BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036107
(441 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 318 bits (816), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 203/519 (39%), Positives = 275/519 (52%), Gaps = 121/519 (23%)
Query: 35 ITNELTGLPSWLKFFDTQSP----------DEDFVIPSLASWVESLKLNEQSRISSHALS 84
+ E LPSW+K F + P DEDFVIPSLA+WVES K + Q ++S +
Sbjct: 37 VAAESPELPSWIKDFLSNKPSSSSSSVSKDDEDFVIPSLANWVESQKFSRQ-QVSEGNVV 95
Query: 85 EDHETDVDKVSEILRKRYPSPDKVVEAL-KCFC------------------------FTW 119
+ D+DKV + L K+ S + VV+ L KC F W
Sbjct: 96 KKPVEDIDKVCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIW 155
Query: 120 AKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG-YVSLAAMSTVMRRL-- 176
A +QTGY+H+ TYNAMV+ LGK + F LMWELV E+++ V+L MS VMRRL
Sbjct: 156 ANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAK 215
Query: 177 ----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
DT AM+ LMD LVK NS+ HA++VFLK D I ++
Sbjct: 216 SGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDART 275
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F++LIHG+CK RK D A+ M M F+PD V+YT F+E YC+E DFR+V+ L+EM+
Sbjct: 276 FNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMR 335
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
E GC P+V+T TIVMH+L K+KQ+ EAL VYEKMK D C+ D FYSSLI ILSK RF
Sbjct: 336 ENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFK 395
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEE---DSCKPDCETHA 372
L+YNTMIS+A S + AL+L +++E+ +SC P+ ET+A
Sbjct: 396 DAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYA 455
Query: 373 RSL-----------------------------------KMCCHKKRMKDGMLVLNLMREM 397
L + C ++++ L E
Sbjct: 456 PLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACL---FFEEA 512
Query: 398 LSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436
+ KG+VP++ST KML +ELEKK++ AK +I L+ T
Sbjct: 513 VRKGMVPRDSTCKMLVDELEKKNMAEAKLKIQSLVQSKT 551
>sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130,
mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2
SV=2
Length = 508
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 188/391 (48%), Gaps = 79/391 (20%)
Query: 119 WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL-- 176
WA++ G+ H+ + Y+ V+ LGK+KK+ M E V+ + + V+L ++ +MRR
Sbjct: 110 WAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMR--GDKLVTLNTVAKIMRRFAG 167
Query: 177 ---------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF 215
+T +M++L+DTL K V A V L+ K I+ ++ F
Sbjct: 168 AGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTF 227
Query: 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
++ IHGWCK + + A ++EM HGF P +SYT I YC++ +F KV L EM+
Sbjct: 228 NIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEA 287
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-- 333
G P+ IT T +M +L K+ EAL+V +MK C D+ FY+ LI L++A R
Sbjct: 288 NGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEE 347
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDS-CKPDCETHARS 374
YN+MI+ C EE A++L +++E + C PD T+
Sbjct: 348 AERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPL 407
Query: 375 LKMCCHK-------KRMKD--------------GMLVLNLMR------------EMLSKG 401
L+ C + K +K+ L+ L R EM+S+
Sbjct: 408 LRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQD 467
Query: 402 IVPQESTHKMLAEELEKKSLGNAKERIDELL 432
I P+ T +L EE++KK++ + ERI+ ++
Sbjct: 468 ITPRHRTCLLLLEEVKKKNMHESAERIEHIM 498
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 148/342 (43%), Gaps = 51/342 (14%)
Query: 117 FTWAKTQTGYMH-TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR 175
F WA ++ Y H +P YN M++ GK ++F L W L+ ++ + N +S+ + ++RR
Sbjct: 137 FNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLI-DLMKSRNVEISIETFTILIRR 195
Query: 176 L-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS 212
D A S+++ L ++ + A F KD
Sbjct: 196 YVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDV 255
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
++ L+ GWC+ + A+K KEM G P+ +Y+ I+ CR + +
Sbjct: 256 IVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFAD 315
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------ 326
M + GC P+ IT +M KA + + L+VY +MK C DT Y+ LI
Sbjct: 316 MLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDEN 375
Query: 327 LSKAVRFLIYNTMISSAC---------------VRSEEGNALKLRQKIEEDSCKPDCETH 371
L AV+ L NTMI C + + A ++ K+ E C+P+ T+
Sbjct: 376 LENAVKVL--NTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTY 433
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
++M K +VL + +EM K + P +T+++L
Sbjct: 434 NILMRMFVGSKSTD---MVLKMKKEMDDKEVEPNVNTYRLLV 472
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 75/179 (41%), Gaps = 15/179 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++EA + + L N L M ++ + + + K+
Sbjct: 362 TYNFLIEAHCRD-------------ENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKK 408
Query: 192 NSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A++++ K + + + +++L+ + ++ +D K KEM P+ +Y
Sbjct: 409 RDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTY 468
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGC-KPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+ +C + KEM E+ C PS+ +V+ L +A Q+ + ++ EKM
Sbjct: 469 RLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKM 527
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 157/362 (43%), Gaps = 46/362 (12%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA Q Y H+ E Y +MV+ L K ++FG +W L++E+ + + + +++R
Sbjct: 134 FVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRF 193
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
D L+D L K SV A K+F + ++ +
Sbjct: 194 ASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLR 253
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F L++GWC+ K A+ + +M + GF PD V YT + Y L++M
Sbjct: 254 YFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDM 313
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR- 332
+ +G +P+ T+++ AL K ++ EA+KV+ +M+ +C D Y++L+ K +
Sbjct: 314 RRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKI 373
Query: 333 ---FLIYNTMISSACVRSEEG---------------NALKLRQKIEEDSCKPDCETHARS 374
+++ + MI + SE L+L +K+ + PD +
Sbjct: 374 DKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVV 433
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLT 433
+++ C +K+ + + N EM G+ P T ++ L + L A + E++T
Sbjct: 434 IRLACKLGEVKEAVRLWN---EMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVT 490
Query: 434 HA 435
Sbjct: 491 RG 492
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060,
mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2
SV=1
Length = 510
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 172/392 (43%), Gaps = 85/392 (21%)
Query: 65 SWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQT 124
S VE+L LNE S S AL + E+L+K + L F WA+ Q
Sbjct: 79 SKVETL-LNEASVKLSPAL----------IEEVLKKLSNAG-----VLALSVFKWAENQK 122
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G+ HT YNA++E+LGK K+F L+W LV ++ + +S + + RR
Sbjct: 123 GFKHTTSNYNALIESLGKIKQFKLIWSLVDDMK--AKKLLSKETFALISRRY-------- 172
Query: 185 MDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+ V A F K ++ + S F+ ++ K+R AQK +M + F
Sbjct: 173 ----ARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRF 228
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD SYT +E + +E + +VD +EM+++G +P V+ I+++A KAK+ EA++
Sbjct: 229 EPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIR 288
Query: 304 VYEKMKSDDCLTDTSFYSSLI---------------FILSKAVRFLI----YNTMISSAC 344
+ +M+ +C + SLI F SK+ F + YN ++ + C
Sbjct: 289 FFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYC 348
Query: 345 VRSEEGNALK------------------------LRQKIEED--------SCKPDCETHA 372
+A K +R + ++ SC+P T+
Sbjct: 349 WSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCEPTVSTYE 408
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
++M C+K+R+ + + + EM KG++P
Sbjct: 409 IMVRMFCNKERLD---MAIKIWDEMKGKGVLP 437
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/332 (20%), Positives = 131/332 (39%), Gaps = 50/332 (15%)
Query: 97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWEL---- 152
++ +RY KV EA+ F + G+ +N M++ L KS+ G ++
Sbjct: 167 LISRRYARARKVKEAIGAFH---KMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKM 223
Query: 153 --------VKEIDELSNGY---VSLAAMSTVMRRL-------DTRAMSVLMDTLVKRNSV 194
+K L G+ ++L + V R + D A ++++ K
Sbjct: 224 KKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKY 283
Query: 195 AHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
A + F ++ ++C S IF LI+G +K + A + + GF + +Y
Sbjct: 284 EEAIRFFNEMEQRNC-KPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNA 342
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
+ YC + T+ EM+ KG P+ T I++H L + ++ EA +VY+ M +
Sbjct: 343 LVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCEP 402
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
++ Y M+ C + A+K+ +++ P +
Sbjct: 403 TVS-------------------TYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFS 443
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
+ CH+ ++ + N EML GI P
Sbjct: 444 SLITALCHENKLDEACEYFN---EMLDVGIRP 472
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 145/341 (42%), Gaps = 46/341 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F W++ Q Y H+ Y+ M+E+ K +++ LMW+L+ + + +++ VMR+
Sbjct: 121 FQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRK--KKMLNVETFCIVMRKY 178
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+ A + L+ L K +V A +VF +D + S+
Sbjct: 179 ARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSK 238
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ +L+ GW K A++ +EM G PD V+Y+ ++ C+ + ++ M
Sbjct: 239 TYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSM 298
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR- 332
CKP+ ++++H ++ EA+ + +M+ D + ++SLI KA R
Sbjct: 299 DPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRM 358
Query: 333 ---FLIYNTMISSACVRSEEGNALKLRQKIEEDS--------------CKPDCETHARSL 375
+ + M S + + + LR IE C+PD +T+ +
Sbjct: 359 KNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEPDADTYTMVI 418
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
KM C KK M+ V MR+ KG+ P T +L L
Sbjct: 419 KMFCEKKEMETADKVWKYMRK---KGVFPSMHTFSVLINGL 456
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 88/191 (46%), Gaps = 16/191 (8%)
Query: 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELV 153
+ +L Y + +++ EA+ F ++G +N+++ A K+ + ++ ++
Sbjct: 309 IYSVLVHTYGTENRLEEAVDTFL---EMERSGMKADVAVFNSLIGAFCKANRMKNVYRVL 365
Query: 154 KEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
KE+ S G ++++ ++++ L++R A+ VF K +
Sbjct: 366 KEMK--SKGVTP-----------NSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEPDAD 412
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ ++I +C+ ++ + A K K M + G P +++ I C E+ +K L+EM
Sbjct: 413 TYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEM 472
Query: 274 QEKGCKPSVIT 284
E G +PS +T
Sbjct: 473 IEMGIRPSGVT 483
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
S F VLI+G C+ R + A ++EM + G P GV++
Sbjct: 445 SMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTF 484
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 96/402 (23%), Positives = 164/402 (40%), Gaps = 62/402 (15%)
Query: 72 LNEQSRISSHALSEDHETDVDKVSEILRKRYPS-PDKVVEALKCFC----------FTWA 120
+NE SR+ S DH D + L P +VE + C F WA
Sbjct: 38 VNEISRVLS-----DHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWA 92
Query: 121 KTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR-----R 175
+ + H+ E+Y+ +VE LG SK+F L+W+ + E E + +S V R
Sbjct: 93 RRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRAN 152
Query: 176 LDTRA------------------MSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFD 216
L + A + L+ +L + V HA + F K K I S++ +
Sbjct: 153 LPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYS 212
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
+L+ GW + R + A+K EM + D ++Y ++ C+ D +EM
Sbjct: 213 ILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNL 272
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR---- 332
G KP + I +HA A ++ A KV ++MK D + + ++ +I L K +
Sbjct: 273 GLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDA 332
Query: 333 FLI---------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
+L+ YN++++ C E A KL +++ C PD T+ LK+
Sbjct: 333 YLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKL 392
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
R + M E + P +T+ ++ L +K
Sbjct: 393 LIRIGRFDRATEIWEGMSE---RKFYPTVATYTVMIHGLVRK 431
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 52/215 (24%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
YNA+++AL KS ++ GY M + + D + ++ +
Sbjct: 245 AYNALLDALCKSG-------------DVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDA 291
Query: 192 NSVAHAYKVFLKFK--DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
V AYKV + K D + + F+ +I CK K D A + EM Q G +PD +
Sbjct: 292 GDVHSAYKVLDRMKRYDLVP-NVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWT 350
Query: 250 YTCFIEHYC-----------------------------------REKDFRKVDYTLKEMQ 274
Y + ++C R F + + M
Sbjct: 351 YNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMS 410
Query: 275 EKGCKPSVITCTIVMHALEKAK-QIYEALKVYEKM 308
E+ P+V T T+++H L + K ++ EA + +E M
Sbjct: 411 ERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMM 445
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 146/335 (43%), Gaps = 46/335 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176
F WA Q GY H+ E +MV L K ++FG +W L++E+ + + + +MRR
Sbjct: 118 FLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRF 177
Query: 177 -----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
D L+D L K SV A KVF ++ + +
Sbjct: 178 ASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLR 237
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
F L++GWC+ K A++ + +M + G PD V +T + Y + +M
Sbjct: 238 YFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDM 297
Query: 274 QEKGCKPSVITCTIVMHAL-EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FI 326
+++G +P+V T+++ AL K++ EA++V+ +M+ C D Y++LI +
Sbjct: 298 RKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGM 357
Query: 327 LSKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373
+ K L Y ++ + + + L+L +K++ C PD +
Sbjct: 358 IDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNV 417
Query: 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
+++ C +K+ + + N EM + G+ P T
Sbjct: 418 VIRLACKLGEVKEAVRLWN---EMEANGLSPGVDT 449
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 94/207 (45%), Gaps = 26/207 (12%)
Query: 215 FDVLIHGWCKTRKS-DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
+ VLI C+T K D A + EM ++G D V+YT I +C+ K L +M
Sbjct: 309 YTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDM 368
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333
++KG PS +T +M A EK +Q E L++ EKMK C D
Sbjct: 369 RKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPD----------------L 412
Query: 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV--L 391
LIYN +I AC E A++L ++E + P +T + + G L+
Sbjct: 413 LIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQ-----GFLIEAC 467
Query: 392 NLMREMLSKGI--VPQESTHKMLAEEL 416
N +EM+S+GI PQ T K L L
Sbjct: 468 NHFKEMVSRGIFSAPQYGTLKSLLNNL 494
>sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420,
mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2
SV=1
Length = 509
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 125/304 (41%), Gaps = 49/304 (16%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM--- 173
F + ++ TP ++N +++ LG+ ++F ++ +L+ E+D+ S + +
Sbjct: 92 FQYLRSLPSPSTTPTSFNLIIDILGRVRQFDVVRQLIVEMDQTSPETFLILVKRLIAAGL 151
Query: 174 -----------------RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD 216
RR L+DTL K A VF + K+ +++
Sbjct: 152 TRQAVRAFDDAPCFLENRRFRLVEFGFLLDTLCKYGYTKMAVGVFNERKEEFGSDEKVYT 211
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----------EKDFRKV 266
+LI GWCK R+ D A+K + EM + G P+ V+Y + CR E++ R
Sbjct: 212 ILIAGWCKLRRIDMAEKFLVEMIESGIEPNVVTYNVLLNGICRTASLHPEERFERNVRNA 271
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
+ EM+++G +P V + +IV+H +A + L + MK+ Y+S++
Sbjct: 272 EKVFDEMRQRGIEPDVTSFSIVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKC 331
Query: 327 LSKAVRFL-------------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
L R YN R + A+ L +K++ CKP
Sbjct: 332 LCSCGRLEEAEELLETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPS 391
Query: 368 CETH 371
+T+
Sbjct: 392 TQTY 395
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 56/117 (47%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS + + + ++ C + + A++ ++ M + G SP +Y CF + Y KD
Sbjct: 318 ISPTIETYTSVVKCLCSCGRLEEAEELLETMVESGISPSSATYNCFFKEYKGRKDANGAM 377
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
++M+ CKPS T +++ ++ ++++ +K+ + D Y+SL+
Sbjct: 378 NLYRKMKNGLCKPSTQTYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLV 434
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 148/354 (41%), Gaps = 71/354 (20%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+TG+ TY +++ + KS + L EL+++++E +LD
Sbjct: 204 VETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERK-------------IKLDAVKY 250
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAM----- 235
S+++D L K S+ +A+ +F + + I+ LI G+C + D K +
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK 310
Query: 236 ------------------------------KEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
KEM Q G SPD V+YT I+ +C+E K
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDK 370
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
++ L M KGC P++ T I+++ KA I + L+++ KM + DT Y++LI
Sbjct: 371 ANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQ 430
Query: 326 -----------------ILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
++S+ VR + Y ++ C E AL++ +KIE+ +
Sbjct: 431 GFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMEL 490
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
D + + C+ ++ D +L + KG+ P T+ ++ L KK
Sbjct: 491 DIGIYNIIIHGMCNASKVDDAW---DLFCSLPLKGVKPDVKTYNIMIGGLCKKG 541
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 89/207 (42%), Gaps = 22/207 (10%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
++I+ C+ RK A AM ++ + G+ PD V+++ I C E + + M E
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEM 171
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI- 335
G KP++IT +++ L ++ +A+ + ++M + Y ++ ++ K+ + +
Sbjct: 172 GHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA 231
Query: 336 ------------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
Y+ +I C NA L ++E K D + ++
Sbjct: 232 MELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRG 291
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVP 404
C+ R DG L+R+M+ + I P
Sbjct: 292 FCYAGRWDDGA---KLLRDMIKRKITP 315
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 87/209 (41%), Gaps = 18/209 (8%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL--DTRAMS 182
G + TYN +++ + K + EL +E+ V RR+ D +
Sbjct: 417 GVVADTVTYNTLIQGFCELGKLEVAKELFQEM---------------VSRRVRPDIVSYK 461
Query: 183 VLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+L+D L A ++F K K + L I++++IHG C K D A +
Sbjct: 462 ILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK 521
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G PD +Y I C++ + D ++M+E G P+ T I++ A ++
Sbjct: 522 GVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKS 581
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
K+ E++K D S ++ +LS
Sbjct: 582 AKLIEEIKRCGFSVDASTVKMVVDMLSDG 610
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/388 (19%), Positives = 153/388 (39%), Gaps = 51/388 (13%)
Query: 71 KLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQ------- 123
K++ + R+ S + + VD E+ R R P P ++++ + F Q
Sbjct: 37 KVSYRERLRSGIVDIKEDDAVDLFQEMTRSR-PRP-RLIDFSRLFSVVARTKQYDLVLDL 94
Query: 124 ------TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD 177
G H T + M+ + +K L + + +I +L GY D
Sbjct: 95 CKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKL--GYEP-----------D 141
Query: 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMK 236
T S L++ L V+ A ++ + + + I + L++G C K A +
Sbjct: 142 TVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLID 201
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
M + GF P+ V+Y ++ C+ L++M+E+ K + +I++ L K
Sbjct: 202 RMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDG 261
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356
+ A ++ +M+ F + +I IY T+I C + KL
Sbjct: 262 SLDNAFNLFNEMEI------KGFKADII----------IYTTLIRGFCYAGRWDDGAKLL 305
Query: 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
+ + + PD + + + ++++ L +EM+ +GI P T+ L +
Sbjct: 306 RDMIKRKITPDVVAFSALIDCFVKEGKLREAE---ELHKEMIQRGISPDTVTYTSLIDGF 362
Query: 417 EKKS-LGNAKERIDELLTH--ATEQRTF 441
K++ L A +D +++ RTF
Sbjct: 363 CKENQLDKANHMLDLMVSKGCGPNIRTF 390
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 142/316 (44%), Gaps = 32/316 (10%)
Query: 119 WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWEL----VKEIDELSNGYVSLAAMSTVMR 174
W Y H+ +Y +++ L + G+++++ +K D + + L + +
Sbjct: 112 WISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNK 171
Query: 175 --------RLDTRAMSVLMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKT 225
+L + L+++L + V +V+++ +D + + ++ +++G+CK
Sbjct: 172 DERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKL 231
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
+ A + + ++ + G PD +YT I YC+ KD EM KGC+ + +
Sbjct: 232 GNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAY 291
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
T ++H L A++I EA+ ++ KMK D+C VR Y +I S C
Sbjct: 292 THLIHGLCVARRIDEAMDLFVKMKDDECFP--------------TVR--TYTVLIKSLCG 335
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ AL L +++EE KP+ T+ + C + + + L+ +ML KG++P
Sbjct: 336 SERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAR---ELLGQMLEKGLMPN 392
Query: 406 ESTHKMLAEELEKKSL 421
T+ L K+ +
Sbjct: 393 VITYNALINGYCKRGM 408
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 119/287 (41%), Gaps = 41/287 (14%)
Query: 175 RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQ 232
R + A + L+ L + A +F+K KD C + + + VLI C + + A
Sbjct: 285 RRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFP-TVRTYTVLIKSLCGSERKSEAL 343
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
+KEM + G P+ +YT I+ C + F K L +M EKG P+VIT +++
Sbjct: 344 NLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGY 403
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------------FILSKAVR------FL 334
K I +A+ V E M+S +T Y+ LI +L+K + +
Sbjct: 404 CKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVV 463
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN++I C +A +L + + PD T+ + C KR+++ +L
Sbjct: 464 TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEA---CDLF 520
Query: 395 REMLSKGIVPQ-----------------ESTHKMLAEELEKKSLGNA 424
+ KG+ P + H ML + L K L N+
Sbjct: 521 DSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNS 567
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 138/332 (41%), Gaps = 46/332 (13%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMS 170
+TG TY ++++L KF EL+ ++ E L NGY +
Sbjct: 351 ETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIE 410
Query: 171 TVM--------RRL--DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLI 219
+ R+L +TR + L+ K N V A V K + L + ++ LI
Sbjct: 411 DAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLI 469
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
G C++ D A + + M G PD +YT I+ C+ K + +++KG
Sbjct: 470 DGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVN 529
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL------------ 327
P+V+ T ++ KA ++ EA + EKM S +CL ++ +++LI L
Sbjct: 530 PNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLL 589
Query: 328 -SKAVRFLIYNTMISSACV------RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380
K V+ + T+ + + + +A Q++ KPD T+ ++ C
Sbjct: 590 EEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCR 649
Query: 381 KKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ R+ D ++M +M G+ P T+ L
Sbjct: 650 EGRLLDAE---DMMAKMRENGVSPDLFTYSSL 678
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 121/304 (39%), Gaps = 35/304 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYVSLAAMSTVMRRLDTR 179
TY +M+++L KSK+ +L +++ L +GY + L+
Sbjct: 499 TYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKM 558
Query: 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF-----------DVLIHGWCKTRKS 228
+ + N++ H K K+ L ++ +LIH K
Sbjct: 559 LSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDF 618
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
D+A ++M G PD +YT FI+ YCRE + + +M+E G P + T + +
Sbjct: 619 DHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSL 678
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSA---CV 345
+ Q A V ++M+ C + SLI K + + Y S C
Sbjct: 679 IKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLI----KHLLEMKYGKQKGSEPELCA 734
Query: 346 RS---EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402
S E ++L +K+ E S P+ +++ + + C ++ V + M+ ++GI
Sbjct: 735 MSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQR--NEGI 792
Query: 403 VPQE 406
P E
Sbjct: 793 SPSE 796
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 118/255 (46%), Gaps = 22/255 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236
D + + ++D L K V AY++F + S+ + ++V+++GWC +++ A + +K
Sbjct: 160 DLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLK 219
Query: 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296
EM + G +P+ +Y ++ + R R EM+++ C+ V+T T V+H A
Sbjct: 220 EMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAG 279
Query: 297 QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK-------AVRF------------LIYN 337
+I A V+++M + L + Y+++I +L K V F YN
Sbjct: 280 EIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYN 339
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
+I E +L Q++E + C+P+ +T+ ++ ++ L L +M
Sbjct: 340 VLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKA---LGLFEKM 396
Query: 398 LSKGIVPQESTHKML 412
S +P T+ +L
Sbjct: 397 GSGDCLPNLDTYNIL 411
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 22/198 (11%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN M++ ++ + WE E M++ D V T+V
Sbjct: 232 TYNTMLKGFFRAGQIRHAWEFFLE-----------------MKKRDCEIDVVTYTTVVHG 274
Query: 192 NSVA----HAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
VA A VF + ++ + S ++ +I CK + A +EM + G+ P+
Sbjct: 275 FGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPN 334
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
+Y I +F + + ++ M+ +GC+P+ T +++ + ++ +AL ++E
Sbjct: 335 VTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFE 394
Query: 307 KMKSDDCLTDTSFYSSLI 324
KM S DCL + Y+ LI
Sbjct: 395 KMGSGDCLPNLDTYNILI 412
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 95/258 (36%), Gaps = 56/258 (21%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG------------------------- 242
I S + F ++ + K D A K M +HG
Sbjct: 122 IGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAY 181
Query: 243 ---------FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
FS D V+Y + +C K K LKEM E+G P++ T ++
Sbjct: 182 ELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFF 241
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF-------------ILSKAVR------FL 334
+A QI A + + +MK DC D Y++++ + + +R
Sbjct: 242 RAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVA 301
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
YN MI C + NA+ + +++ +P+ T+ ++ H G LM
Sbjct: 302 TYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGE---ELM 358
Query: 395 REMLSKGIVPQESTHKML 412
+ M ++G P T+ M+
Sbjct: 359 QRMENEGCEPNFQTYNMM 376
>sp|Q9FZ19|PPR5_ARATH Putative pentatricopeptide repeat-containing protein At1g02420
OS=Arabidopsis thaliana GN=At1g02420 PE=3 SV=2
Length = 491
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 132/305 (43%), Gaps = 48/305 (15%)
Query: 91 VDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMW 150
+D+V + +R + +P + +E + +A G+ H+ + + M+ LG+++KF +W
Sbjct: 74 IDRVLKRVRFSHGNPIQTLE-----FYRYASAIRGFYHSSFSLDTMLYILGRNRKFDQIW 128
Query: 151 ELVKEIDELSNGYVSLAAMSTVMRRL------------------------DTRAMSVLMD 186
EL+ E +S M V+ R+ DT + L+
Sbjct: 129 ELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPDFFDTACFNALLR 188
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
TL + S+ A V+ K Q F++L+ GW + +++ + MK G PD
Sbjct: 189 TLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAFFEEMK---GKGLKPD 245
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+Y I+ YC++++ K + +M+E+ P VIT T V+ L Q +A +V +
Sbjct: 246 VVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLK 305
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
+MK C D + YN I + C+ G+A KL ++ + P
Sbjct: 306 EMKEYGCYPDVA----------------AYNAAIRNFCIARRLGDADKLVDEMVKKGLSP 349
Query: 367 DCETH 371
+ T+
Sbjct: 350 NATTY 354
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAM 235
D + L+D K + AYK+ K ++ I + +I G + D A++ +
Sbjct: 245 DVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVL 304
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KEM ++G PD +Y I ++C + D + EM +KG P+ T + L A
Sbjct: 305 KEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLA 364
Query: 296 KQIYEALKVYEKMKSDDCLTDT 317
+ + ++Y +M ++CL +T
Sbjct: 365 NDLGRSWELYVRMLGNECLPNT 386
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 42/94 (44%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ I +C R+ A K + EM + G SP+ +Y F D + M
Sbjct: 319 YNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYVRML 378
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
C P+ +C ++ ++ +++ A++++E M
Sbjct: 379 GNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDM 412
>sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680,
mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2
SV=1
Length = 521
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 155/360 (43%), Gaps = 69/360 (19%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAA-------- 168
F WAKT+ H+ ET+ ++ L K++KF +++++ L NG V L A
Sbjct: 102 FNWAKTRNPGSHSLETHAIVLHTLTKNRKFKSAESILRDV--LVNGGVDLPAKVFDALLY 159
Query: 169 ----------------------------MSTVMRRLD------TRAMSVLMDTLVKRNSV 194
T M+ D + + M +L+ + V
Sbjct: 160 SYRECDSTPRVFDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRV 219
Query: 195 AHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253
A + + + + C IS + ++++ G+C++ K D + +++M + GF VSY
Sbjct: 220 DIALRFYREMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTL 279
Query: 254 IEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I +C EK LK M K G +P+V+T ++H +A ++ EA KV+ +MK+ +
Sbjct: 280 IAGHC-EKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVN 338
Query: 313 CLTDTSFYSSLIFILSK------AVRF-------------LIYNTMISSACVRSEEGNAL 353
+T Y++LI S+ A RF L YN +I C +++ A
Sbjct: 339 VAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAA 398
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
+ +++++++ P+ T + + C +K G L + M+ G P E T ML
Sbjct: 399 QFVKELDKENLVPNSSTFSALIMGQCVRKNADRG---FELYKSMIRSGCHPNEQTFNMLV 455
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
K+ + +S F LI G C + +D + K M + G P+ ++ + +CR +DF
Sbjct: 406 KENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFD 465
Query: 265 KVDYTLKEM 273
L+EM
Sbjct: 466 GASQVLREM 474
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 131/292 (44%), Gaps = 43/292 (14%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+TG+ TY ++ + KS + L EL+++++E + +LD
Sbjct: 220 VETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERN-------------IKLDAVKY 266
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFK------DCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
S+++D L K S+ +A+ +F + + D I+ ++ LI G+C + D K +
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIT-----YNTLIGGFCNAGRWDDGAKLL 321
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++M + SP+ V+++ I+ + +E R+ D LKEM ++G P+ IT ++ K
Sbjct: 322 RDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKE 381
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIY 336
++ EA+++ + M S C D ++ LI KA R + Y
Sbjct: 382 NRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTY 441
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388
NT++ C + A KL Q++ +PD ++ L C ++ +
Sbjct: 442 NTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKAL 493
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 22/263 (8%)
Query: 71 KLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTP 130
+L E ++ +S+ + D+ IL Y +++ + L+ F + G +
Sbjct: 383 RLEEAIQMVDLMISKGCDPDI-MTFNILINGYCKANRIDDGLELF---REMSLRGVIANT 438
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL--DTRAMSVLMDTL 188
TYN +V+ +S K + +L +E+ V RR+ D + +L+D L
Sbjct: 439 VTYNTLVQGFCQSGKLEVAKKLFQEM---------------VSRRVRPDIVSYKILLDGL 483
Query: 189 VKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+ A ++F K K + L I+ ++IHG C K D A + G D
Sbjct: 484 CDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDA 543
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+Y I CR+ K D ++M E+G P +T I++ A A ++ E+
Sbjct: 544 RAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEE 603
Query: 308 MKSDDCLTDTSFYSSLIFILSKA 330
MKS D S +I +LS
Sbjct: 604 MKSSGFPADVSTVKMVINMLSSG 626
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/315 (20%), Positives = 129/315 (40%), Gaps = 33/315 (10%)
Query: 157 DELSNGYVSLAAMSTV---MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
D+LS+G V + A V + +R + ++D +++A + L C + S+
Sbjct: 58 DKLSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESK 117
Query: 214 -------IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
++I+ +C+ RK YA M ++ + G+ PD V + + C E +
Sbjct: 118 GIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEA 177
Query: 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
+ M E G KP++IT +++ L ++ +A+ + ++M + Y ++ +
Sbjct: 178 LELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNV 237
Query: 327 LSKAVRFLI-------------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
+ K+ + + Y+ +I C NA L ++E K D
Sbjct: 238 MCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKAD 297
Query: 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKE 426
T+ + C+ R DG L+R+M+ + I P T +L + K+ L A +
Sbjct: 298 IITYNTLIGGFCNAGRWDDGA---KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQ 354
Query: 427 RIDELLTHATEQRTF 441
+ E++ T
Sbjct: 355 LLKEMMQRGIAPNTI 369
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 22/226 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F++LI+G+CK + D + +EM G + V+Y ++ +C+ +EM
Sbjct: 406 FNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMV 465
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
+ +P +++ I++ L ++ +AL+++ K++ D Y +I + A +
Sbjct: 466 SRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVD 525
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
YN MIS C + A L +K+ E+ PD T+ ++
Sbjct: 526 DAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTY--NI 583
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ H D L+ EM S G ST KM+ L L
Sbjct: 584 LIRAHLGD-DDATTAAELIEEMKSSGFPADVSTVKMVINMLSSGEL 628
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 142/333 (42%), Gaps = 46/333 (13%)
Query: 125 GYMHTPETYNAMVEALGKSKK-FGLMWELVKEIDE------------LSNGYVSLAAMST 171
G+M +YNA+++A +SK+ + KE+ E L G+ +
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDV 223
Query: 172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIH 220
+ D + +V N++ Y K D L + ++V+I+
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G C+ + + EM + G+S D V+Y I+ YC+E +F + EM G P
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTP 343
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------FILSKAVRFL 334
SVIT T ++H++ KA + A++ ++M+ + Y++L+ +++A R L
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403
Query: 335 -------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
YN +I+ CV + +A+ + + ++E PD +++ L C
Sbjct: 404 REMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFC-- 461
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
R D L + REM+ KGI P T+ L +
Sbjct: 462 -RSYDVDEALRVKREMVEKGIKPDTITYSSLIQ 493
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 130/300 (43%), Gaps = 22/300 (7%)
Query: 124 TGYMHTPETYNAMVEA---LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRA 180
G+ + TYNA++ GK + + E +KE LS VS STV+ R+
Sbjct: 409 NGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE-KGLSPDVVS---YSTVLSGF-CRS 463
Query: 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
V VKR V K D I+ SS LI G+C+ R++ A +EM +
Sbjct: 464 YDVDEALRVKREMVEKGIK-----PDTITYSS-----LIQGFCEQRRTKEACDLYEEMLR 513
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD +YT I YC E D K EM EKG P V+T +++++ L K + E
Sbjct: 514 VGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTRE 573
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A ++ K+ ++ + Y +LI S + F ++I C++ A ++ + +
Sbjct: 574 AKRLLLKLFYEESVPSDVTYHTLIENCSN-IEFKSVVSLIKGFCMKGMMTEADQVFESML 632
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+ KPD + + C R D L +EM+ G + T L + L K+
Sbjct: 633 GKNHKPDGTAYNIMIHGHC---RAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEG 689
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 89/209 (42%), Gaps = 25/209 (11%)
Query: 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266
C S SS +FD+++ + + D A + HGF P +SY ++ R K R +
Sbjct: 130 CYSTSS-VFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSK--RNI 186
Query: 267 DY---TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323
+ KEM E P+V T I++ A I AL +++KM++ CL +
Sbjct: 187 SFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNV------ 240
Query: 324 IFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383
+ YNT+I C + + KL + + +P+ ++ + C + R
Sbjct: 241 ----------VTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGR 290
Query: 384 MKDGMLVLNLMREMLSKGIVPQESTHKML 412
MK+ VL EM +G E T+ L
Sbjct: 291 MKEVSFVLT---EMNRRGYSLDEVTYNTL 316
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 113/290 (38%), Gaps = 35/290 (12%)
Query: 29 LCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPS--LASWVESLKLNEQSRISSHALSED 86
L N HC+T ++ + L+ + D V S L+ + S ++E R+ + +
Sbjct: 421 LINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKG 480
Query: 87 HETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKF 146
+ D S +++ + + EA + + G TY A++ A +
Sbjct: 481 IKPDTITYSSLIQG-FCEQRRTKEACDLY---EEMLRVGLPPDEFTYTALINA------Y 530
Query: 147 GLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-- 204
+ +L K + +L N V + D SVL++ L K++ A ++ LK
Sbjct: 531 CMEGDLEKAL-QLHNEMVEKGVLP------DVVTYSVLINGLNKQSRTREAKRLLLKLFY 583
Query: 205 --------------KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
++C ++ + LI G+C A + + M PDG +Y
Sbjct: 584 EESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAY 643
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
I +CR D RK KEM + G +T ++ AL K ++ E
Sbjct: 644 NIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNE 693
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 36/207 (17%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV-------- 266
+ VLI+G K ++ A++ + ++F P V+Y IE+ C +F+ V
Sbjct: 558 YSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIEN-CSNIEFKSVVSLIKGFC 616
Query: 267 --------DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318
D + M K KP I++H +A I +A +Y++M L T
Sbjct: 617 MKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTV 676
Query: 319 FYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+L+ L K + N++I LR SC+ A+ L
Sbjct: 677 TVIALVKALHKEGKVNELNSVIVHV-----------LR------SCELSEAEQAKVLVEI 719
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQ 405
H++ D +VL+++ EM G +P
Sbjct: 720 NHREGNMD--VVLDVLAEMAKDGFLPN 744
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 138/322 (42%), Gaps = 37/322 (11%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV-SLAAMSTVMRR 175
F +K G T N +V+AL K ++++ EI S G V +L +T++
Sbjct: 178 FKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIP--SMGLVPNLVTYTTIL-- 233
Query: 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKA 234
V R + A +V + D + + VL+ G+CK + A
Sbjct: 234 ----------GGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATV 283
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
M +M ++ P+ V+Y I C+EK + EM E+ P C V+ AL +
Sbjct: 284 MDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCE 343
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR------------------FLIY 336
++ EA ++ KM ++C+ D + S+LI L K R L Y
Sbjct: 344 DHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSIPSLLTY 403
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT+I+ C + E A +L + E CKP+ T+ ++ +K+G+ VL E
Sbjct: 404 NTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVL---EE 460
Query: 397 MLSKGIVPQESTHKMLAEELEK 418
ML G P ++T +L E L+K
Sbjct: 461 MLEIGCFPNKTTFLILFEGLQK 482
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 108/279 (38%), Gaps = 41/279 (14%)
Query: 59 VIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEIL-RKRYPSPDKVVEALKCFC- 116
++P+L ++ L + D E+ + E+L R YP + +C
Sbjct: 222 LVPNLVTYTTIL--------GGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCK 273
Query: 117 ---FTWAKTQTGYMHTPE------TYNAMVEALGKSKKFGLMWELVKE------------ 155
F+ A T M E TY M+ AL K KK G + E
Sbjct: 274 LGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSL 333
Query: 156 ----IDELSNGYVSLAAMSTVMRRL------DTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205
ID L + A + L D +S L+ L K V A K+F +F+
Sbjct: 334 CCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFE 393
Query: 206 DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
S ++ LI G C+ + A + +M++ P+ +Y IE + + ++
Sbjct: 394 KGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKE 453
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
L+EM E GC P+ T I+ L+K + +A+K+
Sbjct: 454 GVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKI 492
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 145/331 (43%), Gaps = 45/331 (13%)
Query: 125 GYMHTPETYNAMVEALGKS--KKFGL-MWELVKEIDELSNGYVSLAAMST---------- 171
G + TY ++ L K+ KK G M+E ++E N Y M+
Sbjct: 228 GLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDA 287
Query: 172 --VMRRLDTRAMS-------VLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHG 221
V + R +S L+ L + + A KV + K D I+ + ++ LI G
Sbjct: 288 FQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDG 347
Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
+C K A +++ G SP V+Y + +CR+ D +KEM+E+G KPS
Sbjct: 348 FCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPS 407
Query: 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------LSKAVRF-- 333
+T TI++ ++ + +A+++ M+ + D YS LI +++A R
Sbjct: 408 KVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFK 467
Query: 334 -----------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
+IYNTMI C ALKL +++EE P+ ++ +++ C ++
Sbjct: 468 SMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKER 527
Query: 383 RMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
+ K+ L+ +M+ GI P S +++
Sbjct: 528 KSKEAE---RLVEKMIDSGIDPSTSILSLIS 555
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 128/307 (41%), Gaps = 35/307 (11%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
Y ++ + +S+ L E+ + NG+V + + L+ +V +
Sbjct: 97 YEVIINSYVQSQSLNLSISYFNEM--VDNGFVP-----------GSNCFNYLLTFVVGSS 143
Query: 193 SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
S + F + K + L F +LI G C+ + + + + E+ + GFSP+ V YT
Sbjct: 144 SFNQWWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTT 203
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
I+ C++ + K EM + G + T T++++ L K + ++YEKM+ D
Sbjct: 204 LIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDG 263
Query: 313 CLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRSEEGNAL 353
+ Y+ ++ L K R + YNT+I C + A
Sbjct: 264 VFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEAN 323
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
K+ +++ D P+ T+ + C ++ L+L R++ S+G+ P T+ +L
Sbjct: 324 KVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKA---LSLCRDLKSRGLSPSLVTYNILV 380
Query: 414 EELEKKS 420
+K
Sbjct: 381 SGFCRKG 387
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
D SVL+ + + A ++F K+C + I++ +I G+CK S A K
Sbjct: 442 DVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNC-EPNEVIYNTMILGYCKEGSSYRALKL 500
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291
+KEM + +P+ SY IE C+E+ ++ + +++M + G PS +++ A
Sbjct: 501 LKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLISRA 557
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/344 (21%), Positives = 146/344 (42%), Gaps = 71/344 (20%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TY ++ + KS + L EL+++++E + +LD S+++D L K
Sbjct: 230 TYGPVLNVMCKSGQTALAMELLRKMEERN-------------IKLDAVKYSIIIDGLCKH 276
Query: 192 NSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAM--------------- 235
S+ +A+ +F + + I+ + +++LI G+C + D K +
Sbjct: 277 GSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTF 336
Query: 236 --------------------KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275
KEM G +PD ++YT I+ +C+E K + + M
Sbjct: 337 SVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVS 396
Query: 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF---------- 325
KGC P++ T I+++ KA +I + L+++ KM + DT Y++LI
Sbjct: 397 KGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNV 456
Query: 326 -------ILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376
++S+ V + Y ++ C E AL++ +KIE+ + D + +
Sbjct: 457 AKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIH 516
Query: 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C+ ++ D +L + KG+ P T+ ++ L KK
Sbjct: 517 GMCNASKVDDAW---DLFCSLPLKGVKPGVKTYNIMIGGLCKKG 557
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 22/216 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKV--FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
DT + L+D K N + A ++ + K C + + F++LI+G+CK + D +
Sbjct: 367 DTITYTSLIDGFCKENHLDKANQMVDLMVSKGC-DPNIRTFNILINGYCKANRIDDGLEL 425
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
++M G D V+Y I+ +C +EM + P+++T I++ L
Sbjct: 426 FRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCD 485
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LI 335
+ +AL+++EK++ D Y+ +I + A +
Sbjct: 486 NGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKT 545
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
YN MI C + A L +K+EED PD T+
Sbjct: 546 YNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTY 581
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276
++I+ +C+ RK A AM ++ + G+ P+ ++++ I C E + + M E
Sbjct: 128 IMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM 187
Query: 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI- 335
G KP +IT +++ L + + EA+ + +KM C + Y ++ ++ K+ + +
Sbjct: 188 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 247
Query: 336 ------------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377
Y+ +I C NA L ++E + T+ +
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 307
Query: 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C+ R DG L+R+M+ + I P T +L + K+
Sbjct: 308 FCNAGRWDDGA---KLLRDMIKRKINPNVVTFSVLIDSFVKEG 347
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/332 (19%), Positives = 138/332 (41%), Gaps = 39/332 (11%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
++ + A+ K+K++ L+ L K+++ + + L T +S++++ +
Sbjct: 91 FSRLFSAIAKTKQYDLVLALCKQME-----------LKGIAHNLYT--LSIMINCFCRCR 137
Query: 193 SVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
+ A+ K K ++ F LI+G C + A + + M + G PD ++
Sbjct: 138 KLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITIN 197
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ C + + +M E GC+P+ +T V++ + K+ Q A+++ KM+
Sbjct: 198 TLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEER 257
Query: 312 DCLTDTSFYSSLIFILSK-------------------AVRFLIYNTMISSACVRSEEGNA 352
+ D YS +I L K + YN +I C +
Sbjct: 258 NIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDG 317
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
KL + + + P+ T + + + ++++ L +EM+ +GI P T+ L
Sbjct: 318 AKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE---ELHKEMIHRGIAPDTITYTSL 374
Query: 413 AEELEKKS-LGNAKERIDELLTHATEQ--RTF 441
+ K++ L A + +D +++ + RTF
Sbjct: 375 IDGFCKENHLDKANQMVDLMVSKGCDPNIRTF 406
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 97/238 (40%), Gaps = 21/238 (8%)
Query: 96 EILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE 155
IL Y +++ + L+ F + G + TYN +++ + K + EL +E
Sbjct: 407 NILINGYCKANRIDDGLELF---RKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQE 463
Query: 156 IDELSNGYVSLAAMSTVMRRLDTRAMS--VLMDTLVKRNSVAHAYKVFLKF-KDCISLSS 212
+ V R++ ++ +L+D L A ++F K K + L
Sbjct: 464 M---------------VSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDI 508
Query: 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
I++++IHG C K D A + G P +Y I C++ + + ++
Sbjct: 509 GIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRK 568
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330
M+E G P T I++ A +++K+ E++K D S +I +LS
Sbjct: 569 MEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDG 626
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 131/291 (45%), Gaps = 41/291 (14%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++++L K ++K++ ELS S+ +T L+D K
Sbjct: 437 TYNMLIDSLCSKGKLDEALNMLKQM-ELSGCARSVITYNT------------LIDGFCKA 483
Query: 192 NSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
N A ++F + + +S +S ++ LI G CK+R+ + A + M +M G PD +Y
Sbjct: 484 NKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTY 543
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+ H+CR D +K ++ M GC+P ++T ++ L KA ++ A K+ ++
Sbjct: 544 NSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQ- 602
Query: 311 DDCLTDTSFYSSLIFILSKAVRFL--IYNTMISSACVRSEEGNALKL-RQKIEEDSCKPD 367
K + YN +I + + A+ L R+ +E++ PD
Sbjct: 603 -----------------MKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPD 645
Query: 368 CETHARSLKMCCHKKRMKDGML--VLNLMREMLSKGIVPQESTHKMLAEEL 416
++ + C+ G + ++ + E+L KG VP+ S+ MLAE L
Sbjct: 646 AVSYRIVFRGLCN----GGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGL 692
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 128/301 (42%), Gaps = 38/301 (12%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
Q GY TYN+++ L K G + E V+ +D+ M T +T +
Sbjct: 323 QEGYDPDVYTYNSVISGLCK---LGEVKEAVEVLDQ----------MITRDCSPNTVTYN 369
Query: 183 VLMDTLVKRNSVAHAYKV--FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L+ TL K N V A ++ L K + F+ LI G C TR A + +EM
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILP-DVCTFNSLIQGLCLTRNHRVAMELFEEMRS 428
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD +Y I+ C + + LK+M+ GC SVIT ++ KA + E
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTRE 488
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMIS 341
A +++++M+ ++ Y++LI L K+ R YN++++
Sbjct: 489 AEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLT 548
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401
C + A + Q + + C+PD T+ + C R++ + L+R + KG
Sbjct: 549 HFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVE---VASKLLRSIQMKG 605
Query: 402 I 402
I
Sbjct: 606 I 606
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 98/227 (43%), Gaps = 20/227 (8%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ L++G CK +A + M M Q G+ PD +Y I C+ + ++ L +M
Sbjct: 298 FNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMI 357
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
+ C P+ +T ++ L K Q+ EA ++ + S L D
Sbjct: 358 TRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVC---------------- 401
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394
+N++I C+ A++L +++ C+PD T+ + C K ++ + LN++
Sbjct: 402 TFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEA---LNML 458
Query: 395 REMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATEQRT 440
++M G T+ L + K + A+E DE+ H + +
Sbjct: 459 KQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNS 505
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/348 (21%), Positives = 142/348 (40%), Gaps = 55/348 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE------------LSNGYV 164
F A + + P Y ++ LG+S F M ++++++ L Y
Sbjct: 70 FNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYA 129
Query: 165 SLAAMSTVMR-----------RLDTRAMSVLMDTLVKRNS-----VAHAYKVFLKFKDCI 208
++ + DT + +++ LV NS ++HA K +
Sbjct: 130 QFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDV 189
Query: 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268
S F+VLI C+ + A +++M +G PD ++T ++ Y E D
Sbjct: 190 S----TFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR 245
Query: 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC-LTDTSFYSSLIFIL 327
++M E GC S ++ +++H K ++ +AL ++M + D D +++L+ L
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGL 305
Query: 328 SKA--VRFLI-----------------YNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
KA V+ I YN++IS C E A+++ ++ C P+
Sbjct: 306 CKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNT 365
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
T+ + C + ++++ L R + SKGI+P T L + L
Sbjct: 366 VTYNTLISTLCKENQVEEAT---ELARVLTSKGILPDVCTFNSLIQGL 410
>sp|Q9FX35|PP117_ARATH Pentatricopeptide repeat-containing protein At1g73400,
mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2
SV=2
Length = 568
Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 126/310 (40%), Gaps = 49/310 (15%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALG----KSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172
FTWA Q Y H P YN M++ L K+K+F ++ +++ + + V + + +
Sbjct: 146 FTWAGHQEHYSHEPIAYNEMIDILSSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEI 205
Query: 173 MRRL-----------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209
+R+ + A ++L+D L K V + + + +
Sbjct: 206 LRKYCERYLTHVQKFAKRKRIRVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVK 265
Query: 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269
+ F+VL GWC+ R A K ++EM + G P+ +Y I+ +C+ +
Sbjct: 266 PDANTFNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADL 325
Query: 270 LKEMQEKG---CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326
M KG P+ T +++ AL K + E ++ +M S CL D S Y +I
Sbjct: 326 FDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEG 385
Query: 327 L------SKAVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367
+ +A +FL YN + C + ALKL ++ E C P
Sbjct: 386 MCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPS 445
Query: 368 CETHARSLKM 377
+T+ + M
Sbjct: 446 VQTYNMLISM 455
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 21/204 (10%)
Query: 128 HTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
H PE TY A ++ ++ G+ +DE ++ + + + + + ++++
Sbjct: 299 HKPENFTYCAAIDTFCQA---GM-------VDEAADLFDFMITKGSAVSAPTAKTFALMI 348
Query: 186 DTLVKRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
L K + +++ + C+ S DV I G C K D A K + EM G+
Sbjct: 349 VALAKNDKAEECFELIGRMISTGCLPDVSTYKDV-IEGMCMAEKVDEAYKFLDEMSNKGY 407
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLK---EMQEKGCKPSVITCTIVMHALEKAKQIYE 300
PD V+Y CF+ C RK D LK M E C PSV T +++ +
Sbjct: 408 PPDIVTYNCFLRVLCEN---RKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDG 464
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLI 324
A + +M DC+ D Y ++I
Sbjct: 465 AFNTWTEMDKRDCVQDVETYCAMI 488
>sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010,
mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2
SV=2
Length = 572
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 145/342 (42%), Gaps = 46/342 (13%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR- 175
F WA Q GY+ + Y++M+ LGK +KF W L+ E+ + S V+ + ++R+
Sbjct: 148 FVWAGKQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKY 207
Query: 176 ----------------------LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213
+ L+ L + +V+ A + KD ++
Sbjct: 208 CAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAK 267
Query: 214 IFDVLIHGWCKTRKSDY-AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272
F+++++GWC S A++ EM G D VSY+ I Y + KV
Sbjct: 268 SFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDR 327
Query: 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL-TDTSFYSSLIFILSKAV 331
M+++ +P V+HAL KA + EA + + M+ + + + Y+SLI L KA
Sbjct: 328 MKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKAR 387
Query: 332 RF----LIYNTMISSA-------------CVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
+ +++ M+ +R+ E +L K+ + C+P ET+
Sbjct: 388 KTEEAKQVFDEMLEKGLFPTIRTYHAFMRILRTGE-EVFELLAKMRKMGCEPTVETYIML 446
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ C R +D VL L EM K + P S++ ++ L
Sbjct: 447 IRKLC---RWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGL 485
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 66/167 (39%), Gaps = 34/167 (20%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKA 234
D + + ++ L K + V+ A + ++ + + ++ LI CK RK++ A++
Sbjct: 336 DRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQV 395
Query: 235 MKEMFQHGFSPDGVSYTCF--------------------------------IEHYCREKD 262
EM + G P +Y F I CR +D
Sbjct: 396 FDEMLEKGLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRD 455
Query: 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
F V EM+EK P + + +++H L +I EA Y++MK
Sbjct: 456 FDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMK 502
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 122/292 (41%), Gaps = 33/292 (11%)
Query: 153 VKEIDELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVFL 202
V + L NGY + + R R D S L++ L K N + A+ +F
Sbjct: 275 VVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFD 334
Query: 203 KF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
+ K + + IF LIHG + + D +++ ++M G PD V Y + +C+
Sbjct: 335 EMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNG 394
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
D + M +G +P IT T ++ + + AL++ ++M + D +S
Sbjct: 395 DLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFS 454
Query: 322 SLIFILSKAVRFL-------------------IYNTMISSACVRSEEGNALKLRQKIEED 362
+L+ + K R + Y M+ + C + + KL ++++ D
Sbjct: 455 ALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSD 514
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
P T+ L C +MK+ ++L+ ML+ G+VP + T+ L E
Sbjct: 515 GHVPSVVTYNVLLNGLCKLGQMKNADMLLD---AMLNIGVVPDDITYNTLLE 563
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 133/310 (42%), Gaps = 38/310 (12%)
Query: 136 MVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVA 195
+++ + K G +W EI L G+ L+ ++LM+ K +++
Sbjct: 211 LLDRMMKLNPTGTIWGFYMEI--LDAGF-----------PLNVYVFNILMNKFCKEGNIS 257
Query: 196 HAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI 254
A KVF + K + + F+ LI+G+CK D + +M + PD +Y+ I
Sbjct: 258 DAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALI 317
Query: 255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
C+E EM ++G P+ + T ++H + +I + Y+KM S
Sbjct: 318 NALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQ 377
Query: 315 TDTSFYSSLIFILSK-----AVRFLI--------------YNTMISSACVRSEEGNALKL 355
D Y++L+ K A R ++ Y T+I C + AL++
Sbjct: 378 PDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEI 437
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
R++++++ + D + + C + R+ D L REML GI P + T+ M+ +
Sbjct: 438 RKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERAL---REMLRAGIKPDDVTYTMMMDA 494
Query: 416 LEKKSLGNAK 425
KK G+A+
Sbjct: 495 FCKK--GDAQ 502
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 83/216 (38%), Gaps = 42/216 (19%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ LI G+C+ + A + KEM Q+G D V ++ + C+E + L+EM
Sbjct: 418 YTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREML 477
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334
G KP +T T++M A K K+ ++M+SD + +
Sbjct: 478 RAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSV----------------V 521
Query: 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCET----------HARSLKMCCHKKRM 384
YN +++ C + NA L + PD T HA S K K +
Sbjct: 522 TYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSSKRYIQKPEI 581
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
GIV +++K + EL++ S
Sbjct: 582 ----------------GIVADLASYKSIVNELDRAS 601
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/333 (20%), Positives = 128/333 (38%), Gaps = 49/333 (14%)
Query: 117 FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEI------DELSNGYVSLAAMS 170
F + +Q G+ T ETY + L + F L++ + + S+ ++SL M
Sbjct: 105 FKFISSQPGFRFTVETYFVLARFLAVHEMFTEAQSLIELVVSRKGKNSASSVFISLVEMR 164
Query: 171 TVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ-IFDVLIHG-------W 222
+ + LM T + A + C LS + FDV I G
Sbjct: 165 VT--PMCGFLVDALMITYTDLGFIPDAIQ-------CFRLSRKHRFDVPIRGCGNLLDRM 215
Query: 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282
K + E+ GF + + + +C+E + E+ ++ +P+V
Sbjct: 216 MKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTV 275
Query: 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV----------- 331
++ +++ K + E ++ +M+ D YS+LI L K
Sbjct: 276 VSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDE 335
Query: 332 ---RFLIYNTMISSACV----RSEEGNALKLR-QKIEEDSCKPDCETHARSLKMCCHKKR 383
R LI N +I + + R+ E + +K QK+ +PD + + C
Sbjct: 336 MCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFC---- 391
Query: 384 MKDGMLVL--NLMREMLSKGIVPQESTHKMLAE 414
K+G LV N++ M+ +G+ P + T+ L +
Sbjct: 392 -KNGDLVAARNIVDGMIRRGLRPDKITYTTLID 423
>sp|Q9LFM6|PP375_ARATH Pentatricopeptide repeat-containing protein At5g11310,
mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2
SV=1
Length = 602
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 141/338 (41%), Gaps = 58/338 (17%)
Query: 116 CFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKE---IDELSNGYVSLAAMSTV 172
F WA+ + G+ +P ++++V +L K+++F + W LV + DE SN VS +
Sbjct: 121 VFKWAEMKPGFTLSPSLFDSVVNSLCKAREFEIAWSLVFDRVRSDEGSN-LVSADTFIVL 179
Query: 173 MRRL---------------------------DTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205
+RR + R + VL+D L K V A +
Sbjct: 180 IRRYARAGMVQQAIRAFEFARSYEPVCKSATELRLLEVLLDALCKEGHVREASMYLERIG 239
Query: 206 DCIS----LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
+ S +IF++L++GW ++RK A+K +EM P V+Y IE YCR +
Sbjct: 240 GTMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMR 299
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
+ L+EM+ + + + ++ L +A ++ EAL + E+
Sbjct: 300 RVQIAMEVLEEMKMAEMEINFMVFNPIIDGLGEAGRLSEALGMMER-------------- 345
Query: 322 SLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381
F+ + YN+++ + C + A K+ + + P T+ K
Sbjct: 346 --FFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKH 403
Query: 382 KRMKDGMLVLNLMREMLSKGIVPQESTH----KMLAEE 415
+ ++GM NL +++ G P T+ KML E+
Sbjct: 404 NKTEEGM---NLYFKLIEAGHSPDRLTYHLILKMLCED 438
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 43/86 (50%)
Query: 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
+ K K++ ++ + G SPD ++Y ++ C + KEM+ +G P
Sbjct: 400 FSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGIDPD 459
Query: 282 VITCTIVMHALEKAKQIYEALKVYEK 307
++T T+++H L + + + EA + ++
Sbjct: 460 LLTTTMLIHLLCRLEMLEEAFEEFDN 485
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 51/291 (17%), Positives = 106/291 (36%), Gaps = 67/291 (23%)
Query: 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR-------------KSD- 229
L D L + H+ + + K +LS +FD +++ CK R +SD
Sbjct: 107 LFDRLSSSPMLLHSVFKWAEMKPGFTLSPSLFDSVVNSLCKAREFEIAWSLVFDRVRSDE 166
Query: 230 ----------------YAQKAMKEM------FQHGFSPDGVSYT------CFIEHYCREK 261
YA+ M + F + P S T ++ C+E
Sbjct: 167 GSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSYEPVCKSATELRLLEVLLDALCKEG 226
Query: 262 DFRKVDYTLKEM---QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318
R+ L+ + + PSV I+++ +++++ +A K++E+MK+ +
Sbjct: 227 HVREASMYLERIGGTMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVV 286
Query: 319 FYSSLI-------------------FILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359
Y +LI + + F+++N +I AL + ++
Sbjct: 287 TYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMVFNPIIDGLGEAGRLSEALGMMERF 346
Query: 360 EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410
P T+ +K C + +L + M+++G+ P +T+
Sbjct: 347 FVCESGPTIVTYNSLVKNFCKAGDLPGASKILKM---MMTRGVDPTTTTYN 394
>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540,
mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2
SV=1
Length = 599
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/367 (20%), Positives = 151/367 (41%), Gaps = 53/367 (14%)
Query: 69 SLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH 128
+L N ++ + L H+ V+ + R P A + FC WA + G+ H
Sbjct: 143 ALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKP-------AFRFFC--WAAERQGFAH 193
Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR-------------- 174
TYN+M+ L K+++F M +++E+ + G +++ + M+
Sbjct: 194 ASRTYNSMMSILAKTRQFETMVSVLEEMG--TKGLLTMETFTIAMKAFAAAKERKKAVGI 251
Query: 175 ---------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKT 225
++ ++ L+D+L + A +F K K+ + + + VL++GWC+
Sbjct: 252 FELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRV 311
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
R A + +M HG PD V++ +E R M+ KG P+V +
Sbjct: 312 RNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSY 371
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
TI++ K + A++ ++ M D + +Y +I+
Sbjct: 372 TIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAA----------------VYTCLITGFGT 415
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ + +L ++++E PD +T+ +K+ ++K + G + N +M+ I P
Sbjct: 416 QKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYN---KMIQNEIEPS 472
Query: 406 ESTHKML 412
T M+
Sbjct: 473 IHTFNMI 479
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 38/270 (14%)
Query: 131 ETYNAMVEALGKSK---KFGLMWELVKE--------IDELSNGYVSLAAMSTVMR----- 174
ET N ++++LG++K + ++++ +KE L NG+ + + R
Sbjct: 265 ETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDM 324
Query: 175 -----RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CISLSSQIFDVLIHGWCKTR 226
+ D A +V+++ L++ + A K+F K C ++ S + ++I +CK
Sbjct: 325 IDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRS--YTIMIRDFCKQS 382
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
+ A + +M G PD YTC I + +K V LKEMQEKG P T
Sbjct: 383 SMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYN 442
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDC--------LTDTSFYSSLIFILSKAVRFLIYNT 338
++ + K ++Y KM ++ + S++ + + + +AV ++
Sbjct: 443 ALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAV----WDE 498
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDC 368
MI + + +R I E + C
Sbjct: 499 MIKKGICPDDNSYTVLIRGLISEGKSREAC 528
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 14/161 (8%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
+G Y ++ G KK ++EL+KE+ E G+ D + +
Sbjct: 397 SGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQE--KGHPP-----------DGKTYNA 443
Query: 184 LMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ + + H +++ K ++ I S F++++ + R + + EM + G
Sbjct: 444 LIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKG 503
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283
PD SYT I E R+ L+EM +KG K +I
Sbjct: 504 ICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLI 544
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470,
mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2
SV=1
Length = 599
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/401 (20%), Positives = 162/401 (40%), Gaps = 60/401 (14%)
Query: 69 SLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH 128
+L N ++ + L H+ V+ + R P A + FC WA + G+ H
Sbjct: 143 ALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKP-------AFRFFC--WAAERQGFAH 193
Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR-------------- 174
TYN+M+ L K+++F M +++E+ + G +++ + M+
Sbjct: 194 DSRTYNSMMSILAKTRQFETMVSVLEEMG--TKGLLTMETFTIAMKAFAAAKERKKAVGI 251
Query: 175 ---------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKT 225
++ ++ L+D+L + A +F K K+ + + + VL++GWC+
Sbjct: 252 FELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRV 311
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
R A + +M G PD V++ +E R + M+ KG P+V +
Sbjct: 312 RNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSY 371
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI--FILSKAVRFL--------- 334
TI++ K + A++ ++ M D + Y+ LI F K + +
Sbjct: 372 TIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQE 431
Query: 335 --------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386
YN +I + +A ++ K+ ++ +P T +K + +
Sbjct: 432 KGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEM 491
Query: 387 GMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKER 427
G V EM+ KGI P ++++ +L L +G K R
Sbjct: 492 GRAVWE---EMIKKGICPDDNSYTVLIRGL----IGEGKSR 525
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 16/182 (8%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
+G Y ++ G KK ++EL+KE+ E G+ D + +
Sbjct: 397 SGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQE--KGHPP-----------DGKTYNA 443
Query: 184 LMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ + + HA +++ K ++ I S F++++ + R + + +EM + G
Sbjct: 444 LIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKG 503
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ--IYE 300
PD SYT I E R+ L+EM +KG K +I + Q I+E
Sbjct: 504 ICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFE 563
Query: 301 AL 302
L
Sbjct: 564 EL 565
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820,
mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2
SV=1
Length = 598
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/367 (20%), Positives = 151/367 (41%), Gaps = 53/367 (14%)
Query: 69 SLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH 128
+L N ++ + L H+ V+ + R P A + FC WA + G+ H
Sbjct: 142 ALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKP-------AFRFFC--WAAERQGFAH 192
Query: 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR-------------- 174
TYN+M+ L K+++F M +++E+ + G +++ + M+
Sbjct: 193 DSRTYNSMMSILAKTRQFETMVSVLEEMG--TKGLLTMETFTIAMKAFAAAKERKKAVGI 250
Query: 175 ---------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKT 225
++ ++ L+D+L + A +F K K+ + + + VL++GWC+
Sbjct: 251 FELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRV 310
Query: 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285
R A + +M HG PD V++ +E R M+ KG P+V +
Sbjct: 311 RNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSY 370
Query: 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345
TI++ K + A++ ++ M D + +Y +I+
Sbjct: 371 TIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAA----------------VYTCLITGFGT 414
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ + +L ++++E PD +T+ +K+ ++K + G + N +M+ I P
Sbjct: 415 QKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYN---KMIQNEIEPS 471
Query: 406 ESTHKML 412
T M+
Sbjct: 472 IHTFNMI 478
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 38/270 (14%)
Query: 131 ETYNAMVEALGKSK---KFGLMWELVKE--------IDELSNGYVSLAAMSTVMR----- 174
ET N ++++LG++K + ++++ +KE L NG+ + + R
Sbjct: 264 ETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDM 323
Query: 175 -----RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CISLSSQIFDVLIHGWCKTR 226
+ D A +V+++ L++ + A K+F K C ++ S + ++I +CK
Sbjct: 324 IDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRS--YTIMIRDFCKQS 381
Query: 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286
+ A + +M G PD YTC I + +K V LKEMQEKG P T
Sbjct: 382 SMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYN 441
Query: 287 IVMHALEKAKQIYEALKVYEKMKSDDC--------LTDTSFYSSLIFILSKAVRFLIYNT 338
++ + K ++Y KM ++ + S++ + + + +AV ++
Sbjct: 442 ALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAV----WDE 497
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDC 368
MI + + +R I E + C
Sbjct: 498 MIKKGICPDDNSYTVLIRGLISEGKSREAC 527
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 16/182 (8%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183
+G Y ++ G KK ++EL+KE+ E G+ D + +
Sbjct: 396 SGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQE--KGHPP-----------DGKTYNA 442
Query: 184 LMDTLVKRNSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242
L+ + + H +++ K ++ I S F++++ + R + + EM + G
Sbjct: 443 LIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKG 502
Query: 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ--IYE 300
PD SYT I E R+ L+EM +KG K +I + Q I+E
Sbjct: 503 ICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFE 562
Query: 301 AL 302
L
Sbjct: 563 EL 564
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 122/278 (43%), Gaps = 31/278 (11%)
Query: 184 LMDTLVKRN---SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
LM L+K N V + YK ++ K I + F+V+I+ CKT K + A+ M++M
Sbjct: 194 LMIALLKENRSADVEYVYKEMIRRK--IQPNVFTFNVVINALCKTGKMNKARDVMEDMKV 251
Query: 241 HGFSPDGVSYTCFIEHYCR---EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
+G SP+ VSY I+ YC+ K D LKEM E P++ T I++ K
Sbjct: 252 YGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDN 311
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFIL------SKAV-------------RFLIYNT 338
+ ++KV+++M D + Y+SLI L S+A+ + YN
Sbjct: 312 LPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNA 371
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+I+ C AL + ++ P + + C ++ DG L EM
Sbjct: 372 LINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDG---FALKEEME 428
Query: 399 SKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHA 435
+GIVP T+ L L ++ AK+ D+L +
Sbjct: 429 REGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG 466
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 110/240 (45%), Gaps = 28/240 (11%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISL-SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L++ K + + A +F K ++ +++++++LI +CK K D +EM +
Sbjct: 370 NALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMER 429
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G PD +Y C I CR + ++ KG P ++T I+M + + +
Sbjct: 430 EGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRK 488
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN---ALKLRQ 357
A + ++M + R L YN ++ C +EGN A +R
Sbjct: 489 AAMLLKEMSK----------------MGLKPRHLTYNIVMKGYC---KEGNLKAATNMRT 529
Query: 358 KIE-EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++E E + + ++ L+ K +++D ++LN EML KG+VP T++++ EE+
Sbjct: 530 QMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLN---EMLEKGLVPNRITYEIVKEEM 586
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 110/246 (44%), Gaps = 21/246 (8%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYNA++ K+ +++KE ++ A+ T TR ++L+D K
Sbjct: 368 TYNALINGFCKN-------DMLKEALDMFGSVKGQGAVPT------TRMYNMLIDAYCKL 414
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ + + + ++ I ++ LI G C+ + A+K ++ G PD V++
Sbjct: 415 GKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTF 473
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
+E YCR+ + RK LKEM + G KP +T IVM K + A + +M+
Sbjct: 474 HILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEK 533
Query: 311 DDCL-TDTSFYSSLIFILSKAVRF----LIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
+ L + + Y+ L+ S+ + ++ N M+ V + + +++++ +
Sbjct: 534 ERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEI-VKEEMVDQGFV 592
Query: 366 PDCETH 371
PD E H
Sbjct: 593 PDIEGH 598
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 24/237 (10%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCI----SLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
+ L+D K YK K+ + S + F++LI G+ K + K KE
Sbjct: 262 NTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKE 321
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M P+ +SY I C + +M G +P++IT +++ K
Sbjct: 322 MLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDM 381
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357
+ EAL ++ +K + T +YN +I + C + + L++
Sbjct: 382 LKEALDMFGSVKGQGAVPTTR----------------MYNMLIDAYCKLGKIDDGFALKE 425
Query: 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
++E + PD T+ + C ++ L ++ SKG+ P T +L E
Sbjct: 426 EMEREGIVPDVGTYNCLIAGLCRNGNIEAAK---KLFDQLTSKGL-PDLVTFHILME 478
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/270 (19%), Positives = 113/270 (41%), Gaps = 29/270 (10%)
Query: 184 LMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+D V+ S + +F + D + ++S I D+L+ + + + +A K +
Sbjct: 123 FLDGFVRNGSDHQVHSIFHAISMCDNVCVNSIIADMLVLAYANNSRFELGFEAFKRSGYY 182
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
G+ +S + +E V+Y KEM + +P+V T +V++AL K ++ +A
Sbjct: 183 GYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKA 242
Query: 302 LKVYEKMKSDDCLTDTSFYSSLI----------------FILSKAV------RFLIYNTM 339
V E MK C + Y++LI +L + V +N +
Sbjct: 243 RDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNIL 302
Query: 340 ISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399
I ++K+ +++ + KP+ ++ + C+ ++ + +++ +M+S
Sbjct: 303 IDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISE---AISMRDKMVS 359
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERID 429
G+ P T+ L K + KE +D
Sbjct: 360 AGVQPNLITYNALINGFCKNDM--LKEALD 387
>sp|P0C8R0|PP416_ARATH Putative pentatricopeptide repeat-containing protein At5g43820
OS=Arabidopsis thaliana GN=At5g43820 PE=3 SV=1
Length = 546
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 92/422 (21%), Positives = 172/422 (40%), Gaps = 84/422 (19%)
Query: 71 KLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTP 130
KL +S I S +D V+++L + S EA+ F F WA + G
Sbjct: 97 KLKGKSAIQKSLSSLGIGLSIDIVADVLNRGNLSG----EAMVTF-FDWAVREPGVTKDV 151
Query: 131 ETYNAMVEALGKSKKFGLMWELVK---------EIDELSNGYVSLAAMSTVMRRLD---- 177
+Y+ ++ ALG+ K F M +++K +++ L+ S + V R ++
Sbjct: 152 GSYSVILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEE 211
Query: 178 ---------TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS 228
T + + L+ L +R+ V+ A VF K I S ++++I GW K +
Sbjct: 212 SESFGVKCSTESFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEV 271
Query: 229 DYAQKAMKEMFQHGFSPDGVSYTCFIE--------------------------------- 255
+ +K +KEM + GF PD +SY+ IE
Sbjct: 272 EEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAM 331
Query: 256 --HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313
++ +DF + + M ++ C+P++ T + ++ L K +++ +AL+++E+M S
Sbjct: 332 ICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGV 391
Query: 314 LTDTSFYSSLIFILSKA----VRFLIYNTMISSACVRSEEGNALKLRQ------------ 357
L T +S + L +IY + C SE L L++
Sbjct: 392 LPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLN 451
Query: 358 ---KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+++E D E + + C +++ +LV M E + KG P + L+
Sbjct: 452 VWDEMQESGYPSDVEVYEYIVDGLCIIGHLENAVLV---MEEAMRKGFCPNRFVYSRLSS 508
Query: 415 EL 416
+L
Sbjct: 509 KL 510
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 153/332 (46%), Gaps = 54/332 (16%)
Query: 129 TPE--TYNAMVEALGKSKKFGLMWELVKEIDEL-SNG--------YVSLAAMSTVMRRLD 177
TP+ TYN +V + K G + E +K ++++ S+G + L +M + R +D
Sbjct: 271 TPDVVTYNVLVNGICKE---GRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMD 327
Query: 178 TRAM----------------SVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIH 220
+ ++L++ L ++ + A + K + +S ++ L+H
Sbjct: 328 AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLH 387
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
G+CK +K D A + ++ M G PD V+Y + C++ L ++ KGC P
Sbjct: 388 GFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSP 447
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340
+IT V+ L KA + +A+K+ ++M++ D DT YSSL+ LS+
Sbjct: 448 VLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSR----------- 496
Query: 341 SSACVRSEEGNALKLRQKIEEDSCKPDCET-HARSLKMCCHKKRMKDGMLVLNLMREMLS 399
+ A+K + E +P+ T ++ L +C K R D ++ + M++
Sbjct: 497 -----EGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLC--KSRQTD--RAIDFLVFMIN 547
Query: 400 KGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431
+G P E+++ +L E L + G AKE ++ L
Sbjct: 548 RGCKPNETSYTILIEGLAYE--GMAKEALELL 577
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 114/261 (43%), Gaps = 28/261 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKA 234
D +V++ K + +A V D +S+S + ++ ++ C + K A +
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVL----DRMSVSPDVVTYNTILRSLCDSGKLKQAMEV 226
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+ M Q PD ++YT IE CR+ L EM+++GC P V+T ++++ + K
Sbjct: 227 LDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICK 286
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-------------------I 335
++ EA+K M S C + ++ ++ + R++
Sbjct: 287 EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVT 346
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395
+N +I+ C + G A+ + +K+ + C+P+ ++ L C +K+M + +
Sbjct: 347 FNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDR---AIEYLE 403
Query: 396 EMLSKGIVPQESTHKMLAEEL 416
M+S+G P T+ + L
Sbjct: 404 RMVSRGCYPDIVTYNTMLTAL 424
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 26/244 (10%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LI G+C+ K+ A K ++ + G PD ++Y I YC+ + L M
Sbjct: 143 LIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS--- 199
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI------LSKAV 331
P V+T ++ +L + ++ +A++V ++M DC D Y+ LI + A+
Sbjct: 200 VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAM 259
Query: 332 RFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+ L YN +++ C A+K + C+P+ TH L+
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATE 437
C R D L+ +ML KG P T +L L +K LG A + ++++ H +
Sbjct: 320 CSTGRWMDAE---KLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQ 376
Query: 438 QRTF 441
+
Sbjct: 377 PNSL 380
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 19/196 (9%)
Query: 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292
K ++ M HG PD + T I +CR RK L+ ++ G P VIT +++
Sbjct: 123 KFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGY 182
Query: 293 EKAKQIYEALKVYEKMK-SDDCLTDTSFYSSL---------IFILSKAVR------FLIY 336
KA +I AL V ++M S D +T + SL + +L + ++ + Y
Sbjct: 183 CKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITY 242
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
+I + C S G+A+KL ++ + C PD T+ + C + R+ + + LN +
Sbjct: 243 TILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLN---D 299
Query: 397 MLSKGIVPQESTHKML 412
M S G P TH ++
Sbjct: 300 MPSSGCQPNVITHNII 315
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 14/147 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +++ L K+ K G + +K +DE M + DT S L+ L +
Sbjct: 451 TYNTVIDGLAKAGKTG---KAIKLLDE----------MRAKDLKPDTITYSSLVGGLSRE 497
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
V A K F +F + I ++ F+ ++ G CK+R++D A + M G P+ SY
Sbjct: 498 GKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSY 557
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKG 277
T IE E ++ L E+ KG
Sbjct: 558 TILIEGLAYEGMAKEALELLNELCNKG 584
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 18/180 (10%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN M+ AL K K + + V+ +++LS+ S V+ +T ++D L K
Sbjct: 416 TYNTMLTALCKDGK---VEDAVEILNQLSS-----KGCSPVLITYNT-----VIDGLAKA 462
Query: 192 NSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
A K+ ++ KD + + + L+ G + K D A K E + G P+ V+
Sbjct: 463 GKTGKAIKLLDEMRAKD-LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVT 521
Query: 250 YTCFIEHYCREKDF-RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+ + C+ + R +D+ L M +GCKP+ + TI++ L EAL++ ++
Sbjct: 522 FNSIMLGLCKSRQTDRAIDF-LVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNEL 580
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 140/346 (40%), Gaps = 50/346 (14%)
Query: 108 VVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVS-- 165
V +++ F A+ GY+H ++ MV L + KF +L+ + ++ N VS
Sbjct: 29 VEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAAEDLIVRM-KIENCVVSED 87
Query: 166 -----LAAMSTVMRRLDT----------------RAMSVLMDTLVKRNSVAHAYKVFLKF 204
V R D+ +A ++ LV+ N + A+K +
Sbjct: 88 ILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNM 147
Query: 205 KDCISLSSQI--FDVLIHGWCKTRKS-DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261
++ I L + +VLI C+ + D K EM + G PD +Y I CR
Sbjct: 148 RE-IGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFG 206
Query: 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYS 321
+ EM EK C P+V+T T +++ L +K + EA++ E+MKS + YS
Sbjct: 207 RIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYS 266
Query: 322 SLIFILSKAVRFL-------------------IYNTMISSACVRSEEGNALKLRQKIEED 362
SL+ L K R L Y T+I+ C + A++L ++
Sbjct: 267 SLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQ 326
Query: 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408
KPD + + + C + ++ N + EM+ GI P T
Sbjct: 327 GLKPDAGLYGKVISGFCAISKFREAA---NFLDEMILGGITPNRLT 369
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 72/194 (37%), Gaps = 27/194 (13%)
Query: 182 SVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239
S LMD L K A ++F + + C + + LI G CK +K A + + M
Sbjct: 266 SSLMDGLCKDGRSLQAMELFEMMMARGC-RPNMVTYTTLITGLCKEQKIQEAVELLDRMN 324
Query: 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI-------VMHAL 292
G PD Y I +C FR+ L EM G P+ +T I V+ L
Sbjct: 325 LQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGL 384
Query: 293 EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA 352
A A +Y M+S + SL+ L C + E A
Sbjct: 385 -CANYPSRAFTLYLSMRSRGISVEVETLESLVKCL----------------CKKGEFQKA 427
Query: 353 LKLRQKIEEDSCKP 366
++L +I D C P
Sbjct: 428 VQLVDEIVTDGCIP 441
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 24/224 (10%)
Query: 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
+ +G+ D S+ + F+ + + M+ + C S + + +
Sbjct: 43 YANGYVHDQSSFGYMVLRLVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRP 102
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKA----VRFLIY---------------NTM 339
+++L+V+ KMK DC Y +++ IL + + F Y N +
Sbjct: 103 FDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVL 162
Query: 340 ISSACVRSEEGNA-LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
I + C +A LK+ ++ + C PD T+ + C R+ + L EM+
Sbjct: 163 IKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAK---KLFTEMV 219
Query: 399 SKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHATEQRTF 441
K P T+ L L K++ A ++E+ + E F
Sbjct: 220 EKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVF 263
>sp|Q9M8M3|PP136_ARATH Pentatricopeptide repeat-containing protein At1g80550,
mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2
SV=1
Length = 448
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 146/346 (42%), Gaps = 57/346 (16%)
Query: 108 VVEALKCFC---------FTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE 158
V EAL C+ F W + ++G+ HT ET+N +++ LGK +F + W L+ +
Sbjct: 50 VCEALTCYSNDWQKALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIG 109
Query: 159 LSNGYVSLAAMSTVMRRL----------------------DTRAMSVLMDTLVKRNSVAH 196
+ + V +R D + L+D L + V
Sbjct: 110 NTESVPNHVTFRIVFKRYVTAHLVQEAIDAYDKLDDFNLRDETSFYNLVDALCEHKHVVE 169
Query: 197 AYKV-FLK--FKDCISLS-SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
A ++ F K + S+S ++I ++++ GW K ++ K+M G + D SY+
Sbjct: 170 AEELCFGKNVIGNGFSVSNTKIHNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSI 229
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
+++ C+ K KEM+ + K V+ V+ A+ ++ + ++V+ +M+
Sbjct: 230 YMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERG 289
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
C + + +NT+I C +A ++ ++ + C+PD
Sbjct: 290 CEPNVA----------------THNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPD----- 328
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418
S+ C R++ +L+L M+ G+ P+ T+ ML + E+
Sbjct: 329 -SITYMCLFSRLEKPSEILSLFGRMIRSGVRPKMDTYVMLMRKFER 373
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 117/263 (44%), Gaps = 25/263 (9%)
Query: 180 AMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
+ ++++ L K V A +VF + + C+ + L+ G CK + D A + E
Sbjct: 189 SFNLVIKALCKLRFVDRAIEVFRGMPERKCLP-DGYTYCTLMDGLCKEERIDEAVLLLDE 247
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
M G SP V Y I+ C++ D +V + M KGC P+ +T ++H L +
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGK 307
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRFL-------------IYNT 338
+ +A+ + E+M S C+ + Y +LI L K AVR L IY+
Sbjct: 308 LDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSV 367
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+IS + A+ L +K+ E CKP+ ++ + C + + + +LN M+
Sbjct: 368 LISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILN---RMI 424
Query: 399 SKGIVPQESTHKMLAEELEKKSL 421
+ G +P T+ L + K L
Sbjct: 425 ASGCLPNAYTYSSLMKGFFKTGL 447
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 118/283 (41%), Gaps = 28/283 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
L++ LVK+ A ++ ++ L+ I+ VLI G K K++ A ++M +
Sbjct: 331 GTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAE 390
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ V Y+ ++ CRE + L M GC P+ T + +M K E
Sbjct: 391 KGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEE 450
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMIS 341
A++V+++M C + YS LI L R + Y+++I
Sbjct: 451 AVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIK 510
Query: 342 SACVRSEEGNALKLRQKI---EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
C ALKL ++ EE +PD T+ L C +K + ++L+ ML
Sbjct: 511 GLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRA---VDLLNSML 567
Query: 399 SKGIVPQESTHKMLAEELEKKSLGNAKER--IDELLTHATEQR 439
+G P T L +KS K R ++EL+ +++
Sbjct: 568 DRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLLKRQ 610
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 16/189 (8%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS + F+++I CK R D A + + M + PDG +Y ++ C+E+ +
Sbjct: 183 ISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAV 242
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
L EMQ +GC PS + +++ L K + K+ + M C+ +
Sbjct: 243 LLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNE---------- 292
Query: 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387
+ YNT+I C++ + A+ L +++ C P+ T+ + ++R D
Sbjct: 293 ------VTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDA 346
Query: 388 MLVLNLMRE 396
+ +L+ M E
Sbjct: 347 VRLLSSMEE 355
>sp|Q1PFC5|PP130_ARATH Pentatricopeptide repeat-containing protein At1g77405
OS=Arabidopsis thaliana GN=At1g77405 PE=2 SV=1
Length = 458
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/383 (21%), Positives = 158/383 (41%), Gaps = 47/383 (12%)
Query: 75 QSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFC--FTWAKTQTGYMHTPET 132
+S + LS++ + +V + Y P KV L+ F W +T G+ H T
Sbjct: 70 RSPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFFWIETHFGFDHNEIT 129
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
M L K F +W+ ++++ NG + T +++ LM L +
Sbjct: 130 CRDMACLLAKGNDFKGLWDFLRQVSRRENG----------KNVVTTASITCLMKCLGEEG 179
Query: 193 SVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF--SPDGVS 249
V A F + K+ ++ +I+ C+ A+ + +M GF PD +
Sbjct: 180 FVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTYT 239
Query: 250 YTCFIEHYCR-------EKDFRK----VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298
YT I YCR K R+ + +EM +G P V+T ++ K +I
Sbjct: 240 YTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRI 299
Query: 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK 358
AL+++E MK+ C+ + + YN+ I V +E A+++ +
Sbjct: 300 GRALELFEDMKTKGCVPNQ----------------VTYNSFIRYYSVTNEIEGAIEMMRT 343
Query: 359 IEE-DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417
+++ P T+ + +R + +L+ EM+ G+VP+E T+K++ + L
Sbjct: 344 MKKLGHGVPGSSTYTPLIHALVETRRAAEAR---DLVVEMVEAGLVPREYTYKLVCDALS 400
Query: 418 KKSLGNA-KERIDELLTHATEQR 439
+ L + E + + + +QR
Sbjct: 401 SEGLASTLDEELHKRMREGIQQR 423
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 130/321 (40%), Gaps = 48/321 (14%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G+M T ET+ M+ K F L+ E+ E R+ ++ +
Sbjct: 270 GFMPTLETFGTMINGFCKEGDFVASDRLLSEVKERG-------------LRVSVWFLNNI 316
Query: 185 MDTLVKRNSVAHAYKV-------FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237
+D + H YKV ++ DC +++LI+ CK K + A + E
Sbjct: 317 IDAKYR-----HGYKVDPAESIGWIIANDC-KPDVATYNILINRLCKEGKKEVAVGFLDE 370
Query: 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297
+ G P+ +SY I+ YC+ K++ L +M E+GCKP ++T I++H L +
Sbjct: 371 ASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGH 430
Query: 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-------------------IYNT 338
+ +A+ + K+ D + Y+ L+ L K RFL +Y T
Sbjct: 431 MDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYAT 490
Query: 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
+I + A K+ E K D H +K C + + + +N M E
Sbjct: 491 LIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNE-- 548
Query: 399 SKGIVPQESTHKMLAEELEKK 419
+ +VP + T+ + + K+
Sbjct: 549 -EHLVPDKFTYSTIIDGYVKQ 568
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 23/231 (9%)
Query: 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264
K CI + ++ +I G+CK + A KE+ GF P ++ I +C+E DF
Sbjct: 234 KGCIP-NIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFV 292
Query: 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324
D L E++E+G + SV ++ A + + + + ++DC D + Y+ LI
Sbjct: 293 ASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNILI 352
Query: 325 FILSK------AVRF-------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365
L K AV F L Y +I + C E A KL ++ E CK
Sbjct: 353 NRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCK 412
Query: 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
PD T+ + M D +N+ +++ +G+ P + + ML L
Sbjct: 413 PDIVTYGILIHGLVVSGHMDDA---VNMKVKLIDRGVSPDAAIYNMLMSGL 460
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 100/222 (45%), Gaps = 11/222 (4%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D + L+D ++ A KVF L + + + + +I G+C++ D A M
Sbjct: 484 DAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACM 543
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M + PD +Y+ I+ Y +++D + M++ CKP+V+T T +++
Sbjct: 544 NRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQ 603
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL-----IYNTMISSACVRSEEG 350
A + +++M+ D + + Y++LI L+K L + M+++ CV +E
Sbjct: 604 GDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKAVYYWELMMTNKCVPNEVT 663
Query: 351 NALKLRQKIEEDSCK----PDCETHARSLKMCCHKKRMK-DG 387
L+ +++ S K PD H +S RMK DG
Sbjct: 664 FNCLLQGFVKKTSGKVLAEPDGSNHGQSSLFSEFFHRMKSDG 705
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 49/249 (19%), Positives = 102/249 (40%), Gaps = 41/249 (16%)
Query: 200 VFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR 259
VF + +D + + ++FD W + K D E F +GF+ + F++ R
Sbjct: 70 VFDRIQD-VEIGVKLFD-----WLSSEKKD-------EFFSNGFA-----CSSFLKLLAR 111
Query: 260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK-MKSDDCLTDTS 318
+ F +++ L ++ + K + + V+HA ++ + +A+++Y+ ++ D + D
Sbjct: 112 YRIFNEIEDVLGNLRNENVKLTHEALSHVLHAYAESGSLSKAVEIYDYVVELYDSVPDVI 171
Query: 319 FYSSLIFILSKAVRFLIYNTMISSACVRSE----------------EGNALKLRQKIE-- 360
+SL+ +L K+ R + C R + EG R+ IE
Sbjct: 172 ACNSLLSLLVKSRRLGDARKVYDEMCDRGDSVDNYSTCILVKGMCNEGKVEVGRKLIEGR 231
Query: 361 -EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419
C P+ + + C +++ LV +E+ KG +P T + K+
Sbjct: 232 WGKGCIPNIVFYNTIIGGYCKLGDIENAYLVF---KELKLKGFMPTLETFGTMINGFCKE 288
Query: 420 SLGNAKERI 428
A +R+
Sbjct: 289 GDFVASDRL 297
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC---REKDFRKVDYTLKEMQE 275
+HG KT A +M + GFSPD VS+ + +C K +R +D+ + E
Sbjct: 722 VHGMVKT-----ACMFQDKMVKKGFSPDPVSFAAILHGFCVVGNSKQWRNMDFC--NLGE 774
Query: 276 KGCKPSV 282
KG + +V
Sbjct: 775 KGLEVAV 781
>sp|Q9M316|PP292_ARATH Pentatricopeptide repeat-containing protein At3g61520,
mitochondrial OS=Arabidopsis thaliana GN=At3g61520 PE=2
SV=1
Length = 766
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 116/272 (42%), Gaps = 37/272 (13%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
+NA++ LG++ M +LV ++DE V R D + +L++TL K
Sbjct: 297 FNALLSCLGRNMDISRMNDLVLKMDE-------------VKIRPDVVTLGILINTLCKSR 343
Query: 193 SVAHAYKVFLKFK-------DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM-FQHGFS 244
V A +VF K + + I S F+ LI G CK + A++ + M + +
Sbjct: 344 RVDEALEVFEKMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCA 403
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P+ V+Y C I+ YCR + M+E KP+V+T ++ + + + A+
Sbjct: 404 PNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVF 463
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
+ M+ + + + Y T+I + C S A+ +K+ E C
Sbjct: 464 FMDMEKEGVKGNV----------------VTYMTLIHACCSVSNVEKAMYWYEKMLEAGC 507
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
PD + + + C +R D + V+ ++E
Sbjct: 508 SPDAKIYYALISGLCQVRRDHDAIRVVEKLKE 539
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 108/221 (48%), Gaps = 19/221 (8%)
Query: 197 AYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255
A +V K K+ SL +++LI +C ++ + + +M + G PD ++Y I
Sbjct: 530 AIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNTLIS 589
Query: 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315
+ + KDF V+ +++M+E G P+V T V+ A ++ EALK+++ M +
Sbjct: 590 FFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVN 649
Query: 316 DTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ +IYN +I++ G AL L+++++ +P+ ET+ +L
Sbjct: 650 PNT---------------VIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETY-NAL 693
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C ++K G +L LM EM+ + P + T ++L E L
Sbjct: 694 FKCLNEK--TQGETLLKLMDEMVEQSCEPNQITMEILMERL 732
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 114/272 (41%), Gaps = 58/272 (21%)
Query: 172 VMRRLDT-----RAMSVLMDTLVKRNSVAHAYKVF---LKFKDCISLSSQIFDVLIHGWC 223
V RLD+ + +V++D L++ V A+KV L+ + + D+++H
Sbjct: 174 VYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVW 233
Query: 224 KTR--KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC----------------------- 258
K R + + HG SP+ V T FI C
Sbjct: 234 KGRLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANAAWDILSDLMKNKTPLE 293
Query: 259 ------------REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
R D +++ + +M E +P V+T I+++ L K++++ EAL+V+E
Sbjct: 294 APPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFE 353
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC--VRSEEGNALKLRQKIEEDSC 364
KM+ TD I + ++ F NT+I C R +E L +R K+EE C
Sbjct: 354 KMRGKR--TDDGN-----VIKADSIHF---NTLIDGLCKVGRLKEAEELLVRMKLEE-RC 402
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
P+ T+ + C +++ V++ M+E
Sbjct: 403 APNAVTYNCLIDGYCRAGKLETAKEVVSRMKE 434
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 115/271 (42%), Gaps = 34/271 (12%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF---LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQK 233
D + L+D VK + A K++ +K K C ++ LI G+CK ++ + +
Sbjct: 319 DLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFP-DVVAYNTLIKGFCKYKRVEEGME 377
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
+EM Q G + V+YT I + + +D K+M G P ++T I++ L
Sbjct: 378 VFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLC 437
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-------------------FL 334
+ AL V+E M+ D D Y+++I L KA + +
Sbjct: 438 NNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVV 497
Query: 335 IYNTMISSACVRS--EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG--MLV 390
Y TM+S C + EE +AL + K ED P+ T+ + + R++DG
Sbjct: 498 TYTTMMSGFCRKGLKEEADALFVEMK--EDGPLPNSGTYNTLI-----RARLRDGDEAAS 550
Query: 391 LNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
L++EM S G ST ++ L L
Sbjct: 551 AELIKEMRSCGFAGDASTFGLVTNMLHDGRL 581
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 124/302 (41%), Gaps = 34/302 (11%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
++ ++ A+ K KF L+ L +++ L + + S+ ++ +R+
Sbjct: 78 FSKLLSAIAKMNKFDLVISLGEQMQNLGISH-------------NLYTYSIFINYFCRRS 124
Query: 193 SVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
++ A + K K S + L++G+C + A + +M + G+ PD V++T
Sbjct: 125 QLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFT 184
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ + + ++ M KGC+P ++T V++ L K + AL + KM+
Sbjct: 185 TLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKG 244
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
D +IYNT+I C +A L K+E KPD T+
Sbjct: 245 KIEADV----------------VIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 288
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDE 430
+ C+ R D L+ +ML K I P L + K+ L A++ DE
Sbjct: 289 NPLISCLCNYGRWSDAS---RLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDE 345
Query: 431 LL 432
++
Sbjct: 346 MV 347
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 113/267 (42%), Gaps = 27/267 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVF--LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234
DT + L+D K N + A ++F + K C + +LI+ +CK ++ D +
Sbjct: 349 DTITYNSLIDGFCKENCLHEANQMFDLMVSKGC-EPDIVTYSILINSYCKAKRVDDGMRL 407
Query: 235 MKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294
+E+ G P+ ++Y + +C+ +EM +G PSV+T I++ L
Sbjct: 408 FREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCD 467
Query: 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LI 335
++ +AL+++EKM+ Y+ +I + A + +
Sbjct: 468 NGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVT 527
Query: 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML-VLNLM 394
YN MI C + A L +K++ED C PD T+ + G++ + L+
Sbjct: 528 YNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTY----NILIRAHLGGSGLISSVELI 583
Query: 395 REMLSKGIVPQESTHKMLAEELEKKSL 421
EM G ST KM+ + L + L
Sbjct: 584 EEMKVCGFSADSSTIKMVIDMLSDRRL 610
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 114/258 (44%), Gaps = 18/258 (6%)
Query: 72 LNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPE 131
L+E +++ +S+ E D+ S IL Y +V + ++ F +K G +
Sbjct: 366 LHEANQMFDLMVSKGCEPDIVTYS-ILINSYCKAKRVDDGMRLFREISSK---GLIPNTI 421
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +V +S K EL +E+ VS +V+ +L+D L
Sbjct: 422 TYNTLVLGFCQSGKLNAAKELFQEM-------VSRGVPPSVV------TYGILLDGLCDN 468
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
+ A ++F K K ++L I++++IHG C K D A + G PD V+Y
Sbjct: 469 GELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTY 528
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I C++ + D ++M+E GC P T I++ A + ++++ E+MK
Sbjct: 529 NVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKV 588
Query: 311 DDCLTDTSFYSSLIFILS 328
D+S +I +LS
Sbjct: 589 CGFSADSSTIKMVIDMLS 606
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/413 (21%), Positives = 160/413 (38%), Gaps = 94/413 (22%)
Query: 107 KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVK--EIDELSNGYV 164
KV +A+ F + Q+ + TP +N + A+ ++K++ L+ K E++ + +
Sbjct: 50 KVNDAIDLF---ESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMY 106
Query: 165 SLAAMS-------------TVMRRL-------DTRAMSVLMDTLVKRNSVAHAYKVFLKF 204
++ M +V+ R DT S L++ V+ A + +
Sbjct: 107 TMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRM 166
Query: 205 ------KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258
D +++S+ LI+G C + A + M ++GF PD V+Y + C
Sbjct: 167 VEMKQRPDLVTVST-----LINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLC 221
Query: 259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318
+ + ++M+E+ K SV+ +IV+ +L K +AL ++ +M+ D
Sbjct: 222 KSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVV 281
Query: 319 FYSSLIF----------------------ILSKAVRF----------------------- 333
YSSLI I+ V F
Sbjct: 282 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 341
Query: 334 ---------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384
+ YN++I C + A ++ + C+PD T++ + C KR+
Sbjct: 342 ITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRV 401
Query: 385 KDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHAT 436
DGM L RE+ SKG++P T+ L + L AKE E+++
Sbjct: 402 DDGM---RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 451
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 124/303 (40%), Gaps = 47/303 (15%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+ G+ TY ++ L KS L +L ++++E R + +
Sbjct: 202 VEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEE---------------RNIKASVV 246
Query: 182 --SVLMDTLVKRNSVAHAYKVFLKFK------DCISLSSQIFDVLIHGWCKTRKSDYAQK 233
S+++D+L K S A +F + + D ++ SS LI G C K D K
Sbjct: 247 QYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSS-----LIGGLCNDGKWDDGAK 301
Query: 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293
++EM PD V+++ I+ + +E + EM +G P IT ++
Sbjct: 302 MLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC 361
Query: 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353
K ++EA ++++ M S C D + Y+ +I+S C + +
Sbjct: 362 KENCLHEANQMFDLMVSKGCEPD----------------IVTYSILINSYCKAKRVDDGM 405
Query: 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
+L ++I P+ T+ + C ++ L +EM+S+G+ P T+ +L
Sbjct: 406 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK---ELFQEMVSRGVPPSVVTYGILL 462
Query: 414 EEL 416
+ L
Sbjct: 463 DGL 465
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 103/225 (45%), Gaps = 22/225 (9%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F LI + K K A++ EM G +PD ++Y I+ +C+E + + M
Sbjct: 318 FSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMV 377
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF--------- 325
KGC+P ++T +I++++ KAK++ + ++++ ++ S + +T Y++L+
Sbjct: 378 SKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLN 437
Query: 326 --------ILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
++S+ V + Y ++ C E AL++ +K+++ + +
Sbjct: 438 AAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIII 497
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
C+ ++ D +L + KG+ P T+ ++ L KK
Sbjct: 498 HGMCNASKVDDAW---SLFCSLSDKGVKPDVVTYNVMIGGLCKKG 539
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 153/367 (41%), Gaps = 55/367 (14%)
Query: 74 EQSRISSHALSEDHETDVDKVSEILR--KRYPSPDKVVEALKCFCFTWAKTQTGYM---H 128
+ S S + + + D+ E+ R K +P D F++ K+ G + H
Sbjct: 65 KSSDFSGSMIRKSSKPDLSSSEEVTRGLKSFPDTDS--------SFSYFKSVAGNLNLVH 116
Query: 129 TPETYNAMVEAL---GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185
T ET N M+EAL GK ++ +++L+++ +++R DT +
Sbjct: 117 TTETCNYMLEALRVDGKLEEMAYVFDLMQK---------------RIIKR-DTNTYLTIF 160
Query: 186 DTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS 244
+L + + A K ++ L++ ++ LIH K+R A + + M GF
Sbjct: 161 KSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFR 220
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P +Y+ + + +D V LKEM+ G KP+V T TI + L +A +I EA ++
Sbjct: 221 PSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEI 280
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACV 345
++M + C D Y+ LI L A + + Y T++
Sbjct: 281 LKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSD 340
Query: 346 RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
+ + + ++E+D PD T + C + L++MR+ +GI+P
Sbjct: 341 NRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRD---QGILPN 397
Query: 406 ESTHKML 412
T+ L
Sbjct: 398 LHTYNTL 404
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 117/282 (41%), Gaps = 33/282 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184
G+ + +TY++++ LGK + + L+KE M T+ + + ++
Sbjct: 218 GFRPSLQTYSSLMVGLGKRRDIDSVMGLLKE-------------METLGLKPNVYTFTIC 264
Query: 185 MDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243
+ L + + AY++ + D + VLI C RK D A++ ++M
Sbjct: 265 IRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRH 324
Query: 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303
PD V+Y ++ + +D V EM++ G P V+T TI++ AL KA EA
Sbjct: 325 KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFD 384
Query: 304 VYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS 363
+ M+ L + Y++LI L + R +AL+L +E
Sbjct: 385 TLDVMRDQGILPNLHTYNTLICGLLRVHRL----------------DDALELFGNMESLG 428
Query: 364 CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ 405
KP T+ + + + D + L +M +KGI P
Sbjct: 429 VKPTAYTYIVFID---YYGKSGDSVSALETFEKMKTKGIAPN 467
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 119/273 (43%), Gaps = 31/273 (11%)
Query: 190 KRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
K N+V+ A +F KF + + ++ +++LI G + + AQ ++ G PD
Sbjct: 761 KHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDV 820
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
+Y ++ Y + ++ KEM C+ + IT IV+ L KA + +AL +Y
Sbjct: 821 ATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYD 880
Query: 308 MKSDDCLTDTS-FYSSLIFILSKAVRFL-------------------IYNTMISSACVRS 347
+ SD + T+ Y LI LSK+ R IYN +I+
Sbjct: 881 LMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAG 940
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407
E A L +++ ++ +PD +T++ + C R+ +G L+ +E+ G+ P
Sbjct: 941 EADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEG---LHYFKELKESGLNPDVV 997
Query: 408 THKMLAEELEKKSLGNAKERIDELLTHATEQRT 440
+ ++ L K R++E L E +T
Sbjct: 998 CYNLIINGLGK------SHRLEEALVLFNEMKT 1024
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 25/232 (10%)
Query: 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEI-------DELSNGYV--SLAAMSTVMR 174
TG + TYN +++A GKS K ++EL KE+ + +++ V L V
Sbjct: 814 TGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDD 873
Query: 175 RLDTR--------------AMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLI 219
LD L+D L K + A ++F D + I+++LI
Sbjct: 874 ALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILI 933
Query: 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279
+G+ K ++D A K M + G PD +Y+ ++ C + + KE++E G
Sbjct: 934 NGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLN 993
Query: 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT-DTSFYSSLIFILSKA 330
P V+ ++++ L K+ ++ EAL ++ +MK+ +T D Y+SLI L A
Sbjct: 994 PDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIA 1045
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 105/254 (41%), Gaps = 22/254 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D ++L+D L K + A+ +D I + ++ LI G + + D A +
Sbjct: 362 DVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELF 421
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
M G P +Y FI++Y + D T ++M+ KG P+++ C +++L KA
Sbjct: 422 GNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKA 481
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
+ EA +++ +K + D+ + YN M+ E A+KL
Sbjct: 482 GRDREAKQIFYGLKDIGLVPDS----------------VTYNMMMKCYSKVGEIDEAIKL 525
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
++ E+ C+PD + R+ + + M+EM K P T+ L
Sbjct: 526 LSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLK---PTVVTYNTLLAG 582
Query: 416 LEKKSLGNAKERID 429
L K G +E I+
Sbjct: 583 LGKN--GKIQEAIE 594
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/352 (21%), Positives = 156/352 (44%), Gaps = 50/352 (14%)
Query: 92 DKVSEILRKRYPSPDKVVEALKCFCFTWAKTQ-TGYMHTPETYNAMVEALGKSKKFGLMW 150
D+V+ I S ++ ++++K F W++ + G++ T+ +V+AL K+ FG +
Sbjct: 327 DRVTYITLLDRFSDNRDLDSVKQF---WSEMEKDGHVPDVVTFTILVDALCKAGNFGEAF 383
Query: 151 E---LVKEIDELSNGYVSLAAMSTVMR--RLDTRAMSVL--MDTLVKRNSVAHAYKVFLK 203
+ ++++ L N + + ++R RLD A+ + M++L + + A+ Y VF+
Sbjct: 384 DTLDVMRDQGILPNLHTYNTLICGLLRVHRLDD-ALELFGNMESLGVKPT-AYTYIVFID 441
Query: 204 F----KDCIS------------LSSQIF--DVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245
+ D +S ++ I + ++ K + A++ + G P
Sbjct: 442 YYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVP 501
Query: 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305
D V+Y ++ Y + + + L EM E GC+P VI +++ L KA ++ EA K++
Sbjct: 502 DSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMF 561
Query: 306 EKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIYNTMISSACVR 346
+MK Y++L+ L K + + +NT+ C
Sbjct: 562 MRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKN 621
Query: 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398
E ALK+ K+ + C PD T+ + ++K+ M + M++++
Sbjct: 622 DEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLV 673
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 17/194 (8%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
YN ++ GK+ + L K M R D + SVL+D L
Sbjct: 929 YNILINGFGKAGEADAACALFKR-------------MVKEGVRPDLKTYSVLVDCLCMVG 975
Query: 193 SVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEM-FQHGFSPDGVS 249
V F + K+ L+ + ++++I+G K+ + + A EM G +PD +
Sbjct: 976 RVDEGLHYFKELKES-GLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYT 1034
Query: 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
Y I + + E+Q G +P+V T ++ + + A VY+ M
Sbjct: 1035 YNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMV 1094
Query: 310 SDDCLTDTSFYSSL 323
+ +T Y L
Sbjct: 1095 TGGFSPNTGTYEQL 1108
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 143/347 (41%), Gaps = 54/347 (15%)
Query: 106 DKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG--- 162
D++ EAL F + +TG++ ++ MVE GL +V + L NG
Sbjct: 190 DRISEALALFGYM---VETGFLEAVALFDQMVE-------IGLT-PVVITFNTLINGLCL 238
Query: 163 ---YVSLAAMSTVM----RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQI 214
+ AA+ M +D +++ + K A + K ++ I I
Sbjct: 239 EGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVI 298
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
+ +I CK AQ EM + G +P+ +Y C I+ +C + L++M
Sbjct: 299 YSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMI 358
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
E+ P V+T ++ A K +++EA K+ ++M DT Y+S+I+ K RF
Sbjct: 359 EREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFD 418
Query: 334 ---LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390
+++ M S PD T + + C KR+ +GM
Sbjct: 419 DAKHMFDLMAS------------------------PDVVTFNTIIDVYCRAKRVDEGM-- 452
Query: 391 LNLMREMLSKGIVPQESTHKMLAEEL-EKKSLGNAKERIDELLTHAT 436
L+RE+ +G+V +T+ L E +L A++ E+++H
Sbjct: 453 -QLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 498
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 96/219 (43%), Gaps = 22/219 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ +I +C+ ++ D + ++E+ + G + +Y I +C + +EM
Sbjct: 435 FNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMI 494
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR-- 332
G P ITC I+++ + +++ EAL+++E ++ DT Y+ +I + K +
Sbjct: 495 SHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVD 554
Query: 333 -----------------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
YN MIS C +S +A L K++++ +PD T+ +
Sbjct: 555 EAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLI 614
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ C + + L+ EM S G T KM+A+
Sbjct: 615 RGCLKAGEIDKS---IELISEMRSNGFSGDAFTIKMVAD 650
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 84/222 (37%), Gaps = 34/222 (15%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK------ 261
I L+ F++LI +C K ++ ++ + GF PD V++ + C E
Sbjct: 137 IPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEAL 196
Query: 262 ---------DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312
F + +M E G P VIT +++ L ++ EA + KM
Sbjct: 197 ALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKG 256
Query: 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372
D + Y T+++ C + +AL L K+EE KPD ++
Sbjct: 257 LHIDV----------------VTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYS 300
Query: 373 RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
+ C D L EML KGI P T+ + +
Sbjct: 301 AIIDRLCKDGHHSDAQY---LFSEMLEKGIAPNVFTYNCMID 339
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 133/316 (42%), Gaps = 48/316 (15%)
Query: 132 TYNAMVEALGKSKKF----GLMWELVKE-IDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
T+NA+++A K KF L +++K ID Y SL + RLD
Sbjct: 257 TFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDK-------- 308
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
A F+ KDC ++ LI G+CK+++ + + +EM G D
Sbjct: 309 --------AKQMFEFMVSKDCFP-DLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 359
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+YT I+ + D K+M G P ++T +I++ L ++ +AL+V++
Sbjct: 360 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD 419
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRS 347
M+ + D Y+++I + KA + + YNTMIS C +
Sbjct: 420 YMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKR 479
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG--MLVLNLMREMLSKGIVPQ 405
A L +K++ED PD T+ + + ++DG L+REM S V
Sbjct: 480 LLQEAYALLKKMKEDGPLPDSGTYNTLI-----RAHLRDGDKAASAELIREMRSCRFVGD 534
Query: 406 ESTHKMLAEELEKKSL 421
ST ++A L L
Sbjct: 535 ASTIGLVANMLHDGRL 550
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 101/236 (42%), Gaps = 20/236 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
V+++ L KR + A+ + K + I IF+ +I CK R D A KEM
Sbjct: 154 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 213
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ V+Y+ I C + L +M EK P+++T ++ A K + E
Sbjct: 214 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 273
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A K+++ M D YN++I+ C+ A ++ + +
Sbjct: 274 AEKLHDDMIKRSIDPD----------------IFTYNSLINGFCMHDRLDKAKQMFEFMV 317
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C PD +T+ +K C KR++DG L REM +G+V T+ L + L
Sbjct: 318 SKDCFPDLDTYNTLIKGFCKSKRVEDGT---ELFREMSHRGLVGDTVTYTTLIQGL 370
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 108/254 (42%), Gaps = 23/254 (9%)
Query: 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267
IS + +++LI+ +C+ + A + +M + G+ P V+ + + YC K
Sbjct: 41 ISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAV 100
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
+ +M E G +P IT T ++H L + EA+ + ++M C + Y ++ L
Sbjct: 101 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 160
Query: 328 SK------AVRFL-------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
K A L I+NT+I S C +AL L +++E +P+
Sbjct: 161 CKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 220
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
T++ + C R D L+ +M+ K I P T L + K+ E++
Sbjct: 221 VTYSSLISCLCSYGRWSDAS---QLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKL 277
Query: 429 -DELLTHATEQRTF 441
D+++ + + F
Sbjct: 278 HDDMIKRSIDPDIF 291
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 22/217 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
F+ L+ K +K D ++M + G S + +Y I +CR L +M
Sbjct: 13 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM 72
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI---FILSKAV 331
+ G +PS++T + +++ K+I +A+ + ++M DT +++LI F+ +KA
Sbjct: 73 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 132
Query: 332 ----------------RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ Y +++ C R + A L K+E + D +
Sbjct: 133 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTII 192
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C + + D LNL +EM +KGI P T+ L
Sbjct: 193 DSLCKYRHVDDA---LNLFKEMETKGIRPNVVTYSSL 226
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 20/198 (10%)
Query: 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK 190
+TYN +++ KSK+ EL +E+ G V DT + L+ L
Sbjct: 326 DTYNTLIKGFCKSKRVEDGTELFREMSH--RGLVG-----------DTVTYTTLIQGLFH 372
Query: 191 RNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249
+A KVF + D + + +L+ G C K + A + M + D
Sbjct: 373 DGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYI 432
Query: 250 YTCFIEHYCREKDFRKVDYT---LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
YT IE C+ KVD + KG KP+V+T ++ L + + EA + +
Sbjct: 433 YTTMIEGMCKAG---KVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLK 489
Query: 307 KMKSDDCLTDTSFYSSLI 324
KMK D L D+ Y++LI
Sbjct: 490 KMKEDGPLPDSGTYNTLI 507
>sp|Q9FME4|PP438_ARATH Pentatricopeptide repeat-containing protein At5g60960,
mitochondrial OS=Arabidopsis thaliana GN=At5g60960 PE=2
SV=1
Length = 521
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/415 (21%), Positives = 173/415 (41%), Gaps = 66/415 (15%)
Query: 68 ESLKLNEQSRISSHALSEDHETDVDKVSEILRKRY----PSPDKVVEALK--------CF 115
ESL NE + S L+ + + + +S+ + P+PD +++ L
Sbjct: 68 ESLDSNEIALSFSKELTGNPDAESQTISQRFNLSFSHITPNPDLILQTLNLSPEAGRAAL 127
Query: 116 CFT-WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMR 174
F W + + + HT ET + V+ G+ K F M E++ + ++ G +A+ ++R
Sbjct: 128 GFNEWLDSNSNFSHTDETVSFFVDYFGRRKDFKGMLEIISKYKGIAGGKTLESAIDRLVR 187
Query: 175 --------------------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214
+ D ++++++ L ++ + A K+ + I I
Sbjct: 188 AGRPKQVTDFFEKMENDYGLKRDKESLTLVVKKLCEKGHASIAEKMVKNTANEIFPDENI 247
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE---HYCREKD-FR---KVD 267
D+LI GWC K D A + EM + GF +Y ++ CR+KD F+ +V+
Sbjct: 248 CDLLISGWCIAEKLDEATRLAGEMSRGGFEIGTKAYNMMLDCVCKLCRKKDPFKLQPEVE 307
Query: 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327
L EM+ +G + T ++++ L K ++ EA+ ++ +M C D Y LI L
Sbjct: 308 KVLLEMEFRGVPRNTETFNVLINNLCKIRRTEEAMTLFGRMGEWGCQPDAETYLVLIRSL 367
Query: 328 SKAVRFLIYNTMISSA---------------------CVRSEEGNALKLRQKIEEDSCKP 366
+A R + MI C +A+ + + ++ + CKP
Sbjct: 368 YQAARIGEGDEMIDKMKSAGYGELLNKKEYYGFLKILCGIERLEHAMSVFKSMKANGCKP 427
Query: 367 DCETHARSL-KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+T+ + KMC + + + L +E KGI +++ ++KK+
Sbjct: 428 GIKTYDLLMGKMCANNQLTRAN----GLYKEAAKKGIAVSPKEYRVDPRFMKKKT 478
>sp|Q9LKU8|PP401_ARATH Pentatricopeptide repeat-containing protein At5g28460
OS=Arabidopsis thaliana GN=At5g28460 PE=2 SV=1
Length = 766
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 108/221 (48%), Gaps = 19/221 (8%)
Query: 197 AYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255
A +V K K+ SL +++LI +C ++ + + +M + G PD ++Y I
Sbjct: 530 AIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLIS 589
Query: 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315
+ + KDF V+ +++M+E G P+V T V+ A ++ EALK+++ M +
Sbjct: 590 FFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVN 649
Query: 316 DTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ +IYN +I++ G AL L+++++ +P+ ET+ +L
Sbjct: 650 PNT---------------VIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETY-NAL 693
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C ++K G +L LM EM+ + P + T ++L E L
Sbjct: 694 FKCLNEK--TQGETLLKLMDEMVEQSCEPNQITMEILMERL 732
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 115/272 (42%), Gaps = 37/272 (13%)
Query: 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN 192
+NA++ LG++ M +LV ++DE V R D + +L++TL K
Sbjct: 297 FNALLSCLGRNMDISRMNDLVLKMDE-------------VKIRPDVVTLGILINTLCKSR 343
Query: 193 SVAHAYKVFLKFK-------DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM-FQHGFS 244
V A +VF + + + I S F+ LI G CK + A++ + M +
Sbjct: 344 RVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCV 403
Query: 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304
P+ V+Y C I+ YCR + M+E KP+V+T ++ + + + A+
Sbjct: 404 PNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVF 463
Query: 305 YEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364
+ M+ + + + Y T+I + C S A+ +K+ E C
Sbjct: 464 FMDMEKEGVKGNV----------------VTYMTLIHACCSVSNVEKAMYWYEKMLEAGC 507
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
PD + + + C +R D + V+ ++E
Sbjct: 508 SPDAKIYYALISGLCQVRRDHDAIRVVEKLKE 539
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 117/272 (43%), Gaps = 58/272 (21%)
Query: 172 VMRRLDT-----RAMSVLMDTLVKRNSVAHAYKVF---LKFKDCISLSSQIFDVLIHG-W 222
V RLD+ + +V++D L++ V A+KV L+ + + D+++H W
Sbjct: 174 VYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVW 233
Query: 223 CKTRKSDYAQKAMKEMFQ-HGFSPDGVSYTCFIEHYC----------------------- 258
+ ++ A+ F HG SP+ V T FI C
Sbjct: 234 KERLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLE 293
Query: 259 ------------REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
R D +++ + +M E +P V+T I+++ L K++++ EAL+V+E
Sbjct: 294 APPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFE 353
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC--VRSEEGNALKLRQKIEEDSC 364
+M+ TD I + ++ F NT+I C R +E L +R K+EE C
Sbjct: 354 QMRGKR--TDDGN-----VIKADSIHF---NTLIDGLCKVGRLKEAEELLVRMKLEE-RC 402
Query: 365 KPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
P+ T+ + C +++ V++ M+E
Sbjct: 403 VPNAVTYNCLIDGYCRAGKLETAKEVVSRMKE 434
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 133/316 (42%), Gaps = 48/316 (15%)
Query: 132 TYNAMVEALGKSKKF----GLMWELVKE-IDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186
T+NA+++A K KF L +++K ID Y SL + RLD
Sbjct: 332 TFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDK-------- 383
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246
A F+ KDC ++ LI G+CK+++ + + +EM G D
Sbjct: 384 --------AKQMFEFMVSKDCFP-DVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 434
Query: 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306
V+YT I+ + D K+M G P ++T +I++ L ++ +AL+V++
Sbjct: 435 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD 494
Query: 307 KMKSDDCLTDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRS 347
M+ + D Y+++I + KA + + YNTMIS C +
Sbjct: 495 YMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKR 554
Query: 348 EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG--MLVLNLMREMLSKGIVPQ 405
A L +K++ED P+ T+ + + ++DG L+REM S V
Sbjct: 555 LLQEAYALLKKMKEDGPLPNSGTYNTLI-----RAHLRDGDKAASAELIREMRSCRFVGD 609
Query: 406 ESTHKMLAEELEKKSL 421
ST ++A L L
Sbjct: 610 ASTIGLVANMLHDGRL 625
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 98/236 (41%), Gaps = 20/236 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
V+++ L KR A + K + I IF+ +I CK R D A KEM
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ V+Y+ I C + L +M EK P+++T ++ A K + E
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A K+Y+ M D YN++++ C+ A ++ + +
Sbjct: 349 AEKLYDDMIKRSIDPD----------------IFTYNSLVNGFCMHDRLDKAKQMFEFMV 392
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C PD T+ +K C KR++DG L REM +G+V T+ L + L
Sbjct: 393 SKDCFPDVVTYNTLIKGFCKSKRVEDGT---ELFREMSHRGLVGDTVTYTTLIQGL 445
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 120/286 (41%), Gaps = 34/286 (11%)
Query: 187 TLVKRNSVAHAYKVFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAM 235
++V+ N + A KF ISL ++ +++LI+ +C+ + A +
Sbjct: 84 SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALL 143
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+M + G+ P V+ + + YC K + +M E G +P IT T ++H L
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK------AVRFL-------------IY 336
+ EA+ + ++M C + Y ++ L K A+ L I+
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIF 263
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
NT+I S C +AL L +++E +P+ T++ + C R D L+ +
Sbjct: 264 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDAS---QLLSD 320
Query: 397 MLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDELLTHATEQRTF 441
M+ K I P T L + K+ A++ D+++ + + F
Sbjct: 321 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIF 366
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 109/248 (43%), Gaps = 22/248 (8%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQ 240
S ++D K +V AY ++ + L + + F L+ G+CK R+ A+ M +
Sbjct: 273 SAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVK 332
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G P+ Y C I +C+ + + L EM+ P V T TI+++ L Q+ E
Sbjct: 333 FGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAE 392
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A ++++KMK++ ++ YN++I C AL L ++
Sbjct: 393 ANRLFQKMKNERIFPSSA----------------TYNSLIHGYCKEYNMEQALDLCSEMT 436
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420
+P+ T + + C+ + +K M L EM KGIVP T+ L + K++
Sbjct: 437 ASGVEPNIITFSTLIDGYCNVRDIKAAM---GLYFEMTIKGIVPDVVTYTALIDAHFKEA 493
Query: 421 LGNAKERI 428
N KE +
Sbjct: 494 --NMKEAL 499
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 117/271 (43%), Gaps = 29/271 (10%)
Query: 166 LAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCK 224
L+ M ++ D ++L++ L + VA A ++F K K+ I SS ++ LIHG+CK
Sbjct: 362 LSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCK 421
Query: 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284
+ A EM G P+ ++++ I+ YC +D + EM KG P V+T
Sbjct: 422 EYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVT 481
Query: 285 CTIVMHALEKAKQIYEALKVYEKM---------KSDDCLTDTSFYSSLIFILSKAVRF-- 333
T ++ A K + EAL++Y M + CL D + LS A+ F
Sbjct: 482 YTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGR---LSVAIDFYQ 538
Query: 334 -----------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382
+ + +I C A + + PD ++ LK +K
Sbjct: 539 ENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEK 598
Query: 383 RMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413
R+ D M+ L +M+ GI+P +++LA
Sbjct: 599 RITDTMM---LQCDMIKTGILPNLLVNQLLA 626
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/288 (19%), Positives = 113/288 (39%), Gaps = 42/288 (14%)
Query: 166 LAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC------------------ 207
L+ ++ ++RR ++ V ++ R V + F+ F+ C
Sbjct: 168 LSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTS 227
Query: 208 --ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
I + I+ + I C+ K + A+K + M +HG P+ +Y+ I+ YC+ + R+
Sbjct: 228 LGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQ 287
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
KE+ P+V+ ++ KA+++ A ++ M + Y+ LI
Sbjct: 288 AYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIH 347
Query: 326 ILSKAVRFL-------------------IYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366
K+ L Y +I+ C+ + A +L QK++ + P
Sbjct: 348 GHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFP 407
Query: 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAE 414
T+ + C + M+ L+L EM + G+ P T L +
Sbjct: 408 SSATYNSLIHGYCKEYNMEQA---LDLCSEMTASGVEPNIITFSTLID 452
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 22/218 (10%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
+++G + R+ D + M G PD Y + ++ + K + L EM G
Sbjct: 170 ILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLG 229
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------------F 325
KP+V TI + L + ++ EA K++E MK L + YS++I +
Sbjct: 230 IKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAY 289
Query: 326 ILSKAV-------RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
L K + +++ T++ C E A L + + P+ + +
Sbjct: 290 GLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGH 349
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
C M + + L+ EM S + P T+ +L L
Sbjct: 350 CKSGNMLEA---VGLLSEMESLNLSPDVFTYTILINGL 384
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 137/316 (43%), Gaps = 36/316 (11%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
+ GY+ T+NA + L K +LV E + +G+VS L
Sbjct: 348 ERGYIPDSSTFNAAMSCLLKGH------DLV-ETCRIFDGFVSRGVKPGFNGYL------ 394
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF--DVLIHGWCKTRKSDYAQKAMKEMFQ 240
VL+ L+ + + +LK L S ++ + +I CK R+ + A + EM
Sbjct: 395 VLVQALLNAQRFSEGDR-YLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQD 453
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
G SP+ V++ F+ Y D +KV L+++ G KP VIT +++++ L +AK+I +
Sbjct: 454 RGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKD 513
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360
A +++M + + YN +I S C + ++KL K++
Sbjct: 514 AFDCFKEMLEWGIEPNE----------------ITYNILIRSCCSTGDTDRSVKLFAKMK 557
Query: 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL-EKK 419
E+ PD + +++ C +++K L++ ML G+ P T+ L + L E
Sbjct: 558 ENGLSPDLYAYNATIQSFCKMRKVKKAE---ELLKTMLRIGLKPDNFTYSTLIKALSESG 614
Query: 420 SLGNAKERIDELLTHA 435
A+E + H
Sbjct: 615 RESEAREMFSSIERHG 630
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 101/217 (46%), Gaps = 25/217 (11%)
Query: 125 GYMHTPETYNAMVEALGKSKKF-------------GLMWELVKEIDELSNGYV---SLAA 168
G + + +YNA+++ L K+++ G+ LV + +GY +
Sbjct: 420 GLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVT-FNTFLSGYSVRGDVKK 478
Query: 169 MSTVMRRL-------DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIH 220
+ V+ +L D S++++ L + + A+ F + + I + +++LI
Sbjct: 479 VHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIR 538
Query: 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280
C T +D + K +M ++G SPD +Y I+ +C+ + +K + LK M G KP
Sbjct: 539 SCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKP 598
Query: 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDT 317
T + ++ AL ++ + EA +++ ++ C+ D+
Sbjct: 599 DNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDS 635
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 20/209 (9%)
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ ++D L K + +A + +D IS + F+ + G+ ++++
Sbjct: 429 NAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLV 488
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300
HGF PD ++++ I CR K+ + KEM E G +P+ IT I++ +
Sbjct: 489 HGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDR 548
Query: 301 ALKVYEKMKSDDCLTDTSFYSSLIF-------------ILSKAVRF------LIYNTMIS 341
++K++ KMK + D Y++ I +L +R Y+T+I
Sbjct: 549 SVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIK 608
Query: 342 SACVRSEEGNALKLRQKIEEDSCKPDCET 370
+ E A ++ IE C PD T
Sbjct: 609 ALSESGRESEAREMFSSIERHGCVPDSYT 637
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 98/237 (41%), Gaps = 25/237 (10%)
Query: 197 AYKVFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI 254
A++V + F KD +L +D +++ + + ++++ + G+ PD ++ +
Sbjct: 304 AFEVLVGFMEKDS-NLQRVGYDAVLYCLSNNSMAKETGQFLRKIGERGYIPDSSTFNAAM 362
Query: 255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL 314
+ D + +G KP +++ AL A++ E + ++M D L
Sbjct: 363 SCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLL 422
Query: 315 TDTSFYSSLIFILSKAVR-------------------FLIYNTMISSACVRSEEGNALKL 355
+ Y+++I L KA R + +NT +S VR + +
Sbjct: 423 SSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGV 482
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+K+ KPD T + + C K +KD + +EML GI P E T+ +L
Sbjct: 483 LEKLLVHGFKPDVITFSLIINCLCRAKEIKDA---FDCFKEMLEWGIEPNEITYNIL 536
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 14/177 (7%)
Query: 134 NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNS 193
+ + AL + L EL+KEI + +GY R+ M VL+ + +
Sbjct: 114 SVLGNALFRKGPLLLSMELLKEIRD--SGY-----------RISDELMCVLIGSWGRLGL 160
Query: 194 VAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252
+ VF + + S+++++ +I K+ D A ++M G PD +Y
Sbjct: 161 AKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNI 220
Query: 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309
I C++ + +K+M+++G +P+V T TI++ A ++ EALK E M+
Sbjct: 221 LIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMR 277
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 70/158 (44%), Gaps = 3/158 (1%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D SVL + L ++ + + ++ + +D +S ++ VLI W + + Y
Sbjct: 109 DQSLKSVLGNALFRKGPLLLSMELLKEIRDSGYRISDELMCVLIGSWGRLGLAKYCNDVF 168
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
++ G P Y I+ + ++M+ GCKP T I++H + K
Sbjct: 169 AQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKK 228
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLI--FILSKAV 331
+ EA+++ ++M+ + + Y+ LI F+++ V
Sbjct: 229 GVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRV 266
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 45/293 (15%)
Query: 158 ELSNGYVSLAAMSTVMR----------RLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC 207
EL NGY M R + + L+D L K + A ++ +
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK- 484
Query: 208 ISLSSQIF--DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265
I L IF + +++G CK+ + A K + E G + D V+YT ++ YC+ + K
Sbjct: 485 IGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDK 544
Query: 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325
LKEM KG +P+++T ++M+ ++ L+ EK+ L +
Sbjct: 545 AQEILKEMLGKGLQPTIVTFNVLMNGF----CLHGMLEDGEKL--------------LNW 586
Query: 326 ILSKAV--RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK----PDCETHARSLKMCC 379
+L+K + +N+++ C+R N LK I +D C PD +T+ +K C
Sbjct: 587 MLAKGIAPNATTFNSLVKQYCIR----NNLKAATAIYKDMCSRGVGPDGKTYENLVKGHC 642
Query: 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE-LEKKSLGNAKERIDEL 431
+ MK+ L +EM KG ST+ +L + L++K A+E D++
Sbjct: 643 KARNMKEAWF---LFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQM 692
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 19/204 (9%)
Query: 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271
S F LI+G+CK A + M Q G SP+ V+YT I+ C+E D + L
Sbjct: 421 SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 480
Query: 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331
EM + G +P++ T +++ L K+ I EA+K+ + ++ DT
Sbjct: 481 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT-------------- 526
Query: 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391
+ Y T++ + C E A ++ +++ +P T + C ++DG +L
Sbjct: 527 --VTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL 584
Query: 392 NLMREMLSKGIVPQESTHKMLAEE 415
N ML+KGI P +T L ++
Sbjct: 585 NW---MLAKGIAPNATTFNSLVKQ 605
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 87/218 (39%), Gaps = 22/218 (10%)
Query: 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273
++ LI G+CK A K EM +PD ++YT I +C+ D + EM
Sbjct: 353 VYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM 412
Query: 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK---- 329
KG +P +T T +++ KA + +A +V+ M C + Y++LI L K
Sbjct: 413 FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL 472
Query: 330 ---------------AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374
YN++++ C A+KL + E D T+
Sbjct: 473 DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 532
Query: 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C M +L +EML KG+ P T +L
Sbjct: 533 MDAYCKSGEMDKAQEIL---KEMLGKGLQPTIVTFNVL 567
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 116/270 (42%), Gaps = 28/270 (10%)
Query: 195 AHAYKVFLKFKD---CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
A A VF +F + C +++S ++++IH C+ + A + M G++PD +SY+
Sbjct: 228 ATAIIVFREFPEVGVCWNVAS--YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYS 285
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ YCR + KV ++ M+ KG KP+ ++ L + ++ EA + + +M
Sbjct: 286 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 345
Query: 312 DCLTDTSFYSSLIFILSK------AVRF-------------LIYNTMISSACVRSEEGNA 352
L DT Y++LI K A +F L Y +IS C + A
Sbjct: 346 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 405
Query: 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
KL ++ +PD T + C MKD V N M+ G P T+ L
Sbjct: 406 GKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHN---HMIQAGCSPNVVTYTTL 462
Query: 413 AEELEKKS-LGNAKERIDELLTHATEQRTF 441
+ L K+ L +A E + E+ + F
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIF 492
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN++V L KS G + E VK + E A ++ DT + LMD K
Sbjct: 493 TYNSIVNGLCKS---GNIEEAVKLVGEFEA-----AGLNA-----DTVTYTTLMDAYCKS 539
Query: 192 NSVAHAYKVFLKFKDCISLSSQ----IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247
+ A ++ K+ + Q F+VL++G+C + +K + M G +P+
Sbjct: 540 GEMDKAQEIL---KEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNA 596
Query: 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307
++ ++ YC + + K+M +G P T ++ KA+ + EA ++++
Sbjct: 597 TTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE 656
Query: 308 MKSDDCLTDTSFYSSLIFILSKAVRFL 334
MK S YS LI K +FL
Sbjct: 657 MKGKGFSVSVSTYSVLIKGFLKRKKFL 683
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 107/241 (44%), Gaps = 20/241 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D V+++ L KR A+ + K + + I++ +I G CK + D A
Sbjct: 220 DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLF 279
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
KEM G P+ V+Y+ I C + L +M E+ P V T + ++ A K
Sbjct: 280 KEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKE 339
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
++ EA K+Y++M S S++ Y+++I+ C+ A ++
Sbjct: 340 GKLVEAEKLYDEM------VKRSIDPSIV----------TYSSLINGFCMHDRLDEAKQM 383
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ + C PD T+ +K C KR+++GM V REM +G+V T+ +L +
Sbjct: 384 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF---REMSQRGLVGNTVTYNILIQG 440
Query: 416 L 416
L
Sbjct: 441 L 441
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 30/221 (13%)
Query: 203 KFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251
KF ISL Q+ + +LI+ +C+ + A + +M + G+ P+ V+ +
Sbjct: 96 KFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLS 155
Query: 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311
+ YC K + + +M G +P+ +T ++H L + EA+ + ++M +
Sbjct: 156 SLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAK 215
Query: 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371
C D + Y +++ C R + A L K+E+ +P +
Sbjct: 216 GCQPD----------------LVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIY 259
Query: 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
+ C K M D LNL +EM +KGI P T+ L
Sbjct: 260 NTIIDGLCKYKHMDDA---LNLFKEMETKGIRPNVVTYSSL 297
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 111/266 (41%), Gaps = 23/266 (8%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAM 235
D S L+D VK + A K++ + K I S + LI+G+C + D A++
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
+ M PD V+Y I+ +C+ K + +EM ++G + +T I++ L +A
Sbjct: 385 EFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQA 444
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355
A +++++M SD + + YNT++ C + A+ +
Sbjct: 445 GDCDMAQEIFKEMVSDGVPPN----------------IMTYNTLLDGLCKNGKLEKAMVV 488
Query: 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415
+ ++ +P T+ ++ C +++DG +L + KG+ P + +
Sbjct: 489 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG---WDLFCNLSLKGVKPDVVAYNTMISG 545
Query: 416 LEKKSLGNAKERIDELLTHATEQRTF 441
+K +KE D L E T
Sbjct: 546 FCRKG---SKEEADALFKEMKEDGTL 568
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 26/228 (11%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI G+CK ++ + + +EM Q G + V+Y I+ + D KEM
Sbjct: 399 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMV 458
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF- 333
G P+++T ++ L K ++ +A+ V+E ++ Y+ +I + KA +
Sbjct: 459 SDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 518
Query: 334 ------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
+ YNTMIS C + + A L ++++ED P+ + +
Sbjct: 519 DGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLI 578
Query: 376 KMCCHKKRMKDG--MLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421
+ R++DG L++EM S G ST ++ L L
Sbjct: 579 -----RARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRL 621
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 14/161 (8%)
Query: 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181
+Q G + TYN +++ L ++ + E+ KE+ VS +M
Sbjct: 423 SQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM-------VSDGVPPNIM------TY 469
Query: 182 SVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240
+ L+D L K + A VF + + + ++++I G CK K + +
Sbjct: 470 NTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSL 529
Query: 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281
G PD V+Y I +CR+ + D KEM+E G P+
Sbjct: 530 KGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 80/194 (41%), Gaps = 14/194 (7%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN +++ K K+ E+ +E+ + G V +T ++L+ L +
Sbjct: 398 TYNTLIKGFCKYKRVEEGMEVFREMSQ--RGLVG-----------NTVTYNILIQGLFQA 444
Query: 192 NSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
A ++F + D + + ++ L+ G CK K + A + + + P +Y
Sbjct: 445 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 504
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
IE C+ + KG KP V+ ++ + EA ++++MK
Sbjct: 505 NIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKE 564
Query: 311 DDCLTDTSFYSSLI 324
D L ++ Y++LI
Sbjct: 565 DGTLPNSGCYNTLI 578
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 137/339 (40%), Gaps = 45/339 (13%)
Query: 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191
TYN ++ + K +E+V+ ++ L D + ++L+ L+ +
Sbjct: 265 TYNTIIRGMCKEGMVDRAFEMVRNLE--------LKGCEP-----DVISYNILLRALLNQ 311
Query: 192 NSVAHAYKVFLK-FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250
K+ K F + + + +LI C+ K + A +K M + G +PD SY
Sbjct: 312 GKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSY 371
Query: 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310
I +CRE L+ M GC P ++ V+ L K + +AL+++ K+
Sbjct: 372 DPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGE 431
Query: 311 DDCLTDTSFYSSLIFIL---SKAVRFL----------------IYNTMISSACVRSEEGN 351
C ++S Y+++ L +R L YN+MIS C
Sbjct: 432 VGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDE 491
Query: 352 ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411
A +L + P T+ L C R++D +N++ M+ G P E+T+ +
Sbjct: 492 AFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDA---INVLESMVGNGCRPNETTYTV 548
Query: 412 LAEEL-------EKKSLGNAKERIDELLTHATEQ--RTF 441
L E + E L N RID + ++ ++ RTF
Sbjct: 549 LIEGIGFAGYRAEAMELANDLVRIDAISEYSFKRLHRTF 587
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 22/217 (10%)
Query: 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274
++ LI+G+CK + D A + + M FSPD V+Y I C L ++
Sbjct: 161 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL 220
Query: 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK----- 329
C+P+VIT TI++ A + EALK+ ++M S D Y+++I + K
Sbjct: 221 SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVD 280
Query: 330 ----AVR----------FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375
VR + YN ++ + + + KL K+ + C P+ T++ +
Sbjct: 281 RAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILI 340
Query: 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412
C ++++ M +L LM+E KG+ P ++ L
Sbjct: 341 TTLCRDGKIEEAMNLLKLMKE---KGLTPDAYSYDPL 374
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 20/204 (9%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
+ H C++ + ++ M + G++PD + T I+ + ++ K + E+ EK
Sbjct: 95 IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKA-VRVMEILEKF 153
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337
+P V +++ K +I +A +V ++M+S D DT + YN
Sbjct: 154 GQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDT----------------VTYN 197
Query: 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREM 397
MI S C R + ALK+ ++ D+C+P T+ ++ + + + L LM EM
Sbjct: 198 IMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEA---LKLMDEM 254
Query: 398 LSKGIVPQESTHKMLAEELEKKSL 421
LS+G+ P T+ + + K+ +
Sbjct: 255 LSRGLKPDMFTYNTIIRGMCKEGM 278
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 23/218 (10%)
Query: 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277
LI G+ R A + M+ + + G PD +Y I +C+ L M+ K
Sbjct: 130 LIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKD 188
Query: 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI------------- 324
P +T I++ +L ++ ALKV ++ SD+C Y+ LI
Sbjct: 189 FSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEAL 248
Query: 325 ----FILSKAVR--FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378
+LS+ ++ YNT+I C A ++ + +E C+PD ++ L+
Sbjct: 249 KLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRAL 308
Query: 379 CHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416
++ + ++G LM +M S+ P T+ +L L
Sbjct: 309 LNQGKWEEGE---KLMTKMFSEKCDPNVVTYSILITTL 343
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 137/324 (42%), Gaps = 43/324 (13%)
Query: 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182
Q G TYN ++ L K K G E D+L N A D+ ++
Sbjct: 438 QQGCAMDVVTYNTILHGLCKRKMLG-------EADKLFNEMTERALFP------DSYTLT 484
Query: 183 VLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241
+L+D K ++ +A ++F K K+ I L ++ L+ G+ K D A++ +M
Sbjct: 485 ILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSK 544
Query: 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301
P +SY+ + C + + EM K KP+V+ C ++ ++ +
Sbjct: 545 EILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDG 604
Query: 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE-GNALKLRQKIE 360
EKM S+ + D Y++LI+ VR E A L +K+E
Sbjct: 605 ESFLEKMISEGFVPDCISYNTLIY-----------------GFVREENMSKAFGLVKKME 647
Query: 361 EDSCK--PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK-MLAEELE 417
E+ PD T+ L C + +MK+ +VL R+M+ +G+ P ST+ M+ +
Sbjct: 648 EEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVL---RKMIERGVNPDRSTYTCMINGFVS 704
Query: 418 KKSLGNAKERIDELLTHATEQRTF 441
+ +L A DE+L QR F
Sbjct: 705 QDNLTEAFRIHDEML-----QRGF 723
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/371 (20%), Positives = 150/371 (40%), Gaps = 48/371 (12%)
Query: 92 DKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWE 151
D V ++L + Y K+ EA + F +K G+ + + NA++ +L + L W
Sbjct: 165 DSVFDLLIRTYVQARKLREAHEAFTLLRSK---GFTVSIDACNALIGSLVRIGWVELAWG 221
Query: 152 LVKEIDELSNG--YVSLAAMSTV------MRRLDTRAMSV----LMDTLVKRNSVAHAYK 199
+ +EI G +L M M ++ T V + +V N++ AY
Sbjct: 222 VYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYS 281
Query: 200 VFLKFKDCISLSSQI-----------FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV 248
++ L + + ++ +I+G CK K + A++ EM + G SPD
Sbjct: 282 SKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDST 341
Query: 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308
+Y + C++ D + + +M+ + P ++ + +M ++ + +AL + +
Sbjct: 342 TYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSV 401
Query: 309 KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368
K + D +IY +I C + A+ LR ++ + C D
Sbjct: 402 KEAGLIPDN----------------VIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDV 445
Query: 369 ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428
T+ L C +K + + + N EM + + P T +L + K LGN + +
Sbjct: 446 VTYNTILHGLCKRKMLGEADKLFN---EMTERALFPDSYTLTILIDGHCK--LGNLQNAM 500
Query: 429 DELLTHATEQR 439
EL E+R
Sbjct: 501 -ELFQKMKEKR 510
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 109/279 (39%), Gaps = 28/279 (10%)
Query: 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ-IFDVLIHGWCKTRKSDYAQKAM 235
D S +M + ++ A F K+ + I+ +LI G+C+ A
Sbjct: 374 DLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLR 433
Query: 236 KEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295
EM Q G + D V+Y + C+ K + D EM E+ P T TI++ K
Sbjct: 434 NEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKL 493
Query: 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-------------------LIY 336
+ A+++++KMK D Y++L+ K + Y
Sbjct: 494 GNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISY 553
Query: 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396
+ ++++ C + A ++ ++ + KP +K C DG + + +
Sbjct: 554 SILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGE---SFLEK 610
Query: 397 MLSKGIVPQESTHKMLA-----EELEKKSLGNAKERIDE 430
M+S+G VP ++ L EE K+ G K+ +E
Sbjct: 611 MISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEE 649
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 86/236 (36%), Gaps = 55/236 (23%)
Query: 204 FKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF-------------------- 243
F +C S + +FD+LI + + RK A +A + GF
Sbjct: 158 FSNCGS-NDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWV 216
Query: 244 ----------SPDGVSYTCF-----IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288
S GV + + C++ KV L ++QEKG P ++T +
Sbjct: 217 ELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTL 276
Query: 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348
+ A + EA ++ M +S ++ YNT+I+ C +
Sbjct: 277 ISAYSSKGLMEEAFELMNAMPGKG-------FSPGVY---------TYNTVINGLCKHGK 320
Query: 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404
A ++ ++ PD T+ L C K + + V + MR S+ +VP
Sbjct: 321 YERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMR---SRDVVP 373
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,384,937
Number of Sequences: 539616
Number of extensions: 6051697
Number of successful extensions: 21817
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 18376
Number of HSP's gapped (non-prelim): 1490
length of query: 441
length of database: 191,569,459
effective HSP length: 121
effective length of query: 320
effective length of database: 126,275,923
effective search space: 40408295360
effective search space used: 40408295360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)