C+ D E+ ++G +P+V++ ++ K+
Sbjct: 238 EVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSG 297
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYN 337
+ E ++ M+S+ D +S+LI L K R + +
Sbjct: 298 DVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFT 357
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
T+I C + ALK Q + +PD T+ + C +K+ ++N EM
Sbjct: 358 TLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVN---EM 414
Query: 398 LSKGIVPQESTHKMLAE 414
+ G+ P + T L +
Sbjct: 415 TASGLKPDKITFTTLID 431
>gi|357511073|ref|XP_003625825.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500840|gb|AES82043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 485
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 119/297 (40%), Gaps = 54/297 (18%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T+N ++ + KFG E+ E MR++ V +TL+K
Sbjct: 215 TFNILISGYCRDFKFGFALEMFDE-----------------MRKMGCHPNVVTFNTLIKG 257
Query: 192 --------NSVAHAYKVFLKFKDCISLSSQIFDV----LIHGWCKTRKSDYAQKAMKEMF 239
+ Y++ I L Q+ DV L+ G CK + + E
Sbjct: 258 LFRECRVDEGIGMVYEM-------IELGCQLSDVTCEILVDGLCKEGRVSQVCDLLMEFS 310
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ G P G Y +E C + + K + E+ KGC PS+I+C +++ L +I
Sbjct: 311 KRGVLPKGYDYFVLVEILCGKGEAFKALEVIYELWSKGCVPSLISCIVMIDGLRGLGKIE 370
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
EA+++ EKM ++ + + + +N+++ C +A +LR
Sbjct: 371 EAMRLVEKMLKEEGM---------------VLDVVTFNSVLQDLCDAGRTEDANRLRLLA 415
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+PD T+ + + +G LV+N EML KG +P +++ L + L
Sbjct: 416 SSKGLEPDAMTYKILVAGYRGEGNQSEGELVVN---EMLDKGFIPDLASYNKLMDAL 469
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/315 (21%), Positives = 124/315 (39%), Gaps = 33/315 (10%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEID----ELSNGYVSLAAMSTV 172
F+WA T + H +Y M L S +F L+ L+ I + S S +
Sbjct: 85 FSWASTLDTFSHNHTSYEWMTRTLALSHRFSLLRTLLTFISTNPCQCSQAIFSCPQTEPI 144
Query: 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQ 232
R A+ K + +A+ V + D S + ++LIHG+ K+ + D A
Sbjct: 145 FRF----AIQYYCKAF-KFDDAVYAFNVMRRLIDG-KPSVSVCNILIHGFVKSGRFDRAF 198
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+ +M + PD ++ I YCR+ F EM++ GC P+V+T ++ L
Sbjct: 199 EFYNQMVKDRIKPDVFTFNILISGYCRDFKFGFALEMFDEMRKMGCHPNVVTFNTLIKGL 258
Query: 293 EKAKQIYEALK-VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN 351
+ ++ E + VYE ++ L+D + ++ C
Sbjct: 259 FRECRVDEGIGMVYEMIELGCQLSDVT-----------------CEILVDGLCKEGRVSQ 301
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
L + + P + +++ C K + L ++ E+ SKG VP + +
Sbjct: 302 VCDLLMEFSKRGVLPKGYDYFVLVEILCGK---GEAFKALEVIYELWSKGCVPSLISCIV 358
Query: 412 LAEELEKKSLGNAKE 426
+ + L + LG +E
Sbjct: 359 MIDGL--RGLGKIEE 371
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 138/314 (43%), Gaps = 44/314 (14%)
Query: 127 MHTPETYNAMVEAL---GKSKKFGLMWELVKE--IDELSNGYVSLAAMSTVMRRLDTRAM 181
+HTPET N M+E L G+ + +++L+++ I+ N Y+++ ++ + R
Sbjct: 119 VHTPETCNYMLEFLRVHGRVEDMAFVFDLMQKQVINRNPNTYLTIFKALSI--KGGIRQA 176
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+ + + V +AY S + I+ +L G+CK A K K M
Sbjct: 177 PFALGKMRQAGFVLNAY----------SYNGLIYFLLQPGFCKE-----ALKVYKRMISE 221
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G P +Y+ + R +D + L+EM+ G +P++ T TI + L +A +I +A
Sbjct: 222 GLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDA 281
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----LIYNTMISSA---------CVRSE 348
+ + M+ + C D Y+ LI L A + +Y M +S+ + S+
Sbjct: 282 YGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSK 341
Query: 349 EGNALKLR------QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
GN L ++E D PD T+ ++ C ++ +L++MR +GI
Sbjct: 342 FGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMR---VRGI 398
Query: 403 VPQESTHKMLAEEL 416
VP T+ L L
Sbjct: 399 VPNLHTYNTLISGL 412
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 21/240 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL--SSQIFDVLIHGWCKTRKSDYAQKA 234
D + L+ L K+ A K+F KF + + + ++ L+ G ++ A K
Sbjct: 751 DDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKL 810
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
EM G P+ +Y ++ + + K ++ EM +GCKP++IT I++ AL K
Sbjct: 811 FVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVK 870
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
+ I +AL +Y ++ S D Y LI L KA RSEE A+K
Sbjct: 871 SNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKA--------------GRSEE--AMK 914
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ +++ + CKP+C + + + + +L + M+ +GI P ++ +L E
Sbjct: 915 IFEEMPDYQCKPNCAIYNILINGFGKAGNVN---IACDLFKRMIKEGIRPDLKSYTILVE 971
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 123/290 (42%), Gaps = 44/290 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEI-------DELSNGYV--SLAAMSTVMRRLDTR--- 179
TYN +++A GKSK+ ++EL E+ + +++ + +L +++ + LD
Sbjct: 825 TYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEI 884
Query: 180 ----------AMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRK 227
L+ L+K A K+F + D C + I+++LI+G+ K
Sbjct: 885 ISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQC-KPNCAIYNILINGFGKAGN 943
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
+ A K M + G PD SYT +E + +E++ G P ++ +
Sbjct: 944 VNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNL 1003
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA------------VRFL- 334
+++ L K++++ EAL ++ +MK+ + Y++LI A ++F+
Sbjct: 1004 MINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMG 1063
Query: 335 ------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
YN +I + A + +K+ C P+ T A+ C
Sbjct: 1064 LEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQLPNKC 1113
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 98/259 (37%), Gaps = 57/259 (22%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D ++L++ L K V A+ + ++ + + + ++ LI G R+ D A +
Sbjct: 366 DVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVP-NLHTYNTLISGLLNLRRLDEALEL 424
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL-- 292
M G +P SY FI++Y + D K T ++M+++G PS+ C +++L
Sbjct: 425 FNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAE 484
Query: 293 ---------------------------------EKAKQIYEALKVYEKMKSDDCLTDTSF 319
KA QI +A K+ +M S+ C D
Sbjct: 485 MGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIV 544
Query: 320 YSSLIFILSKAVR-------------------FLIYNTMISSACVRSEEGNALKLRQKIE 360
+SLI L KA R + YN +I+ + AL L ++
Sbjct: 545 VNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMK 604
Query: 361 EDSCKPDCETHARSLKMCC 379
E C P+ T L C
Sbjct: 605 ESGCPPNTVTFNALLDCLC 623
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 85/393 (21%), Positives = 159/393 (40%), Gaps = 49/393 (12%)
Query: 53 SPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEAL 112
SPD + + ++ ++++ +++ + LSE E D+ V+ ++ Y + +V EA
Sbjct: 504 SPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKA-GRVDEAW 562
Query: 113 KCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
+ F T TYN ++ LGK K L+K +D + S +TV
Sbjct: 563 QMF---GRLKDLKLAPTVVTYNILITGLGKEGK------LLKALDLFGSMKESGCPPNTV 613
Query: 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDY 230
+ L+D L K ++V A K+F + +C S ++ +I+G K ++ Y
Sbjct: 614 -------TFNALLDCLCKNDAVDLALKMFCRMTIMNC-SPDVLTYNTIIYGLIKEGRAGY 665
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR-KVDYTLKEMQEKGCKPSVITCTIVM 289
A +M + SPD V+ + ++ + ++ + + G + S +M
Sbjct: 666 AFWFYHQM-KKFLSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELM 724
Query: 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL--------------- 334
+ +I EA+ E + + D + LI +L K + L
Sbjct: 725 ECILIEAEIEEAISFAEGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGT 784
Query: 335 -----IYNTMISS--ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
YN ++ C +E ALKL +++ C P+ T+ L KR+ +
Sbjct: 785 HPTPESYNCLMDGLLGCNITEA--ALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDE- 841
Query: 388 MLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ L EML +G P TH ++ L K +
Sbjct: 842 --LFELYNEMLCRGCKPNIITHNIIISALVKSN 872
>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 418
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 129/314 (41%), Gaps = 44/314 (14%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+T ++E L K K F L+W +E L GY + ++LM + VK
Sbjct: 102 DTCRKVLEHLMKLKYFKLVWGFYEE--SLECGYPA-----------SLYFFNILMHSFVK 148
Query: 191 RNSVAHAYKVFLKFKDCI---SLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+ A VF D I SL + F+ L++G+ K D + M G P
Sbjct: 149 EGEIRLAQSVF----DAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQP 204
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D +Y+ I C+E + EM + G P+ +T T ++ K ++ A+++Y
Sbjct: 205 DVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIY 264
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVR 346
+ M S D Y++LI+ L K + Y T+I C
Sbjct: 265 KLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKE 324
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
+ A + R+++ +++ + D + + C + R D ++REMLS G+ P+
Sbjct: 325 GDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE---KMLREMLSVGLKPEI 381
Query: 407 STHKMLAEELEKKS 420
T+ M+ E KK
Sbjct: 382 GTYTMIINEFCKKG 395
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/388 (23%), Positives = 154/388 (39%), Gaps = 60/388 (15%)
Query: 51 TQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVE 110
TQ D + +++ES L + I + L+++H+ R + + KV+E
Sbjct: 61 TQRSDIYVFSGLITAYLESGFLRDA--IECYRLTKEHK---------FRVPFDTCRKVLE 109
Query: 111 ---ALKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSKKFGLM---------WEL-- 152
LK F W + GY + +N ++ + K + L W L
Sbjct: 110 HLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRP 169
Query: 153 -VKEIDELSNGYVSLA----------AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF 201
V + L NGY+ L AM + D SVL++ L K + + A ++F
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELF 229
Query: 202 LKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260
+ D + + + F LI G CK + D A + K M SPD ++Y I C++
Sbjct: 230 DEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKK 289
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
D ++ + EM KG KP IT T ++ K + A + ++M ++ D Y
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
++L IS C +A K+ +++ KP+ T+ + C
Sbjct: 350 TAL----------------ISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQEST 408
K + G L++EM G +P T
Sbjct: 394 KGDVWTGS---KLLKEMQRDGYMPSVVT 418
>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g19440, chloroplastic-like [Cucumis sativus]
Length = 799
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 93/209 (44%), Gaps = 22/209 (10%)
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+ LIHG C K A + +KEM + G D ++Y I +C E +EM +
Sbjct: 469 NALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTK 528
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-- 333
+G +P + T ++ L ++ +A+K++++ K+ +++ Y ++ KA R
Sbjct: 529 RGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIED 588
Query: 334 -----------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
++YN +I + C AL+L + ++ P+C T++ +
Sbjct: 589 VENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIH 648
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
C+ ++D +L+ EM +G VP
Sbjct: 649 GVCNIGLVEDAK---HLIDEMRKEGFVPN 674
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G+CK + D A+ EM P+ +YT I+ YC+ + K + L +M+
Sbjct: 678 YTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMK 737
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
E G P V+T ++ + KA + A KV ++M ++ D Y++L+
Sbjct: 738 ESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLV 787
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 89/213 (41%), Gaps = 24/213 (11%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
+G + TY M+E K+ + +++++ L N +S L++ ++
Sbjct: 564 SGLISNIHTYGIMMEGYCKANR-------IEDVENLFNELLSKKM------ELNSIVYNI 610
Query: 184 LMDTLVKRNSVAHAYKVFLKFK------DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
++ + +VA A ++ K +C + SS LIHG C + A+ + E
Sbjct: 611 IIKAHCQNGNVAAALQLLENMKSKGILPNCATYSS-----LIHGVCNIGLVEDAKHLIDE 665
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M + GF P+ V YT I YC+ + T EM P+ T T+++ K
Sbjct: 666 MRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGN 725
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
+ +A + KMK + D Y+ L KA
Sbjct: 726 MEKANNLLIKMKESGIVPDVVTYNVLTNGFCKA 758
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 2/147 (1%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + + +++ L K + +A ++F+K K IS + ++ +I+G C+ + D A +
Sbjct: 219 DVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELK 278
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++M G P+ +Y I + F KV++ L EM G P+V+ ++ K
Sbjct: 279 EKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKM 338
Query: 296 KQIYEALKVYEKMKSDDCL-TDTSFYS 321
I ALK+ + M S + T + YS
Sbjct: 339 GNIEGALKIKDVMISKNITPTSVTLYS 365
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 95/241 (39%), Gaps = 23/241 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L+ G C K D A K E G + +Y +E YC+ V+ E+
Sbjct: 538 YNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELL 597
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-----FILSK 329
K + + I I++ A + + AL++ E MKS L + + YSSLI L +
Sbjct: 598 SKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVE 657
Query: 330 AVRFLI--------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ LI Y +I C + A ++ + P+ T+ +
Sbjct: 658 DAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMI 717
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTH 434
C M+ NL+ +M GIVP T+ +L K + + NA + D++ T
Sbjct: 718 DGYCKLGNMEKAN---NLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATE 774
Query: 435 A 435
Sbjct: 775 G 775
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 21/161 (13%)
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
+ KG PS+ TC + +L KA + + +V+ M C SF
Sbjct: 177 LARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVMSEGACPDVFSF------------- 223
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
+I++ C + NA++L K+E+ P+ T+ + C R+ +
Sbjct: 224 ----TNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNA---FE 276
Query: 393 LMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI-DELL 432
L +M KG+ P T+ L L K + + I DE++
Sbjct: 277 LKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMI 317
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 22/180 (12%)
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD S+T I C+ +M++ G P+V+T +++ L + ++ A
Sbjct: 215 GACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNA 274
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISS 342
++ EKM + Y +LI L K F +++N +I
Sbjct: 275 FELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDG 334
Query: 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C ALK++ + + P T ++ C +++ N + E+LS G+
Sbjct: 335 YCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAE---NALEEILSSGL 391
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ V+I G+CK + A + +M + G PD V+Y +C+ D +M
Sbjct: 713 YTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMA 772
Query: 275 EKGCKPSVITCTIVMHA 291
+G IT T ++H
Sbjct: 773 TEGLPVDEITYTTLVHG 789
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 82/222 (36%), Gaps = 22/222 (9%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+F+ LI G+CK + A K M +P V+ ++ +C+ + L+E+
Sbjct: 327 VFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEI 386
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
G C V+H L K + + A + + M S + + L+ L K +
Sbjct: 387 LSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKH 446
Query: 334 L-------------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
L N +I C + A ++ +++ E D T+
Sbjct: 447 LEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNAL 506
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ C++ +++ L EM +GI P T+ L L
Sbjct: 507 ILGFCNEGKVEG---CFRLREEMTKRGIQPDIYTYNFLLRGL 545
>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
Length = 667
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 112/263 (42%), Gaps = 25/263 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
D + + L++ L + + A ++F + ++ L+ G C + + ++
Sbjct: 44 DVVSYATLIEGLCEAGRIDEAVELFGEMD---QPDMHMYAALVKGLCNAERGEEGLLMLR 100
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M + G+ P +Y ++ CRE+ ++ + L+EM EKG P V+TCT V++A K
Sbjct: 101 RMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEG 160
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLI------FILSKAVRFL-------------IYN 337
++ +AL+V E MK C + Y++L+ + KA+ L YN
Sbjct: 161 RMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYN 220
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+I C+ +A +L + +E D D T+ + C R +L +
Sbjct: 221 LLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQA---CSLFDSL 277
Query: 398 LSKGIVPQESTHKMLAEELEKKS 420
++GI P T L L K
Sbjct: 278 ETRGIKPNAVTFNSLINGLCKSG 300
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 110/246 (44%), Gaps = 20/246 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + L++ L K A +F + I ++ F+ LI+G CK+ K+D A K +
Sbjct: 250 DQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFL 309
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++M G +PD +Y+ FIEH C+ K ++ + EM +K KPS + TIV+H L K
Sbjct: 310 EKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKE 369
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ + + +M S C D + Y T + + C+ A +
Sbjct: 370 RNYGLVARTWGEMVSSGCNPDV----------------VTYTTSMRAYCIEGRLNEAENV 413
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
++ ++ D T A + M H + V +++++M S VP + T+ +L
Sbjct: 414 LMEMSKNGVTVD--TMAYNTLMDGHASIGQTDHAV-SILKQMTSVASVPNQFTYFILLRH 470
Query: 416 LEKKSL 421
L + L
Sbjct: 471 LVRMRL 476
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 129/334 (38%), Gaps = 45/334 (13%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMS 170
+ G+ + Y A+V+ + +K E+++E+ E + N Y MS
Sbjct: 104 ELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMS 163
Query: 171 TVMRRLDTRAM----------SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLI 219
+R L+ + + L+ V A + K + C ++ + +++LI
Sbjct: 164 DALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLI 223
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
G C + A + ++ M G D +Y I C++ + ++ +G K
Sbjct: 224 RGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIK 283
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--------------F 325
P+ +T +++ L K+ + A K EKM S C DT YSS I F
Sbjct: 284 PNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSF 343
Query: 326 I---LSKAVRFLIYNTMISSACVRSEEGNALKLRQ--KIEEDSCKPDCETHARSLKMCCH 380
I L K V+ N I + E L R ++ C PD T+ S++ C
Sbjct: 344 IGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCI 403
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ R+ + N++ EM G+ + L +
Sbjct: 404 EGRLNEAE---NVLMEMSKNGVTVDTMAYNTLMD 434
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 26/217 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ LI G+C+T + D A+ +M GF+ D VSY IE C + EM
Sbjct: 13 FNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMD 72
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
+ P + ++ L A++ E L + +MK T Y++++
Sbjct: 73 Q----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAK 128
Query: 325 ---------FILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
F A + +I++ C +AL++ + ++ CKP+ T+ +
Sbjct: 129 EAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALV 188
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C++ ++ M +LN MR + G+ P T+ +L
Sbjct: 189 QGFCNEGKVHKAMTLLNKMR---ACGVNPDAVTYNLL 222
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 23/167 (13%)
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M + G+ PD ++ I YCR +M +G V++ ++ L +A +
Sbjct: 1 MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
I EA++++ +M D Y++L+ L A R EEG L + +
Sbjct: 61 IDEAVELFGEMDQ----PDMHMYAALVKGLCNA--------------ERGEEG--LLMLR 100
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+++E +P +A + C +++ K+ +++EM KG+ P
Sbjct: 101 RMKELGWRPSTRAYAAVVDFRCRERKAKEAE---EMLQEMFEKGLAP 144
>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
Length = 425
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 107/241 (44%), Gaps = 20/241 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D V+++ L KR A+ + K + + I++ +I G CK + D A
Sbjct: 15 DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLF 74
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KEM G P+ V+Y+ I C + L +M E+ P V T + ++ A K
Sbjct: 75 KEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKE 134
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ EA K+Y++M S S++ Y+++I+ C+ A ++
Sbjct: 135 GKLVEAEKLYDEM------VKRSIDPSIV----------TYSSLINGFCMHDRLDEAKQM 178
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ + C PD T+ +K C KR+++GM V REM +G+V T+ +L +
Sbjct: 179 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF---REMSQRGLVGNTVTYNILIQG 235
Query: 416 L 416
L
Sbjct: 236 L 236
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 110/266 (41%), Gaps = 23/266 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D S L+D VK + A K++ + K I S + LI+G+C + D A++
Sbjct: 120 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 179
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ M PD V+Y I+ +C+ K + +EM ++G + +T I++ L +A
Sbjct: 180 EFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQA 239
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
A +++++M SD + YNT++ C + A+ +
Sbjct: 240 GDCDMAQEIFKEMVSD----------------GVPPNIMTYNTLLDGLCKNGKLEKAMVV 283
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ ++ +P T+ ++ C +++DG +L + KG+ P + +
Sbjct: 284 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG---WDLFCNLSLKGVKPDVVAYNTMISG 340
Query: 416 LEKKSLGNAKERIDELLTHATEQRTF 441
+K +KE D L E T
Sbjct: 341 FCRKG---SKEEADALFKEMKEDGTL 363
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 26/228 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G+CK ++ + + +EM Q G + V+Y I+ + D KEM
Sbjct: 194 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMV 253
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
G P+++T ++ L K ++ +A+ V+E ++ Y+ +I + KA +
Sbjct: 254 SDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 313
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ YNTMIS C + + A L ++++ED P+ + +
Sbjct: 314 DGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLI 373
Query: 376 KMCCHKKRMKDG--MLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ R++DG L++EM S G ST ++ L L
Sbjct: 374 -----RARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRL 416
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 14/161 (8%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+Q G + TYN +++ L ++ + E+ KE+ VS +M
Sbjct: 218 SQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM-------VSDGVPPNIM------TY 264
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L+D L K + A VF + + + ++++I G CK K + +
Sbjct: 265 NTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSL 324
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
G PD V+Y I +CR+ + D KEM+E G P+
Sbjct: 325 KGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 365
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
+ M KGC+P ++T +V++ L K A + KM+ L
Sbjct: 4 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGK--------------LEP 49
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
V LIYNT+I C +AL L +++E +P+ T++ + C+ R D
Sbjct: 50 GV--LIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDAS- 106
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATE 437
L+ +M+ + I P T L + K+ L A++ DE++ + +
Sbjct: 107 --RLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 153
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 80/194 (41%), Gaps = 14/194 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +++ K K+ E+ +E+ + G V +T ++L+ L +
Sbjct: 193 TYNTLIKGFCKYKRVEEGMEVFREMSQ--RGLVG-----------NTVTYNILIQGLFQA 239
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
A ++F + D + + ++ L+ G CK K + A + + + P +Y
Sbjct: 240 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 299
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
IE C+ + KG KP V+ ++ + EA ++++MK
Sbjct: 300 NIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKE 359
Query: 311 DDCLTDTSFYSSLI 324
D L ++ Y++LI
Sbjct: 360 DGTLPNSGCYNTLI 373
>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
Length = 741
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 90/219 (41%), Gaps = 22/219 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI+ +C A++ + + + G +PD +YT F+ YCR F M
Sbjct: 77 YTTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLFLLMP 136
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
++GC + T ++ L A + EA+ V+ M D C D+ YS ++ L A R
Sbjct: 137 QRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAG 196
Query: 333 -----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+YN +I C + A+ + + ++ C P+ T+ + +
Sbjct: 197 EAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLI 256
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
C +++ M+ L M+ G+ P T+ L +
Sbjct: 257 CGFCKSGKVERAMV---LYSRMIEAGLAPNVVTYTTLIQ 292
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 123/299 (41%), Gaps = 42/299 (14%)
Query: 108 VVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLA 167
V EA+ F W G Y+ MV L + + G L+ D + G+V
Sbjct: 160 VREAMAVFAGMWPD---GCAPDSHVYSIMVHGLCGAGRAGEAVALLT--DAMGKGFVPNV 214
Query: 168 AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKT 225
A+ + L+D + A +F ++ K C+ + + + LI G+CK+
Sbjct: 215 AV-----------YNALIDGYCSTGDLELAIDIFKGMQSKGCLP-NVRTYTQLICGFCKS 262
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
K + A M + G +P+ V+YT I+ C E L M+ G P+ TC
Sbjct: 263 GKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTC 322
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--LIYNTMISSA 343
+++ AL K +I EA F SL+ K ++ +IY +MI +
Sbjct: 323 LVLIDALCKHGRIEEA---------------QQFLGSLV---QKGIKVNQVIYTSMIDAL 364
Query: 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
C + A L QKI + PD ++ + C + ++ + + +LN +M+ G+
Sbjct: 365 CKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLN---DMIESGV 420
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 92/240 (38%), Gaps = 20/240 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L+ L V A VF + D + S ++ +++HG C ++ A + +
Sbjct: 148 AALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMG 207
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
GF P+ Y I+ YC D K MQ KGC P+V T T ++ K+ ++
Sbjct: 208 KGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVER 267
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A+ +Y +M A + Y T+I C +A +L +E
Sbjct: 268 AMVLYSRMIEA----------------GLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSME 311
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
P+ T + C R+++ L ++ KGI + + + + L K
Sbjct: 312 ACGLAPNEWTCLVLIDALCKHGRIEEAQQFLG---SLVQKGIKVNQVIYTSMIDALCKSG 368
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 91/214 (42%), Gaps = 14/214 (6%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F + Q G Y +M++AL KS KF L+++I ++ G+V
Sbjct: 341 FLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKI--ITEGFVP----------- 387
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D S L+D L + N + A + + + ++ F +LI + +SD +
Sbjct: 388 DAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSPKMIS 447
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M G PD V+YT FI YC++ + + +M + G +P++ T ++
Sbjct: 448 DRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANL 507
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
+ +A + M + C + Y+ L+ +L K
Sbjct: 508 GLVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLK 541
>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
protein [Medicago truncatula]
gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
protein [Medicago truncatula]
Length = 970
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 132/327 (40%), Gaps = 48/327 (14%)
Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNG-----YVSLAAMSTVMRRLDTRAMSV 183
T TYN M+E K+ +EL++ D L NG Y +S + A
Sbjct: 532 TEVTYNVMIEGYCKAHNMDKAFELLE--DMLHNGLVPDTYTYRPLISGLCSTGRVSAAKD 589
Query: 184 LMDTLVKRN---------SVAHAYKVFLKFKDCISLSSQIFD-----------VLIHGWC 223
+D L K+N ++ H Y + + +S S ++ VLI G
Sbjct: 590 FIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAM 649
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
K + +K+M+ G PD V YT I+ Y +E F+K L M + C P+V+
Sbjct: 650 KQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVV 709
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------A 330
T T M+ L K +I A ++EKM + + ++ Y + L+K
Sbjct: 710 TYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEM 769
Query: 331 VRFLI-----YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385
++ L+ YN +I C A K+ ++ E+ PDC T++ + C R
Sbjct: 770 LKGLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHC---RSG 826
Query: 386 DGMLVLNLMREMLSKGIVPQESTHKML 412
D + L ML KG+ P +L
Sbjct: 827 DVGAAVELWDTMLRKGVEPDSVAFNLL 853
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 111/263 (42%), Gaps = 34/263 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G++ YNA++ AL K + ++D+ Y ++ +M+ L+ S+L
Sbjct: 353 GFLPNLFVYNALINALCKGE----------DLDKAELLYKNMHSMNL---PLNDVTYSIL 399
Query: 185 MDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D+ KR + A F + +D I + ++ LI+G CK A+ +M G
Sbjct: 400 IDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGL 459
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
P ++T I YC++ K +EM EK PSV T T +++ L ++ EA K
Sbjct: 460 EPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASK 519
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRF--LIYNTMISSACVRSEEGNALKLRQKIEE 361
++++M + + ++ + YN MI C A +L + +
Sbjct: 520 LFDEM------------------VERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLH 561
Query: 362 DSCKPDCETHARSLKMCCHKKRM 384
+ PD T+ + C R+
Sbjct: 562 NGLVPDTYTYRPLISGLCSTGRV 584
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 22/261 (8%)
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKS 228
+ V +L A S+L L++ + ++ FL+ K C S+ FD L+H + + +
Sbjct: 105 ALVQNKLFWPANSLLHTLLLRGSDPKFVFEKFLESHKQCKFSSTLGFDFLVHSYLQNTRV 164
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
A ++ M + P+ + + + R + F V E G KP TC+ V
Sbjct: 165 FDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRKFILVWEVFDESVNAGVKPDPYTCSAV 224
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
+ +L + K A + M+S+ F LS + YN +I C
Sbjct: 225 IRSLCELKDFCRAKEKILWMESNR------------FDLS----IVTYNVLIHGLCKGGG 268
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
AL++R+ + E K D T+ + C ++ DG+ LM EM+ G VP E+
Sbjct: 269 VLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGIC---LMNEMVELGFVPTEAA 325
Query: 409 HKMLAEELEKKSLGNAKERID 429
L + L KK GN D
Sbjct: 326 VSGLVDGLRKK--GNIDSAYD 344
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 16/204 (7%)
Query: 130 PE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT 187
PE T +A++ L + +KF L+WE+ DE N V + D S ++ +
Sbjct: 181 PEVRTLSAILNGLLRIRKFILVWEV---FDESVNAGV----------KPDPYTCSAVIRS 227
Query: 188 LVKRNSVAHAY-KVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
L + A K+ + LS ++VLIHG CK A + K + + G D
Sbjct: 228 LCELKDFCRAKEKILWMESNRFDLSIVTYNVLIHGLCKGGGVLEALEVRKSLREKGLKED 287
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+Y + +CR + F + EM E G P+ + ++ L K I A +
Sbjct: 288 VVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVV 347
Query: 307 KMKSDDCLTDTSFYSSLIFILSKA 330
K+ L + Y++LI L K
Sbjct: 348 KLGRFGFLPNLFVYNALINALCKG 371
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+D+L K ++ A + + + ++ +++LI G+CK + A K + EM ++G
Sbjct: 749 FLDSLTKEGNMKEATDLHHEMLKGLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGI 808
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH------ALEKAKQ 297
PD ++Y+ I +CR D M KG +P + ++++ AL+KA +
Sbjct: 809 FPDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFE 868
Query: 298 I 298
+
Sbjct: 869 L 869
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 99/255 (38%), Gaps = 21/255 (8%)
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ L+ K V A+K++ + + I+ S F LI+G C T + A K EM
Sbjct: 466 FTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMV 525
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+ P V+Y IE YC+ + K L++M G P T ++ L ++
Sbjct: 526 ERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVS 585
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
A + + + + YS+L + C + AL ++
Sbjct: 586 AAKDFIDDLHKKNLKLNEMCYSAL----------------LHGYCGQGRLTEALSASCEM 629
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
+ D HA + ++ MK + L+++M +G+ P + + + K+
Sbjct: 630 IQRGINMDLVCHAVLIDGAMKQQDMKR---LFGLLKKMYDQGLRPDSVIYTSMIDAYSKE 686
Query: 420 -SLGNAKERIDELLT 433
S + E +D ++T
Sbjct: 687 GSFKKSGECLDLMVT 701
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 20/147 (13%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK------FKDCISLSSQIFDVLIHGWCKTRKSDY 230
+T ++L+ K + A KV + F DCI+ S+ I++ C++
Sbjct: 776 NTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYE-----HCRSGDVGA 830
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI------- 283
A + M + G PD V++ I C K +M +G KP I
Sbjct: 831 AVELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQILQLQKRD 890
Query: 284 --TCTIVMHALEKAKQIYEALKVYEKM 308
C +MH ++ AL++Y M
Sbjct: 891 LGVCNFLMHGGCVTGEVDTALRLYHSM 917
>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
Length = 624
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 24/220 (10%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ L+ G+CK+ + + K EM + G PD V YT I+ C+ +K + M
Sbjct: 187 VYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMM 246
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--------- 324
+G +P+V+T ++++ + K + EA+ V +KM D Y++LI
Sbjct: 247 VRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEM 306
Query: 325 ----FILSKAVR--------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
++L + VR + +N++I C A ++R +EE C + T+
Sbjct: 307 DEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYN 366
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ +++ M LM EM S G+ P T+ +L
Sbjct: 367 LLIGGLLRVHKVRKAM---ELMDEMTSLGLEPDSFTYSIL 403
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 17/170 (10%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ + ++ + A +F + + L + +IHG CK A++ +K + G
Sbjct: 438 LLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGL 497
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
+PD V+Y+ I + + D + LK+M G P V ++ +I + L+
Sbjct: 498 TPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLE 557
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
+ +M + + D+ S+L S++ V S EG AL
Sbjct: 558 LIREMITKNIALDSKIISTL-----------------STSLVASNEGKAL 590
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 95/220 (43%), Gaps = 21/220 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++LI G + K A + M EM G PD +Y+ I+ +C+ + + L M+
Sbjct: 365 YNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMR 424
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
++G +P + ++ A+ + + A ++ +M D +F + +
Sbjct: 425 DRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM-------DNNF----------PLDVV 467
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
Y+TMI AC + A +L + I ++ PD T++ + M M+ VL
Sbjct: 468 AYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVL--- 524
Query: 395 REMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLT 433
++M + G +P + L + K + E I E++T
Sbjct: 525 KQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMIT 564
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 78/199 (39%), Gaps = 19/199 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ VL+ C R +D A ++ M G D V+Y I C + K + EM
Sbjct: 118 YTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC 177
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA---- 330
E G +P+V+ + ++ K+ + + KV+ +M D Y+ LI L K
Sbjct: 178 ESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAK 237
Query: 331 ---------VR------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
VR + YN +I+ C A+ + +K+ E PD T+ +
Sbjct: 238 KAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLI 297
Query: 376 KMCCHKKRMKDGMLVLNLM 394
K M + M +L M
Sbjct: 298 KGLSDVLEMDEAMWLLEEM 316
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 24/184 (13%)
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQ---EKGCKPSVITCTIVMHALEKAKQIYEAL 302
D VSY + CR + L+ M C+P+ ++ T++M AL + +A+
Sbjct: 76 DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362
+ M+S D + Y T+I C +E A++L ++ E
Sbjct: 136 GLLRSMRSAGVRADV----------------VTYGTLIRGLCDAAEVDKAVELMGEMCES 179
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLG 422
+P+ ++ L+ C R +D V + EM KGI P + L + L K +G
Sbjct: 180 GIEPNVVVYSSLLQGYCKSGRWED---VGKVFVEMSEKGIEPDVVMYTGLIDSLCK--VG 234
Query: 423 NAKE 426
AK+
Sbjct: 235 KAKK 238
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/224 (19%), Positives = 90/224 (40%), Gaps = 25/224 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMF---QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
++ ++ C+ D A ++ M P+ VSYT + C ++ + L+
Sbjct: 80 YNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLR 139
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
M+ G + V+T ++ L A ++ +A+++ +M + YSSL+ K+
Sbjct: 140 SMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSG 199
Query: 332 RF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
R+ ++Y +I S C + A + + +P+ T+
Sbjct: 200 RWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYN 259
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ C + +K+ + VL M E KG+ P T+ L + L
Sbjct: 260 VLINCMCKEGSVKEAIGVLKKMSE---KGVAPDVVTYNTLIKGL 300
>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 137/324 (42%), Gaps = 43/324 (13%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
Q G TYN ++ L K K G E D+L N A D+ ++
Sbjct: 438 QQGCAMDVVTYNTILHGLCKRKMLG-------EADKLFNEMTERALFP------DSYTLT 484
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+L+D K ++ +A ++F K K+ I L ++ L+ G+ K D A++ +M
Sbjct: 485 ILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSK 544
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
P +SY+ + C + + EM K KP+V+ C ++ ++ +
Sbjct: 545 EILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDG 604
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE-GNALKLRQKIE 360
EKM S+ + D Y++LI+ VR E A L +K+E
Sbjct: 605 ESFLEKMISEGFVPDCISYNTLIY-----------------GFVREENMSKAFGLVKKME 647
Query: 361 EDSCK--PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK-MLAEELE 417
E+ PD T+ L C + +MK+ +VL R+M+ +G+ P ST+ M+ +
Sbjct: 648 EEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVL---RKMIERGVNPDRSTYTCMINGFVS 704
Query: 418 KKSLGNAKERIDELLTHATEQRTF 441
+ +L A DE+L QR F
Sbjct: 705 QDNLTEAFRIHDEML-----QRGF 723
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/371 (20%), Positives = 150/371 (40%), Gaps = 48/371 (12%)
Query: 92 DKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWE 151
D V ++L + Y K+ EA + F +K G+ + + NA++ +L + L W
Sbjct: 165 DSVFDLLIRTYVQARKLREAHEAFTLLRSK---GFTVSIDACNALIGSLVRIGWVELAWG 221
Query: 152 LVKEIDELSNG--YVSLAAMSTV------MRRLDTRAMSV----LMDTLVKRNSVAHAYK 199
+ +EI G +L M M ++ T V + +V N++ AY
Sbjct: 222 VYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYS 281
Query: 200 VFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
++ L + + ++ +I+G CK K + A++ EM + G SPD
Sbjct: 282 SKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDST 341
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+Y + C++ D + + +M+ + P ++ + +M ++ + +AL + +
Sbjct: 342 TYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSV 401
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
K + D +IY +I C + A+ LR ++ + C D
Sbjct: 402 KEAGLIPDN----------------VIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDV 445
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
T+ L C +K + + + N EM + + P T +L + K LGN + +
Sbjct: 446 VTYNTILHGLCKRKMLGEADKLFN---EMTERALFPDSYTLTILIDGHCK--LGNLQNAM 500
Query: 429 DELLTHATEQR 439
EL E+R
Sbjct: 501 -ELFQKMKEKR 510
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 109/279 (39%), Gaps = 28/279 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ-IFDVLIHGWCKTRKSDYAQKAM 235
D S +M + ++ A F K+ + I+ +LI G+C+ A
Sbjct: 374 DLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLR 433
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM Q G + D V+Y + C+ K + D EM E+ P T TI++ K
Sbjct: 434 NEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKL 493
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIY 336
+ A+++++KMK D Y++L+ K + Y
Sbjct: 494 GNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISY 553
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
+ ++++ C + A ++ ++ + KP +K C DG + + +
Sbjct: 554 SILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGE---SFLEK 610
Query: 397 MLSKGIVPQESTHKMLA-----EELEKKSLGNAKERIDE 430
M+S+G VP ++ L EE K+ G K+ +E
Sbjct: 611 MISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEE 649
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 86/236 (36%), Gaps = 55/236 (23%)
Query: 204 FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF-------------------- 243
F +C S + +FD+LI + + RK A +A + GF
Sbjct: 158 FSNCGS-NDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWV 216
Query: 244 ----------SPDGVSYTCF-----IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
S GV + + C++ KV L ++QEKG P ++T +
Sbjct: 217 ELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTL 276
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
+ A + EA ++ M +S ++ YNT+I+ C +
Sbjct: 277 ISAYSSKGLMEEAFELMNAMPGKG-------FSPGVY---------TYNTVINGLCKHGK 320
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
A ++ ++ PD T+ L C K + + V + MR S+ +VP
Sbjct: 321 YERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMR---SRDVVP 373
>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
Length = 586
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 122/291 (41%), Gaps = 33/291 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN+++ AL + W K + L N V+ M V+ S ++D L K
Sbjct: 245 TYNSLIHALCNLCE----W---KHVTALLNEMVNSKIMPNVV------IFSTVVDALCKE 291
Query: 192 NSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A+ V + K + + ++ L+ G C + D A K M GF+PD VSY
Sbjct: 292 GKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSY 351
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ I YC+ + K Y +EM K P+ +T + +MH L ++ +A+ ++ +M +
Sbjct: 352 STLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVT 411
Query: 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ D F+ Y ++ C A+ L + IE + PD +
Sbjct: 412 RGQIPD----------------FVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQI 455
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ + C ++ +L + SKG+ P T+ ++ L ++ L
Sbjct: 456 YTIVIDGMCRAGELEAAR---DLFSNLSSKGLHPNVWTYTIMINGLCQQGL 503
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 125/304 (41%), Gaps = 34/304 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T N ++ + ++ G + ++ +I +L + ++A +T++R L K
Sbjct: 105 TLNILINSFCHLQRLGFAFSVLAKILKLGH-QPNIATFNTLIRGLCVEG---------KI 154
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
V H + + + + + LI+G CK + A + ++ M Q PD V YT
Sbjct: 155 GEVLHLFDKMIG--EGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYT 212
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
I+ C+++ + EM +G PS+ T ++HAL + + +M +
Sbjct: 213 SIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNS 272
Query: 312 DCLTDTSFYSSLIFILSK---------AVRFLI----------YNTMISSACVRSEEGNA 352
+ + +S+++ L K V +I YN ++ C+RSE A
Sbjct: 273 KIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEA 332
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+K+ + PD +++ + C +R++ M L EM K ++P T+ L
Sbjct: 333 VKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMY---LFEEMCRKELIPNTVTYSTL 389
Query: 413 AEEL 416
L
Sbjct: 390 MHGL 393
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 75/180 (41%), Gaps = 19/180 (10%)
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
+M G P+ + I +C + L ++ + G +P++ T ++ L
Sbjct: 93 QMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEG 152
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
+I E L +++KM + F +++ Y T+I+ C A++L
Sbjct: 153 KIGEVLHLFDKMIGE------GFQPNVV----------TYGTLINGLCKVGSTSAAIRLL 196
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ +E+ +C+PD + + C +++ NL EM+ +GI P T+ L L
Sbjct: 197 RSMEQGNCQPDVVVYTSIIDSLCKDRQVTQA---FNLFSEMIHQGISPSIFTYNSLIHAL 253
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 159 LSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL------SS 212
L NGY + + M + L+ V +++ H + +D I+L
Sbjct: 354 LINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRG 413
Query: 213 QIFD-----VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
QI D +L+ CK R+ D A +K + PD YT I+ CR +
Sbjct: 414 QIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAAR 473
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
+ KG P+V T TI+++ L + + EA K++ +MK
Sbjct: 474 DLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMK 515
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 52/116 (44%)
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
QI+ ++I G C+ + + A+ + G P+ +YT I C++ + E
Sbjct: 454 QIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGE 513
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS 328
M+ KG P+ T ++ + + +++ ++M + D S + L+ +LS
Sbjct: 514 MKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLS 569
>gi|156070758|gb|ABU45173.1| unknown [Solanum melongena]
Length = 427
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 27/261 (10%)
Query: 184 LMDTLVKRNSVA----HAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEM 238
+ ++++ VA HA K++ + D + S I F+VL+ ++ D + E+
Sbjct: 102 FLSSIIRSYGVARMFDHALKIYHQMDDLGTPRSAISFNVLLSACMHSKLYDRVAQLFDEI 161
Query: 239 -FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
++GF PD VSY I YC KEM+EKG + + + T ++H+ K +
Sbjct: 162 PVKYGFLPDKVSYGVLIRSYCEMGLPEMAMERFKEMEEKGVEITAVAFTTILHSFYKKGK 221
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILS----KAVRFLI--------------YNTM 339
EA +V+ +M S C D Y+ I + + V+ LI YN +
Sbjct: 222 SDEAERVWNEMVSRGCGPDVGAYNVKIMNIQGSKPEGVKALIEEMSNAGLKPDTISYNYL 281
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
++ C A K+ + ++ + C P+ T + C K R + G V RE +S
Sbjct: 282 MTCYCKNQLMDEAQKVYEDLKTNGCNPNAATFRTLIFYLCKKGRFETGYKVF---RESVS 338
Query: 400 KGIVPQESTHKMLAEELEKKS 420
+P T K L E L KKS
Sbjct: 339 VHKIPDFITLKYLVEGLVKKS 359
>gi|357501695|ref|XP_003621136.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496151|gb|AES77354.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 821
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 79/374 (21%), Positives = 149/374 (39%), Gaps = 52/374 (13%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
+ IL + + S ++AL+ F FT T T + + L + + F W L+
Sbjct: 74 IQNILIRLFASHSNGLKALEFFNFTIKNTHTN--PCASSLEITLHILTRMRYFDKAWSLL 131
Query: 154 KEIDELSNGYVSLAAMSTVM--------------------------RRLDTRAMSVLMDT 187
+I G ++L AM+ ++ R + +VL+
Sbjct: 132 IQIANTYPGLLTLKAMNIMLAKIAKYKSFEETLDGFRRMEEEVFVGREFGSDEFNVLLKV 191
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+ + A VF++F D ++ ++L+ G+ +T + EM + GF PD
Sbjct: 192 FATQRQMKEARSVFVRFVDRFKADTKSMNILLLGFKETGDVTSVELFYHEMVKRGFKPDS 251
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
VS+ I+ YC++ F L+EM+ + SV T T ++H + +A +++ +
Sbjct: 252 VSFGIRIDAYCKKGRFGDALRLLEEMESRKFVVSVETITTLIHGAGLVQNPGKAWQLFNE 311
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFL----IYNTMISSACV----------------RS 347
+ + + D+ Y++LI L + + + + MI + R
Sbjct: 312 IPLRNLVVDSGVYNALITTLVRNRDVVSALSLMDGMIEKQILPDGVTYHTIFLGLMKSRG 371
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
EG + +L QK+ + P T +K CH R+ L L+L ++ KG P
Sbjct: 372 IEGVS-ELYQKMTKRKFVPKTRTVVVLMKYFCHNSRLD---LSLSLWNYLVEKGHCPHAH 427
Query: 408 THKMLAEELEKKSL 421
+L L + L
Sbjct: 428 ALDLLVTGLCSRGL 441
>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 125/296 (42%), Gaps = 44/296 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +V+AL K K VKE + LA M + D S LMD
Sbjct: 271 TYNILVDALCKEGK-------VKEAKSV------LAVMLKACVKPDVITYSTLMDGYFLV 317
Query: 192 NSVAHAYKVFLKFKDCISLSS-----QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
V A VF + +SL + +LI+G+CK + D A KEM Q P
Sbjct: 318 YEVKKAQHVF----NAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPG 373
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+Y+ I+ C+ V + EM+++G VIT + ++ L K + A+ ++
Sbjct: 374 IVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFN 433
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRS 347
KMK + + ++ L+ L K R YN MI+ C +
Sbjct: 434 KMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQG 493
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
AL + K+E++ C P+ T ++ + KK D L+R+M+++G++
Sbjct: 494 LLEEALTMLSKMEDNGCIPNAFTF-ETIIIALFKKDENDK--AEKLLRQMIARGLL 546
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 126/295 (42%), Gaps = 44/295 (14%)
Query: 131 ETYNAMVEALGK----SKKFGLMWEL-VKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
E Y+ +++AL K S+ +GL E+ VK I Y +L + +L A+ +L
Sbjct: 200 EMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLK-EAIGLLN 258
Query: 186 DTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+ ++K I+ + +++L+ CK K A+ + M + P
Sbjct: 259 EMVLK----------------TINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKP 302
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D ++Y+ ++ Y + +K + M G P V T TI+++ K K + EAL ++
Sbjct: 303 DVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLF 362
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVR 346
++M + + YSSLI L K+ R + Y+++I C
Sbjct: 363 KEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKN 422
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
A+ L K+++ +P+ T L C R+KD V +++L+KG
Sbjct: 423 GHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVF---QDLLTKG 474
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 101/247 (40%), Gaps = 20/247 (8%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKSDYAQK 233
+L+ + + L++ + K A K+ K ++ + +++ +I CK + A
Sbjct: 161 QLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYG 220
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
EM G S D V+Y+ I +C E ++ L EM K P+V T I++ AL
Sbjct: 221 LFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALC 280
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
K ++ EA V M D YS+L+ FL+Y + NA+
Sbjct: 281 KEGKVKEAKSVLAVMLKACVKPDVITYSTLM-----DGYFLVYEVKKAQHVF-----NAM 330
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
L PD T+ + C K + + LNL +EM K +VP T+ L
Sbjct: 331 SLM------GVTPDVHTYTILINGFCKNKMVDEA---LNLFKEMHQKNMVPGIVTYSSLI 381
Query: 414 EELEKKS 420
+ L K
Sbjct: 382 DGLCKSG 388
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 99/256 (38%), Gaps = 23/256 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D +++L++ + + V K K + + LI G C + A
Sbjct: 93 DLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFH 152
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++ GF + VSY I C+ D R L+++ + KP+V + ++ AL K
Sbjct: 153 DKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKY 212
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------LSKAVRFL-------------IY 336
+ + EA ++ +M D YS+LI+ L +A+ L Y
Sbjct: 213 QLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTY 272
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N ++ + C + A + + + KPD T++ + +K V N M
Sbjct: 273 NILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSL 332
Query: 397 MLSKGIVPQESTHKML 412
M G+ P T+ +L
Sbjct: 333 M---GVTPDVHTYTIL 345
>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 125/296 (42%), Gaps = 44/296 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +V+AL K K VKE + LA M + D S LMD
Sbjct: 271 TYNILVDALCKEGK-------VKEAKSV------LAVMLKACVKPDVITYSTLMDGYFLV 317
Query: 192 NSVAHAYKVFLKFKDCISLSS-----QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
V A VF + +SL + +LI+G+CK + D A KEM Q P
Sbjct: 318 YEVKKAQHVF----NAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPG 373
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+Y+ I+ C+ V + EM+++G VIT + ++ L K + A+ ++
Sbjct: 374 IVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFN 433
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRS 347
KMK + + ++ L+ L K R YN MI+ C +
Sbjct: 434 KMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQG 493
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403
AL + K+E++ C P+ T ++ + KK D L+R+M+++G++
Sbjct: 494 LLEEALTMLSKMEDNGCIPNAFTF-ETIIIALFKKDENDK--AEKLLRQMIARGLL 546
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 106/244 (43%), Gaps = 33/244 (13%)
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMK 236
+V N++ + + + K K+ I L +++ +++L+ CK K A+ +
Sbjct: 234 VVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLA 293
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M + PD ++Y+ ++ Y + +K + M G P V T TI+++ K K
Sbjct: 294 VMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNK 353
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYN 337
+ EAL ++++M + + YSSLI L K+ R + Y+
Sbjct: 354 MVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYS 413
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
++I C A+ L K+++ +P+ T L C R+KD V +++
Sbjct: 414 SLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVF---QDL 470
Query: 398 LSKG 401
L+KG
Sbjct: 471 LTKG 474
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 88/219 (40%), Gaps = 20/219 (9%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+++ +I CK + A EM G S D V+Y I +C ++ L EM
Sbjct: 201 MYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEM 260
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
K P+V T I++ AL K ++ EA V M D YS+L+ F
Sbjct: 261 VLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLM-----DGYF 315
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
L+Y + NA+ L PD T+ + C K + + LNL
Sbjct: 316 LVYEVKKAQHVF-----NAMSLM------GVTPDVHTYTILINGFCKNKMVDEA---LNL 361
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDEL 431
+EM K +VP T+ L + L K + + IDE+
Sbjct: 362 FKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEM 400
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 91/233 (39%), Gaps = 17/233 (7%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D +++L++ + + V K K + + LI G C + A
Sbjct: 93 DLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFH 152
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++ GF + VSY I C+ D R L+++ + KP V+ ++ A+ K
Sbjct: 153 DKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKY 212
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ + EA ++ +M D + YNT+I C+ + A+ L
Sbjct: 213 QLVSEAYGLFSEMAVKGISADV----------------VTYNTLIYGFCIVGKLKEAIGL 256
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
++ + P+ T+ + C + ++K+ VL +M + K V ST
Sbjct: 257 LNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYST 309
>gi|357474495|ref|XP_003607532.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355508587|gb|AES89729.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 468
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 92/193 (47%), Gaps = 2/193 (1%)
Query: 184 LMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L++ RN V A +F FK + ++ ++++I+ + + + M G
Sbjct: 261 LINGYSVRNQVEKAQDLFDNMFKRGVPYDTRCYNMMINNFYENKLFAKVIDIFNLMCSKG 320
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
F P+ VS I +C+ MQ +G +P ++T + AL + ++ E +
Sbjct: 321 FYPEVVSCNYLINSFCKSGYLSSAWSMFHHMQNRGLQPDIVTYNYLCCALLQMNKVDEVM 380
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362
K+ M+ D +F +S+IF F++YN+MI+ C+R +ALKL K++E+
Sbjct: 381 KLLPTMEEHKINAD-NFTNSIIFYKCVTFNFVVYNSMINGFCLRKLINDALKLFPKMKEN 439
Query: 363 SCKPDCETHARSL 375
C PD T+ ++
Sbjct: 440 GCNPDAVTYKTTI 452
>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 110/266 (41%), Gaps = 34/266 (12%)
Query: 203 KFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
KF ISL Q+ + +L++ +C+ + A + +M + G+ PD V+ +
Sbjct: 96 KFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLS 155
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ YC K + + +M E G KP +T ++H L + EA+ + ++M +
Sbjct: 156 SLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVAR 215
Query: 312 DCLTDTSFYSSLIFILSK-------------------AVRFLIYNTMISSACVRSEEGNA 352
C D Y +++ L K +IYNT+I C +A
Sbjct: 216 GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDA 275
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
L K+E KPD T+ + C+ R D L+ +M+ + I P T L
Sbjct: 276 FDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDAS---RLLSDMIERKINPNVVTFNSL 332
Query: 413 AEELEKKS-LGNAKERIDELLTHATE 437
+ K+ L A++ DE++ + +
Sbjct: 333 IDAFAKEGKLIEAEKLFDEMIQRSID 358
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 136/315 (43%), Gaps = 46/315 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV--LMDTLV 189
T+N++++A K K + E K DE+ + R +D ++ L++
Sbjct: 328 TFNSLIDAFAKEGK---LIEAEKLFDEM------------IQRSIDPNIVTYNSLINGFC 372
Query: 190 KRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+ + A ++F + KDC+ ++ LI G+CK ++ + + +EM Q G +
Sbjct: 373 MHDRLDEAQQIFTLMVSKDCLP-DVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 431
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
V+Y I+ + D K+M G P +IT +I++ L K ++ +AL V+E
Sbjct: 432 VTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEY 491
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSE 348
++ + Y+ +I + KA + +IY TMIS C +
Sbjct: 492 LQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGL 551
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG--MLVLNLMREMLSKGIVPQE 406
+ A L ++++ED PD + + + R++DG L++EM S G V
Sbjct: 552 KEEADALFREMKEDGTLPDSGCYNTLI-----RARLRDGDKAASAELIKEMRSCGFVGDA 606
Query: 407 STHKMLAEELEKKSL 421
ST M+ L L
Sbjct: 607 STISMVINMLHDGRL 621
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 104/243 (42%), Gaps = 24/243 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D +++ L KR + A + K K I + I++ +I G CK + D A
Sbjct: 220 DLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLF 279
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+M G PD +Y I C + L +M E+ P+V+T ++ A K
Sbjct: 280 NKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKE 339
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV--RFLIYNTMISSACVRSEEGNAL 353
++ EA K++++M + +++ + YN++I+ C+ A
Sbjct: 340 GKLIEAEKLFDEM------------------IQRSIDPNIVTYNSLINGFCMHDRLDEAQ 381
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
++ + C PD T+ +K C KR+++GM L REM +G+V T+ L
Sbjct: 382 QIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGM---ELFREMSQRGLVGNTVTYNTLI 438
Query: 414 EEL 416
+ L
Sbjct: 439 QGL 441
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 25/246 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ LI + K K A+K EM Q P+ V+Y I +C + M
Sbjct: 329 FNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMV 388
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV--- 331
K C P V+T ++ KAK++ E ++++ +M + +T Y++LI L +A
Sbjct: 389 SKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCD 448
Query: 332 ----------------RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ Y+ ++ C + AL + + +++ +P+ T+ +
Sbjct: 449 MAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMI 508
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA 435
+ C +++DG +L + KG+ P + + +K L KE D L
Sbjct: 509 EGMCKAGKVEDGW---DLFCSLSLKGVKPNVIIYTTMISGFCRKGL---KEEADALFREM 562
Query: 436 TEQRTF 441
E T
Sbjct: 563 KEDGTL 568
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 113/258 (43%), Gaps = 18/258 (6%)
Query: 71 KLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTP 130
+L+E +I + +S+D DV + ++ K + +V E ++ F +Q G +
Sbjct: 376 RLDEAQQIFTLMVSKDCLPDVVTYNTLI-KGFCKAKRVEEGMELF---REMSQRGLVGNT 431
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
TYN +++ L ++ + ++ K++ +S+G D S+L+D L K
Sbjct: 432 VTYNTLIQGLFQAGDCDMAQKIFKKM--VSDGVPP-----------DIITYSILLDGLCK 478
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A VF K + + ++++I G CK K + + G P+ +
Sbjct: 479 YGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVII 538
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
YT I +CR+ + D +EM+E G P ++ A + + ++ ++M+
Sbjct: 539 YTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMR 598
Query: 310 SDDCLTDTSFYSSLIFIL 327
S + D S S +I +L
Sbjct: 599 SCGFVGDASTISMVINML 616
>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 23/244 (9%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ +S +F VLI G CK A++ EM G+ P+ V+ T + YC + +
Sbjct: 251 LDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMAR 310
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ E G K V T + +H K ++ +A++V+++M + + + Y+SLI L
Sbjct: 311 ELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCL 370
Query: 328 SKAVR----FLIYNTM---------------ISSACVRSEEGNALKLRQKIEEDSCKPDC 368
KA + I TM + C A+ L ++ E PD
Sbjct: 371 CKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDV 430
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKER 427
++ + CC +RM + M NL+R+M K +VP T+ L + L + + NA
Sbjct: 431 WSYTILIHGCCTSRRMGEAM---NLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRL 487
Query: 428 IDEL 431
++E+
Sbjct: 488 LNEM 491
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 19/205 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++V IHG+CK + A + EM + G P+ V+Y I+ C+ + +K M
Sbjct: 328 YNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMH 387
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
G P ++TC I++ L K+K++ +A+ ++ ++ D Y+ L
Sbjct: 388 RSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTIL----------- 436
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
I C G A+ L + + + P T++ + C R+ + +LN
Sbjct: 437 -----IHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLN-- 489
Query: 395 REMLSKGIVPQESTHKMLAEELEKK 419
EM KG +P T+ +L + L KK
Sbjct: 490 -EMHVKGPLPDTITYSILLDALWKK 513
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 104/249 (41%), Gaps = 32/249 (12%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G + TYN++++ L K+ + WE+VK + + ++ D +L
Sbjct: 355 GVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHR--------SGLTP-----DIVTCCIL 401
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
+D L K + A +F + + L+ + + +LIHG C +R+ A +++M
Sbjct: 402 LDGLCKSKRLDQAILLFNQLVES-GLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKN 460
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
P V+Y+C I+ CR L EM KG P IT +I++ AL K + + EA+
Sbjct: 461 LVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAV 520
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362
++ +M D + Y MI C A+ L +++
Sbjct: 521 FLFNQMIKRGLEPDV----------------MCYTIMIDGYCKSERIDEAINLFREMHMK 564
Query: 363 SCKPDCETH 371
+ PD T+
Sbjct: 565 NLVPDIVTY 573
>gi|255660960|gb|ACU25649.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 376
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 120/289 (41%), Gaps = 40/289 (13%)
Query: 132 TYNAMVEA---LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL 188
YNAM+ + K K +WE++ S G S+++ + +MR L
Sbjct: 27 VYNAMLNGYFRVAKIKDCFELWEMMG-----SEGNRSVSSFNIMMR------------GL 69
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
V ++ K+ + I + +L+HG+CK D + ++ Q G D
Sbjct: 70 FDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDA 129
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+Y+ I C+E + + L +M + GCKP+V +++ L A + +A++V+ +
Sbjct: 130 FAYSAMINGLCKEANLDRALSVLNDMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFRE 189
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
M + C + + YNT+I+ C G A L +++ + P
Sbjct: 190 MGTMHC----------------SPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPG 233
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
T++ +K C R++ L L ++ SKG P H +L L
Sbjct: 234 VITYSMLMKGLCLDHRVER---ALQLWNQVTSKGFKPDVQMHNILIHGL 279
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 117/295 (39%), Gaps = 45/295 (15%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-----D 177
++G++ TY +V K+ V E+ E G + A S ++ L
Sbjct: 87 ESGFVEDSITYGILVHGFCKNGYIDKSLH-VLEMAEQKGGVLDAFAYSAMINGLCKEANL 145
Query: 178 TRAMSVLMDTL---VKRNSVAHAYKVFL-------KFKDCISLSSQI-----------FD 216
RA+SVL D + K N H Y + KF+D I + ++ ++
Sbjct: 146 DRALSVLNDMIKSGCKPN--VHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYN 203
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
LI+G CK A +KE+ G P ++Y+ ++ C + + ++ K
Sbjct: 204 TLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRVERALQLWNQVTSK 263
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336
G KP V I++H L ++ AL +Y M C A + +
Sbjct: 264 GFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNHWKC----------------APNLVSH 307
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
NT++ + NAL + +I + +PD ++ +LK C R+ D +L L
Sbjct: 308 NTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYNITLKGLCSCNRISDAILFL 362
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 24/230 (10%)
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
C++ D A++ K++ + SPD V Y + Y R + + L EM SV
Sbjct: 1 CESGDIDGAKRVYKKIVESKVSPDAVVYNAMLNGYFRVAKIKDC-FELWEMMGSEGNRSV 59
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF------ILSKAVRFL-- 334
+ I+M L ++ E + ++E MK + D+ Y L+ + K++ L
Sbjct: 60 SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119
Query: 335 -----------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
Y+ MI+ C + AL + + + CKP+ + + +
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRALSVLNDMIKSGCKPNVHVYNTLINGLVGASK 179
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL-GNAKERIDELL 432
+D + V REM + P T+ L L K + G A + ELL
Sbjct: 180 FEDAIRVF---REMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELL 226
>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Cucumis sativus]
Length = 822
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 93/209 (44%), Gaps = 22/209 (10%)
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+ LIHG C K A + +KEM + G D ++Y I +C E +EM +
Sbjct: 492 NALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTK 551
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-- 333
+G +P + T ++ L ++ +A+K++++ K+ +++ Y ++ KA R
Sbjct: 552 RGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIED 611
Query: 334 -----------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
++YN +I + C AL+L + ++ P+C T++ +
Sbjct: 612 VENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIH 671
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
C+ ++D +L+ EM +G VP
Sbjct: 672 GVCNIGLVEDAK---HLIDEMRKEGFVPN 697
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G+CK + D A+ EM P+ +YT I+ YC+ + K + L +M+
Sbjct: 701 YTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMK 760
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
E G P V+T ++ + KA + A KV ++M ++ D Y++L+
Sbjct: 761 ESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLV 810
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 100/250 (40%), Gaps = 40/250 (16%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
+G + TY M+E K+ + +++++ L N +S L++ ++
Sbjct: 587 SGLISNIHTYGIMMEGYCKANR-------IEDVENLFNELLSKKM------ELNSIVYNI 633
Query: 184 LMDTLVKRNSVAHAYKVFLKFK------DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
++ + +VA A ++ K +C + SS LIHG C + A+ + E
Sbjct: 634 IIKAHCQNGNVAAALQLLENMKSKGILPNCATYSS-----LIHGVCNIGLVEDAKHLIDE 688
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M + GF P+ V YT I YC+ + T EM P+ T T+++ K
Sbjct: 689 MRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGN 748
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
+ +A + KMK + D + YN + + C ++ NA K+
Sbjct: 749 MEKANNLLIKMKESGIVPDV----------------VTYNVLTNGFCKANDMDNAFKVCD 792
Query: 358 KIEEDSCKPD 367
++ + D
Sbjct: 793 QMATEGLPVD 802
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 2/147 (1%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + + +++ L K + +A ++F+K K IS + ++ +I+G C+ + D A +
Sbjct: 242 DVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELK 301
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++M G P+ +Y I + F KV++ L EM G P+V+ ++ K
Sbjct: 302 EKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKM 361
Query: 296 KQIYEALKVYEKMKSDDCL-TDTSFYS 321
I ALK+ + M S + T + YS
Sbjct: 362 GNIEGALKIKDVMISKNITPTSVTLYS 388
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 95/241 (39%), Gaps = 23/241 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L+ G C K D A K E G + +Y +E YC+ V+ E+
Sbjct: 561 YNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELL 620
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-----FILSK 329
K + + I I++ A + + AL++ E MKS L + + YSSLI L +
Sbjct: 621 SKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVE 680
Query: 330 AVRFLI--------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ LI Y +I C + A ++ + P+ T+ +
Sbjct: 681 DAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMI 740
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTH 434
C M+ NL+ +M GIVP T+ +L K + + NA + D++ T
Sbjct: 741 DGYCKLGNMEKAN---NLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATE 797
Query: 435 A 435
Sbjct: 798 G 798
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 23/223 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+ L+ +LVK N +VF + F +I+ CK K + A + +M +
Sbjct: 213 NFLLSSLVKANEFEKCCEVFRVMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKL 272
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKE-MQEKGCKPSVITCTIVMHALEKAKQIYE 300
G SP+ V+Y C I C+ + LKE M KG +P++ T +++ L K
Sbjct: 273 GISPNVVTYNCIINGLCQNGRLDNA-FELKEKMTVKGVQPNLKTYGALINGLIK------ 325
Query: 301 ALKVYEKMKSD-DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
L ++K+ D + + F +++ ++N +I C ALK++ +
Sbjct: 326 -LNFFDKVNHVLDEMIGSGFNPNVV----------VFNNLIDGYCKMGNIEGALKIKDVM 374
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
+ P T ++ C +++ N + E+LS G+
Sbjct: 375 ISKNITPTSVTLYSLMQGFCKSDQIEHAE---NALEEILSSGL 414
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 20/146 (13%)
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
+ KG PS+ TC ++ +L KA + + +V+ M C SF
Sbjct: 200 LARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGACPDVFSF------------- 246
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
+I++ C + NA++L K+E+ P+ T+ + C R+ +
Sbjct: 247 ----TNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNA---FE 299
Query: 393 LMREMLSKGIVPQESTHKMLAEELEK 418
L +M KG+ P T+ L L K
Sbjct: 300 LKEKMTVKGVQPNLKTYGALINGLIK 325
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ V+I G+CK + A + +M + G PD V+Y +C+ D +M
Sbjct: 736 YTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMA 795
Query: 275 EKGCKPSVITCTIVMHA 291
+G IT T ++H
Sbjct: 796 TEGLPVDEITYTTLVHG 812
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 56/305 (18%), Positives = 112/305 (36%), Gaps = 36/305 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ L ++ + +EL ++ M+ + + + L++ L+K
Sbjct: 280 TYNCIINGLCQNGRLDNAFELKEK-------------MTVKGVQPNLKTYGALINGLIKL 326
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
N V + + + +F+ LI G+CK + A K M +P V+
Sbjct: 327 NFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTL 386
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
++ +C+ + L+E+ G C V+H L K + + A + + M S
Sbjct: 387 YSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLS 446
Query: 311 DDCLTDTSFYSSLIFILSKAVRFL-------------------IYNTMISSACVRSEEGN 351
+ + L+ L K + L N +I C +
Sbjct: 447 RNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPE 506
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A ++ +++ E D T+ + C++ +++ L EM +GI P T+
Sbjct: 507 ASRIVKEMLERGLPMDRITYNALILGFCNEGKVEG---CFRLREEMTKRGIQPDIYTYNF 563
Query: 412 LAEEL 416
L L
Sbjct: 564 LLRGL 568
>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 113/265 (42%), Gaps = 24/265 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
DT ++L+ L + V A++VF + L + ++ LI+G CK + +
Sbjct: 177 DTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELF 236
Query: 236 KEM-FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
KE+ + SPD V+YT I +C+ ++ +EM G +P+VIT +++ K
Sbjct: 237 KEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGK 296
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
I EA +Y KM DC D ++SL I C + + LK
Sbjct: 297 IGNIAEAEAMYRKMAYFDCSADVVTFTSL----------------IDGYCRAGQVNHGLK 340
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
++ + P T+A + C + R+ + + + ++ + I+P+ + + +
Sbjct: 341 FWNVMKTRNVSPTVYTYAVLINALCKENRLNEAR---DFLGQIKNSSIIPKPFMYNPVID 397
Query: 415 ELEKKSLGNAKERIDELLTHATEQR 439
K GN E + +L E+R
Sbjct: 398 GFCKA--GNVDEG-NVILKEMEEKR 419
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 90/209 (43%), Gaps = 14/209 (6%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
++G T+N +++ GK + I E Y +A D +
Sbjct: 277 RSGIQPNVITFNVLIDGFGK----------IGNIAEAEAMYRKMAYFDC---SADVVTFT 323
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
L+D + V H K + K +S + + VLI+ CK + + A+ + ++
Sbjct: 324 SLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNS 383
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
P Y I+ +C+ + + + LKEM+EK C P +T TI++ +++EA
Sbjct: 384 SIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEA 443
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
+ ++ +M + C D +SLI L KA
Sbjct: 444 INIFNRMLATRCAPDNITVNSLISCLLKA 472
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 91/232 (39%), Gaps = 25/232 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++L+ C+ D M G PD + + DF V L E+Q
Sbjct: 76 YNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEVQ 135
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
K + + ++ L K Q++EA+ ++++ DT ++ LI L +
Sbjct: 136 GKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVD 195
Query: 333 -----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDS-CKPDCETHARS 374
+ YNT+I+ C +E +L ++I+ S C PD T+
Sbjct: 196 RAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSI 255
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
+ C +MK+ NL EM+ GI P T +L + K +GN E
Sbjct: 256 ISGFCKSGKMKEAS---NLFEEMMRSGIQPNVITFNVLIDGFGK--IGNIAE 302
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/255 (18%), Positives = 104/255 (40%), Gaps = 24/255 (9%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ ++S +++ L+ K + A KE PD ++ I CR +
Sbjct: 139 VRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAF 198
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS-DDCLTDTSFYSSLIFI 326
K+M+ GC P V+T +++ L KA ++ +++++++S DC D Y+S+I
Sbjct: 199 EVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISG 258
Query: 327 LSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
K+ + + +N +I A + +K+ C D
Sbjct: 259 FCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSAD 318
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKE 426
T + C ++ G+ N+M+ ++ + P T+ +L L K++ L A++
Sbjct: 319 VVTFTSLIDGYCRAGQVNHGLKFWNVMK---TRNVSPTVYTYAVLINALCKENRLNEARD 375
Query: 427 RIDELLTHATEQRTF 441
+ ++ + + F
Sbjct: 376 FLGQIKNSSIIPKPF 390
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 1/139 (0%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+VL++ L K N + A + K+ I +++ +I G+CK D +KEM +
Sbjct: 358 AVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEE 417
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
PD V++T I +C + + M C P IT ++ L KA E
Sbjct: 418 KRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLLKAGMPNE 477
Query: 301 ALKVYEKMKSDDCLTDTSF 319
A ++ + D L +SF
Sbjct: 478 AYRIRKMALEDRNLGLSSF 496
>gi|219363731|ref|NP_001136745.1| hypothetical protein [Zea mays]
gi|194696880|gb|ACF82524.1| unknown [Zea mays]
gi|414875980|tpg|DAA53111.1| TPA: hypothetical protein ZEAMMB73_920038 [Zea mays]
Length = 421
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 101/206 (49%), Gaps = 19/206 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ L+ G+ + K A A M G SP+ +Y C I + +D+R V L EM+
Sbjct: 216 YNTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVSGLLDEMK 275
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
EKG K V+T +++ AL ++ +A+K+ ++M + + +
Sbjct: 276 EKGVKADVVTYNVLIGALCCKGEVRKAVKLLDEMVE----------------VGLEPKHV 319
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YNT+I+ C + + A ++R ++E+ + + T+ LK C +M + +VLN
Sbjct: 320 AYNTIINGFCEKGDAQGAHEIRLRMEKRKKRANVVTYNVFLKYFCKMGKMDEANVVLN-- 377
Query: 395 REMLSKGIVPQESTHKMLAEELEKKS 420
EML KG+VP T++++ + +K
Sbjct: 378 -EMLEKGLVPNRITYEIINSGMIEKG 402
>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g64320, mitochondrial; Flags: Precursor
gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 730
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 99/261 (37%), Gaps = 57/261 (21%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +L+ G+CK K D A + EM G P+ V + C I +C+E + +EM
Sbjct: 427 YTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMP 486
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL-----SK 329
KGCKP V T ++ L + +I AL + M S+ + +T Y++LI K
Sbjct: 487 RKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIK 546
Query: 330 AVRFLI--------------YNTMISSACVRSEEGNALKLRQKIEED-------SCK--- 365
R L+ YN++I C E A L +K+ D SC
Sbjct: 547 EARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILI 606
Query: 366 -------------------------PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
PD T + C R++DG L + R++ ++
Sbjct: 607 NGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDG---LTMFRKLQAE 663
Query: 401 GIVPQESTHKMLAEELEKKSL 421
GI P T L L K
Sbjct: 664 GIPPDTVTFNTLMSWLCKGGF 684
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 92/198 (46%), Gaps = 10/198 (5%)
Query: 155 EIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSS 212
E+DE+ + L M + +T + L++ ++R + A K+ + F+ L
Sbjct: 506 EVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS-PLDE 564
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
++ LI G C+ + D A+ ++M + G +P +S I CR + KE
Sbjct: 565 ITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKE 624
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M +G P ++T +++ L +A +I + L ++ K++++ DT +++L+ L K
Sbjct: 625 MVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKG-- 682
Query: 333 FLIYNTMISSACVRSEEG 350
+ AC+ +EG
Sbjct: 683 -----GFVYDACLLLDEG 695
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 128/325 (39%), Gaps = 38/325 (11%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAM-STVMRR 175
F+W +Q GY H+ + Y ++ LG + +F + L+ ++ + G V ++ ++MR
Sbjct: 98 FSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKD--EGIVFKESLFISIMRD 155
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D L+ + + Y FK + + ++L+ G C A
Sbjct: 156 YDKAGFPGQTTRLMLE--MRNVYSCEPTFKS----YNVVLEILVSGNCHK----VAANVF 205
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+M P ++ ++ +C + L++M + GC P+ + ++H+L K
Sbjct: 206 YDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKC 265
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIY 336
++ EAL++ E+M C+ D ++ +I L K R + Y
Sbjct: 266 NRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITY 325
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
+++ C A L +I KP+ + R+ D VL+ M
Sbjct: 326 GYLMNGLCKIGRVDAAKDLFYRIP----KPEIVIFNTLIHGFVTHGRLDDAKAVLSDM-- 379
Query: 397 MLSKGIVPQESTHKMLAEELEKKSL 421
+ S GIVP T+ L K+ L
Sbjct: 380 VTSYGIVPDVCTYNSLIYGYWKEGL 404
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 22/226 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI+G+ K A + + +M G P+ SYT ++ +C+ + L EM
Sbjct: 392 YNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMS 451
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF--------- 325
G KP+ + ++ A K +I EA++++ +M C D ++SLI
Sbjct: 452 ADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIK 511
Query: 326 --------ILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++S+ V + YNT+I++ R E A KL ++ D T+ +
Sbjct: 512 HALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLI 571
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
K C + +L +ML G P + +L L + +
Sbjct: 572 KGLCRAGEVDKAR---SLFEKMLRDGHAPSNISCNILINGLCRSGM 614
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 109/250 (43%), Gaps = 49/250 (19%)
Query: 119 WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT 178
+A + G + YN ++ KS K ++L++E M T R+
Sbjct: 606 YAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEE-------------MKTKGRQPTV 652
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
++D L K + + AY +F + K + + L+ I+ LI G+ K + D A M+E
Sbjct: 653 VTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEE 712
Query: 238 MFQHGFSPD-----------------------------------GVSYTCFIEHYCREKD 262
+ Q G +P+ ++Y+ I CR +
Sbjct: 713 LMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRK 772
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
F K +EMQ++G KP+ IT T ++ L KA I EA ++E+ K++ + D++ Y++
Sbjct: 773 FNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNA 832
Query: 323 LIFILSKAVR 332
+I LS + R
Sbjct: 833 IIEGLSYSRR 842
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 114/270 (42%), Gaps = 25/270 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D R ++ MD + K +F + K + + + +LIHG K + +
Sbjct: 546 DLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELF 605
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M + G D +Y FI+ +C+ K L+EM+ KG +P+V+T V+ L K
Sbjct: 606 YAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKI 665
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTMIS---------- 341
++ EA ++E+ KS+ + YSSLI K R +LI ++
Sbjct: 666 DRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTW 725
Query: 342 ----SACVRSEEGN-ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
A V++EE N AL Q ++ P+ T++ + C ++ + +E
Sbjct: 726 NCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFV---FWQE 782
Query: 397 MLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
M +G+ P T+ + L K GN E
Sbjct: 783 MQKQGLKPNTITYTTMIAGLAKA--GNIAE 810
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 128/307 (41%), Gaps = 35/307 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
YN M+ G + KF + L++ + + +V+ A + ++ L K+
Sbjct: 340 AYNTMIMGYGSAGKFDEAYSLLERQK-------ARGCIPSVI------AYNCILTCLGKK 386
Query: 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
+ A + F + K + + ++VLI CK + + A K M + G P+ ++
Sbjct: 387 GRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVN 446
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
I+ C+ K + + M K C P +T ++ L K ++ +A ++YE+M
Sbjct: 447 IMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDS 506
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
D + + Y+SLI K C R E+G+ K+ +++ C PD
Sbjct: 507 DKIPNAVVYTSLIKSFFK--------------CGRKEDGH--KIFKEMIHRGCSPD--LR 548
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431
+ M C K + G L E+ S+G +P ++ +L L K G A+E EL
Sbjct: 549 LLNAYMDCVFKAGETGK-GRALFEEIKSRGFIPDVMSYSILIHGLVKA--GFARETY-EL 604
Query: 432 LTHATEQ 438
EQ
Sbjct: 605 FYAMKEQ 611
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 129/331 (38%), Gaps = 81/331 (24%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMR------RLDTRAMSVL 184
Y ++ AL ++ +M L ++ EL GY VS+ +TV+R RLD A+S+L
Sbjct: 200 AYTTLIGALSSVQESDIMLTLFHQMQEL--GYEVSVHLFTTVIRVFAREGRLDA-ALSLL 256
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
+ +K N C+ +++V I + K K D A K E+ HG
Sbjct: 257 DE--MKSN--------------CLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLL 300
Query: 245 PDGVSYTCFIEHYCREKD-------FRKVD---------------------------YTL 270
PD V+YT I C+ F +++ Y+L
Sbjct: 301 PDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSL 360
Query: 271 KEMQE-KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
E Q+ +GC PSVI ++ L K ++ EAL+ +E+MK D
Sbjct: 361 LERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKD-----------------A 403
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
A YN +I C E A K+R ++E P+ T + C K++ +
Sbjct: 404 APNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACS 463
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ M + P E T L + L K+
Sbjct: 464 IFEGMNHKICS---PDEVTFCSLIDGLGKQG 491
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 123/323 (38%), Gaps = 50/323 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +++ L K+ E+ + AM + +++++D L K
Sbjct: 409 TYNVLIDMLCKA-------------GEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKA 455
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ A +F + K C S F LI G K + D A + ++M P+ V
Sbjct: 456 KKLDEACSIFEGMNHKIC-SPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVV 514
Query: 250 YTCFIEHY---CREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
YT I+ + R++D K+ KEM +GC P + M + KA + + ++E
Sbjct: 515 YTSLIKSFFKCGRKEDGHKI---FKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFE 571
Query: 307 KMKSDDCLTDTSFYSSLIFILSKA-------------------VRFLIYNTMISSACVRS 347
++KS + D YS LI L KA + YNT I C
Sbjct: 572 EIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSG 631
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
+ A +L ++++ +P T+ + R+ + + L E S G+
Sbjct: 632 KVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYM---LFEEAKSNGLELNVV 688
Query: 408 THKMLAEELEKKSLGNAKERIDE 430
+ L + K RIDE
Sbjct: 689 IYSSLIDGFGKVG------RIDE 705
>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 83/368 (22%), Positives = 152/368 (41%), Gaps = 54/368 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI--DELSNGYVSLAAMSTVMR 174
F WA + + H TY A++ L +++ G +W ++++ + G L+ + ++
Sbjct: 112 FKWAGKKRNFEHDSTTYMALIRCLDENRLVGELWRTIQDMVKSPCAIGPSELSEIVKILG 171
Query: 175 RLD--TRAMSVLMDTLVKR--------NSV-------AHAYKVFLKFKDCISLS-----S 212
R+ +A+S+ ++ NSV H KV + + S +
Sbjct: 172 RVKMVNKALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDT 231
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
+ LI + K + D A + EM ++G P YT + Y + + + E
Sbjct: 232 VTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHE 291
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M+ + C P+V T T ++ L K+ ++ +A VY+ M D C D ++LI IL ++ R
Sbjct: 292 MRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDR 351
Query: 333 F-------------------LIYNTMISSACV-RSEEGNALKLRQKIEEDSCKPDCETHA 372
+ YNT+I S ++ A +++++D P T++
Sbjct: 352 LKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYS 411
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAK--ERIDE 430
+ C R++ +L L+ EM KG P + + L SLG AK E +E
Sbjct: 412 ILIDGFCKTNRVEKALL---LLEEMDEKGFPPCPAAYCSLI-----NSLGKAKRYEAANE 463
Query: 431 LLTHATEQ 438
L E
Sbjct: 464 LFQELKEN 471
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 117/266 (43%), Gaps = 44/266 (16%)
Query: 132 TYNAMVEALGKSKK----FGLMWELVKEIDE----LSNGYVSLAAMSTV----------M 173
TY ++ LGKS + +G+ ++K+ + L N +++ S M
Sbjct: 303 TYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEM 362
Query: 174 RRLDTRAMSVLMDTLVKR-------NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR 226
R L+ V +T++K S A ++ +K KD + SS + +LI G+CKT
Sbjct: 363 RLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMK-KDGVVPSSFTYSILIDGFCKTN 421
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
+ + A ++EM + GF P +Y I + K + + +E++E SV
Sbjct: 422 RVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYA 481
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR 346
+++ K + EA+ ++ +MK C+ D Y++LI + VR
Sbjct: 482 VMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALI-----------------TGMVR 524
Query: 347 SEEGN-ALKLRQKIEEDSCKPDCETH 371
++ + A L + +EE+ C PD +H
Sbjct: 525 ADMMDEAFSLFRTMEENGCNPDINSH 550
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/199 (19%), Positives = 85/199 (42%), Gaps = 25/199 (12%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL------ 176
+ G+ P Y +++ +LGK+K++ EL +E+ E + G S+ + +++
Sbjct: 435 EKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKE-NCGSSSVRVYAVMIKHFGKCGRF 493
Query: 177 -----------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVL 218
D A + L+ +V+ + + A+ +F + + + +++
Sbjct: 494 NEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNII 553
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
++G +T A + +M PD VSY + R F + +KEM KG
Sbjct: 554 LNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGF 613
Query: 279 KPSVITCTIVMHALEKAKQ 297
+ +IT + ++ A+ K +
Sbjct: 614 EYDLITYSSILEAVGKVDE 632
>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 19/220 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I+G CKT K A+ + EM + G SPD +Y + CR + + EM
Sbjct: 431 YNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMP 490
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+G P +++ + ++ L K + +ALK + MK+ D +
Sbjct: 491 SQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDN----------------V 534
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
IY +I C ALK+R ++ E C D T+ L C +K + + L
Sbjct: 535 IYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEAD---ELF 591
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTH 434
EM +G+ P T L K N + E++
Sbjct: 592 TEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQ 631
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 126/330 (38%), Gaps = 45/330 (13%)
Query: 132 TYNAMVEALGKSKKF----GLMWELVK------------------EIDELSNGYVSLAAM 169
TYNA++ L K+ K+ G++ E++K D + + M
Sbjct: 430 TYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEM 489
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKS 228
+ D + S L+ L K + A K F K+ ++ + I+ +LI G+C+
Sbjct: 490 PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVM 549
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
A K EM + G D V+Y + C+EK + D EM E+G P T T +
Sbjct: 550 SEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 609
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--------------- 333
++ K + +A+ ++E M + D Y++LI K
Sbjct: 610 INGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRI 669
Query: 334 ----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ Y +I+ C A +L ++ E + T +K C R + +
Sbjct: 670 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYC---RAGNAVK 726
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKK 419
+ ML KGIVP T+ L K+
Sbjct: 727 ADEFLSNMLLKGIVPDGITYNTLINGFIKE 756
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 124/323 (38%), Gaps = 61/323 (18%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMSTVMRRLDTR 179
TYN ++ L K K EL E+ E L NGY M+ +
Sbjct: 570 TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAV------ 623
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
L + +++RN LK D ++ ++ LI G+CK + + + +M
Sbjct: 624 ---TLFEMMIQRN---------LK-PDVVT-----YNTLIDGFCKGSEMEKVNELWNDMI 665
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
P+ +SY I YC + EM EKG + ++ITC ++ +A
Sbjct: 666 SRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAV 725
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
+A + M + D + YNT+I+ A L K+
Sbjct: 726 KADEFLSNMLLKGIVPDG----------------ITYNTLINGFIKEENMDRAFALVNKM 769
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH-KMLAEELEK 418
E PD T+ L + RM++ L+ M +M+ +G+ P ST+ ++ + +
Sbjct: 770 ENSGLLPDVITYNVILNGFSRQGRMQEAELI---MLKMIERGVNPDRSTYTSLINGHVTQ 826
Query: 419 KSLGNAKERIDELLTHATEQRTF 441
+L A DE+L QR F
Sbjct: 827 NNLKEAFRVHDEML-----QRGF 844
>gi|108862162|gb|ABA95747.2| Cytochrome P450 family protein [Oryza sativa Japonica Group]
Length = 1595
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 132/327 (40%), Gaps = 42/327 (12%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
G++ T TY +++ LGK + L E+ + G+ + + +
Sbjct: 1042 NGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRK--RGFSP-----------NVQIYNS 1088
Query: 184 LMDTLVKRNSVAHAYKVFLK--FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
++D L S A V LK F F+ LI G C A+ ++E +
Sbjct: 1089 VIDALCNCRSATQAM-VILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRR 1147
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
+P+ +SYT I +C + L EM +G P V+T ++H L A ++ EA
Sbjct: 1148 ELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEA 1207
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL--------------------IYNTMIS 341
L V EKM D + Y+ LI L K R L +Y T+I
Sbjct: 1208 LIVREKMTERQVFPDVNIYNVLISGLCKK-RMLPAAKNILEEMLEKNVQPDEFVYATLI- 1265
Query: 342 SACVRSEE-GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
+RSE G+A K+ + +E PD + +K C M + +L ++ MR++
Sbjct: 1266 DGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKV--- 1322
Query: 401 GIVPQESTHKMLAEELEKKSLGNAKER 427
G +P E T+ + K+ N R
Sbjct: 1323 GCIPDEFTYTTVISGYAKQGNLNGALR 1349
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 138/330 (41%), Gaps = 38/330 (11%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL 166
+V E LK W G + YN +++ + G L+ E++ +NG+ L
Sbjct: 993 RVEEGLKLIEARWG---AGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEME--TNGF--L 1045
Query: 167 AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKT 225
+ T L++ L K+ + +FL+ K S + QI++ +I C
Sbjct: 1046 PTLVT---------YGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNC 1096
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
R + A +K+MF G PD +++ I C E RK ++ L+E + P+ ++
Sbjct: 1097 RSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSY 1156
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
T ++H ++ A + +M D + +LI L V
Sbjct: 1157 TPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGL----------------VV 1200
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ AL +R+K+ E PD + + C KKRM N++ EML K + P
Sbjct: 1201 AGKVSEALIVREKMTERQVFPDVNIYNVLISGLC-KKRMLPA--AKNILEEMLEKNVQPD 1257
Query: 406 ESTHKMLAEE-LEKKSLGNAKERIDELLTH 434
E + L + + ++LG+A+ +I E + H
Sbjct: 1258 EFVYATLIDGFIRSENLGDAR-KIFEFMEH 1286
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 95/244 (38%), Gaps = 20/244 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D L+ LV V+ A V K + + I++VLI G CK R A+ +
Sbjct: 1187 DVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNIL 1246
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM + PD Y I+ + R ++ + M+ KG P +++C ++ +
Sbjct: 1247 EEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQF 1306
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ EA+ M+ C+ D Y T+IS + AL+
Sbjct: 1307 GMMSEAILCMSNMRKVGCIPDE----------------FTYTTVISGYAKQGNLNGALRW 1350
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ + CKP+ T++ + C + D L M ++ + P T+ +L
Sbjct: 1351 LCDMIKRKCKPNVVTYSSLINGYC---KTGDTDSAEGLFANMQAEALSPNVVTYTILIGS 1407
Query: 416 LEKK 419
L KK
Sbjct: 1408 LFKK 1411
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 84/196 (42%), Gaps = 19/196 (9%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
VL+ G C R+ + K ++ + G P V Y I+ YCR D + L EM+
Sbjct: 983 VLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETN 1042
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336
G P+++T +++ L K + + ++ +M+ S V+ IY
Sbjct: 1043 GFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRG--------------FSPNVQ--IY 1086
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
N++I + C A+ + +++ C PD T + CH+ ++ + +RE
Sbjct: 1087 NSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAE---HFLRE 1143
Query: 397 MLSKGIVPQESTHKML 412
+ + + P + ++ L
Sbjct: 1144 AIRRELNPNQLSYTPL 1159
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 83/194 (42%), Gaps = 4/194 (2%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +I G+ K + A + + +M + P+ V+Y+ I YC+ D + MQ
Sbjct: 1331 YTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQ 1390
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ P+V+T TI++ +L K ++ A +E M + C + L+ L+ +
Sbjct: 1391 AEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCV 1450
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
I + +++ V ++ L + +K+ D P + + C +++ L+
Sbjct: 1451 INSICCNTSEVHGKDA-LLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLRE---ALDFK 1506
Query: 395 REMLSKGIVPQEST 408
M KG VP T
Sbjct: 1507 NRMAKKGYVPNPIT 1520
>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
Length = 899
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 111/237 (46%), Gaps = 17/237 (7%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQK 233
+LD +A VL++ L+K+ A + + F + ++ + I+ +I G+CK K A +
Sbjct: 331 KLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALE 390
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
+ M G P+ +Y+ I +++ K + +MQE G P VIT T ++
Sbjct: 391 VFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQC 450
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR------FLIYNTMISSACVR- 346
K + A +++E M+ + D Y+ L L K+ R FL+ ++ +
Sbjct: 451 KKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSFLVRKGVVLTKVTYT 510
Query: 347 ------SEEGN---ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
S+ GN A L +K+ + CK D T++ L+ C +K++ + + +L+ M
Sbjct: 511 SLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQM 567
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 25/225 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F +I+G+CK + D A + M D +Y I ++ F++ T+ EM
Sbjct: 302 FTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMF 361
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
G P+V+ T ++ K ++ AL+V+ M+ + C + YSSLI+ L + +
Sbjct: 362 ANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLH 421
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ Y T+I C + E NA +L + +E++ PD + +
Sbjct: 422 KAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLT 481
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C R ++ L + KG+V + T+ L + K
Sbjct: 482 HALCKSGRAEEAYSFL------VRKGVVLTKVTYTSLVDGFSKAG 520
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/345 (20%), Positives = 138/345 (40%), Gaps = 49/345 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI-------DELSNGYVSLAAM 169
F W + G+ HT ++ A+++ L + + +LV + +++ ++ A+
Sbjct: 75 FEWVARRPGFRHTAASHAALLQLLARRRAPANYDKLVVSMVSCSDTAEDMREAVDAIQAI 134
Query: 170 STVMRRLDTRAMSVLMDTLV--KRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRK 227
V L ++M L+ +RN + + +LI G C+TR
Sbjct: 135 RRVGGDLRKACWLLMMMPLMGCRRNEYS-------------------YTILIQGLCETRC 175
Query: 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287
A + M Q G S + +YT I+ C+E L+EM +G PSV T
Sbjct: 176 VREALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNA 235
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF------------ILSKAV---- 331
++ K+ ++ +AL + M+ + C D Y+ LI+ +L+ A+
Sbjct: 236 MIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGLCGEKPDEAEELLNDAIVRGF 295
Query: 332 --RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ + +I+ C +AL+++ + +CK D + + + + K R K+
Sbjct: 296 TPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAK- 354
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTH 434
+ EM + G+ P + + + K A + L+ H
Sbjct: 355 --ETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEH 397
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/295 (19%), Positives = 120/295 (40%), Gaps = 29/295 (9%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G + T TY ++V+ K+ L+++ M + D+ SVL
Sbjct: 501 GVVLTKVTYTSLVDGFSKAGNTDFAAVLIEK-------------MVNEGCKADSYTYSVL 547
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQ-----IFDVLIHGWCKTRKSDYAQKAMKEMF 239
+ L K+ + A + D ++LS + ++I K K D+A+ EM
Sbjct: 548 LQALCKQKKLNEALSIL----DQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMI 603
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G P +YT FI YC+ + ++ + EM+ G P V+T + ++ +
Sbjct: 604 SSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMD 663
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRS--EEGNALKLRQ 357
A ++M C + ++++ I + L+ + ++ + + E +L +
Sbjct: 664 RAFSTLKRMIDASC--EPNYWTYWILLKHFLKMSLVDAHYVDTSGMWNWIELDTVWQLLE 721
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
++ + P T++ + C R+++ ++ + MR K I P E + ML
Sbjct: 722 RMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMR---GKDISPNEEIYTML 773
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 105/275 (38%), Gaps = 33/275 (12%)
Query: 165 SLAAMSTVMRRLDTR----AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIH 220
+LA V RR R + + L+ L +R + A+ K+ + C + + + +
Sbjct: 71 ALAFFEWVARRPGFRHTAASHAALLQLLARRRAPANYDKLVVSMVSCSDTAEDMREAVDA 130
Query: 221 GWCKTRKSDYAQKA---MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
R +KA + M G + SYT I+ C + R+ L M + G
Sbjct: 131 IQAIRRVGGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLVMMVQDG 190
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337
C ++ T T+++ L K +I+ A +V E+M + YN
Sbjct: 191 CSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSV----------------WTYN 234
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
MI C +AL ++ +E + C PD T+ + C +K + L+ +
Sbjct: 235 AMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGLCGEKPDE----AEELLNDA 290
Query: 398 LSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
+ +G P T + K ERID+ L
Sbjct: 291 IVRGFTPTVITFTNIINGYCK------AERIDDAL 319
>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 918
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/325 (20%), Positives = 135/325 (41%), Gaps = 60/325 (18%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI------------DELSNGYVSLAAM 169
++ G TYNA++ L ++++ + ++ + +E+ GY L
Sbjct: 382 SRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILG-- 439
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAH--AYKVFLK-FKDCISLSS--QIFDV------- 217
D + ++M+ +++R A+ Y +K + D + +S +I D+
Sbjct: 440 -------DPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCK 492
Query: 218 --------LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
LI G+CK K + A EM G P+ V+YT I+ YC+++
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSL 552
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
L+ M+ GC+P+V T +++H L K A ++ + M + +
Sbjct: 553 LEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNV------------ 600
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ Y MI C AL++ K+ E C P+ T++ ++ + ++++
Sbjct: 601 ----VTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAE- 655
Query: 390 VLNLMREMLSKGIVPQESTHKMLAE 414
NL E+ G++P E T+ + E
Sbjct: 656 --NLFAELERHGLIPDEITYVKMIE 678
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 20/210 (9%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I++ +I+ CK A+ MK++F+ SPD +YT I +CR+ D +M
Sbjct: 217 IYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQM 276
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------ 327
++GC+P+ +T + +++ L + ++ EA + +M L + I L
Sbjct: 277 AKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCY 336
Query: 328 SKAVRFLI-------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
A R + Y +IS CV A+ L ++ D P+ T+
Sbjct: 337 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNAL 396
Query: 375 LKMCCHKKRMKDGMLVLNLM-REMLSKGIV 403
+ + +R+K +VLNLM R S IV
Sbjct: 397 INILVENRRIKYAFVVLNLMGRNGCSPNIV 426
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 129/313 (41%), Gaps = 42/313 (13%)
Query: 132 TYNAMVEA---LGKSKKFGLMWELVKEIDELSN---------GYVSLAAMSTVMRRLDTR 179
TYN M++ LG KK L+ + + +N GY ++ +R LD
Sbjct: 427 TYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLM 486
Query: 180 ----------AMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKS 228
+ + L+ K + + A+ +F + D + + + LI G+CK K
Sbjct: 487 RDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKL 546
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A ++ M + G P+ +Y I ++ +F + K M E+G P+V+T T +
Sbjct: 547 DTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAM 606
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
+ L K AL+++ KM CL + YSSLI L + + E
Sbjct: 607 IDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKV--------------E 652
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
E A L ++E PD T+ + ++ +++ N + M+ G P T
Sbjct: 653 E--AENLFAELERHGLIPDEITYVKMIEAYIMSGKVEH---AFNFLGRMIKAGCQPTLWT 707
Query: 409 HKMLAEELEKKSL 421
+ +L + L+ + L
Sbjct: 708 YGVLIKGLKNEYL 720
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/235 (19%), Positives = 94/235 (40%), Gaps = 22/235 (9%)
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
+D + ++ ++ LI+ + R+ YA + M ++G SP+ V+Y I+ YC D +
Sbjct: 383 RDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPK 442
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
K + M ++G +++T ++ + AL++ + M+ C D Y+ LI
Sbjct: 443 KAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI 502
Query: 325 FILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
K + + Y +I C + A L + ++ C+
Sbjct: 503 CGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
P+ +T+ + + L + M+ +GI P T+ + + L K
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAE---ELCKVMIEEGIFPNVVTYTAMIDGLCKNG 614
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 85/224 (37%), Gaps = 30/224 (13%)
Query: 197 AYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI 254
A+++F +K K C + + LI G C + A M + G P+ V+Y I
Sbjct: 339 AWRLFVDMKNKGC-EPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALI 397
Query: 255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
+ + L M GC P+++T Y +M C+
Sbjct: 398 NILVENRRIKYAFVVLNLMGRNGCSPNIVT--------------------YNEMIKGYCI 437
Query: 315 TDTSFYSSLIF--ILSKA--VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ L+ +L + + YNT+I C +AL++ + + CKPD +
Sbjct: 438 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 497
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ + C +M+ L EM+ G+ P E T+ L +
Sbjct: 498 YTELICGFCKISKMES---AFGLFNEMVDDGLCPNEVTYTALID 538
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 326 ILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+LS+ V+ LIYN +I++ C +A + +K+ E PD T+ + C K
Sbjct: 206 MLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHD 265
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
+ + V N +M +G P T+ L L + + A + I E++ H
Sbjct: 266 LDSALQVFN---QMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG 315
>gi|302797282|ref|XP_002980402.1| hypothetical protein SELMODRAFT_32257 [Selaginella moellendorffii]
gi|300152018|gb|EFJ18662.1| hypothetical protein SELMODRAFT_32257 [Selaginella moellendorffii]
Length = 457
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 145/330 (43%), Gaps = 51/330 (15%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDELS-----------------NGYVSLAAM 169
PE TY ++E LG+ + ++L +EI GY AA+
Sbjct: 99 VPELATYLMLIEGLGRDHRVKEAFDLFQEIHARGFTAKASSYSYIVCGLAKYGYFDEAAI 158
Query: 170 STVMRRL--------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIH 220
+ R++ +T A +VL+ L K++ V ++FL+ K+ + + + I
Sbjct: 159 Q-LFRKMEGEYGCPPNTYAYNVLLTGLKKKDGVEEMREMFLEMKEKGCEPNLVTYCTYIL 217
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G CK + D A KEM Q SPD V Y+ I +C+ + + L EM EK +P
Sbjct: 218 GLCKAGRVDDAMVVKKEMIQKSCSPDNVVYSILINAFCKVGKIYEGEKLLAEMLEKKLQP 277
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340
V+ + ++ L+KA + +A +++ +M C D +I + M+
Sbjct: 278 DVVCFSSLVDCLDKAGRYGDAYRLFRRMMEQGCKPDA----------------VIASVML 321
Query: 341 SSACVRSEEGNALKLRQK-IEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
S R E AL+L + ++ D P + + +K +++DG + L++ M S
Sbjct: 322 DSFTKRGEVAQALELVDEFVDRDLPLPSAGSINQLVKRIVVGDKVEDG---VRLLKTMAS 378
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERID 429
+G P + ++ L EL ++ NA E ++
Sbjct: 379 RGSRPLQCSYATLLRELCRRK--NAVEALE 406
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 114/279 (40%), Gaps = 47/279 (16%)
Query: 182 SVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L+ L+K A+ +F + K + + +L + + + D A K ++++
Sbjct: 2 NALLVALIKNGRHREAHGIFDSQLKSLAPPDASSYGILANAYVQAGDLDAAVKLLRDL-P 60
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDY--TLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
+ + +Y C + CR K R +D L+EMQ++ P + T +++ L + ++
Sbjct: 61 ASTTANLATYLCVMMGLCRGK--RSIDAIGVLREMQKRNVVPELATYLMLIEGLGRDHRV 118
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF---------------------LIYN 337
EA +++++ + S YS ++ L+K F YN
Sbjct: 119 KEAFDLFQEIHARGFTAKASSYSYIVCGLAKYGYFDEAAIQLFRKMEGEYGCPPNTYAYN 178
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+++ + ++ +++E C+P+ T+ + C R+ D M+V +EM
Sbjct: 179 VLLTGLKKKDGVEEMREMFLEMKEKGCEPNLVTYCTYILGLCKAGRVDDAMVV---KKEM 235
Query: 398 LSKGIVPQESTH-----------------KMLAEELEKK 419
+ K P + K+LAE LEKK
Sbjct: 236 IQKSCSPDNVVYSILINAFCKVGKIYEGEKLLAEMLEKK 274
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 85/182 (46%), Gaps = 17/182 (9%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
++++V+ L K+ ++G + L + + E + D SV++D+ KR
Sbjct: 282 FSSLVDCLDKAGRYGDAYRLFRRMMEQGC-------------KPDAVIASVMLDSFTKRG 328
Query: 193 SVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
VA A ++ +F +D S+ + L+ K + + +K M G P SY
Sbjct: 329 EVAQALELVDEFVDRDLPLPSAGSINQLVKRIVVGDKVEDGVRLLKTMASRGSRPLQCSY 388
Query: 251 TCFIEHYCREKD-FRKVDYTL-KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+ CR K+ ++ L +EM E G P V + I++ AL KA +I++ ++++++
Sbjct: 389 ATLLRELCRRKNAVEALELDLFQEMIESGRIPDVNSYEILVEALCKAGKIFQGHELFKQL 448
Query: 309 KS 310
S
Sbjct: 449 IS 450
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/265 (18%), Positives = 107/265 (40%), Gaps = 24/265 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
D + +L + V+ + A K+ + + + ++ G C+ ++S A ++
Sbjct: 32 DASSYGILANAYVQAGDLDAAVKLLRDLPASTTANLATYLCVMMGLCRGKRSIDAIGVLR 91
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM + P+ +Y IE R+ ++ +E+ +G + + ++ L K
Sbjct: 92 EMQKRNVVPELATYLMLIEGLGRDHRVKEAFDLFQEIHARGFTAKASSYSYIVCGLAKYG 151
Query: 297 QIYE-ALKVYEKMKSD-DCLTDTSFYSSLIFILSKA-------------------VRFLI 335
E A++++ KM+ + C +T Y+ L+ L K +
Sbjct: 152 YFDEAAIQLFRKMEGEYGCPPNTYAYNVLLTGLKKKDGVEEMREMFLEMKEKGCEPNLVT 211
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
Y T I C +A+ +++++ + SC PD ++ + C ++ +G L+
Sbjct: 212 YCTYILGLCKAGRVDDAMVVKKEMIQKSCSPDNVVYSILINAFCKVGKIYEGE---KLLA 268
Query: 396 EMLSKGIVPQESTHKMLAEELEKKS 420
EML K + P L + L+K
Sbjct: 269 EMLEKKLQPDVVCFSSLVDCLDKAG 293
>gi|255544107|ref|XP_002513116.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548127|gb|EEF49619.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1128
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 154/392 (39%), Gaps = 56/392 (14%)
Query: 26 GCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLAS---------WVESLKLNEQS 76
G L NR I + + P FD Q+ D PS S S +L+ S
Sbjct: 472 GGLFSNRQIIKPQNSIKPKNPVPFDLQNWDPQNPCPSSKSPPLSQNHSLSTLSQRLSPIS 531
Query: 77 RISSHALSED-HETDVDKVSEILRKRYPSPDKVVEALKC--------FCFTWAKTQTGYM 127
R A ++ ++ V+E+ + R +PD V E LK F WA Q GY
Sbjct: 532 RFIRDAFRKNSNKWGPPVVAELRKLRRVTPDLVSEVLKVENDPHLASQFFHWAGKQKGYR 591
Query: 128 HTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT 187
H +YNA L +S F +L + +D S G ++ R+ + A L
Sbjct: 592 HNFASYNAYAYCLNRSSFFRAADQLPELMD--SQGKPPTEKQFEILIRMHSDANRGL--- 646
Query: 188 LVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
V H Y+ KF K L ++I D LI KT D A + G
Sbjct: 647 -----RVYHVYQKMKKFGVKPRAFLYNRIMDALI----KTAHLDLALVVYDDFKSDGLVE 697
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLK---EMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
D V+Y I+ C+ F ++D ++ EM+ G P V+ V+ L K ++ E
Sbjct: 698 DSVTYMILIKGLCK---FGRIDEMMEVWEEMKRDGVNPDVMAYATVVTGLCKGGRVAEGY 754
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362
+++++MK + L D + Y LI + + I SAC L Q + +
Sbjct: 755 ELFKEMKENKVLIDRAIYGVLI-------EAFVKDGKIGSAC---------DLLQGLVDS 798
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+ D + ++ C+ KR+ + +M
Sbjct: 799 GYRADLGIYNSLIEGLCNVKRVDKARKLFQIM 830
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 124/294 (42%), Gaps = 32/294 (10%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G + TY +++ L K FG + E+++ +E+ V+ D A + +
Sbjct: 694 GLVEDSVTYMILIKGLCK---FGRIDEMMEVWEEMKRDGVNP----------DVMAYATV 740
Query: 185 MDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+ L K VA Y++F + K+ + + I+ VLI + K K A ++ + G+
Sbjct: 741 VTGLCKGGRVAEGYELFKEMKENKVLIDRAIYGVLIEAFVKDGKIGSACDLLQGLVDSGY 800
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
D Y IE C K K + M ++G + T ++ + + K++ E K
Sbjct: 801 RADLGIYNSLIEGLCNVKRVDKARKLFQIMVQEGLELDFKTVNPMLVSYAEMKRMDEFCK 860
Query: 304 VYEKMKS------DDCLTDTSFYSSLIFILSKA------------VRFLIYNTMISSACV 345
+ +M+ DD SF I++ A + LIYNT++ +
Sbjct: 861 LLVQMERLGFSVMDDISKLFSFLVRREEIITLALEVFEELKVKGYISVLIYNTLMEALLK 920
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
E AL L ++++ +C+PD T++ ++ +++ + N + EM S
Sbjct: 921 VGEVRKALSLFSEMKDLNCEPDSNTYSIAVICFVEDGNIQEACVCHNKIIEMSS 974
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 17/192 (8%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
YN ++EAL K + E+ + M + D+ S+ + V+
Sbjct: 911 YNTLMEALLK-------------VGEVRKALSLFSEMKDLNCEPDSNTYSIAVICFVEDG 957
Query: 193 SVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS-PDGVSY 250
++ A K + S+ S + L G C + D A +++ + S P Y
Sbjct: 958 NIQEACVCHNKIIEMSSVPSVAAYCSLTKGLCDIGEIDEAMMLVRDCLGNVTSGPMEFKY 1017
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T + H CR D KV L EM + C P+ + + ++ + K + EA KV+ ++
Sbjct: 1018 TLTVLHVCRSGDAEKVIEVLNEMMHENCPPNEVILSAIISGMCKHGTLEEARKVFTNLRE 1077
Query: 311 DDCLTD--TSFY 320
LT+ T FY
Sbjct: 1078 RKLLTEAKTIFY 1089
>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Vitis vinifera]
Length = 644
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 107/243 (44%), Gaps = 26/243 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G K KS+ A K+M + G P+ V Y+ I+ CRE + L EM
Sbjct: 350 YSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMV 409
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
KGC P+ T + ++ K +A++V+++M ++C+ + YS LI
Sbjct: 410 NKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLR 469
Query: 325 -------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKI--EEDSCKPDCETHAR 373
+L + +R + Y++MI C LKL ++ +E +PD T+
Sbjct: 470 EAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNI 529
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK--SLGNAKERIDEL 431
L+ C + + ++L+ ML +G P T + L +K + +E +DEL
Sbjct: 530 LLRALCKQNSISHA---IDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLDEL 586
Query: 432 LTH 434
+
Sbjct: 587 VVR 589
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 103/230 (44%), Gaps = 24/230 (10%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
L+ G CK + D A + EM G P V++ I C++ D +V + M KG
Sbjct: 213 LMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKG 272
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL--- 334
C P+ +T +++ L ++ +A+ + ++M + C+ + Y +LI L K R +
Sbjct: 273 CVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGV 332
Query: 335 ----------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
Y+T+IS + A+ L +K+ E C+P+ ++ +
Sbjct: 333 HLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGL 392
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
C + ++ + +L EM++KG P T+ L + K GN+++ I
Sbjct: 393 CREGKLDEAKEILC---EMVNKGCTPNAFTYSSLIKGFFKT--GNSQKAI 437
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/320 (19%), Positives = 126/320 (39%), Gaps = 50/320 (15%)
Query: 103 PSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE---- 158
P PD++ F A Y T+ +++E S FG ++++ +
Sbjct: 45 PIPDQI--------FKSASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRV 96
Query: 159 ------------LSNGYVSLAAMSTVMRRLD-------TRAMSVLMDTLVKRNSVAHA-- 197
++ A+ R +D R+ + +++ +++ A
Sbjct: 97 FIEKNFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALE 156
Query: 198 -YKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256
Y+ + K IS + F+++I CK D A + +EM PD +Y ++
Sbjct: 157 FYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDG 216
Query: 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316
C+E + L EMQ +GC PS +T ++++ L K + K+ + M C+ +
Sbjct: 217 LCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPN 276
Query: 317 TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
+ YNT+I+ C++ + A+ L ++ C P+ T+ +
Sbjct: 277 E----------------VTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLIN 320
Query: 377 MCCHKKRMKDGMLVLNLMRE 396
+ R DG+ +L+ + E
Sbjct: 321 GLVKQGRSVDGVHLLSSLEE 340
>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
Length = 552
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/315 (21%), Positives = 134/315 (42%), Gaps = 41/315 (13%)
Query: 125 GYMHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
G+ P+ TY+ +V AL + + LV E+ +++G V+ A + V+R
Sbjct: 112 GWDLAPDKFTYSTVVSALADAGRVDDAVALVHEM--VADGVVAAEAFNPVLR-------- 161
Query: 183 VLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+++ V A K+F ++ K C+ ++ ++VL+HG ++ A M+ M +
Sbjct: 162 ----AMLRAGDVKGAAKLFEFMQLKGCVP-TAATYNVLVHGLLVCGRAGAAMGVMRRMER 216
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P ++Y ++ R + +EM+ G + + V+ K+ +I
Sbjct: 217 EGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDC 276
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIYNTMIS 341
ALKV+E M + + YS++I L+ A + Y +MI
Sbjct: 277 ALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNIITYGSMIQ 336
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
+ AL + +++ C P+ +++ + C+ R+KD M+V + ML +G
Sbjct: 337 GYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCNVGRLKDAMMV---WKHMLDRG 393
Query: 402 IVPQESTHKMLAEEL 416
P + + + L
Sbjct: 394 CAPDTIAYTSMIKGL 408
>gi|124360979|gb|ABN08951.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 511
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 81/374 (21%), Positives = 150/374 (40%), Gaps = 52/374 (13%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
+ IL + + S ++AL+ F FT T T + + L + + F W L+
Sbjct: 74 IQNILIRLFASHSNGLKALEFFNFTIKNTHTN--PCASSLEITLHILTRMRYFDKAWSLL 131
Query: 154 KEIDELSNGYVSLAAMSTVM--------------------------RRLDTRAMSVLMDT 187
+I G ++L AM+ ++ R + +VL+
Sbjct: 132 IQIANTYPGLLTLKAMNIMLAKIAKYKSFEETLDGFRRMEEEVFVGREFGSDEFNVLLKV 191
Query: 188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+ + A VF++F D ++ ++L+ G+ +T + EM + GF PD
Sbjct: 192 FATQRQMKEARSVFVRFVDRFKADTKSMNILLLGFKETGDVTSVELFYHEMVKRGFKPDS 251
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
VS+ I+ YC++ F L+EM+ + SV T T ++H + +A +++ +
Sbjct: 252 VSFGIRIDAYCKKGRFGDALRLLEEMESRKFVVSVETITTLIHGAGLVQNPGKAWQLFNE 311
Query: 308 MKSDDCLTDTSFYSSLIFILSK---AVRFL-IYNTMISSACV----------------RS 347
+ + + D+ Y++LI L + V L + + MI + R
Sbjct: 312 IPLRNLVVDSGVYNALITTLVRNRDVVSALSLMDGMIEKQILPDGVTYHTIFLGLMKSRG 371
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
EG + +L QK+ + P T +K CH R+ L L+L ++ KG P
Sbjct: 372 IEGVS-ELYQKMTKRKFVPKTRTVVVLMKYFCHNSRLD---LSLSLWNYLVEKGHCPHAH 427
Query: 408 THKMLAEELEKKSL 421
+L L + L
Sbjct: 428 ALDLLVTGLCSRGL 441
>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Brachypodium distachyon]
Length = 726
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 116/291 (39%), Gaps = 58/291 (19%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
DT + S+L+D L K+ V Y + ++ ++ I+ + + L+HG C+ K + A +
Sbjct: 315 DTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSLLHGLCRAGKVELAFELF 374
Query: 236 K-----------------------------------EMFQHGFSPDGVSYTCFIEHYCRE 260
+ +M H F PD +YT I +CR
Sbjct: 375 RRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPDAYNYTSLIYAFCRH 434
Query: 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320
++ + M + G P+V+TCTI++ K + I EA K++ + + Y
Sbjct: 435 RNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMY 494
Query: 321 SSLIFILSKAVR-------------------FLIYNTMISSACVRSEEGNALKLRQKIEE 361
+I L K + ++Y+ +I S + A +L K+ +
Sbjct: 495 RVIINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLD 554
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ KP+ T+ + CH R+ + V+ L + M+ +G+ P + L
Sbjct: 555 EGTKPNVFTYTSLINGLCHDDRLPE---VVTLFKHMIWEGLTPDRILYTSL 602
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 20/232 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
++L+D K + A+ K + I + ++ V+I+G CK KSD+ +M +
Sbjct: 460 TILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIK 519
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G+ PD V Y+ I+ + + + +M ++G KP+V T T +++ L ++ E
Sbjct: 520 RGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPE 579
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
+ +++ M + D Y+SLI C RS AL++ + +
Sbjct: 580 VVTLFKHMIWEGLTPDRILYTSLIV----------------CYCKRSNMKAALEIFRGMG 623
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ D + L K DG LM EM +KG+ P T+ L
Sbjct: 624 KLGLSADAFLYT-CLIGGFSKVLAMDGAQC--LMEEMTNKGLTPSVVTYTNL 672
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 27/228 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ +I G+C+ + A + M + G PD SY+ ++ C++ D L EM
Sbjct: 284 FNAVIQGFCREGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMA 343
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
G P++++ + ++H L +A ++ A +++ +++ D +
Sbjct: 344 RNGIAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHD----------------HI 387
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+Y+ +++ C L + + PD + + C + + D + V L
Sbjct: 388 VYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFEL- 446
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKER-IDELLTHATEQRTF 441
ML G+ P T +L + G KER IDE + R F
Sbjct: 447 --MLDSGVSPNVVTCTILVD-------GFGKERMIDEAFLFLHKVRQF 485
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 101/273 (36%), Gaps = 32/273 (11%)
Query: 89 TDVDKVSEILRKRYPSPDKVVEAL------------KCFCFTWAKTQTGYMHTPETYNAM 136
TD V E++ SP+ V + + F F Q G + Y +
Sbjct: 438 TDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRVI 497
Query: 137 VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAH 196
+ L K K +W + D + GYV DT S+++D+ VK +
Sbjct: 498 INGLCKVNKSDHVWGIFA--DMIKRGYVP-----------DTVVYSIIIDSFVKALKLPE 544
Query: 197 AYKVFLKFKDCISLSSQIFDV--LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI 254
A+++F K D +F LI+G C + K M G +PD + YT I
Sbjct: 545 AFRLFHKMLD-EGTKPNVFTYTSLINGLCHDDRLPEVVTLFKHMIWEGLTPDRILYTSLI 603
Query: 255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
YC+ + + + M + G T ++ K + A + E+M +
Sbjct: 604 VCYCKRSNMKAALEIFRGMGKLGLSADAFLYTCLIGGFSKVLAMDGAQCLMEEMTNKGLT 663
Query: 315 TDTSFYSSLIF----ILSKAVRFLIYNTMISSA 343
Y++LI I + + YN+M+ +
Sbjct: 664 PSVVTYTNLIIGYFKIGDERKANMTYNSMLQAG 696
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 190 KRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
KR+++ A ++F K +S + ++ LI G+ K D AQ M+EM G +P V
Sbjct: 608 KRSNMKAALEIFRGMGKLGLSADAFLYTCLIGGFSKVLAMDGAQCLMEEMTNKGLTPSVV 667
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
+YT I Y + D RK + T M + G P
Sbjct: 668 TYTNLIIGYFKIGDERKANMTYNSMLQAGITP 699
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/213 (18%), Positives = 83/213 (38%), Gaps = 25/213 (11%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
+ + Q+ + L+ + + YA+ +M G SP+ SY+ + Y +
Sbjct: 170 VGVELQLCNFLLKCLVERNQIIYARSLFDDMKSSGPSPNVYSYSVLMSAYTHGDRLYLAE 229
Query: 268 Y--TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM--KSDDCLTDTSFYSSL 323
L EM+ KG KP+ T ++ L + +Q+ A + + + + C T
Sbjct: 230 AFELLSEMEMKGVKPNAATYGTYLYGLSRTRQVASAWNFLQMLCQRGNPCNT-------- 281
Query: 324 IFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+N +I C + A+++ +++ PD +++ + C +
Sbjct: 282 ----------YCFNAVIQGFCREGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGD 331
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ G +L+ EM GI P ++ L L
Sbjct: 332 VLTGY---DLLVEMARNGIAPTLVSYSSLLHGL 361
>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 527
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 115/259 (44%), Gaps = 33/259 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY +++AL K K VKE L LA M+ + + + + LMD
Sbjct: 222 TYTILMDALCKEGK-------VKEAKNL------LAVMTKEGVKPNVVSYNTLMDGYCLI 268
Query: 192 NSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V +A ++F + ++ + ++++I CK+++ D A ++E+ P+ V+Y
Sbjct: 269 GEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTY 328
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ I+ +C+ LKEM +G V+T T ++ AL K + + +A ++ KMK
Sbjct: 329 SSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKE 388
Query: 311 DDCLTDTSFYSSLIFILSKAVR----------FLI---------YNTMISSACVRSEEGN 351
+ Y++LI L K R L+ YN MIS C
Sbjct: 389 RGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDE 448
Query: 352 ALKLRQKIEEDSCKPDCET 370
AL ++ K+EE+ C PD T
Sbjct: 449 ALAMKSKMEENGCIPDAVT 467
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 111/258 (43%), Gaps = 22/258 (8%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQK 233
++D + + L++ L K A K+ +D + + + ++ +I G CK + + A
Sbjct: 112 QMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYD 171
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
EM G P+ ++Y+ I +C + L EM K P+V T TI+M AL
Sbjct: 172 LYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALC 231
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
K ++ EA + M + + + YNT++ C+ E NA
Sbjct: 232 KEGKVKEAKNLLAVMTKEGVKPNV----------------VSYNTLMDGYCLIGEVQNAK 275
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
++ + + P+ ++ + C KR+ + M NL+RE+L K +VP T+ L
Sbjct: 276 QMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAM---NLLREVLHKNMVPNTVTYSSLI 332
Query: 414 EELEKKSLGNAKERIDEL 431
+ K LG +D L
Sbjct: 333 DGFCK--LGRITSALDLL 348
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 23/223 (10%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI------------DELSNGYVSLAAM 169
Q G +YN M++ L KSK+ L++E+ L +G+ L +
Sbjct: 282 VQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRI 341
Query: 170 STVMRRL----------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVL 218
++ + L D + L+D L K ++ A +F+K K+ I + + L
Sbjct: 342 TSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTAL 401
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278
I G CK + AQK + + G + +Y I C+E + +M+E GC
Sbjct: 402 IDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGC 461
Query: 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
P +T I++ +L + Q +A K+ +M + D L F+
Sbjct: 462 IPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIAKDLLRFRDFHG 504
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 120/292 (41%), Gaps = 42/292 (14%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR--LDTRAMSV--LMDTL 188
YN +++ L K K ++L E+D + ++ ST++ L + M L++ +
Sbjct: 153 YNTIIDGLCKDKLVNEAYDLYSEMDA-RGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEM 211
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
+ +N + Y + +L+ CK K A+ + M + G P+ V
Sbjct: 212 ILKNINPNVYT---------------YTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVV 256
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
SY ++ YC + + M +KG P+V + I++ L K+K++ EA+ + ++
Sbjct: 257 SYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREV 316
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEE 349
+ + +T YSSLI K R + Y +++ + C
Sbjct: 317 LHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNL 376
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
A L K++E +P+ T+ + C R K+ L + +L KG
Sbjct: 377 DKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQ---KLFQHLLVKG 425
>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
Length = 802
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 14/194 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY A+++ L K+ K EL+ + LSNG + L+D K
Sbjct: 446 TYGALIDGLCKAHKVVDAQELLDAM--LSNGC-----------EPNHIIYDALIDGFCKV 492
Query: 192 NSVAHAYKVFLKFKDCISLSS-QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ +A +VFL+ C L + + LI K R+ D A K + +M + +P+ V+Y
Sbjct: 493 GKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTY 552
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
T I+ CR + +K L M+EKGC P+V+T T ++ L K+ ++ +L+++ +M +
Sbjct: 553 TAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMST 612
Query: 311 DDCLTDTSFYSSLI 324
C + Y LI
Sbjct: 613 KGCAPNYVTYRVLI 626
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 117/271 (43%), Gaps = 18/271 (6%)
Query: 163 YVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK--FKDCISLSSQIFDVLIH 220
Y + A S V+ +++T + + + K + KV + F S S++ L
Sbjct: 241 YEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFL-- 298
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
C+ K + A +EM G +PD +YT I+ +C+ + EM+ GC
Sbjct: 299 --CEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSA 356
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL----IY 336
+V+T T ++HA KAKQ+ +A ++ +M C +T YS+L+ L KA +Y
Sbjct: 357 NVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVY 416
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
+I ++ G+ K DS P+ T+ + C ++ D L+
Sbjct: 417 TKLIGTS---DNVGSDFYFEGK-HTDSIAPNVVTYGALIDGLCKAHKVVDAQ---ELLDA 469
Query: 397 MLSKGIVPQESTHKMLAEELEKKS-LGNAKE 426
MLS G P + L + K + NA+E
Sbjct: 470 MLSNGCEPNHIIYDALIDGFCKVGKIDNAQE 500
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 100/253 (39%), Gaps = 36/253 (14%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-----------------KDCISLSSQIFDVLI 219
+T S L+D L K + A +V+ K D I+ + + LI
Sbjct: 392 NTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALI 451
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
G CK K AQ+ + M +G P+ + Y I+ +C+ M + G
Sbjct: 452 DGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYL 511
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTM 339
P+V T T ++ A+ K +++ A+KV +M C + + Y M
Sbjct: 512 PTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNV----------------VTYTAM 555
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I C E ALKL +EE C P+ T+ + ++ L L L +M +
Sbjct: 556 IDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVD---LSLQLFIQMST 612
Query: 400 KGIVPQESTHKML 412
KG P T+++L
Sbjct: 613 KGCAPNYVTYRVL 625
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 71/339 (20%), Positives = 142/339 (41%), Gaps = 56/339 (16%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEI-------DELSNGYVSLA---------A 168
GY + TYNA+V+ L + + + + + KE+ D+ + G + A A
Sbjct: 35 GYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDA 94
Query: 169 MSTVMR---RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWC 223
+ + R +LDT + ++ L++ + A FL C S + + L+ G+
Sbjct: 95 LVMIEREDFKLDTVLCTQMISGLMEASLFDEAIS-FLHRMRCNSCIPNVVTYRTLLTGFL 153
Query: 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
K ++ + ++ + M + G +P+ + + YC +D+ LK M + GC P +
Sbjct: 154 KKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYV 213
Query: 284 TCTIVMHALEKAKQIYE------ALKVYEKMKSDDCL---TDTSFYSSLIFILSK-AVRF 333
I + ++ +++ A KVYE+M + C+ +T+ ++ + + K + F
Sbjct: 214 AYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAF 273
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNL 393
I M+ V PD T+++ + C +++ L L
Sbjct: 274 QIIKVMMGKGFV--------------------PDTSTYSKVITFLCEAMKVEKAFL---L 310
Query: 394 MREMLSKGIVPQESTHKMLAEELEKKSL-GNAKERIDEL 431
+EM S G+ P T+ +L + K L A+ DE+
Sbjct: 311 FQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEM 349
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 28/232 (12%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY----- 268
+F+ L+H +C R YA K +K M G P V+Y FI C ++ D
Sbjct: 179 LFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSICGGEELPSPDLLALAE 238
Query: 269 -TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+EM C + + L + A ++ + M + DTS YS +I L
Sbjct: 239 KVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFL 298
Query: 328 SKAVR----FLI---------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
+A++ FL+ Y +I S C A ++ C +
Sbjct: 299 CEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANV 358
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
T+ L K++ + N M+ G P T+ L + L K
Sbjct: 359 VTYTALLHAYLKAKQLPQASDIFN---RMIDAGCPPNTITYSALVDGLCKAG 407
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 112/274 (40%), Gaps = 48/274 (17%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELS--NGYVSLAAMSTVMRRLDTR 179
++ GY+ T TY ++++A+ K ++ L +++ ++ E S V+ AM
Sbjct: 506 SKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAM---------- 555
Query: 180 AMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
+D L + A K+ ++ K C S + + LI G K+ K D + + +
Sbjct: 556 -----IDGLCRIGECQKALKLLSMMEEKGC-SPNVVTYTALIDGLGKSGKVDLSLQLFIQ 609
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT--CTIVMHALEKA 295
M G +P+ V+Y I H C + L EM++ P + C++V +
Sbjct: 610 MSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTY-WPKYLQGYCSVVQGF---S 665
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL--------------------- 334
K+ +L + E+++S + Y LI SKA R
Sbjct: 666 KKFIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSK 725
Query: 335 -IYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
+Y ++I + C+ S+ A +L +I P+
Sbjct: 726 DMYTSLIQALCLASQLEKAFELYSEITRKGVVPE 759
>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
Length = 918
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/325 (20%), Positives = 135/325 (41%), Gaps = 60/325 (18%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI------------DELSNGYVSLAAM 169
++ G TYNA++ L ++++ + ++ + +E+ GY L
Sbjct: 382 SRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILG-- 439
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAH--AYKVFLK-FKDCISLSS--QIFDV------- 217
D + ++M+ +++R A+ Y +K + D + +S +I D+
Sbjct: 440 -------DPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCK 492
Query: 218 --------LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
LI G+CK K + A EM G P+ V+YT I+ YC+++
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSL 552
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
L+ M+ GC+P+V T +++H L K A ++ + M + +
Sbjct: 553 LEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNV------------ 600
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ Y MI C AL++ K+ E C P+ T++ ++ + ++++
Sbjct: 601 ----VTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAE- 655
Query: 390 VLNLMREMLSKGIVPQESTHKMLAE 414
NL E+ G++P E T+ + E
Sbjct: 656 --NLFAELERHGLIPDEITYVKMIE 678
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 20/210 (9%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I++ +I+ CK A+ MK++F+ SPD +YT I +CR+ D +M
Sbjct: 217 IYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQM 276
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------ 327
++GC+P+ +T + +++ L + ++ EA + +M L + I L
Sbjct: 277 AKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCY 336
Query: 328 SKAVRFLI-------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
A R + Y +IS CV A+ L ++ D P+ T+
Sbjct: 337 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNAL 396
Query: 375 LKMCCHKKRMKDGMLVLNLM-REMLSKGIV 403
+ + +R+K +VLNLM R S IV
Sbjct: 397 INILVENRRIKYAFVVLNLMGRNGCSPNIV 426
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 129/313 (41%), Gaps = 42/313 (13%)
Query: 132 TYNAMVEA---LGKSKKFGLMWELVKEIDELSN---------GYVSLAAMSTVMRRLDTR 179
TYN M++ LG KK L+ + + +N GY ++ +R LD
Sbjct: 427 TYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLM 486
Query: 180 ----------AMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKS 228
+ + L+ K + + A+ +F + D + + + LI G+CK K
Sbjct: 487 RDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKL 546
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A ++ M + G P+ +Y I ++ +F + K M E+G P+V+T T +
Sbjct: 547 DTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAM 606
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
+ L K AL+++ KM CL + YSSLI L + + E
Sbjct: 607 IDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKV--------------E 652
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
E A L ++E PD T+ + ++ +++ N + M+ G P T
Sbjct: 653 E--AENLFAELERHGLIPDEITYVKMIEAYIMSGKVEH---AFNFLGRMIKAGCQPTLWT 707
Query: 409 HKMLAEELEKKSL 421
+ +L + L+ + L
Sbjct: 708 YGVLIKGLKNEYL 720
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/235 (19%), Positives = 94/235 (40%), Gaps = 22/235 (9%)
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
+D + ++ ++ LI+ + R+ YA + M ++G SP+ V+Y I+ YC D +
Sbjct: 383 RDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPK 442
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
K + M ++G +++T ++ + AL++ + M+ C D Y+ LI
Sbjct: 443 KAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI 502
Query: 325 FILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
K + + Y +I C + A L + ++ C+
Sbjct: 503 CGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
P+ +T+ + + L + M+ +GI P T+ + + L K
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAE---ELCKVMIEEGIFPNVVTYTAMIDGLCKNG 614
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 85/224 (37%), Gaps = 30/224 (13%)
Query: 197 AYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI 254
A+++F +K K C + + LI G C + A M + G P+ V+Y I
Sbjct: 339 AWRLFVDMKNKGC-EPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALI 397
Query: 255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
+ + L M GC P+++T Y +M C+
Sbjct: 398 NILVENRRIKYAFVVLNLMGRNGCSPNIVT--------------------YNEMIKGYCI 437
Query: 315 TDTSFYSSLIF--ILSKA--VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ L+ +L + + YNT+I C +AL++ + + CKPD +
Sbjct: 438 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 497
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ + C +M+ L EM+ G+ P E T+ L +
Sbjct: 498 YTELICGFCKISKMES---AFGLFNEMVDDGLCPNEVTYTALID 538
Score = 38.1 bits (87), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 326 ILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+LS+ V+ LIYN +I++ C +A + +K+ E PD T+ + C K
Sbjct: 206 MLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHD 265
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
+ + V N +M +G P T+ L L + + A + I E++ H
Sbjct: 266 LDSALQVFN---QMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG 315
>gi|147840993|emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]
Length = 418
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 101/229 (44%), Gaps = 30/229 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYV--SLAAMSTVMRRL--DTR-------- 179
TYN ++ A S + G W + DE+ +V ++ T++ L D+R
Sbjct: 150 TYNILINACCLSGRLGDAWNV---FDEMLRKHVCPNVVTFGTLISGLCRDSRLDEASRLK 206
Query: 180 --------------AMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCK 224
+ LM L + N ++ A+++ + + + L S I+ LI K
Sbjct: 207 EDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAALFK 266
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
+ D ++EM ++G PD V+Y I +C EKDF L+EM KGCKP VI+
Sbjct: 267 VGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVVKGCKPDVIS 326
Query: 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
+++ L K + EA ++E M C D Y L L + ++F
Sbjct: 327 YNVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQF 375
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 14/178 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
Y ++++ L + + L +EL KE M RLD+ S L+ L K
Sbjct: 221 VYASLMKGLCRVNELSLAFELKKE-------------MVANKLRLDSGIYSTLIAALFKV 267
Query: 192 NSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ V + + + + ++ +I G+C + + A ++EM G PD +SY
Sbjct: 268 GRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVVKGCKPDVISY 327
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
I C+E +R+ + ++M +GC P V + I+ L + Q EA + ++M
Sbjct: 328 NVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFILDEM 385
>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
Length = 1007
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/325 (20%), Positives = 135/325 (41%), Gaps = 60/325 (18%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI------------DELSNGYVSLAAM 169
++ G TYNA++ L ++++ + ++ + +E+ GY L
Sbjct: 382 SRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILG-- 439
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAH--AYKVFLK-FKDCISLSS--QIFDV------- 217
D + ++M+ +++R A+ Y +K + D + +S +I D+
Sbjct: 440 -------DPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCK 492
Query: 218 --------LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
LI G+CK K + A EM G P+ V+YT I+ YC+++
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSL 552
Query: 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329
L+ M+ GC+P+V T +++H L K A ++ + M + +
Sbjct: 553 LEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNV------------ 600
Query: 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ Y MI C AL++ K+ E C P+ T++ ++ + ++++
Sbjct: 601 ----VTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAE- 655
Query: 390 VLNLMREMLSKGIVPQESTHKMLAE 414
NL E+ G++P E T+ + E
Sbjct: 656 --NLFAELERHGLIPDEITYVKMIE 678
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 20/210 (9%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
I++ +I+ CK A+ MK++F+ SPD +YT I +CR+ D +M
Sbjct: 217 IYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQM 276
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------ 327
++GC+P+ +T + +++ L + ++ EA + +M L + I L
Sbjct: 277 AKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCY 336
Query: 328 SKAVRFLI-------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
A R + Y +IS CV A+ L ++ D P+ T+
Sbjct: 337 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNAL 396
Query: 375 LKMCCHKKRMKDGMLVLNLM-REMLSKGIV 403
+ + +R+K +VLNLM R S IV
Sbjct: 397 INILVENRRIKYAFVVLNLMGRNGCSPNIV 426
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 129/313 (41%), Gaps = 42/313 (13%)
Query: 132 TYNAMVEA---LGKSKKFGLMWELVKEIDELSN---------GYVSLAAMSTVMRRLDTR 179
TYN M++ LG KK L+ + + +N GY ++ +R LD
Sbjct: 427 TYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLM 486
Query: 180 ----------AMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKS 228
+ + L+ K + + A+ +F + D + + + LI G+CK K
Sbjct: 487 RDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKL 546
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D A ++ M + G P+ +Y I ++ +F + K M E+G P+V+T T +
Sbjct: 547 DTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAM 606
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
+ L K AL+++ KM CL + YSSLI L + + E
Sbjct: 607 IDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKV--------------E 652
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
E A L ++E PD T+ + ++ +++ N + M+ G P T
Sbjct: 653 E--AENLFAELERHGLIPDEITYVKMIEAYIMSGKVEH---AFNFLGRMIKAGCQPTLWT 707
Query: 409 HKMLAEELEKKSL 421
+ +L + L+ + L
Sbjct: 708 YGVLIKGLKNEYL 720
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/235 (19%), Positives = 94/235 (40%), Gaps = 22/235 (9%)
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
+D + ++ ++ LI+ + R+ YA + M ++G SP+ V+Y I+ YC D +
Sbjct: 383 RDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPK 442
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
K + M ++G +++T ++ + AL++ + M+ C D Y+ LI
Sbjct: 443 KAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELI 502
Query: 325 FILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
K + + Y +I C + A L + ++ C+
Sbjct: 503 CGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
P+ +T+ + + L + M+ +GI P T+ + + L K
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAE---ELCKVMIEEGIFPNVVTYTAMIDGLCKNG 614
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 85/224 (37%), Gaps = 30/224 (13%)
Query: 197 AYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI 254
A+++F +K K C + + LI G C + A M + G P+ V+Y I
Sbjct: 339 AWRLFVDMKNKGC-EPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALI 397
Query: 255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
+ + L M GC P+++T Y +M C+
Sbjct: 398 NILVENRRIKYAFVVLNLMGRNGCSPNIVT--------------------YNEMIKGYCI 437
Query: 315 TDTSFYSSLIF--ILSKA--VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ L+ +L + + YNT+I C +AL++ + + CKPD +
Sbjct: 438 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 497
Query: 371 HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ + C +M+ L EM+ G+ P E T+ L +
Sbjct: 498 YTELICGFCKISKMES---AFGLFNEMVDDGLCPNEVTYTALID 538
Score = 38.1 bits (87), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 326 ILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+LS+ V+ LIYN +I++ C +A + +K+ E PD T+ + C K
Sbjct: 206 MLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHD 265
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
+ + V N +M +G P T+ L L + + A + I E++ H
Sbjct: 266 LDSALQVFN---QMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG 315
>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 19/220 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ +I+G CKT K A+ + EM + G SPD +Y + CR + + EM
Sbjct: 327 YNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMP 386
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+G P +++ + ++ L K + +ALK + MK+ D +
Sbjct: 387 SQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDN----------------V 430
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
IY +I C ALK+R ++ E C D T+ L C +K + + L
Sbjct: 431 IYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEAD---ELF 487
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTH 434
EM +G+ P T L K N + E++
Sbjct: 488 TEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQ 527
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 126/330 (38%), Gaps = 45/330 (13%)
Query: 132 TYNAMVEALGKSKKF----GLMWELVK------------------EIDELSNGYVSLAAM 169
TYNA++ L K+ K+ G++ E++K D + + M
Sbjct: 326 TYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEM 385
Query: 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKS 228
+ D + S L+ L K + A K F K+ ++ + I+ +LI G+C+
Sbjct: 386 PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVM 445
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
A K EM + G D V+Y + C+EK + D EM E+G P T T +
Sbjct: 446 SEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 505
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--------------- 333
++ K + +A+ ++E M + D Y++LI K
Sbjct: 506 INGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRI 565
Query: 334 ----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389
+ Y +I+ C A +L ++ E + T +K C R + +
Sbjct: 566 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYC---RAGNAVK 622
Query: 390 VLNLMREMLSKGIVPQESTHKMLAEELEKK 419
+ ML KGIVP T+ L K+
Sbjct: 623 ADEFLSNMLLKGIVPDGITYNTLINGFIKE 652
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/327 (21%), Positives = 137/327 (41%), Gaps = 47/327 (14%)
Query: 140 LGKSKKFGLMWELVKEIDE-LSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAY 198
+G + G+M E +K DE L G V LD + +++ L K ++ A
Sbjct: 436 IGGFCRNGVMSEALKVRDEMLEQGCV-----------LDVVTYNTILNGLCKEKMLSEAD 484
Query: 199 KVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY 257
++F + + + F LI+G+ K + A + M Q PD V+Y I+ +
Sbjct: 485 ELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGF 544
Query: 258 CREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM--------- 308
C+ + KV+ +M + P+ I+ I+++ + EA +++++M
Sbjct: 545 CKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATI 604
Query: 309 -----------KSDDCLTDTSFYSSLIF--ILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ + + F S+++ I+ + YNT+I+ A L
Sbjct: 605 ITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGI---TYNTLINGFIKEENMDRAFAL 661
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH-KMLAE 414
K+E PD T+ L + RM++ L+ M +M+ +G+ P ST+ ++
Sbjct: 662 VNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI---MLKMIERGVNPDRSTYTSLING 718
Query: 415 ELEKKSLGNAKERIDELLTHATEQRTF 441
+ + +L A DE+L QR F
Sbjct: 719 HVTQNNLKEAFRVHDEML-----QRGF 740
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 92/197 (46%), Gaps = 20/197 (10%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS--VLMDTLV 189
TYN +++ K + +++++EL N +S RR+ +S +L++
Sbjct: 536 TYNTLIDGFCKGSE-------MEKVNELWNDMIS--------RRIYPNHISYGILINGYC 580
Query: 190 KRNSVAHAYKVFLKFKDCISLSSQIF--DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
V+ A++++ + + + I + ++ G+C+ + A + + M G PDG
Sbjct: 581 NMGCVSEAFRLWDEMVE-KGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDG 639
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
++Y I + +E++ + + +M+ G P VIT ++++ + ++ EA + K
Sbjct: 640 ITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLK 699
Query: 308 MKSDDCLTDTSFYSSLI 324
M D S Y+SLI
Sbjct: 700 MIERGVNPDRSTYTSLI 716
>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g74580
gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 763
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 140/315 (44%), Gaps = 43/315 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMV---EALGKSKKFGLMW--ELVKEIDELSNGYVSLAA--- 168
FT+ G H ET A+ EALGK K ++ L+K LSN + L A
Sbjct: 357 FTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKG---LSNQGMILEAAQL 413
Query: 169 ---MSTVMRRLDTRAMSVLMDTLVKRNSVAHA---YKVFLK---FKDCISLSSQIFDVLI 219
MS + + ++L++ L K V+ A KV + F D + F++LI
Sbjct: 414 ANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFT-----FNILI 468
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
HG+ K + A + + M +G PD +Y + C+ F V T K M EKGC
Sbjct: 469 HGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCA 528
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTM 339
P++ T I++ +L + +++ EAL + E+MK+ D AV F T+
Sbjct: 529 PNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPD-------------AVTF---GTL 572
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I C + A L +K+EE + K T ++ + +++ M L +EM+
Sbjct: 573 IDGFCKNGDLDGAYTLFRKMEE-AYKVSSSTPTYNIIIHAFTEKLNVTM-AEKLFQEMVD 630
Query: 400 KGIVPQESTHKMLAE 414
+ + P T++++ +
Sbjct: 631 RCLGPDGYTYRLMVD 645
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 132/337 (39%), Gaps = 45/337 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F + + G+ HT TY +++E LG KF M E++ ++ E ++ M+
Sbjct: 27 FNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNY 86
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDC---ISLSSQIFDVLIHGWCKTRKSDYA 231
++ V A VF + F DC + + I VL+ + D A
Sbjct: 87 G------------RKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVD----SGYFDQA 130
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT-CTIVMH 290
K M G +PD S+T ++ +C+ L M +GC+ +V+ CT+V
Sbjct: 131 HKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGG 190
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV------------------- 331
E+ + E +++ KM + S ++ L+ +L K
Sbjct: 191 FYEENFKA-EGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLP 249
Query: 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
YN I C R E A+++ + E KPD T+ + C + ++ + L
Sbjct: 250 NLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYL 309
Query: 392 NLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
+M+++G+ P T+ L K + ERI
Sbjct: 310 G---KMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERI 343
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 22/224 (9%)
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
S ++ LI G+CK A++ + + +GF PD +Y I+ C E + +
Sbjct: 321 SYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFN 380
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA- 330
E KG KP+VI ++ L I EA ++ +M + + ++ L+ L K
Sbjct: 381 EALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMG 440
Query: 331 --------VRFLI----------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
V+ +I +N +I + + NAL++ + ++ PD T+
Sbjct: 441 CVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYN 500
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
L C + +D V+ + M+ KG P T +L E L
Sbjct: 501 SLLNGLCKTSKFED---VMETYKTMVEKGCAPNLFTFNILLESL 541
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 86/179 (48%), Gaps = 15/179 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
T+N ++E+L + +K + E + ++E+ N V+ A++ L+D K
Sbjct: 533 TFNILLESLCRYRK---LDEALGLLEEMKNKSVNPDAVT----------FGTLIDGFCKN 579
Query: 192 NSVAHAYKVFLKFKDC--ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+ AY +F K ++ +S S+ ++++IH + + A+K +EM PDG +
Sbjct: 580 GDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYT 639
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
Y ++ +C+ + L EM E G PS+ T V++ L ++YEA + +M
Sbjct: 640 YRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRM 698
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/288 (19%), Positives = 113/288 (39%), Gaps = 38/288 (13%)
Query: 174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQK 233
++ D + L+D ++KR + + + +++ I G C+ + D A +
Sbjct: 228 KKGDVKECEKLLDKVIKRGVLPNLFT---------------YNLFIQGLCQRGELDGAVR 272
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
+ + + G PD ++Y I C+ F++ + L +M +G +P T ++
Sbjct: 273 MVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYC 332
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-----------------FILSKAVR--FL 334
K + A ++ + + D Y SLI L K ++ +
Sbjct: 333 KGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVI 392
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+YNT+I + A +L ++ E P+ +T + C + D L+
Sbjct: 393 LYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDAD---GLV 449
Query: 395 REMLSKGIVPQESTHKMLAEELEKK-SLGNAKERIDELLTHATEQRTF 441
+ M+SKG P T +L + + NA E +D +L + + +
Sbjct: 450 KVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVY 497
>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1084
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 4/245 (1%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D S ++ L + V A+ +F + K + I S + +LI +CK A+K
Sbjct: 459 DDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWF 518
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM G +P+ V+YT I Y + K D + M +GCKP+V+T T ++ KA
Sbjct: 519 DEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKA 578
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
QI +A ++Y +M+ D +D Y L + + Y ++ C + A +L
Sbjct: 579 GQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHEL 638
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ C+P+ + + C +++D V M E +G P T+ +
Sbjct: 639 LDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSE---RGYSPNLYTYSSFIDC 695
Query: 416 LEKKS 420
L K +
Sbjct: 696 LFKDN 700
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 19/211 (9%)
Query: 202 LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
L +C + + L+ G CK + A + + M HG P+ + Y I+ +C+
Sbjct: 606 LDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIG 665
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
+ +M E+G P++ T + + L K ++ LKV KM + C +
Sbjct: 666 KLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNV---- 721
Query: 322 SLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
+IY M+ C + A KL K+EE C P+ T+ +
Sbjct: 722 ------------VIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKS 769
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+++ L L R+M SKG P T+++L
Sbjct: 770 GKIEQ---CLELFRDMCSKGCAPNFITYRVL 797
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L+D L K N V A+++ +QI +D +I G+CK K AQ+ +M +
Sbjct: 620 GALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSE 679
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G+SP+ +Y+ FI+ ++ V L +M E C P+V+ T ++ L K + E
Sbjct: 680 RGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDE 739
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A K+ KM+ C + Y+++I K+ + L+L + +
Sbjct: 740 AYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKI----------------EQCLELFRDMC 783
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
C P+ T+ + CC + + +L+ M++
Sbjct: 784 SKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQ 819
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 128/323 (39%), Gaps = 40/323 (12%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELS--NGYVSLAAMSTVMRRLDTRAMSVLMDTL 188
E +N+++ A KS+ + ++L K++ + GY+ + + + S ++D +
Sbjct: 350 EIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLV 409
Query: 189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
K AY L + L+ C K D A K + EM GF PD
Sbjct: 410 EK------AYSEMLDLG--VVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDS 461
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+Y+ I C K +EM+ G PSV T TI++ + KA I +A K +++M
Sbjct: 462 TYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEM 521
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
C + Y++LI KA + + A +L + + + CKP+
Sbjct: 522 LHKGCTPNVVTYTALIHAYLKAKQMPV----------------ADELFEMMLLEGCKPNV 565
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV-------------PQESTHKMLAEE 415
T+ + C +++ + MR + + P T+ L +
Sbjct: 566 VTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDG 625
Query: 416 LEKKS-LGNAKERIDELLTHATE 437
L K + + A E +D +L H E
Sbjct: 626 LCKANRVKEAHELLDTMLAHGCE 648
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 115/294 (39%), Gaps = 45/294 (15%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
GY + TYNA+++ ++ K + + +E+ LS +V +D +S
Sbjct: 206 GYKPSQTTYNALIQVFLRADKLDTAYLVKREM--LSYAFV-----------MDRYTLSCF 252
Query: 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
+L K A+ + + +D + + ++ ++ G C+ + A + M
Sbjct: 253 AYSLCKGGKCREAFDLIDEAEDFVP-DTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCI 311
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P+ V+Y + R+ + L M +GC P+ ++HA K++ A K+
Sbjct: 312 PNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKL 371
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE--GNALKLRQKIEED 362
++KM C +L+YN I S C E+ + L L +K +
Sbjct: 372 FKKMIKCGCQPG----------------YLVYNIFIGSVCSNEEQPSSDILDLVEKAYSE 415
Query: 363 SC-------KPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
K + AR L C + ++ EM+ KG VP +ST+
Sbjct: 416 MLDLGVVLNKVNVSNFARCL---CGAGKFDQA---FKIICEMMGKGFVPDDSTY 463
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/214 (19%), Positives = 92/214 (42%), Gaps = 18/214 (8%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
++ GY TY++ ++ L K + L+ +++ ++ L N + T M
Sbjct: 678 SERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKM--LENSCTPNVVIYTEM-------- 727
Query: 182 SVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
+D L K AYK+ LK K C + + + +I G+ K+ K + + ++M
Sbjct: 728 ---VDGLCKIGKTDEAYKLMLKMEEKGC-NPNVVTYTAMIDGFGKSGKIEQCLELFRDMC 783
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
G +P+ ++Y I H C + L EM++ +++ ++ +++
Sbjct: 784 SKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGF--SQEFI 841
Query: 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
++ + +++ ++ + S Y LI KA R
Sbjct: 842 TSIGLLDELSENESVPVDSLYRILIDNYIKAGRL 875
>gi|297797043|ref|XP_002866406.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312241|gb|EFH42665.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 522
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 85/399 (21%), Positives = 164/399 (41%), Gaps = 69/399 (17%)
Query: 80 SHALSEDHETDVDKVSEILRKRYPSPDKVVEALK--------CFCFT-WAKTQTGYMHTP 130
SHA+S+ ++ P+PD +++ L F W + + + HT
Sbjct: 92 SHAISQRFNLSFSHIT-------PNPDLILQTLNLSPEAGRAALGFNEWLDSNSNFSHTD 144
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR---------------- 174
ET + V+ G+ K F M E++ + ++ +A+ ++R
Sbjct: 145 ETVSFFVDYFGRRKDFKGMLEIISKYKGIAGAKTLESAIDRLVRADRPKQVAAFFEKMEN 204
Query: 175 ----RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDY 230
+ D ++++++ L ++ + A K+ + I I D+LI GWC K D
Sbjct: 205 DYGLKRDRDSLTLVVKKLCEKRHASIAEKMVKNTANDIFPDENICDLLISGWCTAEKLDE 264
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIE---HYCREKD-FR---KVDYTLKEMQEKGCKPSVI 283
A + EM + GF +Y ++ CR+KD F+ +V+ L EM+ +G +
Sbjct: 265 ATRLAGEMSRGGFEIGTKAYNMILDCVCKLCRKKDPFKLQPEVEKVLLEMEFRGVPRNTE 324
Query: 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSA 343
T ++++ L K ++ EA+ ++ +M C D Y LI L +A R + MI
Sbjct: 325 TFNVLINNLCKIRRTEEAMTLFARMGEWGCQPDAETYLVLIRSLYQAARIGEGDEMIDKM 384
Query: 344 ---------------------CVRSEEGNALKLRQKIEEDSCKPDCETHARSL-KMCCHK 381
C +A+ + + ++ + CKP +T+ + KMC +
Sbjct: 385 KSAGYGEFLNKKEYYGFLKILCGIERLEHAMSVFKSMKANGCKPGIKTYDLLMGKMCANN 444
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ + L +E KGI +++ L+KK+
Sbjct: 445 QLTRAN----GLYKEAAKKGIAVSPKEYRVDPRFLKKKT 479
>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
Length = 244
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 91/213 (42%), Gaps = 22/213 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+++LI+G+CK + D A++ EM G +PD V+Y I C+ R+ K M
Sbjct: 32 YNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLIHGLCQLGRLREAQDLFKNMH 91
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
+ G P + +I++ L K + +A +++ M+S D Y+ L+
Sbjct: 92 KNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILVDAMCKSGNLK 151
Query: 325 ---------FILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
F+ IY T+I+ C AL+ + +EED C PD ++ +
Sbjct: 152 DARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEFSYNVII 211
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+ KD ++L+ EM +G + T
Sbjct: 212 RGFLQH---KDESRAVHLIGEMRDRGFIADVGT 241
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 19/191 (9%)
Query: 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290
A+K M G+ PD Y I YC+ K EM +G P +T ++H
Sbjct: 13 ARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLIH 72
Query: 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEG 350
L + ++ EA +++ M + L D Y+ ++ C + G
Sbjct: 73 GLCQLGRLREAQDLFKNMHKNGNLPD----------------LFAYSILLDGLCKQGYLG 116
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
A +L + ++ S KPD + + C +KD L E+ KG+ P +
Sbjct: 117 KAFRLFRAMQSSSLKPDLVMYNILVDAMCKSGNLKDAR---ELFSELFVKGLQPNVQIYT 173
Query: 411 MLAEELEKKSL 421
+ L K+ L
Sbjct: 174 TIINGLCKEGL 184
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 84/194 (43%), Gaps = 18/194 (9%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP+ TYN ++ L + + +L K + + NG + D A S+L+D
Sbjct: 61 TPDKVTYNTLIHGLCQLGRLREAQDLFKNMHK--NGNLP-----------DLFAYSILLD 107
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
L K+ + A+++F + SL + +++L+ CK+ A++ E+F G
Sbjct: 108 GLCKQGYLGKAFRLFRAMQSS-SLKPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQ 166
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P+ YT I C+E + + M+E GC P + +++ + K A+ +
Sbjct: 167 PNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEFSYNVIIRGFLQHKDESRAVHL 226
Query: 305 YEKMKSDDCLTDTS 318
+M+ + D
Sbjct: 227 IGEMRDRGFIADVG 240
>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 107/243 (44%), Gaps = 26/243 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G K KS+ A K+M + G P+ V Y+ I+ CRE + L EM
Sbjct: 366 YSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMV 425
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---------- 324
KGC P+ T + ++ K +A++V+++M ++C+ + YS LI
Sbjct: 426 NKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLR 485
Query: 325 -------FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKI--EEDSCKPDCETHAR 373
+L + +R + Y++MI C LKL ++ +E +PD T+
Sbjct: 486 EAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNI 545
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK--SLGNAKERIDEL 431
L+ C + + ++L+ ML +G P T + L +K + +E +DEL
Sbjct: 546 LLRALCKQNSISHA---IDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLDEL 602
Query: 432 LTH 434
+
Sbjct: 603 VVR 605
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 103/230 (44%), Gaps = 24/230 (10%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
L+ G CK + D A + EM G P V++ I C++ D +V + M KG
Sbjct: 229 LMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKG 288
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL--- 334
C P+ +T +++ L ++ +A+ + ++M + C+ + Y +LI L K R +
Sbjct: 289 CVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGV 348
Query: 335 ----------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
Y+T+IS + A+ L +K+ E C+P+ ++ +
Sbjct: 349 HLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGL 408
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
C + ++ + +L EM++KG P T+ L + K GN+++ I
Sbjct: 409 CREGKLDEAKEILC---EMVNKGCTPNAFTYSSLIKGFFKT--GNSQKAI 453
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/329 (19%), Positives = 130/329 (39%), Gaps = 42/329 (12%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
+SE +R S + + + F A Y T+ +++E S FG ++++
Sbjct: 44 ISECPPRRVVSVSRSFLQSETYIFKSASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVF 103
Query: 154 KEIDE----------------LSNGYVSLAAMSTVMRRLD-------TRAMSVLMDTLVK 190
+ ++ A+ R +D R+ + +++ +++
Sbjct: 104 DRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQ 163
Query: 191 RNSVAHA---YKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
A Y+ + K IS + F+++I CK D A + +EM PD
Sbjct: 164 EGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDV 223
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+Y ++ C+E + L EMQ +GC PS +T ++++ L K + K+ +
Sbjct: 224 FTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDN 283
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
M C+ + + YNT+I+ C++ + A+ L ++ C P+
Sbjct: 284 MFLKGCVPNE----------------VTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPN 327
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMRE 396
T+ + + R DG+ +L+ + E
Sbjct: 328 DVTYGTLINGLVKQGRSVDGVHLLSSLEE 356
>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 126/286 (44%), Gaps = 44/286 (15%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD--TRAMSVLMDTLV 189
T+NA+++A K K +L +E+ + R +D T ++L++
Sbjct: 330 TFNALIDAFFKEGKLVEAEKLHEEM---------------IQRSIDPDTITYNLLINGFC 374
Query: 190 KRNSVAHAYKVFLKF---KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
N + A ++F KF KDC+ + Q ++ LI+G+CK ++ + + +EM Q G +
Sbjct: 375 MHNRLDEAKQMF-KFMVSKDCLP-NIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGN 432
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+YT I+ + + D K+M ++T +I++H L ++ AL +++
Sbjct: 433 TVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFK 492
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
++ + + IYNTMI C + G A L + S KP
Sbjct: 493 YLQKSE----------------MELNIFIYNTMIEGMCKAGKVGEAWDLFCSL---SIKP 533
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
D T+ + C K+ +++ +L R+M G +P T+ L
Sbjct: 534 DVVTYNTMISGLCSKRLLQEAD---DLFRKMKEDGTLPNSGTYNTL 576
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 101/239 (42%), Gaps = 20/239 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D +++ L KR + A + K + I + IF+ +I CK R + A
Sbjct: 222 DLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLF 281
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM G P+ V+Y I C + L M EK P+V+T ++ A K
Sbjct: 282 TEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKE 341
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ EA K++E+M DT + YN +I+ C+ + A ++
Sbjct: 342 GKLVEAEKLHEEMIQRSIDPDT----------------ITYNLLINGFCMHNRLDEAKQM 385
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ + C P+ +T+ + C KR++DG + L REM +G+V T+ + +
Sbjct: 386 FKFMVSKDCLPNIQTYNTLINGFCKCKRVEDG---VELFREMSQRGLVGNTVTYTTIIQ 441
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 107/264 (40%), Gaps = 33/264 (12%)
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAM 235
++V+ N + A KF+ ISL Q+ + + I+ +C+ + A +
Sbjct: 82 SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVL 141
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+M + G+ PD V+ + + YC K + +M E G KP T T ++H L
Sbjct: 142 AKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLH 201
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK---------------AVRF----LIY 336
+ EA+ + ++M C D Y +++ L K A R +I+
Sbjct: 202 NKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIF 261
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT+I S C A+ L ++E +P+ T+ + C+ R D L+
Sbjct: 262 NTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDAS---RLLSN 318
Query: 397 MLSKGIVPQESTHKMLAEELEKKS 420
ML K I P T L + K+
Sbjct: 319 MLEKKINPNVVTFNALIDAFFKEG 342
>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
Length = 817
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 138/325 (42%), Gaps = 49/325 (15%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTV----------- 172
G T TYN +++ KS + + L+KE+ LS G+ V+ + ++V
Sbjct: 387 GLSLTSSTYNTLIKGYCKSGQADIAERLLKEM--LSIGFNVNQGSFTSVICLLCSHHMFD 444
Query: 173 ----------MRRLDTRA--MSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLI 219
+R + ++ L+ L K + A +++LKF + + ++ + L+
Sbjct: 445 SALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALL 504
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
HG C+ K + + KE+ GF D VSY I C K + + EM +KG K
Sbjct: 505 HGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLK 564
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR------- 332
P T +I++ L ++ EA++ + K + + D YS +I KA R
Sbjct: 565 PDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKL 624
Query: 333 ------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
++YN +I + C AL+LR+ ++ P+ T+ +K
Sbjct: 625 FDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSI 684
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQ 405
R+++ L L+ EM +G+ P
Sbjct: 685 ISRVEEAKL---LLEEMRMEGLEPN 706
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 139/305 (45%), Gaps = 33/305 (10%)
Query: 113 KCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
+ F F + G T TY+ +V+ L K+K+ G + ++KE+ E G+
Sbjct: 305 EAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTE--KGFPP------- 355
Query: 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYA 231
+ + L+D+L++ S+ A ++ L +SL+S ++ LI G+CK+ ++D A
Sbjct: 356 ----NVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIA 411
Query: 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
++ +KEM GF+ + S+T I C F + EM + P T ++
Sbjct: 412 ERLLKEMLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISG 471
Query: 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN 351
L K + +A++++ K + L DT ++L+ L +A + EEG
Sbjct: 472 LCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKL--------------EEG- 516
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
+++++I D ++ + CC K++ + + M EM+ KG+ P T+ +
Sbjct: 517 -FRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFM---FMDEMVKKGLKPDNYTYSI 572
Query: 412 LAEEL 416
L L
Sbjct: 573 LIRGL 577
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 127/320 (39%), Gaps = 51/320 (15%)
Query: 119 WAK-TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV-------SLAAMS 170
W K G++ +T NA++ L ++ K + + KEI L G+V +L +
Sbjct: 485 WLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEI--LGRGFVMDRVSYNTLISGC 542
Query: 171 TVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS------------------ 212
++LD M MD +VK+ Y + + ++++
Sbjct: 543 CGNKKLDEAFM--FMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIP 600
Query: 213 --QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
+ V+I G CK +++ QK EM + P+ V Y I YCR
Sbjct: 601 DVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELR 660
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
++M+ KG P+ T T ++ + ++ EA + E+M+ + + Y++LI K
Sbjct: 661 EDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGK- 719
Query: 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
M+ C L +++ + P+ T+ + + + +
Sbjct: 720 -----LGQMVKVEC----------LLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRL 764
Query: 391 LNLMREMLSKGIVPQESTHK 410
L+ MRE KGIVP T+K
Sbjct: 765 LHEMRE---KGIVPDSITYK 781
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 97/220 (44%), Gaps = 19/220 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
++L+ +LV+ + F +S +F I+ +CK K + A + +M +
Sbjct: 222 NILLTSLVRATEFQKCCEAFHVVCKGVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEA 281
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G P+ V+Y I+ + + ++M E+G +P++IT +I++ L KAK+I +A
Sbjct: 282 GVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDA 341
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
V ++M T+ F ++I +YN +I S A++++ +
Sbjct: 342 YCVLKEM------TEKGFPPNVI----------VYNNLIDSLIEAGSLNKAIEIKDLMVS 385
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
T+ +K C + + L++EMLS G
Sbjct: 386 KGLSLTSSTYNTLIKGYCKSGQAD---IAERLLKEMLSIG 422
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS +S + LI G + + A+ ++EM G P+ YT I+ Y + KV+
Sbjct: 668 ISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVE 727
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
L+EM K P+ IT T+++ + + EA ++ +M+ + D+ Y I+
Sbjct: 728 CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIY 785
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 72/149 (48%), Gaps = 1/149 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D + ++ K V A ++F K ++ + + + ++ +I G + + D A
Sbjct: 251 DVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFK 310
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++M + G P ++Y+ ++ + K LKEM EKG P+VI ++ +L +A
Sbjct: 311 EKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEA 370
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
+ +A+++ + M S +S Y++LI
Sbjct: 371 GSLNKAIEIKDLMVSKGLSLTSSTYNTLI 399
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 87/224 (38%), Gaps = 24/224 (10%)
Query: 216 DVLIHGWCKTRKSD---YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
D+LI +C K D A + G P + + R +F+K
Sbjct: 184 DLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRATEFQKCCEAF-H 242
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
+ KG P V T ++A K ++ EA++++ KM+ + +
Sbjct: 243 VVCKGVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNV--------------- 287
Query: 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392
+ YNT+I + A ++K+ E +P T++ +K KR+ D VL
Sbjct: 288 -VTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVL- 345
Query: 393 LMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
+EM KG P + L + L E SL A E D +++
Sbjct: 346 --KEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKG 387
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G+ K + + ++EM P+ ++YT I Y R+ + + L EM+
Sbjct: 710 YTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMR 769
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALK 303
EKG P IT ++ K + +A K
Sbjct: 770 EKGIVPDSITYKEFIYGYLKQGGVLQAFK 798
>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Glycine max]
Length = 631
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 62/370 (16%)
Query: 90 DVDKVSEILRKRYPSPDKVVEALKCFC--------FTWAKTQTGYMHTPETYNAMVEALG 141
D +K E+L+ + P V E LK F WA + + H TY A++ L
Sbjct: 71 DAEKALEVLKLKV-DPRLVREILKIDVEVSVKIQFFKWAGKRRNFEHDSTTYMALIRCLD 129
Query: 142 KSKKFGLMWELVKEIDELSNGYVSLAA--MSTVMRRLD-----TRAMSVLMDTLVKR--- 191
+ + FG +W K I ++ G ++A +S ++R L RA+SV ++
Sbjct: 130 EHRMFGEVW---KTIQDMVKGSCAMAPAELSEIVRILGKAKMVNRALSVFYQVKGRKCRP 186
Query: 192 -----NSV-------AHAYKVFLKFKDCIS-----LSSQIFDVLIHGWCKTRKSDYAQKA 234
NS+ H KV + + S + + LI + K + D A +
Sbjct: 187 TASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISAFAKLNRDDSAIRL 246
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
EM ++G P YT + Y + + +KEM+ + C +V T T ++ L K
Sbjct: 247 FDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELIRGLGK 306
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------------------AVRFLI 335
+ ++ +A Y+ M D C D ++LI IL + A +
Sbjct: 307 SGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVVT 366
Query: 336 YNTMISSAC-VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YNT+I S ++ A +++++D P T++ + C R++ +L L+
Sbjct: 367 YNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALL---LL 423
Query: 395 REMLSKGIVP 404
EM KG P
Sbjct: 424 EEMDEKGFPP 433
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 20/169 (11%)
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
KD I SS + +LI G+CKT + + A ++EM + GF P +Y I K +
Sbjct: 393 KDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYD 452
Query: 265 KVDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+ +E++E GC + + ++ H K ++ EA+ ++ +MK C D Y++L
Sbjct: 453 VANELFQELKENCGCSSARVYAVMIKH-FGKCGRLNEAINLFNEMKKLGCTPDVYAYNAL 511
Query: 324 IFILSKAVRFLIYNTMISSACVRSEEGN-ALKLRQKIEEDSCKPDCETH 371
+ + VR+E + A L + +EE+ C PD +H
Sbjct: 512 M-----------------TGMVRAERMDEAFSLFRTMEENGCTPDINSH 543
>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
Length = 757
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 111/267 (41%), Gaps = 23/267 (8%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQK 233
RLDT + LM L + V A ++ L + + ++ L+ G C T + D A K
Sbjct: 444 RLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAK 503
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
+ + G PD V+Y + YC+ + +EM KG P V+T ++H L
Sbjct: 504 LLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLF 563
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
+ + EA ++Y M + T + Y+ YN +I+ C + A
Sbjct: 564 QTGRFSEAKELYLSMINSR--TQMNIYT--------------YNIIINGLCKNNFVDEAF 607
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
K+ + + D T + R +D M +L + + G+VP T+ ++A
Sbjct: 608 KMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAM---DLFATISAYGLVPDVETYCLIA 664
Query: 414 EELEKKSLGNAKERIDELLTHATEQRT 440
E L K+ + E +DEL + E T
Sbjct: 665 ENLIKEG---SLEELDELFSAMEENGT 688
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 89/448 (19%), Positives = 164/448 (36%), Gaps = 100/448 (22%)
Query: 91 VDKVSEILRKRYP----SPDKVVEA--LKCFC-----------FTWAKTQTGYMHTPE-- 131
VD+ ++IL +R P +PD + LK FC + HTP
Sbjct: 144 VDEATDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVV 203
Query: 132 TYNAMVEALGKSKKF----GLMWELVKEIDELSN--------GYVSLAAMSTVMRRL--- 176
TY +++ L K++ G+ ++ + +N GY+S+ V++ L
Sbjct: 204 TYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEM 263
Query: 177 -------DTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKS 228
D +VL+D L K A +F + I + I+ +L+HG+
Sbjct: 264 STHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSL 323
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
+ M +G SPD + Y ++ + + +M+++ P+++T +
Sbjct: 324 SEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGAL 383
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF-----------------ILSKAV 331
+ AL K ++ +A+ + +M + D +SSL++ +L + +
Sbjct: 384 IDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGI 443
Query: 332 RF-------------------------------------LIYNTMISSACVRSEEGNALK 354
R + YNT++ C+ A K
Sbjct: 444 RLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAK 503
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
L I KPD T+ L C +R+ D +L REML KG+ P T+ +
Sbjct: 504 LLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAY---SLFREMLMKGLTPDVVTYNTILH 560
Query: 415 EL-EKKSLGNAKERIDELLTHATEQRTF 441
L + AKE ++ T+ +
Sbjct: 561 GLFQTGRFSEAKELYLSMINSRTQMNIY 588
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 22/208 (10%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
TP+ TYN ++ L ++ +F EL Y+S+ T M + +++++
Sbjct: 549 TPDVVTYNTILHGLFQTGRFSEAKEL----------YLSMINSRTQM---NIYTYNIIIN 595
Query: 187 TLVKRNSVAHAYKVF--LKFKDCISLSSQIF--DVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L K N V A+K+F L KD L IF +++I K + + A + +G
Sbjct: 596 GLCKNNFVDEAFKMFHSLCSKD---LQLDIFTANIMIGALLKGGRKEDAMDLFATISAYG 652
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302
PD +Y E+ +E ++D M+E G P+ ++ L I A
Sbjct: 653 LVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINRAG 712
Query: 303 KVYEKMKSDDCLTDTSFYSSLIFILSKA 330
K+ + + S S LI I S+
Sbjct: 713 AYLSKLDEKNFSLEASTTSMLISIYSRG 740
>gi|302814999|ref|XP_002989182.1| hypothetical protein SELMODRAFT_129427 [Selaginella moellendorffii]
gi|300143082|gb|EFJ09776.1| hypothetical protein SELMODRAFT_129427 [Selaginella moellendorffii]
Length = 614
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 145/336 (43%), Gaps = 50/336 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE-------------LSNGYV----SLAAMSTV-- 172
T+N M+ L K+ K G LV+ +++ + +G+ S A+S
Sbjct: 256 TFNIMIHGLCKANKVGEADALVRRMEDECGVAPDEFTFNTIIDGHFKAGDSKGALSLFKE 315
Query: 173 MRRLDTRAMSVLMDTLV----KRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS 228
M RL SV ++T+V K V A + + +++V+I + K +
Sbjct: 316 MARLGRCRCSVTLNTVVTGLCKAGEVDRAVTLVRDSASARQATVFMYNVVIDKFAKLGRF 375
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM-QEKGCKPSVITCTI 287
+ +++ +EM + G PD V++T + C+++ + +++M + KGC + + +
Sbjct: 376 EASKQLFQEMSRFGCHPDSVTFTILVSESCKQRRTHEALELVEQMTKNKGCSWTTLPFNM 435
Query: 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR------FLIYNTMIS 341
V++AL K+ ++ A KV+ MK D Y++L+ A R + ++ ++
Sbjct: 436 VLNALAKSGEMEAAGKVHRSMKVAGIECDLVTYNTLLDGYFGAGRARSGDGYRVFGELLH 495
Query: 342 SACV-----------------RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
S C R EE A + E C PD THA ++ CC ++ +
Sbjct: 496 SGCAPDTLSFNALLGCLCCDGRLEEAVAKFWGEMRERRECWPDAVTHALLVRQCCKQRNI 555
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ L ++ EML +G VP ML ++ S
Sbjct: 556 E---LACRIVDEMLHRGFVPTPGIASMLVNLIQSGS 588
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 18/185 (9%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L+ L K HA VF K K S+S ++++I K +++ A + +EM
Sbjct: 122 LIGGLCKVGKYDHAMAVFRKMKLPSSMS---YNIVIAACVKRGRNEAAVELFREMKVKKR 178
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD ++ I+ + F++ + EM C P+ +T +++H L KAK+ EA
Sbjct: 179 VPDIFTFNTVIQSLSKAGKFKEALDIVDEMVWLQCSPNELTFGLLVHGLCKAKRALEAES 238
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED- 362
V E M + C+ D + + +N MI C ++ G A L +++E++
Sbjct: 239 VLEVMDTVGCVPDPNLRT--------------FNIMIHGLCKANKVGEADALVRRMEDEC 284
Query: 363 SCKPD 367
PD
Sbjct: 285 GVAPD 289
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 30/178 (16%)
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332
M +KG P +TC ++ L K ++ A+K+YEKM D Y+ L+ L KA R
Sbjct: 35 MMDKGPYPDTVTCNSLLDGLFKVNKVEHAMKLYEKMSRSFVKADAFTYNILLHGLCKAGR 94
Query: 333 F---------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
L+Y +I C + +A+ + +K++ P ++
Sbjct: 95 IQEACQKLSAALRDREAPVRHELLYEALIGGLCKVGKYDHAMAVFRKMK----LPSSMSY 150
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429
+ C + R + + L REM K VP T + + L K G KE +D
Sbjct: 151 NIVIAACVKRGRNE---AAVELFREMKVKKRVPDIFTFNTVIQSLSKA--GKFKEALD 203
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 97/244 (39%), Gaps = 26/244 (10%)
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
SL + ++++ CK D A + + M G PD V+ ++ + KV++
Sbjct: 6 SLDVRTCNIMVDSLCKGGLVDDAAELVHGMMDKGPYPDTVTCNSLLDGLFK---VNKVEH 62
Query: 269 TLK---EMQEKGCKPSVITCTIVMHALEKAKQIYEALK-----------------VYEKM 308
+K +M K T I++H L KA +I EA + +YE +
Sbjct: 63 AMKLYEKMSRSFVKADAFTYNILLHGLCKAGRIQEACQKLSAALRDREAPVRHELLYEAL 122
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
C ++ +F K + YN +I++ R A++L ++++ PD
Sbjct: 123 IGGLCKVGKYDHAMAVFRKMKLPSSMSYNIVIAACVKRGRNEAAVELFREMKVKKRVPDI 182
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
T ++ + K+ L+++ EM+ P E T +L L K E +
Sbjct: 183 FTFNTVIQSLSKAGKFKE---ALDIVDEMVWLQCSPNELTFGLLVHGLCKAKRALEAESV 239
Query: 429 DELL 432
E++
Sbjct: 240 LEVM 243
>gi|15238810|ref|NP_197340.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635760|sp|Q94JX6.2|PP391_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g18390, mitochondrial; Flags: Precursor
gi|332005166|gb|AED92549.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 459
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/358 (20%), Positives = 138/358 (38%), Gaps = 46/358 (12%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELS---------------- 160
F WA++ Y T Y + ++L KK+ MW+++K++ +LS
Sbjct: 98 FNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYG 157
Query: 161 -NGYVSLAA--MSTVMRRLDTR----AMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSS 212
NG+V A + V + L + + L+ L AY + + + +
Sbjct: 158 KNGHVDQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRMIRKGLKPDK 217
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
+ + +L++GWC K AQ+ + EM + GF+P IE + +
Sbjct: 218 RTYAILVNGWCSAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGLLNAGYLESAKEMVSK 277
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK--- 329
M + G P + T I++ A+ K+ ++ +++Y D Y +LI +SK
Sbjct: 278 MTKGGFVPDIQTFNILIEAISKSGEVEFCIEMYYTACKLGLCVDIDTYKTLIPAVSKIGK 337
Query: 330 ---AVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
A R L +Y +I C +A ++ + P+ +
Sbjct: 338 IDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSFFSDMKVKAHPPNRPVYTM 397
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431
+ MC + D N + EM G+VP M+ + L+ + RI++L
Sbjct: 398 LITMCGRGGKFVDAA---NYLVEMTEMGLVPISRCFDMVTDGLKNGGKHDLAMRIEQL 452
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 1164
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 121/273 (44%), Gaps = 28/273 (10%)
Query: 192 NSVAHAYKVFLKFKD---CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
N A A VF +F + C +++S ++++IH C+ + + A + M G++PD +
Sbjct: 648 NKTATAIIVFREFPEVGVCWNVAS--YNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVI 705
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
SY+ I YCR + KV +++M++KG KP+ T ++ L + ++ EA + + +M
Sbjct: 706 SYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEM 765
Query: 309 KSDDCLTDTSFYSSLIFILSK------AVRF-------------LIYNTMISSACVRSEE 349
L DT Y++L+ K A +F L Y +IS C +
Sbjct: 766 IGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 825
Query: 350 GNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTH 409
A KL ++ +PD T + C +KD V N M+ G P T+
Sbjct: 826 VEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHN---HMIQAGCSPNVVTY 882
Query: 410 KMLAEELEKKS-LGNAKERIDELLTHATEQRTF 441
L + L K+ L +A E + E+ + F
Sbjct: 883 TTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 915
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 105/241 (43%), Gaps = 22/241 (9%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKA 234
D + ++ + + A K+F + C L I F L++G+CK A +
Sbjct: 808 DVLTYTAIISGFCQIGDMVEAGKLFHEML-CRGLEPDIITFTELMNGYCKAGHIKDAFRV 866
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
M Q G SP+ V+YT I+ C+E D + L EM + G +P++ T +++ L K
Sbjct: 867 HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCK 926
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354
+ I EA+K+ + ++ DT + Y T++ + C E A +
Sbjct: 927 SGNIEEAVKLVGEFEAAGLNADT----------------VTYTTLMDAYCKSGEMDKAQE 970
Query: 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ ++ +P T + C ++DG +LN ML+KGI P +T L +
Sbjct: 971 ILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNW---MLAKGIAPNATTFNCLVK 1027
Query: 415 E 415
+
Sbjct: 1028 Q 1028
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 128/293 (43%), Gaps = 45/293 (15%)
Query: 158 ELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC 207
EL NGY + R + + L+D L K + A ++ +
Sbjct: 849 ELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK- 907
Query: 208 ISLSSQIF--DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
I L IF + +++G CK+ + A K + E G + D V+YT ++ YC+ + K
Sbjct: 908 IGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDK 967
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
L EM KG +P+++T ++M+ ++ L+ EK+ L +
Sbjct: 968 AQEILTEMLGKGLQPTIVTFNVLMNGF----CLHGMLEDGEKL--------------LNW 1009
Query: 326 ILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSC----KPDCETHARSLKMCC 379
+L+K + +N ++ C+R N LK I +D C +PD +T+ +K C
Sbjct: 1010 MLAKGIAPNATTFNCLVKQYCIR----NNLKAATAIYKDMCSRGVEPDGKTYENLVKGHC 1065
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE-LEKKSLGNAKERIDEL 431
+ + MK+ L +EM KG ST+ +L + ++K A+E D++
Sbjct: 1066 NARNMKEAWF---LFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQM 1115
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 87/218 (39%), Gaps = 22/218 (10%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ L+ G+CK A K EM +PD ++YT I +C+ D + EM
Sbjct: 776 VYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM 835
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK---- 329
+G +P +IT T +M+ KA I +A +V+ M C + Y++LI L K
Sbjct: 836 LCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL 895
Query: 330 ---------------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
YN++++ C A+KL + E D T+
Sbjct: 896 DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 955
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C M +L EML KG+ P T +L
Sbjct: 956 MDAYCKSGEMDKAQEILT---EMLGKGLQPTIVTFNVL 990
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 90/204 (44%), Gaps = 14/204 (6%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN++V L KS G + E VK + E A ++ DT + LMD K
Sbjct: 916 TYNSIVNGLCKS---GNIEEAVKLVGEFEA-----AGLNA-----DTVTYTTLMDAYCKS 962
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A ++ + + + F+VL++G+C + +K + M G +P+ ++
Sbjct: 963 GEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTF 1022
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
C ++ YC + + K+M +G +P T ++ A+ + EA ++++MK
Sbjct: 1023 NCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKG 1082
Query: 311 DDCLTDTSFYSSLIFILSKAVRFL 334
S YS LI K +F+
Sbjct: 1083 KGFSVSVSTYSVLIKGFFKRKKFV 1106
>gi|115436834|ref|NP_001043148.1| Os01g0506100 [Oryza sativa Japonica Group]
gi|56201661|dbj|BAD73125.1| leaf protein -like [Oryza sativa Japonica Group]
gi|113532679|dbj|BAF05062.1| Os01g0506100 [Oryza sativa Japonica Group]
gi|215717162|dbj|BAG95525.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 541
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 22/219 (10%)
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
+ +++L+HGW + + D K EM G P V+Y IE C ++ + L E
Sbjct: 184 RAYNILLHGWSRAGRLDKVGKLWAEMRLAGVRPTVVTYGTLIEGLCVKRRPDQAIALLDE 243
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------ 326
M+E+G + +++TC +++AL +A + +A KV EK + S ++SL+
Sbjct: 244 MREEGIEANLLTCNPIVYALAQAGRFQDAHKVLEKFPLYGVAPNISTFNSLVMGYCKHGD 303
Query: 327 LSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
L+ A L YN + S+ + + K+ + PD T+
Sbjct: 304 LAGASSVLKVMTERGISPTTRTYNYFFMTFAKNSDVESGMNFYSKMIGNGYSPDQLTYVL 363
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+KM R++ LV+ +++EM + G P +T ML
Sbjct: 364 LVKMLSRANRLE---LVVQMIQEMRTHGFEPDLATSTML 399
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/247 (19%), Positives = 89/247 (36%), Gaps = 55/247 (22%)
Query: 187 TLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
L + A+KV KF ++ + F+ L+ G+CK A +K M + G SP
Sbjct: 262 ALAQAGRFQDAHKVLEKFPLYGVAPNISTFNSLVMGYCKHGDLAGASSVLKVMTERGISP 321
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
+Y F + + D + + Y
Sbjct: 322 TTRTYNYFFMTFAKNSD-----------------------------------VESGMNFY 346
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
KM + D Y L+ +LS+A R + MI Q++ +
Sbjct: 347 SKMIGNGYSPDQLTYVLLVKMLSRANRLELVVQMI----------------QEMRTHGFE 390
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAK 425
PD T + + C + + ++ +M +GIVPQ T++ L EL++ L +
Sbjct: 391 PDLATSTMLIHLLCRRHQFEEACAEFE---DMFKRGIVPQYITYQKLMRELKRLGLVHLI 447
Query: 426 ERIDELL 432
+++ L+
Sbjct: 448 QKLTNLM 454
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 11/169 (6%)
Query: 153 VKEIDELSNGYV---SLAAMSTVMRRLDTRAMS-------VLMDTLVKRNSVAHAYKVFL 202
+ + L GY LA S+V++ + R +S T K + V +
Sbjct: 288 ISTFNSLVMGYCKHGDLAGASSVLKVMTERGISPTTRTYNYFFMTFAKNSDVESGMNFYS 347
Query: 203 K-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
K + S + +L+ + + + + ++EM HGF PD + T I CR
Sbjct: 348 KMIGNGYSPDQLTYVLLVKMLSRANRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCRRH 407
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
F + ++M ++G P IT +M L++ ++ K+ M+S
Sbjct: 408 QFEEACAEFEDMFKRGIVPQYITYQKLMRELKRLGLVHLIQKLTNLMRS 456
>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
Length = 442
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 121/287 (42%), Gaps = 33/287 (11%)
Query: 163 YVSLAAMSTVMRRL----DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ----I 214
Y ++ ++ST M + +++L+++ N V A+ V K + L Q
Sbjct: 61 YSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKI---LKLGHQPDPTT 117
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F LI G C K A +M GF P+ V+Y I C+ + L+ M+
Sbjct: 118 FTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSME 177
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF--------- 325
+ C+P V+ T ++ +L K +Q+ EA ++ +M D Y+SL+
Sbjct: 178 QGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWK 237
Query: 326 ----ILSKAVR------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+L++ V +I++T++ + C + A ++ + + +PD T+ +
Sbjct: 238 HVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLM 297
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLG 422
C + M + + V ++ M+ KG P ++ L +K G
Sbjct: 298 DGHCLQSEMDEAVKVFDM---MVRKGFAPDVISYTTLINAGKKDGGG 341
>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
Length = 577
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 127/308 (41%), Gaps = 46/308 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN++++ L K + WE VK + L+ M + + S+L+D L K
Sbjct: 240 TYNSLIDGLCKLGQ----WEKVKTL---------LSEMVNLNINPNVHTFSILIDGLCKE 286
Query: 192 NSVAHAYKVFLKF------KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
V A +V D I+ S+ ++ G+C + D A++ + G P
Sbjct: 287 GKVEDADEVMRHMIEKGVEPDIITYSA-----IMDGYCLRGQVDRARRVFNVLRDKGIKP 341
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
+ SY+ I YC++K+ K E+ +KG KP +T + ++H L + +I +A K++
Sbjct: 342 NIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIF 401
Query: 306 EKMKSDDCLTDTSFYSSLIF-------------ILSKAVR------FLIYNTMISSACVR 346
++M D +S+L+F + SK R Y +I+ C
Sbjct: 402 DEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKN 461
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406
A + +K+ PD T+ + C + + V ++R+M G
Sbjct: 462 DRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDE---VKGILRKMEDNGCPANN 518
Query: 407 STHKMLAE 414
T+ ++ +
Sbjct: 519 ITYNVIMQ 526
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ V+I+G CK + A +++ G PD +Y I +CRE F +V L++M+
Sbjct: 451 YTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKME 510
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ GC + IT ++M ++ +I E + ++M D + LI +L
Sbjct: 511 DNGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLINVL 563
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 117/273 (42%), Gaps = 25/273 (9%)
Query: 181 MSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
++++ ++ R+ + A+ V + K I + F+ L+ G K A K++
Sbjct: 100 LNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLV 159
Query: 240 QHGF-SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
+ P+ V Y + + K L+ M++ KP V T +IV+ AL K +
Sbjct: 160 REKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINL 219
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAVRFLI------YNTM 339
A+ + +MK + + Y+SLI +LS+ V I ++ +
Sbjct: 220 DAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSIL 279
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I C + +A ++ + + E +PD T++ + C + ++ V N++R+
Sbjct: 280 IDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRD--- 336
Query: 400 KGIVPQESTHKMLAEEL-EKKSLGNAKERIDEL 431
KGI P ++ +L +KK+L A + E+
Sbjct: 337 KGIKPNIFSYSILINGYCKKKNLAKAMQLFGEI 369
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMF 239
+V+++ L K + V A+ +F K I L + ++V+I G+C+ D + +++M
Sbjct: 452 TVVINGLCKNDRVREAHAIFEKLPS-IGLIPDVRTYNVMITGFCREGLFDEVKGILRKME 510
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299
+G + ++Y ++ + R ++ +KEM +G T ++++ L++ I
Sbjct: 511 DNGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLINVLKENPSIV 570
Query: 300 EAL 302
+ +
Sbjct: 571 DMI 573
>gi|414872586|tpg|DAA51143.1| TPA: empty pericarp4 [Zea mays]
Length = 595
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 108/251 (43%), Gaps = 22/251 (8%)
Query: 190 KRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
K V A ++ + + + LS + + L++GWC+ K D A+ + M + D V
Sbjct: 167 KAGHVLTAEQLVEELQPRLPLSLRHYTALLYGWCRQGKLDEAKHVLARMKAADVALDVVV 226
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
+ + + E F +M+++GC P+ ++ T ++ L ++ EA++V+ +M+
Sbjct: 227 FNTLLAGFVAEGRFEDAFELAGQMEQRGCPPNAVSYTTLIQGLGARGRVDEAMRVFVEMR 286
Query: 310 SDDCLTDTSFYSSLIFILSKAVR------FL-------------IYNTMISSACVRSEEG 350
C D Y +L+ KA + FL +Y+ + + +
Sbjct: 287 RKGCAPDAVTYGTLVNTFCKAGKISQGYEFLDAMSRDGLRVDAAVYHGFFVAHEKKEQLE 346
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
L+L +++ E C PD + + +++ C K M + N EM S G+ P T
Sbjct: 347 ECLELMERMRECRCPPDLKIYNVVIRLACRLGETKQAMTLWN---EMESAGLSPVVDTFA 403
Query: 411 MLAEELEKKSL 421
++ L + L
Sbjct: 404 IVVSGLVGQGL 414
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 83/392 (21%), Positives = 143/392 (36%), Gaps = 63/392 (16%)
Query: 63 LASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKT 122
L W KL+E + + + D DV V L + + + +A F
Sbjct: 196 LYGWCRQGKLDEAKHVLARMKAADVALDV-VVFNTLLAGFVAEGRFEDA---FELAGQME 251
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR----LDT 178
Q G +Y +++ LG + +DE +V MRR D
Sbjct: 252 QRGCPPNAVSYTTLIQGLGARGR----------VDEAMRVFVE-------MRRKGCAPDA 294
Query: 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLI-HGWC----KTRKSDYAQK 233
L++T K ++ Y+ F D +S D + HG+ K + + +
Sbjct: 295 VTYGTLVNTFCKAGKISQGYE----FLDAMSRDGLRVDAAVYHGFFVAHEKKEQLEECLE 350
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
M+ M + PD Y I CR + ++ EM+ G P V T IV+ L
Sbjct: 351 LMERMRECRCPPDLKIYNVVIRLACRLGETKQAMTLWNEMESAGLSPVVDTFAIVVSGLV 410
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTM--ISSACVRSEEGN 351
+ EA ++ M +F++ + Y + + +A VR E+
Sbjct: 411 GQGLLIEACSYFKDMVGRG-----------LFVVPQ------YGVLKDLLNALVRDEK-- 451
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCH----KKRMKDGMLVLNLMREMLSKGIVPQES 407
L+L + + + CE + + + H KK +K+ L +ML G++PQ
Sbjct: 452 -LELAKDVWKCIVSKGCELNVSAWTIWIHALFAKKHVKEACLY---CLDMLEAGLMPQPD 507
Query: 408 THKMLAEELEKKSLGNAKERIDELLTHATEQR 439
T L + L+K I E + E+R
Sbjct: 508 TFAKLMKGLKKLYNRQIAAEITEKVRKMAEER 539
>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
Length = 577
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 19/206 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++V +HG CK K D A + + EM + +PD ++Y+ I+ +C+ K D M
Sbjct: 251 YNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMM 310
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
C P +T ++H + K+ EA +V+E M + F L
Sbjct: 311 VHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDM------VNAGFIPGL----------Q 354
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN ++ C +AL++ K++ +PD T+A ++ C +R+ + L++M
Sbjct: 355 TYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVM 414
Query: 395 REMLSKGIVPQESTHKMLAEELEKKS 420
+ +VP + L E L K+
Sbjct: 415 E---ADNVVPNGAICHALVEVLCKQG 437
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/301 (17%), Positives = 124/301 (41%), Gaps = 40/301 (13%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
Y ++ K+ + +EL+ E+ E ++D S L+ L ++
Sbjct: 2 YTTVINGFCKAGQVDQAFELLDEMKERG-------------VKMDVLLHSTLIQGLCRKG 48
Query: 193 SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM-----FQHGFSPDG 247
+ A + F + S + ++ +++G CK + D + +M HG PD
Sbjct: 49 RIDEALEQFKSMGEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDV 108
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+SY+ I+ C+ + K K M+ GC P+V+T + ++ L K ++ EA + +
Sbjct: 109 ISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQ 168
Query: 308 MKSDDCLTDTSFYSSLIFILSK-------------------AVRFLIYNTMISSACVRSE 348
+K +D + +Y++++ + + + +N M+ + E
Sbjct: 169 LKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDE 228
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+ A + +++ + KP+ T+ ++ C ++ + +L EM+ + P T
Sbjct: 229 QEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRIL---LEMVESKVTPDVIT 285
Query: 409 H 409
+
Sbjct: 286 Y 286
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 109/232 (46%), Gaps = 32/232 (13%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ +I+G+CK + D A + + EM + G D + ++ I+ CR+ ++D L++
Sbjct: 1 MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKG---RIDEALEQF 57
Query: 274 QEKG--CKPSVITCTIVMHALEKAKQIYEALKVYEKMK-----SDDCLTDTSFYSSLIFI 326
+ G C P+VIT V++ L KA +I E L++++ M+ S C D YS++I
Sbjct: 58 KSMGEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDA 117
Query: 327 LSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
L KA R A + +++ C P+ T++ + C R+ +
Sbjct: 118 LCKAQRV----------------DKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDE 161
Query: 387 GMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQ 438
+L+ ++ + +VP+ + + +++ G E + ELL H E+
Sbjct: 162 A---YSLLMQLKGEDMVPRAMYYNAVVNGFKRQ--GKPSECL-ELLLHMKEK 207
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 66/325 (20%), Positives = 109/325 (33%), Gaps = 63/325 (19%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN V L K+ K +DE Y L M D S ++D K
Sbjct: 250 TYNVAVHGLCKAGK----------VDE---AYRILLEMVESKVTPDVITYSSIIDGFCKA 296
Query: 192 NSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF------ 243
+ A VF + +CI F L+HG+ + +KS A + ++M GF
Sbjct: 297 GRMDKADDVFTRMMVHECIP-HPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQT 355
Query: 244 -----------------------------SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
PD +Y I+ CR + + L M+
Sbjct: 356 YNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVME 415
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM----KSDDCLTDTSFYSSLIFILSKA 330
P+ C ++ L K ++ EA V + + K+ + ++ K
Sbjct: 416 ADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVL---KG 472
Query: 331 VRF--LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
VR Y ++ S C +A+ +K+ C P T+ + C D
Sbjct: 473 VRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADDA- 531
Query: 389 LVLNLMREMLSKGIVPQESTHKMLA 413
+ M++ G PQ T + L+
Sbjct: 532 --FRIFEAMVAAGFTPQAQTMRTLS 554
>gi|297807861|ref|XP_002871814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317651|gb|EFH48073.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 459
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/317 (20%), Positives = 121/317 (38%), Gaps = 37/317 (11%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA++ Y T Y + ++L KK+ MW+++K++ +LS +
Sbjct: 98 FNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLS-------------LDI 144
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL--SSQIFDVLIHGWCKTRKSDYAQKA 234
+ +++ K V A ++F + + +++ L+H C + A
Sbjct: 145 SGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNALLHALCDVKMFHGAYAL 204
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
++ M + G PD +Y + +C ++ L EM KG P +++ L
Sbjct: 205 IRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRKGFNPPARGRDLLIEGLLN 264
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA--VRFLI----------------- 335
A + A ++ +KM + D +++LI +SK+ V F I
Sbjct: 265 AGYLESAKEIVDKMTKGGFVPDILTFNTLIEAISKSGEVEFCIEMYYTACKLGLCVDIDT 324
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
Y T+I + + A +L ED KP +A +K C D +
Sbjct: 325 YKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDD---AFSFFS 381
Query: 396 EMLSKGIVPQESTHKML 412
+M K P + ML
Sbjct: 382 DMKVKAHPPNRPVYTML 398
>gi|125570756|gb|EAZ12271.1| hypothetical protein OsJ_02159 [Oryza sativa Japonica Group]
Length = 596
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 8/150 (5%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270
++ F++L+ C+ ++ AQ ++E+ + GF PDGV+Y + YCR + +
Sbjct: 209 NAHTFNILVAALCRGEDAERAQGFLEELEEQGFEPDGVTYNTLLSGYCRRGRLQDALHLF 268
Query: 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS-- 328
M + +P +++ T+VM AL KA ++ +A +++++M D YS LI
Sbjct: 269 DVMPYRRVQPDLVSHTVVMDALCKAGRVRDARRMFDRMIQSGLSPDAVAYSVLIAGYCNE 328
Query: 329 ---KAVRFLIYNTMISSACVRSEEGNALKL 355
+ RFL+ + C S EG ALK+
Sbjct: 329 GRLREARFLLMEMV---GCGFSSEGFALKV 355
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/340 (22%), Positives = 129/340 (37%), Gaps = 52/340 (15%)
Query: 119 WAK----TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR 174
WA + G T+N +V AL + + ++E++E G+
Sbjct: 195 WAARAVMARAGVRPNAHTFNILVAALCRGEDAERAQGFLEELEE--QGFEP--------- 243
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVF--LKFK----DCISLSSQIFDVLIHGWCKTRKS 228
D + L+ +R + A +F + ++ D +S + V++ CK +
Sbjct: 244 --DGVTYNTLLSGYCRRGRLQDALHLFDVMPYRRVQPDLVSHT-----VVMDALCKAGRV 296
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
A++ M Q G SPD V+Y+ I YC E R+ + L EM G +V
Sbjct: 297 RDARRMFDRMIQSGLSPDAVAYSVLIAGYCNEGRLREARFLLMEMVGCGFSSEGFALKVV 356
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR---------------- 332
+ + K ++ L + ++ + + YS LI L + +R
Sbjct: 357 VESHVKFSKLLTCLNMVAPIRKHGVVIPSQSYSCLIGALCEDMRPNAARGLLHWMIEDGH 416
Query: 333 ---FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC-CHKKRMKDGM 388
IYN +I C AL ++ ++ + D T+ R+L C C R DG
Sbjct: 417 SPSLAIYNMIIECFCQCDIVEEALDVKVEMISREVRLDFNTY-RALITCFCRLGRSLDGE 475
Query: 389 LVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
++M EM+ G P E+ L K+ N E I
Sbjct: 476 ---SIMAEMIESGFQPNEAICSALVCGFCKEGALNRAELI 512
>gi|449449679|ref|XP_004142592.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08610-like [Cucumis sativus]
gi|449516715|ref|XP_004165392.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08610-like [Cucumis sativus]
Length = 594
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 19/196 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI+ CK K + A + + HG PD V+Y + R + +VD LK M
Sbjct: 315 YNSLINLTCKQGKFEDAALVIDNLLFHGMVPDAVTYNTLLHSLSRRGHWDEVDEILKIMS 374
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
P+V+TC ++++ L K + A+ +M S +CL D +
Sbjct: 375 ISLQPPTVVTCNVLINGLCKNGLLDSAINFLNQMFSYNCLPD----------------II 418
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YNT++ + C A +L + + +C P ++ L K M M +L
Sbjct: 419 TYNTLLGALCKEGMVDEAFQLLHLLTDTACSPGLISYNTVLDGLSRKGYMDKAM---SLY 475
Query: 395 REMLSKGIVPQESTHK 410
+M+ GI+P ++TH+
Sbjct: 476 SQMMENGIIPDDTTHR 491
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 107/251 (42%), Gaps = 37/251 (14%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
S ++D + RN + F+ CI++ I G+ T + D A + +K M
Sbjct: 157 SRVVDIMASRNQIP-------DFECCINM--------IRGFVNTDRMDKAVQVLKIMVMS 201
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD ++Y I C++ L +M GC P VIT V+ + +A
Sbjct: 202 GGVPDIITYNMVIGCLCKQGHLESAIELLNDMSLSGCPPDVITYNAVIRHMFDNGCFDQA 261
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361
++ +++ Y+ LI ++ K + C AL++ +++
Sbjct: 262 VEFWKEQLRKGTPPYLITYTILIELVWKHR---------GTVC-------ALEVLEEMAN 305
Query: 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ C PD T+ + + C + + +D LV++ +L G+VP T+ L L ++
Sbjct: 306 EGCYPDLVTYNSLINLTCKQGKFEDAALVID---NLLFHGMVPDAVTYNTLLHSLSRR-- 360
Query: 422 GNAKERIDELL 432
G+ E +DE+L
Sbjct: 361 GHWDE-VDEIL 370
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 104/241 (43%), Gaps = 28/241 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++++I CK + A + + +M G PD ++Y I H F + KE
Sbjct: 210 YNMVIGCLCKQGHLESAIELLNDMSLSGCPPDVITYNAVIRHMFDNGCFDQAVEFWKEQL 269
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
KG P +IT TI++ + K + AL+V E+M ++ C D Y+SLI + K +F
Sbjct: 270 RKGTPPYLITYTILIELVWKHRGTVCALEVLEEMANEGCYPDLVTYNSLINLTCKQGKFE 329
Query: 334 --------LIYNTMISSACVRSEEGNALKLRQ---------KIEEDSCKPDCETHARSL- 375
L+++ M+ A + ++L R KI S +P L
Sbjct: 330 DAALVIDNLLFHGMVPDAVTYNTLLHSLSRRGHWDEVDEILKIMSISLQPPTVVTCNVLI 389
Query: 376 -KMCCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432
+C K+G+L +N + +M S +P T+ L L K+ + + ++ LL
Sbjct: 390 NGLC------KNGLLDSAINFLNQMFSYNCLPDIITYNTLLGALCKEGMVDEAFQLLHLL 443
Query: 433 T 433
T
Sbjct: 444 T 444
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 59/119 (49%)
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
+VLI+G CK D A + +MF + PD ++Y + C+E + L + +
Sbjct: 386 NVLINGLCKNGLLDSAINFLNQMFSYNCLPDIITYNTLLGALCKEGMVDEAFQLLHLLTD 445
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
C P +I+ V+ L + + +A+ +Y +M + + D + + S+I+ ++ +F+
Sbjct: 446 TACSPGLISYNTVLDGLSRKGYMDKAMSLYSQMMENGIIPDDTTHRSIIWGFCRSNKFV 504
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 1/155 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D + L+ L K V A+++ D I ++ ++ G + D A
Sbjct: 416 DIITYNTLLGALCKEGMVDEAFQLLHLLTDTACSPGLISYNTVLDGLSRKGYMDKAMSLY 475
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+M ++G PD ++ I +CR F + TLK + + G + + I++H L
Sbjct: 476 SQMMENGIIPDDTTHRSIIWGFCRSNKFVEAVETLKGILKGGYEVNSSFYRILVHELCLN 535
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
K++ A++V E M S C ++ + YS++I ++ A
Sbjct: 536 KKVDLAIQVLEMMLSSPCKSNETIYSTIINSIASA 570
>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
Length = 733
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 134/331 (40%), Gaps = 39/331 (11%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA Q Y H P Y AM+E L K+K + + K + + L A + RR
Sbjct: 121 FYWADRQWRYRHDPIVYYAMLEILSKTK----LCQGAKRV-------LRLMAKRRIERR- 168
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
A +M + + + +A + + K I I + IH + D A + +
Sbjct: 169 -PEAFGYVMVSYSRAGKLRNAMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFL 227
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ M P+ ++Y C I+ YC + EM KGC P I+ VM L K
Sbjct: 228 ERMQIVEIXPNVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKE 287
Query: 296 KQIYEALKVYEKM-KSDDCLTDTSFYSSLIFILSK------AVRFL-------------I 335
K+I E + EKM K + L D Y++ + +LSK A+ FL
Sbjct: 288 KRIKELRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVG 347
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
Y+ ++ S C A ++ ++ C PD T+ + C ++++ ++R
Sbjct: 348 YSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAK---KMLR 404
Query: 396 EMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426
+M G P ++ L L K GN+ E
Sbjct: 405 QMYKHGCKPNTVSYTALLNGLCKN--GNSLE 433
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 27/237 (11%)
Query: 204 FKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262
KD L Q+ ++ +H K D A + ++E + F D V Y+ + +CRE
Sbjct: 301 LKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGR 360
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322
K + EM KGC P V+T T V++ L + +++ +A K+ +M C +T Y++
Sbjct: 361 MDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTA 420
Query: 323 LIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI---EEDSCKPDCETHARSLKMCC 379
L+ L K GN+L+ R+ + EE P+ T+ S+ M
Sbjct: 421 LLNGLCK-------------------NGNSLEAREMMNMSEEXWWIPNAITY--SVLMHG 459
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
++ K +L+REM+ KG P +L + L +++ + AK +++ L +
Sbjct: 460 FRREGKSSE-ACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNG 515
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 20/225 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
+T + + L++ L K + A ++ ++ + + I + VL+HG+ + KS A +
Sbjct: 414 NTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLV 473
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+EM + GF P V I+ C+E+ + +++ GC +V+ T V+H +
Sbjct: 474 REMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQK 533
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ AL + + M + D Y+++I L K R EE A KL
Sbjct: 534 DDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRI--------------EE--ATKL 577
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400
K+ P T+ + C R++D +L L+ +MLS+
Sbjct: 578 AMKMLRVGWIPTPVTYRTVIHQYCRMGRVED---LLKLLEKMLSR 619
>gi|297724885|ref|NP_001174806.1| Os06g0499301 [Oryza sativa Japonica Group]
gi|52076487|dbj|BAD45366.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|125597333|gb|EAZ37113.1| hypothetical protein OsJ_21452 [Oryza sativa Japonica Group]
gi|255677074|dbj|BAH93534.1| Os06g0499301 [Oryza sativa Japonica Group]
Length = 642
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 132/306 (43%), Gaps = 39/306 (12%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY+ +V AL + + LV E+ +++G V+ A + V+R +++
Sbjct: 211 TYSTVVSALADAGRVDDAVALVHEM--VADGVVAAEAFNPVLR------------AMLRA 256
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
V A K+F ++ K C+ ++ ++VL+HG ++ A M+ M + G P ++
Sbjct: 257 GDVKGAAKLFGFMQLKGCVP-TTATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMT 315
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y ++ R + +EM+ G + + V+ K+ +I ALKV+E M
Sbjct: 316 YGAVVDGLVRCGRVKDAWKVAEEMERNGLAWNEFVYSTVITGFCKSGEIDCALKVWEAMV 375
Query: 310 SDDCLTDTSFYSSLIFILSKAVRF----LIYNTMISSACVR---------------SEEG 350
+ + YS++I L+ + L++ MI S C +
Sbjct: 376 ASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIHSKCAPNIITYGSIIQGYFKIGDTS 435
Query: 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
AL + +++ C P+ +++ + C+ R+KD M+V + ML +G P +
Sbjct: 436 RALSVWEEMIGAGCVPNAVSYSILINGLCNVGRLKDAMMV---WKHMLDRGCAPDTIAYT 492
Query: 411 MLAEEL 416
+ + L
Sbjct: 493 SMIKGL 498
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,493,618,854
Number of Sequences: 23463169
Number of extensions: 244882549
Number of successful extensions: 745254
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4092
Number of HSP's successfully gapped in prelim test: 1854
Number of HSP's that attempted gapping in prelim test: 683580
Number of HSP's gapped (non-prelim): 27686
length of query: 441
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 295
effective length of database: 8,933,572,693
effective search space: 2635403944435
effective search space used: 2635403944435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 78 (34.7 bits)