BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036107
         (441 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XAF|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
           Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
 pdb|2XAG|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
           Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
 pdb|2XAH|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With (+)-
           Trans-2-Phenylcyclopropyl-1-Amine
 pdb|2XAJ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
           (-)-Trans- 2-Phenylcyclopropyl-1-Amine
 pdb|2XAQ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
           Tranylcypromine Derivative (Mc2584, 13b)
 pdb|2XAS|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
           Tranylcypromine Derivative (Mc2580, 14e)
          Length = 482

 Score = 32.3 bits (72), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 28/101 (27%)

Query: 25  LGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASW-VESLKLNEQSRISSHAL 83
           LG L  ++H I   L  LP++  F     PDE         W VE   L EQ+  S H  
Sbjct: 165 LGMLFWHKHNIEKSLADLPNFTPF-----PDE---------WTVEDKVLFEQA-FSFHGK 209

Query: 84  SEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQT 124
           +        ++ ++L      PDK + +L  F ++W KT+T
Sbjct: 210 T------FHRIQQML------PDKSIASLVKFYYSWKKTRT 238


>pdb|3BCQ|A Chain A, Crystal Structure Of Oxy-Hemoglobin From Brycon Cephalus
 pdb|3BCQ|C Chain C, Crystal Structure Of Oxy-Hemoglobin From Brycon Cephalus
          Length = 142

 Score = 31.6 bits (70), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 4/105 (3%)

Query: 88  ETDVDKVSEILRKRYPSPDKV-VEALKCFCFTWAKTQTGYMHTPE--TYNAMVEALGKSK 144
           + D D +     K  P  + +  +AL      + +T+T + H  +    +A V+  GK+ 
Sbjct: 4   DKDKDSIKAFWAKISPKAEDIGADALARMLTVYPQTKTYFSHWKDLSPGSAPVKKHGKTV 63

Query: 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLV 189
             G + E V +ID+L+NG ++L+ +     R+D     +L   L+
Sbjct: 64  -MGSVAEAVSKIDDLTNGLLTLSELHAFQLRVDPANFKILSHNLL 107


>pdb|3I5G|C Chain C, Crystal Structure Of Rigor-Like Squid Myosin S1
 pdb|3I5H|C Chain C, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
           Absence Of Nucleotide
 pdb|3I5I|C Chain C, The Crystal Structure Of Squid Myosin S1 In The Presence
           Of So4 2-
 pdb|3I5F|C Chain C, Crystal Structure Of Squid Mg.Adp Myosin S1
          Length = 159

 Score = 29.6 bits (65), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%)

Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA 352
           EKA ++ E L +YE+M S D  T    +        +  + L     ISSA +R    N 
Sbjct: 60  EKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGL-----ISSAEIR----NV 110

Query: 353 LK-LRQKIEEDSC 364
           LK L ++I ED C
Sbjct: 111 LKMLGERITEDQC 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.132    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,540,767
Number of Sequences: 62578
Number of extensions: 472962
Number of successful extensions: 1224
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1223
Number of HSP's gapped (non-prelim): 4
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)