Query 036107
Match_columns 441
No_of_seqs 382 out of 2989
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 09:31:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 9.6E-60 2.1E-64 483.8 40.4 407 5-437 387-843 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.2E-59 1.1E-63 478.4 37.5 393 19-436 370-784 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 6E-59 1.3E-63 473.9 29.3 384 21-433 89-489 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 8E-59 1.7E-63 483.7 29.7 412 5-433 138-652 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 4E-54 8.7E-59 448.4 29.0 388 17-434 49-452 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1.2E-53 2.5E-58 435.1 27.3 381 5-436 175-558 (697)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 1.1E-18 2.5E-23 184.7 36.2 281 129-433 600-898 (899)
8 PRK11788 tetratricopeptide rep 99.8 5.6E-18 1.2E-22 162.1 33.4 297 101-435 44-347 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.8 5.6E-18 1.2E-22 179.4 36.3 389 29-436 373-800 (899)
10 PRK11788 tetratricopeptide rep 99.8 5.4E-18 1.2E-22 162.3 28.1 300 66-407 45-354 (389)
11 KOG4422 Uncharacterized conser 99.7 1.2E-14 2.5E-19 130.0 28.5 252 177-434 206-550 (625)
12 PRK15174 Vi polysaccharide exp 99.7 8.4E-14 1.8E-18 140.6 37.2 371 5-435 4-381 (656)
13 PRK15174 Vi polysaccharide exp 99.6 6.5E-12 1.4E-16 127.0 33.9 294 99-436 49-348 (656)
14 TIGR00990 3a0801s09 mitochondr 99.6 2E-11 4.2E-16 123.6 33.3 368 29-437 137-573 (615)
15 KOG4422 Uncharacterized conser 99.5 2.2E-12 4.8E-17 115.6 22.6 290 132-436 118-463 (625)
16 PRK11447 cellulose synthase su 99.5 1.1E-10 2.3E-15 126.1 38.9 341 68-434 281-699 (1157)
17 PRK11447 cellulose synthase su 99.5 2.7E-11 5.9E-16 130.7 33.0 332 66-433 361-738 (1157)
18 PRK10049 pgaA outer membrane p 99.5 3.2E-10 7E-15 117.1 37.4 374 29-435 25-456 (765)
19 PF13041 PPR_2: PPR repeat fam 99.5 1.2E-13 2.6E-18 89.3 6.4 49 245-293 1-49 (50)
20 TIGR00990 3a0801s09 mitochondr 99.5 3.6E-10 7.7E-15 114.5 34.6 295 98-435 133-496 (615)
21 PRK10747 putative protoheme IX 99.5 3.4E-10 7.3E-15 108.0 31.9 281 105-433 97-388 (398)
22 PF13041 PPR_2: PPR repeat fam 99.5 1.5E-13 3.3E-18 88.8 6.1 50 210-259 1-50 (50)
23 KOG4318 Bicoid mRNA stability 99.5 3.8E-11 8.3E-16 116.7 24.2 227 48-294 17-283 (1088)
24 KOG4626 O-linked N-acetylgluco 99.4 6E-11 1.3E-15 111.2 20.0 306 56-389 116-477 (966)
25 TIGR00540 hemY_coli hemY prote 99.4 2.4E-09 5.3E-14 102.6 30.4 292 103-432 95-396 (409)
26 KOG4626 O-linked N-acetylgluco 99.4 6.4E-10 1.4E-14 104.5 24.6 213 130-379 286-501 (966)
27 PF13429 TPR_15: Tetratricopep 99.3 9.8E-12 2.1E-16 113.1 12.5 260 135-433 13-275 (280)
28 PRK14574 hmsH outer membrane p 99.3 5.9E-09 1.3E-13 106.5 33.7 173 254-432 299-510 (822)
29 PRK10049 pgaA outer membrane p 99.3 2E-08 4.2E-13 104.0 36.4 346 62-436 21-423 (765)
30 PRK10747 putative protoheme IX 99.3 5.8E-09 1.3E-13 99.5 29.8 278 69-392 97-385 (398)
31 PF13429 TPR_15: Tetratricopep 99.3 1.8E-11 4E-16 111.4 12.2 258 97-392 13-272 (280)
32 KOG4318 Bicoid mRNA stability 99.3 1.1E-09 2.3E-14 106.8 24.0 240 118-384 13-287 (1088)
33 PRK14574 hmsH outer membrane p 99.3 1.7E-08 3.6E-13 103.2 33.3 277 139-435 43-396 (822)
34 PRK09782 bacteriophage N4 rece 99.2 1.1E-07 2.3E-12 99.4 36.3 258 129-430 476-735 (987)
35 KOG1155 Anaphase-promoting com 99.2 1.1E-07 2.4E-12 86.9 31.1 295 100-432 235-533 (559)
36 TIGR02521 type_IV_pilW type IV 99.2 2.1E-08 4.5E-13 88.2 26.5 201 129-361 30-231 (234)
37 TIGR00540 hemY_coli hemY prote 99.2 2.9E-08 6.3E-13 95.3 27.7 286 68-392 96-394 (409)
38 PRK09782 bacteriophage N4 rece 99.2 2.3E-07 5E-12 97.0 35.8 303 102-435 386-706 (987)
39 TIGR02521 type_IV_pilW type IV 99.2 4.4E-08 9.5E-13 86.1 26.0 131 179-310 32-163 (234)
40 COG3071 HemY Uncharacterized e 99.2 4E-07 8.8E-12 81.9 31.2 290 104-438 96-393 (400)
41 COG3071 HemY Uncharacterized e 99.1 3.7E-07 8.1E-12 82.1 29.7 282 69-394 97-387 (400)
42 KOG1126 DNA-binding cell divis 99.1 2.9E-08 6.2E-13 94.6 23.7 280 107-435 334-620 (638)
43 COG2956 Predicted N-acetylgluc 99.1 2.7E-07 5.8E-12 80.7 26.1 225 132-389 38-270 (389)
44 PRK12370 invasion protein regu 99.1 1.4E-07 3.1E-12 94.0 28.2 234 104-377 273-518 (553)
45 KOG2076 RNA polymerase III tra 99.1 5.9E-07 1.3E-11 88.6 30.9 323 70-432 153-509 (895)
46 KOG1155 Anaphase-promoting com 99.0 1.1E-06 2.5E-11 80.4 27.8 286 64-389 235-528 (559)
47 PRK12370 invasion protein regu 99.0 1.5E-06 3.3E-11 86.7 30.7 264 128-433 254-533 (553)
48 COG2956 Predicted N-acetylgluc 99.0 1.1E-06 2.4E-11 77.0 25.4 169 133-312 72-244 (389)
49 KOG1840 Kinesin light chain [C 99.0 9.4E-07 2E-11 84.8 27.1 248 179-438 200-482 (508)
50 KOG2002 TPR-containing nuclear 98.9 1.6E-06 3.4E-11 86.3 26.7 96 339-437 652-747 (1018)
51 PF12854 PPR_1: PPR repeat 98.9 2.3E-09 5E-14 62.3 3.9 32 242-273 2-33 (34)
52 KOG1126 DNA-binding cell divis 98.9 4.3E-07 9.2E-12 86.8 21.0 252 145-439 334-590 (638)
53 KOG1840 Kinesin light chain [C 98.9 8.3E-07 1.8E-11 85.2 22.9 249 89-360 196-477 (508)
54 KOG2002 TPR-containing nuclear 98.8 3.1E-06 6.8E-11 84.3 26.1 275 81-390 442-738 (1018)
55 PF12854 PPR_1: PPR repeat 98.8 5.3E-09 1.2E-13 60.8 4.2 34 276-309 1-34 (34)
56 KOG2003 TPR repeat-containing 98.8 3.6E-06 7.8E-11 76.9 23.5 260 139-422 428-710 (840)
57 KOG2076 RNA polymerase III tra 98.8 8.9E-06 1.9E-10 80.5 27.9 361 32-432 152-552 (895)
58 cd05804 StaR_like StaR_like; a 98.8 3.3E-05 7.2E-10 72.9 31.6 278 131-438 7-296 (355)
59 cd05804 StaR_like StaR_like; a 98.8 4.8E-05 1E-09 71.8 31.5 270 138-434 51-335 (355)
60 PF12569 NARP1: NMDA receptor- 98.8 9.8E-06 2.1E-10 78.8 26.4 292 100-435 12-334 (517)
61 KOG1129 TPR repeat-containing 98.8 1.8E-06 4E-11 75.7 18.9 227 134-392 227-453 (478)
62 KOG2003 TPR repeat-containing 98.7 9.9E-06 2.1E-10 74.1 24.1 208 142-384 502-710 (840)
63 PRK11189 lipoprotein NlpI; Pro 98.7 5E-05 1.1E-09 69.5 27.1 210 130-371 64-273 (296)
64 KOG1915 Cell cycle control pro 98.7 0.00018 3.8E-09 66.7 29.8 340 67-434 118-535 (677)
65 KOG1129 TPR repeat-containing 98.7 1.1E-06 2.4E-11 77.0 14.9 231 94-361 225-457 (478)
66 PF12569 NARP1: NMDA receptor- 98.6 3.7E-05 8E-10 74.8 26.2 261 137-436 11-292 (517)
67 PRK11189 lipoprotein NlpI; Pro 98.6 0.00017 3.8E-09 65.9 27.8 229 144-411 40-275 (296)
68 PF04733 Coatomer_E: Coatomer 98.5 1.1E-05 2.4E-10 73.0 18.1 232 177-437 34-267 (290)
69 COG3063 PilF Tfp pilus assembl 98.5 0.00026 5.5E-09 59.6 23.9 170 132-317 37-207 (250)
70 KOG1915 Cell cycle control pro 98.5 0.001 2.2E-08 61.9 29.8 188 101-309 82-271 (677)
71 PF04733 Coatomer_E: Coatomer 98.5 5.1E-06 1.1E-10 75.1 14.9 130 177-310 130-264 (290)
72 KOG0495 HAT repeat protein [RN 98.5 0.00099 2.1E-08 64.3 30.2 333 55-433 515-878 (913)
73 KOG0495 HAT repeat protein [RN 98.5 0.00057 1.2E-08 65.9 28.3 300 70-396 564-879 (913)
74 KOG0547 Translocase of outer m 98.5 0.00081 1.8E-08 62.7 28.0 221 191-436 339-567 (606)
75 COG3063 PilF Tfp pilus assembl 98.4 0.00046 1E-08 58.1 23.9 188 183-389 40-228 (250)
76 TIGR00756 PPR pentatricopeptid 98.4 4.2E-07 9E-12 53.5 4.5 34 335-368 2-35 (35)
77 KOG1173 Anaphase-promoting com 98.4 0.00047 1E-08 65.3 25.5 268 125-419 239-535 (611)
78 KOG1156 N-terminal acetyltrans 98.4 0.0024 5.1E-08 61.7 30.2 380 29-436 51-469 (700)
79 TIGR00756 PPR pentatricopeptid 98.4 6.9E-07 1.5E-11 52.5 4.5 33 249-281 2-34 (35)
80 KOG0547 Translocase of outer m 98.4 5.8E-05 1.3E-09 70.0 18.4 195 133-360 363-564 (606)
81 PF13812 PPR_3: Pentatricopept 98.3 1E-06 2.2E-11 51.4 4.3 29 250-278 4-32 (34)
82 PF13812 PPR_3: Pentatricopept 98.3 8.8E-07 1.9E-11 51.7 3.9 33 213-245 2-34 (34)
83 TIGR03302 OM_YfiO outer membra 98.3 0.00018 3.9E-09 63.6 19.5 170 129-311 32-232 (235)
84 KOG0985 Vesicle coat protein c 98.2 0.001 2.2E-08 67.2 25.1 162 177-383 1103-1264(1666)
85 KOG4340 Uncharacterized conser 98.2 0.00063 1.4E-08 59.4 20.8 291 104-431 22-335 (459)
86 KOG1125 TPR repeat-containing 98.2 0.0003 6.6E-09 66.7 19.9 255 140-430 295-566 (579)
87 KOG1173 Anaphase-promoting com 98.1 0.00082 1.8E-08 63.7 21.4 213 129-380 311-534 (611)
88 PF10037 MRP-S27: Mitochondria 98.1 6E-05 1.3E-09 70.9 14.0 124 207-330 61-186 (429)
89 KOG3785 Uncharacterized conser 98.1 0.0055 1.2E-07 55.0 25.6 184 63-275 29-213 (557)
90 PLN02789 farnesyltranstransfer 98.1 0.0064 1.4E-07 55.9 27.0 215 132-380 39-267 (320)
91 PF08579 RPM2: Mitochondrial r 98.1 4E-05 8.8E-10 56.8 10.0 75 253-327 31-114 (120)
92 KOG1070 rRNA processing protei 98.1 0.0012 2.6E-08 68.9 23.8 229 129-386 1457-1689(1710)
93 PRK04841 transcriptional regul 98.1 0.0063 1.4E-07 65.2 30.8 280 138-437 460-762 (903)
94 KOG1070 rRNA processing protei 98.1 0.0038 8.3E-08 65.4 26.9 234 177-433 1457-1698(1710)
95 KOG1156 N-terminal acetyltrans 98.1 0.012 2.5E-07 57.1 28.6 253 178-439 143-438 (700)
96 KOG4340 Uncharacterized conser 98.1 0.0035 7.6E-08 54.9 22.6 275 57-358 11-335 (459)
97 TIGR03302 OM_YfiO outer membra 98.1 0.00093 2E-08 59.0 20.2 174 211-390 32-225 (235)
98 PF08579 RPM2: Mitochondrial r 98.1 9.1E-05 2E-09 54.9 10.9 78 217-294 30-116 (120)
99 PF01535 PPR: PPR repeat; Int 98.1 5.4E-06 1.2E-10 47.1 3.6 31 334-364 1-31 (31)
100 KOG3617 WD40 and TPR repeat-co 98.1 0.002 4.2E-08 63.9 22.7 309 94-436 728-1110(1416)
101 PF01535 PPR: PPR repeat; Int 98.1 6E-06 1.3E-10 46.9 3.7 25 215-239 3-27 (31)
102 KOG1174 Anaphase-promoting com 98.0 0.0051 1.1E-07 56.4 23.5 269 129-435 231-500 (564)
103 KOG1128 Uncharacterized conser 98.0 0.00095 2.1E-08 65.2 20.1 189 183-398 429-617 (777)
104 KOG3081 Vesicle coat complex C 98.0 0.00046 1E-08 59.3 16.0 122 185-310 144-270 (299)
105 PF10037 MRP-S27: Mitochondria 98.0 8.1E-05 1.7E-09 70.1 12.5 125 241-381 60-186 (429)
106 PRK14720 transcript cleavage f 98.0 0.0077 1.7E-07 62.2 27.2 235 125-379 25-268 (906)
107 COG5010 TadD Flp pilus assembl 98.0 0.00098 2.1E-08 57.3 17.7 161 134-310 70-230 (257)
108 KOG0985 Vesicle coat protein c 98.0 0.013 2.7E-07 59.8 27.4 313 41-431 1038-1366(1666)
109 PF06239 ECSIT: Evolutionarily 98.0 6.6E-05 1.4E-09 62.8 9.2 101 281-384 46-154 (228)
110 KOG3616 Selective LIM binding 97.9 0.0022 4.7E-08 62.8 20.5 185 136-357 738-932 (1636)
111 COG4783 Putative Zn-dependent 97.9 0.0068 1.5E-07 56.8 22.9 151 223-377 317-471 (484)
112 KOG3785 Uncharacterized conser 97.9 0.0073 1.6E-07 54.3 22.0 191 184-395 291-488 (557)
113 PLN02789 farnesyltranstransfer 97.9 0.019 4.2E-07 52.8 26.1 231 179-433 38-300 (320)
114 COG5010 TadD Flp pilus assembl 97.9 0.0011 2.3E-08 57.1 15.6 174 83-276 58-231 (257)
115 PRK15179 Vi polysaccharide bio 97.9 0.0014 3.1E-08 66.4 18.9 131 177-310 85-216 (694)
116 PRK10370 formate-dependent nit 97.8 0.0014 3E-08 55.9 16.1 119 143-276 52-173 (198)
117 PRK15179 Vi polysaccharide bio 97.8 0.0029 6.2E-08 64.3 20.4 149 125-289 81-229 (694)
118 KOG1174 Anaphase-promoting com 97.8 0.025 5.5E-07 52.0 25.0 286 63-392 201-495 (564)
119 KOG1128 Uncharacterized conser 97.8 0.00072 1.6E-08 66.0 15.1 193 87-310 394-615 (777)
120 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00078 1.7E-08 63.2 15.0 127 177-309 168-295 (395)
121 PRK04841 transcriptional regul 97.8 0.067 1.5E-06 57.4 31.6 277 135-435 414-720 (903)
122 PF06239 ECSIT: Evolutionarily 97.8 0.00034 7.5E-09 58.6 10.8 102 209-310 44-167 (228)
123 KOG2047 mRNA splicing factor [ 97.8 0.045 9.7E-07 53.3 28.7 305 93-425 388-713 (835)
124 KOG3616 Selective LIM binding 97.8 0.0048 1E-07 60.5 19.6 138 253-431 738-875 (1636)
125 COG4783 Putative Zn-dependent 97.8 0.029 6.3E-07 52.8 24.0 217 135-389 207-429 (484)
126 PRK15359 type III secretion sy 97.7 0.0038 8.2E-08 50.3 16.2 99 177-276 23-121 (144)
127 PRK10370 formate-dependent nit 97.7 0.0022 4.9E-08 54.7 15.5 120 191-312 52-174 (198)
128 PRK15359 type III secretion sy 97.7 0.0014 3.1E-08 52.8 13.6 106 130-251 24-129 (144)
129 KOG3617 WD40 and TPR repeat-co 97.7 0.029 6.2E-07 56.1 24.3 178 66-273 810-993 (1416)
130 TIGR02552 LcrH_SycD type III s 97.7 0.0023 5E-08 50.9 14.4 95 180-275 19-113 (135)
131 PF09976 TPR_21: Tetratricopep 97.7 0.0027 5.9E-08 51.2 14.8 127 178-307 12-143 (145)
132 KOG2376 Signal recognition par 97.7 0.056 1.2E-06 52.1 29.8 113 64-204 20-136 (652)
133 PF09976 TPR_21: Tetratricopep 97.7 0.0045 9.7E-08 50.0 15.8 113 215-332 15-133 (145)
134 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0026 5.5E-08 59.9 15.3 117 211-333 168-284 (395)
135 TIGR02552 LcrH_SycD type III s 97.6 0.003 6.4E-08 50.2 13.7 107 130-252 17-123 (135)
136 PRK14720 transcript cleavage f 97.6 0.02 4.3E-07 59.3 21.8 218 177-417 30-268 (906)
137 KOG3081 Vesicle coat complex C 97.5 0.051 1.1E-06 47.2 23.6 175 233-433 94-269 (299)
138 KOG2376 Signal recognition par 97.5 0.11 2.4E-06 50.1 25.7 305 63-389 117-512 (652)
139 KOG2053 Mitochondrial inherita 97.5 0.16 3.5E-06 51.4 32.1 63 372-435 440-502 (932)
140 KOG2047 mRNA splicing factor [ 97.5 0.13 2.8E-06 50.2 28.4 172 100-294 110-293 (835)
141 PF05843 Suf: Suppressor of fo 97.4 0.0029 6.4E-08 57.2 12.7 132 131-276 2-136 (280)
142 PF05843 Suf: Suppressor of fo 97.4 0.0053 1.1E-07 55.6 14.1 130 179-311 2-136 (280)
143 KOG1125 TPR repeat-containing 97.4 0.019 4.1E-07 55.0 17.8 246 104-387 297-561 (579)
144 KOG3060 Uncharacterized conser 97.4 0.076 1.6E-06 45.8 21.5 158 143-311 25-183 (289)
145 cd00189 TPR Tetratricopeptide 97.4 0.0045 9.7E-08 44.9 11.1 92 217-310 5-96 (100)
146 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.013 2.9E-07 45.0 13.3 94 183-276 7-105 (119)
147 cd00189 TPR Tetratricopeptide 97.3 0.0053 1.1E-07 44.5 10.6 91 184-275 6-96 (100)
148 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.014 3E-07 44.9 13.3 101 131-242 3-106 (119)
149 KOG1127 TPR repeat-containing 97.2 0.098 2.1E-06 53.6 20.9 179 76-274 476-657 (1238)
150 KOG1914 mRNA cleavage and poly 97.2 0.24 5.1E-06 47.5 23.2 175 194-386 347-528 (656)
151 KOG2053 Mitochondrial inherita 97.1 0.41 8.9E-06 48.7 26.2 225 140-401 19-256 (932)
152 KOG3060 Uncharacterized conser 97.1 0.17 3.8E-06 43.7 21.8 189 107-312 27-221 (289)
153 PF03704 BTAD: Bacterial trans 97.0 0.021 4.5E-07 46.1 12.8 58 215-273 65-122 (146)
154 PF12895 Apc3: Anaphase-promot 97.0 0.0011 2.4E-08 47.8 4.7 80 226-307 3-83 (84)
155 PF12921 ATP13: Mitochondrial 97.0 0.013 2.8E-07 45.7 10.7 54 242-295 47-101 (126)
156 PF14938 SNAP: Soluble NSF att 97.0 0.23 5E-06 45.1 20.5 229 132-413 37-275 (282)
157 CHL00033 ycf3 photosystem I as 97.0 0.028 6.1E-07 46.6 13.2 63 248-310 36-100 (168)
158 PF03704 BTAD: Bacterial trans 97.0 0.042 9.1E-07 44.3 13.8 118 293-411 17-141 (146)
159 PF13170 DUF4003: Protein of u 96.9 0.091 2E-06 47.7 17.0 158 228-403 78-254 (297)
160 PLN03088 SGT1, suppressor of 96.9 0.022 4.7E-07 53.6 13.4 102 138-255 10-111 (356)
161 CHL00033 ycf3 photosystem I as 96.9 0.026 5.7E-07 46.8 12.4 83 130-223 35-117 (168)
162 PRK02603 photosystem I assembl 96.9 0.055 1.2E-06 45.0 14.3 92 130-232 35-126 (172)
163 PRK02603 photosystem I assembl 96.9 0.072 1.6E-06 44.3 14.8 86 177-263 34-122 (172)
164 PF12895 Apc3: Anaphase-promot 96.8 0.0048 1E-07 44.4 6.6 77 192-271 3-82 (84)
165 KOG1914 mRNA cleavage and poly 96.8 0.51 1.1E-05 45.3 29.2 161 228-389 309-493 (656)
166 KOG4162 Predicted calmodulin-b 96.8 0.71 1.5E-05 46.3 31.9 202 87-309 319-540 (799)
167 KOG3941 Intermediate in Toll s 96.8 0.017 3.7E-07 50.4 10.1 105 245-384 65-174 (406)
168 PF14559 TPR_19: Tetratricopep 96.7 0.0065 1.4E-07 41.6 6.5 62 190-253 3-64 (68)
169 PF12921 ATP13: Mitochondrial 96.7 0.031 6.8E-07 43.5 10.8 100 281-418 1-100 (126)
170 PF07079 DUF1347: Protein of u 96.7 0.6 1.3E-05 44.0 29.3 149 68-224 18-179 (549)
171 PF07079 DUF1347: Protein of u 96.6 0.61 1.3E-05 43.9 20.5 244 188-437 16-329 (549)
172 KOG2041 WD40 repeat protein [G 96.6 0.87 1.9E-05 45.2 21.3 212 72-310 637-850 (1189)
173 PRK10866 outer membrane biogen 96.6 0.4 8.7E-06 42.3 18.0 54 339-392 181-236 (243)
174 KOG4162 Predicted calmodulin-b 96.5 0.73 1.6E-05 46.2 20.7 128 180-310 652-782 (799)
175 PF14559 TPR_19: Tetratricopep 96.5 0.014 3E-07 39.9 6.8 52 259-311 3-54 (68)
176 PLN03088 SGT1, suppressor of 96.5 0.072 1.6E-06 50.1 13.6 101 186-289 10-110 (356)
177 PF04840 Vps16_C: Vps16, C-ter 96.5 0.69 1.5E-05 42.6 21.7 84 214-307 179-262 (319)
178 smart00299 CLH Clathrin heavy 96.3 0.39 8.5E-06 38.3 15.4 41 218-259 13-53 (140)
179 PF04840 Vps16_C: Vps16, C-ter 96.3 0.84 1.8E-05 42.1 26.1 105 249-389 179-283 (319)
180 KOG3941 Intermediate in Toll s 96.3 0.029 6.3E-07 49.0 9.0 102 209-310 64-187 (406)
181 PRK10153 DNA-binding transcrip 96.3 0.39 8.4E-06 47.5 17.9 137 124-276 331-482 (517)
182 PF08631 SPO22: Meiosis protei 96.3 0.82 1.8E-05 41.4 23.3 225 188-431 3-271 (278)
183 KOG0548 Molecular co-chaperone 96.3 1.1 2.5E-05 43.0 23.4 240 65-331 11-305 (539)
184 KOG2041 WD40 repeat protein [G 96.3 1.1 2.3E-05 44.6 19.8 80 213-306 797-876 (1189)
185 PF13432 TPR_16: Tetratricopep 96.3 0.027 6E-07 38.0 7.1 53 187-239 6-58 (65)
186 PF14938 SNAP: Soluble NSF att 96.3 0.54 1.2E-05 42.7 17.6 153 262-433 89-261 (282)
187 PRK10866 outer membrane biogen 96.2 0.78 1.7E-05 40.5 18.9 196 218-434 38-240 (243)
188 COG3898 Uncharacterized membra 96.2 1.1 2.3E-05 41.5 24.4 267 128-441 116-398 (531)
189 PRK15363 pathogenicity island 96.2 0.15 3.2E-06 41.0 11.6 88 220-310 43-131 (157)
190 PF12688 TPR_5: Tetratrico pep 96.1 0.25 5.4E-06 38.1 12.3 105 139-258 10-117 (120)
191 PRK10153 DNA-binding transcrip 96.1 0.54 1.2E-05 46.5 17.7 134 177-312 336-483 (517)
192 PF12688 TPR_5: Tetratrico pep 96.0 0.38 8.1E-06 37.1 12.8 52 259-310 13-66 (120)
193 PF13432 TPR_16: Tetratricopep 95.9 0.048 1E-06 36.8 7.0 52 257-309 7-58 (65)
194 PRK15363 pathogenicity island 95.9 0.69 1.5E-05 37.3 14.3 92 184-276 41-132 (157)
195 PF08631 SPO22: Meiosis protei 95.9 1.3 2.8E-05 40.1 24.2 210 131-358 37-271 (278)
196 PF09205 DUF1955: Domain of un 95.8 0.68 1.5E-05 35.9 13.6 134 260-403 15-152 (161)
197 KOG2796 Uncharacterized conser 95.7 0.33 7.1E-06 42.3 12.4 144 214-376 179-327 (366)
198 KOG1127 TPR repeat-containing 95.7 0.6 1.3E-05 48.2 16.0 162 131-310 493-658 (1238)
199 PRK10803 tol-pal system protei 95.7 0.24 5.3E-06 44.2 12.3 98 212-311 143-246 (263)
200 PRK10803 tol-pal system protei 95.7 0.25 5.5E-06 44.1 12.3 99 131-240 144-245 (263)
201 COG5107 RNA14 Pre-mRNA 3'-end 95.6 0.67 1.5E-05 43.6 14.8 145 212-379 397-546 (660)
202 PF13414 TPR_11: TPR repeat; P 95.6 0.085 1.8E-06 36.0 7.3 63 247-310 3-66 (69)
203 KOG0624 dsRNA-activated protei 95.6 1.8 3.8E-05 39.4 21.0 234 138-389 114-362 (504)
204 PF04053 Coatomer_WDAD: Coatom 95.6 0.51 1.1E-05 45.6 14.8 157 140-358 271-427 (443)
205 PF09205 DUF1955: Domain of un 95.6 0.82 1.8E-05 35.4 15.4 139 142-314 14-152 (161)
206 KOG0624 dsRNA-activated protei 95.4 2 4.4E-05 39.1 26.0 305 100-438 46-373 (504)
207 KOG0553 TPR repeat-containing 95.3 1.5 3.2E-05 39.2 15.3 93 223-319 92-184 (304)
208 PF13414 TPR_11: TPR repeat; P 95.3 0.11 2.4E-06 35.4 7.0 60 179-238 4-64 (69)
209 PF10300 DUF3808: Protein of u 95.2 0.91 2E-05 44.5 15.5 171 131-310 189-375 (468)
210 KOG2796 Uncharacterized conser 95.1 1.9 4.1E-05 37.8 14.9 145 177-324 176-326 (366)
211 PF13424 TPR_12: Tetratricopep 95.0 0.086 1.9E-06 37.1 6.0 62 248-309 6-73 (78)
212 PF04053 Coatomer_WDAD: Coatom 95.0 0.89 1.9E-05 43.9 14.5 133 130-307 295-427 (443)
213 KOG0548 Molecular co-chaperone 94.9 4 8.6E-05 39.4 26.7 341 28-389 11-413 (539)
214 KOG0553 TPR repeat-containing 94.6 0.59 1.3E-05 41.6 10.8 127 187-317 90-221 (304)
215 PF13424 TPR_12: Tetratricopep 94.5 0.18 3.9E-06 35.4 6.5 67 282-360 5-73 (78)
216 PF13281 DUF4071: Domain of un 94.4 4.4 9.6E-05 38.0 20.5 171 177-362 140-334 (374)
217 PF13525 YfiO: Outer membrane 94.4 2.9 6.3E-05 35.8 16.8 55 222-276 15-71 (203)
218 PF13371 TPR_9: Tetratricopept 94.3 0.29 6.3E-06 33.7 7.2 55 221-276 4-58 (73)
219 smart00299 CLH Clathrin heavy 94.3 2.1 4.6E-05 34.0 16.0 114 178-307 7-121 (140)
220 PF13170 DUF4003: Protein of u 94.3 4.1 8.9E-05 37.1 16.7 167 72-253 35-223 (297)
221 KOG1538 Uncharacterized conser 94.2 6.5 0.00014 39.0 20.3 82 282-390 747-839 (1081)
222 KOG1538 Uncharacterized conser 94.1 0.68 1.5E-05 45.5 11.1 89 178-276 747-846 (1081)
223 KOG2280 Vacuolar assembly/sort 94.0 7.7 0.00017 39.2 19.9 251 129-429 506-793 (829)
224 PF13371 TPR_9: Tetratricopept 93.7 0.34 7.3E-06 33.4 6.6 57 255-312 3-59 (73)
225 PF13281 DUF4071: Domain of un 93.7 6.1 0.00013 37.1 21.2 170 130-312 141-335 (374)
226 PF13525 YfiO: Outer membrane 93.6 4.2 9.1E-05 34.8 17.5 154 138-311 13-170 (203)
227 PF10602 RPN7: 26S proteasome 93.6 0.8 1.7E-05 38.2 9.6 97 335-431 38-138 (177)
228 PLN03098 LPA1 LOW PSII ACCUMUL 93.6 1.3 2.8E-05 42.1 11.8 64 211-276 74-141 (453)
229 KOG1920 IkappaB kinase complex 93.5 4 8.7E-05 43.3 15.9 93 208-310 931-1027(1265)
230 KOG2114 Vacuolar assembly/sort 93.3 2 4.3E-05 43.7 13.0 151 131-308 335-489 (933)
231 PF07035 Mic1: Colon cancer-as 93.3 4 8.6E-05 33.5 15.6 135 232-396 14-148 (167)
232 PF10300 DUF3808: Protein of u 93.0 9.2 0.0002 37.5 17.3 167 250-438 191-379 (468)
233 PF07035 Mic1: Colon cancer-as 93.0 4.4 9.6E-05 33.2 13.6 130 119-276 18-149 (167)
234 COG4235 Cytochrome c biogenesi 92.8 6.9 0.00015 35.1 15.1 101 209-311 153-256 (287)
235 COG3629 DnrI DNA-binding trans 92.7 1.3 2.8E-05 39.6 10.0 78 179-256 154-236 (280)
236 KOG1585 Protein required for f 92.4 6.9 0.00015 34.0 18.1 213 130-392 31-251 (308)
237 COG3629 DnrI DNA-binding trans 92.0 8 0.00017 34.7 14.0 98 319-417 139-238 (280)
238 PLN03098 LPA1 LOW PSII ACCUMUL 91.9 3.1 6.7E-05 39.7 11.8 64 177-241 74-141 (453)
239 PRK15331 chaperone protein Sic 91.6 1.9 4.2E-05 35.0 8.8 86 223-310 48-133 (165)
240 COG1729 Uncharacterized protei 91.3 3.6 7.9E-05 36.3 10.9 98 213-311 143-244 (262)
241 PF13929 mRNA_stabil: mRNA sta 91.1 6.8 0.00015 35.1 12.4 63 209-271 199-262 (292)
242 PF13512 TPR_18: Tetratricopep 91.1 3.3 7.1E-05 32.9 9.5 74 187-260 19-95 (142)
243 PF10602 RPN7: 26S proteasome 90.9 5.6 0.00012 33.1 11.4 96 213-310 37-141 (177)
244 KOG1920 IkappaB kinase complex 90.6 27 0.0006 37.5 18.3 28 131-158 791-820 (1265)
245 COG1747 Uncharacterized N-term 90.5 18 0.00038 35.2 15.3 166 209-392 63-229 (711)
246 PF00637 Clathrin: Region in C 90.5 0.046 9.9E-07 43.9 -1.3 53 254-306 14-66 (143)
247 COG4105 ComL DNA uptake lipopr 90.5 12 0.00025 33.0 18.9 168 223-396 45-232 (254)
248 COG4235 Cytochrome c biogenesi 90.4 13 0.00028 33.4 15.9 111 177-290 155-268 (287)
249 PF13929 mRNA_stabil: mRNA sta 90.2 13 0.00029 33.3 17.2 136 191-326 141-287 (292)
250 COG4700 Uncharacterized protei 90.0 10 0.00022 31.6 20.3 125 244-388 86-213 (251)
251 COG5107 RNA14 Pre-mRNA 3'-end 89.9 19 0.00041 34.4 24.4 81 177-259 41-121 (660)
252 KOG2610 Uncharacterized conser 89.8 13 0.00029 33.9 13.1 153 140-307 113-272 (491)
253 KOG2114 Vacuolar assembly/sort 89.8 27 0.00058 36.1 18.1 166 130-309 283-458 (933)
254 KOG0543 FKBP-type peptidyl-pro 89.6 8.7 0.00019 36.0 12.2 122 186-310 216-354 (397)
255 KOG4570 Uncharacterized conser 89.3 8.1 0.00018 34.9 11.3 103 207-311 59-164 (418)
256 PRK15331 chaperone protein Sic 89.1 5.3 0.00011 32.5 9.3 88 188-276 47-134 (165)
257 PF00637 Clathrin: Region in C 88.5 0.041 8.8E-07 44.2 -3.1 85 218-309 13-97 (143)
258 PF10366 Vps39_1: Vacuolar sor 88.3 6.4 0.00014 29.7 8.9 65 286-361 3-67 (108)
259 COG4105 ComL DNA uptake lipopr 88.2 18 0.00038 31.9 20.8 175 248-436 36-234 (254)
260 PF09613 HrpB1_HrpK: Bacterial 87.8 13 0.00029 30.1 12.5 116 178-301 7-128 (160)
261 KOG4570 Uncharacterized conser 87.3 4 8.8E-05 36.7 8.2 99 177-277 63-165 (418)
262 cd00923 Cyt_c_Oxidase_Va Cytoc 87.1 5.2 0.00011 29.2 7.2 62 227-290 22-84 (103)
263 KOG0543 FKBP-type peptidyl-pro 86.9 25 0.00055 33.0 13.4 133 139-275 217-354 (397)
264 PF04184 ST7: ST7 protein; In 86.5 22 0.00048 34.5 13.1 75 216-290 263-339 (539)
265 PF13428 TPR_14: Tetratricopep 86.4 2.9 6.2E-05 25.4 5.2 32 131-162 2-33 (44)
266 KOG1585 Protein required for f 86.2 22 0.00048 31.1 14.0 205 185-430 38-251 (308)
267 PF13176 TPR_7: Tetratricopept 86.0 1.8 3.9E-05 25.0 3.9 25 336-360 2-26 (36)
268 PF13176 TPR_7: Tetratricopept 85.8 2.1 4.5E-05 24.7 4.1 26 284-309 1-26 (36)
269 COG3118 Thioredoxin domain-con 85.6 27 0.00058 31.5 15.5 122 187-311 143-265 (304)
270 PF13762 MNE1: Mitochondrial s 85.5 17 0.00037 29.0 12.4 100 271-381 26-128 (145)
271 PF13428 TPR_14: Tetratricopep 85.3 3 6.5E-05 25.3 4.8 26 215-240 4-29 (44)
272 PF02284 COX5A: Cytochrome c o 85.2 8.4 0.00018 28.5 7.6 47 230-276 28-74 (108)
273 KOG4555 TPR repeat-containing 85.1 16 0.00035 28.5 10.2 89 139-242 52-145 (175)
274 PF13762 MNE1: Mitochondrial s 84.8 18 0.0004 28.8 11.2 102 307-424 27-133 (145)
275 PF02284 COX5A: Cytochrome c o 84.5 13 0.00029 27.4 8.3 42 355-396 32-73 (108)
276 PF04184 ST7: ST7 protein; In 84.3 43 0.00092 32.6 16.9 66 248-313 260-326 (539)
277 KOG0276 Vesicle coat complex C 84.1 13 0.00028 36.8 10.5 131 181-359 617-747 (794)
278 COG1729 Uncharacterized protei 84.1 30 0.00065 30.7 12.1 98 132-241 144-244 (262)
279 KOG0276 Vesicle coat complex C 83.3 20 0.00043 35.6 11.4 149 69-273 599-747 (794)
280 COG4455 ImpE Protein of avirul 83.2 7.9 0.00017 33.1 7.7 79 336-416 4-82 (273)
281 COG4700 Uncharacterized protei 82.6 28 0.0006 29.2 17.6 125 179-305 90-216 (251)
282 KOG4555 TPR repeat-containing 82.5 21 0.00046 27.8 11.2 90 187-277 52-145 (175)
283 COG4649 Uncharacterized protei 82.2 27 0.00059 28.8 13.9 139 129-280 58-200 (221)
284 KOG2610 Uncharacterized conser 82.1 42 0.0009 30.9 16.1 155 190-359 115-273 (491)
285 PRK10564 maltose regulon perip 81.9 3.7 7.9E-05 36.9 5.7 51 311-376 250-300 (303)
286 KOG1130 Predicted G-alpha GTPa 81.9 26 0.00056 33.1 11.1 245 186-436 25-345 (639)
287 PF11207 DUF2989: Protein of u 81.6 19 0.00041 30.5 9.4 73 228-301 122-197 (203)
288 PF11207 DUF2989: Protein of u 80.8 18 0.00039 30.6 9.0 81 344-426 118-198 (203)
289 COG3118 Thioredoxin domain-con 80.6 43 0.00094 30.2 15.9 141 139-297 143-287 (304)
290 PF02259 FAT: FAT domain; Int 79.8 52 0.0011 30.6 17.7 53 185-240 5-57 (352)
291 PF13374 TPR_10: Tetratricopep 79.6 5.3 0.00012 23.4 4.4 29 282-310 2-30 (42)
292 PF13374 TPR_10: Tetratricopep 79.6 4.8 0.0001 23.6 4.2 25 249-273 4-28 (42)
293 PF13512 TPR_18: Tetratricopep 79.2 30 0.00065 27.5 12.6 53 224-276 22-76 (142)
294 COG3898 Uncharacterized membra 79.1 58 0.0013 30.7 22.6 228 191-430 97-353 (531)
295 PF09613 HrpB1_HrpK: Bacterial 78.7 34 0.00074 27.8 13.1 49 224-276 22-73 (160)
296 PHA02875 ankyrin repeat protei 77.4 32 0.0007 33.1 11.3 150 185-367 6-162 (413)
297 cd00280 TRFH Telomeric Repeat 77.4 32 0.00068 28.7 9.2 65 290-359 119-183 (200)
298 KOG1586 Protein required for f 77.2 49 0.0011 28.8 14.9 24 344-367 165-188 (288)
299 KOG1464 COP9 signalosome, subu 76.9 54 0.0012 29.2 17.9 242 103-356 38-326 (440)
300 PRK11906 transcriptional regul 74.5 87 0.0019 30.4 14.7 152 104-272 270-432 (458)
301 TIGR02561 HrpB1_HrpK type III 74.0 44 0.00096 26.8 11.3 49 191-241 23-73 (153)
302 KOG2582 COP9 signalosome, subu 73.5 79 0.0017 29.5 17.3 216 179-401 103-346 (422)
303 PF00515 TPR_1: Tetratricopept 73.4 12 0.00026 20.8 4.5 30 131-160 2-31 (34)
304 PF00515 TPR_1: Tetratricopept 72.7 12 0.00026 20.8 4.4 28 283-310 2-29 (34)
305 PHA02875 ankyrin repeat protei 72.3 94 0.002 29.8 14.2 188 182-406 36-230 (413)
306 PF11838 ERAP1_C: ERAP1-like C 71.5 84 0.0018 28.9 15.8 86 228-316 146-236 (324)
307 COG3947 Response regulator con 71.3 80 0.0017 28.6 12.0 58 215-273 282-339 (361)
308 PF04097 Nic96: Nup93/Nic96; 70.9 1.3E+02 0.0028 30.9 21.6 28 406-433 500-532 (613)
309 cd00923 Cyt_c_Oxidase_Va Cytoc 70.6 40 0.00086 24.8 9.3 50 262-311 22-71 (103)
310 PF11848 DUF3368: Domain of un 70.4 15 0.00033 22.9 4.7 29 261-289 16-44 (48)
311 COG4455 ImpE Protein of avirul 70.0 29 0.00063 29.8 7.5 75 133-221 4-81 (273)
312 COG1747 Uncharacterized N-term 69.9 1.2E+02 0.0025 29.9 19.0 164 129-311 65-234 (711)
313 TIGR03504 FimV_Cterm FimV C-te 69.8 13 0.00027 22.8 4.1 20 255-274 7-26 (44)
314 COG3947 Response regulator con 69.0 90 0.0019 28.3 16.7 74 336-410 282-357 (361)
315 KOG2280 Vacuolar assembly/sort 68.9 1.5E+02 0.0032 30.7 23.7 84 337-433 688-771 (829)
316 PF11848 DUF3368: Domain of un 68.9 22 0.00047 22.2 5.1 31 224-254 14-44 (48)
317 KOG1550 Extracellular protein 68.6 1.4E+02 0.003 30.2 17.4 187 72-279 228-429 (552)
318 PF13431 TPR_17: Tetratricopep 68.5 9.2 0.0002 21.7 3.2 22 177-198 12-33 (34)
319 KOG0550 Molecular chaperone (D 68.4 1.1E+02 0.0024 29.1 17.6 177 187-384 178-373 (486)
320 KOG1130 Predicted G-alpha GTPa 68.3 85 0.0018 29.9 10.7 131 180-310 197-343 (639)
321 cd00280 TRFH Telomeric Repeat 67.3 45 0.00097 27.8 7.9 47 194-240 85-139 (200)
322 COG4649 Uncharacterized protei 67.0 73 0.0016 26.4 15.4 128 188-316 68-201 (221)
323 KOG2066 Vacuolar assembly/sort 67.0 1.6E+02 0.0036 30.5 21.6 147 70-240 370-533 (846)
324 KOG1586 Protein required for f 66.5 90 0.0019 27.3 11.7 22 258-279 165-186 (288)
325 COG5108 RPO41 Mitochondrial DN 65.9 41 0.00089 33.9 8.7 74 183-259 33-115 (1117)
326 TIGR03504 FimV_Cterm FimV C-te 65.9 13 0.00027 22.8 3.5 27 287-313 4-30 (44)
327 KOG2063 Vacuolar assembly/sort 65.8 1.3E+02 0.0029 32.0 12.8 117 214-330 506-639 (877)
328 PF07575 Nucleopor_Nup85: Nup8 65.3 48 0.001 33.6 9.7 64 245-310 403-466 (566)
329 TIGR02561 HrpB1_HrpK type III 65.1 71 0.0015 25.7 13.4 25 336-360 96-120 (153)
330 KOG2908 26S proteasome regulat 64.9 1.1E+02 0.0024 28.3 10.5 68 251-318 79-156 (380)
331 PF07719 TPR_2: Tetratricopept 64.8 21 0.00046 19.5 4.5 30 131-160 2-31 (34)
332 KOG1464 COP9 signalosome, subu 64.6 1.1E+02 0.0023 27.4 16.6 188 190-387 39-250 (440)
333 COG2178 Predicted RNA-binding 64.4 84 0.0018 26.5 9.0 95 215-310 32-149 (204)
334 KOG4077 Cytochrome c oxidase, 64.2 27 0.00058 27.0 5.6 42 355-396 71-112 (149)
335 PF07163 Pex26: Pex26 protein; 64.0 1.1E+02 0.0023 27.6 10.0 87 182-270 87-181 (309)
336 PF11663 Toxin_YhaV: Toxin wit 63.6 7.8 0.00017 30.2 2.8 23 295-317 108-130 (140)
337 PF11846 DUF3366: Domain of un 63.1 25 0.00055 29.6 6.3 35 401-435 139-173 (193)
338 COG0735 Fur Fe2+/Zn2+ uptake r 62.3 56 0.0012 26.1 7.7 67 303-386 7-73 (145)
339 PF11663 Toxin_YhaV: Toxin wit 61.4 8.2 0.00018 30.1 2.6 29 226-256 109-137 (140)
340 PF07721 TPR_4: Tetratricopept 61.2 15 0.00031 19.3 2.9 18 184-201 7-24 (26)
341 KOG0550 Molecular chaperone (D 61.2 1.6E+02 0.0034 28.2 16.6 161 256-431 178-346 (486)
342 PF11846 DUF3366: Domain of un 61.0 46 0.00099 28.1 7.5 32 244-275 141-172 (193)
343 COG5108 RPO41 Mitochondrial DN 61.0 55 0.0012 33.1 8.5 80 337-417 32-114 (1117)
344 COG0457 NrfG FOG: TPR repeat [ 60.9 96 0.0021 25.7 24.8 194 178-390 59-258 (291)
345 PRK15180 Vi polysaccharide bio 59.4 1E+02 0.0022 30.0 9.7 117 190-310 301-419 (831)
346 KOG4077 Cytochrome c oxidase, 59.3 72 0.0016 24.8 7.2 47 230-276 67-113 (149)
347 KOG1550 Extracellular protein 59.2 2.1E+02 0.0045 29.0 17.9 173 194-389 228-418 (552)
348 PF13934 ELYS: Nuclear pore co 58.8 1.2E+02 0.0027 26.3 10.6 104 132-258 78-183 (226)
349 PF07163 Pex26: Pex26 protein; 58.6 77 0.0017 28.4 8.3 89 338-429 88-181 (309)
350 PF13181 TPR_8: Tetratricopept 58.2 30 0.00065 19.0 4.3 27 284-310 3-29 (34)
351 PF04090 RNA_pol_I_TF: RNA pol 58.2 1.2E+02 0.0025 25.8 9.1 27 214-240 43-69 (199)
352 COG0457 NrfG FOG: TPR repeat [ 56.9 1.1E+02 0.0024 25.3 26.9 223 191-435 36-265 (291)
353 PRK10564 maltose regulon perip 55.2 27 0.00058 31.6 5.1 29 251-279 261-289 (303)
354 PRK14958 DNA polymerase III su 54.1 1.9E+02 0.004 28.9 11.3 86 123-211 193-279 (509)
355 PF13174 TPR_6: Tetratricopept 52.9 29 0.00063 18.8 3.5 25 287-311 5-29 (33)
356 PF10579 Rapsyn_N: Rapsyn N-te 52.9 45 0.00097 23.4 4.8 49 294-356 18-66 (80)
357 PRK11906 transcriptional regul 52.9 2.3E+02 0.005 27.6 16.3 130 179-311 252-401 (458)
358 PRK15180 Vi polysaccharide bio 52.6 2.3E+02 0.0051 27.6 14.6 89 187-276 332-420 (831)
359 PF10475 DUF2450: Protein of u 52.3 1.6E+02 0.0034 26.8 9.9 112 182-303 102-218 (291)
360 KOG2066 Vacuolar assembly/sort 51.8 2.9E+02 0.0064 28.8 12.0 149 101-275 365-533 (846)
361 COG0735 Fur Fe2+/Zn2+ uptake r 51.5 77 0.0017 25.4 6.8 42 253-294 26-67 (145)
362 smart00638 LPD_N Lipoprotein N 51.4 2.8E+02 0.006 28.2 23.2 163 210-387 308-479 (574)
363 TIGR02508 type_III_yscG type I 51.2 1E+02 0.0022 23.0 7.3 79 193-277 20-98 (115)
364 PF03745 DUF309: Domain of unk 51.0 71 0.0015 21.2 5.6 49 257-305 9-62 (62)
365 PF02847 MA3: MA3 domain; Int 51.0 1E+02 0.0022 23.0 7.4 20 185-204 9-28 (113)
366 cd08819 CARD_MDA5_2 Caspase ac 50.5 93 0.002 22.4 7.2 16 294-309 48-63 (88)
367 PF14689 SPOB_a: Sensor_kinase 49.7 47 0.001 22.0 4.5 22 252-273 28-49 (62)
368 KOG2659 LisH motif-containing 49.3 1.8E+02 0.0039 25.3 9.8 110 118-237 14-128 (228)
369 PRK11639 zinc uptake transcrip 49.0 86 0.0019 25.9 7.0 59 239-298 18-76 (169)
370 PF12796 Ank_2: Ankyrin repeat 48.9 67 0.0015 22.6 5.8 15 188-202 4-18 (89)
371 PF10579 Rapsyn_N: Rapsyn N-te 47.3 61 0.0013 22.8 4.8 54 136-201 13-66 (80)
372 PRK13341 recombination factor 47.1 3.7E+02 0.0079 28.3 19.9 82 344-425 269-352 (725)
373 PRK11639 zinc uptake transcrip 47.0 1.3E+02 0.0029 24.8 7.8 51 337-387 29-79 (169)
374 PF10366 Vps39_1: Vacuolar sor 46.0 1.3E+02 0.0028 22.7 8.9 26 215-240 42-67 (108)
375 KOG2297 Predicted translation 46.0 2.4E+02 0.0052 25.8 12.5 37 256-293 264-305 (412)
376 PHA02874 ankyrin repeat protei 45.3 2.3E+02 0.005 27.4 10.5 50 185-235 5-55 (434)
377 PF12796 Ank_2: Ankyrin repeat 44.7 66 0.0014 22.6 5.2 81 221-316 3-86 (89)
378 PF08780 NTase_sub_bind: Nucle 44.6 1.4E+02 0.003 23.1 7.1 74 194-270 6-82 (124)
379 PRK14956 DNA polymerase III su 43.7 3.2E+02 0.007 27.0 10.8 36 211-246 247-282 (484)
380 PRK14951 DNA polymerase III su 43.4 3.9E+02 0.0084 27.5 12.4 85 123-210 198-283 (618)
381 PF10475 DUF2450: Protein of u 42.9 1.9E+02 0.0042 26.3 8.9 84 130-233 127-218 (291)
382 PF14689 SPOB_a: Sensor_kinase 42.4 1E+02 0.0022 20.4 5.3 28 177-204 22-49 (62)
383 PF09454 Vps23_core: Vps23 cor 42.4 80 0.0017 21.2 4.7 34 245-278 6-39 (65)
384 PHA03100 ankyrin repeat protei 42.1 2.6E+02 0.0055 27.4 10.5 119 183-316 37-170 (480)
385 COG4785 NlpI Lipoprotein NlpI, 41.6 2.4E+02 0.0051 24.5 15.9 182 101-311 74-266 (297)
386 PRK13342 recombination factor 41.1 3.4E+02 0.0073 26.2 20.7 95 336-430 230-329 (413)
387 cd08819 CARD_MDA5_2 Caspase ac 41.0 1.4E+02 0.0029 21.6 6.6 66 231-302 21-86 (88)
388 PRK14958 DNA polymerase III su 40.2 3.9E+02 0.0085 26.7 12.0 89 275-369 193-281 (509)
389 PRK14956 DNA polymerase III su 39.9 3.8E+02 0.0082 26.5 10.7 34 336-369 251-284 (484)
390 PF11864 DUF3384: Domain of un 38.6 4E+02 0.0086 26.3 19.5 87 350-436 152-243 (464)
391 smart00386 HAT HAT (Half-A-TPR 38.5 64 0.0014 17.1 3.5 14 227-240 2-15 (33)
392 TIGR02508 type_III_yscG type I 38.5 1.7E+02 0.0036 21.9 7.5 79 227-312 20-98 (115)
393 cd07153 Fur_like Ferric uptake 37.9 89 0.0019 23.6 5.2 48 339-386 6-53 (116)
394 PRK07003 DNA polymerase III su 37.8 5.2E+02 0.011 27.4 12.1 100 122-224 192-291 (830)
395 COG2137 OraA Uncharacterized p 37.8 2.4E+02 0.0052 23.5 12.1 77 353-433 88-165 (174)
396 KOG4648 Uncharacterized conser 37.7 1.3E+02 0.0029 27.8 6.7 51 186-236 105-155 (536)
397 PF02259 FAT: FAT domain; Int 36.8 3.4E+02 0.0074 25.0 16.9 171 128-310 29-212 (352)
398 PF11817 Foie-gras_1: Foie gra 36.8 2.2E+02 0.0048 25.1 8.2 58 252-309 183-245 (247)
399 PRK08691 DNA polymerase III su 36.6 5.2E+02 0.011 27.0 12.5 100 122-224 192-291 (709)
400 smart00028 TPR Tetratricopepti 36.3 62 0.0013 16.3 3.5 27 284-310 3-29 (34)
401 COG1466 HolA DNA polymerase II 36.1 3.6E+02 0.0078 25.1 10.0 95 269-368 149-243 (334)
402 PF01475 FUR: Ferric uptake re 35.6 82 0.0018 24.0 4.7 49 338-386 12-60 (120)
403 PRK09857 putative transposase; 35.4 2.8E+02 0.0062 25.3 8.7 65 251-316 210-274 (292)
404 PRK09462 fur ferric uptake reg 35.2 2.2E+02 0.0049 22.7 7.3 46 273-319 8-54 (148)
405 KOG4567 GTPase-activating prot 35.2 2.4E+02 0.0052 25.9 7.7 58 232-294 263-320 (370)
406 PRK09687 putative lyase; Provi 34.9 3.5E+02 0.0075 24.5 25.8 232 129-417 36-278 (280)
407 PRK09462 fur ferric uptake reg 33.8 2.1E+02 0.0046 22.8 6.9 61 237-298 7-68 (148)
408 KOG0403 Neoplastic transformat 33.4 4.6E+02 0.01 25.5 17.4 75 336-418 512-586 (645)
409 PF09454 Vps23_core: Vps23 cor 33.3 97 0.0021 20.8 4.0 51 209-260 5-55 (65)
410 PF02847 MA3: MA3 domain; Int 32.7 2.1E+02 0.0045 21.3 7.7 99 215-315 5-113 (113)
411 PF07575 Nucleopor_Nup85: Nup8 32.4 2.2E+02 0.0049 28.8 8.3 128 177-318 404-531 (566)
412 cd07153 Fur_like Ferric uptake 32.3 1.1E+02 0.0024 23.1 4.9 36 261-296 14-49 (116)
413 PF12862 Apc5: Anaphase-promot 32.2 1.9E+02 0.0042 20.8 6.8 54 257-310 8-69 (94)
414 COG2976 Uncharacterized protei 32.0 3.2E+02 0.007 23.3 13.1 89 219-312 96-189 (207)
415 COG2137 OraA Uncharacterized p 31.0 3.1E+02 0.0068 22.8 10.0 65 231-315 37-101 (174)
416 KOG4521 Nuclear pore complex, 30.2 8E+02 0.017 27.3 12.2 150 250-405 986-1140(1480)
417 PF10963 DUF2765: Protein of u 30.1 1.6E+02 0.0035 20.9 4.8 34 125-158 11-44 (83)
418 KOG4521 Nuclear pore complex, 29.9 8.1E+02 0.018 27.3 13.0 158 100-269 928-1124(1480)
419 PRK13342 recombination factor 29.7 5.2E+02 0.011 24.9 18.7 29 226-254 244-272 (413)
420 PRK09857 putative transposase; 29.6 4.1E+02 0.0088 24.3 8.7 18 264-281 257-274 (292)
421 PF11123 DNA_Packaging_2: DNA 29.6 1.8E+02 0.004 20.0 4.7 34 192-225 11-44 (82)
422 PRK14951 DNA polymerase III su 29.5 6.4E+02 0.014 26.0 17.3 74 240-316 198-284 (618)
423 KOG0991 Replication factor C, 29.5 4E+02 0.0087 23.5 13.1 57 224-281 204-272 (333)
424 PF11817 Foie-gras_1: Foie gra 29.4 4E+02 0.0086 23.5 9.8 56 183-238 183-244 (247)
425 PHA02798 ankyrin-like protein; 29.3 3.2E+02 0.0069 27.0 8.8 16 266-281 88-103 (489)
426 PRK12356 glutaminase; Reviewed 29.0 2.9E+02 0.0063 25.5 7.5 21 277-297 93-113 (319)
427 KOG2659 LisH motif-containing 28.9 3.9E+02 0.0085 23.3 9.9 100 207-308 21-129 (228)
428 PF04124 Dor1: Dor1-like famil 28.9 2.1E+02 0.0046 26.7 7.0 33 133-165 109-141 (338)
429 COG2976 Uncharacterized protei 28.2 3.8E+02 0.0082 22.8 13.4 126 212-363 54-189 (207)
430 PF01475 FUR: Ferric uptake re 28.1 99 0.0021 23.6 4.0 21 263-283 23-43 (120)
431 KOG1941 Acetylcholine receptor 27.7 5.3E+02 0.012 24.4 9.9 144 93-237 123-271 (518)
432 PF03745 DUF309: Domain of unk 27.6 1.9E+02 0.0041 19.2 6.1 48 188-235 9-62 (62)
433 PHA03100 ankyrin repeat protei 27.5 2.9E+02 0.0063 27.0 8.2 143 217-387 37-192 (480)
434 PF09868 DUF2095: Uncharacteri 27.1 2.2E+02 0.0048 21.6 5.2 31 124-160 61-91 (128)
435 PF08311 Mad3_BUB1_I: Mad3/BUB 26.8 3E+02 0.0066 21.3 9.4 44 148-203 81-124 (126)
436 COG2066 GlsA Glutaminase [Amin 26.7 1.3E+02 0.0027 27.3 4.7 27 2-28 92-118 (309)
437 COG5159 RPN6 26S proteasome re 26.6 4.9E+02 0.011 23.7 13.4 140 218-372 9-168 (421)
438 PF05944 Phage_term_smal: Phag 26.6 3.2E+02 0.0069 21.5 8.7 46 320-365 32-80 (132)
439 KOG0687 26S proteasome regulat 26.6 5.3E+02 0.011 24.0 15.9 95 214-310 106-209 (393)
440 PHA02940 hypothetical protein; 26.5 4.5E+02 0.0097 23.2 10.8 117 132-257 98-214 (315)
441 KOG4648 Uncharacterized conser 26.0 3.8E+02 0.0082 25.1 7.5 78 138-236 105-182 (536)
442 COG2909 MalT ATP-dependent tra 25.8 8.4E+02 0.018 26.1 24.3 89 188-276 425-526 (894)
443 PF06552 TOM20_plant: Plant sp 25.6 3.4E+02 0.0074 22.7 6.6 79 250-330 31-126 (186)
444 PF09868 DUF2095: Uncharacteri 25.3 2.6E+02 0.0056 21.3 5.3 29 184-212 67-95 (128)
445 PRK07452 DNA polymerase III su 25.3 5.4E+02 0.012 23.7 10.3 91 271-369 141-235 (326)
446 PF12862 Apc5: Anaphase-promot 25.3 2.6E+02 0.0057 20.1 7.2 47 343-389 8-62 (94)
447 PF08311 Mad3_BUB1_I: Mad3/BUB 25.1 3.3E+02 0.0071 21.1 8.2 43 265-307 81-124 (126)
448 PF11838 ERAP1_C: ERAP1-like C 24.9 5.3E+02 0.012 23.5 14.7 117 143-272 143-262 (324)
449 PRK12356 glutaminase; Reviewed 24.9 3E+02 0.0066 25.4 6.9 26 3-28 96-121 (319)
450 KOG0991 Replication factor C, 24.7 4.9E+02 0.011 23.0 14.9 131 180-318 132-274 (333)
451 PRK14953 DNA polymerase III su 24.5 7E+02 0.015 24.7 11.8 77 125-204 195-271 (486)
452 KOG0686 COP9 signalosome, subu 24.5 6.4E+02 0.014 24.3 13.9 31 346-376 317-352 (466)
453 TIGR03814 Gln_ase glutaminase 23.8 3.6E+02 0.0077 24.7 7.1 14 277-290 81-94 (300)
454 PF02607 B12-binding_2: B12 bi 23.8 1.3E+02 0.0029 20.7 3.7 41 343-383 11-51 (79)
455 PF09670 Cas_Cas02710: CRISPR- 23.8 6.4E+02 0.014 24.0 11.5 55 221-276 140-198 (379)
456 KOG2063 Vacuolar assembly/sort 23.6 9.5E+02 0.021 25.9 15.4 196 178-381 504-745 (877)
457 PF12926 MOZART2: Mitotic-spin 23.5 2.9E+02 0.0063 19.9 7.8 43 268-310 29-71 (88)
458 COG4003 Uncharacterized protei 23.4 2.8E+02 0.006 19.6 4.9 37 118-160 25-61 (98)
459 PRK12357 glutaminase; Reviewed 23.3 5E+02 0.011 24.1 7.9 14 277-290 97-110 (326)
460 PF02607 B12-binding_2: B12 bi 23.2 1E+02 0.0022 21.3 3.0 34 260-293 14-47 (79)
461 COG2178 Predicted RNA-binding 23.0 4.7E+02 0.01 22.2 11.5 121 228-361 19-149 (204)
462 PRK06645 DNA polymerase III su 22.6 7.9E+02 0.017 24.6 10.5 99 264-366 191-290 (507)
463 smart00638 LPD_N Lipoprotein N 22.6 8.1E+02 0.018 24.8 25.9 115 129-261 309-432 (574)
464 PF07064 RIC1: RIC1; InterPro 22.1 5.7E+02 0.012 22.8 16.0 165 250-440 85-254 (258)
465 PRK00971 glutaminase; Provisio 22.1 4.3E+02 0.0092 24.3 7.3 24 406-429 227-250 (307)
466 PF08870 DUF1832: Domain of un 22.0 3.6E+02 0.0079 20.5 5.9 35 261-296 62-96 (113)
467 PF14669 Asp_Glu_race_2: Putat 21.9 5E+02 0.011 22.1 16.5 60 372-431 136-206 (233)
468 cd08780 Death_TRADD Death Doma 21.8 3.2E+02 0.0069 19.8 5.1 58 368-430 32-89 (90)
469 PF08542 Rep_fac_C: Replicatio 21.3 1.9E+02 0.0041 20.4 4.2 47 246-294 4-50 (89)
470 PF14669 Asp_Glu_race_2: Putat 21.0 5.2E+02 0.011 22.0 16.2 196 124-358 2-206 (233)
471 PF10255 Paf67: RNA polymerase 21.0 4.8E+02 0.01 25.1 7.7 61 249-309 124-191 (404)
472 KOG3677 RNA polymerase I-assoc 21.0 7E+02 0.015 24.1 8.4 105 168-273 191-298 (525)
473 KOG1333 Uncharacterized conser 21.0 5.2E+02 0.011 22.0 6.8 18 222-239 99-116 (241)
474 TIGR02710 CRISPR-associated pr 21.0 7.4E+02 0.016 23.7 11.0 55 219-273 137-197 (380)
475 TIGR03581 EF_0839 conserved hy 20.6 3.4E+02 0.0074 23.4 5.8 82 228-309 137-235 (236)
476 KOG1147 Glutamyl-tRNA syntheta 20.6 1.4E+02 0.003 29.5 4.0 70 233-310 254-331 (712)
477 PHA02940 hypothetical protein; 20.4 6E+02 0.013 22.4 9.2 22 336-357 145-166 (315)
478 PF04090 RNA_pol_I_TF: RNA pol 20.3 3.8E+02 0.0082 22.8 6.2 27 335-361 43-69 (199)
479 PF09477 Type_III_YscG: Bacter 20.3 3.9E+02 0.0085 20.2 9.1 81 191-277 19-99 (116)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.6e-60 Score=483.76 Aligned_cols=407 Identities=14% Similarity=0.169 Sum_probs=370.0
Q ss_pred hhHHHHhhHhHHhhhccCCCcc-----hhhcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHH
Q 036107 5 HDIWKLLSQSHLQKHHKINPLG-----CLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRIS 79 (441)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~n~~i-----~~l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~ 79 (441)
+++.++|.+..-.+..++|..+ ..+++.|... +|.+++..+. .|+..+|+.+|.+|++.++++.|..++
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~-eAl~lf~~M~-----~pd~~Tyn~LL~a~~k~g~~e~A~~lf 460 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVK-EAFRFAKLIR-----NPTLSTFNMLMSVCASSQDIDGALRVL 460 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHH-HHHHHHHHcC-----CCCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4677788777666555555443 3466777777 8887776554 289999999999999999999999999
Q ss_pred HHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 036107 80 SHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDEL 159 (441)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~ 159 (441)
..|.+.|+.|+. .+++.|+.+|++.|++++|.++|+. |...|+.||..+|+++|.+|++.|++++|.++|++|.+.
T Consensus 461 ~~M~~~Gl~pD~-~tynsLI~~y~k~G~vd~A~~vf~e---M~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 461 RLVQEAGLKADC-KLYTTLISTCAKSGKVDAMFEVFHE---MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHHhCcCHHHHHHHHHH---HHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 999999999998 8999999999999999999999954 456799999999999999999999999999999999987
Q ss_pred cCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh---hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036107 160 SNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK---DCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236 (441)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 236 (441)
+ . .||..+|+.+|.+|++.|++++|.++|++|. .++.||..+|++||.+|++.|++++|.++|+
T Consensus 537 G-v------------~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 537 N-V------------KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred C-C------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7 3 3499999999999999999999999999994 3789999999999999999999999999999
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 237 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 316 (441)
+|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcc-------------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036107 317 TSFYSSLIFILSKAVRF-------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377 (441)
Q Consensus 317 ~~~~~~li~~~~~~g~~-------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 377 (441)
..+|+++|.+|+++|++ .+||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999987 89999999999999999999999999999999999999999999
Q ss_pred HHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC-------------------CccHHHHHHHHHHH
Q 036107 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK----KS-------------------LGNAKERIDELLTH 434 (441)
Q Consensus 378 ~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g-------------------~~~~a~~~~~~m~~ 434 (441)
|++.|++++|.+ ++.+|.+.|+.||..+|++|+..|.+ ++ ..++|..+|++|.+
T Consensus 764 ~~k~G~le~A~~---l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 764 SERKDDADVGLD---LLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHCCCHHHHHH---HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 999999999976 78888899999999999999876432 11 23568888988887
Q ss_pred Hhh
Q 036107 435 ATE 437 (441)
Q Consensus 435 ~~~ 437 (441)
..-
T Consensus 841 ~Gi 843 (1060)
T PLN03218 841 AGT 843 (1060)
T ss_pred CCC
Confidence 553
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.2e-59 Score=478.35 Aligned_cols=393 Identities=16% Similarity=0.214 Sum_probs=369.0
Q ss_pred hccCCCcchhhcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHH
Q 036107 19 HHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEIL 98 (441)
Q Consensus 19 ~~~~n~~i~~l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 98 (441)
...++..+..+++.|++. +|.++|+.|.......|+..++..++..|++.+.++.|..++..|.. |+. .+++.+
T Consensus 370 ~~~~~~~y~~l~r~G~l~-eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~-~Tyn~L 443 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIK-DCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTL-STFNML 443 (1060)
T ss_pred chHHHHHHHHHHHCcCHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCH-HHHHHH
Confidence 334566777899999999 99999999988766677888888899999999999999999998875 776 899999
Q ss_pred HhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCH
Q 036107 99 RKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT 178 (441)
Q Consensus 99 ~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~ 178 (441)
+..|++.|+++.|+++|+ .+.+.|+.||..+||++|.+|++.|++++|.++|++|.+.| . .||.
T Consensus 444 L~a~~k~g~~e~A~~lf~---~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v------------~Pdv 507 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLR---LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-V------------EANV 507 (1060)
T ss_pred HHHHHhCcCHHHHHHHHH---HHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-C------------CCCH
Confidence 999999999999999995 45567999999999999999999999999999999999977 3 3499
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhh-hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--CCCCCCHhhHHHHHH
Q 036107 179 RAMSVLMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ--HGFSPDGVSYTCFIE 255 (441)
Q Consensus 179 ~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~li~ 255 (441)
.+|+.+|.+|++.|++++|.++|+.|. .++.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ 587 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK 587 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 999999999999999999999999995 58999999999999999999999999999999986 689999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc--
Q 036107 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-- 333 (441)
Q Consensus 256 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-- 333 (441)
+|++.|++++|.++|++|.+.|++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|+.
T Consensus 588 ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred -----------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 036107 334 -----------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396 (441)
Q Consensus 334 -----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 396 (441)
.+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+ ++++
T Consensus 668 A~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle---lf~e 744 (1060)
T PLN03218 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE---VLSE 744 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH---HHHH
Confidence 89999999999999999999999999999999999999999999999999999966 7888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107 397 MLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436 (441)
Q Consensus 397 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 436 (441)
|...|+.||..||+.++.+|++.|++++|.++++.|.+..
T Consensus 745 M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 745 MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999998754
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6e-59 Score=473.88 Aligned_cols=384 Identities=13% Similarity=0.095 Sum_probs=363.1
Q ss_pred cCCCcchhhcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHh
Q 036107 21 KINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRK 100 (441)
Q Consensus 21 ~~n~~i~~l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~ 100 (441)
.+|..|..+++.|++. +|+++|.++....+..||..+|+.++.+|++.++++.+..+|..|.+.|+.|+. .+++.|+.
T Consensus 89 ~~~~~i~~l~~~g~~~-~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~-~~~n~Li~ 166 (697)
T PLN03081 89 SLCSQIEKLVACGRHR-EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ-YMMNRVLL 166 (697)
T ss_pred eHHHHHHHHHcCCCHH-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcch-HHHHHHHH
Confidence 5678888899999998 999999999887777899999999999999999999999999999999999997 89999999
Q ss_pred cCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHH
Q 036107 101 RYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRA 180 (441)
Q Consensus 101 ~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 180 (441)
+|.+.|+++.|.++|+.+. .||..+||++|.+|++.|++++|.++|++|.+.+ . .+|..+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~-------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~------------~p~~~t 226 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMP-------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDG-S------------DAEPRT 226 (697)
T ss_pred HHhcCCCHHHHHHHHhcCC-------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-C------------CCChhh
Confidence 9999999999999996553 3799999999999999999999999999999877 3 348999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh-hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 036107 181 MSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR 259 (441)
Q Consensus 181 ~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 259 (441)
|+.++.+|++.|+.+.+.+++..+ +.++.||..+||+||.+|+++|++++|.++|++|.. +|+++||++|.+|++
T Consensus 227 ~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~ 302 (697)
T PLN03081 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYAL 302 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHh
Confidence 999999999999999999999988 558999999999999999999999999999999975 799999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc------
Q 036107 260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------ 333 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~------ 333 (441)
.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++||++|+++|++
T Consensus 303 ~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v 382 (697)
T PLN03081 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ---------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH-CCCC
Q 036107 334 ---------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS-KGIV 403 (441)
Q Consensus 334 ---------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~-~~~~ 403 (441)
.+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.+|.+|++.|.+++|.+ +|+.|.+ .|+.
T Consensus 383 f~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~---~f~~m~~~~g~~ 459 (697)
T PLN03081 383 FDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE---IFQSMSENHRIK 459 (697)
T ss_pred HHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH---HHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999999977 6667765 6999
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 036107 404 PQESTHKMLAEELEKKSLGNAKERIDELLT 433 (441)
Q Consensus 404 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 433 (441)
|+..+|++++++|++.|++++|.++++.|.
T Consensus 460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~~ 489 (697)
T PLN03081 460 PRAMHYACMIELLGREGLLDEAYAMIRRAP 489 (697)
T ss_pred CCccchHhHHHHHHhcCCHHHHHHHHHHCC
Confidence 999999999999999999999999998874
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8e-59 Score=483.68 Aligned_cols=412 Identities=17% Similarity=0.170 Sum_probs=367.6
Q ss_pred hhHHHHhhHhHHhhhccCCCcchhhcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhh
Q 036107 5 HDIWKLLSQSHLQKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALS 84 (441)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~n~~i~~l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~ 84 (441)
.+++++|.+...++...+|.+|..+++.|++. +|.++|+.|... +..||..||+++|.+|+..+++..+..+|.++.+
T Consensus 138 ~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~-~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 138 VHAWYVFGKMPERDLFSWNVLVGGYAKAGYFD-EALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred HHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHH-HHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 46778888888888889999999999999999 999999977654 7889999999999999999999999999999999
Q ss_pred cCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCc
Q 036107 85 EDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV 164 (441)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~ 164 (441)
.|+.++. .+++.|+.+|.+.|++++|.++|+.+. .||..+||++|.+|++.|++++|+++|++|.+.| ..|
T Consensus 216 ~g~~~~~-~~~n~Li~~y~k~g~~~~A~~lf~~m~-------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~P 286 (857)
T PLN03077 216 FGFELDV-DVVNALITMYVKCGDVVSARLVFDRMP-------RRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDP 286 (857)
T ss_pred cCCCccc-chHhHHHHHHhcCCCHHHHHHHHhcCC-------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCC
Confidence 9999998 899999999999999999999997554 3689999999999999999999999999999977 778
Q ss_pred cHHHHHHHHhh-----------------------cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHH
Q 036107 165 SLAAMSTVMRR-----------------------LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG 221 (441)
Q Consensus 165 ~~~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 221 (441)
+..++..++.. +|..+|++||.+|++.|++++|.++|++|.. ||..+||++|.+
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~ 363 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISG 363 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHH
Confidence 87777777653 4889999999999999999999999999964 788899999999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036107 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301 (441)
Q Consensus 222 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 301 (441)
|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++++.|.+.|+.|+..+|++||.+|++.|++++|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888888888888888888888
Q ss_pred HHHHHHHhhC------------------------------CCCCCHHHHHHHH---------------------------
Q 036107 302 LKVYEKMKSD------------------------------DCLTDTSFYSSLI--------------------------- 324 (441)
Q Consensus 302 ~~~~~~m~~~------------------------------g~~~~~~~~~~li--------------------------- 324 (441)
.++|++|.+. ++.||..||+++|
T Consensus 444 ~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence 8777776543 3456666655544
Q ss_pred --------HHHHhcCcc--------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036107 325 --------FILSKAVRF--------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382 (441)
Q Consensus 325 --------~~~~~~g~~--------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 382 (441)
++|+++|+. .+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.+|.+|++.|
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 555555543 6799999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 036107 383 RMKDGMLVLNLMREML-SKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433 (441)
Q Consensus 383 ~~~~a~~~~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 433 (441)
++++|.+ +|++|. +.|+.|+..+|++++++|++.|++++|.+++++|.
T Consensus 604 ~v~ea~~---~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 604 MVTQGLE---YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred hHHHHHH---HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 9999966 777787 67999999999999999999999999999999985
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4e-54 Score=448.45 Aligned_cols=388 Identities=19% Similarity=0.150 Sum_probs=363.2
Q ss_pred hhhccCCCcchhhcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHH
Q 036107 17 QKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSE 96 (441)
Q Consensus 17 ~~~~~~n~~i~~l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 96 (441)
.+....|..+..+|+.|++. +|.++++.+.. .+..|+..+|..++.+|.+.+.++.+..+|..+.+.+..+++ .+++
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~-~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~n 125 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLE-QALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGV-RLGN 125 (857)
T ss_pred cchhhHHHHHHHHHhCCCHH-HHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCc-hHHH
Confidence 34455789999999999999 99999997765 356789999999999999999999999999999999998887 7999
Q ss_pred HHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhc
Q 036107 97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176 (441)
Q Consensus 97 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~ 176 (441)
.++..|++.|+++.|+++|+.|. .||..+||++|.+|++.|++++|+++|++|...| . .|
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~-------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g-~------------~P 185 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMP-------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-V------------RP 185 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCC-------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C------------CC
Confidence 99999999999999999996554 3799999999999999999999999999999876 3 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHh-hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 255 (441)
|..||++++.+|++.++++.+.+++..+ +.++.||..+||+||.+|++.|++++|.++|++|.. ||.++||++|.
T Consensus 186 d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~ 261 (857)
T PLN03077 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMIS 261 (857)
T ss_pred ChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHH
Confidence 9999999999999999999999999998 559999999999999999999999999999999975 79999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc--
Q 036107 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-- 333 (441)
Q Consensus 256 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-- 333 (441)
+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||..+|+++|.+|+++|++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC
Q 036107 334 -------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400 (441)
Q Consensus 334 -------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~ 400 (441)
.+||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.+ ++..|.+.
T Consensus 342 A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~---l~~~~~~~ 418 (857)
T PLN03077 342 AEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK---LHELAERK 418 (857)
T ss_pred HHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHH---HHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999977 66777889
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 036107 401 GIVPQESTHKMLAEELEKKSLGNAKERIDELLTH 434 (441)
Q Consensus 401 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 434 (441)
|+.|+..+|+.|+++|++.|++++|.++|+.|.+
T Consensus 419 g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999864
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-53 Score=435.10 Aligned_cols=381 Identities=15% Similarity=0.129 Sum_probs=274.1
Q ss_pred hhHHHHhhHhHHhhhccCCCcchhhcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhh
Q 036107 5 HDIWKLLSQSHLQKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALS 84 (441)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~n~~i~~l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~ 84 (441)
+++.++|.+..-++...+|.+|..+++.|++. +|.++|+.|.. .+..|+..||+.++.+|++.+....++.+|..+.+
T Consensus 175 ~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~-~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 175 IDARRLFDEMPERNLASWGTIIGGLVDAGNYR-EAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred HHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHH-HHHHHHHHHHH-hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 34555666555555666666666677666666 66666665543 34556666677777777666666666777776666
Q ss_pred cCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCc
Q 036107 85 EDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV 164 (441)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~ 164 (441)
.|+.++. .+++.|+.+|.++|++++|.++|+.+. .+|..+||++|.+|++.|++++|.++|++|.+.| .
T Consensus 253 ~g~~~d~-~~~n~Li~~y~k~g~~~~A~~vf~~m~-------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-~-- 321 (697)
T PLN03081 253 TGVVGDT-FVSCALIDMYSKCGDIEDARCVFDGMP-------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-V-- 321 (697)
T ss_pred hCCCccc-eeHHHHHHHHHHCCCHHHHHHHHHhCC-------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C--
Confidence 6666665 666667777777777777777765432 2466677777777777777777777777776655 2
Q ss_pred cHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh-hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 036107 165 SLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243 (441)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 243 (441)
.||..||++++.+|++.|++++|.+++..| +.++.||..+||+||.+|+++|++++|.++|++|.+
T Consensus 322 ----------~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--- 388 (697)
T PLN03081 322 ----------SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--- 388 (697)
T ss_pred ----------CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---
Confidence 236667777777777777777777777666 346667777777777777777777777777776653
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCCHHHHHH
Q 036107 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS-DDCLTDTSFYSS 322 (441)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~ 322 (441)
||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|.+ .|+.|+..+
T Consensus 389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~--- 464 (697)
T PLN03081 389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH--- 464 (697)
T ss_pred -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc---
Confidence 566677777777777777777777777777777777777777777777777777777777777754 466676654
Q ss_pred HHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC
Q 036107 323 LIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402 (441)
Q Consensus 323 li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~ 402 (441)
|+.||.+|++.|++++|.+++++| ++.|+..+|++|+.+|+..|+++.|.++ ++++. ++
T Consensus 465 -------------y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~---~~~l~--~~ 523 (697)
T PLN03081 465 -------------YACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLA---AEKLY--GM 523 (697)
T ss_pred -------------hHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHH---HHHHh--CC
Confidence 888888888899999999998876 6899999999999999999999999884 44443 45
Q ss_pred CCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107 403 VPQ-ESTHKMLAEELEKKSLGNAKERIDELLTHAT 436 (441)
Q Consensus 403 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 436 (441)
.|+ ..+|..|++.|++.|++++|.++++.|++..
T Consensus 524 ~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 524 GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 564 6799999999999999999999999998765
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.86 E-value=1.1e-18 Score=184.66 Aligned_cols=281 Identities=14% Similarity=0.092 Sum_probs=161.7
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 208 (441)
+...|..+..++.+.|++++|.+.|+++.+..+. +...+..+...+.+.|++++|...|+++....
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD--------------SALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444555555555555555555555554443211 34445555555555555555555555554333
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 288 (441)
+.+...+..+...+...|++++|.++++.+.+.+ +.+...+..+...+.+.|++++|.+.|+++.+.+ |+..++..+
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l 742 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKL 742 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHH
Confidence 4445555555555555555555555555555443 2344455555555556666666666666555543 233445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc------------------chHHHHHHHHHhcCChh
Q 036107 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------------LIYNTMISSACVRSEEG 350 (441)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~------------------~~~~~li~~~~~~g~~~ 350 (441)
..++.+.|++++|.+.++.+.+.. +.+...+..+...|.+.|+. .+++.+...+...|+ .
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H
Confidence 555666666666666666555532 23445555555555555555 445566666666666 5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHH
Q 036107 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDE 430 (441)
Q Consensus 351 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 430 (441)
+|+..+++..+.. .-+..++..+...+...|++++|.+ .++++.+.+.. +..++..+..++.+.|+.++|.++++
T Consensus 821 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~---~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 821 RALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALP---LLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHH---HHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666665432 1223345556666777788888755 56666655433 77888888888888888888888888
Q ss_pred HHH
Q 036107 431 LLT 433 (441)
Q Consensus 431 ~m~ 433 (441)
.|.
T Consensus 896 ~~~ 898 (899)
T TIGR02917 896 KLL 898 (899)
T ss_pred HHh
Confidence 774
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=5.6e-18 Score=162.12 Aligned_cols=297 Identities=11% Similarity=0.065 Sum_probs=235.4
Q ss_pred cCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHH
Q 036107 101 RYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRA 180 (441)
Q Consensus 101 ~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 180 (441)
.+...|+.+.|++.|..+... ...+..+|..+...+...|++++|.++++.+...+ ..... ....+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~---------~~~~~ 109 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV----DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTRE---------QRLLA 109 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHH---------HHHHH
Confidence 345667888999999644332 12245689999999999999999999999988743 21110 02357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HhhHHHHHHH
Q 036107 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD----GVSYTCFIEH 256 (441)
Q Consensus 181 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~ 256 (441)
+..+...|.+.|++++|..+|+++.+..+.+..+++.++..+.+.|++++|.+.++.+.+.+..++ ...|..+...
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 888999999999999999999999665566788899999999999999999999999987653332 1245667778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchH
Q 036107 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~ 336 (441)
+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+..... .++
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----------------~~~ 252 (389)
T PRK11788 190 ALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS----------------EVL 252 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH----------------HHH
Confidence 889999999999999998764 234667888889999999999999999999875322112 237
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036107 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416 (441)
Q Consensus 337 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~ 416 (441)
+.++.+|...|++++|...++++.+. .|+...+..+...+.+.|++++|.. .+.++.+ ..|+..++..++..+
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~---~l~~~l~--~~P~~~~~~~l~~~~ 325 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQA---LLREQLR--RHPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHH---HHHHHHH--hCcCHHHHHHHHHHh
Confidence 88888999999999999999999875 5777777889999999999999977 5555443 369999999999887
Q ss_pred Hh---cCCccHHHHHHHHHHHH
Q 036107 417 EK---KSLGNAKERIDELLTHA 435 (441)
Q Consensus 417 ~~---~g~~~~a~~~~~~m~~~ 435 (441)
.. .|+.+++..+++.|.+.
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred hhccCCccchhHHHHHHHHHHH
Confidence 75 55899999999988763
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.85 E-value=5.6e-18 Score=179.37 Aligned_cols=389 Identities=11% Similarity=-0.003 Sum_probs=239.5
Q ss_pred hcccchhcccccCccchhccCCCCCCC-CcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHH
Q 036107 29 LCNRHCITNELTGLPSWLKFFDTQSPD-EDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDK 107 (441)
Q Consensus 29 l~~~~~~~~~a~~l~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 107 (441)
+.+.|++. +|.+.+...... .|+ ...+..+...+...++.+.+...+..+.+...... .....++..+.+.|+
T Consensus 373 ~~~~g~~~-~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 373 YLALGDFE-KAAEYLAKATEL---DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELG--RADLLLILSYLRSGQ 446 (899)
T ss_pred HHHCCCHH-HHHHHHHHHHhc---CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcch--hhHHHHHHHHHhcCC
Confidence 44555555 555555532222 222 12223333333445556666666655554432211 233344455666666
Q ss_pred HHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHH------------------
Q 036107 108 VVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAM------------------ 169 (441)
Q Consensus 108 ~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~------------------ 169 (441)
.++|+++++.... ...++..+|+.+...+...|++++|.+.|+++.+..+..+.....
T Consensus 447 ~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 447 FDKALAAAKKLEK----KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred HHHHHHHHHHHHH----hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777666643221 233456677777777777777777777777776644222110000
Q ss_pred HHHH--hhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 036107 170 STVM--RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247 (441)
Q Consensus 170 ~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 247 (441)
..++ ...+..++..+...+.+.|+.++|..+++++....+.+...+..+...|.+.|++++|.++++++.+. .+.+.
T Consensus 523 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~ 601 (899)
T TIGR02917 523 EKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSP 601 (899)
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCH
Confidence 0000 00144566666666666777777777776664444455556666777777777777777777777653 23456
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 036107 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327 (441)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 327 (441)
.+|..+...+.+.|++++|...|+++.+.. +.+...+..+..++.+.|++++|..+|+.+.+.. +.+..++..+...+
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 677777777777777777777777776643 2355667777777777777777777777776643 33456667777777
Q ss_pred HhcCcc------------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 036107 328 SKAVRF------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389 (441)
Q Consensus 328 ~~~g~~------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 389 (441)
.+.|+. ..+..+...+...|++++|++.|+++... .|+..++..+...+.+.|++++|.+
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHH
Confidence 777665 45566667777788888888888887765 3555667777788888888888766
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107 390 VLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436 (441)
Q Consensus 390 ~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 436 (441)
.+.++.+. .+.+...+..+...|.+.|++++|.+.++.+....
T Consensus 758 ---~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 758 ---TLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred ---HHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 44444332 34466778888888888888888888888876554
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=5.4e-18 Score=162.25 Aligned_cols=300 Identities=11% Similarity=0.080 Sum_probs=236.6
Q ss_pred HHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCC--CHHHHHHHHHHHHcC
Q 036107 66 WVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH--TPETYNAMVEALGKS 143 (441)
Q Consensus 66 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p--~~~~y~~li~~~~~~ 143 (441)
....++.+.|...+..+.+.. |+...++..+...+.+.|++++|+..++.+... ....+ ....|..+...|.+.
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSR--PDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHC
Confidence 345577888999999998864 333357777888899999999999998644321 11111 135788999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc-----HHHHHHH
Q 036107 144 KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS-----SQIFDVL 218 (441)
Q Consensus 144 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~l 218 (441)
|+++.|..+|+++.+..+ .+..++..+...+.+.|++++|.+.++.+....+.+ ...+..+
T Consensus 121 g~~~~A~~~~~~~l~~~~--------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGD--------------FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred CCHHHHHHHHHHHHcCCc--------------chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 999999999999987431 167789999999999999999999999984422111 2245667
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 036107 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298 (441)
Q Consensus 219 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 298 (441)
...+.+.|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.+..+|.+.|++
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 788899999999999999998753 2345678888899999999999999999998764333356788999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036107 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378 (441)
Q Consensus 299 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 378 (441)
++|...++.+.+.. |+... ++.+...+.+.|++++|..+++++.+. .|+..++..++..+
T Consensus 266 ~~A~~~l~~~~~~~--p~~~~----------------~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~ 325 (389)
T PRK11788 266 AEGLEFLRRALEEY--PGADL----------------LLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHHhC--CCchH----------------HHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh
Confidence 99999999998864 45433 677888889999999999999998865 79999999999887
Q ss_pred Hh---cCChhhHHHHHHHHHHHHHCCCCCCHH
Q 036107 379 CH---KKRMKDGMLVLNLMREMLSKGIVPQES 407 (441)
Q Consensus 379 ~~---~g~~~~a~~~~~~~~~m~~~~~~p~~~ 407 (441)
.. .|+.+++ +..+++|.++++.|++.
T Consensus 326 ~~~~~~g~~~~a---~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 326 LAEAEEGRAKES---LLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhccCCccchhH---HHHHHHHHHHHHhCCCC
Confidence 75 4477777 44788888878777765
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1.2e-14 Score=129.95 Aligned_cols=252 Identities=15% Similarity=0.185 Sum_probs=181.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 255 (441)
+..+|.++|.++|+-...|.|.+++.+.+. ..+.+..+||.+|.+-+-..+ .++..+|.+..+.||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 788999999999999999999999998844 678899999999876554333 788999999999999999999999
Q ss_pred HHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHH----hhCCCCC----CHHHHHH
Q 036107 256 HYCREKDFRK----VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE-ALKVYEKM----KSDDCLT----DTSFYSS 322 (441)
Q Consensus 256 ~~~~~g~~~~----a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~m----~~~g~~~----~~~~~~~ 322 (441)
+.++.|+++. |.+++.+|++-|+.|...+|..+|.-+++.++..+ +..+..++ ..+.++| |...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999998764 57788899999999999999999999999888855 33333333 2233333 3445566
Q ss_pred HHHHHHhcCcc--------------------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107 323 LIFILSKAVRF--------------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376 (441)
Q Consensus 323 li~~~~~~g~~--------------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 376 (441)
.|+.|.+..+. .-|..+....|+....+.-+..|+.|.-.-.-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 66666655544 2333455555666666666666666666556677777777777
Q ss_pred HHHhcCChhhHHHHHH-----------------------------------------------------HHHHHHHCCCC
Q 036107 377 MCCHKKRMKDGMLVLN-----------------------------------------------------LMREMLSKGIV 403 (441)
Q Consensus 377 ~~~~~g~~~~a~~~~~-----------------------------------------------------~~~~m~~~~~~ 403 (441)
+..-.|.++-..++|. .-.+|.. ..
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~~ 519 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--QD 519 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--cc
Confidence 6666666665555544 1122222 22
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 036107 404 PQESTHKMLAEELEKKSLGNAKERIDELLTH 434 (441)
Q Consensus 404 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 434 (441)
.+....+...-.+.|.|..++|.+++..+.+
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~ 550 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLR 550 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHh
Confidence 3344566677778999999999999998853
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.72 E-value=8.4e-14 Score=140.59 Aligned_cols=371 Identities=13% Similarity=0.071 Sum_probs=266.7
Q ss_pred hhHHHHhhHhHHhhhccCCCcchhhcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhh
Q 036107 5 HDIWKLLSQSHLQKHHKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALS 84 (441)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~n~~i~~l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~ 84 (441)
|..+|.+++-|+-+..++.-+ |.+-++.- +..+.. .-+.....-++..+.+.|+++.|..++..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~ 70 (656)
T PRK15174 4 HSTFKKISPTTLLKQEDWEGL-CLYFSQHP---------EKVRDS---AGNEQNIILFAIACLRKDETDVGLTLLSDRVL 70 (656)
T ss_pred hhhhhccCchhhhhhhchhhH-hHHhhccc---------Hhhhhh---cccccCHHHHHHHHHhcCCcchhHHHhHHHHH
Confidence 566777777666555444332 33322211 111111 11344556677888899999999999998887
Q ss_pred cCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCC
Q 036107 85 EDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH-TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGY 163 (441)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~ 163 (441)
...... .+...+.......|+.+.|++.|+.... ..| +...|..+...+...|++++|.+.+++.....+.
T Consensus 71 ~~p~~~--~~l~~l~~~~l~~g~~~~A~~~l~~~l~-----~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~- 142 (656)
T PRK15174 71 TAKNGR--DLLRRWVISPLASSQPDAVLQVVNKLLA-----VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG- 142 (656)
T ss_pred hCCCch--hHHHHHhhhHhhcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 765554 2344444566679999999999964332 234 4667888889999999999999999999885422
Q ss_pred ccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 036107 164 VSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF 243 (441)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 243 (441)
+...+..+...+...|++++|...+..+....+.+...+..+ ..+...|++++|..+++.+.+...
T Consensus 143 -------------~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 143 -------------NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFA 208 (656)
T ss_pred -------------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 667888899999999999999999988743333334444343 347889999999999999877543
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHhhCCCCCCHHH
Q 036107 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE----ALKVYEKMKSDDCLTDTSF 319 (441)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~~ 319 (441)
.++...+..+...+.+.|++++|...+++..+.. +.+...+..+-..+...|++++ |...|++..+. .|+..
T Consensus 209 ~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~- 284 (656)
T PRK15174 209 LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNV- 284 (656)
T ss_pred CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCH-
Confidence 3445556666778899999999999999998764 3367788889999999999986 79999988875 34432
Q ss_pred HHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 036107 320 YSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD-CETHARSLKMCCHKKRMKDGMLVLNLMREML 398 (441)
Q Consensus 320 ~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~ 398 (441)
..+..+...+...|++++|+..+++..+. .|+ ...+..+...+.+.|++++|.+. +.++.
T Consensus 285 --------------~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~---l~~al 345 (656)
T PRK15174 285 --------------RIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDE---FVQLA 345 (656)
T ss_pred --------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH---HHHHH
Confidence 23777888888899999999999998765 444 34566677888899999999774 44544
Q ss_pred HCCCCCCHHH-HHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107 399 SKGIVPQEST-HKMLAEELEKKSLGNAKERIDELLTHA 435 (441)
Q Consensus 399 ~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~ 435 (441)
.. .|+... +..+..++...|+.++|.+.++...+.
T Consensus 346 ~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 346 RE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred Hh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 32 454433 333456788999999999999886554
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.59 E-value=6.5e-12 Score=127.00 Aligned_cols=294 Identities=11% Similarity=0.004 Sum_probs=224.8
Q ss_pred HhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCH
Q 036107 99 RKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT 178 (441)
Q Consensus 99 ~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~ 178 (441)
+....+.|++++|+.+++..... ..-+...+..+..+....|++++|.+.++++....|. +.
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~----~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~--------------~~ 110 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLT----AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC--------------QP 110 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHh----CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC--------------Ch
Confidence 34556778888998888533222 1123455666667777899999999999999986533 56
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258 (441)
Q Consensus 179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 258 (441)
..+..+...+.+.|++++|...+++.-...+.+...+..+...+...|++++|...++.+...... +...+..+ ..+.
T Consensus 111 ~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~ 188 (656)
T PRK15174 111 EDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFL 188 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHH
Confidence 778888899999999999999999985544567778899999999999999999999988764322 22333333 4478
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHH
Q 036107 259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNT 338 (441)
Q Consensus 259 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~ 338 (441)
..|++++|...++.+.+....++...+..+..++.+.|++++|...++...+.. |+.. ..+..
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~---------------~~~~~ 251 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGA---------------ALRRS 251 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCH---------------HHHHH
Confidence 899999999999998776544455566667788999999999999999998764 3322 22677
Q ss_pred HHHHHHhcCChhH----HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 036107 339 MISSACVRSEEGN----ALKLRQKIEEDSCKPD-CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP-QESTHKML 412 (441)
Q Consensus 339 li~~~~~~g~~~~----a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p-~~~~~~~l 412 (441)
+-..|...|+.++ |+..|++..+. .|+ ...+..+...+.+.|++++|... +++.... .| +...+..+
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~---l~~al~l--~P~~~~a~~~L 324 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPL---LQQSLAT--HPDLPYVRAMY 324 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHh--CCCCHHHHHHH
Confidence 7788888888885 89999998864 454 55788888999999999999774 4444332 34 35567778
Q ss_pred HHHHHhcCCccHHHHHHHHHHHHh
Q 036107 413 AEELEKKSLGNAKERIDELLTHAT 436 (441)
Q Consensus 413 l~~~~~~g~~~~a~~~~~~m~~~~ 436 (441)
...+.+.|++++|.+.++.+....
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC
Confidence 889999999999999998876543
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.55 E-value=2e-11 Score=123.60 Aligned_cols=368 Identities=11% Similarity=0.025 Sum_probs=238.1
Q ss_pred hcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHH
Q 036107 29 LCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKV 108 (441)
Q Consensus 29 l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 108 (441)
+-+.|++. +|.+.+.-. ....|+...|..+-.++...++++.+...+....+.. |+...++..+..+|...|++
T Consensus 137 ~~~~~~~~-~Ai~~y~~a---l~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 137 AYRNKDFN-KAIKLYSKA---IECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHcCCHH-HHHHHHHHH---HhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCH
Confidence 44556666 666666622 1233454555555555666778888888777776653 33334555566777777777
Q ss_pred HHHHhhhhhHhhh-----------------------------hcCCCCCCHHHHHHHHH---------------------
Q 036107 109 VEALKCFCFTWAK-----------------------------TQTGYMHTPETYNAMVE--------------------- 138 (441)
Q Consensus 109 ~~A~~~~~~~~~~-----------------------------~~~g~~p~~~~y~~li~--------------------- 138 (441)
++|+.-|...... ......|..........
T Consensus 211 ~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290 (615)
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence 7776544211000 00000011110000000
Q ss_pred ------H------HHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 036107 139 ------A------LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD 206 (441)
Q Consensus 139 ------~------~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 206 (441)
. ....+++++|.+.|++....+...+. ....+..+...+...|++++|+..|+..-.
T Consensus 291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~-----------~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEK-----------EAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChh-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 01124667777777777664311111 456677777788888999999999988754
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036107 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286 (441)
Q Consensus 207 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~ 286 (441)
..+-+...|..+...+...|++++|...|++..+.. +.+..+|..+...+...|++++|...|++..+... .+...+.
T Consensus 360 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~ 437 (615)
T TIGR00990 360 LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHI 437 (615)
T ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHH
Confidence 434456677888888888999999999998887642 23467888888888889999999999998877532 3566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-
Q 036107 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK- 365 (441)
Q Consensus 287 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~- 365 (441)
.+...+.+.|++++|...|++..+. .|+.. ..|+.+...+...|++++|++.|++..+..-.
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~--~P~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKN--FPEAP---------------DVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCh---------------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 7888888999999999999988764 23321 23777888889999999999999997754211
Q ss_pred -C---CHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107 366 -P---DCE-THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEELEKKSLGNAKERIDELLTHATE 437 (441)
Q Consensus 366 -p---~~~-t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 437 (441)
+ +.. .++.....+...|++++|.+ .+.+.... .|+ ...+..+...+.+.|++++|.+.++...+..+
T Consensus 501 ~~~~~~~~~l~~~a~~~~~~~~~~~eA~~---~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 501 KPMYMNVLPLINKALALFQWKQDFIEAEN---LCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred ccccccHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 1 111 12222223344689999977 45554333 343 44788899999999999999999988765543
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=2.2e-12 Score=115.62 Aligned_cols=290 Identities=15% Similarity=0.147 Sum_probs=210.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhc---C--HH---HHHHHHHH--H-------HhcCCH
Q 036107 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL---D--TR---AMSVLMDT--L-------VKRNSV 194 (441)
Q Consensus 132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~---~--~~---~~~~li~~--~-------~~~g~~ 194 (441)
+=|.++. ....|...++.-+++.|...+ ..++..+-..+++.. + .. -|.-.+.. + -+.|.+
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 4444443 455788889999999999877 444433333332211 0 00 00000000 0 011222
Q ss_pred HHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036107 195 AHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274 (441)
Q Consensus 195 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 274 (441)
|.-+|+.. +.+..+|.++|.+.||-...+.|.+++++-.....+.+..+||.+|.+-+-..+ .++..+|.
T Consensus 196 --AdL~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMi 265 (625)
T KOG4422|consen 196 --ADLLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMI 265 (625)
T ss_pred --HHHHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHH
Confidence 22222222 456778999999999999999999999999998889999999999987665443 78999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc-----------------
Q 036107 275 EKGCKPSVITCTIVMHALEKAKQIYE----ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------------- 333 (441)
Q Consensus 275 ~~g~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----------------- 333 (441)
...+.||..|||+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++.
T Consensus 266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 266 SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 99999999999999999999998875 557888999999999999999999988888776
Q ss_pred -----------chHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHH
Q 036107 334 -----------LIYNTMISSACVRSEEGNALKLRQKIEEDS----CKPDC---ETHARSLKMCCHKKRMKDGMLVLNLMR 395 (441)
Q Consensus 334 -----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~---~t~~~li~~~~~~g~~~~a~~~~~~~~ 395 (441)
..|-..+..|.+..+.+.|.++-.-.+... +.|+. +-|..+....|+....+.. +..+.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~---~~~Y~ 422 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT---LKWYE 422 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 445556666667777777777665554211 23332 2356677777776666665 45777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107 396 EMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436 (441)
Q Consensus 396 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 436 (441)
.|.-.-+.|+..+...++++..-.|.++-.-++|..+....
T Consensus 423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 78778888999999999999999999999999999887655
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.54 E-value=1.1e-10 Score=126.14 Aligned_cols=341 Identities=12% Similarity=0.028 Sum_probs=168.5
Q ss_pred HhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHH-----------
Q 036107 68 ESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAM----------- 136 (441)
Q Consensus 68 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~l----------- 136 (441)
..++++.|...+...++.. |+...+...+...|.+.|+.++|+..|+...... +. .+....|..+
T Consensus 281 ~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-p~-~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALD-PH-SSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC-ccchhHHHHHHHhhhHHHHHH
Confidence 4456666666666666543 2222455556666667777777777665322211 00 1111112111
Q ss_pred -HHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHH
Q 036107 137 -VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF 215 (441)
Q Consensus 137 -i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 215 (441)
-..+.+.|++++|.+.|++.....+. +...+..+-..+...|++++|++.|++.-...+.+...+
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~--------------~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~ 422 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNT--------------DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAV 422 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 23455667777777777776664321 456666677777778888888888877643323333344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCC--------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036107 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFS--------PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287 (441)
Q Consensus 216 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 287 (441)
..+...|. .++.++|..+++.+....-. .....+..+...+...|++++|.+.|++..+.... +...+..
T Consensus 423 ~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~ 500 (1157)
T PRK11447 423 RGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYR 500 (1157)
T ss_pred HHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 33333332 12333333333322111000 00011222223333444555555555544443211 2333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC----------------------------------CCCCHHH---------HHHHH
Q 036107 288 VMHALEKAKQIYEALKVYEKMKSDD----------------------------------CLTDTSF---------YSSLI 324 (441)
Q Consensus 288 ll~~~~~~~~~~~a~~~~~~m~~~g----------------------------------~~~~~~~---------~~~li 324 (441)
+...|.+.|++++|...++++.+.. ..++... +..+.
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 4444445555555555554444321 1111000 00111
Q ss_pred HHHHhcCcc--------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 036107 325 FILSKAVRF--------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV 390 (441)
Q Consensus 325 ~~~~~~g~~--------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 390 (441)
..+...|+. ..+..+-..+.+.|+.++|++.|++..+.. .-+...+..+...+...|++++|.+.
T Consensus 581 ~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 222222222 234455666677777777777777776542 22345666777777777777777664
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 036107 391 LNLMREMLSKGIVP-QESTHKMLAEELEKKSLGNAKERIDELLTH 434 (441)
Q Consensus 391 ~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 434 (441)
++ .... ..| +...+..+..++.+.|++++|.++++.+..
T Consensus 660 l~---~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 660 LA---KLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HH---HHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 44 3221 233 334555566666777777777777777654
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.52 E-value=2.7e-11 Score=130.67 Aligned_cols=332 Identities=9% Similarity=0.012 Sum_probs=183.7
Q ss_pred HHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCC-CHHHHHHHHHHHHcCC
Q 036107 66 WVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH-TPETYNAMVEALGKSK 144 (441)
Q Consensus 66 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~~~~~ 144 (441)
+.+.+++++|...+..+.+.... ...+...+..++...|+.++|++.|+..... .| +...+..+...+. .+
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P~--~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-----~p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDNT--DSYAVLGLGDVAMARKDYAAAERYYQQALRM-----DPGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH-hc
Confidence 34556777777777777765432 2244555667777778888888877533322 12 2334444444442 23
Q ss_pred ChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHh
Q 036107 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCK 224 (441)
Q Consensus 145 ~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 224 (441)
+.++|...++.+..... ..+...........+..+...+...|++++|.+.|++.....+-+...+..+...|.+
T Consensus 433 ~~~~A~~~l~~l~~~~~-----~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 433 SPEKALAFIASLSASQR-----RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred CHHHHHHHHHhCCHHHH-----HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44555554443322110 0011111111223344455555555666666666655533333344445555555556
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------
Q 036107 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG--------------------------- 277 (441)
Q Consensus 225 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--------------------------- 277 (441)
.|++++|...|++..+.. +.+...+..+...+...++.++|...++.+....
T Consensus 508 ~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 666666666665554421 1122222222222333444444444443322111
Q ss_pred ------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHh
Q 036107 278 ------------CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345 (441)
Q Consensus 278 ------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~ 345 (441)
.+.+...+..+...+.+.|++++|...|+...+.. |+.. ..+..+...|..
T Consensus 587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~---------------~a~~~la~~~~~ 649 (1157)
T PRK11447 587 GKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNA---------------DARLGLIEVDIA 649 (1157)
T ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH---------------HHHHHHHHHHHH
Confidence 12334445555566666666666666666666542 2211 347888889999
Q ss_pred cCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC--CCC---CHHHHHHHHHHHHhc
Q 036107 346 RSEEGNALKLRQKIEEDSCKPD-CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG--IVP---QESTHKMLAEELEKK 419 (441)
Q Consensus 346 ~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~--~~p---~~~~~~~ll~~~~~~ 419 (441)
.|+.++|++.++...+. .|+ ..+...+..++...|++++|.++ +++..... -.| +...+..+.+.+.+.
T Consensus 650 ~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~---~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~ 724 (1157)
T PRK11447 650 QGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRT---FNRLIPQAKSQPPSMESALVLRDAARFEAQT 724 (1157)
T ss_pred CCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHH---HHHHhhhCccCCcchhhHHHHHHHHHHHHHc
Confidence 99999999999987653 444 34566677788899999999874 44443322 122 234666778888999
Q ss_pred CCccHHHHHHHHHH
Q 036107 420 SLGNAKERIDELLT 433 (441)
Q Consensus 420 g~~~~a~~~~~~m~ 433 (441)
|++++|.+.++...
T Consensus 725 G~~~~A~~~y~~Al 738 (1157)
T PRK11447 725 GQPQQALETYKDAM 738 (1157)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998764
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.50 E-value=3.2e-10 Score=117.14 Aligned_cols=374 Identities=9% Similarity=-0.033 Sum_probs=207.2
Q ss_pred hcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHH
Q 036107 29 LCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKV 108 (441)
Q Consensus 29 l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 108 (441)
....|+.. +|++++.-.. .....+...+..+-.++...++++.|..++....+..... ..+...+...+...|+.
T Consensus 25 a~~~g~~~-~A~~~~~~~~--~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 25 ALWAGQDA-EVITVYNRYR--VHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN--DDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHcCCHH-HHHHHHHHHH--hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCH
Confidence 44555555 6654444222 1111133335566666677788888888888777653222 13444566677788888
Q ss_pred HHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHH
Q 036107 109 VEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL 188 (441)
Q Consensus 109 ~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 188 (441)
++|+..++..... ...+.. |..+-.++...|+.++|+..+++..+..|. +...+..+..++
T Consensus 100 ~eA~~~l~~~l~~----~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~--------------~~~~~~~la~~l 160 (765)
T PRK10049 100 DEALVKAKQLVSG----APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ--------------TQQYPTEYVQAL 160 (765)
T ss_pred HHHHHHHHHHHHh----CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHH
Confidence 8888888533222 222445 777777888888888888888888885533 556666677777
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHhhC-CCCCCHh-hHH-
Q 036107 189 VKRNSVAHAYKVFLKFKDCISLSS------QIFDVLIHGWC-----KTRKS---DYAQKAMKEMFQH-GFSPDGV-SYT- 251 (441)
Q Consensus 189 ~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~m~~~-g~~p~~~-~~~- 251 (441)
...|..+.|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. .-.|+.. .+.
T Consensus 161 ~~~~~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 161 RNNRLSAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HHCCChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 788888888888875432 1111 01111111111 11112 4444455554432 1112111 110
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---CHHHHHHHH
Q 036107 252 ---CFIEHYCREKDFRKVDYTLKEMQEKGCK-PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT---DTSFYSSLI 324 (441)
Q Consensus 252 ---~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~li 324 (441)
..+.++...|++++|...|+.+.+.+.+ |+. .-..+..+|...|++++|...|+++.+..-.. .......+.
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 1122334445556666666665554321 221 11113445555566666666655554422100 011222222
Q ss_pred HHHHhcCcc---------------------------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 036107 325 FILSKAVRF---------------------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371 (441)
Q Consensus 325 ~~~~~~g~~---------------------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 371 (441)
.++.+.|+. ..+..+...+...|+.++|+++++++.... .-+...+
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~ 396 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLR 396 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 233333333 013445667778888888988888887542 3344567
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEELEKKSLGNAKERIDELLTHA 435 (441)
Q Consensus 372 ~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 435 (441)
..+...+...|++++|++ .+++..+ +.|+ ...+..+...+.+.|++++|+.+++.+.+.
T Consensus 397 ~~lA~l~~~~g~~~~A~~---~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 397 IDYASVLQARGWPRAAEN---ELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHhcCCHHHHHH---HHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777778888888888877 4444332 3455 456666666778888999999988887654
No 19
>PF13041 PPR_2: PPR repeat family
Probab=99.47 E-value=1.2e-13 Score=89.33 Aligned_cols=49 Identities=35% Similarity=0.655 Sum_probs=24.9
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293 (441)
Q Consensus 245 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 293 (441)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4445555555555555555555555555555555555555555555444
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.47 E-value=3.6e-10 Score=114.48 Aligned_cols=295 Identities=11% Similarity=-0.006 Sum_probs=215.4
Q ss_pred HHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcC
Q 036107 98 LRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD 177 (441)
Q Consensus 98 l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~ 177 (441)
....+.+.|+++.|+..|... ....|+...|..+-.+|.+.|++++|++.++...+..+. +
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~a-----l~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~--------------~ 193 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKA-----IECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD--------------Y 193 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHH-----HhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--------------C
Confidence 345677789999999999533 245688889999999999999999999999998885522 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhh--CC---------------------------C----CcHHHHHHH------
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CI---------------------------S----LSSQIFDVL------ 218 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~---------------------------~----~~~~~~~~l------ 218 (441)
...+..+-.++...|++++|+.-|..... +. . |........
T Consensus 194 ~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 273 (615)
T TIGR00990 194 SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRP 273 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccC
Confidence 67888889999999999999876543310 00 0 000000000
Q ss_pred ---------------------HHHH------HhcCCHHHHHHHHHHHhhCC-CCC-CHhhHHHHHHHHHhcCCHHHHHHH
Q 036107 219 ---------------------IHGW------CKTRKSDYAQKAMKEMFQHG-FSP-DGVSYTCFIEHYCREKDFRKVDYT 269 (441)
Q Consensus 219 ---------------------i~~~------~~~~~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~l 269 (441)
+... ...+++++|.+.|++..+.+ ..| +...|+.+-..+...|++++|+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 274 KPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred CcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0000 11257889999999988754 233 345677888888899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCCh
Q 036107 270 LKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE 349 (441)
Q Consensus 270 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~ 349 (441)
|++..+... -+...|..+...+...|++++|...|+...+.. +.+.. .|..+...+...|++
T Consensus 354 ~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~----------------~~~~lg~~~~~~g~~ 415 (615)
T TIGR00990 354 LSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPD----------------IYYHRAQLHFIKGEF 415 (615)
T ss_pred HHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH----------------HHHHHHHHHHHcCCH
Confidence 999877532 236678888888999999999999999987753 11232 377778888889999
Q ss_pred hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHH
Q 036107 350 GNALKLRQKIEEDSCKP-DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERI 428 (441)
Q Consensus 350 ~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 428 (441)
++|+..|++..+. .| +...+..+...+.+.|++++|... +++.... .+-+...|..+-..+...|++++|.+.
T Consensus 416 ~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~---~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 416 AQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMAT---FRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEK 489 (615)
T ss_pred HHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999998764 44 455677777888899999999774 4443322 233467888888999999999999998
Q ss_pred HHHHHHH
Q 036107 429 DELLTHA 435 (441)
Q Consensus 429 ~~~m~~~ 435 (441)
++.....
T Consensus 490 ~~~Al~l 496 (615)
T TIGR00990 490 FDTAIEL 496 (615)
T ss_pred HHHHHhc
Confidence 8885544
No 21
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.46 E-value=3.4e-10 Score=107.97 Aligned_cols=281 Identities=10% Similarity=0.041 Sum_probs=208.1
Q ss_pred hHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHH-HHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHH-
Q 036107 105 PDKVVEALKCFCFTWAKTQTGYMHTPETYNAM-VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS- 182 (441)
Q Consensus 105 ~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~l-i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~- 182 (441)
.|++..|.+...... ...+++..+-.+ ..+..+.|+++.|.+.+.++.+..+ +.....
T Consensus 97 eGd~~~A~k~l~~~~-----~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~---------------~~~~~~~ 156 (398)
T PRK10747 97 EGDYQQVEKLMTRNA-----DHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELAD---------------NDQLPVE 156 (398)
T ss_pred CCCHHHHHHHHHHHH-----hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---------------cchHHHH
Confidence 577788887764221 112233433333 4444788999999999999987441 222222
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-------hhHHHHH
Q 036107 183 -VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG-------VSYTCFI 254 (441)
Q Consensus 183 -~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li 254 (441)
.....+...|+.+.|...++.+.+..+-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++
T Consensus 157 l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 157 ITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 33567888999999999999997766778888999999999999999999999999987655332 2344445
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccc
Q 036107 255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334 (441)
Q Consensus 255 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 334 (441)
.......+.+...++++.+-+. .+.+......+..++...|+.++|.+++++..+. .++.
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~----------------- 296 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDE----------------- 296 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH-----------------
Confidence 5555555666777777766433 3457788899999999999999999999998874 3433
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036107 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE-THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413 (441)
Q Consensus 335 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll 413 (441)
--.++.+....++.+++++..+...+. .|+.. .+..+-..|.+.+++++|.+. |+... ...|+..+|..+.
T Consensus 297 -~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~---le~al--~~~P~~~~~~~La 368 (398)
T PRK10747 297 -RLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLA---FRAAL--KQRPDAYDYAWLA 368 (398)
T ss_pred -HHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHH---HHHHH--hcCCCHHHHHHHH
Confidence 223445555668999999999998754 55554 466777899999999999884 44533 3579999999999
Q ss_pred HHHHhcCCccHHHHHHHHHH
Q 036107 414 EELEKKSLGNAKERIDELLT 433 (441)
Q Consensus 414 ~~~~~~g~~~~a~~~~~~m~ 433 (441)
..+.+.|+.++|.++++.-.
T Consensus 369 ~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 369 DALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999988643
No 22
>PF13041 PPR_2: PPR repeat family
Probab=99.46 E-value=1.5e-13 Score=88.85 Aligned_cols=50 Identities=34% Similarity=0.651 Sum_probs=48.1
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR 259 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 259 (441)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999975
No 23
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.45 E-value=3.8e-11 Score=116.67 Aligned_cols=227 Identities=14% Similarity=0.088 Sum_probs=128.7
Q ss_pred cCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCC
Q 036107 48 FFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYM 127 (441)
Q Consensus 48 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~ 127 (441)
.-.+..|+..||.+++..+|..|+.+.|. ++..|.-...... +.+++.++......++.+.+. .
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~-e~vf~~lv~sh~~And~Enpk--------------e 80 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVR-EGVFRGLVASHKEANDAENPK--------------E 80 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccccccc-chhHHHHHhcccccccccCCC--------------C
Confidence 34688999999999999999999999999 8898877665555 478889988888888776664 4
Q ss_pred CCHHHHHHHHHHHHcCCChhH---HHHHHHHHHH----hcCCCccHHHHHH--HHhhcCHHHHHHHHHHHHhcCCHHHHH
Q 036107 128 HTPETYNAMVEALGKSKKFGL---MWELVKEIDE----LSNGYVSLAAMST--VMRRLDTRAMSVLMDTLVKRNSVAHAY 198 (441)
Q Consensus 128 p~~~~y~~li~~~~~~~~~~~---a~~l~~~m~~----~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~ 198 (441)
|...+|+.+..+|...||+.. ..+.++.+.. .|.+.+....... +.....+. -..++......|.++.++
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd-a~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD-AENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchh-HHHHHHHHHHHHHHHHHH
Confidence 788999999999999998765 3332222222 2222221111111 11111111 112222333344444444
Q ss_pred HHHHHhh------------------------------hCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 036107 199 KVFLKFK------------------------------DCI-SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG 247 (441)
Q Consensus 199 ~~~~~~~------------------------------~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 247 (441)
++...++ ... .|+..+|.+++.+-.-+|+++.|..++.+|++.|++.+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 4443331 111 245555555555555555555555555555555555555
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036107 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294 (441)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 294 (441)
+-|-.+|-+ .++...+..+++-|++.|+.|+..|+..-+..+..
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 444444433 44444555555555555555555555544444444
No 24
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.38 E-value=6e-11 Score=111.20 Aligned_cols=306 Identities=10% Similarity=0.055 Sum_probs=147.1
Q ss_pred CcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHH----
Q 036107 56 EDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPE---- 131 (441)
Q Consensus 56 ~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~---- 131 (441)
..+|+.+-..+...|.++.+...+..+++-. |+.-..+.-+..++...|+.+.|.+.|... ..+.|+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~a-----lqlnP~l~ca~s 188 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEA-----LQLNPDLYCARS 188 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHH-----HhcCcchhhhhc
Confidence 4566667777777777777777777666543 211123333444555555555555555211 11223333
Q ss_pred -------------------------------HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHH
Q 036107 132 -------------------------------TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRA 180 (441)
Q Consensus 132 -------------------------------~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 180 (441)
.|+.|-..+-..|+.-.|++-|++..+.++.++ ..
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~--------------dA 254 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL--------------DA 254 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch--------------HH
Confidence 344444444444444444444444444333322 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHh
Q 036107 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCR 259 (441)
Q Consensus 181 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 259 (441)
|-.|-..|...+.+++|...|.+.-.--+.....+..+-..|-..|.++.|...|++..+. .|+ ...|+.|-.++-.
T Consensus 255 YiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd 332 (966)
T KOG4626|consen 255 YINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKD 332 (966)
T ss_pred HhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHh
Confidence 4444455555555555555554432222233444444555555555555555555555442 333 2455555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCcc-----
Q 036107 260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD-TSFYSSLIFILSKAVRF----- 333 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~----- 333 (441)
.|++.+|.+.+.+...... --....+.|-..|...|.+++|..+|....+. .|. ....+.|-..|-..|+.
T Consensus 333 ~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~ 409 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIM 409 (966)
T ss_pred ccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHH
Confidence 5555555555555544311 12344555555555555555555555554442 121 11222333333333332
Q ss_pred -------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHH
Q 036107 334 -------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC-ETHARSLKMCCHKKRMKDGML 389 (441)
Q Consensus 334 -------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~ 389 (441)
..|+.+-..|-..|+++.|++.+.+.+. +.|.. ..++.|-..|-..|++.+|.+
T Consensus 410 ~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 410 CYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred HHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 3344444555555555555555554442 23332 345555555556666666544
No 25
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.36 E-value=2.4e-09 Score=102.62 Aligned_cols=292 Identities=9% Similarity=-0.037 Sum_probs=202.4
Q ss_pred CChHHHHHHHhhhhhHhhhhcCCCCCCHH-HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHH
Q 036107 103 PSPDKVVEALKCFCFTWAKTQTGYMHTPE-TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181 (441)
Q Consensus 103 ~~~g~~~~A~~~~~~~~~~~~~g~~p~~~-~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (441)
...|++..|.+.+.. .....|++. .|-..-.+..+.|+.+.|.+.+.+..+..+.. +...-
T Consensus 95 ~~~g~~~~A~~~l~~-----~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~-------------~l~~~ 156 (409)
T TIGR00540 95 LAEGDYAKAEKLIAK-----NADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGND-------------NILVE 156 (409)
T ss_pred HhCCCHHHHHHHHHH-----HhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC-------------chHHH
Confidence 456788888887732 223446544 34444567778899999999999987643111 12233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH---H
Q 036107 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY---C 258 (441)
Q Consensus 182 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~ 258 (441)
......+...|+++.|.+.++.+.+..+-+..+...+...+...|++++|.+++..+.+.++.++...-..-..++ .
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3457778889999999999999976666677889999999999999999999999999987543332212222222 2
Q ss_pred hcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccch
Q 036107 259 REKDFRKVDYTLKEMQEKGC---KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335 (441)
Q Consensus 259 ~~g~~~~a~~l~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (441)
..+..++..+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.........+
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~--------------- 301 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL--------------- 301 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh---------------
Confidence 33333334445555554321 237888899999999999999999999999886432211100
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036107 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE---THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412 (441)
Q Consensus 336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~l 412 (441)
...........++.+.+++.+++..+. .|+.. ...++-..|.+.|++++|.+ .|+........|+...+..+
T Consensus 302 ~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~---~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 302 PLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAAD---AFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHH---HHHHhHHhhcCCCHHHHHHH
Confidence 111122223456778888888776643 44444 45577788899999999988 45532233468999999999
Q ss_pred HHHHHhcCCccHHHHHHHHH
Q 036107 413 AEELEKKSLGNAKERIDELL 432 (441)
Q Consensus 413 l~~~~~~g~~~~a~~~~~~m 432 (441)
...+.+.|+.++|.+++++-
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999874
No 26
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.35 E-value=6.4e-10 Score=104.50 Aligned_cols=213 Identities=13% Similarity=0.106 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 209 (441)
...+..+-..|-..|+++.|+..+++..+..+.+ +..|+.|-.++-..|++.+|.+.|++.-.-.+
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F--------------~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF--------------PDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCc--------------hHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 3455566666666666666666666666644333 36777788888888888888887777644334
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHH
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS-VITCTI 287 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~ 287 (441)
-.....+.|-+.|...|.+++|..+|....+ +.|. ...++.|-..|-+.|++++|...+++... ++|+ ...|+.
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~N 427 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSN 427 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHh
Confidence 4455677777778888888888888777665 3344 34677777777788888888888877655 4555 467777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036107 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367 (441)
Q Consensus 288 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 367 (441)
+-..|-..|+++.|.+.+.+.+..+ |.-. ..++.|-+.|-..|++.+|+.-+++... ++||
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~n--Pt~A---------------eAhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQIN--PTFA---------------EAHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcC--cHHH---------------HHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 7777888888888887777776643 3211 3488999999999999999999998764 4666
Q ss_pred HH-HHHHHHHHHH
Q 036107 368 CE-THARSLKMCC 379 (441)
Q Consensus 368 ~~-t~~~li~~~~ 379 (441)
.. .|..++.+.-
T Consensus 489 fpdA~cNllh~lq 501 (966)
T KOG4626|consen 489 FPDAYCNLLHCLQ 501 (966)
T ss_pred CchhhhHHHHHHH
Confidence 53 4555555443
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.35 E-value=9.8e-12 Score=113.13 Aligned_cols=260 Identities=14% Similarity=0.098 Sum_probs=105.7
Q ss_pred HHHHHHHcCCChhHHHHHHHH-HHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHH
Q 036107 135 AMVEALGKSKKFGLMWELVKE-IDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213 (441)
Q Consensus 135 ~li~~~~~~~~~~~a~~l~~~-m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 213 (441)
.+-..+.+.|++++|+++++. ..... .+. |..-|..+.......++.+.|.+.++++-..-+-+..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~--~~~-----------~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~ 79 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA--PPD-----------DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQ 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc--ccc-----------ccccccccccccccccccccccccccccccccccccc
Confidence 446677889999999999965 33320 111 5566666666777789999999999998543333566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Q 036107 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG-CKPSVITCTIVMHAL 292 (441)
Q Consensus 214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~~~~~ll~~~ 292 (441)
.+..++.. ...+++++|.+++++..+.. ++...+..++..+.+.++++++.++++...+.. .+.+...|..+...+
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 156 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIY 156 (280)
T ss_dssp -----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHH
T ss_pred cccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 68888887 78999999999998876643 677778889999999999999999999987543 456788889999999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 036107 293 EKAKQIYEALKVYEKMKSDDCLTD-TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371 (441)
Q Consensus 293 ~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 371 (441)
.+.|+.++|.+.+++..+. .|+ ... .+.++..+...|+.+++.++++...... ..|...+
T Consensus 157 ~~~G~~~~A~~~~~~al~~--~P~~~~~----------------~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~ 217 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKALEL--DPDDPDA----------------RNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLW 217 (280)
T ss_dssp HHCCHHHHHHHHHHHHHHH---TT-HHH----------------HHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHC
T ss_pred HHcCCHHHHHHHHHHHHHc--CCCCHHH----------------HHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHH
Confidence 9999999999999999886 343 333 6777778888888899989998887654 4455567
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 036107 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433 (441)
Q Consensus 372 ~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 433 (441)
..+..++...|+.++|...++ +... -.+.|......+.+++...|+.++|.++....-
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~---~~~~-~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLE---KALK-LNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHH---HHHH-HSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHhcccccccccccccc---cccc-ccccccccccccccccccccccccccccccccc
Confidence 888999999999999977444 4322 234478889999999999999999999887654
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.35 E-value=5.9e-09 Score=106.48 Aligned_cols=173 Identities=9% Similarity=0.031 Sum_probs=90.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCCCHHHHHHHHHHHH
Q 036107 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD-----CLTDTSFYSSLIFILS 328 (441)
Q Consensus 254 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~ 328 (441)
+-++...|+..++.+.|+.|...|.+.-..+-..+.++|...+++++|..++..+.... ..++......|.-+|.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 33444555555555555555555544333455555555555555555555555553321 1112212222333333
Q ss_pred hcCcc---------------------------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036107 329 KAVRF---------------------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375 (441)
Q Consensus 329 ~~g~~---------------------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 375 (441)
..++. ..+..++..+...|+..+|++.++++.... .-|......+-
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A 457 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALA 457 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 33322 223345566667777777777777775432 44555666666
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccHHHHHHHHH
Q 036107 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEELEKKSLGNAKERIDELL 432 (441)
Q Consensus 376 ~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m 432 (441)
..+...|.+.+|++. ++... .+.|+ ..+......++...|++++|+++.+.+
T Consensus 458 ~v~~~Rg~p~~A~~~---~k~a~--~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 458 SIYLARDLPRKAEQE---LKAVE--SLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHhcCCHHHHHHH---HHHHh--hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 667777777777663 32321 22333 445566666666777777777666544
No 29
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.32 E-value=2e-08 Score=104.04 Aligned_cols=346 Identities=9% Similarity=0.003 Sum_probs=233.5
Q ss_pred chhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHH
Q 036107 62 SLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALG 141 (441)
Q Consensus 62 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~ 141 (441)
-+....-.|+.+.+..++....... +....+...+...+.+.|++++|+++++..... ...+...+..+...+.
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL----EPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHH
Confidence 3556667788889988887776633 443367888888999999999999998533222 1234667888888999
Q ss_pred cCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHH
Q 036107 142 KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG 221 (441)
Q Consensus 142 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 221 (441)
+.|++++|...+++..+..+. +.. +..+..++...|+.++|+..+++.-...+.+...+..+...
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P~--------------~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~ 159 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAPD--------------KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQA 159 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCC--------------CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999885422 556 88888899999999999999999866556677777778888
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCH------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc-CCCCCHH-HH
Q 036107 222 WCKTRKSDYAQKAMKEMFQHGFSPDG------VSYTCFIEHYC-----REKDF---RKVDYTLKEMQEK-GCKPSVI-TC 285 (441)
Q Consensus 222 ~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~l~~~m~~~-g~~p~~~-~~ 285 (441)
+...+..+.|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+
T Consensus 160 l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred HHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 8899999999999987664 2332 01122222222 22234 7788888888754 2333321 11
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCcc----------------------chHHH
Q 036107 286 ----TIVMHALEKAKQIYEALKVYEKMKSDDCL-TDTSFYSSLIFILSKAVRF----------------------LIYNT 338 (441)
Q Consensus 286 ----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~----------------------~~~~~ 338 (441)
...+.++...|++++|...|+.+.+.+-. |+. .-..+..+|...|+. .....
T Consensus 237 ~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 237 QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 11144556779999999999999987632 332 112234456666655 01233
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCC
Q 036107 339 MISSACVRSEEGNALKLRQKIEEDS-----------CKPDC---ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404 (441)
Q Consensus 339 li~~~~~~g~~~~a~~~~~~m~~~g-----------~~p~~---~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p 404 (441)
+..++...|++++|..+++.+.+.. -.|+. ..+..+...+...|+.++|.+ .++++... .+-
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~---~l~~al~~-~P~ 391 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM---RARELAYN-APG 391 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHh-CCC
Confidence 4446677788888888888876541 12332 234455667777788888866 44444322 333
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107 405 QESTHKMLAEELEKKSLGNAKERIDELLTHAT 436 (441)
Q Consensus 405 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 436 (441)
+...+..+...+...|+.++|++.++......
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 45677777777888888888888888765543
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.31 E-value=5.8e-09 Score=99.53 Aligned_cols=278 Identities=8% Similarity=0.009 Sum_probs=206.4
Q ss_pred hhhhchhhHHHHHhhhcCchhhHHHHHHHHH-hcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHH--HHHHHHHcCCC
Q 036107 69 SLKLNEQSRISSHALSEDHETDVDKVSEILR-KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYN--AMVEALGKSKK 145 (441)
Q Consensus 69 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~--~li~~~~~~~~ 145 (441)
.|+++.|++......+.+-.|. ++-.+. ....+.|+.+.|.+.+.... ...|+...+. .....+...|+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~---l~~llaA~aA~~~g~~~~A~~~l~~A~-----~~~~~~~~~~~l~~a~l~l~~g~ 168 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPV---VNYLLAAEAAQQRGDEARANQHLERAA-----ELADNDQLPVEITRVRIQLARNE 168 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchH---HHHHHHHHHHHHCCCHHHHHHHHHHHH-----hcCCcchHHHHHHHHHHHHHCCC
Confidence 4778888877665544433333 333443 44478899999999885332 3345654333 33568889999
Q ss_pred hhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHH--------HHHH
Q 036107 146 FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ--------IFDV 217 (441)
Q Consensus 146 ~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~~ 217 (441)
++.|.+.++++.+..|. ++.....+...|.+.|++++|.+++..+.+....+.. +|..
T Consensus 169 ~~~Al~~l~~~~~~~P~--------------~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 169 NHAARHGVDKLLEVAPR--------------HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHHHHHHHHHhcCCC--------------CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999886533 6789999999999999999999999999653332322 3344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297 (441)
Q Consensus 218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 297 (441)
++....+..+.+...++++++.+. .+.++.....+..++...|+.++|.+++++..+. .||.. -.++.+....++
T Consensus 235 l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~ 309 (398)
T PRK10747 235 LMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNN 309 (398)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCC
Confidence 455455556677788888887643 3457888999999999999999999999998874 44442 223444456699
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036107 298 IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKM 377 (441)
Q Consensus 298 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 377 (441)
.+++.+..+...+.. |+... .+..+-..+.+.|++++|.+.|+...+. .|+..++..+-..
T Consensus 310 ~~~al~~~e~~lk~~--P~~~~---------------l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~ 370 (398)
T PRK10747 310 PEQLEKVLRQQIKQH--GDTPL---------------LWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADA 370 (398)
T ss_pred hHHHHHHHHHHHhhC--CCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHH
Confidence 999999999988753 33321 2677778889999999999999999864 7999999999999
Q ss_pred HHhcCChhhHHHHHH
Q 036107 378 CCHKKRMKDGMLVLN 392 (441)
Q Consensus 378 ~~~~g~~~~a~~~~~ 392 (441)
+.+.|+.++|.++++
T Consensus 371 ~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 371 LDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHcCCHHHHHHHHH
Confidence 999999999987555
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.31 E-value=1.8e-11 Score=111.35 Aligned_cols=258 Identities=10% Similarity=0.023 Sum_probs=107.6
Q ss_pred HHHhcCCChHHHHHHHhhhhhHhhhhcCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhh
Q 036107 97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH-TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR 175 (441)
Q Consensus 97 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~ 175 (441)
.+...+.+.|+++.|+++++... ...-.| |...|..+-......++++.|.+.++++...++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~---~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~------------- 76 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAA---QKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA------------- 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccc-------------
Confidence 34678889999999999983111 111123 3445555555666778999999999999886522
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHhhHHHHH
Q 036107 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH-GFSPDGVSYTCFI 254 (441)
Q Consensus 176 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li 254 (441)
++..+..++.. ...+++++|.+++...-+. .++...+..++..+.+.++++++.++++..... ..+++...|..+.
T Consensus 77 -~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a 153 (280)
T PF13429_consen 77 -NPQDYERLIQL-LQDGDPEEALKLAEKAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALA 153 (280)
T ss_dssp --------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHH
T ss_pred -ccccccccccc-ccccccccccccccccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 45567777777 7899999999998765221 255666888889999999999999999997753 2456778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccc
Q 036107 255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334 (441)
Q Consensus 255 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 334 (441)
..+.+.|+.++|.+.+++..+.... |....+.++..+...|+.+++.+++....+.. +.|. .
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~----------------~ 215 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDP----------------D 215 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSC----------------C
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHH----------------H
Confidence 9999999999999999999886322 57778889999999999999999988887753 2222 2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 036107 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392 (441)
Q Consensus 335 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 392 (441)
.|..+..+|...|+.++|+..|++..... ..|..+...+..++...|+.++|.++..
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred HHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 27888889999999999999999987642 4477778888899999999999977543
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=1.1e-09 Score=106.83 Aligned_cols=240 Identities=10% Similarity=0.068 Sum_probs=158.6
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhc------------CHHHHHHHH
Q 036107 118 TWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL------------DTRAMSVLM 185 (441)
Q Consensus 118 ~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~------------~~~~~~~li 185 (441)
.-.+...|+.|+.+||..+|.-||..|+.+.|- +|.-|+... .++....+...+... ...+|..|.
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll 90 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPKEPLADTYTNLL 90 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCCCCchhHHHHHH
Confidence 345567799999999999999999999999888 888887754 666666666665552 668888899
Q ss_pred HHHHhcCCHHHHHHHHHH-hh--------hCCC-CcHHH-------------HHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107 186 DTLVKRNSVAHAYKVFLK-FK--------DCIS-LSSQI-------------FDVLIHGWCKTRKSDYAQKAMKEMFQHG 242 (441)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~-~~--------~~~~-~~~~~-------------~~~li~~~~~~~~~~~a~~~~~~m~~~g 242 (441)
.+|...||+.. ++..++ +. .|+. |.... -..+|.-..-.|.++.+++++..|....
T Consensus 91 ~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 91 KAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 99988888765 222222 21 1111 11110 1123333344455555555555554321
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 036107 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322 (441)
Q Consensus 243 ~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 322 (441)
..- ++-.+|.-+.... .-..++....+.-.-.|+..+|.+++++-.-+|+.+.|..++.+|++.|++.+.+-
T Consensus 170 ~~~---p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy--- 241 (1088)
T KOG4318|consen 170 WNA---PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY--- 241 (1088)
T ss_pred ccc---hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc---
Confidence 111 1111243333322 23333333333221158999999999999999999999999999999999888765
Q ss_pred HHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 036107 323 LIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384 (441)
Q Consensus 323 li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 384 (441)
|..++-+ .++...++.+++.|.+.|+.|+..|+...+..+.+.|..
T Consensus 242 -------------FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 242 -------------FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred -------------chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 4444444 777888999999999999999999999888888775543
No 33
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.29 E-value=1.7e-08 Score=103.21 Aligned_cols=277 Identities=10% Similarity=0.043 Sum_probs=181.9
Q ss_pred HHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHH
Q 036107 139 ALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVL 218 (441)
Q Consensus 139 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 218 (441)
...+.|+++.|++.|++..+..+..+ ...+ .++..+...|+.++|+..+++............-.+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~-------------~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQS-------------GQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccch-------------hhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 46678899999999999887553321 1222 566666666777777777776652122223233333
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 036107 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298 (441)
Q Consensus 219 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 298 (441)
...|...|++++|.++|+++.+... -+...+..++..+...++.++|++.++.+... .|+...+..++..+...++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 4566667777777777777776431 23455556666777777777777777777554 34444443333333334555
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc---------------------------------------------
Q 036107 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--------------------------------------------- 333 (441)
Q Consensus 299 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--------------------------------------------- 333 (441)
.+|.+.++++.+.. +-+...+..++.++.+.|-.
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 55777777776653 22444555555555555544
Q ss_pred ----------------------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 036107 334 ----------------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385 (441)
Q Consensus 334 ----------------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 385 (441)
...--.+-++...|+..++++.|+.|...|...-..+-..+.++|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 1111346677888999999999999999887655668889999999999999
Q ss_pred hHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107 386 DGMLVLNLMREMLSKG----IVPQESTHKMLAEELEKKSLGNAKERIDELLTHA 435 (441)
Q Consensus 386 ~a~~~~~~~~~m~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 435 (441)
+|..+++.+-. ..+ ..++......|.-++...+++++|..+++.+.+.
T Consensus 345 kA~~l~~~~~~--~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 345 KAAPILSSLYY--SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HHHHHHHHHhh--ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 99885543322 221 2334445688999999999999999999999874
No 34
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.23 E-value=1.1e-07 Score=99.39 Aligned_cols=258 Identities=8% Similarity=-0.009 Sum_probs=146.7
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 208 (441)
+...|..+-.++.. ++.++|...+.+..... |+......+...+...|++++|...|+++...
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---------------Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~- 538 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---------------PDAWQHRAVAYQAYQVEDYATALAAWQKISLH- 538 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---------------CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 34555555555554 66666777666655432 12222223334445677777777777766332
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 288 (441)
.|+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+.....+.|++++|...+++..+. .|+...|..+
T Consensus 539 ~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~L 615 (987)
T PRK09782 539 DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVAR 615 (987)
T ss_pred CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 3333445555666677777777777777776643 112222223333334457777777777777654 3456667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-C
Q 036107 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP-D 367 (441)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~ 367 (441)
..++.+.|++++|...+++..+.. |+... .++.+-..+...|+.++|+..+++..+. .| +
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l~--Pd~~~---------------a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~ 676 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALELE--PNNSN---------------YQAALGYALWDSGDIAQSREMLERAHKG--LPDD 676 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 777777777777777777776653 33221 2666666677777777777777776653 33 3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCccHHHHHHH
Q 036107 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE-STHKMLAEELEKKSLGNAKERIDE 430 (441)
Q Consensus 368 ~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~ 430 (441)
...+..+-.++...|++++|.. .+++..+ ..|+. .+....-....+..+++.+.+-++
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~---~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQH---YARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHH---HHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777766 3333221 33433 233333333344444444444433
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.1e-07 Score=86.90 Aligned_cols=295 Identities=13% Similarity=0.042 Sum_probs=211.7
Q ss_pred hcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHH
Q 036107 100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTR 179 (441)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~ 179 (441)
.++......+++++-. +.....|+.-+...-+..-.+.-...+++.|+.+|+++.+..|--.. |..
T Consensus 235 ~a~~el~q~~e~~~k~---e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~-----------dmd 300 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKK---ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLD-----------DMD 300 (559)
T ss_pred HHHHHHHHHHHHHHHH---HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcch-----------hHH
Confidence 4444444566666554 44445566555544444444556678999999999999996532222 778
Q ss_pred HHHHHHHHHHhcCCHH-HHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107 180 AMSVLMDTLVKRNSVA-HAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258 (441)
Q Consensus 180 ~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 258 (441)
+|+.++-.--.+.++. .|..+++. +.++| .|+.++-+-|+-.++.++|...|+...+.+- .....|+.|-+-|.
T Consensus 301 lySN~LYv~~~~skLs~LA~~v~~i--dKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyv 375 (559)
T KOG1155|consen 301 LYSNVLYVKNDKSKLSYLAQNVSNI--DKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYV 375 (559)
T ss_pred HHhHHHHHHhhhHHHHHHHHHHHHh--ccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHH
Confidence 8888776544433332 23333221 12333 4688888899999999999999999987531 24578999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHH
Q 036107 259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNT 338 (441)
Q Consensus 259 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~ 338 (441)
..++...|.+-++...+-.. .|-..|-.|-++|.-.+.+.-|.-.|++..+. +|+.. ..|.+
T Consensus 376 EmKNt~AAi~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDs---------------Rlw~a 437 (559)
T KOG1155|consen 376 EMKNTHAAIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDS---------------RLWVA 437 (559)
T ss_pred HhcccHHHHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCch---------------HHHHH
Confidence 99999999999999988643 48889999999999999999999999988874 45433 33999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH-HHHCCCCCC-H-HHHHHHHHH
Q 036107 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE-MLSKGIVPQ-E-STHKMLAEE 415 (441)
Q Consensus 339 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~-m~~~~~~p~-~-~~~~~ll~~ 415 (441)
|-.+|.+.+++++|++.|......| ..+...+..|-+.|-+.++.++|.+.++.+.+ +...|..-+ . .....|..-
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~ 516 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEY 516 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 9999999999999999999988766 44778899999999999999999887775444 333454443 2 233335556
Q ss_pred HHhcCCccHHHHHHHHH
Q 036107 416 LEKKSLGNAKERIDELL 432 (441)
Q Consensus 416 ~~~~g~~~~a~~~~~~m 432 (441)
+.+.+++++|.......
T Consensus 517 f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 517 FKKMKDFDEASYYATLV 533 (559)
T ss_pred HHhhcchHHHHHHHHHH
Confidence 67888888887754443
No 36
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=2.1e-08 Score=88.18 Aligned_cols=201 Identities=10% Similarity=-0.005 Sum_probs=160.4
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 208 (441)
....+..+...+...|++++|.+.+++..+..+. +...+..+...+...|++++|.+.+++.....
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 95 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD--------------DYLAYLALALYYQQLGELEKAEDSFRRALTLN 95 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567888889999999999999999998775422 56778888889999999999999998875544
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS-PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 287 (441)
+.+...+..+...+...|++++|.+.|++....... .....+..+...+...|++++|...+++..+... .+...+..
T Consensus 96 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~ 174 (234)
T TIGR02521 96 PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLE 174 (234)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHH
Confidence 556677888889999999999999999999864322 2345677778889999999999999999877532 25667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036107 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361 (441)
Q Consensus 288 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 361 (441)
+...+...|++++|...+++..+. .+.+... +..+...+...|+.++|..+.+.+..
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~----------------~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQT-YNQTAES----------------LWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHH----------------HHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 889999999999999999998876 2223332 55667777888888999988887754
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.19 E-value=2.9e-08 Score=95.26 Aligned_cols=286 Identities=8% Similarity=-0.021 Sum_probs=195.5
Q ss_pred HhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHH--HHHHHHHHHHcCCC
Q 036107 68 ESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPE--TYNAMVEALGKSKK 145 (441)
Q Consensus 68 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~--~y~~li~~~~~~~~ 145 (441)
..|+++.|........+....|.. .+-.....+.+.|+.+.|.+.+..... ..|+.. .--+....+...|+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~--~~llaA~aa~~~g~~~~A~~~l~~a~~-----~~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVL--NLIKAAEAAQQRGDEARANQHLEEAAE-----LAGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCcCchHHHHHHHHHHHHCCC
Confidence 457888888888777665543332 222334667778999999998854321 124432 33345778888999
Q ss_pred hhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHH-HHHHH--
Q 036107 146 FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV-LIHGW-- 222 (441)
Q Consensus 146 ~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-li~~~-- 222 (441)
++.|.+.++.+.+..|. ++.+...+...+...|+++.|.+.+..+.+...++...+.. -..++
T Consensus 169 ~~~Al~~l~~l~~~~P~--------------~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (409)
T TIGR00540 169 LHAARHGVDKLLEMAPR--------------HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIG 234 (409)
T ss_pred HHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999996533 67889999999999999999999999996532334333321 11111
Q ss_pred -HhcCCHHHHHHHHHHHhhCC---CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcC
Q 036107 223 -CKTRKSDYAQKAMKEMFQHG---FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA--LEKAK 296 (441)
Q Consensus 223 -~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~--~~~~~ 296 (441)
...+..+...+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+.........+. ++.. ....+
T Consensus 235 ~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~ 313 (409)
T TIGR00540 235 LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPE 313 (409)
T ss_pred HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCC
Confidence 22222222233444443321 12378889999999999999999999999998853322111111 2232 23457
Q ss_pred CHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107 297 QIYEALKVYEKMKSDDCLTDTS--FYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARS 374 (441)
Q Consensus 297 ~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 374 (441)
+.+.+.+.++...+. .|+.. . ...++-..+.+.|++++|.+.|+........|+..++..+
T Consensus 314 ~~~~~~~~~e~~lk~--~p~~~~~~---------------ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 314 DNEKLEKLIEKQAKN--VDDKPKCC---------------INRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred ChHHHHHHHHHHHHh--CCCChhHH---------------HHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 788888888887764 33332 1 1456667788899999999999965554568999999999
Q ss_pred HHHHHhcCChhhHHHHHH
Q 036107 375 LKMCCHKKRMKDGMLVLN 392 (441)
Q Consensus 375 i~~~~~~g~~~~a~~~~~ 392 (441)
...+.+.|+.++|.++++
T Consensus 377 a~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 999999999999988665
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.19 E-value=2.3e-07 Score=96.97 Aligned_cols=303 Identities=11% Similarity=-0.032 Sum_probs=205.4
Q ss_pred CCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHHh------c---CCCccHHHH
Q 036107 102 YPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKK---FGLMWELVKEIDEL------S---NGYVSLAAM 169 (441)
Q Consensus 102 ~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~---~~~a~~l~~~m~~~------~---~~~~~~~~~ 169 (441)
..+.|+..+|.++|+..... ...-.++...-+.++..|.+.+. ..++..+-..+... + +..+....+
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPF-QGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI 464 (987)
T ss_pred HHHcccHHHHHHHHHHhcCC-CcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence 34567788888888644443 22233355666788888888876 33443331101000 0 011111122
Q ss_pred HHHHhh----cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 036107 170 STVMRR----LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245 (441)
Q Consensus 170 ~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 245 (441)
...+.. .+...|..+-.++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... .|
T Consensus 465 ~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p 540 (987)
T PRK09782 465 VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM 540 (987)
T ss_pred HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 122111 156677777777776 8888899977766332 255443333445556899999999999998654 45
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 036107 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325 (441)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (441)
+...+..+...+.+.|++++|...+++..+.+ +.+...+..+.....+.|++++|...+++..+.. |+...
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a------ 611 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANA------ 611 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHH------
Confidence 55566777788899999999999999998765 2233444444455566799999999999998764 45433
Q ss_pred HHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCC
Q 036107 326 ILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC-ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404 (441)
Q Consensus 326 ~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p 404 (441)
|..+...+.+.|+.++|+..+++..+. .|+. ..+..+-..+...|+.++|... +.+..+ ..|
T Consensus 612 ----------~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~---l~~AL~--l~P 674 (987)
T PRK09782 612 ----------YVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREM---LERAHK--GLP 674 (987)
T ss_pred ----------HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH---HHHHHH--hCC
Confidence 778888899999999999999998865 5554 4566666789999999999774 444332 234
Q ss_pred -CHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107 405 -QESTHKMLAEELEKKSLGNAKERIDELLTHA 435 (441)
Q Consensus 405 -~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 435 (441)
+...+..+-.++...|++++|+..++.....
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5668889999999999999999999887544
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.17 E-value=4.4e-08 Score=86.11 Aligned_cols=131 Identities=9% Similarity=0.033 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258 (441)
Q Consensus 179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 258 (441)
..+..+...+...|++++|.+.+++.....+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 3344444455555555555555554432223334444444455555555555555555444432 122334444444444
Q ss_pred hcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 259 REKDFRKVDYTLKEMQEKGC-KPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 259 ~~g~~~~a~~l~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
..|++++|.+.+++..+... ......+..+..++...|++++|.+.+.+..+
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555443211 11122333344444444444444444444443
No 40
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.16 E-value=4e-07 Score=81.88 Aligned_cols=290 Identities=11% Similarity=0.056 Sum_probs=219.9
Q ss_pred ChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHH
Q 036107 104 SPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183 (441)
Q Consensus 104 ~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (441)
..|++..|.+.... ....+-. ....|-.-..+--+.|+.+.+-..+.+..+..+. .+..++-+
T Consensus 96 ~eG~~~qAEkl~~r---nae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~-------------~~l~v~lt 158 (400)
T COG3071 96 FEGDFQQAEKLLRR---NAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD-------------DTLAVELT 158 (400)
T ss_pred hcCcHHHHHHHHHH---hhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC-------------chHHHHHH
Confidence 46788888887732 2222322 2346666777778889999999999999886311 15566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-------hhHHHHHHH
Q 036107 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG-------VSYTCFIEH 256 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~ 256 (441)
........|+.+.|..-.+.+...-+-+..+......+|.+.|++.....++..|.+.|+--|. .+|+.++.-
T Consensus 159 rarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q 238 (400)
T COG3071 159 RARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQ 238 (400)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHH
Confidence 7788889999999999988886655667788999999999999999999999999998876554 468888887
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchH
Q 036107 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~ 336 (441)
....+..+.-...+++.... .+-+...-.+++.-+.++|+.++|.++..+-.+++..|+...
T Consensus 239 ~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----------------- 300 (400)
T COG3071 239 ARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----------------- 300 (400)
T ss_pred HhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH-----------------
Confidence 77777777766667666443 344566777888889999999999999999999888775322
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036107 337 NTMISSACVRSEEGNALKLRQKI-EEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415 (441)
Q Consensus 337 ~~li~~~~~~g~~~~a~~~~~~m-~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~ 415 (441)
.-.+.+-++.+.-++..++- ...+..| ..+.+|=..|.+.+.+.+|...++ . .....|+..+|+.+-++
T Consensus 301 ---~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~le---a--Al~~~~s~~~~~~la~~ 370 (400)
T COG3071 301 ---LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALE---A--ALKLRPSASDYAELADA 370 (400)
T ss_pred ---HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHH---H--HHhcCCChhhHHHHHHH
Confidence 22345566666666666553 4566666 557778888999999999988554 3 34689999999999999
Q ss_pred HHhcCCccHHHHHHHHHHHHhhh
Q 036107 416 LEKKSLGNAKERIDELLTHATEQ 438 (441)
Q Consensus 416 ~~~~g~~~~a~~~~~~m~~~~~~ 438 (441)
+.+.|+.++|.++.++-.....+
T Consensus 371 ~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 371 LDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred HHHcCChHHHHHHHHHHHHHhcC
Confidence 99999999999999886544443
No 41
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.14 E-value=3.7e-07 Score=82.10 Aligned_cols=282 Identities=9% Similarity=0.026 Sum_probs=220.1
Q ss_pred hhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhH
Q 036107 69 SLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGL 148 (441)
Q Consensus 69 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~ 148 (441)
.|++..|++......+.+..|-.. +-.=..+....|+.+.|-+.+... .+..-.++...+-+.-......|+.+.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~--~l~aA~AA~qrgd~~~an~yL~ea---ae~~~~~~l~v~ltrarlll~~~d~~a 171 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLA--YLLAAEAAQQRGDEDRANRYLAEA---AELAGDDTLAVELTRARLLLNRRDYPA 171 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHH--HHHHHHHHHhcccHHHHHHHHHHH---hccCCCchHHHHHHHHHHHHhCCCchh
Confidence 478999999988888888777652 222235667778888888777322 222224567788888899999999999
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCc-------HHHHHHHHH
Q 036107 149 MWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-CISLS-------SQIFDVLIH 220 (441)
Q Consensus 149 a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~-------~~~~~~li~ 220 (441)
|.+-+++..+..+. .+.+......+|.+.|++..+..+...+.+ +.--+ ..+|+.+++
T Consensus 172 A~~~v~~ll~~~pr--------------~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 172 ARENVDQLLEMTPR--------------HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred HHHHHHHHHHhCcC--------------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 99999999986633 678999999999999999999999999944 43322 346888888
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 036107 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300 (441)
Q Consensus 221 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 300 (441)
-....+..+.-...+++..+. .+-++..-.+++.-+.+.|+.++|.++..+-.+.+..|+. ...-.+.+-++.+.
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~ 312 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEP 312 (400)
T ss_pred HHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchH
Confidence 887777788877788877653 4456777778888999999999999999999988887762 22334667788887
Q ss_pred HHHHHHHHh-hCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107 301 ALKVYEKMK-SDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC 379 (441)
Q Consensus 301 a~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 379 (441)
-.+..+.-. ..+-.|+. +.++-..|.+++.+.+|.+.|+.-. ...|+..+|+-+-+++.
T Consensus 313 l~k~~e~~l~~h~~~p~L------------------~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~ 372 (400)
T COG3071 313 LIKAAEKWLKQHPEDPLL------------------LSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALD 372 (400)
T ss_pred HHHHHHHHHHhCCCChhH------------------HHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHH
Confidence 777777654 46767743 8888899999999999999999655 45899999999999999
Q ss_pred hcCChhhHHHHHHHH
Q 036107 380 HKKRMKDGMLVLNLM 394 (441)
Q Consensus 380 ~~g~~~~a~~~~~~~ 394 (441)
+.|+..+|.++.+.-
T Consensus 373 ~~g~~~~A~~~r~e~ 387 (400)
T COG3071 373 QLGEPEEAEQVRREA 387 (400)
T ss_pred HcCChHHHHHHHHHH
Confidence 999999998865533
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.13 E-value=2.9e-08 Score=94.57 Aligned_cols=280 Identities=14% Similarity=0.053 Sum_probs=200.1
Q ss_pred HHHHHHhhhhhHhhhhcCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHH
Q 036107 107 KVVEALKCFCFTWAKTQTGYMHT-PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLM 185 (441)
Q Consensus 107 ~~~~A~~~~~~~~~~~~~g~~p~-~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li 185 (441)
...+|+..|.- .....++ ......+-.+|...+++++|..+|+...+..+-.+. +.++|++++
T Consensus 334 ~~~~A~~~~~k-----lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~-----------~meiyST~L 397 (638)
T KOG1126|consen 334 NCREALNLFEK-----LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVK-----------GMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHh-----hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-----------chhHHHHHH
Confidence 44567777632 2222233 345566778888999999999999999986644332 788999988
Q ss_pred HHHHhcCCHHHHHHHH-HHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCH
Q 036107 186 DTLVKRNSVAHAYKVF-LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDF 263 (441)
Q Consensus 186 ~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~ 263 (441)
-.+-+.- ++..+ +.+-+..+-...+|.++-++|+-.++.+.|++.|++..+ +.| ...+|+.+-.-+....++
T Consensus 398 WHLq~~v----~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~ 471 (638)
T KOG1126|consen 398 WHLQDEV----ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEF 471 (638)
T ss_pred HHHHhhH----HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHH
Confidence 8765432 22222 222222345667899999999999999999999999987 446 678999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHH
Q 036107 264 RKVDYTLKEMQEKGCKPSVITCT---IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340 (441)
Q Consensus 264 ~~a~~l~~~m~~~g~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li 340 (441)
|.|...|+.... +|...|+ .+.-.|.+.++++.|+-.|+...+.+ |...+ .-..+.
T Consensus 472 d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsv---------------i~~~~g 530 (638)
T KOG1126|consen 472 DKAMKSFRKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSV---------------ILCHIG 530 (638)
T ss_pred HhHHHHHHhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchh---------------HHhhhh
Confidence 999999998655 3555555 46677999999999999999988864 32221 134445
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 036107 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEELEKK 419 (441)
Q Consensus 341 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~ 419 (441)
..+-+.|+.++|++++++.....- -|...--.-...+...+++++|.+.++.+++ +.|+ ...|..+.+.|.+.
T Consensus 531 ~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~~~~eal~~LEeLk~-----~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 531 RIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLGRYVEALQELEELKE-----LVPQESSVFALLGKIYKRL 604 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhcchHHHHHHHHHHHH-----hCcchHHHHHHHHHHHHHH
Confidence 566778888999999999875432 2222222334455567899999775555555 4565 45788888899999
Q ss_pred CCccHHHHHHHHHHHH
Q 036107 420 SLGNAKERIDELLTHA 435 (441)
Q Consensus 420 g~~~~a~~~~~~m~~~ 435 (441)
|+.+.|..=|.-+...
T Consensus 605 ~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 605 GNTDLALLHFSWALDL 620 (638)
T ss_pred ccchHHHHhhHHHhcC
Confidence 9999998877766544
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=2.7e-07 Score=80.70 Aligned_cols=225 Identities=11% Similarity=0.065 Sum_probs=150.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--CCC
Q 036107 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CIS 209 (441)
Q Consensus 132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~ 209 (441)
.|-+-++.+. +++.++|.++|-+|.+.++. +.++--+|-+.|-+.|.+|.|+++.+.+-+ +..
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d~~--------------t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT 102 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQEDPE--------------TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLT 102 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcCch--------------hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCc
Confidence 4444444443 56899999999999985422 455666788889999999999999998843 222
Q ss_pred CcH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HH
Q 036107 210 LSS--QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS----VI 283 (441)
Q Consensus 210 ~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~ 283 (441)
-+. ...-.|-.-|...|-++.|+++|..+.+.|. .-......|+..|-...+|++|.++-+++.+.|-.+. ..
T Consensus 103 ~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAq 181 (389)
T COG2956 103 FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQ 181 (389)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHH
Confidence 111 2233456778899999999999999987542 2355678899999999999999999999988765544 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 036107 284 TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS 363 (441)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 363 (441)
.|.-+-..+....+++.|...+....+.+-+- +.. --.+-..+...|+++.|.+.++...+++
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c-vRA----------------si~lG~v~~~~g~y~~AV~~~e~v~eQn 244 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQADKKC-VRA----------------SIILGRVELAKGDYQKAVEALERVLEQN 244 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc-eeh----------------hhhhhHHHHhccchHHHHHHHHHHHHhC
Confidence 56667777777888999999998887754221 111 1112233444555555555555555554
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHH
Q 036107 364 CKPDCETHARSLKMCCHKKRMKDGML 389 (441)
Q Consensus 364 ~~p~~~t~~~li~~~~~~g~~~~a~~ 389 (441)
..--..+...|..+|.+.|+.+++..
T Consensus 245 ~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 245 PEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 44444455555555555555555433
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=1.4e-07 Score=94.00 Aligned_cols=234 Identities=13% Similarity=0.043 Sum_probs=136.6
Q ss_pred ChHHHHHHHhhhhhHhhhhcCCCCCC-HHHHHHHHHHHH---------cCCChhHHHHHHHHHHHhcCCCccHHHHHHHH
Q 036107 104 SPDKVVEALKCFCFTWAKTQTGYMHT-PETYNAMVEALG---------KSKKFGLMWELVKEIDELSNGYVSLAAMSTVM 173 (441)
Q Consensus 104 ~~g~~~~A~~~~~~~~~~~~~g~~p~-~~~y~~li~~~~---------~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~ 173 (441)
..++.++|++.|+..- ...|+ ...|..+-.++. ..+++++|.+.+++..+..+.
T Consensus 273 ~~~~~~~A~~~~~~Al-----~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~----------- 336 (553)
T PRK12370 273 TPYSLQQALKLLTQCV-----NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN----------- 336 (553)
T ss_pred CHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-----------
Confidence 3456667777774222 23343 334444433322 223467777777777765422
Q ss_pred hhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-hhHHH
Q 036107 174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG-VSYTC 252 (441)
Q Consensus 174 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ 252 (441)
+...+..+-..+...|++++|...|++.-...+.+...+..+-..+...|++++|...+++..+. .|+. ..+..
T Consensus 337 ---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~ 411 (553)
T PRK12370 337 ---NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGIT 411 (553)
T ss_pred ---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHH
Confidence 56666677677777788888888887764444455666777777777788888888888877764 3432 22333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc
Q 036107 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332 (441)
Q Consensus 253 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 332 (441)
++..+...|++++|...+++..+...+-+...+..+-.++...|++++|...+.++... .|+...
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~------------- 476 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLI------------- 476 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHH-------------
Confidence 44445567777888887777665432223444566666677778888888877776543 222221
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHH
Q 036107 333 FLIYNTMISSACVRSEEGNALKLRQKIEE-DSCKPDCETHARSLKM 377 (441)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~ 377 (441)
..+.+...|+..| +.|...++++.+ ....|....+..++.+
T Consensus 477 --~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~ 518 (553)
T PRK12370 477 --AVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLV 518 (553)
T ss_pred --HHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHH
Confidence 1455555556666 366666666543 2233433333344443
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.08 E-value=5.9e-07 Score=88.55 Aligned_cols=323 Identities=10% Similarity=0.053 Sum_probs=220.6
Q ss_pred hhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHH
Q 036107 70 LKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLM 149 (441)
Q Consensus 70 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a 149 (441)
|++++|.+|+..+.+...... ..+..|..+|-+.|+.+.++..+ ....+-.+-|...|-.+-....+.|.++.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~--~ay~tL~~IyEqrGd~eK~l~~~----llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNP--IAYYTLGEIYEQRGDIEKALNFW----LLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred CCHHHHHHHHHHHHHhCccch--hhHHHHHHHHHHcccHHHHHHHH----HHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 778888888888888765544 46777888888888888888754 222223333667888888888888889999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHH-HH----HHHHHHHHh
Q 036107 150 WELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ-IF----DVLIHGWCK 224 (441)
Q Consensus 150 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~----~~li~~~~~ 224 (441)
.-.|.+..+..|. +...+---...|-+.|+...|.+-|.++-.-.+|... -+ -.+++.|..
T Consensus 227 ~~cy~rAI~~~p~--------------n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 227 RYCYSRAIQANPS--------------NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHHHHhcCCc--------------chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 8888888775422 3334444456777888888888888887433333222 12 234556666
Q ss_pred cCCHHHHHHHHHHHhhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------------------
Q 036107 225 TRKSDYAQKAMKEMFQH-GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC------------------------- 278 (441)
Q Consensus 225 ~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~------------------------- 278 (441)
.++-+.|.+.++..... +-.-+...++.+...+.+...++.|......+.....
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 77778888888777652 2233556777888888888888888888877765221
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHH
Q 036107 279 --KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356 (441)
Q Consensus 279 --~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~ 356 (441)
.++... .-++-++.+....+....+.....+..+.|+... ..|.-+..+|...|++.+|+++|
T Consensus 373 ~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~--------------dL~~d~a~al~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 373 ELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDV--------------DLYLDLADALTNIGKYKEALRLL 437 (895)
T ss_pred CCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhH--------------HHHHHHHHHHHhcccHHHHHHHH
Confidence 222222 2233444555555555555666666554443322 33777888899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCccHHHHHHHHH
Q 036107 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE-STHKMLAEELEKKSLGNAKERIDELL 432 (441)
Q Consensus 357 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m 432 (441)
..+.....--+...|-.+-.+|...|.+++|.+.++..-. ..|+. ..--.|-..+.+.|+.++|.+.++.|
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~-----~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI-----LAPDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 9998765555677899999999999999999886665544 34433 34455666778999999999888775
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.1e-06 Score=80.43 Aligned_cols=286 Identities=11% Similarity=0.050 Sum_probs=207.4
Q ss_pred hhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCC-CCHHHHHHHHHHHHc
Q 036107 64 ASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYM-HTPETYNAMVEALGK 142 (441)
Q Consensus 64 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~-p~~~~y~~li~~~~~ 142 (441)
.++......+++..=.......|+.... .+-+....+.-...+++.|+.+|+..... ..++ -|..+|+.++-.--.
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~-~i~~~~A~~~y~~rDfD~a~s~Feei~kn--DPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSM-YIKTQIAAASYNQRDFDQAESVFEEIRKN--DPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccH-HHHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcchhHHHHhHHHHHHhh
Confidence 3444444455555555555666666665 67777777888889999999999755433 1222 167899988844433
Q ss_pred CCChh-HHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHH
Q 036107 143 SKKFG-LMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG 221 (441)
Q Consensus 143 ~~~~~-~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 221 (441)
..++. .|..+++- .++-++|+-++-+-|+-.++.|+|...|++.-+-.+.....|+.+-+-
T Consensus 312 ~skLs~LA~~v~~i------------------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHE 373 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNI------------------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHE 373 (559)
T ss_pred hHHHHHHHHHHHHh------------------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHH
Confidence 22222 12222211 233678889999999999999999999998855556677789999999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036107 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301 (441)
Q Consensus 222 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 301 (441)
|...++...|.+-|+...+-. +.|-..|-.|-.+|.-.+...-|+-.|++..+.. +-|...|.+|-++|.+.++.++|
T Consensus 374 yvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eA 451 (559)
T KOG1155|consen 374 YVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEA 451 (559)
T ss_pred HHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHH
Confidence 999999999999999988743 3577899999999999999999999999987752 34789999999999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCC-HH-HHHHHH
Q 036107 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE----DSCKPD-CE-THARSL 375 (441)
Q Consensus 302 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~-t~~~li 375 (441)
++.|......|-. +.. .+..+-..|-+.++.++|-..|++..+ .|..-+ .. .-.-|.
T Consensus 452 iKCykrai~~~dt-e~~----------------~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA 514 (559)
T KOG1155|consen 452 IKCYKRAILLGDT-EGS----------------ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLA 514 (559)
T ss_pred HHHHHHHHhcccc-chH----------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 9999999887633 222 378888888888999999988877654 343222 21 222233
Q ss_pred HHHHhcCChhhHHH
Q 036107 376 KMCCHKKRMKDGML 389 (441)
Q Consensus 376 ~~~~~~g~~~~a~~ 389 (441)
.-+.+.+++++|..
T Consensus 515 ~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 515 EYFKKMKDFDEASY 528 (559)
T ss_pred HHHHhhcchHHHHH
Confidence 45557777777744
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=98.99 E-value=1.5e-06 Score=86.68 Aligned_cols=264 Identities=10% Similarity=0.031 Sum_probs=174.0
Q ss_pred CCHHHHHHHHHHHHcC-----CChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHH---------hcCC
Q 036107 128 HTPETYNAMVEALGKS-----KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLV---------KRNS 193 (441)
Q Consensus 128 p~~~~y~~li~~~~~~-----~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~ 193 (441)
.+...|...+.+-... +++++|.++|++..+..|. +...|..+-.++. ..++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~--------------~a~a~~~La~~~~~~~~~g~~~~~~~ 319 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN--------------SIAPYCALAECYLSMAQMGIFDKQNA 319 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHHHHHHHcCCcccchH
Confidence 3566676776664221 3467899999998886543 3344444433332 3355
Q ss_pred HHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036107 194 VAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDYTLKE 272 (441)
Q Consensus 194 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~ 272 (441)
+++|...+++.-...+-+...+..+-..+...|++++|...|++..+.+ |+ ...|..+-..+...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8999999998865556677888888888999999999999999998854 54 56788888899999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHH
Q 036107 273 MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA 352 (441)
Q Consensus 273 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a 352 (441)
..+.... +...+..++..+...|++++|...+++..+.. .|+.. ..+..+-..+...|+.++|
T Consensus 398 Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~---------------~~~~~la~~l~~~G~~~eA 460 (553)
T PRK12370 398 CLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNP---------------ILLSMQVMFLSLKGKHELA 460 (553)
T ss_pred HHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCH---------------HHHHHHHHHHHhCCCHHHH
Confidence 9886433 22233444555777899999999999987653 23221 1256677778889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 036107 353 LKLRQKIEEDSCKPDCETHA-RSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431 (441)
Q Consensus 353 ~~~~~~m~~~g~~p~~~t~~-~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 431 (441)
...+.++... .|+..+.. .+...++..|+ .+...++.+.+.. +..|...-... ..+.-.|+-+.+..+ +.
T Consensus 461 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~--~~~~~~~~~~~--~~~~~~g~~~~~~~~-~~ 531 (553)
T PRK12370 461 RKLTKEISTQ--EITGLIAVNLLYAEYCQNSE--RALPTIREFLESE--QRIDNNPGLLP--LVLVAHGEAIAEKMW-NK 531 (553)
T ss_pred HHHHHHhhhc--cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHh--hHhhcCchHHH--HHHHHHhhhHHHHHH-HH
Confidence 9999987543 55544443 44445566663 6655444333322 22232222233 334444555554444 44
Q ss_pred HH
Q 036107 432 LT 433 (441)
Q Consensus 432 m~ 433 (441)
+.
T Consensus 532 ~~ 533 (553)
T PRK12370 532 FK 533 (553)
T ss_pred hh
Confidence 43
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.98 E-value=1.1e-06 Score=76.97 Aligned_cols=169 Identities=12% Similarity=0.070 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcH
Q 036107 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS 212 (441)
Q Consensus 133 y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 212 (441)
--+|-+.|.+.|..+.|+.+-....+.. ..+..- -..+.--|-.-|...|-++.|+.+|..+.+.-..-.
T Consensus 72 ~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-dlT~~q---------r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~ 141 (389)
T COG2956 72 HLTLGNLFRSRGEVDRAIRIHQTLLESP-DLTFEQ---------RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAE 141 (389)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCC-CCchHH---------HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhH
Confidence 3344444555555555555555555432 222100 112223344445555555555555555533112222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG----VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288 (441)
Q Consensus 213 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 288 (441)
.....|+..|-+..+|++|.++-+++.+.|-.+.. ..|--+-..+....+++.|..+++...+.+.+ .+..--.+
T Consensus 142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~l 220 (389)
T COG2956 142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIIL 220 (389)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhh
Confidence 23455555555555555555555555544333221 23334444444445555555555554443211 11111222
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCC
Q 036107 289 MHALEKAKQIYEALKVYEKMKSDD 312 (441)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~m~~~g 312 (441)
-+.....|+++.|.+.++...+.+
T Consensus 221 G~v~~~~g~y~~AV~~~e~v~eQn 244 (389)
T COG2956 221 GRVELAKGDYQKAVEALERVLEQN 244 (389)
T ss_pred hHHHHhccchHHHHHHHHHHHHhC
Confidence 334445555555555555555543
No 49
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.97 E-value=9.4e-07 Score=84.81 Aligned_cols=248 Identities=16% Similarity=0.116 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhh----h--C-CCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CC
Q 036107 179 RAMSVLMDTLVKRNSVAHAYKVFLKFK----D--C-ISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQH-----G-FS 244 (441)
Q Consensus 179 ~~~~~li~~~~~~g~~~~a~~~~~~~~----~--~-~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~ 244 (441)
.+...|...|...|+++.|+.++.+.- + | ..|...+ .+.+-..|...+++++|..+|+++..- | -.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 555669999999999999999997752 1 1 2233322 333556788899999999999998742 2 11
Q ss_pred CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHH---c--CCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CC
Q 036107 245 PD-GVSYTCFIEHYCREKDFRKVDYTLKEMQE---K--GCK-PSV-ITCTIVMHALEKAKQIYEALKVYEKMKSD---DC 313 (441)
Q Consensus 245 p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~--g~~-p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~ 313 (441)
|. ..+++.|-..|.+.|++++|...++...+ . |.. |.+ .-++.+...|+..+++++|..++....+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22 35677777889999999999888887543 1 222 222 34567777899999999999999876441 12
Q ss_pred CCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHH----cCC--CCC-HHHHHHHHHHHHhcCChhh
Q 036107 314 LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE----DSC--KPD-CETHARSLKMCCHKKRMKD 386 (441)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~--~p~-~~t~~~li~~~~~~g~~~~ 386 (441)
.++..... .+++.|-..|...|++++|.+++++... .+. .+. ...++.+-..|.+.+.+++
T Consensus 360 g~~~~~~a------------~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 360 GEDNVNLA------------KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred cccchHHH------------HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence 22221100 3488899999999999999999998653 222 222 4567888889999999998
Q ss_pred HHHHHHHHHHHH-HCC--CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhh
Q 036107 387 GMLVLNLMREML-SKG--IVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQ 438 (441)
Q Consensus 387 a~~~~~~~~~m~-~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 438 (441)
|.++|..-.... ..| .+-...+|..|...|.+.|++++|.++.+...+..++
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 888776443333 222 2223458999999999999999999999998876654
No 50
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.91 E-value=1.6e-06 Score=86.26 Aligned_cols=96 Identities=5% Similarity=-0.085 Sum_probs=69.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036107 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418 (441)
Q Consensus 339 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 418 (441)
+--.++..|++++|..+|.+..+... -+..+|-.+-++|...|++..|.++|+..-+ ...-.-+..+...|.+++.+
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk--kf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK--KFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH--HhcccCCHHHHHHHHHHHHH
Confidence 44455677888888888888877653 2334567788888888999888887665544 33455577788888899999
Q ss_pred cCCccHHHHHHHHHHHHhh
Q 036107 419 KSLGNAKERIDELLTHATE 437 (441)
Q Consensus 419 ~g~~~~a~~~~~~m~~~~~ 437 (441)
+|.+.+|.+....-.+...
T Consensus 729 ~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred hhhHHHHHHHHHHHHHhCC
Confidence 9998888887766554443
No 51
>PF12854 PPR_1: PPR repeat
Probab=98.89 E-value=2.3e-09 Score=62.33 Aligned_cols=32 Identities=31% Similarity=0.611 Sum_probs=14.2
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273 (441)
Q Consensus 242 g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 273 (441)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=4.3e-07 Score=86.77 Aligned_cols=252 Identities=13% Similarity=0.033 Sum_probs=184.7
Q ss_pred ChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCCCcHHHHHHHHHH
Q 036107 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CISLSSQIFDVLIHG 221 (441)
Q Consensus 145 ~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~li~~ 221 (441)
+..+|..+|......... +.++..-+-.+|-..+++++|+++|+.+++ -..-+..+|++.+-.
T Consensus 334 ~~~~A~~~~~klp~h~~n--------------t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWH 399 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN--------------TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWH 399 (638)
T ss_pred HHHHHHHHHHhhHHhcCC--------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHH
Confidence 467788888886553311 457777888999999999999999999954 233467788888765
Q ss_pred HHhcCCH-HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 036107 222 WCKTRKS-DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300 (441)
Q Consensus 222 ~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 300 (441)
+-+.-.. -.|..+.+.++ -.+.+|-++-++|.-+++.+.|++.|++..+.... ..++|+.+-+-+.....+|.
T Consensus 400 Lq~~v~Ls~Laq~Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~ 473 (638)
T KOG1126|consen 400 LQDEVALSYLAQDLIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDK 473 (638)
T ss_pred HHhhHHHHHHHHHHHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHh
Confidence 5443221 12334444433 35789999999999999999999999998875322 67899998888999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 036107 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD-CETHARSLKMCC 379 (441)
Q Consensus 301 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~ 379 (441)
|...|+.... .|...||+ |--+-..|.+.++.+.|+-.|++..+ +.|. .+....+-..+.
T Consensus 474 a~~~fr~Al~----~~~rhYnA-------------wYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~ 534 (638)
T KOG1126|consen 474 AMKSFRKALG----VDPRHYNA-------------WYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQH 534 (638)
T ss_pred HHHHHHhhhc----CCchhhHH-------------HHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHH
Confidence 9999987764 46666655 66777889999999999999998775 4554 445556666777
Q ss_pred hcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhhc
Q 036107 380 HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQR 439 (441)
Q Consensus 380 ~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 439 (441)
+.|+.++|.+ ++++.....-+-...-|. -...+...+++++|...+++++....+.
T Consensus 535 ~~k~~d~AL~---~~~~A~~ld~kn~l~~~~-~~~il~~~~~~~eal~~LEeLk~~vP~e 590 (638)
T KOG1126|consen 535 QLKRKDKALQ---LYEKAIHLDPKNPLCKYH-RASILFSLGRYVEALQELEELKELVPQE 590 (638)
T ss_pred HhhhhhHHHH---HHHHHHhcCCCCchhHHH-HHHHHHhhcchHHHHHHHHHHHHhCcch
Confidence 8899999966 565654433333333333 3455778899999999999998766543
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.87 E-value=8.3e-07 Score=85.17 Aligned_cols=249 Identities=13% Similarity=0.069 Sum_probs=174.8
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhh--hcCCCC-CCHH-HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCC-
Q 036107 89 TDVDKVSEILRKRYPSPDKVVEALKCFCFTWAK--TQTGYM-HTPE-TYNAMVEALGKSKKFGLMWELVKEIDELSNGY- 163 (441)
Q Consensus 89 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~g~~-p~~~-~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~- 163 (441)
|....+...|..+|...|+++.|..+|...-.. ...|.. |... ..+.+-..|...+++++|..+|+++.......
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333467777889999999999999999844333 233422 2222 23334567788899999999999988643110
Q ss_pred -ccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh----hh---CCCCcHH-HHHHHHHHHHhcCCHHHHHHH
Q 036107 164 -VSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF----KD---CISLSSQ-IFDVLIHGWCKTRKSDYAQKA 234 (441)
Q Consensus 164 -~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~---~~~~~~~-~~~~li~~~~~~~~~~~a~~~ 234 (441)
..+.. -..+++.|-.+|.+.|++++|...++.. ++ ...|.+. -++.+...++..+.+++|..+
T Consensus 276 G~~h~~--------va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l 347 (508)
T KOG1840|consen 276 GEDHPA--------VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKL 347 (508)
T ss_pred CCCCHH--------HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 11000 2356777777899999999999988765 22 1223332 256677788889999999998
Q ss_pred HHHHhhC---CCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC--CC-CHHHHHHHHHHHHhcCCHHH
Q 036107 235 MKEMFQH---GFSPD----GVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GC--KP-SVITCTIVMHALEKAKQIYE 300 (441)
Q Consensus 235 ~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~--~p-~~~~~~~ll~~~~~~~~~~~ 300 (441)
+....+. -+.++ ..+++.|-..|...|++++|.++|++..+. +- .+ ....++.|-..|.+.+++++
T Consensus 348 ~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 348 LQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence 8766532 11222 368999999999999999999999987542 11 22 24567888899999999999
Q ss_pred HHHHHHHHhh----CCCC-CCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHH
Q 036107 301 ALKVYEKMKS----DDCL-TDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360 (441)
Q Consensus 301 a~~~~~~m~~----~g~~-~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 360 (441)
|.++|.+... .|.. |+.. .+|..|...|.+.|+++.|+++.+...
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~~~---------------~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPDVT---------------YTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCchH---------------HHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9999987543 3332 2332 358889999999999999999987764
No 54
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.84 E-value=3.1e-06 Score=84.25 Aligned_cols=275 Identities=13% Similarity=0.072 Sum_probs=188.4
Q ss_pred HhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCH-------HHHHHHHHHHHcCCChhHHHHHH
Q 036107 81 HALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTP-------ETYNAMVEALGKSKKFGLMWELV 153 (441)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~-------~~y~~li~~~~~~~~~~~a~~l~ 153 (441)
.+.+.+....+ .+.|-+...+-..|.+..|+..|+........-..+|. .-||. -..+-..++++.|.+++
T Consensus 442 ~L~~~~~~ip~-E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl-arl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 442 ILESKGKQIPP-EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL-ARLLEELHDTEVAEEMY 519 (1018)
T ss_pred HHHHcCCCCCH-HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH-HHHHHhhhhhhHHHHHH
Confidence 33444444443 45666666666777777777777643333111112222 12332 23334446777788888
Q ss_pred HHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 036107 154 KEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQK 233 (441)
Q Consensus 154 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 233 (441)
..+.+..|++. ..|-.+.-..-..+...+|...+...-.....+...++.+-..|.+...+..|.+
T Consensus 520 k~Ilkehp~YI--------------d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 520 KSILKEHPGYI--------------DAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred HHHHHHCchhH--------------HHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc
Confidence 87777554432 2333333333345788888888888755555555567777778888889998988
Q ss_pred HHHHHhhC-CCCCCHhhHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 036107 234 AMKEMFQH-GFSPDGVSYTCFIEHYCR------------EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300 (441)
Q Consensus 234 ~~~~m~~~-g~~p~~~~~~~li~~~~~------------~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 300 (441)
-|+...+. -..+|+.+.-+|-+.|.+ .+..++|+++|.+..+...+ |.+.-|.+--.++..|++++
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchH
Confidence 77666543 122566666666665543 34577899999998876443 77888888888999999999
Q ss_pred HHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHH
Q 036107 301 ALKVYEKMKSDDC-LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE-EDSCKPDCETHARSLKMC 378 (441)
Q Consensus 301 a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~t~~~li~~~ 378 (441)
|..||.+..+... .+| +|-.+-+.|+..|++..|+++|+... ...-+-+....+-|-+++
T Consensus 665 A~dIFsqVrEa~~~~~d------------------v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 665 ARDIFSQVREATSDFED------------------VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred HHHHHHHHHHHHhhCCc------------------eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 9999999998765 333 38899999999999999999998754 555566778888899999
Q ss_pred HhcCChhhHHHH
Q 036107 379 CHKKRMKDGMLV 390 (441)
Q Consensus 379 ~~~g~~~~a~~~ 390 (441)
-+.|.+.+|.+.
T Consensus 727 y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 727 YEAGKLQEAKEA 738 (1018)
T ss_pred HHhhhHHHHHHH
Confidence 999999999874
No 55
>PF12854 PPR_1: PPR repeat
Probab=98.84 E-value=5.3e-09 Score=60.78 Aligned_cols=34 Identities=32% Similarity=0.730 Sum_probs=32.4
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 276 KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309 (441)
Q Consensus 276 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 309 (441)
.|+.||..||++||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999984
No 56
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=3.6e-06 Score=76.92 Aligned_cols=260 Identities=11% Similarity=0.025 Sum_probs=147.7
Q ss_pred HHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCcHHHHHH
Q 036107 139 ALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK-RNSVAHAYKVFLKFKDCISLSSQIFDV 217 (441)
Q Consensus 139 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~ 217 (441)
-+.++|+++.|.+++.-..+..+...+ ...-|.-+--|.+ -.++..|.+.-+..-+.-+-+......
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~s------------aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~n 495 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTAS------------AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTN 495 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhH------------HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhc
Confidence 467889999999999888876522221 1111111111222 234444444443332111111111111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036107 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE---HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294 (441)
Q Consensus 218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~---~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 294 (441)
--+...-+|++++|.+.|.+.... |..+-.+|.+ .+-..|++++|++.|-.+..- +.-+.....-+.+.|--
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYEL 570 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Confidence 111122346666666666666543 2222222221 234456666666666555332 11244455555556666
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc------------------chHHHHHHHHHhcCChhHHHHHH
Q 036107 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------------LIYNTMISSACVRSEEGNALKLR 356 (441)
Q Consensus 295 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~------------------~~~~~li~~~~~~g~~~~a~~~~ 356 (441)
..++..|.+++.+.... ++.|..+...|-+.|-+.|+. .+...|-.-|....-+++++..|
T Consensus 571 led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred hhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66666666666554432 344555666666666666655 33444556667777788999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHH-hcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 036107 357 QKIEEDSCKPDCETHARSLKMCC-HKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLG 422 (441)
Q Consensus 357 ~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 422 (441)
++.- -++|+..-|-.+|..|. +.|++.+|.+ ++++. .+.++-|......|++.+...|..
T Consensus 650 ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d---~yk~~-hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 650 EKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFD---LYKDI-HRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHH--hcCccHHHHHHHHHHHHHhcccHHHHHH---HHHHH-HHhCccchHHHHHHHHHhccccch
Confidence 8753 46999999999888665 6799999966 45443 336788888999999988887743
No 57
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.81 E-value=8.9e-06 Score=80.49 Aligned_cols=361 Identities=11% Similarity=0.024 Sum_probs=245.3
Q ss_pred cchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHH
Q 036107 32 RHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEA 111 (441)
Q Consensus 32 ~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 111 (441)
+|++. +|.++..-.-+..+. ....|.++-...-+.|+.+.+... .+...+..|.....+..+.....+.|.+..|
T Consensus 152 rg~~e-eA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~--~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 152 RGDLE-EAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNF--WLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred hCCHH-HHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHH--HHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 47776 777777633333222 234455555555566655554443 3444444444446777777888889999999
Q ss_pred HhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhc
Q 036107 112 LKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR 191 (441)
Q Consensus 112 ~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 191 (441)
.-.|...-.. ..++...+-.-+..|-+.|+...|.+.|.++....| ++++.-+. ..-...++.+...
T Consensus 227 ~~cy~rAI~~----~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~--------d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 227 RYCYSRAIQA----NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIE--------DLIRRVAHYFITH 293 (895)
T ss_pred HHHHHHHHhc----CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHH--------HHHHHHHHHHHHh
Confidence 9888533222 223455555567789999999999999999998763 22222111 1223346667777
Q ss_pred CCHHHHHHHHHHhhh--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--------------------------
Q 036107 192 NSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF-------------------------- 243 (441)
Q Consensus 192 g~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------------------------- 243 (441)
++.+.|.+.++..-. +-..+...++.++..|.+...++.|.....++.....
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 888999999887632 5566777899999999999999999999988877222
Q ss_pred -CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 036107 244 -SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP--SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320 (441)
Q Consensus 244 -~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 320 (441)
.++..+ --++-+....+..+....+.....+....| +...|.-+..++...|++.+|..+|..+...-.--+..
T Consensus 374 ~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~-- 450 (895)
T KOG2076|consen 374 LSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF-- 450 (895)
T ss_pred CCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh--
Confidence 222222 122334445555566666666666666443 46778899999999999999999999998764333333
Q ss_pred HHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHH--
Q 036107 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE-THARSLKMCCHKKRMKDGMLVLNLMREM-- 397 (441)
Q Consensus 321 ~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~~~~m-- 397 (441)
.|-.+-.+|-..|.+++|++.|+..... .|+.. .-.+|-..+-+.|+.++|.+ .+.++
T Consensus 451 --------------vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalE---tL~~~~~ 511 (895)
T KOG2076|consen 451 --------------VWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALE---TLEQIIN 511 (895)
T ss_pred --------------hhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHH---HHhcccC
Confidence 3888999999999999999999998754 55543 23344456678899999866 55553
Q ss_pred ------HHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 036107 398 ------LSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432 (441)
Q Consensus 398 ------~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 432 (441)
...++.|+...-....+.+...|+.++-..+..+|
T Consensus 512 ~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 512 PDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred CCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 23457777888788888889999888866655554
No 58
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.81 E-value=3.3e-05 Score=72.90 Aligned_cols=278 Identities=9% Similarity=-0.062 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL 210 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 210 (441)
..|..+-..+...|+.+.+...+....+..+...+ ...........+...|++++|.+++++.-...+.
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~ 75 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT-----------ERERAHVEALSAWIAGDLPKALALLEQLLDDYPR 75 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 35555666666677788877666665554322221 1122223334556789999999999887544444
Q ss_pred cHHHHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036107 211 SSQIFDVLIHGWC----KTRKSDYAQKAMKEMFQHGFSPDG-VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285 (441)
Q Consensus 211 ~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 285 (441)
+...+.. ...+. ..+..+.+.+.++. ..+..|+. .....+-..+...|++++|...+++..+.. +.+...+
T Consensus 76 ~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~ 151 (355)
T cd05804 76 DLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAV 151 (355)
T ss_pred cHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHH
Confidence 5545542 22222 24555566666654 11222333 344455567888999999999999998864 3356778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036107 286 TIVMHALEKAKQIYEALKVYEKMKSDDC-LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC 364 (441)
Q Consensus 286 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 364 (441)
..+-..+...|++++|...+++..+..- .|+... ..|..+...+...|+.++|+.++++......
T Consensus 152 ~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~--------------~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 152 HAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRG--------------HNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhH--------------HHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 8888899999999999999998876432 222211 1256677888999999999999999854322
Q ss_pred -CCCHHHH-H--HHHHHHHhcCChhhHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhh
Q 036107 365 -KPDCETH-A--RSLKMCCHKKRMKDGMLVLNLMREMLSKGI--VPQESTHKMLAEELEKKSLGNAKERIDELLTHATEQ 438 (441)
Q Consensus 365 -~p~~~t~-~--~li~~~~~~g~~~~a~~~~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 438 (441)
.+..... + .++.-+...|..+.+.+ |+.+........ ......-.....++...|+.++|..+++.+....+.
T Consensus 218 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~ 296 (355)
T cd05804 218 ESDPALDLLDAASLLWRLELAGHVDVGDR-WEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASS 296 (355)
T ss_pred CCChHHHHhhHHHHHHHHHhcCCCChHHH-HHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 2222211 1 33344445555554444 322322211111 111222235666778899999999999998776543
No 59
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.77 E-value=4.8e-05 Score=71.82 Aligned_cols=270 Identities=9% Similarity=-0.031 Sum_probs=159.9
Q ss_pred HHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHH---HHHHHHhcCCHHHHHHHHHHhhhCCCCcHHH
Q 036107 138 EALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV---LMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214 (441)
Q Consensus 138 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 214 (441)
..+...|++++|.+++++..+..|. |...+.. ........+..+.+.+.+.......+.....
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~P~--------------~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 116 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDYPR--------------DLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYL 116 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC--------------cHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHH
Confidence 3456779999999999998875422 3333332 1112223455666666665532233333444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHH
Q 036107 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC-KPSV--ITCTIVMHA 291 (441)
Q Consensus 215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~--~~~~~ll~~ 291 (441)
...+...+...|++++|.+.+++..+.. +.+...+..+-..+...|++++|...+++..+... .|+. ..|..+...
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 5556678889999999999999999864 33456778888899999999999999999876532 2332 346678888
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHH--HHHHHHcCC--CCC
Q 036107 292 LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL--RQKIEEDSC--KPD 367 (441)
Q Consensus 292 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~--~~~m~~~g~--~p~ 367 (441)
+...|++++|..++++.......+.... .+. ....++.-+...|....+.+. +........ ...
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~--~~~----------~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~ 263 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPAL--DLL----------DAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGL 263 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHH--HHh----------hHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccc
Confidence 9999999999999999864332111110 000 000222233333433333222 111111110 111
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC---CCCCCHHHHHHHHHH--HHhcCCccHHHHHHHHHHH
Q 036107 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSK---GIVPQESTHKMLAEE--LEKKSLGNAKERIDELLTH 434 (441)
Q Consensus 368 ~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~---~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~m~~ 434 (441)
.........++...|+.+.|..+++-+....+. .-.....+-..++.+ +.+.|++++|.+.+.....
T Consensus 264 ~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 264 AFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222235667778889999998866555443333 111111223333444 4588999999988876543
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.76 E-value=9.8e-06 Score=78.76 Aligned_cols=292 Identities=11% Similarity=0.059 Sum_probs=194.7
Q ss_pred hcCCChHHHHHHHhhhhhHhhhhcCCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCH
Q 036107 100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTP-ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT 178 (441)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~-~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~ 178 (441)
.++...|+.++|++.+.. .....+|. ......-..+.+.|+.++|..++..+...+|. +.
T Consensus 12 ~il~e~g~~~~AL~~L~~-----~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd--------------n~ 72 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEK-----NEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD--------------NY 72 (517)
T ss_pred HHHHHCCCHHHHHHHHHh-----hhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--------------cH
Confidence 344667999999998842 22333454 45667778889999999999999999986522 33
Q ss_pred HHHHHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhCCCCCCHhhHHH
Q 036107 179 RAMSVLMDTLVK-----RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSD-YAQKAMKEMFQHGFSPDGVSYTC 252 (441)
Q Consensus 179 ~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g~~p~~~~~~~ 252 (441)
.-|..+..+..- ....+...++|+++.... |.......+.-.+..-..+. .+...+..+...|++ .+|+.
T Consensus 73 ~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~ 148 (517)
T PF12569_consen 73 DYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSN 148 (517)
T ss_pred HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHH
Confidence 444444454422 236788888998885544 43333333333333222332 455566777777764 34666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 253 FIEHYCREKDFRKVDYTLKEMQEK----G----------CKPSVI--TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 253 li~~~~~~g~~~~a~~l~~~m~~~----g----------~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 316 (441)
|-.-|....+.+-..+++...... | -+|+.. ++.-+-+.|...|++++|.++.+..++. .|+
T Consensus 149 lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt 226 (517)
T PF12569_consen 149 LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPT 226 (517)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCC
Confidence 666666666666666666665432 1 234443 4466678899999999999999999887 354
Q ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 036107 317 TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396 (441)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 396 (441)
.. ..|..-...|-+.|++.+|.+.++...... .-|.+.=+-....+.+.|++++|.+++.+|.+
T Consensus 227 ~~---------------ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 227 LV---------------ELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred cH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 33 227777778889999999999999887654 44666777778888899999999998777765
Q ss_pred HHHCCCCCCHHH--------HHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107 397 MLSKGIVPQEST--------HKMLAEELEKKSLGNAKERIDELLTHA 435 (441)
Q Consensus 397 m~~~~~~p~~~~--------~~~ll~~~~~~g~~~~a~~~~~~m~~~ 435 (441)
.+..|-... ..-.-.+|.+.|++..|.+-+..+.+.
T Consensus 291 ---~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 291 ---EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred ---CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 332332211 133446678899999999888776654
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=1.8e-06 Score=75.66 Aligned_cols=227 Identities=9% Similarity=-0.032 Sum_probs=155.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHH
Q 036107 134 NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213 (441)
Q Consensus 134 ~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 213 (441)
+-+-++|.+.|-+.+|..-|..-.+.. +-+.||..|-.+|.+..+.+.|+.+|.+--+.++-++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~---------------~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT 291 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF---------------PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT 291 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC---------------CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh
Confidence 345566777788888887777655522 25567777788888888888888888776555555554
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293 (441)
Q Consensus 214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 293 (441)
....+-+.+-..++.++|.++|+...+.. ..++....++-.+|.-.++.+.|+..++++.+.|+. +...|+.+--+|.
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~ 369 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCL 369 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHH
Confidence 44555666777778888888888776542 335666667777777788888888888888888876 6777777777788
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 036107 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373 (441)
Q Consensus 294 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 373 (441)
-.+++|-+..-|.+....--.|+... .+|-.+-...+..|+...|.+.|+-..... .-+...++.
T Consensus 370 yaqQ~D~~L~sf~RAlstat~~~~aa--------------DvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnN 434 (478)
T KOG1129|consen 370 YAQQIDLVLPSFQRALSTATQPGQAA--------------DVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNN 434 (478)
T ss_pred hhcchhhhHHHHHHHHhhccCcchhh--------------hhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHh
Confidence 88888888877777665433333322 235556566666777788887777765443 223456666
Q ss_pred HHHHHHhcCChhhHHHHHH
Q 036107 374 SLKMCCHKKRMKDGMLVLN 392 (441)
Q Consensus 374 li~~~~~~g~~~~a~~~~~ 392 (441)
|--.-.+.|++++|+.+++
T Consensus 435 LavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 435 LAVLAARSGDILGARSLLN 453 (478)
T ss_pred HHHHHhhcCchHHHHHHHH
Confidence 6666667788888877444
No 62
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=9.9e-06 Score=74.15 Aligned_cols=208 Identities=12% Similarity=0.038 Sum_probs=155.5
Q ss_pred cCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHH
Q 036107 142 KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG 221 (441)
Q Consensus 142 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 221 (441)
-+|++++|.+.+.+..... ..+....||+ --.+-..|++++|++.|-.+..-+.-+..+.-.+.+.
T Consensus 502 ~ngd~dka~~~ykeal~nd-------------asc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qiani 567 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNND-------------ASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANI 567 (840)
T ss_pred ecCcHHHHHHHHHHHHcCc-------------hHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3578888888888877643 1112223332 2245567999999999988866556677777778888
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036107 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301 (441)
Q Consensus 222 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 301 (441)
|--..+...|.+++-+.... ++-|+.....|-.-|-+.|+-.+|.+.+-+--. -.+.|..|...|-..|....-++++
T Consensus 568 ye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~eka 645 (840)
T KOG2003|consen 568 YELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKA 645 (840)
T ss_pred HHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHH
Confidence 88888888999988776553 555778888888999999999999887655432 3566788888888888888888999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHH-HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036107 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMIS-SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH 380 (441)
Q Consensus 302 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 380 (441)
..+|+...- +.|+..- |..||. ++.+.|++++|.++++.... .+.-|......|++.|..
T Consensus 646 i~y~ekaal--iqp~~~k----------------wqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~d 706 (840)
T KOG2003|consen 646 INYFEKAAL--IQPNQSK----------------WQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHHHh--cCccHHH----------------HHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhcc
Confidence 999987654 5677765 777775 44567999999999999764 467788888889998888
Q ss_pred cCCh
Q 036107 381 KKRM 384 (441)
Q Consensus 381 ~g~~ 384 (441)
.|.-
T Consensus 707 lgl~ 710 (840)
T KOG2003|consen 707 LGLK 710 (840)
T ss_pred ccch
Confidence 8753
No 63
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.67 E-value=5e-05 Score=69.47 Aligned_cols=210 Identities=13% Similarity=0.006 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 209 (441)
...|..+-..+.+.|++++|...|++..+..+. +...|+.+-..+...|++++|.+.|+..-+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~--------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P 129 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPD--------------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP 129 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 356777777888999999999999998885532 678999999999999999999999988855444
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 289 (441)
-+...|..+..++...|++++|.+.|+...+. .|+..........+...++.++|...|++..... .|+...+ .
T Consensus 130 ~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~-- 203 (296)
T PRK11189 130 TYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N-- 203 (296)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--
Confidence 56777888888899999999999999998874 3544322222223445678999999997755432 2332222 2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 036107 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369 (441)
Q Consensus 290 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 369 (441)
......|+.+.+ +.+..+.+.. ..+...-...- ..|..+-..+.+.|++++|+..|++..+.. .||..
T Consensus 204 ~~~~~lg~~~~~-~~~~~~~~~~-~~~~~l~~~~~---------ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~ 271 (296)
T PRK11189 204 IVEFYLGKISEE-TLMERLKAGA-TDNTELAERLC---------ETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFV 271 (296)
T ss_pred HHHHHccCCCHH-HHHHHHHhcC-CCcHHHHHHHH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHH
Confidence 223345666554 3555554321 11111000111 237778888899999999999999988654 33444
Q ss_pred HH
Q 036107 370 TH 371 (441)
Q Consensus 370 t~ 371 (441)
-+
T Consensus 272 e~ 273 (296)
T PRK11189 272 EH 273 (296)
T ss_pred HH
Confidence 33
No 64
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=0.00018 Score=66.65 Aligned_cols=340 Identities=11% Similarity=0.057 Sum_probs=196.6
Q ss_pred HHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCCh
Q 036107 67 VESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKF 146 (441)
Q Consensus 67 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~ 146 (441)
.+.+...+|+-+++..+..=.. ++.+.--.+.+--..|++.-|.++|. .|. ...|+...|++.|..-.+...+
T Consensus 118 mknk~vNhARNv~dRAvt~lPR--VdqlWyKY~ymEE~LgNi~gaRqife-rW~----~w~P~eqaW~sfI~fElRykei 190 (677)
T KOG1915|consen 118 MKNKQVNHARNVWDRAVTILPR--VDQLWYKYIYMEEMLGNIAGARQIFE-RWM----EWEPDEQAWLSFIKFELRYKEI 190 (677)
T ss_pred HhhhhHhHHHHHHHHHHHhcch--HHHHHHHHHHHHHHhcccHHHHHHHH-HHH----cCCCcHHHHHHHHHHHHHhhHH
Confidence 3556788888888887765433 33444444445556678889999995 222 5679999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCcHHHHHHHHHHHH
Q 036107 147 GLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI---SLSSQIFDVLIHGWC 223 (441)
Q Consensus 147 ~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~li~~~~ 223 (441)
+.|.++++...-.. |++.+|--....=.++|.+..|.++|+...+.+ ..+...|.++...=.
T Consensus 191 eraR~IYerfV~~H---------------P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe 255 (677)
T KOG1915|consen 191 ERARSIYERFVLVH---------------PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEE 255 (677)
T ss_pred HHHHHHHHHHheec---------------ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99999999987633 244555555555555666666666665542211 111122222222222
Q ss_pred hcCCHHHHHHHH--------------------------------------------HHHhhCCCCCCHhhHHHHHHHHHh
Q 036107 224 KTRKSDYAQKAM--------------------------------------------KEMFQHGFSPDGVSYTCFIEHYCR 259 (441)
Q Consensus 224 ~~~~~~~a~~~~--------------------------------------------~~m~~~g~~p~~~~~~~li~~~~~ 259 (441)
++..++.|.-+| +++.+.+ +-|-.+|--.+.--..
T Consensus 256 ~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~ 334 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEES 334 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHh
Confidence 222333333222 2222211 2244555566666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH--
Q 036107 260 EKDFRKVDYTLKEMQEKGCKPSV-------ITCTIVMHAL---EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL-- 327 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~g~~p~~-------~~~~~ll~~~---~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-- 327 (441)
.|+.+...++|+..... ++|-. ..|--+=-+| ....+++.+.++|+...+ -++....|+..+=-+|
T Consensus 335 ~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~ 412 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQ 412 (677)
T ss_pred cCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHH
Confidence 78888888888887764 44421 1222111111 346788888888888777 2333444554442222
Q ss_pred -------------------HhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 036107 328 -------------------SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388 (441)
Q Consensus 328 -------------------~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 388 (441)
+++.+..+|..-|..-.+.++++.+-+++++..+-+ .-|..+|......=...|+.+.|.
T Consensus 413 feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 413 FEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHH
Confidence 222222455555666666677777777777776543 234455655555555667777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 036107 389 LVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTH 434 (441)
Q Consensus 389 ~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 434 (441)
.+|++-.+ +.........|.+.|+-=...|.+++|..+++.+..
T Consensus 492 aifelAi~--qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 492 AIFELAIS--QPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHhc--CcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 76665433 122223344555666655677888888888877543
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=1.1e-06 Score=77.02 Aligned_cols=231 Identities=9% Similarity=0.021 Sum_probs=181.3
Q ss_pred HHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHH
Q 036107 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM 173 (441)
Q Consensus 94 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~ 173 (441)
.-+-+.++|.+.|.+.+|..-|+ ......|-+.||-.+-+.|.+..+++.|+.++.+-... .|.
T Consensus 225 Wk~Q~gkCylrLgm~r~Aekqlq-----ssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~-------- 288 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQ-----SSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPF-------- 288 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHH-----HHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCc--------
Confidence 44456678888888888888774 22334577889999999999999999999999987763 231
Q ss_pred hhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 036107 174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253 (441)
Q Consensus 174 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 253 (441)
|+.-..-....+-.-++.++|.++|...-+-.+.++.....+-..|.-.++++-|++.|.++.+.|+. +...|+.+
T Consensus 289 ---~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~Ni 364 (478)
T KOG1129|consen 289 ---DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNI 364 (478)
T ss_pred ---hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhH
Confidence 23233334556666799999999999985555667777777778888899999999999999999986 78889998
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 036107 254 IEHYCREKDFRKVDYTLKEMQEKGCKPS--VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331 (441)
Q Consensus 254 i~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 331 (441)
--+|.-.+++|-++.-|.+....-..|+ ...|-.+-......|++..|.+.|+-....+-.- .
T Consensus 365 gLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h-~-------------- 429 (478)
T KOG1129|consen 365 GLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH-G-------------- 429 (478)
T ss_pred HHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch-H--------------
Confidence 8899999999999999998876544444 4567788888888999999999999888764322 1
Q ss_pred ccchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036107 332 RFLIYNTMISSACVRSEEGNALKLRQKIEE 361 (441)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 361 (441)
..+|.+--.-.+.|++++|..+++....
T Consensus 430 --ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 430 --EALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred --HHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 2388888888899999999999988764
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.64 E-value=3.7e-05 Score=74.83 Aligned_cols=261 Identities=12% Similarity=0.108 Sum_probs=180.0
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHH
Q 036107 137 VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD 216 (441)
Q Consensus 137 i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 216 (441)
...+...|++++|++.++.-.. ..++ ...........+.+.|+.++|..+|..+-+..+.|..-|.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~---~I~D-----------k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~ 76 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK---QILD-----------KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYR 76 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh---hCCC-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 3456888999999999987554 2221 3456677788889999999999999999655566666666
Q ss_pred HHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107 217 VLIHGWCKT-----RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF-RKVDYTLKEMQEKGCKPSVITCTIVMH 290 (441)
Q Consensus 217 ~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~l~~~m~~~g~~p~~~~~~~ll~ 290 (441)
.+..+..-. .+.+...++|+++...- |.....-.+.-.+.....+ ..+...+..+...|++ .+|+.|-.
T Consensus 77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~ 151 (517)
T PF12569_consen 77 GLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKP 151 (517)
T ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHH
Confidence 777766333 25788889999987642 4444443333333332333 3456667777888886 45677766
Q ss_pred HHHhcCCHHHHHHHHHHHhhC----CC----------CCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHH
Q 036107 291 ALEKAKQIYEALKVYEKMKSD----DC----------LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356 (441)
Q Consensus 291 ~~~~~~~~~~a~~~~~~m~~~----g~----------~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~ 356 (441)
-|......+-..+++...... +- .|+... .++.-+-..|-..|++++|++..
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~l--------------w~~~~lAqhyd~~g~~~~Al~~I 217 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLL--------------WTLYFLAQHYDYLGDYEKALEYI 217 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHH--------------HHHHHHHHHHHHhCCHHHHHHHH
Confidence 676655666666666665432 11 222222 23566778888999999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107 357 QKIEEDSCKPD-CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA 435 (441)
Q Consensus 357 ~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 435 (441)
++.++. .|+ ...|..-.+.+-+.|++.+|.+..+..+.| + .-|...-+.....+.++|+.++|++++....+.
T Consensus 218 d~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L---D-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 218 DKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL---D-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC---C-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 998876 566 446777777888999999997754444442 2 236667777788889999999999999887765
Q ss_pred h
Q 036107 436 T 436 (441)
Q Consensus 436 ~ 436 (441)
.
T Consensus 292 ~ 292 (517)
T PF12569_consen 292 D 292 (517)
T ss_pred C
Confidence 4
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.57 E-value=0.00017 Score=65.94 Aligned_cols=229 Identities=10% Similarity=-0.019 Sum_probs=150.7
Q ss_pred CChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHH
Q 036107 144 KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWC 223 (441)
Q Consensus 144 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 223 (441)
++.+.++.-+.++....+..+.. ....|..+-..+.+.|+.++|...|++.-...+.+...|+.+-..+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~----------~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~ 109 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEE----------RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT 109 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHh----------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45667777777776533221110 24556777778889999999999998886555667888999999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036107 224 KTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302 (441)
Q Consensus 224 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 302 (441)
..|++++|...|++..+. .|+ ..+|..+..++...|++++|.+.|+...+.. |+..........+...+++++|.
T Consensus 110 ~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~ 185 (296)
T PRK11189 110 QAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAK 185 (296)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHH
Confidence 999999999999999874 454 5678888888899999999999999987753 33221222222344567899999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC---C--CC-CHHHHHHHHH
Q 036107 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS---C--KP-DCETHARSLK 376 (441)
Q Consensus 303 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~--~p-~~~t~~~li~ 376 (441)
..|.+..... .|+. |.. ...+...|+...+ +.+..+.+.. . .| ....|..+-.
T Consensus 186 ~~l~~~~~~~-~~~~------------------~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~ 244 (296)
T PRK11189 186 ENLKQRYEKL-DKEQ------------------WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAK 244 (296)
T ss_pred HHHHHHHhhC-Cccc------------------cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 9997755432 2322 221 1222334555544 3555554221 1 11 2357888888
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036107 377 MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411 (441)
Q Consensus 377 ~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ 411 (441)
.+.+.|++++|... +++..+.+ .||-.-+..
T Consensus 245 ~~~~~g~~~~A~~~---~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 245 YYLSLGDLDEAAAL---FKLALANN-VYNFVEHRY 275 (296)
T ss_pred HHHHCCCHHHHHHH---HHHHHHhC-CchHHHHHH
Confidence 99999999999774 44443322 345554444
No 68
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.52 E-value=1.1e-05 Score=72.97 Aligned_cols=232 Identities=13% Similarity=0.057 Sum_probs=151.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHH-H
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI-E 255 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li-~ 255 (441)
+......+.+++.-.|+.+.+ ..++..+-.|.......+...+...++-+.+..-+++....+..++-.++..+. .
T Consensus 34 ~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 34 KLERDFYQYRSYIALGQYDSV---LSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHHTT-HHHH---HHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHH---HHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 345566677888888987754 455544446777666555554444355566666666655444332222333222 3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccch
Q 036107 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335 (441)
Q Consensus 256 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (441)
.+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+.+ .|... ..+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l-~qL------------ 169 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSIL-TQL------------ 169 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHH-HHH------------
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHH-HHH------------
Confidence 455679999999998653 366777888999999999999999999999764 34332 222
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036107 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415 (441)
Q Consensus 336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~ 415 (441)
..+.+..+...+++++|..+|+++.+ ...++..+.+.+..++...|++++|.+ .+.+....+ .-+..+...++-.
T Consensus 170 a~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~---~L~~al~~~-~~~~d~LaNliv~ 244 (290)
T PF04733_consen 170 AEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEE---LLEEALEKD-PNDPDTLANLIVC 244 (290)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHH---HHHHHCCC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHH---HHHHHHHhc-cCCHHHHHHHHHH
Confidence 33344444445679999999999865 357888999999999999999999987 455533322 2245566777777
Q ss_pred HHhcCCc-cHHHHHHHHHHHHhh
Q 036107 416 LEKKSLG-NAKERIDELLTHATE 437 (441)
Q Consensus 416 ~~~~g~~-~~a~~~~~~m~~~~~ 437 (441)
....|+. +.+.+.++.++....
T Consensus 245 ~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 245 SLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHhCCChhHHHHHHHHHHHhCC
Confidence 7778877 668888888876643
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.50 E-value=0.00026 Score=59.64 Aligned_cols=170 Identities=9% Similarity=-0.044 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc
Q 036107 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211 (441)
Q Consensus 132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 211 (441)
..--+--+|.+.|+...|..-+++..+.++. +.-++..+-..|-+.|..+.|.+-|++.-+--+-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs--------------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~ 102 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS--------------YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN 102 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--------------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc
Confidence 3444555666777777777777776665532 44566666666667777777777666654433445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290 (441)
Q Consensus 212 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 290 (441)
..+.|..-..+|..|.+++|.+.|++....-.-| -..||..+.-+..+.|+++.|...|++-.+..-. ...+.-.+..
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~ 181 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELAR 181 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHH
Confidence 5556666666666677777777776666531111 1245666666666666666666666666554221 2344455555
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 036107 291 ALEKAKQIYEALKVYEKMKSDDCLTDT 317 (441)
Q Consensus 291 ~~~~~~~~~~a~~~~~~m~~~g~~~~~ 317 (441)
...+.|++..|...++.....+. ++.
T Consensus 182 ~~~~~~~y~~Ar~~~~~~~~~~~-~~A 207 (250)
T COG3063 182 LHYKAGDYAPARLYLERYQQRGG-AQA 207 (250)
T ss_pred HHHhcccchHHHHHHHHHHhccc-ccH
Confidence 56666666666666666655543 444
No 70
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=0.001 Score=61.88 Aligned_cols=188 Identities=11% Similarity=0.027 Sum_probs=117.5
Q ss_pred cCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHH
Q 036107 101 RYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRA 180 (441)
Q Consensus 101 ~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 180 (441)
.-...+++..|.++|+.... +-..+...|-.-+..-.++.++..|..+++.....-|.+ |. -
T Consensus 82 wEesq~e~~RARSv~ERALd----vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV-------------dq-l 143 (677)
T KOG1915|consen 82 WEESQKEIQRARSVFERALD----VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV-------------DQ-L 143 (677)
T ss_pred HHHhHHHHHHHHHHHHHHHh----cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH-------------HH-H
Confidence 34556777788888753322 223456677777777788888888888888876633111 21 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 036107 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260 (441)
Q Consensus 181 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 260 (441)
|--.+.+=-..|++..|.++|++..+ ..|+...|++.|+.=.+-+.++.|..+|+...-. .|++.+|--...-=-++
T Consensus 144 WyKY~ymEE~LgNi~gaRqiferW~~-w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 144 WYKYIYMEEMLGNIAGARQIFERWME-WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKH 220 (677)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhc
Confidence 22333344456888888888876532 4688888888888888888888888888887753 47888887777777777
Q ss_pred CCHHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 261 KDFRKVDYTLKEMQEK-GC-KPSVITCTIVMHALEKAKQIYEALKVYEKMK 309 (441)
Q Consensus 261 g~~~~a~~l~~~m~~~-g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 309 (441)
|....|..+|....+. |- ..+...|++...-=.++..++.|.-+|+-..
T Consensus 221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl 271 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYAL 271 (677)
T ss_pred CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777777766543 11 1122233333332233444555555554443
No 71
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.48 E-value=5.1e-06 Score=75.13 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWC----KTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 252 (441)
+.+.....+..+.+.++++.|.+.++.|++- ..|. +...+..++. ....+.+|..+|+++.+. ..+++.+.+.
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng 206 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQI-DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNG 206 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHH
Confidence 3344444455555555555555555554321 1121 1222222221 122455555555554432 3344455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhh
Q 036107 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI-YEALKVYEKMKS 310 (441)
Q Consensus 253 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~ 310 (441)
+..++...|++++|.+++.+..+... -+..|...++.+....|+. +.+.+++.+++.
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 55555555555555555555433321 1344444455555555554 344455555544
No 72
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.48 E-value=0.00099 Score=64.31 Aligned_cols=333 Identities=10% Similarity=0.026 Sum_probs=187.0
Q ss_pred CCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHH
Q 036107 55 DEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYN 134 (441)
Q Consensus 55 ~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~ 134 (441)
-..|+...-+.|...+.++-++.|+.+.++.-.... .+.......--..|..++-..+|. ......+.....|-
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~--slWlra~~~ek~hgt~Esl~Allq----kav~~~pkae~lwl 588 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKK--SLWLRAAMFEKSHGTRESLEALLQ----KAVEQCPKAEILWL 588 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchh--HHHHHHHHHHHhcCcHHHHHHHHH----HHHHhCCcchhHHH
Confidence 345667777777777777778888877776432222 233333322222333333333332 11112223445666
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHH
Q 036107 135 AMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214 (441)
Q Consensus 135 ~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 214 (441)
....-+-..|+...|+.++.+.-+..+. +...|-+-+..-.....++.|..+|.+.+. ..|+..+
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~pn--------------seeiwlaavKle~en~e~eraR~llakar~-~sgTeRv 653 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANPN--------------SEEIWLAAVKLEFENDELERARDLLAKARS-ISGTERV 653 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCC--------------cHHHHHHHHHHhhccccHHHHHHHHHHHhc-cCCcchh
Confidence 6666677778888888777776664311 556677777777777788888888777643 3566667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV-SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293 (441)
Q Consensus 215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 293 (441)
|.--++.---.++.++|.+++++..+. -|+-. .|-.+-..+-+.++.+.|.+.|..=.+. ++-....|-.|...=-
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEE 730 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHH
Confidence 766666666667778888877777653 34443 3444444555666666666666543322 2223445555555556
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc-----------
Q 036107 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED----------- 362 (441)
Q Consensus 294 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------- 362 (441)
+.|.+-.|..+++...-++. -+... |-..|..-.+.|+.+.|..++.+..+.
T Consensus 731 k~~~~~rAR~ildrarlkNP-k~~~l----------------wle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEa 793 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNP-KNALL----------------WLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEA 793 (913)
T ss_pred HhcchhhHHHHHHHHHhcCC-Ccchh----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHH
Confidence 66777777777777666542 23334 444444444455545444444333221
Q ss_pred ------------------CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcc
Q 036107 363 ------------------SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEELEKKSLGN 423 (441)
Q Consensus 363 ------------------g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~ 423 (441)
...-|......+-..+-....++.|++ .|.+... +-|| -.+|..+...+.+.|.-+
T Consensus 794 I~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~---Wf~Ravk--~d~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKARE---WFERAVK--KDPDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHH---HHHHHHc--cCCccchHHHHHHHHHHHhCCHH
Confidence 112233333333344444444555544 5555332 2333 347777777778888777
Q ss_pred HHHHHHHHHH
Q 036107 424 AKERIDELLT 433 (441)
Q Consensus 424 ~a~~~~~~m~ 433 (441)
+-.++++.-.
T Consensus 869 d~kev~~~c~ 878 (913)
T KOG0495|consen 869 DQKEVLKKCE 878 (913)
T ss_pred HHHHHHHHHh
Confidence 7777776654
No 73
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.47 E-value=0.00057 Score=65.89 Aligned_cols=300 Identities=11% Similarity=0.034 Sum_probs=214.4
Q ss_pred hhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHH
Q 036107 70 LKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLM 149 (441)
Q Consensus 70 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a 149 (441)
|..++...++...+.+-... +.+.-+..+-+-..|++..|+..++..... ...+...|-.-+.....+.+++.|
T Consensus 564 gt~Esl~Allqkav~~~pka--e~lwlM~ake~w~agdv~~ar~il~~af~~----~pnseeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQCPKA--EILWLMYAKEKWKAGDVPAARVILDQAFEA----NPNSEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred CcHHHHHHHHHHHHHhCCcc--hhHHHHHHHHHHhcCCcHHHHHHHHHHHHh----CCCcHHHHHHHHHHhhccccHHHH
Confidence 44555555665555554333 345555666777789999999888644432 122567999999999999999999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHH
Q 036107 150 WELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSD 229 (441)
Q Consensus 150 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 229 (441)
..+|.+....+ ++..+|.--++.---.++.++|.++.++.-+.++-=...|-.+-..+-+.++++
T Consensus 638 R~llakar~~s---------------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 638 RDLLAKARSIS---------------GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHHHHHHhccC---------------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHH
Confidence 99999988744 255666666666667799999999998775544444556777778888889999
Q ss_pred HHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107 230 YAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308 (441)
Q Consensus 230 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 308 (441)
.|.+.|..=.+. .|+ +..|-.+-.-=-+.|.+-+|..+++.-+-.+.+ |...|-..|+.=.+.|+.+.|..+..+.
T Consensus 703 ~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 703 MAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988776543 344 456666666667788999999999998877654 7889999999999999999999888776
Q ss_pred hhCCCCCCHHHHHHH-------------HHHHHhcCcc-chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHH
Q 036107 309 KSDDCLTDTSFYSSL-------------IFILSKAVRF-LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC-ETHAR 373 (441)
Q Consensus 309 ~~~g~~~~~~~~~~l-------------i~~~~~~g~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ 373 (441)
.+. ++.+...|..- ++++-|+..- ...-++-..+-...++++|.+.|.+.... .||. .+|.-
T Consensus 780 LQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~ 856 (913)
T KOG0495|consen 780 LQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAW 856 (913)
T ss_pred HHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHH
Confidence 553 22233344333 4555554333 44555666677778899999999988754 4544 46777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHH
Q 036107 374 SLKMCCHKKRMKDGMLVLNLMRE 396 (441)
Q Consensus 374 li~~~~~~g~~~~a~~~~~~~~~ 396 (441)
+...+.+.|.-++-.+++..+..
T Consensus 857 fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 857 FYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhc
Confidence 77888899987777776665544
No 74
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.00081 Score=62.69 Aligned_cols=221 Identities=12% Similarity=0.061 Sum_probs=143.1
Q ss_pred cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036107 191 RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270 (441)
Q Consensus 191 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~ 270 (441)
.|+.-.|.+-|+..-...+.+...|=-+-..|....+.++..+.|++....+- -|..+|..--....-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46666666666665332222222255555667778888888888887776432 24556666666666667788888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChh
Q 036107 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEG 350 (441)
Q Consensus 271 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~ 350 (441)
++.++.... ++..|.-+--+..+.+++++++..|++.+++ .|+.. ..||..-..+...++++
T Consensus 418 ~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~---------------Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 418 QKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCP---------------EVYNLFAEILTDQQQFD 479 (606)
T ss_pred HHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCc---------------hHHHHHHHHHhhHHhHH
Confidence 887665322 5666777777777888899999999888875 23222 34888888888889999
Q ss_pred HHHHHHHHHHHc-----CCCCCHHHH--HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCc
Q 036107 351 NALKLRQKIEED-----SCKPDCETH--ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEELEKKSLG 422 (441)
Q Consensus 351 ~a~~~~~~m~~~-----g~~p~~~t~--~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~ 422 (441)
+|++.|+..++. ++..+..++ -.++- +.=.+++..|.+ ++++..+ +-|- ...|..|-..-.+.|+.
T Consensus 480 ~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~---Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 480 KAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAEN---LLRKAIE--LDPKCEQAYETLAQFELQRGKI 553 (606)
T ss_pred HHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHH---HHHHHHc--cCchHHHHHHHHHHHHHHHhhH
Confidence 999999987643 222222222 11111 112266777755 6666433 3332 23788899999999999
Q ss_pred cHHHHHHHHHHHHh
Q 036107 423 NAKERIDELLTHAT 436 (441)
Q Consensus 423 ~~a~~~~~~m~~~~ 436 (441)
++|.++|+.--...
T Consensus 554 ~eAielFEksa~lA 567 (606)
T KOG0547|consen 554 DEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998755443
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.44 E-value=0.00046 Score=58.13 Aligned_cols=188 Identities=11% Similarity=-0.001 Sum_probs=119.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 036107 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262 (441)
Q Consensus 183 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 262 (441)
-|--.|.+.|+...|..-+++.-+.-+-+..+|..+-..|-+.|..+.|.+-|++..+.. +-+..+.|..-.-+|..|+
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 344567777777777777777644445566667777777777777777777777776532 1234556666666677777
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHH
Q 036107 263 FRKVDYTLKEMQEKG-CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMIS 341 (441)
Q Consensus 263 ~~~a~~l~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~ 341 (441)
+++|...|++....- ..--..||..+.-+..+.|+++.|+..|++-.+..-..+. +.-.+..
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~-----------------~~l~~a~ 181 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP-----------------ALLELAR 181 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh-----------------HHHHHHH
Confidence 777777777766541 1112456677776777777777777777777664322111 2455556
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 036107 342 SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389 (441)
Q Consensus 342 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 389 (441)
...+.|++-.|...++.....+. ++..+....|+---..|+.+.+.+
T Consensus 182 ~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 182 LHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred HHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHH
Confidence 66666777777777776665554 666666666666666677666655
No 76
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.43 E-value=4.2e-07 Score=53.51 Aligned_cols=34 Identities=32% Similarity=0.541 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 036107 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368 (441)
Q Consensus 335 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 368 (441)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6999999999999999999999999999999983
No 77
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=0.00047 Score=65.31 Aligned_cols=268 Identities=13% Similarity=0.073 Sum_probs=179.8
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036107 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF 204 (441)
Q Consensus 125 g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 204 (441)
+.+.++...-.--.-+-..+++.+..++++...+..+- ....+..=|..+...|+..+...+=..+
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf--------------h~~~~~~~ia~l~el~~~n~Lf~lsh~L 304 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPF--------------HLPCLPLHIACLYELGKSNKLFLLSHKL 304 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC--------------CcchHHHHHHHHHHhcccchHHHHHHHH
Confidence 34445555666666677788999999999998886522 4556666677888888888887777778
Q ss_pred hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--C-CCC
Q 036107 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEK--G-CKP 280 (441)
Q Consensus 205 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g-~~p 280 (441)
-+..+-...+|-++-.-|.-.|+..+|.+.|.+-.. +.|. ...|-..-..|+-.|+.|+|...+...-+. | ..|
T Consensus 305 V~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP 382 (611)
T KOG1173|consen 305 VDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP 382 (611)
T ss_pred HHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch
Confidence 777777888888888888888999999999987654 3333 356777777788888888887777665432 2 122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-------------HHHHhcC----c-------c-ch
Q 036107 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI-------------FILSKAV----R-------F-LI 335 (441)
Q Consensus 281 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li-------------~~~~~~g----~-------~-~~ 335 (441)
.. |.. --|.+.+++..|.++|.+..... +.|..+.+-+- .-+.+.- . + .+
T Consensus 383 ~L--Ylg--mey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~ 457 (611)
T KOG1173|consen 383 SL--YLG--MEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPT 457 (611)
T ss_pred HH--HHH--HHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHH
Confidence 21 211 12455556666666665544321 11111111110 0000000 0 0 45
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036107 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415 (441)
Q Consensus 336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~ 415 (441)
++.|-..|.+.+..++|+..+++-.... .-|..|+.++--.|...|+++.|.+ .+.+ ...+.|+-.+...++..
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid---~fhK--aL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAID---HFHK--ALALKPDNIFISELLKL 531 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHH---HHHH--HHhcCCccHHHHHHHHH
Confidence 8888899999999999999999877543 5577788888888889999999965 6666 45788998888877776
Q ss_pred HHhc
Q 036107 416 LEKK 419 (441)
Q Consensus 416 ~~~~ 419 (441)
+...
T Consensus 532 aie~ 535 (611)
T KOG1173|consen 532 AIED 535 (611)
T ss_pred HHHh
Confidence 6543
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.38 E-value=0.0024 Score=61.70 Aligned_cols=380 Identities=12% Similarity=0.013 Sum_probs=211.1
Q ss_pred hcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHH
Q 036107 29 LCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKV 108 (441)
Q Consensus 29 l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 108 (441)
||..|+.. +|.+..+.-.+.... ...+|..+--.....++.++|...+..+.+.+ +|...+..=+.-.-++-++.
T Consensus 51 L~~lg~~~-ea~~~vr~glr~d~~--S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 51 LNCLGKKE-EAYELVRLGLRNDLK--SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred hhcccchH-HHHHHHHHHhccCcc--cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhh
Confidence 67777776 666666522222211 33455544333334466777777777766654 33333333332222333333
Q ss_pred HHHHhhhhhHhhhhcCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHH
Q 036107 109 VEALKCFCFTWAKTQTGYMH-TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT 187 (441)
Q Consensus 109 ~~A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 187 (441)
.-....-...+. ..| ....|-...-+..-.|+...|.+++++..+..+..++...+... ...---...
T Consensus 126 ~~~~~tr~~LLq-----l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~s------e~~Ly~n~i 194 (700)
T KOG1156|consen 126 EGYLETRNQLLQ-----LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHS------ELLLYQNQI 194 (700)
T ss_pred hhHHHHHHHHHH-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHH------HHHHHHHHH
Confidence 332222111111 112 35688888888899999999999999998865323322222111 111112233
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH-hcCCHHHH
Q 036107 188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC-REKDFRKV 266 (441)
Q Consensus 188 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a 266 (441)
..+.|..+.|++.....+..+.-....--+--..+.+.+++++|..++..+... .||-.-|.-.+..+. +-.+--++
T Consensus 195 ~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~ 272 (700)
T KOG1156|consen 195 LIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEA 272 (700)
T ss_pred HHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHH
Confidence 456788888888877665433333333344456678889999999999999886 377776665555444 33333333
Q ss_pred -HHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH-------------HHHHHHh
Q 036107 267 -DYTLKEMQEKG---CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS-------------LIFILSK 329 (441)
Q Consensus 267 -~~l~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~-------------li~~~~~ 329 (441)
..+|....+.- -.|--...+.+ + ...-.+....++..+.+.|+++--....+ ++..|..
T Consensus 273 lk~ly~~ls~~y~r~e~p~Rlplsvl-~---~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~ 348 (700)
T KOG1156|consen 273 LKALYAILSEKYPRHECPRRLPLSVL-N---GEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQH 348 (700)
T ss_pred HHHHHHHHhhcCcccccchhccHHHh-C---cchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHh
Confidence 36666665431 11111111111 1 11222333444455555555432221111 1122211
Q ss_pred c----Ccc---------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhhHHH
Q 036107 330 A----VRF---------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE-THARSLKMCCHKKRMKDGML 389 (441)
Q Consensus 330 ~----g~~---------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~ 389 (441)
. |.. .++-.++..|-+.|+++.|+..++....+ .|+.+ -|..=.+.+...|++++|..
T Consensus 349 ~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~ 426 (700)
T KOG1156|consen 349 SLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAA 426 (700)
T ss_pred hcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHH
Confidence 1 111 55666788889999999999999988754 66654 34444467778899999876
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107 390 VLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436 (441)
Q Consensus 390 ~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 436 (441)
.++..++| + .||...-..-..-..++++.++|.++....++..
T Consensus 427 ~l~ea~el---D-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 427 WLDEAQEL---D-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHhc---c-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 44433332 2 3555544455666778899999998888776644
No 79
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.38 E-value=6.9e-07 Score=52.53 Aligned_cols=33 Identities=27% Similarity=0.564 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 036107 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281 (441)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 281 (441)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 444455555555555555555555544444444
No 80
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=5.8e-05 Score=70.01 Aligned_cols=195 Identities=15% Similarity=0.098 Sum_probs=148.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcH
Q 036107 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS 212 (441)
Q Consensus 133 y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 212 (441)
|-.+-..|.+..+.++.+..|++....++. ++.+|..--..+.-.+++++|..=|++..+--+-+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~--------------n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~ 428 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPE--------------NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA 428 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCC--------------CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh
Confidence 777778899999999999999999887644 445666656666667889999998888765445566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHH--
Q 036107 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK-----GCKPSVITC-- 285 (441)
Q Consensus 213 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g~~p~~~~~-- 285 (441)
..|--+-.+.-+.+++++++..|++..++ ++.-+..|+..-..+...+++++|.+.|+...+. ++..+..++
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 66666777777889999999999999875 6556789999999999999999999999987653 232233222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHH
Q 036107 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360 (441)
Q Consensus 286 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 360 (441)
-+++..- -.+++..|.+++....+.+-+.+. .|-+|-..-.+.|++++|+++|++-.
T Consensus 508 Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~-----------------A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 508 KALLVLQ-WKEDINQAENLLRKAIELDPKCEQ-----------------AYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhHhhhc-hhhhHHHHHHHHHHHHccCchHHH-----------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2333222 238999999999998886543332 38888888899999999999998864
No 81
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.32 E-value=1e-06 Score=51.45 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 036107 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGC 278 (441)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 278 (441)
|+++|.+|++.|+++.|.++|++|++.|+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33333333333333333333333333333
No 82
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.32 E-value=8.8e-07 Score=51.73 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 036107 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245 (441)
Q Consensus 213 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 245 (441)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999999887
No 83
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.27 E-value=0.00018 Score=63.57 Aligned_cols=170 Identities=10% Similarity=-0.012 Sum_probs=118.0
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 208 (441)
....+-.+...+.+.|+++.|...|+++....+..+. ...++..+..++.+.|++++|...++.+.+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY-----------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH 100 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 4566777777888889999999999888774422110 22456667778888899999999998874322
Q ss_pred CCcH---HHHHHHHHHHHhc--------CCHHHHHHHHHHHhhCCCCCCHh-hH-----------------HHHHHHHHh
Q 036107 209 SLSS---QIFDVLIHGWCKT--------RKSDYAQKAMKEMFQHGFSPDGV-SY-----------------TCFIEHYCR 259 (441)
Q Consensus 209 ~~~~---~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~-----------------~~li~~~~~ 259 (441)
+.+. .++..+-.++.+. |+.++|.+.|+...... |+.. .+ -.+-..+.+
T Consensus 101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 178 (235)
T TIGR03302 101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK 178 (235)
T ss_pred cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2122 1344444444443 67888888888887642 3321 11 133456778
Q ss_pred cCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 260 EKDFRKVDYTLKEMQEKG--CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
.|++++|...+++..+.. -+.....+..+..++.+.|++++|..+++.+...
T Consensus 179 ~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 179 RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 899999999999987753 2234678889999999999999999999888764
No 84
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.001 Score=67.17 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 256 (441)
.+.+|+.+-.+-.+.|.+.+|.+-|-+.. |...|.-+|+...+.|.+++-.+.+.-.++..-+|.+. +.||-+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikad-----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKAD-----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcC-----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 45666666666666666666666554432 33346666666666666666666665555544444433 356666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchH
Q 036107 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~ 336 (441)
|++.++..+.++++. -||......+-+-|...+.++.|.-+|..... |
T Consensus 1176 yAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN-------------------------~ 1223 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN-------------------------F 1223 (1666)
T ss_pred HHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh-------------------------H
Confidence 666666555444432 25555555666666666666666655554322 5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383 (441)
Q Consensus 337 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 383 (441)
..+...++..|+++.|.+--++. -+..||-.+-.+|...+.
T Consensus 1224 a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1224 AKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhh
Confidence 55555555555555554433322 233455555555554443
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.00063 Score=59.42 Aligned_cols=291 Identities=10% Similarity=0.035 Sum_probs=176.0
Q ss_pred ChHHHHHHHhhhhhHhhhhcCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHH
Q 036107 104 SPDKVVEALKCFCFTWAKTQTGYMH-TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182 (441)
Q Consensus 104 ~~g~~~~A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (441)
+..++.+|++++....+ -.| +....+.+-.+|-...++..|-+.++++.... | ...-|.
T Consensus 22 ~d~ry~DaI~~l~s~~E-----r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P------------~~~qYr 81 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELE-----RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---P------------ELEQYR 81 (459)
T ss_pred HHhhHHHHHHHHHHHHh-----cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---h------------HHHHHH
Confidence 45567777777642222 123 56677888888888899999999999987743 2 112222
Q ss_pred H-HHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHH--HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 036107 183 V-LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGW--CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR 259 (441)
Q Consensus 183 ~-li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 259 (441)
. -..++-+.+.+..|+++...|.+. ++...-..-+.+. -..+++..+..+.++....| +..+.+..-....+
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence 1 124556778899999999888542 3322222223332 34678888999998886533 33344444344568
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-------------CCHHH----HH
Q 036107 260 EKDFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL-------------TDTSF----YS 321 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-------------~~~~~----~~ 321 (441)
.|++++|.+-|+...+- |.. ....|+..+..| +.|+++.|.+...+++++|++ ||... ..
T Consensus 157 egqyEaAvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~ 234 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV 234 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence 89999999999988765 555 457788777655 558999999999999888763 22111 11
Q ss_pred HHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC
Q 036107 322 SLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE-EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK 400 (441)
Q Consensus 322 ~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~ 400 (441)
.-++++. ..+|.-..-+.+.|+.+.|.+-+-.|- ...-..|++|...+.-.-. .+++.++.+-+..+-+ .
T Consensus 235 lh~Sal~-----eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~---~ 305 (459)
T KOG4340|consen 235 LHQSALV-----EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQ---Q 305 (459)
T ss_pred HHHHHHH-----HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHh---c
Confidence 1111111 226655666677888888888887774 2223455566554433222 1333333221222222 1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 036107 401 GIVPQESTHKMLAEELEKKSLGNAKERIDEL 431 (441)
Q Consensus 401 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 431 (441)
. +....||..++-.||+..-++.|-+++-+
T Consensus 306 n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 306 N-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred C-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 1 13455777777777777777777666543
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=0.0003 Score=66.75 Aligned_cols=255 Identities=9% Similarity=0.013 Sum_probs=184.3
Q ss_pred HHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHH
Q 036107 140 LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLI 219 (441)
Q Consensus 140 ~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 219 (441)
+.+.|++.+|.-+|+...+..|. +.+.|-.|-..-...++-..|+.-+.+.-+--+-|....-+|-
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~--------------haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLA 360 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ--------------HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALA 360 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH--------------HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 35677888888888887775432 6788888888888888888888888777554466777888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCC--------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHH
Q 036107 220 HGWCKTRKSDYAQKAMKEMFQHGFS--------PDGVSYTCFIEHYCREKDFRKVDYTLKEMQ-EKGCKPSVITCTIVMH 290 (441)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~l~~~m~-~~g~~p~~~~~~~ll~ 290 (441)
-.|...|.-..|++.++.-.....+ ++...-+. +.......+....++|-++. +.+.++|...+..|--
T Consensus 361 VSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 361 VSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV 438 (579)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence 8999999999999999888653210 01100000 22233334566777777764 4565677777888877
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-
Q 036107 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE- 369 (441)
Q Consensus 291 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~- 369 (441)
.|.-.|++++|.+.|+..... +|+..+ .||.|-..++...+.++|+.-|++.++. +|+.+
T Consensus 439 Ly~ls~efdraiDcf~~AL~v--~Pnd~~---------------lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR 499 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQV--KPNDYL---------------LWNRLGATLANGNRSEEAISAYNRALQL--QPGYVR 499 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhc--CCchHH---------------HHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeee
Confidence 888999999999999999885 666653 4999999999999999999999998864 67654
Q ss_pred -HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHhcCCccHHHHHHH
Q 036107 370 -THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV------PQESTHKMLAEELEKKSLGNAKERIDE 430 (441)
Q Consensus 370 -t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~------p~~~~~~~ll~~~~~~g~~~~a~~~~~ 430 (441)
-|| |--+|...|.+++|.+.+=..-.|..++-. ++...|.+|=.++.-.++.|.+.+...
T Consensus 500 ~RyN-lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 500 VRYN-LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred eehh-hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 354 555788999999998765555566655222 234578877777788888775555443
No 87
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.00082 Score=63.74 Aligned_cols=213 Identities=15% Similarity=0.060 Sum_probs=153.6
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh----
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF---- 204 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---- 204 (441)
.+.+|=++-.-|.-.|+..+|++.|.+....++.+ ...|-..-++++-.|..|+|...+...
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~f--------------gpaWl~fghsfa~e~EhdQAmaaY~tAarl~ 376 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTF--------------GPAWLAFGHSFAGEGEHDQAMAAYFTAARLM 376 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccc--------------cHHHHHHhHHhhhcchHHHHHHHHHHHHHhc
Confidence 35567666666666677777777777766544222 346777777888888888888877654
Q ss_pred hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C--
Q 036107 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK----G-- 277 (441)
Q Consensus 205 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g-- 277 (441)
+....|.. -+---|.+.++++.|.+.|.+... +.| |+...+-+--.....+.+.+|..+|+...+. +
T Consensus 377 ~G~hlP~L----Ylgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e 450 (611)
T KOG1173|consen 377 PGCHLPSL----YLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE 450 (611)
T ss_pred cCCcchHH----HHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc
Confidence 22333433 233457778899999999988765 445 5566777666667788999999999987621 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHH
Q 036107 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357 (441)
Q Consensus 278 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~ 357 (441)
...-..+++.|-++|.+.+.+++|...|+...... +-+..+ +.++--.|...|+++.|++.|.
T Consensus 451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~----------------~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDAST----------------HASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhH----------------HHHHHHHHHHhcChHHHHHHHH
Confidence 11245678999999999999999999999988753 224433 7777788888999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHh
Q 036107 358 KIEEDSCKPDCETHARSLKMCCH 380 (441)
Q Consensus 358 ~m~~~g~~p~~~t~~~li~~~~~ 380 (441)
+-. .+.||..+-..++..+..
T Consensus 514 KaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 514 KAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHH--hcCCccHHHHHHHHHHHH
Confidence 876 569999888888875543
No 88
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.14 E-value=6e-05 Score=70.91 Aligned_cols=124 Identities=13% Similarity=0.059 Sum_probs=77.7
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 036107 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH--GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284 (441)
Q Consensus 207 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~ 284 (441)
+.+.+......+++.+....+++.+..++.+.+.. ....-..|..++|+.|.+.|..++++++++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44555666666666666666666666666666543 2222234445666667777666777666666666666677777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 036107 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330 (441)
Q Consensus 285 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (441)
||.||+.+.+.|++..|.++..+|...+...+..|+.-.+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777666666666655555555655555555555
No 89
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.0055 Score=55.01 Aligned_cols=184 Identities=12% Similarity=0.089 Sum_probs=114.8
Q ss_pred hhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHc
Q 036107 63 LASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGK 142 (441)
Q Consensus 63 l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~ 142 (441)
|.-....++...|..++.+-...+..... .+.-.+..++-..|+.++|+.++.+... .-.|+...+-.+-....-
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~-~~~lWia~C~fhLgdY~~Al~~Y~~~~~----~~~~~~el~vnLAcc~Fy 103 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEED-SLQLWIAHCYFHLGDYEEALNVYTFLMN----KDDAPAELGVNLACCKFY 103 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhH-HHHHHHHHHHHhhccHHHHHHHHHHHhc----cCCCCcccchhHHHHHHH
Confidence 66666778888888888887766655553 5666788899999999999999965433 333566666666666666
Q ss_pred CCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHH
Q 036107 143 SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGW 222 (441)
Q Consensus 143 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 222 (441)
.|.+.+|..+-++..+ ++-.-..+++...+.|+-++-..+.+.+.+.. .---+|....
T Consensus 104 Lg~Y~eA~~~~~ka~k------------------~pL~~RLlfhlahklndEk~~~~fh~~LqD~~----EdqLSLAsvh 161 (557)
T KOG3785|consen 104 LGQYIEAKSIAEKAPK------------------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL----EDQLSLASVH 161 (557)
T ss_pred HHHHHHHHHHHhhCCC------------------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH----HHHHhHHHHH
Confidence 7888888887665433 44455556666667777777766666664311 1112222222
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH-HHHhcCCHHHHHHHHHHHHH
Q 036107 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE-HYCREKDFRKVDYTLKEMQE 275 (441)
Q Consensus 223 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~a~~l~~~m~~ 275 (441)
--.-.+.+|.++|.+.... .|+....|.-+. +|.+..-++-+.++++--.+
T Consensus 162 YmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 162 YMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 2233567777777777654 245555554443 34455555666666655433
No 90
>PLN02789 farnesyltranstransferase
Probab=98.14 E-value=0.0064 Score=55.91 Aligned_cols=215 Identities=6% Similarity=-0.026 Sum_probs=145.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCC
Q 036107 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN-SVAHAYKVFLKFKDCISL 210 (441)
Q Consensus 132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~ 210 (441)
+++.+-..+...++.++|+.+.+++.+..+. +..+|+.--..+...| ++++++..++.+-...+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~--------------~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk 104 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPG--------------NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK 104 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch--------------hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc
Confidence 4555556667778999999999998885533 3445555445555666 679999999988655566
Q ss_pred cHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107 211 SSQIFDVLIHGWCKTRK--SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288 (441)
Q Consensus 211 ~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 288 (441)
+..+|+..--.+.+.|. .++++.+++++.+... -|..+|+...-++.+.|+++++++.++++.+.+.. |...|+..
T Consensus 105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R 182 (320)
T PLN02789 105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQR 182 (320)
T ss_pred chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHH
Confidence 77778766555556665 3678889988887542 47789999888999999999999999999988765 66777776
Q ss_pred HHHHHhc---CCH----HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhc----CChhHHHHHHH
Q 036107 289 MHALEKA---KQI----YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR----SEEGNALKLRQ 357 (441)
Q Consensus 289 l~~~~~~---~~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~----g~~~~a~~~~~ 357 (441)
...+.+. |.. ++..+....+.... +-|... |+-+...+... ++..+|.+.+.
T Consensus 183 ~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~Sa----------------W~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 183 YFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESP----------------WRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred HHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCH----------------HHHHHHHHhcCCcccccchhHHHHHH
Confidence 6655554 222 35566665665542 223333 55555555442 33456777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHh
Q 036107 358 KIEEDSCKPDCETHARSLKMCCH 380 (441)
Q Consensus 358 ~m~~~g~~p~~~t~~~li~~~~~ 380 (441)
+....+ ..+......|++.|+.
T Consensus 246 ~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 246 EVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred Hhhccc-CCcHHHHHHHHHHHHh
Confidence 765432 3355667777887775
No 91
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.13 E-value=4e-05 Score=56.77 Aligned_cols=75 Identities=19% Similarity=0.330 Sum_probs=35.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 036107 253 FIEHYCREKDFRKVDYTLKEMQEKGC-KPSVITCTIVMHALEKAK--------QIYEALKVYEKMKSDDCLTDTSFYSSL 323 (441)
Q Consensus 253 li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (441)
.|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 33334444555555555555555554 445555555554444322 122344455555555555555554444
Q ss_pred HHHH
Q 036107 324 IFIL 327 (441)
Q Consensus 324 i~~~ 327 (441)
+..+
T Consensus 111 l~~L 114 (120)
T PF08579_consen 111 LGSL 114 (120)
T ss_pred HHHH
Confidence 4443
No 92
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.13 E-value=0.0012 Score=68.94 Aligned_cols=229 Identities=11% Similarity=0.015 Sum_probs=154.3
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 208 (441)
+...|-.-|.-..+.++.+.|++++++....-+..... --...|.++++.-...|.-+...++|++..+-+
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee---------EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc 1527 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE---------EKLNIWIAYLNLENAYGTEESLKKVFERACQYC 1527 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH---------HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc
Confidence 35678888888888888888888888876632111100 023566677777777788888888888875533
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHH
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP-SVITCTI 287 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~ 287 (441)
.| ..+|..|...|.+.+..++|-++|+.|.+. +.-....|...+..+.++.+-++|..++.+..+.=.+- ......-
T Consensus 1528 d~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1528 DA-YTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred ch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 22 235778888888888888888888888865 33466778888888888888888888888766542111 1222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036107 288 VMHALEKAKQIYEALKVYEKMKSDDC-LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366 (441)
Q Consensus 288 ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 366 (441)
....-.+.|+.+.++.+|+....... +.| .|+..|..-.++|+.+.+..+|++..+.++.|
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRtD------------------lW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRTD------------------LWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCccchh------------------HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 34444677888888888887766432 222 28888888888888888888888888887776
Q ss_pred CHH--HHHHHHHHHHhcCChhh
Q 036107 367 DCE--THARSLKMCCHKKRMKD 386 (441)
Q Consensus 367 ~~~--t~~~li~~~~~~g~~~~ 386 (441)
-.. .|.-.+..=-+.|+-+.
T Consensus 1668 kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1668 KKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hHhHHHHHHHHHHHHhcCchhh
Confidence 543 44445544444454433
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.11 E-value=0.0063 Score=65.19 Aligned_cols=280 Identities=8% Similarity=-0.045 Sum_probs=169.5
Q ss_pred HHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---C-CCC--c
Q 036107 138 EALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---C-ISL--S 211 (441)
Q Consensus 138 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~-~~~--~ 211 (441)
..+...|++++|...+++.....+... . .. -....+.+-..+...|++++|...+.+... . ..+ .
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~-~--~~------~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~ 530 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTW-Y--YS------RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA 530 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCcc-H--HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence 345578999999999988765321110 0 00 113445566677889999999999987622 1 111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC--
Q 036107 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQ----HGFS--P-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK--GCKP-- 280 (441)
Q Consensus 212 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~--p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p-- 280 (441)
..++..+-..+...|+++.|...+++... .|.. + ....+..+-..+...|++++|...+++.... ...+
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 23455566678889999999998887654 2221 1 2233445555677789999999999887543 1112
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHH
Q 036107 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD-TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359 (441)
Q Consensus 281 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m 359 (441)
....+..+.......|++++|.+.+.......-... ...+.. ..-...+..+...|+.+.|...+...
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~A~~~l~~~ 679 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA-----------NADKVRLIYWQMTGDKEAAANWLRQA 679 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh-----------HHHHHHHHHHHHCCCHHHHHHHHHhc
Confidence 234455566678889999999999988754211100 000000 00111224455678888888887775
Q ss_pred HHcCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 036107 360 EEDSCKPDC---ETHARSLKMCCHKKRMKDGMLVLNLMREMLS-KGIVPQ-ESTHKMLAEELEKKSLGNAKERIDELLTH 434 (441)
Q Consensus 360 ~~~g~~p~~---~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~-~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 434 (441)
......... ..+..+..++...|+.++|...++......+ .|..++ ..+...+-.++.+.|+.++|.+.+.....
T Consensus 680 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 680 PKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred CCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 432211111 1134556677788999888776554443322 244433 23566677778899999999888887665
Q ss_pred Hhh
Q 036107 435 ATE 437 (441)
Q Consensus 435 ~~~ 437 (441)
..+
T Consensus 760 la~ 762 (903)
T PRK04841 760 LAN 762 (903)
T ss_pred HhC
Confidence 443
No 94
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.11 E-value=0.0038 Score=65.38 Aligned_cols=234 Identities=10% Similarity=0.025 Sum_probs=178.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL-----SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 251 (441)
....|-..|......++.+.|.+++++.-..+.+ -...|-++++.-.--|.-+...++|++..+. .-....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4577888888999999999999999987433322 2235888888777778889999999999874 22346788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 036107 252 CFIEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330 (441)
Q Consensus 252 ~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (441)
.|...|.+.+.+++|.++++.|.+. | -....|...+..+.+..+-++|..++.+..+. .|...+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv---------- 1600 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHV---------- 1600 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhH----------
Confidence 9999999999999999999999875 4 46788999999999999999999999988775 2321110
Q ss_pred CccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHH--H
Q 036107 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES--T 408 (441)
Q Consensus 331 g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~--~ 408 (441)
....-.+..-.+.|+.+.+-.+|+.....- .--...|+..|+.=.++|+.+.++. +|++....++.|-.. .
T Consensus 1601 ---~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~---lfeRvi~l~l~~kkmKff 1673 (1710)
T KOG1070|consen 1601 ---EFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRD---LFERVIELKLSIKKMKFF 1673 (1710)
T ss_pred ---HHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHH---HHHHHHhcCCChhHhHHH
Confidence 123444455567889999999999887542 1223459999999999999999877 777877788877543 7
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHH
Q 036107 409 HKMLAEELEKKSLGNAKERIDELLT 433 (441)
Q Consensus 409 ~~~ll~~~~~~g~~~~a~~~~~~m~ 433 (441)
|...+..=...|+-+.++.+=....
T Consensus 1674 fKkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1674 FKKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHH
Confidence 8888877777888877776655443
No 95
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.10 E-value=0.012 Score=57.12 Aligned_cols=253 Identities=9% Similarity=-0.017 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCcHHHHHHHHHH------HHhcCCHHHHHHHHHHHhhCCCCCCHhh
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDC--ISLSSQIFDVLIHG------WCKTRKSDYAQKAMKEMFQHGFSPDGVS 249 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~li~~------~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 249 (441)
...|..+..+.--.|+...|..+.+...+. -.|+...|...... ..+.|..+.|++-+.+-... + .|-..
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla 220 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLA 220 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHH
Confidence 345555556666667777777777766432 24555555544433 23455666666655443321 1 12222
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHH-HHHHHHhhC---CCCCC-------
Q 036107 250 -YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE-KAKQIYEAL-KVYEKMKSD---DCLTD------- 316 (441)
Q Consensus 250 -~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~-~~~~~m~~~---g~~~~------- 316 (441)
-.+--.-+.+.+++++|..++..+.... ||..-|.-.+..+. +..+..++. .+|....+. .-.|-
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl 298 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL 298 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh
Confidence 2233344566677777777777776652 55555554443333 333333333 555554332 11110
Q ss_pred -----HHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHH----cC----------CCCCHH--HHHHHH
Q 036107 317 -----TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE----DS----------CKPDCE--THARSL 375 (441)
Q Consensus 317 -----~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g----------~~p~~~--t~~~li 375 (441)
...+.-.+.-..+.|-+.++..+.+.|-.....+-..++.-.+.. .| -.|+.. |+--++
T Consensus 299 ~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~la 378 (700)
T KOG1156|consen 299 NGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLA 378 (700)
T ss_pred CcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHH
Confidence 011222233333334446677777666554433322222222221 11 145554 344566
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHhhhc
Q 036107 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQES-THKMLAEELEKKSLGNAKERIDELLTHATEQR 439 (441)
Q Consensus 376 ~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 439 (441)
..+-+.|+++.|.. +++. .-+..|+.. .|..=.+.+..+|++++|..++++-+..-.++
T Consensus 379 qh~D~~g~~~~A~~---yId~--AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 379 QHYDKLGDYEVALE---YIDL--AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred HHHHHcccHHHHHH---HHHH--HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence 67778899999977 4555 335677766 66666788999999999999999887665444
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.0035 Score=54.92 Aligned_cols=275 Identities=10% Similarity=0.087 Sum_probs=163.6
Q ss_pred cccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHH-
Q 036107 57 DFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNA- 135 (441)
Q Consensus 57 ~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~- 135 (441)
--+.+++....+-.++..+.++...-.+...... .-.+.|..+|....++..|...+...- -..|...-|..
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p~~r--AgLSlLgyCYY~~Q~f~~AA~CYeQL~-----ql~P~~~qYrlY 83 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSPRSR--AGLSLLGYCYYRLQEFALAAECYEQLG-----QLHPELEQYRLY 83 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCccch--HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhChHHHHHHHH
Confidence 3456667777777777777777665554443222 355667788888888888888874221 22344443332
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhhCCCCcHH
Q 036107 136 MVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT--LVKRNSVAHAYKVFLKFKDCISLSSQ 213 (441)
Q Consensus 136 li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~ 213 (441)
--..+-+.+.+.+|+.+...|.... . ...-..-+.+ .-..+++..+..+.++.... -+..
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~~-~---------------L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad 145 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDNP-A---------------LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEAD 145 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCCH-H---------------HHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cccc
Confidence 1234566788888888888876522 1 1111111111 22457777888888777531 1222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------
Q 036107 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQH-GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK------------- 279 (441)
Q Consensus 214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~------------- 279 (441)
+.+..-....+.|+++.|.+-|+...+- |.. ....||.-+..| +.|+++.|++...++.+.|++
T Consensus 146 ~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~teg 223 (459)
T KOG4340|consen 146 GQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEG 223 (459)
T ss_pred hhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceecc
Confidence 3333333446788899988888887764 444 456777766544 457888888888888877653
Q ss_pred CCH--------HHHHHHHHH-------HHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHH--HHHHHHhcCcc--------
Q 036107 280 PSV--------ITCTIVMHA-------LEKAKQIYEALKVYEKMKSD-DCLTDTSFYSS--LIFILSKAVRF-------- 333 (441)
Q Consensus 280 p~~--------~~~~~ll~~-------~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~--li~~~~~~g~~-------- 333 (441)
||+ ..-+.++.+ +.+.|+++.|.+-+..|.-+ .-..|.+|... +.++-++-+.-
T Consensus 224 iDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 224 IDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLL 303 (459)
T ss_pred CchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHH
Confidence 121 112333333 45778888888888888642 22334444332 22222221111
Q ss_pred -------chHHHHHHHHHhcCChhHHHHHHHH
Q 036107 334 -------LIYNTMISSACVRSEEGNALKLRQK 358 (441)
Q Consensus 334 -------~~~~~li~~~~~~g~~~~a~~~~~~ 358 (441)
.||..++-.||++.-++.|-+++.+
T Consensus 304 ~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 304 QQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6777788888888888877777755
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.09 E-value=0.00093 Score=58.99 Aligned_cols=174 Identities=9% Similarity=-0.034 Sum_probs=91.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-HHH
Q 036107 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG----VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK-PS-VIT 284 (441)
Q Consensus 211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~-~~~ 284 (441)
....+-.+...+.+.|+++.|...|++.... .|+. ..+..+..++.+.|++++|...++++.+..-. |. ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4445556666677777777777777776653 2321 34556666777777777777777777654221 11 113
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHhhCCCCCCHH-HHHHHH---HHHHhcCccchHHHHHHHHHhcCChhHH
Q 036107 285 CTIVMHALEKA--------KQIYEALKVYEKMKSDDCLTDTS-FYSSLI---FILSKAVRFLIYNTMISSACVRSEEGNA 352 (441)
Q Consensus 285 ~~~ll~~~~~~--------~~~~~a~~~~~~m~~~g~~~~~~-~~~~li---~~~~~~g~~~~~~~li~~~~~~g~~~~a 352 (441)
+..+-.++.+. |++++|.+.|+.+.+.. |+.. .+..+. ......+ ...-.+-..|.+.|++++|
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~--~~~~~~a~~~~~~g~~~~A 185 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLA--GKELYVARFYLKRGAYVAA 185 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCChHHH
Confidence 33333344433 66777888887777642 2221 111110 0000000 0012334455666666666
Q ss_pred HHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCChhhHHHH
Q 036107 353 LKLRQKIEEDSC-KP-DCETHARSLKMCCHKKRMKDGMLV 390 (441)
Q Consensus 353 ~~~~~~m~~~g~-~p-~~~t~~~li~~~~~~g~~~~a~~~ 390 (441)
+..+++..+..- .| ....+..+..++.+.|++++|..+
T Consensus 186 ~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~ 225 (235)
T TIGR03302 186 INRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDA 225 (235)
T ss_pred HHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666654311 12 234555666666666666666553
No 98
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.08 E-value=9.1e-05 Score=54.95 Aligned_cols=78 Identities=14% Similarity=0.203 Sum_probs=60.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036107 217 VLIHGWCKTRKSDYAQKAMKEMFQHGF-SPDGVSYTCFIEHYCREK--------DFRKVDYTLKEMQEKGCKPSVITCTI 287 (441)
Q Consensus 217 ~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~l~~~m~~~g~~p~~~~~~~ 287 (441)
.-|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. +.-+.+.+++.|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345556666888888888888888888 888888888888877643 23356778888888888999999988
Q ss_pred HHHHHHh
Q 036107 288 VMHALEK 294 (441)
Q Consensus 288 ll~~~~~ 294 (441)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8887765
No 99
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.07 E-value=5.4e-06 Score=47.10 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=27.5
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036107 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSC 364 (441)
Q Consensus 334 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 364 (441)
.+||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3699999999999999999999999998774
No 100
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.07 E-value=0.002 Score=63.91 Aligned_cols=309 Identities=10% Similarity=0.047 Sum_probs=185.0
Q ss_pred HHHHHH--hcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHH
Q 036107 94 VSEILR--KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMST 171 (441)
Q Consensus 94 ~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~ 171 (441)
....++ +.|..-|+.+.|.+..+++. +-..|..|-+.|.+.++++-|.-.+-.|.... ....+..
T Consensus 728 TRkaml~FSfyvtiG~MD~AfksI~~Ik---------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aR----gaRAlR~ 794 (1416)
T KOG3617|consen 728 TRKAMLDFSFYVTIGSMDAAFKSIQFIK---------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNAR----GARALRR 794 (1416)
T ss_pred HHHhhhceeEEEEeccHHHHHHHHHHHh---------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhh----hHHHHHH
Confidence 334444 67889999999987775543 55889999999999999999999988887633 1222222
Q ss_pred HHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 036107 172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251 (441)
Q Consensus 172 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 251 (441)
....++ ++-.-+.-.....|.+|+|+.+|.+-+. |..|=..|-..|.|++|.++-+.=-+-.+ ..||.
T Consensus 795 a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy 862 (1416)
T KOG3617|consen 795 AQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYY 862 (1416)
T ss_pred HHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHH
Confidence 222222 3333444455678999999999988865 66666777788999999988765433222 23555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH----------HcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107 252 CFIEHYCREKDFRKVDYTLKEMQ----------EKG---------CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312 (441)
Q Consensus 252 ~li~~~~~~g~~~~a~~l~~~m~----------~~g---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 312 (441)
.--.-+-..+|.+.|++.|++-. ... -.-|...|..--...-..|+.+.|..+|...++.
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~- 941 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY- 941 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh-
Confidence 55555556677777777766421 111 1224444555555556678888888777766542
Q ss_pred CCCCHHHHHHHHHHHHhcCcc-------------chHHHHHHHHHhcCChhHHHHHHHHHH----------HcCCC----
Q 036107 313 CLTDTSFYSSLIFILSKAVRF-------------LIYNTMISSACVRSEEGNALKLRQKIE----------EDSCK---- 365 (441)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~-------------~~~~~li~~~~~~g~~~~a~~~~~~m~----------~~g~~---- 365 (441)
-+++...|-.|+. ...-.+-+.|-..|++.+|..+|-+.. +.+++
T Consensus 942 --------fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 942 --------FSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred --------hhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 1222222222322 445567888999999999999986543 12211
Q ss_pred -------CCHH------------HHHHHHHHHHhcCChhhHHHHHH-----HHHHHHHC--CCCCCHHHHHHHHHHHHhc
Q 036107 366 -------PDCE------------THARSLKMCCHKKRMKDGMLVLN-----LMREMLSK--GIVPQESTHKMLAEELEKK 419 (441)
Q Consensus 366 -------p~~~------------t~~~li~~~~~~g~~~~a~~~~~-----~~~~m~~~--~~~p~~~~~~~ll~~~~~~ 419 (441)
|... -+...+..|-+.|.+.+|.++.- ..-+++.. .-..|+...+--.+-++..
T Consensus 1014 nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~ 1093 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENN 1093 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhH
Confidence 1000 12233344555555555544210 11111222 3344566666666667777
Q ss_pred CCccHHHHHHHHHHHHh
Q 036107 420 SLGNAKERIDELLTHAT 436 (441)
Q Consensus 420 g~~~~a~~~~~~m~~~~ 436 (441)
.++++|..++-.-++..
T Consensus 1094 ~qyekAV~lL~~ar~~~ 1110 (1416)
T KOG3617|consen 1094 QQYEKAVNLLCLAREFS 1110 (1416)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777665554443
No 101
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.06 E-value=6e-06 Score=46.92 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=9.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 215 FDVLIHGWCKTRKSDYAQKAMKEMF 239 (441)
Q Consensus 215 ~~~li~~~~~~~~~~~a~~~~~~m~ 239 (441)
||++|++|++.|++++|.++|++|.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3333333333333333333333333
No 102
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.0051 Score=56.37 Aligned_cols=269 Identities=10% Similarity=0.007 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 208 (441)
++.....+-..+...|+.++|...|++.+..++. +.......--.+.+.|+.++...+...+-...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy--------------~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~ 296 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD--------------NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV 296 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh--------------hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh
Confidence 4555666666666666666666666666553311 11111111122345566665555555542222
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 288 (441)
.-+...|-.-.......++++.|+.+-++-.+.. +.+...|-.=-..+...|+.++|.=.|+..+... +-+...|..|
T Consensus 297 ~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL 374 (564)
T KOG1174|consen 297 KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGL 374 (564)
T ss_pred hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHH
Confidence 2233334333344445556666666666655421 1122233222244556666777766666655431 1255667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 036107 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368 (441)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 368 (441)
+++|...|++.+|.-.-+...+. +.-+..+... +.+.+...--.+ -++|.+++++-. .+.|+.
T Consensus 375 ~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL-------------~g~~V~~~dp~~-rEKAKkf~ek~L--~~~P~Y 437 (564)
T KOG1174|consen 375 FHSYLAQKRFKEANALANWTIRL-FQNSARSLTL-------------FGTLVLFPDPRM-REKAKKFAEKSL--KINPIY 437 (564)
T ss_pred HHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhh-------------hcceeeccCchh-HHHHHHHHHhhh--ccCCcc
Confidence 77777777776665444332221 0001111000 000000000011 256666665543 235655
Q ss_pred H-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107 369 E-THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA 435 (441)
Q Consensus 369 ~-t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 435 (441)
. ..+.+...|...|..+++.. ++++- ....||....+.|-+.+...+.+++|.+-|..-.+.
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~---LLe~~--L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIK---LLEKH--LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHH---HHHHH--HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3 45555667777788888755 45552 245788888888888888888888887777655443
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.04 E-value=0.00095 Score=65.22 Aligned_cols=189 Identities=9% Similarity=0.017 Sum_probs=83.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 036107 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD 262 (441)
Q Consensus 183 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 262 (441)
-+|..|+..|+..+|..+..+.-+ -+||...|..+.+......-+++|.++++.-..+ .--.+-.-..+.++
T Consensus 429 ~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~ 500 (777)
T KOG1128|consen 429 PVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKD 500 (777)
T ss_pred HHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchh
Confidence 344455555555555544433311 2445555555555444444455555555443221 00000000112445
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHH
Q 036107 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISS 342 (441)
Q Consensus 263 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~ 342 (441)
++++.+.|+.-.+... ....+|-.+-.+..+.++++.|.+.|..-... .||.. ..||.+-.+
T Consensus 501 fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~---------------eaWnNls~a 562 (777)
T KOG1128|consen 501 FSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNA---------------EAWNNLSTA 562 (777)
T ss_pred HHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCch---------------hhhhhhhHH
Confidence 5555555554333211 12344545555555555555555555554442 33332 235555555
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 036107 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398 (441)
Q Consensus 343 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~ 398 (441)
|.+.|+-.+|...+++..... .-+...|...+-.-.+.|.+++|.+++..+..|.
T Consensus 563 yi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 555555555555555554433 2222333344444445555555555444444443
No 104
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.00046 Score=59.34 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=55.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 036107 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCK----TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260 (441)
Q Consensus 185 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 260 (441)
+..+.+..+++.|......|.+. -+..|.+-|-.++.+ .+.+.+|.-+|++|.++ ..|+.-+.+-...++...
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~i--ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQI--DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHh
Confidence 33444455555555555555331 222333333333332 23455555555555442 345555555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhh
Q 036107 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE-ALKVYEKMKS 310 (441)
Q Consensus 261 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~m~~ 310 (441)
|++++|..++++.....-+ +..|...+|.+-...|...+ ..+...+++.
T Consensus 221 ~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred cCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 5555555555555444322 34444444444444443322 3334444443
No 105
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.03 E-value=8.1e-05 Score=70.09 Aligned_cols=125 Identities=12% Similarity=0.088 Sum_probs=107.5
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 036107 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK--GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318 (441)
Q Consensus 241 ~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 318 (441)
.+.+.+......+++.+....+++.+..++-..+.. ....-..|..++|+.|.+.|..+++..++..=...|+.||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 355667888899999999999999999999998876 333334566799999999999999999999999999999998
Q ss_pred HHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 036107 319 FYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381 (441)
Q Consensus 319 ~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 381 (441)
+ +|.+|..+.+.|++..|.++..+|..++.-.+..|+..-+.+|.+.
T Consensus 140 s----------------~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 S----------------FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred h----------------HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7 7888888888888899999999999888888888888888888776
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.02 E-value=0.0077 Score=62.16 Aligned_cols=235 Identities=11% Similarity=0.094 Sum_probs=153.2
Q ss_pred CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhc----CHHHHHHHHHHHHhcCCHHHHHH
Q 036107 125 GYMHT-PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL----DTRAMSVLMDTLVKRNSVAHAYK 199 (441)
Q Consensus 125 g~~p~-~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~ 199 (441)
.+.|+ ...|..|+..+-..+++++|.++.+.-.+..+..+..-.+...+..- +......++.......++.-...
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEH 104 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHH
Confidence 44454 56888888888888999999999887766554444333332221110 11111133333333444433333
Q ss_pred HHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036107 200 VFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279 (441)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 279 (441)
+...+.. ..-+...+-.+..+|-+.|+.++|..+|+++.+.. +-|+.+.|.+-..|+.. ++++|.+++.+..+.
T Consensus 105 ~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--- 178 (906)
T PRK14720 105 ICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--- 178 (906)
T ss_pred HHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence 3333322 22333567778888889999999999999999876 44788899999999998 999999999887665
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-C--cc-chHHHHHHHHHhcCChhHHHHH
Q 036107 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA-V--RF-LIYNTMISSACVRSEEGNALKL 355 (441)
Q Consensus 280 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g--~~-~~~~~li~~~~~~g~~~~a~~~ 355 (441)
+...+++.++.++|..+.+.... +...+-.++...... | +. .++-.+-..|-..+++++++.+
T Consensus 179 ------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 179 ------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred ------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 66677888888888888876432 122222222222111 1 11 5577777888889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHH
Q 036107 356 RQKIEEDSCKPDCETHARSLKMCC 379 (441)
Q Consensus 356 ~~~m~~~g~~p~~~t~~~li~~~~ 379 (441)
|+...+.. .-|.....-++.+|.
T Consensus 246 LK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcC-CcchhhHHHHHHHHH
Confidence 99988654 336667777888776
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.02 E-value=0.00098 Score=57.33 Aligned_cols=161 Identities=9% Similarity=-0.016 Sum_probs=121.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHH
Q 036107 134 NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213 (441)
Q Consensus 134 ~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 213 (441)
...-..+.-.|+-+....+........ +. |....+.......+.|++..|...|.+....-++|..
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~---~~-----------d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~ 135 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY---PK-----------DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE 135 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC---cc-----------cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh
Confidence 444455555666666666655543311 11 6667777888888999999999999988777788999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293 (441)
Q Consensus 214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 293 (441)
.|+.+--+|-+.|++++|..-|.+..+--. -+...+|.+.-.+.-.|+++.|..++......+.. |...-..+.-...
T Consensus 136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~ 213 (257)
T COG5010 136 AWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVG 213 (257)
T ss_pred hhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHh
Confidence 999999999999999999999888887421 24566777877888889999999999888776544 6666777777888
Q ss_pred hcCCHHHHHHHHHHHhh
Q 036107 294 KAKQIYEALKVYEKMKS 310 (441)
Q Consensus 294 ~~~~~~~a~~~~~~m~~ 310 (441)
..|++++|+++-..-..
T Consensus 214 ~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 214 LQGDFREAEDIAVQELL 230 (257)
T ss_pred hcCChHHHHhhcccccc
Confidence 89999999887765443
No 108
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.013 Score=59.77 Aligned_cols=313 Identities=11% Similarity=0.034 Sum_probs=202.3
Q ss_pred CccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhh
Q 036107 41 GLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWA 120 (441)
Q Consensus 41 ~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 120 (441)
++.+++.+...+.-+ -.-..|...+-.++|.+|+......+ ...++|+.- -+.++.|.+.- ..
T Consensus 1038 rVm~YI~rLdnyDa~-----~ia~iai~~~LyEEAF~ifkkf~~n~------~A~~VLie~---i~~ldRA~efA---e~ 1100 (1666)
T KOG0985|consen 1038 RVMEYINRLDNYDAP-----DIAEIAIENQLYEEAFAIFKKFDMNV------SAIQVLIEN---IGSLDRAYEFA---ER 1100 (1666)
T ss_pred HHHHHHHHhccCCch-----hHHHHHhhhhHHHHHHHHHHHhcccH------HHHHHHHHH---hhhHHHHHHHH---Hh
Confidence 355555555443211 22333445555667777766333222 334445432 34455554422 11
Q ss_pred hhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHH
Q 036107 121 KTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKV 200 (441)
Q Consensus 121 ~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 200 (441)
- -.+..|..+-.+-.+.|...+|++-|-+. + |+..|.-++....+.|.+|+..+.
T Consensus 1101 ~------n~p~vWsqlakAQL~~~~v~dAieSyika---d----------------Dps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1101 C------NEPAVWSQLAKAQLQGGLVKDAIESYIKA---D----------------DPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred h------CChHHHHHHHHHHHhcCchHHHHHHHHhc---C----------------CcHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 14677888888888888888887765432 3 889999999999999999999998
Q ss_pred HHHhhh-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036107 201 FLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279 (441)
Q Consensus 201 ~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 279 (441)
+...++ .-.|.. =+.||-+|++.+++.+.+++.. -||......+-+-|...|.++.|.-+|...
T Consensus 1156 L~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v------ 1220 (1666)
T KOG0985|consen 1156 LLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV------ 1220 (1666)
T ss_pred HHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh------
Confidence 877654 333443 4679999999999988766542 388888888999999999999998887643
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc--------------chHHHHHHHHHh
Q 036107 280 PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF--------------LIYNTMISSACV 345 (441)
Q Consensus 280 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--------------~~~~~li~~~~~ 345 (441)
.-|..|...+...|++..|.+.-+... ++.||..+-.+|...+++ .-..-+|.-|-.
T Consensus 1221 ---SN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1221 ---SNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQD 1291 (1666)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHh
Confidence 457777777888888888765544322 556777777777776665 345668889999
Q ss_pred cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccH
Q 036107 346 RSEEGNALKLRQKIEEDSCK-PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNA 424 (441)
Q Consensus 346 ~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 424 (441)
.|.+++.+.+++.-. |++ .....|+.|.-.|++- ++++..+-+++|-. ....-.+++++..+..|.+
T Consensus 1292 rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsky-kp~km~EHl~LFws---------RvNipKviRA~eqahlW~E 1359 (1666)
T KOG0985|consen 1292 RGYFEELISLLEAGL--GLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWS---------RVNIPKVIRAAEQAHLWSE 1359 (1666)
T ss_pred cCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH---------hcchHHHHHHHHHHHHHHH
Confidence 999999888877643 332 3344667666666654 34554444444433 1223345556655555555
Q ss_pred HHHHHHH
Q 036107 425 KERIDEL 431 (441)
Q Consensus 425 a~~~~~~ 431 (441)
..-++..
T Consensus 1360 lvfLY~~ 1366 (1666)
T KOG0985|consen 1360 LVFLYDK 1366 (1666)
T ss_pred HHHHHHh
Confidence 5554443
No 109
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.95 E-value=6.6e-05 Score=62.81 Aligned_cols=101 Identities=17% Similarity=0.212 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc---chHHHHHHHHHhcCChhHH
Q 036107 281 SVITCTIVMHALEKA-----KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF---LIYNTMISSACVRSEEGNA 352 (441)
Q Consensus 281 ~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~~~~li~~~~~~g~~~~a 352 (441)
|..+|..+++.|.+. |.++-....+..|.+.|+.-|..+|+.|++.+=+ |.. ..+-++..-|- .+.+-|
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~n~fQ~~F~hyp--~Qq~c~ 122 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPRNFFQAEFMHYP--RQQECA 122 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccccHHHHHhccCc--HHHHHH
Confidence 555555555555432 4555555566666666666666666666666665 333 11222222222 234679
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 036107 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384 (441)
Q Consensus 353 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 384 (441)
++++++|+..|+.||..|+..++..+++.+..
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 99999999999999999999999999887763
No 110
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.95 E-value=0.0022 Score=62.79 Aligned_cols=185 Identities=14% Similarity=0.127 Sum_probs=124.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHH
Q 036107 136 MVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF 215 (441)
Q Consensus 136 li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 215 (441)
.|.+-....+|.+|+.+++.++... . -..-|..+...|+..|+++.|+++|.+-. .+
T Consensus 738 aieaai~akew~kai~ildniqdqk-~--------------~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~ 794 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK-T--------------ASGYYGEIADHYANKGDFEIAEELFTEAD--------LF 794 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc-c--------------ccccchHHHHHhccchhHHHHHHHHHhcc--------hh
Confidence 3445556778889999998887743 1 23456778899999999999999996653 37
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 036107 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295 (441)
Q Consensus 216 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 295 (441)
+--|.+|.+.|+|+.|.++-++.. |.......|-+--.-.-++|++.+|.+++-.+.+ |+ ..|..|-+.
T Consensus 795 ~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~ 863 (1636)
T KOG3616|consen 795 KDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKH 863 (1636)
T ss_pred HHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhh
Confidence 778999999999999999977664 4445667777777777889999999888765533 33 345677788
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc----------chHHHHHHHHHhcCChhHHHHHHH
Q 036107 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------LIYNTMISSACVRSEEGNALKLRQ 357 (441)
Q Consensus 296 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----------~~~~~li~~~~~~g~~~~a~~~~~ 357 (441)
|..++..++.+.--..-+.. |-..+-.-|-..|+. .-|.+-++.|-..+-+++|.++-+
T Consensus 864 ~~~ddmirlv~k~h~d~l~d---t~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 864 GLDDDMIRLVEKHHGDHLHD---THKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred CcchHHHHHHHHhChhhhhH---HHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHh
Confidence 88777777665432211111 111222222222222 227777777777777777766543
No 111
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.93 E-value=0.0068 Score=56.84 Aligned_cols=151 Identities=11% Similarity=0.043 Sum_probs=81.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 036107 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS-VITCTIVMHALEKAKQIYEA 301 (441)
Q Consensus 223 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a 301 (441)
...|.+++|+..++.+... .+-|+.-+......+.+.++.++|.+.++.+... .|+ ....-.+-+++.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3456666666666665543 2233444445555666666666666666666553 233 34444555666666666666
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 036107 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-LIYNTMISSACVRSEEGNALKLRQKIEEDS--CKPDCETHARSLKM 377 (441)
Q Consensus 302 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~ 377 (441)
..+++...... +-|...|..|-.+|...|+. ..--+--.+|...|+++.|+..+....+.. -.|+..-+...|..
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~ 471 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQ 471 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 66666655432 33444544444444444444 223333455566777777777776665432 23343344444443
No 112
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.0073 Score=54.27 Aligned_cols=191 Identities=9% Similarity=0.073 Sum_probs=104.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHH-HH----hcCCHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHH
Q 036107 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG-WC----KTRKSDYAQKAMKEMFQHGFSPDG-VSYTCFIEHY 257 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~----~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~ 257 (441)
|+--|.+.+++.+|..+...+.. ..|-....-.++.+ +. ....+.-|.+.|+-.-+.+..-|+ .--.++-+++
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~P-ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDP-TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred heeeecccccHHHHHHHHhhcCC-CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 34445566666666666655531 12222222222221 11 112345566666555444443333 2334455555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHH
Q 036107 258 CREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337 (441)
Q Consensus 258 ~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~ 337 (441)
.-..++++++-.++.++.-=..-|..- -.+.++++..|.+.+|+++|-......++ |..+| ..
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y---------------~s 432 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIK-NKILY---------------KS 432 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHH---------------HH
Confidence 556667777777766655433223333 34677888889999999999877655444 33332 33
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCChhhHHHHHHHHH
Q 036107 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL-KMCCHKKRMKDGMLVLNLMR 395 (441)
Q Consensus 338 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li-~~~~~~g~~~~a~~~~~~~~ 395 (441)
.+.++|.++++++.|++++-++.. ..+..+...+| .-|-+.+++--|.+.|+.++
T Consensus 433 ~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 433 MLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 455778888888888777666542 22334444444 46667777776666555433
No 113
>PLN02789 farnesyltranstransferase
Probab=97.90 E-value=0.019 Score=52.79 Aligned_cols=231 Identities=8% Similarity=-0.074 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 036107 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR-KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY 257 (441)
Q Consensus 179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 257 (441)
.++..+-..+...++.++|+.+.+.+-...+-+..+|+.--..+.+.| ++++++..++++.+... -+..+|+..-..+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l 116 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHH
Confidence 344455555666788999999998875544455556666555666666 68999999999987543 3556677665555
Q ss_pred HhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccch
Q 036107 258 CREKD--FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335 (441)
Q Consensus 258 ~~~g~--~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (441)
.+.|. .++++.+++.+.+...+ |..+|+...-++.+.|+++++.+.++++.+.+... ...
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N-~sA---------------- 178 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN-NSA---------------- 178 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc-hhH----------------
Confidence 56665 36788999898877554 78999999999999999999999999999876443 334
Q ss_pred HHHHHHHHHhc---CC----hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChhhHHHHHHHHHHHHHCCCCC
Q 036107 336 YNTMISSACVR---SE----EGNALKLRQKIEEDSCKPDCETHARSLKMCCHK----KRMKDGMLVLNLMREMLSKGIVP 404 (441)
Q Consensus 336 ~~~li~~~~~~---g~----~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~----g~~~~a~~~~~~~~~m~~~~~~p 404 (441)
|+.....+.+. |. .++.++...+++... .-|...|+-+-..+... +...+|.+ .+.+....+ ..
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~---~~~~~~~~~-~~ 253 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSS---VCLEVLSKD-SN 253 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHH---HHHHhhccc-CC
Confidence 33332222222 22 245666666665432 23445666666666553 23344544 444433322 33
Q ss_pred CHHHHHHHHHHHHhcC------------------CccHHHHHHHHHH
Q 036107 405 QESTHKMLAEELEKKS------------------LGNAKERIDELLT 433 (441)
Q Consensus 405 ~~~~~~~ll~~~~~~g------------------~~~~a~~~~~~m~ 433 (441)
+......|++.|+... ..++|.++++.+.
T Consensus 254 s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 254 HVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 5667888999998643 2366888888884
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.0011 Score=57.11 Aligned_cols=174 Identities=12% Similarity=0.043 Sum_probs=130.2
Q ss_pred hhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCC
Q 036107 83 LSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNG 162 (441)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~ 162 (441)
......|....+ .-+...+.-.|+-+.++.+.. .......-|...-+..+....+.|++..|...|.+.....
T Consensus 58 ~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~----~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-- 130 (257)
T COG5010 58 AAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQ----KSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-- 130 (257)
T ss_pred HHHhcCcchHHH-HHHHHHHHhcccccchHHHHh----hhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--
Confidence 334444544344 334455555565555555541 1122333456677778999999999999999999998844
Q ss_pred CccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107 163 YVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242 (441)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 242 (441)
.+|...|+.+--+|.+.|+++.|..-|.+..+-..-+....|.|--.+.-.|+.+.|..++......+
T Consensus 131 ------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 131 ------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred ------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 22899999999999999999999999988765444566678899888999999999999999988764
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 243 ~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
- -|..+-..+.-.....|++++|..+...-...
T Consensus 199 ~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~~ 231 (257)
T COG5010 199 A-ADSRVRQNLALVVGLQGDFREAEDIAVQELLS 231 (257)
T ss_pred C-CchHHHHHHHHHHhhcCChHHHHhhccccccc
Confidence 3 36677778888899999999999988765443
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.86 E-value=0.0014 Score=66.39 Aligned_cols=131 Identities=9% Similarity=0.077 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIE 255 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~ 255 (441)
+...+..|-....+.|+.++|+.+++..-+-.+-+......+...+.+.+++++|+..+++..... |+ ......+-.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHHH
Confidence 678888888888999999999999988866556677778888889999999999999999988753 44 456666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 256 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
++.+.|++++|..+|++....+ +-+..++..+-.++.+.|+.++|...|+...+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888999999999999998733 23478888888999999999999999988866
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.85 E-value=0.0014 Score=55.94 Aligned_cols=119 Identities=5% Similarity=0.056 Sum_probs=73.9
Q ss_pred CCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHH
Q 036107 143 SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGW 222 (441)
Q Consensus 143 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 222 (441)
.++.+++...+++..+..+. |...|..+-..|...|+++.|...|++...-.+.+...+..+-.++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~--------------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL 117 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ--------------NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVL 117 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44555555555555553322 6667777777777777777777777766444444566666666553
Q ss_pred -HhcCC--HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107 223 -CKTRK--SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 223 -~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
...|+ .++|.+++++..+... -+...+..+-..+.+.|++++|...++.+.+.
T Consensus 118 ~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 118 YYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45555 3677777777766432 14556666666677777777777777777664
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.83 E-value=0.0029 Score=64.29 Aligned_cols=149 Identities=11% Similarity=0.079 Sum_probs=124.2
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036107 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF 204 (441)
Q Consensus 125 g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 204 (441)
.+..+...+-.|-.+..+.|++++|..+++...+..|. +......+...+.+.+++++|+...++.
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd--------------~~~a~~~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD--------------SSEAFILMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC--------------cHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34457889999999999999999999999999986533 5677788889999999999999999998
Q ss_pred hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 036107 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT 284 (441)
Q Consensus 205 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~ 284 (441)
-..-+-+......+-.++.+.|++++|..+|++....+ +-+..++..+-.++-+.|+.++|...|+...+.- .|....
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~ 224 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARK 224 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHH
Confidence 66666777778888899999999999999999999743 2347889999999999999999999999987652 234455
Q ss_pred HHHHH
Q 036107 285 CTIVM 289 (441)
Q Consensus 285 ~~~ll 289 (441)
|+..+
T Consensus 225 ~~~~~ 229 (694)
T PRK15179 225 LTRRL 229 (694)
T ss_pred HHHHH
Confidence 65554
No 118
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.025 Score=52.01 Aligned_cols=286 Identities=13% Similarity=0.018 Sum_probs=176.0
Q ss_pred hhhHHHhhhhchhhH--HHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCH----HHHHHH
Q 036107 63 LASWVESLKLNEQSR--ISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTP----ETYNAM 136 (441)
Q Consensus 63 l~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~----~~y~~l 136 (441)
+.+.++....+.+.. ..-.+.+...-++...+...+.+.+...|+-.+|.-.|+... -+.|+. ..|..+
T Consensus 201 ika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~-----~~dpy~i~~MD~Ya~L 275 (564)
T KOG1174|consen 201 IKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL-----CANPDNVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh-----hCChhhhhhHHHHHHH
Confidence 556655544443333 333333334444444888999999999999999998885222 223332 245444
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHH
Q 036107 137 VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD 216 (441)
Q Consensus 137 i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 216 (441)
+ .+.|+.+....+....-... . .+...|-.-....-...+++.|+.+-++--+-.+.+...|-
T Consensus 276 L---~~eg~~e~~~~L~~~Lf~~~-~-------------~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~ali 338 (564)
T KOG1174|consen 276 L---GQEGGCEQDSALMDYLFAKV-K-------------YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALI 338 (564)
T ss_pred H---HhccCHhhHHHHHHHHHhhh-h-------------cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHH
Confidence 3 45566666666555554422 0 12222222233444567888888777665322122222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-
Q 036107 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM-HALE- 293 (441)
Q Consensus 217 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll-~~~~- 293 (441)
.=-+.+...++.++|.--|...... .| +..+|.-|+..|...|.+.+|..+-++.... ++-+..+.+.+- ..|.
T Consensus 339 lKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~ 415 (564)
T KOG1174|consen 339 LKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFP 415 (564)
T ss_pred hccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeecc
Confidence 2224567788999999889887653 33 6789999999999999999998887775442 222444444431 2222
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 036107 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373 (441)
Q Consensus 294 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 373 (441)
...--++|.++++.-.+. .|+-. ..-+.+...+...|..++++.+++.-.. ..||....+.
T Consensus 416 dp~~rEKAKkf~ek~L~~--~P~Y~---------------~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~ 476 (564)
T KOG1174|consen 416 DPRMREKAKKFAEKSLKI--NPIYT---------------PAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNH 476 (564)
T ss_pred CchhHHHHHHHHHhhhcc--CCccH---------------HHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHH
Confidence 222346777777765543 33321 2256677778888889999999988664 3788888888
Q ss_pred HHHHHHhcCChhhHHHHHH
Q 036107 374 SLKMCCHKKRMKDGMLVLN 392 (441)
Q Consensus 374 li~~~~~~g~~~~a~~~~~ 392 (441)
|-+.+...+.++++...|.
T Consensus 477 Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 477 LGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHHHHHhhhHHHHHHHHH
Confidence 8888888888888866444
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.82 E-value=0.00072 Score=66.01 Aligned_cols=193 Identities=18% Similarity=0.102 Sum_probs=143.3
Q ss_pred chhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccH
Q 036107 87 HETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL 166 (441)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~ 166 (441)
..|- ..+...+...+.+.|-..+|+..|+ ....|--+|.+|+..|+..+|.++..+-.+..+
T Consensus 394 lpp~-Wq~q~~laell~slGitksAl~I~E------------rlemw~~vi~CY~~lg~~~kaeei~~q~lek~~----- 455 (777)
T KOG1128|consen 394 LPPI-WQLQRLLAELLLSLGITKSALVIFE------------RLEMWDPVILCYLLLGQHGKAEEINRQELEKDP----- 455 (777)
T ss_pred CCCc-chHHHHHHHHHHHcchHHHHHHHHH------------hHHHHHHHHHHHHHhcccchHHHHHHHHhcCCC-----
Confidence 3444 3677778888889999999999884 457788899999999999999998887766443
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhc----------------------------CCHHHHHHHHHHhhhCCCCcHHHHHHH
Q 036107 167 AAMSTVMRRLDTRAMSVLMDTLVKR----------------------------NSVAHAYKVFLKFKDCISLSSQIFDVL 218 (441)
Q Consensus 167 ~~~~~~~~~~~~~~~~~li~~~~~~----------------------------g~~~~a~~~~~~~~~~~~~~~~~~~~l 218 (441)
|+.-|..+.+...+. ++++++.+.|+.--.-.+....+|-.+
T Consensus 456 ----------d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~ 525 (777)
T KOG1128|consen 456 ----------DPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGL 525 (777)
T ss_pred ----------cchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhc
Confidence 334444444444333 444555444443222123344456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297 (441)
Q Consensus 219 i~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 297 (441)
-.+..+.+++..|.+.|..-... .|| ...||.+-.+|.+.|+..+|...+++..+.+ .-+...|-.-+....+.|.
T Consensus 526 G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 526 GCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGE 602 (777)
T ss_pred cHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhccc
Confidence 66777888999999999888763 455 5789999999999999999999999998887 4467778888888899999
Q ss_pred HHHHHHHHHHHhh
Q 036107 298 IYEALKVYEKMKS 310 (441)
Q Consensus 298 ~~~a~~~~~~m~~ 310 (441)
+++|.+.+.++.+
T Consensus 603 ~eda~~A~~rll~ 615 (777)
T KOG1128|consen 603 FEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998865
No 120
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.81 E-value=0.00078 Score=63.24 Aligned_cols=127 Identities=13% Similarity=0.063 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 256 (441)
+..-...|+..+...++++.|..+|+++.... |+. .-.+...+...++-.+|.+++++..+. .+-|......-...
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~-pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD-PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEF 243 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC-CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 33444555666666677777777777774422 433 334666666667777777777777653 22345555555566
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 257 YCREKDFRKVDYTLKEMQEKGCKP-SVITCTIVMHALEKAKQIYEALKVYEKMK 309 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 309 (441)
+.+.++++.|+++.+++.+. .| +-.+|..|..+|.+.|+++.|...++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777777664 23 34577777777777777777777777665
No 121
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.80 E-value=0.067 Score=57.42 Aligned_cols=277 Identities=10% Similarity=-0.056 Sum_probs=164.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhcCCCc--cHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-c
Q 036107 135 AMVEALGKSKKFGLMWELVKEIDELSNGYV--SLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL-S 211 (441)
Q Consensus 135 ~li~~~~~~~~~~~a~~l~~~m~~~~~~~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~ 211 (441)
.....+...|++++|...+......-.... ..... .......+-..+...|++++|...++........ +
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~-------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~ 486 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTL-------QAEFNALRAQVAINDGDPEEAERLAELALAELPLTW 486 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhH-------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc
Confidence 334445677899999999988765321100 00000 0111222334456789999999999876321111 1
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC
Q 036107 212 ----SQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GF-SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE----KGC 278 (441)
Q Consensus 212 ----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~ 278 (441)
....+.+-..+...|++++|...+++.... |- .+...++..+-..+...|++++|...+++..+ .|.
T Consensus 487 ~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 487 YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 123455666778899999999999887642 11 11123455666678889999999999888654 232
Q ss_pred C--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHH
Q 036107 279 K--P-SVITCTIVMHALEKAKQIYEALKVYEKMKSDD--CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353 (441)
Q Consensus 279 ~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~ 353 (441)
. + ....+..+...+...|++++|...+.+..... ..+.... ..+..+...+...|+.++|.
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~la~~~~~~G~~~~A~ 632 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL--------------QCLAMLAKISLARGDLDNAR 632 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH--------------HHHHHHHHHHHHcCCHHHHH
Confidence 1 1 23344555566778899999999998876531 1121111 12455666778899999999
Q ss_pred HHHHHHHHcCCC-CCHHHH-----HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCccH
Q 036107 354 KLRQKIEEDSCK-PDCETH-----ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ---ESTHKMLAEELEKKSLGNA 424 (441)
Q Consensus 354 ~~~~~m~~~g~~-p~~~t~-----~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~ 424 (441)
+.+.+.....-. .....+ ...+..+...|+.+.|.+. +.+......... ...+..+..++...|+.++
T Consensus 633 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~---l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 709 (903)
T PRK04841 633 RYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANW---LRQAPKPEFANNHFLQGQWRNIARAQILLGQFDE 709 (903)
T ss_pred HHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHH---HHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHH
Confidence 999887542111 111111 1122344557888888763 333211111111 1124566777888999999
Q ss_pred HHHHHHHHHHH
Q 036107 425 KERIDELLTHA 435 (441)
Q Consensus 425 a~~~~~~m~~~ 435 (441)
|...++.....
T Consensus 710 A~~~l~~al~~ 720 (903)
T PRK04841 710 AEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHH
Confidence 99998886554
No 122
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.79 E-value=0.00034 Score=58.61 Aligned_cols=102 Identities=13% Similarity=0.184 Sum_probs=72.6
Q ss_pred CCcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc----------------CCHHHHH
Q 036107 209 SLSSQIFDVLIHGWCK-----TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE----------------KDFRKVD 267 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g~~~~a~ 267 (441)
..+..+|..+|..|.+ .|..+-....+..|.+-|+..|..+|+.||+.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3566667777777754 366777777778888888888888888888776542 1345688
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhh
Q 036107 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQI-YEALKVYEKMKS 310 (441)
Q Consensus 268 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~ 310 (441)
+++++|...|+.||..|+..|++.+++.+.. .+..++.-.|.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998776654 234444444433
No 123
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.77 E-value=0.045 Score=53.28 Aligned_cols=305 Identities=13% Similarity=0.137 Sum_probs=183.4
Q ss_pred HHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCC--C-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCc-----
Q 036107 93 KVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH--T-PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV----- 164 (441)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p--~-~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~----- 164 (441)
.+.-.+.+.|-+.|+++.|+.+|+ ......++- + ..+|-.--..=.+..+++.|+++.+..........
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvife---ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFE---KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHH---HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 566677788999999999999884 222222211 1 12343333444455678888887776654321100
Q ss_pred -cHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--CCCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 165 -SLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQI-FDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 165 -~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
+..+-..+.+ +...|+..++.--..|-++....+|+++-+ -..|.... |..+ +-...-++++.++|++-..
T Consensus 465 ~~~pvQ~rlhr--SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf---LEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 465 NSEPVQARLHR--SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF---LEEHKYFEESFKAYERGIS 539 (835)
T ss_pred CCCcHHHHHHH--hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHcCCc
Confidence 0111111111 567778888887888899999999988843 23333221 2222 2334568889999887655
Q ss_pred CCCCCCH-hhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHhhCCCC
Q 036107 241 HGFSPDG-VSYTCFIEHYCR---EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL--EKAKQIYEALKVYEKMKSDDCL 314 (441)
Q Consensus 241 ~g~~p~~-~~~~~li~~~~~---~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~g~~ 314 (441)
.=--|++ ..|+.-+.-+.+ ....+.|..+|++..+ |++|...-+--|+-+- -+.|....|..++++.-. +++
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~ 617 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVK 617 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCC
Confidence 3222444 467776665554 2358999999999998 7776644333333221 234777888888888543 344
Q ss_pred CCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHhcCChhhHHHHH
Q 036107 315 TDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL---KMCCHKKRMKDGMLVL 391 (441)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li---~~~~~~g~~~~a~~~~ 391 (441)
+.... ..||..|.--+..=.+...-.+|++.++. -||...-...| ..=++.|..++|+.++
T Consensus 618 ~a~~l--------------~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 618 EAQRL--------------DMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHH--------------HHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 43322 33777776665555555666777777654 66665443333 3445789999999987
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHH
Q 036107 392 NLMREMLSKGIVPQESTHKMLAEELEKKSLGNAK 425 (441)
Q Consensus 392 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 425 (441)
..-.+.. .-+.+..-|.+.=.-=.+.|+-+..
T Consensus 682 a~~sq~~--dPr~~~~fW~twk~FEvrHGnedT~ 713 (835)
T KOG2047|consen 682 AHGSQIC--DPRVTTEFWDTWKEFEVRHGNEDTY 713 (835)
T ss_pred HhhhhcC--CCcCChHHHHHHHHHHHhcCCHHHH
Confidence 7665532 3444566677766666888884433
No 124
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.77 E-value=0.0048 Score=60.52 Aligned_cols=138 Identities=12% Similarity=0.083 Sum_probs=95.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc
Q 036107 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332 (441)
Q Consensus 253 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 332 (441)
.|.+....+.|.+|+.+++.+++.... ..-|..+.+.|+..|+++.|+++|.+.-.
T Consensus 738 aieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~~---------------------- 793 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEADL---------------------- 793 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcch----------------------
Confidence 344555667788888888877766432 33466677888888888888888764321
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036107 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412 (441)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~l 412 (441)
++-.|..|.+.|+++.|.++-.+.. |-......|-.-..-+-+.|++.+|++++-.+ -.|+. -
T Consensus 794 ---~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti-------~~p~~-----a 856 (1636)
T KOG3616|consen 794 ---FKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI-------GEPDK-----A 856 (1636)
T ss_pred ---hHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc-------cCchH-----H
Confidence 7777888888888899988876653 44555566666666677788888887743211 13443 3
Q ss_pred HHHHHhcCCccHHHHHHHH
Q 036107 413 AEELEKKSLGNAKERIDEL 431 (441)
Q Consensus 413 l~~~~~~g~~~~a~~~~~~ 431 (441)
|+.|-+.|..++..++.+.
T Consensus 857 iqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHhhCcchHHHHHHHH
Confidence 5789999999998888765
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.77 E-value=0.029 Score=52.78 Aligned_cols=217 Identities=10% Similarity=0.016 Sum_probs=143.0
Q ss_pred HHHHHHHcCC-ChhHHHHHHHHHHH--hcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CC
Q 036107 135 AMVEALGKSK-KFGLMWELVKEIDE--LSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CI 208 (441)
Q Consensus 135 ~li~~~~~~~-~~~~a~~l~~~m~~--~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~ 208 (441)
.-|..+.+.| +.....++|+++.. .....++.- ++..=.-..++.++...-+.++. .-
T Consensus 207 ~Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~y----------------l~THPlp~~RIa~lr~ra~q~p~~~~~d 270 (484)
T COG4783 207 IGITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEY----------------LLTHPLPEERIADLRNRAEQSPPYNKLD 270 (484)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChH----------------HhcCCCchhHHHHHHHHHHhCCCCCCCC
Confidence 3455566777 56667788888874 221222211 11111123456666666677743 34
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 288 (441)
.|+...+...+.+......-..+..++.+-.+. .-...-|..-+. +...|++++|+..++.+... .+-|..-+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAA-QPDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHHHHHHHHh-CCCCHHHHHHH
Confidence 566666777777655544333333333333221 123344555554 45678999999999998775 33466666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 036107 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368 (441)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 368 (441)
.+.+.+.++..+|.+.++.+... .|+.. ..+-.+-.+|.+.|++.+|+.+++.-.... .-|.
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l--~P~~~---------------~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp 408 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALAL--DPNSP---------------LLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDP 408 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhc--CCCcc---------------HHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCc
Confidence 78999999999999999999885 44432 226677788999999999999999976542 5567
Q ss_pred HHHHHHHHHHHhcCChhhHHH
Q 036107 369 ETHARSLKMCCHKKRMKDGML 389 (441)
Q Consensus 369 ~t~~~li~~~~~~g~~~~a~~ 389 (441)
..|..|-.+|...|+..++..
T Consensus 409 ~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 409 NGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred hHHHHHHHHHHHhCchHHHHH
Confidence 789999999999999888755
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.74 E-value=0.0038 Score=50.30 Aligned_cols=99 Identities=7% Similarity=-0.120 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 256 (441)
++..+..+-..+...|++++|...|+..-..-+.+...|..+-.++.+.|++++|...|+...... +.+...+..+-.+
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~ 101 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVC 101 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 333344455566667777777777766644445566666667777777777777777777776542 2355666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 036107 257 YCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~ 276 (441)
+.+.|++++|...|+...+.
T Consensus 102 l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776553
No 127
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.73 E-value=0.0022 Score=54.68 Aligned_cols=120 Identities=8% Similarity=0.064 Sum_probs=99.0
Q ss_pred cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH-HhcCC--HHHHH
Q 036107 191 RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY-CREKD--FRKVD 267 (441)
Q Consensus 191 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~--~~~a~ 267 (441)
.++.+++...++..-...+.+...|..+-..|...|++++|...|++..+.. +-+...+..+-.++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 5667777777777655557788899999999999999999999999998854 23566777777764 67777 59999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312 (441)
Q Consensus 268 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 312 (441)
+++++..+.+.. +...+..+-..+.+.|++++|...|+.+.+..
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999887544 67888889999999999999999999998864
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.73 E-value=0.0014 Score=52.78 Aligned_cols=106 Identities=13% Similarity=-0.067 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 209 (441)
+..+...-..+...|++++|.+.|+......+. +...+..+-.++.+.|++++|...|+..-...+
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--------------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQPW--------------SWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 334556677888999999999999998875422 778899999999999999999999999866666
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 251 (441)
.+...+..+-.++.+.|++++|...|+...+. .|+...|.
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWS 129 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHH
Confidence 78888999999999999999999999999874 46554444
No 129
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.029 Score=56.08 Aligned_cols=178 Identities=17% Similarity=0.123 Sum_probs=110.2
Q ss_pred HHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCC
Q 036107 66 WVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKK 145 (441)
Q Consensus 66 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~ 145 (441)
+.+.|-+++|..+++...+ +.+|.+.|...|.+.+|.++- ....+..++ .||..--.-+-..++
T Consensus 810 AieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiA---E~~DRiHLr---~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIA---ETKDRIHLR---NTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHH---hhccceehh---hhHHHHHHHHHhhcc
Confidence 3455666667666664332 334556778888898888776 333333333 355555555566678
Q ss_pred hhHHHHHHHHHHHhcCC-----CccHHHHHHHHhh-cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHH
Q 036107 146 FGLMWELVKEIDELSNG-----YVSLAAMSTVMRR-LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLI 219 (441)
Q Consensus 146 ~~~a~~l~~~m~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 219 (441)
.+.|++.|++-....-. ......+...+.+ -|...|.-.-..+-..|+.+.|+.+|+..++ |-+++
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~V 945 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMV 945 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhhe
Confidence 88888888764321100 0011111111111 1566666666666678999999999988765 66777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273 (441)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 273 (441)
+..|-.|+.++|-++-++- -|....-.+-.-|-..|++.+|...|.+.
T Consensus 946 rI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred eeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 7777788888888776653 25555566667777777777777777654
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.70 E-value=0.0023 Score=50.87 Aligned_cols=95 Identities=15% Similarity=0.008 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 036107 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR 259 (441)
Q Consensus 180 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 259 (441)
....+...+...|+.++|.+.|+......+.+...+..+-..+.+.|++++|..+|++....+ +.+...+..+-..+..
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 334444455555555555555555533333444555555555555555555555555554432 2233444444455555
Q ss_pred cCCHHHHHHHHHHHHH
Q 036107 260 EKDFRKVDYTLKEMQE 275 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~ 275 (441)
.|++++|...|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 131
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.70 E-value=0.0027 Score=51.24 Aligned_cols=127 Identities=12% Similarity=0.087 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH--hhHHH
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ---IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG--VSYTC 252 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ 252 (441)
...|..++..+. .++...+.+.++.+....+.+.. ..-.+-..+...|++++|...|+........|+. ...-.
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 344555555542 55555555555555333233311 1112224455556666666666665554311211 12223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036107 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEK 307 (441)
Q Consensus 253 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 307 (441)
+-..+...|++++|+.+++...... .....+...-..+.+.|+.++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3445555566666666654432222 1223344444555556666666555543
No 132
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.056 Score=52.06 Aligned_cols=113 Identities=15% Similarity=0.110 Sum_probs=69.1
Q ss_pred hhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHH--HHHH-
Q 036107 64 ASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAM--VEAL- 140 (441)
Q Consensus 64 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~l--i~~~- 140 (441)
+-....++++++......+...+ |+...++..-+-+..+.+.+++|+.+.+... -..+++.. =.+|
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---------~~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNG---------ALLVINSFFFEKAYC 88 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---------hhhhcchhhHHHHHH
Confidence 33344456777777666666665 3333555555557788899999986653221 11222222 2334
Q ss_pred -HcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036107 141 -GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF 204 (441)
Q Consensus 141 -~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 204 (441)
.+.+..++|+..++.... . |..+...--..+-+.|++++|+.+|..+
T Consensus 89 ~Yrlnk~Dealk~~~~~~~-~----------------~~~ll~L~AQvlYrl~~ydealdiY~~L 136 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLDR-L----------------DDKLLELRAQVLYRLERYDEALDIYQHL 136 (652)
T ss_pred HHHcccHHHHHHHHhcccc-c----------------chHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356788888888873222 1 4445555556677888999999988887
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.68 E-value=0.0045 Score=49.98 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-h---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 036107 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG-V---SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV--ITCTIV 288 (441)
Q Consensus 215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~---~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~--~~~~~l 288 (441)
|..++..+. .++...+...++.+.... |+. . ..-.+-..+...|++++|...|++..+....|+. ...-.+
T Consensus 15 y~~~~~~~~-~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQALQ-AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 444444442 555555555555555432 111 1 1112224455556666666666665554422221 122334
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc
Q 036107 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332 (441)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 332 (441)
...+...|++++|...++....... ....+...-+.|.+.|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCC
Confidence 4555556666666666544332222 22334444455555555
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.62 E-value=0.0026 Score=59.86 Aligned_cols=117 Identities=14% Similarity=0.089 Sum_probs=94.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290 (441)
Q Consensus 211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 290 (441)
+-....+|+..+...++++.|..+|+++.+.. |+ ....+...+...++-.+|.+++.+..+.. +-+......-..
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE 242 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455667777788899999999999999864 55 44567888888889999999999988653 336777777778
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc
Q 036107 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333 (441)
Q Consensus 291 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (441)
.|.+.++++.|..+.+++.+.. +-+..+|..|..+|.+.|+.
T Consensus 243 fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~ 284 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDF 284 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCH
Confidence 8999999999999999999863 33455999999999999996
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.60 E-value=0.003 Score=50.24 Aligned_cols=107 Identities=10% Similarity=0.007 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 209 (441)
......+...+...|++++|.+.|+.....++. +...+..+...+.+.|++++|...++......+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY--------------NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC--------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345666777788899999999999998875522 678888888999999999999999998855556
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 252 (441)
.+...+..+-..|...|++++|.+.|+...+. .|+...+..
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 123 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYSE 123 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHH
Confidence 67777888888999999999999999998874 355554443
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.57 E-value=0.02 Score=59.27 Aligned_cols=218 Identities=10% Similarity=0.079 Sum_probs=112.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCcHHHHHHHHHHHHhcCCHHHHHHH------------------HH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC--ISLSSQIFDVLIHGWCKTRKSDYAQKA------------------MK 236 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~------------------~~ 236 (441)
+...+..|+..+...+++++|.++.+..... -.+....+..+ .+...++...+..+ ..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHHHHHHH
Confidence 6788889999999999999999999865332 22333333333 45555555544444 11
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 237 EMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 237 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 316 (441)
.|...+ -+...+-.+..+|-+.|+.+++.++++++.+.. +-|+.+.|.+-..|... ++++|.+++......-+ +
T Consensus 108 ~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~ 181 (906)
T PRK14720 108 KILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--K 181 (906)
T ss_pred HHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--h
Confidence 111110 111344455555556677777777777776665 33566666666666666 77777766666554311 0
Q ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 036107 317 TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED-SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395 (441)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 395 (441)
..-|+.+.. .|.-++. ....+++.-..+.+.+... |..--..++-.+-..|...++++++..+++.+-
T Consensus 182 ~kq~~~~~e---------~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL 250 (906)
T PRK14720 182 KKQYVGIEE---------IWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKIL 250 (906)
T ss_pred hhcchHHHH---------HHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 001000000 0221111 1112223333344444322 333444455555566667777777766444433
Q ss_pred HHHHCCCCCCHHHHHHHHHHHH
Q 036107 396 EMLSKGIVPQESTHKMLAEELE 417 (441)
Q Consensus 396 ~m~~~~~~p~~~~~~~ll~~~~ 417 (441)
+ .. +-|.....-++..|.
T Consensus 251 ~---~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 251 E---HD-NKNNKAREELIRFYK 268 (906)
T ss_pred h---cC-CcchhhHHHHHHHHH
Confidence 3 21 114445556666664
No 137
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.051 Score=47.16 Aligned_cols=175 Identities=15% Similarity=0.055 Sum_probs=89.8
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312 (441)
Q Consensus 233 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 312 (441)
++.+.+......-+......-...|+..|++++|++..... . +......=+..+.+..+++-|++.++.|.+-.
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34444444333333233333334566777777777776651 1 22222222344556667777777777777643
Q ss_pred CCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 036107 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392 (441)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 392 (441)
+..|.+.|-.+ .|......+++.+|.-+|++|-+ ...|+..+.+....++...|++++|..
T Consensus 168 ---ed~tLtQLA~a------------wv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~--- 228 (299)
T KOG3081|consen 168 ---EDATLTQLAQA------------WVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAES--- 228 (299)
T ss_pred ---hHHHHHHHHHH------------HHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHH---
Confidence 33343333333 22222334456777777777754 246777777777777777777777766
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHH
Q 036107 393 LMREMLSKGIVPQESTHKMLAEELEKKSLG-NAKERIDELLT 433 (441)
Q Consensus 393 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~ 433 (441)
++++...+... ++.+...++..-...|.. +-..+..+.++
T Consensus 229 lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 229 LLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 44444433332 233444444443444433 33344444443
No 138
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.11 Score=50.14 Aligned_cols=305 Identities=11% Similarity=0.068 Sum_probs=156.9
Q ss_pred hhhHHHhhhhchhhHHHHHhhhcCchhhH-HHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCC-H--HHHHHHHH
Q 036107 63 LASWVESLKLNEQSRISSHALSEDHETDV-DKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHT-P--ETYNAMVE 138 (441)
Q Consensus 63 l~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~-~--~~y~~li~ 138 (441)
-+-|-+.+++++|..|+.++.+++....- +...+++...-...+.+ +......|+ . ..||+ -.
T Consensus 117 AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~------------~q~v~~v~e~syel~yN~-Ac 183 (652)
T KOG2376|consen 117 AQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQL------------LQSVPEVPEDSYELLYNT-AC 183 (652)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHH------------HHhccCCCcchHHHHHHH-HH
Confidence 44566777888888888888776643332 22223332221111111 112223332 1 23443 45
Q ss_pred HHHcCCChhHHHHHHHHHHHhcC-----CCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHH
Q 036107 139 ALGKSKKFGLMWELVKEIDELSN-----GYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213 (441)
Q Consensus 139 ~~~~~~~~~~a~~l~~~m~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 213 (441)
.+...|++.+|+++++...+.+. +-....-+. ...+ .+---+.-.+-..|+.++|.+++........+|..
T Consensus 184 ~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie---~el~-~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 184 ILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIE---EELN-PIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP 259 (652)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHH---HHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch
Confidence 67788999999999999833220 000000000 0001 01112334455679999999999887444444442
Q ss_pred H----HHHHHHHHHhcCCHH-HHHHHHHHH-----------------------------------------hhC-CCCCC
Q 036107 214 I----FDVLIHGWCKTRKSD-YAQKAMKEM-----------------------------------------FQH-GFSPD 246 (441)
Q Consensus 214 ~----~~~li~~~~~~~~~~-~a~~~~~~m-----------------------------------------~~~-g~~p~ 246 (441)
. -|.|+..-....-++ .+++.++.. .+. +..|
T Consensus 260 ~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p- 338 (652)
T KOG2376|consen 260 SLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSP- 338 (652)
T ss_pred HHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCc-
Confidence 2 233322211111111 011111000 000 1112
Q ss_pred HhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHhhCCCCCC
Q 036107 247 GVSYTCFIEHYCREK--DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE--------KMKSDDCLTD 316 (441)
Q Consensus 247 ~~~~~~li~~~~~~g--~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~m~~~g~~~~ 316 (441)
...+.+++..+.+.. ...++.+++...-+....-....--.+++.....|+++.|.+++. .+.+.+..|.
T Consensus 339 ~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~ 418 (652)
T KOG2376|consen 339 ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG 418 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh
Confidence 234445554444322 355666666665544322234555666777888999999999999 6666666664
Q ss_pred HHHHHHHHHHHHhcCcc-------------------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 036107 317 TSFYSSLIFILSKAVRF-------------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH 371 (441)
Q Consensus 317 ~~~~~~li~~~~~~g~~-------------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 371 (441)
. ...++..+.+.+.. .+|.-....-.+.|+.++|..+++++.+.. .+|..+.
T Consensus 419 ~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l 495 (652)
T KOG2376|consen 419 T--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLL 495 (652)
T ss_pred H--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHH
Confidence 4 44555555555544 334444444456677777777777776543 5666777
Q ss_pred HHHHHHHHhcCChhhHHH
Q 036107 372 ARSLKMCCHKKRMKDGML 389 (441)
Q Consensus 372 ~~li~~~~~~g~~~~a~~ 389 (441)
..++.+|++. +.+.|..
T Consensus 496 ~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 496 VQLVTAYARL-DPEKAES 512 (652)
T ss_pred HHHHHHHHhc-CHHHHHH
Confidence 7777777654 3444433
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.46 E-value=0.16 Score=51.42 Aligned_cols=63 Identities=10% Similarity=0.008 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA 435 (441)
Q Consensus 372 ~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 435 (441)
+.+++.|.+.++.....+.+-+++.-.. .-+-|..+--.+|+.|+-.|-+..|.++++.|.-.
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt-~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK 502 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLT-KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK 502 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhh-cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH
Confidence 5677777777776654433333333111 11223345556677777777777777777766543
No 140
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.45 E-value=0.13 Score=50.22 Aligned_cols=172 Identities=9% Similarity=0.047 Sum_probs=109.9
Q ss_pred hcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHH
Q 036107 100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTR 179 (441)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~ 179 (441)
....++|++...+.+|+.... ...+......|...|.-....+-++-+..+++...+. ++.
T Consensus 110 q~l~~Q~~iT~tR~tfdrALr--aLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----------------~P~ 170 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALR--ALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----------------APE 170 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHH--hCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-----------------CHH
Confidence 334455666666666652211 1122223456777777777777777777777776663 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh-------hCCCCcHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCCCH--
Q 036107 180 AMSVLMDTLVKRNSVAHAYKVFLKFK-------DCISLSSQIFDVLIHGWCKTRKSDY---AQKAMKEMFQHGFSPDG-- 247 (441)
Q Consensus 180 ~~~~li~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~p~~-- 247 (441)
.-+--|..+++.++.++|-+.+..+- ...+.+...|.-+-+..++..+.-. +..++..+... -+|.
T Consensus 171 ~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g 248 (835)
T KOG2047|consen 171 AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLG 248 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHH
Confidence 66777888899999999998887761 1345566677777777776654433 33344444332 3443
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036107 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294 (441)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 294 (441)
..|++|-+-|.+.|.+++|..+|++-...- .+..-|+.+.++|+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHH
Confidence 578999999999999999999999866542 244455566666553
No 141
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.43 E-value=0.0029 Score=57.24 Aligned_cols=132 Identities=11% Similarity=0.094 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL 210 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 210 (441)
.+|-.+|...-+.+..+.|+.+|.+..+.+ .. .++.....++|. +...++.+.|..+|+..-+.+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~-----------~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f~~ 68 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RC-----------TYHVYVAYALME-YYCNKDPKRARKIFERGLKKFPS 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS------------THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CC-----------CHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHCCC
Confidence 467777777777777888888888877533 11 012233333332 22245566688888877555666
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG---VSYTCFIEHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
+...|...+..+.+.++.+.|..+|++.... +.++. ..|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777888888888888888888888887765 32222 47777777777788888888887777664
No 142
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.41 E-value=0.0053 Score=55.61 Aligned_cols=130 Identities=11% Similarity=0.110 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDC--ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256 (441)
Q Consensus 179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 256 (441)
.+|..+|...-+.+..+.|..+|.+..+. ...+.....++|. |...++.+.|.++|+...+. +..+...|..-++-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 47888999999999999999999998653 3444444444443 33356777899999999875 56678889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 257 YCREKDFRKVDYTLKEMQEKGCKPS---VITCTIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
+.+.++.+.|..+|++.... +.++ ...|...++-=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998765 3322 258999999889999999999999998874
No 143
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.40 E-value=0.019 Score=55.01 Aligned_cols=246 Identities=11% Similarity=0.004 Sum_probs=168.6
Q ss_pred ChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHH
Q 036107 104 SPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183 (441)
Q Consensus 104 ~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (441)
+.|++.+|.=+|+..-. .-.-+...|-.|-...+.+++-..|+..+.+-.+..+. +..+.-.
T Consensus 297 ~nG~L~~A~LafEAAVk----qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~--------------NleaLma 358 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVK----QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT--------------NLEALMA 358 (579)
T ss_pred hcCCchHHHHHHHHHHh----hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc--------------cHHHHHH
Confidence 44556666655532211 11115678999999999999999999999998886533 7888889
Q ss_pred HHHHHHhcCCHHHHHHHHHHh-hhC-----CCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hCCCCCCHhhHHHH
Q 036107 184 LMDTLVKRNSVAHAYKVFLKF-KDC-----ISL---SSQIFDVLIHGWCKTRKSDYAQKAMKEMF-QHGFSPDGVSYTCF 253 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~~~~-~~~-----~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~l 253 (441)
|--.|...|.-..|+..++.. +.. ..+ +...-+. ..+.....+....++|-++. +.+..+|..++..|
T Consensus 359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L 436 (579)
T KOG1125|consen 359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGL 436 (579)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhh
Confidence 999999999999999988764 221 000 1100000 12222334556667776665 45545677777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc
Q 036107 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333 (441)
Q Consensus 254 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (441)
---|.-.|++++|...|+...... +-|...||-|-..++...+.++|...|.+..+. .|+-+
T Consensus 437 GVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yV--------------- 498 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYV--------------- 498 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCee---------------
Confidence 777888999999999999988753 236889999999999999999999999999884 44322
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHH---HHcC------CCCCHHHHHHHHHHHHhcCChhhH
Q 036107 334 LIYNTMISSACVRSEEGNALKLRQKI---EEDS------CKPDCETHARSLKMCCHKKRMKDG 387 (441)
Q Consensus 334 ~~~~~li~~~~~~g~~~~a~~~~~~m---~~~g------~~p~~~t~~~li~~~~~~g~~~~a 387 (441)
.++-.|--+|...|.+++|.+.|-.. ...+ ..++...|..|=.++.-.++.|.+
T Consensus 499 R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 499 RVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred eeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 22445666788899999999888654 3331 123345566665566666666644
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.076 Score=45.81 Aligned_cols=158 Identities=10% Similarity=-0.045 Sum_probs=117.4
Q ss_pred CCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHH
Q 036107 143 SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT-RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG 221 (441)
Q Consensus 143 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 221 (441)
..+.++..+++.++........ .+++. ..|.-++-+....|+.+.|...+++++..++-+..+--.=---
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~---------~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~ 95 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGA---------LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML 95 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcc---------cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 3577888888888876431110 01122 4566677788899999999999999987773333322211222
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036107 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301 (441)
Q Consensus 222 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 301 (441)
+--.|++++|.++|+...+.. +.|.++|-.=+...-..|+..+|++-+.+..+. ...|...|.-+-..|...|++++|
T Consensus 96 lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHH
Confidence 344789999999999999876 456778877777777788878888888777665 556999999999999999999999
Q ss_pred HHHHHHHhhC
Q 036107 302 LKVYEKMKSD 311 (441)
Q Consensus 302 ~~~~~~m~~~ 311 (441)
.-.++++.-.
T Consensus 174 ~fClEE~ll~ 183 (289)
T KOG3060|consen 174 AFCLEELLLI 183 (289)
T ss_pred HHHHHHHHHc
Confidence 9999999875
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.36 E-value=0.0045 Score=44.88 Aligned_cols=92 Identities=16% Similarity=0.092 Sum_probs=45.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036107 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296 (441)
Q Consensus 217 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 296 (441)
.+...+...|++++|..++++..+.. +.+...+..+...+...|++++|.+.++...+... .+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHH
Confidence 34444455555555555555554431 11224444455555555555555555555544322 12244555555555555
Q ss_pred CHHHHHHHHHHHhh
Q 036107 297 QIYEALKVYEKMKS 310 (441)
Q Consensus 297 ~~~~a~~~~~~m~~ 310 (441)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 55655555555443
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.27 E-value=0.013 Score=45.04 Aligned_cols=94 Identities=15% Similarity=0.020 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCHhhHHHHHHHH
Q 036107 183 VLMDTLVKRNSVAHAYKVFLKFKDCISL---SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS--PDGVSYTCFIEHY 257 (441)
Q Consensus 183 ~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~ 257 (441)
.+...+.+.|++++|.+.|..+....+. ....+..+...+.+.|+++.|.+.|+......-. .....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3334444455555555555544221111 1223333444455555555555555554432100 0122344444444
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 036107 258 CREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 258 ~~~g~~~~a~~l~~~m~~~ 276 (441)
.+.|+.++|...++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 4455555555555554443
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.26 E-value=0.0053 Score=44.47 Aligned_cols=91 Identities=12% Similarity=0.095 Sum_probs=48.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH
Q 036107 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 263 (441)
+...+...|++++|...++......+.+...+..+...+...+++++|.+.|+...... +.+..++..+...+...|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 34444555666666666655533223333445555555555666666666666555432 12234555555566666666
Q ss_pred HHHHHHHHHHHH
Q 036107 264 RKVDYTLKEMQE 275 (441)
Q Consensus 264 ~~a~~l~~~m~~ 275 (441)
++|...+....+
T Consensus 85 ~~a~~~~~~~~~ 96 (100)
T cd00189 85 EEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHc
Confidence 666666655543
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.25 E-value=0.014 Score=44.91 Aligned_cols=101 Identities=12% Similarity=0.036 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC--- 207 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--- 207 (441)
.++-.....+.+.|++++|.+.|+++....+..+. ....+..+...+.+.|+++.|...|+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY-----------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK 71 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc-----------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence 34566677788899999999999999875433211 3456677888999999999999999987432
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242 (441)
Q Consensus 208 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 242 (441)
.......+..+..++.+.|+.++|.+.+++..+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 72 SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 22234567777888999999999999999998763
No 149
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.19 E-value=0.098 Score=53.59 Aligned_cols=179 Identities=12% Similarity=0.104 Sum_probs=105.6
Q ss_pred hHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHH
Q 036107 76 SRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH-TPETYNAMVEALGKSKKFGLMWELVK 154 (441)
Q Consensus 76 ~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~~~~~~~~~a~~l~~ 154 (441)
..++..+......+....++..|...|....+...|.+.|+-..+ +.| |...+......|++..+++.|.++.-
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe-----LDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE-----LDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 334444444444455555677777777777788888888853322 222 46678888889999999999888844
Q ss_pred HHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 036107 155 EIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA 234 (441)
Q Consensus 155 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 234 (441)
...+..+... -...|..+--.|.+.++...|..-|+..-+--+.|...|..+..+|..+|++..|.++
T Consensus 551 ~~~qka~a~~------------~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKv 618 (1238)
T KOG1127|consen 551 RAAQKAPAFA------------CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKV 618 (1238)
T ss_pred HHhhhchHHH------------HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHh
Confidence 4333221110 1122222333455666777776666655433455666777778888888888888888
Q ss_pred HHHHhhCCCCCCHhhHHHHHHH--HHhcCCHHHHHHHHHHHH
Q 036107 235 MKEMFQHGFSPDGVSYTCFIEH--YCREKDFRKVDYTLKEMQ 274 (441)
Q Consensus 235 ~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~l~~~m~ 274 (441)
|.+.... .|+ .+|...-.+ -+..|++.++...+....
T Consensus 619 F~kAs~L--rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 619 FTKASLL--RPL-SKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred hhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8766542 232 233332222 234566777766666553
No 150
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.18 E-value=0.24 Score=47.53 Aligned_cols=175 Identities=13% Similarity=0.085 Sum_probs=131.4
Q ss_pred HHHHHHHHHHhhh--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHH
Q 036107 194 VAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTL 270 (441)
Q Consensus 194 ~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~ 270 (441)
.+...+.++++.. ...|+. +|..+|+.--+...++.|..+|.+.++.+..+ ++.+++++|.-+|. ++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 4455555665532 445554 68888998889999999999999999988777 78899999998775 6889999999
Q ss_pred HH-HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCCh
Q 036107 271 KE-MQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE 349 (441)
Q Consensus 271 ~~-m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~ 349 (441)
+- |++.|-. ..--..-+.-+...++-..+..+|++...+++.|+... ..|..+|.-=...|++
T Consensus 425 eLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~--------------~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 425 ELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSK--------------EIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhH--------------HHHHHHHHHHHhcccH
Confidence 87 4444432 33345667778889999999999999999987776654 5599999999999999
Q ss_pred hHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChhh
Q 036107 350 GNALKLRQKIEED---SCKPDCETHARSLKMCCHKKRMKD 386 (441)
Q Consensus 350 ~~a~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~ 386 (441)
..+.++-+++... ...|...+-..+++-|.-.+.+..
T Consensus 489 ~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred HHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence 9999998876532 134444455667777776666544
No 151
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.10 E-value=0.41 Score=48.69 Aligned_cols=225 Identities=14% Similarity=0.121 Sum_probs=149.9
Q ss_pred HHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHH--HhcCCHHHHHHHHHHhhhCCCCcHHHHHH
Q 036107 140 LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL--VKRNSVAHAYKVFLKFKDCISLSSQIFDV 217 (441)
Q Consensus 140 ~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 217 (441)
....+++..|.....+..+..|. ..|..++.++ .+.|+.++|..+++....--.-|..|...
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn----------------~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~ 82 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPN----------------ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQF 82 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCC----------------cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHH
Confidence 34678899999999988875522 3445555555 57899999999998885433348889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297 (441)
Q Consensus 218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 297 (441)
+-.+|-..++.++|..+|+...+. -|+..-...+..+|++.+++.+-.+.--+|-+ ..+-+.+.|-++++.+...-.
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIF 159 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhcc
Confidence 999999999999999999998864 57888888888999999988776555555544 234456677677766654321
Q ss_pred ----------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHH-HHHHcCCCC
Q 036107 298 ----------IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ-KIEEDSCKP 366 (441)
Q Consensus 298 ----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p 366 (441)
..-|.+.++.+.+.+-+.....= + ..|- ..+-..|++++|++++. ..-+.-..-
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE-----~-------~Lyl---~iL~~~~k~~eal~~l~~~la~~l~~~ 224 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKGKIESEAE-----I-------ILYL---LILELQGKYQEALEFLAITLAEKLTSA 224 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCCccchHHH-----H-------HHHH---HHHHhcccHHHHHHHHHHHHHHhcccc
Confidence 23466666666664312221100 0 1122 22345677899999984 444444444
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC
Q 036107 367 DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG 401 (441)
Q Consensus 367 ~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~ 401 (441)
+...-+.-+..+...+++.+..+ +..++..+|
T Consensus 225 ~~~l~~~~~dllk~l~~w~~l~~---l~~~Ll~k~ 256 (932)
T KOG2053|consen 225 NLYLENKKLDLLKLLNRWQELFE---LSSRLLEKG 256 (932)
T ss_pred chHHHHHHHHHHHHhcChHHHHH---HHHHHHHhC
Confidence 55555566777778888888644 555555444
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.17 Score=43.69 Aligned_cols=189 Identities=16% Similarity=0.122 Sum_probs=131.7
Q ss_pred HHHHHHhhhhhHhhhhcCC-CCCCHH-HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHH
Q 036107 107 KVVEALKCFCFTWAKTQTG-YMHTPE-TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184 (441)
Q Consensus 107 ~~~~A~~~~~~~~~~~~~g-~~p~~~-~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (441)
+.++.++++..+......| ..|+.. .|..++-+....|+.+.|...+++....-++.+ .+-..-
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~--------------RV~~lk 92 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK--------------RVGKLK 92 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh--------------hHHHHH
Confidence 3455566666555555556 666654 677778888889999999999999887432221 111111
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 036107 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264 (441)
Q Consensus 185 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 264 (441)
--.+--.|+.++|.++++.+-+.-+.|.+++-.=+...--.|+--+|.+-+.+..+. +.-|...|.-+-..|...|+++
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHH
Confidence 122344689999999999986655778888876666666677767777777776654 5679999999999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhCC
Q 036107 265 KVDYTLKEMQEKGCKP-SVITCTIVMHALEK---AKQIYEALKVYEKMKSDD 312 (441)
Q Consensus 265 ~a~~l~~~m~~~g~~p-~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~g 312 (441)
+|.-.++++.=. .| +...|..+-..+.- ..+.+.+.++|.+..+..
T Consensus 172 kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 172 KAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 999999998764 34 34444444444433 345677888888887754
No 153
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.05 E-value=0.021 Score=46.13 Aligned_cols=58 Identities=7% Similarity=0.084 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273 (441)
Q Consensus 215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 273 (441)
...++..+...|+++.|.++.+.+.... +-|...|..+|.++...|+..+|.+.|+.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3334444444555555555555554421 123445555555555555555555555544
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.04 E-value=0.0011 Score=47.83 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHhhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036107 226 RKSDYAQKAMKEMFQHGF-SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV 304 (441)
Q Consensus 226 ~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 304 (441)
|+++.|+.+|+++.+... .++...+-.+-.++.+.|++++|..+++. .+.+.. +....-.+..+|.+.|++++|.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 455555555555554321 11223333355555556666666665555 111111 112222334555556666666555
Q ss_pred HHH
Q 036107 305 YEK 307 (441)
Q Consensus 305 ~~~ 307 (441)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 155
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.02 E-value=0.013 Score=45.68 Aligned_cols=54 Identities=6% Similarity=-0.086 Sum_probs=35.7
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc
Q 036107 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEKA 295 (441)
Q Consensus 242 g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~~~~~ll~~~~~~ 295 (441)
...|+..+..+++.+|+.+|++..|+++.+...+. +++.+..+|..|++=+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 45567777777777777777777777777776543 5666667777776654433
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.00 E-value=0.23 Score=45.10 Aligned_cols=229 Identities=13% Similarity=0.074 Sum_probs=120.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc
Q 036107 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211 (441)
Q Consensus 132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 211 (441)
.|...-..|-..+++++|.+.|.+........-+. ..-...|......|- .+++++|.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~--------~~Aa~~~~~Aa~~~k-~~~~~~Ai------------- 94 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK--------FEAAKAYEEAANCYK-KGDPDEAI------------- 94 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H--------HHHHHHHHHHHHHHH-HTTHHHHH-------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHHHH-hhCHHHHH-------------
Confidence 45555666777788888888887765421000000 000111111111211 11333333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-CCHHHHHHHHHHHHH----cCCCC-CHHHH
Q 036107 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE-KDFRKVDYTLKEMQE----KGCKP-SVITC 285 (441)
Q Consensus 212 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~----~g~~p-~~~~~ 285 (441)
..|...+..|.+.|++..|-+++..+-+ .|-.. |++++|.+.|++..+ .|..- -..++
T Consensus 95 -~~~~~A~~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~ 158 (282)
T PF14938_consen 95 -ECYEKAIEIYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECL 158 (282)
T ss_dssp -HHHHHHHHHHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred -HHHHHHHHHHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHH
Confidence 2355556677777887777776666543 34445 788888888887643 23111 13456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc--C
Q 036107 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED--S 363 (441)
Q Consensus 286 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g 363 (441)
..+...+.+.|++++|.++|++....-...+..-|+. = ..|-..+-.+...|++..|.+.|++.... +
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~-~---------~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA-K---------EYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH-H---------HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH-H---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7778889999999999999999877543222111100 0 11334455677789999999999998743 3
Q ss_pred CCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036107 364 CKPD--CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLA 413 (441)
Q Consensus 364 ~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll 413 (441)
+..+ ......||.+| +.|+.+.....+.-++. -.+.|..--..|+
T Consensus 229 F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~----~~~ld~w~~~~l~ 275 (282)
T PF14938_consen 229 FASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDS----ISRLDNWKTKMLL 275 (282)
T ss_dssp STTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTT----SS---HHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcc----cCccHHHHHHHHH
Confidence 4333 33566667776 45565554443334444 2344554444443
No 157
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.97 E-value=0.028 Score=46.57 Aligned_cols=63 Identities=11% Similarity=-0.038 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP--SVITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
..|..+...+...|++++|...|++.......+ ...++..+-..+.+.|++++|...++...+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444555555555555544332111 123444444555555555555555554443
No 158
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.95 E-value=0.042 Score=44.29 Aligned_cols=118 Identities=17% Similarity=0.126 Sum_probs=74.1
Q ss_pred HhcCCHHHHHHHHHHHhhC--C-CCCCHH--HHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036107 293 EKAKQIYEALKVYEKMKSD--D-CLTDTS--FYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367 (441)
Q Consensus 293 ~~~~~~~~a~~~~~~m~~~--g-~~~~~~--~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 367 (441)
...++.+.+...+.++... | +-++.. .|..-.....+.........++..+...|++++|+.+.+...... .-|
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~ 95 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD-PYD 95 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCC
Confidence 4556677777777666552 2 222211 122222222222222447778888889999999999999998653 456
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH--CCCCCCHHHHHH
Q 036107 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLS--KGIVPQESTHKM 411 (441)
Q Consensus 368 ~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~--~~~~p~~~~~~~ 411 (441)
...|..+|.+|...|+...|.++++.+.++.. .|+.|+..+-..
T Consensus 96 E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 96 EEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 77999999999999999999999998877655 499999886443
No 159
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.94 E-value=0.091 Score=47.71 Aligned_cols=158 Identities=11% Similarity=0.131 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh--cCC----HHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCC-
Q 036107 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR--EKD----FRKVDYTLKEMQEKGC---KPSVITCTIVMHALEKAKQ- 297 (441)
Q Consensus 228 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~----~~~a~~l~~~m~~~g~---~p~~~~~~~ll~~~~~~~~- 297 (441)
+++...+++.|.+.|+..+..+|-+..-.... ..+ ..+|..+|+.|++... .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 55677889999999999988777663333332 233 5679999999998742 4566778887765 3333
Q ss_pred ---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCHHHH
Q 036107 298 ---IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE---EGNALKLRQKIEEDSCKPDCETH 371 (441)
Q Consensus 298 ---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~t~ 371 (441)
.+.++.+|+.+.+.|+..+.... +.+-|-++..... +..+.++++.+++.|+++....|
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ---------------~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~y 220 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQ---------------FLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHY 220 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHH---------------HHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccc
Confidence 35677888888888887765531 2222223322222 35788889999999999888887
Q ss_pred HHHHHHHHhcCC-h-hhHHHHHHHHHHHHHC-CCC
Q 036107 372 ARSLKMCCHKKR-M-KDGMLVLNLMREMLSK-GIV 403 (441)
Q Consensus 372 ~~li~~~~~~g~-~-~~a~~~~~~~~~m~~~-~~~ 403 (441)
..+ ..++-.+. . ..+..+.++.+.+.+. ++.
T Consensus 221 p~l-GlLall~~~~~~~~~~i~ev~~~L~~~k~~~ 254 (297)
T PF13170_consen 221 PTL-GLLALLEDPEEKIVEEIKEVIDELKEQKGFG 254 (297)
T ss_pred cHH-HHHHhcCCchHHHHHHHHHHHHHHhhCcccC
Confidence 544 33333333 3 4455555555555543 555
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.92 E-value=0.022 Score=53.58 Aligned_cols=102 Identities=13% Similarity=0.055 Sum_probs=77.5
Q ss_pred HHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHH
Q 036107 138 EALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV 217 (441)
Q Consensus 138 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 217 (441)
..+...|+++.|++.|++..+..+. +...|..+..++.+.|++++|+..++......+.+...|..
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~--------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~ 75 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN--------------NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR 75 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 3455678999999999998886532 56778888888888999999999988875544556777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 036107 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255 (441)
Q Consensus 218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 255 (441)
+-.+|...|++++|...|++..+. .|+.......+.
T Consensus 76 lg~~~~~lg~~~eA~~~~~~al~l--~P~~~~~~~~l~ 111 (356)
T PLN03088 76 KGTACMKLEEYQTAKAALEKGASL--APGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 888888999999999999888874 455544444443
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.90 E-value=0.026 Score=46.76 Aligned_cols=83 Identities=7% Similarity=-0.065 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 209 (441)
...|..+...+...|++++|...|++.....+..+. ...++..+-..+...|+.++|+..++..-...+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~-----------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~ 103 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD-----------RSYILYNIGLIHTSNGEHTKALEYYFQALERNP 103 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 345566666666677777777777776653311110 234566666667777777777777766533223
Q ss_pred CcHHHHHHHHHHHH
Q 036107 210 LSSQIFDVLIHGWC 223 (441)
Q Consensus 210 ~~~~~~~~li~~~~ 223 (441)
....++..+...+.
T Consensus 104 ~~~~~~~~la~i~~ 117 (168)
T CHL00033 104 FLPQALNNMAVICH 117 (168)
T ss_pred CcHHHHHHHHHHHH
Confidence 33344444444444
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.88 E-value=0.055 Score=45.02 Aligned_cols=92 Identities=7% Similarity=-0.044 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 209 (441)
...|..+-..+...|++++|...|++.....+..+. ....+..+...+.+.|++++|...+.+.-...+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND-----------RSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 345667777777888888888888887764422210 135677777788888888888888877644333
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHH
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQ 232 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~ 232 (441)
-+...+..+...+...|+...+.
T Consensus 104 ~~~~~~~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 104 KQPSALNNIAVIYHKRGEKAEEA 126 (172)
T ss_pred ccHHHHHHHHHHHHHcCChHhHh
Confidence 45555666666776666644433
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.86 E-value=0.072 Score=44.33 Aligned_cols=86 Identities=8% Similarity=-0.061 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-C-CCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-C-ISL-SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 253 (441)
....+..+...+...|++++|...|++.-. . -.+ ....+..+...+.+.|++++|...+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344455555555566666666666655421 1 111 12345555555556666666666665555421 1123334444
Q ss_pred HHHHHhcCCH
Q 036107 254 IEHYCREKDF 263 (441)
Q Consensus 254 i~~~~~~g~~ 263 (441)
...+...|+.
T Consensus 113 g~~~~~~g~~ 122 (172)
T PRK02603 113 AVIYHKRGEK 122 (172)
T ss_pred HHHHHHcCCh
Confidence 4444444443
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.85 E-value=0.0048 Score=44.44 Aligned_cols=77 Identities=12% Similarity=0.114 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHhhhCCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHH
Q 036107 192 NSVAHAYKVFLKFKDCIS--LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDY 268 (441)
Q Consensus 192 g~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~ 268 (441)
|+++.|+.+|+++-...+ ++...+-.+..+|.+.|++++|..++++ .+ +.|+ ....-.+-.++.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 455555555555422111 1222333345555555555555555555 11 1111 1222233444555555555555
Q ss_pred HHH
Q 036107 269 TLK 271 (441)
Q Consensus 269 l~~ 271 (441)
+|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 165
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.82 E-value=0.51 Score=45.35 Aligned_cols=161 Identities=12% Similarity=0.116 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036107 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK---DFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALK 303 (441)
Q Consensus 228 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~l~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~ 303 (441)
-+++..+++.....-..-+..+|..+.+.=-..- ..+....++++.... .+.|+ .+|...|+.--+..-+..|+.
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 3455566665554322334444444433211111 245555555555443 33333 456666666666666777777
Q ss_pred HHHHHhhCCCCC-CHHHHHHHHHHHHhcCccchHHH-----------------HHHHHHhcCChhHHHHHHHHHHHcCCC
Q 036107 304 VYEKMKSDDCLT-DTSFYSSLIFILSKAVRFLIYNT-----------------MISSACVRSEEGNALKLRQKIEEDSCK 365 (441)
Q Consensus 304 ~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~~~~-----------------li~~~~~~g~~~~a~~~~~~m~~~g~~ 365 (441)
+|.+..+.+..+ +..+++++|+-||.......|+. -+.-+...++-..|-.+|++....++.
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 777776665555 55555555555555544422222 333344444555666667776666555
Q ss_pred CCH--HHHHHHHHHHHhcCChhhHHH
Q 036107 366 PDC--ETHARSLKMCCHKKRMKDGML 389 (441)
Q Consensus 366 p~~--~t~~~li~~~~~~g~~~~a~~ 389 (441)
||. ..|..+|.-=+.-|++..+.+
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~ 493 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILK 493 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 544 467777777677777776655
No 166
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.77 E-value=0.71 Score=46.28 Aligned_cols=202 Identities=12% Similarity=0.050 Sum_probs=119.9
Q ss_pred chhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccH
Q 036107 87 HETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL 166 (441)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~ 166 (441)
++-+. .++..|.-....+|++..+.+.|+.. .++.--....|+.+-..+.-.|.-..|..+++.-....+.+.
T Consensus 319 ~qnd~-ai~d~Lt~al~~~g~f~~lae~fE~~----~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps-- 391 (799)
T KOG4162|consen 319 FQNDA-AIFDHLTFALSRCGQFEVLAEQFEQA----LPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS-- 391 (799)
T ss_pred hcchH-HHHHHHHHHHHHHHHHHHHHHHHHHH----hHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC--
Confidence 44343 67788877888889999988888522 223333556788888888888888888888887655442221
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHh-cCCHHHHHHHHHHhh-------hCCCCcHHHHHHHHHHHHhc-----------CC
Q 036107 167 AAMSTVMRRLDTRAMSVLMDTLVK-RNSVAHAYKVFLKFK-------DCISLSSQIFDVLIHGWCKT-----------RK 227 (441)
Q Consensus 167 ~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~-------~~~~~~~~~~~~li~~~~~~-----------~~ 227 (441)
|+..+-..-..|.+ .+..++++.+-.+.- +.+.|- .|-.+--+|... ..
T Consensus 392 ----------~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~ 459 (799)
T KOG4162|consen 392 ----------DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDAL 459 (799)
T ss_pred ----------cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHH
Confidence 33333333333332 356666655554431 122232 333333333321 12
Q ss_pred HHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036107 228 SDYAQKAMKEMFQHG-FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306 (441)
Q Consensus 228 ~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 306 (441)
..++++.+++..+.+ -.|++.-|-++= |+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 446667777776542 334443333332 45566788888888887777555677777777777777777777777766
Q ss_pred HHh
Q 036107 307 KMK 309 (441)
Q Consensus 307 ~m~ 309 (441)
...
T Consensus 538 ~al 540 (799)
T KOG4162|consen 538 AAL 540 (799)
T ss_pred HHH
Confidence 543
No 167
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.75 E-value=0.017 Score=50.38 Aligned_cols=105 Identities=13% Similarity=0.147 Sum_probs=63.7
Q ss_pred CCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 036107 245 PDGVSYTCFIEHYCRE-----KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF 319 (441)
Q Consensus 245 p~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 319 (441)
.|-.+|-+.+..+... +.++-....++.|.+-|+.-|..+|+.||+.+=+ ..+.|.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK----------------gkfiP~--- 125 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK----------------GKFIPQ--- 125 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc----------------cccccH---
Confidence 4555555555555432 3455555555556666666566666555543322 112221
Q ss_pred HHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 036107 320 YSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384 (441)
Q Consensus 320 ~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 384 (441)
..+..+.-.|-+.. +-+++++++|...|+.||..+-..|+.++.+.+-.
T Consensus 126 --------------nvfQ~~F~HYP~QQ--~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 126 --------------NVFQKVFLHYPQQQ--NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred --------------HHHHHHHhhCchhh--hHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 11333333333332 45899999999999999999999999999887764
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.75 E-value=0.0065 Score=41.57 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=34.6
Q ss_pred hcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 036107 190 KRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253 (441)
Q Consensus 190 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 253 (441)
+.|++++|+++|+.+-...+-+...+-.+..+|.+.|++++|.++++++... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 4566666666666654433445555556666666666666666666666553 3443344333
No 169
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.75 E-value=0.031 Score=43.53 Aligned_cols=100 Identities=7% Similarity=-0.046 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHH
Q 036107 281 SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360 (441)
Q Consensus 281 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 360 (441)
|..++.++|.++++.|+++....+.+..- |+.++... ..+. --.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~-------------------------~~~~---------~~~ 44 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK-------------------------KEGD---------YPP 44 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc-------------------------ccCc---------cCC
Confidence 45677777777888888777777775443 22222110 0000 112
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036107 361 EDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK 418 (441)
Q Consensus 361 ~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 418 (441)
.....|+..+..+++.+|+..|++..|.++.+.+.+ ..++..+..+|..|++-...
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~--~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR--KYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHH
Confidence 344678888888888888888888888776666655 45677777788888776643
No 170
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.66 E-value=0.6 Score=43.95 Aligned_cols=149 Identities=12% Similarity=0.097 Sum_probs=87.6
Q ss_pred HhhhhchhhHHHHHhhhcCchhhH----HHHHHHHHhcCCChHHHHHHHhhhh--hHhhhhcCCCCCCHHHHHHHHHHHH
Q 036107 68 ESLKLNEQSRISSHALSEDHETDV----DKVSEILRKRYPSPDKVVEALKCFC--FTWAKTQTGYMHTPETYNAMVEALG 141 (441)
Q Consensus 68 ~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~g~~p~~~~y~~li~~~~ 141 (441)
+.++++++..|+..+.+....... +.+.+.++.+|-..+ ++.+. .+...++.|-.|-...+..+. +-
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-----ld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y 90 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-----LDLMEKQLMELRQQFGKSAYLPLFKALV--AY 90 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-----HHHHHHHHHHHHHhcCCchHHHHHHHHH--HH
Confidence 457789999999888765433322 223344444443322 22221 112233444333333333332 34
Q ss_pred cCCChhHHHHHHHHHHHh--cCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCcHHH
Q 036107 142 KSKKFGLMWELVKEIDEL--SNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-----CISLSSQI 214 (441)
Q Consensus 142 ~~~~~~~a~~l~~~m~~~--~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 214 (441)
+.++++.|.+.+....+. +...+..++-... .-.|..--+...+++...|++.++..+.+++.. ....+..+
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~-l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ-LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHH-HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 678999999999888775 3222222221111 111444557788899999999999999998833 45589999
Q ss_pred HHHHHHHHHh
Q 036107 215 FDVLIHGWCK 224 (441)
Q Consensus 215 ~~~li~~~~~ 224 (441)
||.++-.+++
T Consensus 170 yd~~vlmlsr 179 (549)
T PF07079_consen 170 YDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHhH
Confidence 9997766655
No 171
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.64 E-value=0.61 Score=43.88 Aligned_cols=244 Identities=14% Similarity=0.109 Sum_probs=139.7
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH--HHh
Q 036107 188 LVKRNSVAHAYKVFLKFKDCISLS------SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH--YCR 259 (441)
Q Consensus 188 ~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~ 259 (441)
+-+.+++.+|.++|.++-+....+ ...-+.+|++|... +++.....+.+..+. .| ...|-.+..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 346799999999999984322222 33455677888765 566666666666653 23 3334444443 346
Q ss_pred cCCHHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC----CCCHHHHH
Q 036107 260 EKDFRKVDYTLKEMQEK--GCKP------------SVITCTIVMHALEKAKQIYEALKVYEKMKSDDC----LTDTSFYS 321 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~--g~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~----~~~~~~~~ 321 (441)
.+++++|.+.+..-.++ +..| |..-=+..++++.+.|++.+++.++++|...=+ .-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78899999888766544 3222 222335677889999999999999999876533 36888999
Q ss_pred HHHHHHHhcCcc-----------chHHHHHHHHHhcCChhH---------HHHHHHH----------------------H
Q 036107 322 SLIFILSKAVRF-----------LIYNTMISSACVRSEEGN---------ALKLRQK----------------------I 359 (441)
Q Consensus 322 ~li~~~~~~g~~-----------~~~~~li~~~~~~g~~~~---------a~~~~~~----------------------m 359 (441)
.++-+++++--. .-|--||..|.+.=+.-+ +.+++.. -
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 988777776322 334444444443311111 1122211 1
Q ss_pred HHcCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107 360 EEDSCKPDCE-THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV-PQESTHKMLAEELEKKSLGNAKERIDELLTHATE 437 (441)
Q Consensus 360 ~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 437 (441)
...-+.|+.. ....++..+.+ +.+++..+.+.+....-..++ -=..++..++....+.++..+|...+..++-...
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 2223445433 22233333333 333443333222221100000 0124678888888888888888888887765543
No 172
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.60 E-value=0.87 Score=45.20 Aligned_cols=212 Identities=9% Similarity=0.008 Sum_probs=107.4
Q ss_pred hchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 036107 72 LNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWE 151 (441)
Q Consensus 72 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~ 151 (441)
++-...+++.+...+..|+-..+.+..++......++.++..+=+.. .-..-.|.+..|..+-..-...-.++-|..
T Consensus 637 LeitsVlld~Il~~pE~pnk~~ii~~~ikslrD~~~Lve~vgledA~---qfiEdnPHprLWrllAe~Al~Kl~l~tAE~ 713 (1189)
T KOG2041|consen 637 LEITSVLLDKILLTPENPNKTCIIEVMIKSLRDVMNLVEAVGLEDAI---QFIEDNPHPRLWRLLAEYALFKLALDTAEH 713 (1189)
T ss_pred eEEEEEEHhhHhcCcCCCCcceEEEEEehhhhhHHHHHHHhchHHHH---HHHhcCCchHHHHHHHHHHHHHHhhhhHhh
Confidence 33444455556665555554333343443333333333333221100 000112667777777666666566666666
Q ss_pred HHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHH
Q 036107 152 LVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYA 231 (441)
Q Consensus 152 l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 231 (441)
.|-+... ++....+..+-.-.+.+.-.+=+.+| -|.+|+|+++|-.+.. -..-|..+.+.|++-.+
T Consensus 714 AFVrc~d----Y~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~dr--------rDLAielr~klgDwfrV 779 (1189)
T KOG2041|consen 714 AFVRCGD----YAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADR--------RDLAIELRKKLGDWFRV 779 (1189)
T ss_pred hhhhhcc----ccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccch--------hhhhHHHHHhhhhHHHH
Confidence 6655432 12221111111111222222223322 4888888888876632 23356667777777777
Q ss_pred HHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 232 QKAMKEMFQHGFS--PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309 (441)
Q Consensus 232 ~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 309 (441)
.++++.=- .+.. .-...|+.+-..++....|++|.+.+..-... ...+.++.+..++++-+.+-..+.
T Consensus 780 ~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lp 849 (1189)
T KOG2041|consen 780 YQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLP 849 (1189)
T ss_pred HHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcC
Confidence 66664311 1110 11346777777777777777777777653221 345666666666666666655554
Q ss_pred h
Q 036107 310 S 310 (441)
Q Consensus 310 ~ 310 (441)
+
T Consensus 850 e 850 (1189)
T KOG2041|consen 850 E 850 (1189)
T ss_pred c
Confidence 4
No 173
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.58 E-value=0.4 Score=42.34 Aligned_cols=54 Identities=6% Similarity=-0.075 Sum_probs=30.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 036107 339 MISSACVRSEEGNALKLRQKIEED--SCKPDCETHARSLKMCCHKKRMKDGMLVLN 392 (441)
Q Consensus 339 li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 392 (441)
+..-|.+.|.+..|+.-++.+.+. +..........++.+|.+.|..++|.++..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 334456666666666666666542 333344455556666666666666655443
No 174
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.53 E-value=0.73 Score=46.18 Aligned_cols=128 Identities=13% Similarity=0.032 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHH
Q 036107 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYC 258 (441)
Q Consensus 180 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~ 258 (441)
.|...-..+.+.+..++|.....+.....+.....|...-..+...|.+++|.+.|..-.. +.|+ +.+.+++-..+.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH
Confidence 3445556667777778887777776665666777777777777888889999988887765 3454 467788888888
Q ss_pred hcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 259 REKDFRKVDY--TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 259 ~~g~~~~a~~--l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
+.|+..-|.. ++.++.+.+. .+...|-.+-..+-+.|+.+.|-+.|....+
T Consensus 730 e~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 8888777777 8888888754 3778888999999999999999999987655
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.51 E-value=0.014 Score=39.90 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=30.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 259 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
+.|++++|.++|+++.+.... +...+..+..+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456666666666666554322 4555555666666666666666666666554
No 176
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.50 E-value=0.072 Score=50.10 Aligned_cols=101 Identities=9% Similarity=0.038 Sum_probs=81.0
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 036107 186 DTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265 (441)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 265 (441)
..+...|+++.|++.|++.-...+-+...|..+-.+|.+.|++++|+..+++..+.. +.+...|..+-.+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 455678999999999999865556677888889999999999999999999998753 2256788888899999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH
Q 036107 266 VDYTLKEMQEKGCKPSVITCTIVM 289 (441)
Q Consensus 266 a~~l~~~m~~~g~~p~~~~~~~ll 289 (441)
|...|++..+.. |+.......+
T Consensus 89 A~~~~~~al~l~--P~~~~~~~~l 110 (356)
T PLN03088 89 AKAALEKGASLA--PGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHH
Confidence 999999988753 4444444333
No 177
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.49 E-value=0.69 Score=42.60 Aligned_cols=84 Identities=23% Similarity=0.139 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293 (441)
Q Consensus 214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 293 (441)
+.+..|.-+...|+...|.++-.+..- ||..-|-..|.+++..++|++..++... . -+++.|-..+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv----~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKV----PDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHH
Confidence 455567777888999999998887753 8999999999999999999988876442 1 24588999999999
Q ss_pred hcCCHHHHHHHHHH
Q 036107 294 KAKQIYEALKVYEK 307 (441)
Q Consensus 294 ~~~~~~~a~~~~~~ 307 (441)
+.|+..+|..+...
T Consensus 249 ~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 249 KYGNKKEASKYIPK 262 (319)
T ss_pred HCCCHHHHHHHHHh
Confidence 99999999888877
No 178
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.35 E-value=0.39 Score=38.28 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=17.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 036107 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR 259 (441)
Q Consensus 218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 259 (441)
+|..+...+.......+++.+...|. .+...+|.+|..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 33444444444444444444443331 333344444444443
No 179
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.35 E-value=0.84 Score=42.06 Aligned_cols=105 Identities=16% Similarity=0.115 Sum_probs=58.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 036107 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS 328 (441)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (441)
+.+..|.-+...|+...|.++-++. .+ |+..-|-..+.+++..+++++-.++... .-.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKsP------------- 237 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS----KKSP------------- 237 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCCC-------------
Confidence 4444555556666666665554444 22 5666666666666666666666554332 1122
Q ss_pred hcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 036107 329 KAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389 (441)
Q Consensus 329 ~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 389 (441)
..|-.++..|.+.|+..+|..+..++ ++..-+..|.+.|++.+|.+
T Consensus 238 -----IGyepFv~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~ 283 (319)
T PF04840_consen 238 -----IGYEPFVEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQ 283 (319)
T ss_pred -----CChHHHHHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHH
Confidence 22666666666666666666665551 12344556666666666644
No 180
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.35 E-value=0.029 Score=49.01 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=77.9
Q ss_pred CCcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC----------------CHHHHH
Q 036107 209 SLSSQIFDVLIHGWCK-----TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK----------------DFRKVD 267 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------~~~~a~ 267 (441)
..|..+|-+.+..|.. .+.++-....++.|.+.|+..|..+|+.||+.+-+.. +-+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3455667777766654 3667888888899999999999999999999876533 224589
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhh
Q 036107 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIY-EALKVYEKMKS 310 (441)
Q Consensus 268 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~m~~ 310 (441)
+++++|...|+.||..+-..|++++.+.+-.- +..++.-.|.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 99999999999999999999999998887643 34444444443
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.32 E-value=0.39 Score=47.51 Aligned_cols=137 Identities=14% Similarity=0.089 Sum_probs=76.9
Q ss_pred CCCCCCHHHHHHHHHHHHcCC-----ChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhc-------
Q 036107 124 TGYMHTPETYNAMVEALGKSK-----KFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR------- 191 (441)
Q Consensus 124 ~g~~p~~~~y~~li~~~~~~~-----~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~------- 191 (441)
.+...+...|...+.+..... +...|.++|++..+..|... ..+..+..++...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a--------------~a~A~la~~~~~~~~~~~~~ 396 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT--------------YAQAEKALADIVRHSQQPLD 396 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH--------------HHHHHHHHHHHHHHhcCCcc
Confidence 455568899999999865433 36789999999999775532 3333322222111
Q ss_pred -CCHHHHHHHHHHhhh--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 036107 192 -NSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDY 268 (441)
Q Consensus 192 -g~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 268 (441)
.+.+.+.+....... ....+...|.++--.+...|++++|...+++....+ |+...|..+-..+...|+.++|.+
T Consensus 397 ~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 397 EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 112222222222111 123334455555444445566666666666666543 566666666666666666666666
Q ss_pred HHHHHHHc
Q 036107 269 TLKEMQEK 276 (441)
Q Consensus 269 l~~~m~~~ 276 (441)
.+++....
T Consensus 475 ~~~~A~~L 482 (517)
T PRK10153 475 AYSTAFNL 482 (517)
T ss_pred HHHHHHhc
Confidence 66665443
No 182
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.29 E-value=0.82 Score=41.39 Aligned_cols=225 Identities=12% Similarity=0.059 Sum_probs=127.2
Q ss_pred HHhcCCHHHHHHHHHHhhh---CCCCcHH------HHHHHHHHHHhcCCHHHHHHHHHHHhhC--------CCCCC----
Q 036107 188 LVKRNSVAHAYKVFLKFKD---CISLSSQ------IFDVLIHGWCKTRKSDYAQKAMKEMFQH--------GFSPD---- 246 (441)
Q Consensus 188 ~~~~g~~~~a~~~~~~~~~---~~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~--------g~~p~---- 246 (441)
..+.|+++.|..++.+.+. ...|+.. .||.-...+.+..+++.|..++++-.+. ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 3567999999999998854 2344332 3454445555443777777666554321 12233
Q ss_pred -HhhHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 036107 247 -GVSYTCFIEHYCREKDF---RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322 (441)
Q Consensus 247 -~~~~~~li~~~~~~g~~---~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 322 (441)
..++..++.+|...+.. ++|..+++.+...... ....|..-++.+.+.++.+++.+++.+|...-..++..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~---- 157 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESN---- 157 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccch----
Confidence 34677788888887764 4566677777554322 24555566777777999999999999999864323322
Q ss_pred HHHHHHhcCccchHHHHHHHH---HhcCChhHHHHHHHHHHHcCCCCCHH-HHHHH----HHHHHhcCChhh---HHHHH
Q 036107 323 LIFILSKAVRFLIYNTMISSA---CVRSEEGNALKLRQKIEEDSCKPDCE-THARS----LKMCCHKKRMKD---GMLVL 391 (441)
Q Consensus 323 li~~~~~~g~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~l----i~~~~~~g~~~~---a~~~~ 391 (441)
+..++..+ ... ....|...+..+....+.|... -...+ +-...+.++... ++.+-
T Consensus 158 -------------~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~ 223 (278)
T PF08631_consen 158 -------------FDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLE 223 (278)
T ss_pred -------------HHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHH
Confidence 44444444 222 2356777777776655565553 11111 112222222111 22222
Q ss_pred HHHHHHHH-CCCCCCHHHHHHHHHH-------HHhcCCccHHHHHHHH
Q 036107 392 NLMREMLS-KGIVPQESTHKMLAEE-------LEKKSLGNAKERIDEL 431 (441)
Q Consensus 392 ~~~~~m~~-~~~~p~~~~~~~ll~~-------~~~~g~~~~a~~~~~~ 431 (441)
+++....+ .+.+.+..+-.++... +.+++++++|.++++.
T Consensus 224 ~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 224 ELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 23332222 2344444444444333 4567899999999884
No 183
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=1.1 Score=42.96 Aligned_cols=240 Identities=15% Similarity=0.049 Sum_probs=139.3
Q ss_pred hHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCC-HHHHHHHHHHHHcC
Q 036107 65 SWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHT-PETYNAMVEALGKS 143 (441)
Q Consensus 65 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~-~~~y~~li~~~~~~ 143 (441)
++...|+++.+...+.....-. |....+++-=..+|++.|++.+|++ .......+.|+ +..|+..-.++.-.
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~-----da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALK-----DATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHH-----HHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 4456677888877777666554 4443455555678999999999986 33445567788 46899999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHH------HHhhh----CCCCcHH
Q 036107 144 KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF------LKFKD----CISLSSQ 213 (441)
Q Consensus 144 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~------~~~~~----~~~~~~~ 213 (441)
|++++|+..|.+-.+..+. +...++-+..++.... .+-+.| ..+.. .......
T Consensus 84 g~~~eA~~ay~~GL~~d~~--------------n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~ 146 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPS--------------NKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDP 146 (539)
T ss_pred ccHHHHHHHHHHHhhcCCc--------------hHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccH
Confidence 9999999999998775422 5666777777661110 111112 11110 1112222
Q ss_pred HHHHHHHHHHhcC-------CHHHHHHHHHHHh--------hCCC-------CC---------C-------------Hhh
Q 036107 214 IFDVLIHGWCKTR-------KSDYAQKAMKEMF--------QHGF-------SP---------D-------------GVS 249 (441)
Q Consensus 214 ~~~~li~~~~~~~-------~~~~a~~~~~~m~--------~~g~-------~p---------~-------------~~~ 249 (441)
.|..++..+-+.. +.....+..-.+. ..|+ .| . ..-
T Consensus 147 ~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ 226 (539)
T KOG0548|consen 147 AYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHK 226 (539)
T ss_pred HHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhH
Confidence 3444444432221 1111111111111 1111 11 0 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 036107 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329 (441)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (441)
...+.++..+..++..|.+-+....+.. -+..-++..-.+|...|.+..+...-..-.+.|.. ...-|+.+-.++++
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4456777777888888888888887765 35555566667788888888887777766665532 22334444444444
Q ss_pred cC
Q 036107 330 AV 331 (441)
Q Consensus 330 ~g 331 (441)
.|
T Consensus 304 ~g 305 (539)
T KOG0548|consen 304 LG 305 (539)
T ss_pred hh
Confidence 33
No 184
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.27 E-value=1.1 Score=44.58 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036107 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292 (441)
Q Consensus 213 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~ 292 (441)
..|+.+-..++....|++|.+.|..-.. . ...+.++.+..++++.+.+-+.+.+ |....-.+.+++
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf 862 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHH
Confidence 3466666666666666666666654321 1 2344555555555554444444322 333444555666
Q ss_pred HhcCCHHHHHHHHH
Q 036107 293 EKAKQIYEALKVYE 306 (441)
Q Consensus 293 ~~~~~~~~a~~~~~ 306 (441)
...|.-++|.+.|-
T Consensus 863 ~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAYL 876 (1189)
T ss_pred HhhchHHHHHHHHH
Confidence 66666666655443
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.27 E-value=0.027 Score=38.02 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=24.5
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239 (441)
Q Consensus 187 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 239 (441)
.+.+.|++++|.+.|+.+....+-+...+..+-.++...|++++|..+|++..
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444555555555554433333344444444444555555555555554443
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.27 E-value=0.54 Score=42.67 Aligned_cols=153 Identities=8% Similarity=-0.032 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc--
Q 036107 262 DFRKVDYTLKEMQE----KGCKPS-VITCTIVMHALEKA-KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF-- 333 (441)
Q Consensus 262 ~~~~a~~l~~~m~~----~g~~p~-~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-- 333 (441)
++++|...+++..+ .|-... ..++..+-..|... |++++|.+.|++..+. |...|..
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~---------------y~~e~~~~~ 153 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL---------------YEQEGSPHS 153 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH---------------HHHTT-HHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHCCChhh
Confidence 55555555554432 121111 23444445555565 7788888777766542 1111111
Q ss_pred --chHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----CCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHC--CCC
Q 036107 334 --LIYNTMISSACVRSEEGNALKLRQKIEEDSC-----KPDCE-THARSLKMCCHKKRMKDGMLVLNLMREMLSK--GIV 403 (441)
Q Consensus 334 --~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~-t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~--~~~ 403 (441)
.++..+...+.+.|++++|+++|++....-. +++.. .|...+-++...|+...|.+ .+.+.... ++.
T Consensus 154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~---~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARK---ALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHH---HHHHHGTTSTTST
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHhhCCCCC
Confidence 3477788889999999999999999875432 22222 23333445556788888877 44444322 343
Q ss_pred CC--HHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 036107 404 PQ--ESTHKMLAEELEKKSLGNAKERIDELLT 433 (441)
Q Consensus 404 p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 433 (441)
.+ ......|++++ +.|+.+...+......
T Consensus 231 ~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 231 SSREYKFLEDLLEAY-EEGDVEAFTEAVAEYD 261 (282)
T ss_dssp TSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHT
T ss_pred CcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHc
Confidence 33 33555556555 4455555444444433
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.23 E-value=0.78 Score=40.53 Aligned_cols=196 Identities=9% Similarity=0.055 Sum_probs=105.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh-hH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV-SY---TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293 (441)
Q Consensus 218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~---~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 293 (441)
....+.+.|++++|.+.|+++...- |+.. .- -.+..++.+.+++++|...+++..+....-...-|...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 3444566788888888888887642 3322 21 2455677788888888888888876532222334444444444
Q ss_pred hcCCHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 036107 294 KAKQIYEALKVYEKMKS-DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHA 372 (441)
Q Consensus 294 ~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 372 (441)
.... ....|..... ....-|...-...+ ..+..+|.-|-...-..+|...+..+.+. .-..- -
T Consensus 116 ~~~~---~~~~~~~~~~~~~~~rD~~~~~~A~---------~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e-~ 179 (243)
T PRK10866 116 NMAL---DDSALQGFFGVDRSDRDPQHARAAF---------RDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKYE-L 179 (243)
T ss_pred hhhc---chhhhhhccCCCccccCHHHHHHHH---------HHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHHH-H
Confidence 2100 0000000000 00000000000000 11333444444444445565544444321 01111 2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 036107 373 RSLKMCCHKKRMKDGMLVLNLMREMLSK--GIVPQESTHKMLAEELEKKSLGNAKERIDELLTH 434 (441)
Q Consensus 373 ~li~~~~~~g~~~~a~~~~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 434 (441)
.+.+-|.+.|.+.-|.. .++.+.+. +.+........+..+|.+.|..++|.++...+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~---r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVN---RVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHH---HHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 45667888899888754 66666653 5556666888899999999999999998876643
No 188
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.17 E-value=1.1 Score=41.53 Aligned_cols=267 Identities=12% Similarity=0.076 Sum_probs=171.2
Q ss_pred CCHHHHHHHHHHHH--cCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHH----HHHHHHHHhcCCHHHHHHHH
Q 036107 128 HTPETYNAMVEALG--KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM----SVLMDTLVKRNSVAHAYKVF 201 (441)
Q Consensus 128 p~~~~y~~li~~~~--~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~a~~~~ 201 (441)
-|..-.-.++.+-. -.|+++.|.+-|+.|.. |+++- ..|.-..-+.|..+-|...-
T Consensus 116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~------------------dPEtRllGLRgLyleAqr~GareaAr~yA 177 (531)
T COG3898 116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD------------------DPETRLLGLRGLYLEAQRLGAREAARHYA 177 (531)
T ss_pred ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc------------------ChHHHHHhHHHHHHHHHhcccHHHHHHHH
Confidence 34444444444333 35899999999999987 33333 33344445678888888877
Q ss_pred HHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHh--hHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 036107 202 LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH-GFSPDGV--SYTCFIEHYCR---EKDFRKVDYTLKEMQE 275 (441)
Q Consensus 202 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~--~~~~li~~~~~---~g~~~~a~~l~~~m~~ 275 (441)
+..-..-+--...+.+.+...+..|+|+.|+++.+.-++. -+.+++. .-..|+.+-.. .-+...|...-.+-.
T Consensus 178 e~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~- 256 (531)
T COG3898 178 ERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN- 256 (531)
T ss_pred HHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh-
Confidence 7764444455667888999999999999999999887653 3445542 22233333221 223445555444433
Q ss_pred cCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHH
Q 036107 276 KGCKPSVITC-TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354 (441)
Q Consensus 276 ~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~ 354 (441)
.+.||..-- ..--.++.+.|+..++-.+++.+-+..-.|+.. .+-.+.+.| +.++.
T Consensus 257 -KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--------------------~lY~~ar~g--dta~d 313 (531)
T COG3898 257 -KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--------------------LLYVRARSG--DTALD 313 (531)
T ss_pred -hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--------------------HHHHHhcCC--CcHHH
Confidence 345554332 233467889999999999999999887677542 112233444 45666
Q ss_pred HHHHHHH-cCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCccHHHHHHHH
Q 036107 355 LRQKIEE-DSCKPDC-ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE-KKSLGNAKERIDEL 431 (441)
Q Consensus 355 ~~~~m~~-~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~ 431 (441)
-+++.+. ..++||. ..-..+..+-...|++..|..--+...+ ..|....|..|.+.-. ..|+-.++..++..
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-----~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-----EAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-----hCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 6665543 2346654 4556667777788998888764444444 6789999998888775 45999999888877
Q ss_pred HHHHhhhcCC
Q 036107 432 LTHATEQRTF 441 (441)
Q Consensus 432 m~~~~~~~~~ 441 (441)
-.+.++.+-|
T Consensus 389 av~APrdPaW 398 (531)
T COG3898 389 AVKAPRDPAW 398 (531)
T ss_pred HhcCCCCCcc
Confidence 6666655443
No 189
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.16 E-value=0.15 Score=41.04 Aligned_cols=88 Identities=7% Similarity=-0.039 Sum_probs=57.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 036107 220 HGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298 (441)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 298 (441)
.-+...|++++|.++|+.+... .| +..-|-.|-.++-..|++.+|+..|........ -|...+-.+-.++...|+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 3445667777777777777653 23 334445555566667777777777777766653 3566677777777777777
Q ss_pred HHHHHHHHHHhh
Q 036107 299 YEALKVYEKMKS 310 (441)
Q Consensus 299 ~~a~~~~~~m~~ 310 (441)
+.|++.|+....
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 777777776655
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.11 E-value=0.25 Score=38.12 Aligned_cols=105 Identities=13% Similarity=0.016 Sum_probs=56.2
Q ss_pred HHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC---cHHHH
Q 036107 139 ALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL---SSQIF 215 (441)
Q Consensus 139 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~ 215 (441)
++-..|+.++|+.++++....|...+. -...+-.+-+.+...|++++|+.+++......+- +....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-----------~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGAD-----------RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence 445567777777777777664411110 1234445666666777777777777665332211 22222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258 (441)
Q Consensus 216 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 258 (441)
..+--++...|+.++|.+++-.... ++...|.--|..|+
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 2223355666777777776655543 34445555555444
No 191
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.10 E-value=0.54 Score=46.52 Aligned_cols=134 Identities=6% Similarity=-0.067 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcC--------CHHHHHHHHHHHhhC-C
Q 036107 177 DTRAMSVLMDTLVKR-----NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR--------KSDYAQKAMKEMFQH-G 242 (441)
Q Consensus 177 ~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~-g 242 (441)
+...|...+.+.... +..+.|.++|++.-..-+-....|..+..++.... ++..+.+..++.... .
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~ 415 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE 415 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc
Confidence 778899988886543 33778999998875433444555555544443221 233444444443332 2
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312 (441)
Q Consensus 243 ~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 312 (441)
...+...|.++--.....|++++|...+++..+.+ |+...|..+-..+...|+.++|.+.+++....+
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 33455677777666667899999999999998865 688899999999999999999999999987753
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.00 E-value=0.38 Score=37.14 Aligned_cols=52 Identities=12% Similarity=-0.007 Sum_probs=23.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 259 REKDFRKVDYTLKEMQEKGCKPS--VITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 259 ~~g~~~~a~~l~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
..|+.++|..+|++-.+.|.... ...+..+-.++...|++++|..++++...
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555444443322 12233333444444555555555544443
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.93 E-value=0.048 Score=36.79 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=24.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 309 (441)
+.+.|++++|.+.|++..+.. +-+...+..+-.++.+.|++++|...|++..
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444455555555555554443 1134444444444555555555555555444
No 194
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.93 E-value=0.69 Score=37.30 Aligned_cols=92 Identities=14% Similarity=-0.060 Sum_probs=66.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH
Q 036107 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 263 (441)
+-.-+...|++++|..+|+.+-.--+.+..-|-.|--++-..|++++|...|........ -|+..+-.+-.++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 334456678888888888877443345555677777777778888888888888877553 3567777777788888888
Q ss_pred HHHHHHHHHHHHc
Q 036107 264 RKVDYTLKEMQEK 276 (441)
Q Consensus 264 ~~a~~l~~~m~~~ 276 (441)
+.|.+.|+.....
T Consensus 120 ~~A~~aF~~Ai~~ 132 (157)
T PRK15363 120 CYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888876554
No 195
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.88 E-value=1.3 Score=40.07 Aligned_cols=210 Identities=10% Similarity=0.097 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHh----c---CCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHH---HHHH
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDEL----S---NGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAH---AYKV 200 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~----~---~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~ 200 (441)
..||.-...+.+..+++.|...+++..+. + ...+.. ...-..+...++.+|...+..+. |..+
T Consensus 37 ~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~-------~elr~~iL~~La~~~l~~~~~~~~~ka~~~ 109 (278)
T PF08631_consen 37 VCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDG-------SELRLSILRLLANAYLEWDTYESVEKALNA 109 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcH-------HHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 45666666666655777777666665543 1 111111 11134677888888888887764 4555
Q ss_pred HHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH---HhcCCHHHHHHHHHHHHHcC
Q 036107 201 FLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY---CREKDFRKVDYTLKEMQEKG 277 (441)
Q Consensus 201 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~a~~l~~~m~~~g 277 (441)
.+.+.+...-...++-.-|..+.+.++.+.+.+++.+|... +.-....+..+++.+ ... ....|...+..+....
T Consensus 110 l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r 187 (278)
T PF08631_consen 110 LRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNR 187 (278)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHH
Confidence 55565444434555666677777799999999999999975 222345566666655 333 3456777777766555
Q ss_pred CCCCHH-HH-HHHHHH---HHhcC------CHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHh
Q 036107 278 CKPSVI-TC-TIVMHA---LEKAK------QIYEALKVYEKMKS-DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345 (441)
Q Consensus 278 ~~p~~~-~~-~~ll~~---~~~~~------~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~ 345 (441)
+.|... .. ..++.- ..+.+ +++...++++...+ .+.+.+..+-.++...+ ||. ...+.+
T Consensus 188 ~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LL--------W~~-~~~~~~ 258 (278)
T PF08631_consen 188 FKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLL--------WNK-GKKHYK 258 (278)
T ss_pred hCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--------HHH-HHHHHh
Confidence 555543 11 111111 11111 24555566664443 44455666655555443 444 334567
Q ss_pred cCChhHHHHHHHH
Q 036107 346 RSEEGNALKLRQK 358 (441)
Q Consensus 346 ~g~~~~a~~~~~~ 358 (441)
.+++++|.+.|+-
T Consensus 259 ~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 259 AKNYDEAIEWYEL 271 (278)
T ss_pred hcCHHHHHHHHHH
Confidence 8899999998874
No 196
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.76 E-value=0.68 Score=35.87 Aligned_cols=134 Identities=12% Similarity=0.101 Sum_probs=71.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH---HHHHHHHHHHhcCcc-ch
Q 036107 260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS---FYSSLIFILSKAVRF-LI 335 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~-~~ 335 (441)
.|..++..++..+.... .+..-||.+|--....-+-+- +|+.+..-|--.|.. -...++..|.+.|.. ..
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~y---vv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDY---VVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEY 88 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHH---HHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HH
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhH---HHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHH
Confidence 45556666666655443 233344444433332222222 233332222222222 123345555555544 33
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCC
Q 036107 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403 (441)
Q Consensus 336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~ 403 (441)
....+......|+-+.-.+++.++.. .-+|++...-.+-.+|.+.|+..++.+ ++.+..++|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~e---ll~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANE---LLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHH---HHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHH---HHHHHHHhchH
Confidence 56667888888888888888888765 337888888889999999999988866 77777777764
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.33 Score=42.28 Aligned_cols=144 Identities=10% Similarity=0.031 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---
Q 036107 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH--- 290 (441)
Q Consensus 214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~--- 290 (441)
+.+.++..+.-.|.+.-...++.+.++..-+.++.....+.+.-.+.||.+.|...|++..+..-+.|..+++.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45566677777788888899999999877677888888999999999999999999998877655566666665543
Q ss_pred --HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 036107 291 --ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368 (441)
Q Consensus 291 --~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 368 (441)
.|.-.+++..|...|.+..+.+-. |... -|.=.-+..-.|+..+|++.++.|++. .|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a----------------~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVA----------------NNNKALCLLYLGKLKDALKQLEAMVQQ--DPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhh----------------hchHHHHHHHHHHHHHHHHHHHHHhcc--CCcc
Confidence 345567888888888888765321 1111 233233334467889999999999865 5666
Q ss_pred HHHHHHHH
Q 036107 369 ETHARSLK 376 (441)
Q Consensus 369 ~t~~~li~ 376 (441)
.+-++++-
T Consensus 320 ~l~es~~~ 327 (366)
T KOG2796|consen 320 YLHESVLF 327 (366)
T ss_pred chhhhHHH
Confidence 65554443
No 198
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.72 E-value=0.6 Score=48.24 Aligned_cols=162 Identities=10% Similarity=0.019 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL 210 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 210 (441)
..|..|-..|+...+...|...|...-+.++. |......+.+.|++..+++.|.++.-...+.-+.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat--------------daeaaaa~adtyae~~~we~a~~I~l~~~qka~a 558 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT--------------DAEAAAASADTYAEESTWEEAFEICLRAAQKAPA 558 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--------------hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH
Confidence 46777777777777777788888877775522 6788888889999999999998884333221111
Q ss_pred cHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107 211 SSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288 (441)
Q Consensus 211 ~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 288 (441)
-... |-..--.|.+.++...|..-|+.-.+... -|...|..+..+|.+.|.+..|.++|.+.... .|+ .+|...
T Consensus 559 ~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~f 634 (1238)
T KOG1127|consen 559 FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRF 634 (1238)
T ss_pred HHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHH
Confidence 1112 22233456677888888888888776432 36788889999999999999999999887663 343 233332
Q ss_pred HH--HHHhcCCHHHHHHHHHHHhh
Q 036107 289 MH--ALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 289 l~--~~~~~~~~~~a~~~~~~m~~ 310 (441)
-. .-+..|.+.++...+.....
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22 24567888888888877644
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.72 E-value=0.24 Score=44.20 Aligned_cols=98 Identities=11% Similarity=0.068 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHH
Q 036107 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG----VSYTCFIEHYCREKDFRKVDYTLKEMQEKG--CKPSVITC 285 (441)
Q Consensus 212 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~~~ 285 (441)
...|...+..+.+.|++++|...|+.+.+.- |+. ..+-.+-..|...|++++|...|+.+.+.- -+.....+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 3446666666667788999988888888642 443 466777888888899999999999887642 11123445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 286 TIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 286 ~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
-.+...+...|+.++|..+|+...+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55566677889999999999888775
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.69 E-value=0.25 Score=44.08 Aligned_cols=99 Identities=9% Similarity=-0.026 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL 210 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 210 (441)
..|...+..+.+.|++++|...|+.+.+.-|..+ ..+.++-.+-..|...|++++|...|..+-...+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~-----------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~ 212 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST-----------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK 212 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc-----------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 3555555555556677777777777666432211 12345555666666666666666666666332222
Q ss_pred c---HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 211 S---SQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 211 ~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
+ ...+-.+...+...|+.++|.++|++..+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 22222334445556666666666666654
No 201
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.63 E-value=0.67 Score=43.59 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCCHHHH-HHH
Q 036107 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG-FSPDGVSYTCFIEHYCREKDFRKVDYTLKE-MQEKGCKPSVITC-TIV 288 (441)
Q Consensus 212 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~l~~~-m~~~g~~p~~~~~-~~l 288 (441)
..+|...|+.-.+...++.|..+|-+.++.| +.+++..++++|..++. |+..-|..+|+- |+.. ||...| +-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f---~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF---PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC---CCchHHHHHH
Confidence 4468888888888889999999999999998 67889999999997775 788899999987 3443 444443 455
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036107 289 MHALEKAKQIYEALKVYEKMKSDDCLTD--TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366 (441)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 366 (441)
+.-+...++-+.|..+|+...++- ..+ . ..|..||.--...|++..|..+=++|.+. -|
T Consensus 473 l~fLi~inde~naraLFetsv~r~-~~~q~k----------------~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~p 533 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERL-EKTQLK----------------RIYDKMIEYESMVGSLNNVYSLEERFREL--VP 533 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHH-HHhhhh----------------HHHHHHHHHHHhhcchHHHHhHHHHHHHH--cC
Confidence 667788899999999999654421 111 1 23777777777777777777776666543 45
Q ss_pred CHHHHHHHHHHHH
Q 036107 367 DCETHARSLKMCC 379 (441)
Q Consensus 367 ~~~t~~~li~~~~ 379 (441)
-..+...+.+-|.
T Consensus 534 Qen~~evF~Sry~ 546 (660)
T COG5107 534 QENLIEVFTSRYA 546 (660)
T ss_pred cHhHHHHHHHHHh
Confidence 5545555555444
No 202
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.60 E-value=0.085 Score=36.04 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=35.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhh
Q 036107 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK-QIYEALKVYEKMKS 310 (441)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~ 310 (441)
..+|..+-..+...|++++|+..|++..+... -+...|..+-.++.+.| ++++|.+.++...+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34555555566666666666666666555432 24555555666666666 46666666655443
No 203
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.59 E-value=1.8 Score=39.45 Aligned_cols=234 Identities=9% Similarity=0.046 Sum_probs=147.9
Q ss_pred HHHHcCCChhHHHHHHHHHHHhcCCC-ccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHH
Q 036107 138 EALGKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD 216 (441)
Q Consensus 138 ~~~~~~~~~~~a~~l~~~m~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 216 (441)
..+.+.|.++.|..=|+......+.. ......+.+...-.-......+..+.-.|+...|++....+-+-.+++...|.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 35778999999999999988755322 12222222222112334445566667789999999999888777788999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH----HHHH----
Q 036107 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT----CTIV---- 288 (441)
Q Consensus 217 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~----~~~l---- 288 (441)
.--.+|...|.+..|..=+....+.. .-++.++--+-.-+...|+.+.++...++-.+. .||... |..|
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence 99999999999999887665554432 135566666667778889988888888887664 344322 1111
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 036107 289 -----MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS 363 (441)
Q Consensus 289 -----l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 363 (441)
+....+.+++.++..-.+...+.........| ..+..+=.+|...|++.+|+..-.+..+
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~-------------~~~r~~c~C~~~d~~~~eAiqqC~evL~-- 335 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRY-------------NGFRVLCTCYREDEQFGEAIQQCKEVLD-- 335 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceee-------------eeeheeeecccccCCHHHHHHHHHHHHh--
Confidence 12234556666776666666554332122221 2245555667778888888888777764
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhhHHH
Q 036107 364 CKPD-CETHARSLKMCCHKKRMKDGML 389 (441)
Q Consensus 364 ~~p~-~~t~~~li~~~~~~g~~~~a~~ 389 (441)
+.|| ..++.-=..+|.-...++.|..
T Consensus 336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 336 IDPDDVQVLCDRAEAYLGDEMYDDAIH 362 (504)
T ss_pred cCchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4565 4455544555555555555543
No 204
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.59 E-value=0.51 Score=45.61 Aligned_cols=157 Identities=9% Similarity=0.025 Sum_probs=106.8
Q ss_pred HHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHH
Q 036107 140 LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLI 219 (441)
Q Consensus 140 ~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 219 (441)
..-.++++.+.++.+.-.- .| ..+..-.+.+++-+-+.|-.+.|+++...-+ .-.
T Consensus 271 av~~~d~~~v~~~i~~~~l----l~----------~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-----------~rF 325 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNL----LP----------NIPKDQGQSIARFLEKKGYPELALQFVTDPD-----------HRF 325 (443)
T ss_dssp HHHTT-HHH-----HHHHT----GG----------G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH-----------HHH
T ss_pred HHHcCChhhhhhhhhhhhh----cc----------cCChhHHHHHHHHHHHCCCHHHHHhhcCChH-----------HHh
Confidence 3446788887777642221 11 1145668889999999999999998763321 233
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 036107 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY 299 (441)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 299 (441)
....+.|+++.|.++-++. .+...|..|-+.+.+.|+++-|++.|.+..+ |..|+--|.-.|+.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDRE 390 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HH
T ss_pred HHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHH
Confidence 4456789999998877654 4778999999999999999999999998654 567777788889998
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHH
Q 036107 300 EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQK 358 (441)
Q Consensus 300 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~ 358 (441)
...++.+.....|- +|....++...|+.++..+++.+
T Consensus 391 ~L~kl~~~a~~~~~----------------------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 391 KLSKLAKIAEERGD----------------------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHTT-----------------------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHccC----------------------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888777763 77777777778888887777654
No 205
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.56 E-value=0.82 Score=35.43 Aligned_cols=139 Identities=7% Similarity=0.016 Sum_probs=73.7
Q ss_pred cCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHH
Q 036107 142 KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG 221 (441)
Q Consensus 142 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 221 (441)
-.|..++-.++..+..... +..-+|-+|--....-+-+-..++++.+.+-+..+
T Consensus 14 ldG~V~qGveii~k~v~Ss----------------ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis---------- 67 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS----------------NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS---------- 67 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS-----------------HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG----------
T ss_pred HhchHHHHHHHHHHHcCcC----------------CccccceeeeecchhhchhHHHHHHHHHhhhcCch----------
Confidence 3466777777777766654 44444544444444445455555555553322222
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036107 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301 (441)
Q Consensus 222 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 301 (441)
.+|++.....-+-.+- .+..-....++...+.|+-|+-.+++.++.+ +-.+++.....+-.||.+.|+..++
T Consensus 68 --~C~NlKrVi~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~ 139 (161)
T PF09205_consen 68 --KCGNLKRVIECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREA 139 (161)
T ss_dssp --G-S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHH
T ss_pred --hhcchHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhH
Confidence 1233333333332221 1333445566777778888888888888765 3346777777788888888888888
Q ss_pred HHHHHHHhhCCCC
Q 036107 302 LKVYEKMKSDDCL 314 (441)
Q Consensus 302 ~~~~~~m~~~g~~ 314 (441)
.+++.+.-+.|++
T Consensus 140 ~ell~~ACekG~k 152 (161)
T PF09205_consen 140 NELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHTT-H
T ss_pred HHHHHHHHHhchH
Confidence 8888888777764
No 206
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.42 E-value=2 Score=39.07 Aligned_cols=305 Identities=12% Similarity=0.055 Sum_probs=185.8
Q ss_pred hcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHH---HHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhc
Q 036107 100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMV---EALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176 (441)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li---~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~ 176 (441)
+.+.-.|.+.+|+.-|+-.-+ -|+..|-++. ..|.-.|+...|+.=|....+..+.+.
T Consensus 46 k~lla~~Q~sDALt~yHaAve-------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~------------ 106 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVE-------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM------------ 106 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHc-------CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH------------
Confidence 344456778888887753322 2555555543 456777888888887877777442221
Q ss_pred CHHHHHH-HHHHHHhcCCHHHHHHHHHHhhhC-------------CCCcHHHHH--HHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 177 DTRAMSV-LMDTLVKRNSVAHAYKVFLKFKDC-------------ISLSSQIFD--VLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 177 ~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~-------------~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
.-.. --..+.+.|.+++|..=|+.+-+. ..+....++ ..+..+.-.|+...|......+.+
T Consensus 107 ---~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 107 ---AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred ---HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 1111 123567899999999999887321 111112222 234456678899999999999887
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 036107 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320 (441)
Q Consensus 241 ~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 320 (441)
- .+.|...|..--.+|...|++..|+.=++...+..-. +..++--+-..+...|+.+.+.....+..+. .||...+
T Consensus 184 i-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~C 259 (504)
T KOG0624|consen 184 I-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLC 259 (504)
T ss_pred c-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhH
Confidence 4 2458888999999999999999998877776655333 4556666677788899999988888877764 4444321
Q ss_pred HHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 036107 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE---THARSLKMCCHKKRMKDGMLVLNLMREM 397 (441)
Q Consensus 321 ~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~~~~g~~~~a~~~~~~~~~m 397 (441)
-..-. +..+++-----+......+++-++++-.+...+..-....+ .+..+-.++...|++.+|.+ ...+.
T Consensus 260 f~~YK---klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq---qC~ev 333 (504)
T KOG0624|consen 260 FPFYK---KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ---QCKEV 333 (504)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH---HHHHH
Confidence 11111 11110000111234456677777777777765443221222 34445556667788888866 44443
Q ss_pred HHCCCCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhh
Q 036107 398 LSKGIVPQ-ESTHKMLAEELEKKSLGNAKERIDELLTHATEQ 438 (441)
Q Consensus 398 ~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 438 (441)
. .+.|| ..++---..+|.-...++.|..=++.-...+++
T Consensus 334 L--~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 334 L--DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred H--hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 2 45665 556666666666666667666666655544443
No 207
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.31 E-value=1.5 Score=39.16 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=45.7
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036107 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302 (441)
Q Consensus 223 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 302 (441)
.+.+++.+|+..|.+..+.. +-|.+-|..--.+|.+.|.++.|.+=.+.-....-. -..+|..|-.+|...|++++|.
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHH
Confidence 34555555555555555421 123344444555555555555555544444332110 1345555555566666666665
Q ss_pred HHHHHHhhCCCCCCHHH
Q 036107 303 KVYEKMKSDDCLTDTSF 319 (441)
Q Consensus 303 ~~~~~m~~~g~~~~~~~ 319 (441)
+.|+...+ +.|+..+
T Consensus 170 ~aykKaLe--ldP~Ne~ 184 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNES 184 (304)
T ss_pred HHHHhhhc--cCCCcHH
Confidence 55555544 2444443
No 208
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.29 E-value=0.11 Score=35.43 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 036107 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR-KSDYAQKAMKEM 238 (441)
Q Consensus 179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m 238 (441)
.+|..+-..+.+.|++++|+..|++.-+-.+-+...|..+-.+|.+.| ++++|++.|++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 344444444455555555555554442222334444444444455554 355555544443
No 209
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.23 E-value=0.91 Score=44.45 Aligned_cols=171 Identities=11% Similarity=0.025 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhh
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK----RNSVAHAYKVFLKFKD 206 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~ 206 (441)
.....+++..+=.|+-+..++++.+-.+.+ +.-..-. ..-.-.|+.++..++. ....+.|.++++.+..
T Consensus 189 p~~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i~~~la------~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~ 261 (468)
T PF10300_consen 189 PKVLKLLSFVGFSGDRELGLRLLWEASKSE-NIRSPLA------ALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK 261 (468)
T ss_pred HHHHHHHhhcCcCCcHHHHHHHHHHHhccC-CcchHHH------HHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH
Confidence 446667777788899999999998876644 3221111 1123456665555543 5678899999999865
Q ss_pred CCCCcHHHHHHHH-HHHHhcCCHHHHHHHHHHHhhCC--C-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 036107 207 CISLSSQIFDVLI-HGWCKTRKSDYAQKAMKEMFQHG--F-SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282 (441)
Q Consensus 207 ~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g--~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 282 (441)
.. |+...|...- +.+...|++++|.+.|++..... . +.....+--+.-.+.-..+|++|...|..+.+..-. +.
T Consensus 262 ~y-P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Sk 339 (468)
T PF10300_consen 262 RY-PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SK 339 (468)
T ss_pred hC-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HH
Confidence 44 5555555443 56677899999999999765311 1 112234445556677789999999999999886443 33
Q ss_pred HHHHHHHH-HHHhcCCH-------HHHHHHHHHHhh
Q 036107 283 ITCTIVMH-ALEKAKQI-------YEALKVYEKMKS 310 (441)
Q Consensus 283 ~~~~~ll~-~~~~~~~~-------~~a~~~~~~m~~ 310 (441)
.+|.-+.. ++...|+. ++|.++|.+...
T Consensus 340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44444333 34556777 888888887654
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=1.9 Score=37.78 Aligned_cols=145 Identities=12% Similarity=0.075 Sum_probs=102.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 255 (441)
-..+.++++..+.-.|.+.-....++++.+. -+.+......|.+.-.+.|+.+.|...|++..+..-+.|..+.+.++.
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 3456666777777778887888888887553 356777788899999999999999999998876555566666665543
Q ss_pred -----HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 036107 256 -----HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324 (441)
Q Consensus 256 -----~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (441)
.|.-.+++-.|...+.+.....-. |+..-|.-.-+..-.|+..+|.+..+.|++. .|...+-++++
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 344467788888888887765332 4555554444455578999999999999986 45444444443
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.04 E-value=0.086 Score=37.08 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEK----GC-KPS-VITCTIVMHALEKAKQIYEALKVYEKMK 309 (441)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 309 (441)
.+|+.+-..|...|++++|+..|++..+. |- .|+ ..++..+-.+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555556666666666666666655422 11 122 3455566666666666666666666543
No 212
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.03 E-value=0.89 Score=43.95 Aligned_cols=133 Identities=13% Similarity=0.154 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 209 (441)
..-.+.++.-+-+.|..+.|+++..+-.. -.....+.|+++.|.++-+...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------------------rFeLAl~lg~L~~A~~~a~~~~---- 345 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDH-------------------------RFELALQLGNLDIALEIAKELD---- 345 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------------------HHHHHHHCT-HHHHHHHCCCCS----
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------------------HhHHHHhcCCHHHHHHHHHhcC----
Confidence 44577788888888888888887665332 1345567788888877665553
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 289 (441)
+...|..|-....+.|+++-|++.|.+... |..|+--|.-.|+.+...++.+.....|. ++...
T Consensus 346 -~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af 409 (443)
T PF04053_consen 346 -DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAF 409 (443)
T ss_dssp -THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHH
T ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHH
Confidence 455788888888888888888888877654 56666677778888777777777666653 45566
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 036107 290 HALEKAKQIYEALKVYEK 307 (441)
Q Consensus 290 ~~~~~~~~~~~a~~~~~~ 307 (441)
.++.-.|+++++.+++.+
T Consensus 410 ~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 410 QAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHT-HHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 666666777777766654
No 213
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=4 Score=39.44 Aligned_cols=341 Identities=9% Similarity=-0.031 Sum_probs=193.8
Q ss_pred hhcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHH
Q 036107 28 LLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDK 107 (441)
Q Consensus 28 ~l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 107 (441)
..+..|++. .|..+|.---..++ ++...|+.-..+.+..++++.+..--. ....+.|++..-+.....+..-.|+
T Consensus 11 aa~s~~d~~-~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~--k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 11 AAFSSGDFE-TAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDAT--KTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred hhcccccHH-HHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHH--HHHhcCCchhhHHHHhHHHHHhccc
Confidence 456778887 78777772222222 266677777777788888777655433 3345778888888888877778889
Q ss_pred HHHHHhhhhhHhhhhcCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHH
Q 036107 108 VVEALKCFCFTWAKTQTGYMHT-PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186 (441)
Q Consensus 108 ~~~A~~~~~~~~~~~~~g~~p~-~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 186 (441)
+++|+..|. . .....|+ ...++-+..++.... .+.+.|..-.-.. ...+.......+ ....|..++.
T Consensus 86 ~~eA~~ay~---~--GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~-~l~~~p~t~~~~---~~~~~~~~l~ 153 (539)
T KOG0548|consen 86 YEEAILAYS---E--GLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHE-KLANLPLTNYSL---SDPAYVKILE 153 (539)
T ss_pred HHHHHHHHH---H--HhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHH-HhhcChhhhhhh---ccHHHHHHHH
Confidence 999998883 1 1122333 456777777661111 1122221100000 000000000001 2233333333
Q ss_pred HHHhc----------CCHHHHHHHHHHh------h-------hCCCC------------c----------HHHHHHHHHH
Q 036107 187 TLVKR----------NSVAHAYKVFLKF------K-------DCISL------------S----------SQIFDVLIHG 221 (441)
Q Consensus 187 ~~~~~----------g~~~~a~~~~~~~------~-------~~~~~------------~----------~~~~~~li~~ 221 (441)
.+-+. .++..+....... . ....| + ..-...+.++
T Consensus 154 ~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgna 233 (539)
T KOG0548|consen 154 IIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNA 233 (539)
T ss_pred HhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHH
Confidence 33221 1112222211110 0 01111 0 1124456777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHh
Q 036107 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT-------IVMHALEK 294 (441)
Q Consensus 222 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~-------~ll~~~~~ 294 (441)
.-+..+++.|.+-+....... -++.-++..-.+|...|.+.++...-..-.+.|-. ...-|+ .+-.+|.+
T Consensus 234 aykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 234 AYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhh
Confidence 777888999999888887753 34555666667888888888877777666555432 112222 23346777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc---------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 036107 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF---------LIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365 (441)
Q Consensus 295 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 365 (441)
.++++.+...|.+....-..|+...-..-..--.+.+.. .-.-.=-..+.+.|++..|++.|.+++... .
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P 389 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P 389 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence 888999999999887765566554333322222222111 001111456778999999999999998765 4
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHH
Q 036107 366 PDCETHARSLKMCCHKKRMKDGML 389 (441)
Q Consensus 366 p~~~t~~~li~~~~~~g~~~~a~~ 389 (441)
-|...|..---+|.+.|.+..|..
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~ 413 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALK 413 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHH
Confidence 456688888889999999988855
No 214
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.56 E-value=0.59 Score=41.59 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=86.2
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHH
Q 036107 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRK 265 (441)
Q Consensus 187 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 265 (441)
-..+.+++++|+..|.+.-.-.+-|.+-|..--.+|++.|.++.|.+=.+.-.. +.|. ..+|..|-.+|...|++.+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 456778888888888887655566777788888888888888888887777665 3343 3678888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHH---HHHHHHHHHhhCCCCCCH
Q 036107 266 VDYTLKEMQEKGCKPSVITCTIVMHALE-KAKQIY---EALKVYEKMKSDDCLTDT 317 (441)
Q Consensus 266 a~~l~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~---~a~~~~~~m~~~g~~~~~ 317 (441)
|.+.|+...+ +.|+-.+|-.=+...- +.+... .+..-++.....|..|+.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 8888887765 4566666665555433 333333 333444444444444544
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.48 E-value=0.18 Score=35.42 Aligned_cols=67 Identities=18% Similarity=0.059 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHH
Q 036107 282 VITCTIVMHALEKAKQIYEALKVYEKMKSD--DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359 (441)
Q Consensus 282 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m 359 (441)
..+|+.+-..|...|++++|...|++..+. ...++ . ..++ .+++.+-..|...|++++|++.+++-
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~--~~~a---------~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD-H--PDTA---------NTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH-H--HHHH---------HHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC-C--HHHH---------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 457888999999999999999999988753 11111 1 0111 34888888999999999999999875
Q ss_pred H
Q 036107 360 E 360 (441)
Q Consensus 360 ~ 360 (441)
.
T Consensus 73 l 73 (78)
T PF13424_consen 73 L 73 (78)
T ss_dssp H
T ss_pred H
Confidence 4
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.41 E-value=4.4 Score=37.96 Aligned_cols=171 Identities=11% Similarity=0.054 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCCHhh
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC----ISLSSQIFDVLIHGWCK---TRKSDYAQKAMKEMFQHGFSPDGVS 249 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~ 249 (441)
+..+...++-+|....+++...++++.++.- +.-+..+--...-++-+ .|+.++|++++..+....-.++..|
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4555567777899999999999999999652 22222222334445566 8999999999999666556678888
Q ss_pred HHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH----HHHHHH---H-HHhhCC
Q 036107 250 YTCFIEHYCR---------EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY----EALKVY---E-KMKSDD 312 (441)
Q Consensus 250 ~~~li~~~~~---------~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~----~a~~~~---~-~m~~~g 312 (441)
|..+-..|-. ....++|...|.+--+. .||.++--.+...+.-.|... +..++- . ...++|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 8877766542 12367777777765443 355544333333333334321 222222 1 112233
Q ss_pred CCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036107 313 CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362 (441)
Q Consensus 313 ~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 362 (441)
.......| .-+.+++.+..-.|+.++|.+..++|...
T Consensus 298 ~~~~~~dY-------------Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLEKMQDY-------------WDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccccH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 22222221 44677888888899999999999998865
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.39 E-value=2.9 Score=35.76 Aligned_cols=55 Identities=7% Similarity=0.026 Sum_probs=28.1
Q ss_pred HHhcCCHHHHHHHHHHHhhCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107 222 WCKTRKSDYAQKAMKEMFQHGF--SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 222 ~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
+...|++++|.+.|+++..... +--....-.+..++.+.|++++|...+++..+.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455666666666666654311 001123344555666666666666666665543
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.34 E-value=0.29 Score=33.73 Aligned_cols=55 Identities=7% Similarity=0.015 Sum_probs=30.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 221 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
.|.+.+++++|.++++.+...+ +.+...|...-..+.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555566666666666665542 123444555555556666666666666665543
No 219
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.33 E-value=2.1 Score=33.96 Aligned_cols=114 Identities=11% Similarity=0.041 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY 257 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 257 (441)
......++..+.+.+..+.+..+++.+-.....+...+|.+|..|++.+ ..+..+.+.. ..+......+++.|
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHH
Confidence 3445567888888899999999999874332477788999999999864 4444555542 13455666789999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHH
Q 036107 258 CREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA-KQIYEALKVYEK 307 (441)
Q Consensus 258 ~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~ 307 (441)
.+.+-++++..++..+.. |...+..+... ++++.|.+++.+
T Consensus 80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 999999999999988743 22233334444 788888888875
No 220
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.31 E-value=4.1 Score=37.14 Aligned_cols=167 Identities=11% Similarity=0.102 Sum_probs=88.2
Q ss_pred hchhhHHHHHhhhc-----CchhhHHHHHHHHHhcCCC-hH-HHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHc--
Q 036107 72 LNEQSRISSHALSE-----DHETDVDKVSEILRKRYPS-PD-KVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGK-- 142 (441)
Q Consensus 72 ~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~~~~~~-~g-~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~-- 142 (441)
.+.-+.+-.++.+. ++.++...+...++..... +. .+.+.+.++ ....+.|++.+..+|-+.......
T Consensus 35 ~~~~~~~~~~IK~~t~~fS~lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y---~~L~~~gFk~~~y~~laA~~i~~~~~ 111 (297)
T PF13170_consen 35 AERFKEISKYIKKNTGWFSPLRGNHRFILAALLDISFEDPEEAFKEVLDIY---EKLKEAGFKRSEYLYLAALIILEEEE 111 (297)
T ss_pred HHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcCCCHHHHHHHHHHHH---HHHHHhccCccChHHHHHHHHHHhcc
Confidence 33444454555542 3444444444455444444 22 344445555 555667888888777664444433
Q ss_pred CC----ChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCH----HHHHHHHHHhhh-CCCCcHH
Q 036107 143 SK----KFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSV----AHAYKVFLKFKD-CISLSSQ 213 (441)
Q Consensus 143 ~~----~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~~~~-~~~~~~~ 213 (441)
.. ....|.++++.|++..+... ..+..++..++.. ...++ +.++.+|+.+.+ ++..+-.
T Consensus 112 ~~~~~~~~~ra~~iy~~mKk~H~fLT----------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~ 179 (297)
T PF13170_consen 112 KEDYDEIIQRAKEIYKEMKKKHPFLT----------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGND 179 (297)
T ss_pred cccHHHHHHHHHHHHHHHHHhCcccc----------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcH
Confidence 22 35678899999998764432 3355666666554 34443 344555565544 5444222
Q ss_pred --HHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCCCCHhhHHHH
Q 036107 214 --IFDVLIHGWCKTRK--SDYAQKAMKEMFQHGFSPDGVSYTCF 253 (441)
Q Consensus 214 --~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~l 253 (441)
..+.++........ ...+.++++.+.+.|+++....|..+
T Consensus 180 LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 180 LQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 22222222221111 34666777777777777666665543
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.19 E-value=6.5 Score=39.04 Aligned_cols=82 Identities=17% Similarity=0.145 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036107 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361 (441)
Q Consensus 282 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 361 (441)
..+...+-.-+.+...+.-|.++|..|-+ -..++......+++.+|..+-++.-+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD-------------------------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD-------------------------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc-------------------------HHHHhhheeecccchHhHhhhhhCcc
Confidence 34445555555666677777777777654 34556667778888888887766432
Q ss_pred cCCCCCHH-----------HHHHHHHHHHhcCChhhHHHH
Q 036107 362 DSCKPDCE-----------THARSLKMCCHKKRMKDGMLV 390 (441)
Q Consensus 362 ~g~~p~~~-----------t~~~li~~~~~~g~~~~a~~~ 390 (441)
..||.+ -|...-.+|.++|+-.+|.++
T Consensus 802 --~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~v 839 (1081)
T KOG1538|consen 802 --FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQV 839 (1081)
T ss_pred --ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHH
Confidence 234432 244445666677776666553
No 222
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.13 E-value=0.68 Score=45.50 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhh--------
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS-------- 249 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-------- 249 (441)
.++...+-..+.+...+-.|-++|..|.+ ...++..+...++|.+|..+-+...+ +.||+..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhh
Confidence 34444444444555666666777766643 34566777777888888877777665 3444432
Q ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107 250 ---YTCFIEHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 250 ---~~~li~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
|.-.=.+|.+.|+-.+|..+++++...
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 333445677777777777777777543
No 223
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=7.7 Score=39.23 Aligned_cols=251 Identities=9% Similarity=0.082 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC- 207 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 207 (441)
...+|..+-+---..|+++.|..+++.=...+..+| .-++..-+..-+.-+.+.|+.+....+.-.+++.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~---------lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~ 576 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVP---------LLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL 576 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhH---------HHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 345676666666677888888888775443332222 1124556666777777788888777776655331
Q ss_pred -----------CCCcHHHHHHHHHH--------HHhcCCHHHHHHHH--HHHh----hCCCCCCHhhHHHHHHHHHhcCC
Q 036107 208 -----------ISLSSQIFDVLIHG--------WCKTRKSDYAQKAM--KEMF----QHGFSPDGVSYTCFIEHYCREKD 262 (441)
Q Consensus 208 -----------~~~~~~~~~~li~~--------~~~~~~~~~a~~~~--~~m~----~~g~~p~~~~~~~li~~~~~~g~ 262 (441)
.+.....|--+++- +-..++-..+..-| +... ..|..|+. ...-+++++...
T Consensus 577 ~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~ 653 (829)
T KOG2280|consen 577 NRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKE 653 (829)
T ss_pred HHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhh
Confidence 11111122222210 00111111111111 1100 01222222 233334444433
Q ss_pred HHH----------HHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 036107 263 FRK----------VDYTLKEMQE-KGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331 (441)
Q Consensus 263 ~~~----------a~~l~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 331 (441)
..- -+++.+.+.. .|.....-+.+--+.-+...|+..+|.++-.+.+ .||-..
T Consensus 654 ~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~------------ 717 (829)
T KOG2280|consen 654 KSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRL------------ 717 (829)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----Ccchhh------------
Confidence 111 1122222221 2333444455666666777788888887776665 334433
Q ss_pred ccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036107 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411 (441)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ 411 (441)
|..=+.+++..+++++-+++-+.++. +.-|.-++.+|.+.|+.++|.+++. + +.+.. -
T Consensus 718 ----~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYip---r-----v~~l~----e 775 (829)
T KOG2280|consen 718 ----WWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIP---R-----VGGLQ----E 775 (829)
T ss_pred ----HHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhh---c-----cCChH----H
Confidence 77778888888888887776666541 3447778999999999999987433 3 11111 4
Q ss_pred HHHHHHhcCCccHHHHHH
Q 036107 412 LAEELEKKSLGNAKERID 429 (441)
Q Consensus 412 ll~~~~~~g~~~~a~~~~ 429 (441)
...+|.+.|++.+|.++-
T Consensus 776 kv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 776 KVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHHHhccHHHHHHHH
Confidence 557788888888776653
No 224
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.75 E-value=0.34 Score=33.39 Aligned_cols=57 Identities=16% Similarity=0.073 Sum_probs=49.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107 255 EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312 (441)
Q Consensus 255 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 312 (441)
..|.+.+++++|.++++.+.+.+.. +...+...-.++.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 5688999999999999999987433 67778888899999999999999999999764
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.74 E-value=6.1 Score=37.08 Aligned_cols=170 Identities=13% Similarity=0.101 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCC-CccHHHHHHHHhhcCHHHHHHHHHHHHh---cCCHHHHHHHHHH-h
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNG-YVSLAAMSTVMRRLDTRAMSVLMDTLVK---RNSVAHAYKVFLK-F 204 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~-~ 204 (441)
..+...++-.|....+++..+++++.+...... .+. ...+--...-++-+ .|+.++|++++.. +
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~-----------~~~i~~~yafALnRrn~~gdre~Al~il~~~l 209 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVAN-----------QHNIKFQYAFALNRRNKPGDREKALQILLPVL 209 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhc-----------chHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence 334446666799999999999999999885311 111 22222233345556 8999999999988 5
Q ss_pred hhCCCCcHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCCCHhh---HHHHHHHHHhcCC-HHHHHHHH-
Q 036107 205 KDCISLSSQIFDVLIHGWCK---------TRKSDYAQKAMKEMFQHGFSPDGVS---YTCFIEHYCREKD-FRKVDYTL- 270 (441)
Q Consensus 205 ~~~~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~-~~~a~~l~- 270 (441)
.....++..+|..+-+.|-. ....++|...|.+--+. .||..+ +.+|+........ -.+..++-
T Consensus 210 ~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~ 287 (374)
T PF13281_consen 210 ESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGV 287 (374)
T ss_pred hccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHH
Confidence 66667788888887766632 22477888888766553 355433 2233332222111 12333333
Q ss_pred --H-HHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107 271 --K-EMQEKG---CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312 (441)
Q Consensus 271 --~-~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 312 (441)
. ...+.| -..|---+.+++.++.-.|+.++|.+..+.|....
T Consensus 288 ~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 288 KLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2 222333 33456677899999999999999999999999764
No 226
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.60 E-value=4.2 Score=34.78 Aligned_cols=154 Identities=9% Similarity=0.043 Sum_probs=82.6
Q ss_pred HHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcH-HHHH
Q 036107 138 EALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS-QIFD 216 (441)
Q Consensus 138 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~ 216 (441)
..+.+.|++.+|.+.|+.+...-+..+. -....-.+..++-+.|+++.|...++.+....+-+. ..+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~-----------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPY-----------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTT-----------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 3456788999999999999886544332 345566778888999999999999988743222111 1233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFS---PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293 (441)
Q Consensus 217 ~li~~~~~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 293 (441)
..+.+.+......... ....... --...+..+|.-|=.+.-..+|...+..+.+. =...--.+..-|.
T Consensus 82 ~Y~~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYY 152 (203)
T ss_dssp HHHHHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3333332211111110 0000000 00224555555566666666666666665442 1111123455677
Q ss_pred hcCCHHHHHHHHHHHhhC
Q 036107 294 KAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 294 ~~~~~~~a~~~~~~m~~~ 311 (441)
+.|.+..|..-++.+.+.
T Consensus 153 ~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp CTT-HHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHH
Confidence 888888888888877764
No 227
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.59 E-value=0.8 Score=38.19 Aligned_cols=97 Identities=9% Similarity=0.020 Sum_probs=74.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036107 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE--THARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKML 412 (441)
Q Consensus 335 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~l 412 (441)
.+..+...|++.|+.+.|++.|.++.+....|... .+-.+|..+...+++..+.....-.+.+.+.|-.++...--..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 48888899999999999999999999876666554 5778889999999999998877777777777655555554445
Q ss_pred HHHH--HhcCCccHHHHHHHH
Q 036107 413 AEEL--EKKSLGNAKERIDEL 431 (441)
Q Consensus 413 l~~~--~~~g~~~~a~~~~~~ 431 (441)
..++ ...+++.+|-+.|-.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHc
Confidence 5554 356788887776643
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.56 E-value=1.3 Score=42.13 Aligned_cols=64 Identities=9% Similarity=0.010 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG----VSYTCFIEHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
+...++.+-.+|.+.|++++|...|++-.+. .|+. .+|..+-.+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555566666666666666555442 3442 23555555666666666666666655543
No 229
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.49 E-value=4 Score=43.33 Aligned_cols=93 Identities=18% Similarity=0.142 Sum_probs=58.6
Q ss_pred CCCcHHHHHHHHHHH----HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 036107 208 ISLSSQIFDVLIHGW----CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283 (441)
Q Consensus 208 ~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 283 (441)
.+|+...+..+..+| .....+++|--+|+..-+ ..--+.+|...|+|++|+.+..+|....-. -..
T Consensus 931 y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~ 1000 (1265)
T KOG1920|consen 931 YKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVI 1000 (1265)
T ss_pred eccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHH
Confidence 356666665555444 456777777777765432 235577788888888888888877542110 112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 284 TCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
+-..|..-+...+++-+|-++..+-..
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 235566777777777777777666544
No 230
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.29 E-value=2 Score=43.71 Aligned_cols=151 Identities=14% Similarity=0.206 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHH----HhcCCHHHHHHHHHHhhh
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTL----VKRNSVAHAYKVFLKFKD 206 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~ 206 (441)
....+-|..+.+-.-++.|+.+-+.-.. |..+...++..| -+.|++++|...|-+--.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~~------------------d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQHL------------------DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcCC------------------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 3455667777777777777777554221 444444444444 457999999887755433
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036107 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286 (441)
Q Consensus 207 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~ 286 (441)
-+.|+. +|.-|.....+.+--.+++.+.+.|+. +...-+.||.+|.+.++.++..++.+.-. .|... .-.-
T Consensus 397 ~le~s~-----Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e 467 (933)
T KOG2114|consen 397 FLEPSE-----VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVE 467 (933)
T ss_pred cCChHH-----HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHH
Confidence 334443 667777777788888888898888875 55666888999999999888777766654 33221 1134
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 036107 287 IVMHALEKAKQIYEALKVYEKM 308 (441)
Q Consensus 287 ~ll~~~~~~~~~~~a~~~~~~m 308 (441)
..+..|.+.+-.++|..+-...
T Consensus 468 ~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 468 TALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHhChHHHHHHHHHHh
Confidence 4555556666666665544433
No 231
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.26 E-value=4 Score=33.49 Aligned_cols=135 Identities=15% Similarity=0.178 Sum_probs=85.4
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 232 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
.+.+..+.+.|+.|+...|..+|+.+.+.|.+.. +.++.+.++-+|.......+-.+.. ....+.++=-+|
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDM--- 84 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDM--- 84 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHH---
Confidence 4556666778888888899999999999887654 4555566777777666655533332 222333333333
Q ss_pred CCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 036107 312 DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVL 391 (441)
Q Consensus 312 g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 391 (441)
+.+.+. .+..++..+...|++-+|+++.+...... .++ -..++.+-.+.++...-..++
T Consensus 85 ---------------LkRL~~--~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 85 ---------------LKRLGT--AYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred ---------------HHHhhh--hHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHHHcCCHHHHHHHH
Confidence 333221 17788888999999999999887753211 222 245677777777766655555
Q ss_pred HHHHH
Q 036107 392 NLMRE 396 (441)
Q Consensus 392 ~~~~~ 396 (441)
+.|.+
T Consensus 144 ~ff~~ 148 (167)
T PF07035_consen 144 RFFEE 148 (167)
T ss_pred HHHHH
Confidence 55544
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.00 E-value=9.2 Score=37.55 Aligned_cols=167 Identities=8% Similarity=-0.019 Sum_probs=92.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHH
Q 036107 250 YTCFIEHYCREKDFRKVDYTLKEMQEK-GCKPS-----VITCTIVMHALEK----AKQIYEALKVYEKMKSDDCLTDTSF 319 (441)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~-----~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~ 319 (441)
+..+++...-.||-+.+++++.+-.+. |+.-. ..+|+.++..++. ....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 456666666777777777777775443 23211 1234444444433 34566777777777764 344433
Q ss_pred HHHHHHHHHhcCccchHHHH-HHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 036107 320 YSSLIFILSKAVRFLIYNTM-ISSACVRSEEGNALKLRQKIEEDS---CKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395 (441)
Q Consensus 320 ~~~li~~~~~~g~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 395 (441)
|... -+.+...|++++|++.|++..... -+.....+--+...+.-..++++|.+.+..+.
T Consensus 269 ----------------fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 269 ----------------FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred ----------------HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 2221 234556777888888887654211 12333445556666777788888866444333
Q ss_pred HHHHCCCCCCHHHHHHHHHHH-HhcCCc-------cHHHHHHHHHHHHhhh
Q 036107 396 EMLSKGIVPQESTHKMLAEEL-EKKSLG-------NAKERIDELLTHATEQ 438 (441)
Q Consensus 396 ~m~~~~~~p~~~~~~~ll~~~-~~~g~~-------~~a~~~~~~m~~~~~~ 438 (441)
+ ...+ +..+|.-+.-+| ...|+. ++|.+++........+
T Consensus 333 ~--~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 333 K--ESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred h--cccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 3 1222 334444444443 456666 7777777776655543
No 233
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.96 E-value=4.4 Score=33.22 Aligned_cols=130 Identities=12% Similarity=0.172 Sum_probs=79.5
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhc--CCHHH
Q 036107 119 WAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR--NSVAH 196 (441)
Q Consensus 119 ~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~ 196 (441)
..-...++.|+...|..+|..+.+.|++....+++.. + ..+ |.......+-.+... .-...
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~----~-Vi~------------DSk~lA~~LLs~~~~~~~~~Ql 80 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY----H-VIP------------DSKPLACQLLSLGNQYPPAYQL 80 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----c-ccC------------CcHHHHHHHHHhHccChHHHHH
Confidence 4445678888888999999999999987776666554 2 222 333333333233221 12334
Q ss_pred HHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107 197 AYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 197 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
|.+++.+++. .+..++..+...|++-+|+++...... .+......++.+..+.+|...-..+|+-..+.
T Consensus 81 ~lDMLkRL~~-------~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 81 GLDMLKRLGT-------AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHHHhhh-------hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555555431 266677788888888888888877533 23334456777777777766666666655543
No 234
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=6.9 Score=35.09 Aligned_cols=101 Identities=10% Similarity=0.048 Sum_probs=48.1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHH
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE---KDFRKVDYTLKEMQEKGCKPSVITC 285 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~l~~~m~~~g~~p~~~~~ 285 (441)
+-|...|-.|-..|...|+++.|..-|..-.+.- .++...+..+-.++... .+..++..+|+++..... -|...-
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHH
Confidence 3455555555555555555555555555554420 12233333333322221 224455555555554321 133444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 286 TIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 286 ~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
.-|-..+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44445555556666666666655554
No 235
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.71 E-value=1.3 Score=39.57 Aligned_cols=78 Identities=12% Similarity=0.189 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCCHhhHHHH
Q 036107 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ-----HGFSPDGVSYTCF 253 (441)
Q Consensus 179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~l 253 (441)
.++..++..+...|+.+.+.+.++++-..-+-+...|..+|.+|.+.|+...|.+.|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44455555555566666666666555444445555566666666666666666666555543 3555555544444
Q ss_pred HHH
Q 036107 254 IEH 256 (441)
Q Consensus 254 i~~ 256 (441)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 333
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.37 E-value=6.9 Score=34.03 Aligned_cols=213 Identities=10% Similarity=0.035 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 209 (441)
...|...-.+|....++++|...+.+..+--.. +..-|+ -....|.|.-+..++.. ++
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEn--------------nrslfh-------AAKayEqaamLake~~k-ls 88 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN--------------NRSLFH-------AAKAYEQAAMLAKELSK-LS 88 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh--------------cccHHH-------HHHHHHHHHHHHHHHHH-hH
Confidence 346777778888889999998887776541100 111111 12233444444444422 11
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH---cC--CCCCHHH
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE---KG--CKPSVIT 284 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~g--~~p~~~~ 284 (441)
--+..|+--+..|..+|.++.|-..+++.-+ ..++.++++|++++++-.. .+ .+.-...
T Consensus 89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el 152 (308)
T KOG1585|consen 89 EVVDLYEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFEL 152 (308)
T ss_pred HHHHHHHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 2233466777888888888888777776543 1234455555555555321 11 1112233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC-
Q 036107 285 CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS- 363 (441)
Q Consensus 285 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g- 363 (441)
|..+-..+.+...+++|-..|..-.. ++.-++.|...++. |-+.|-.|....++..|.+.++.--+.+
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~---------~~~~~~~y~~~~k~--~va~ilv~L~~~Dyv~aekc~r~~~qip~ 221 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGV---------AADKCDAYNSQCKA--YVAAILVYLYAHDYVQAEKCYRDCSQIPA 221 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhh---------HHHHHhhcccHHHH--HHHHHHHHhhHHHHHHHHHHhcchhcCcc
Confidence 44455566777777777665543321 11122222223222 6777777888889999999998854332
Q ss_pred --CCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 036107 364 --CKPDCETHARSLKMCCHKKRMKDGMLVLN 392 (441)
Q Consensus 364 --~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 392 (441)
-.-+..+...||.+| ..|+.+++.++..
T Consensus 222 f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 222 FLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred ccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 234556788888887 5688888777544
No 237
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.04 E-value=8 Score=34.71 Aligned_cols=98 Identities=9% Similarity=0.032 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH--
Q 036107 319 FYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE-- 396 (441)
Q Consensus 319 ~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~-- 396 (441)
.|-..+..+.+.-...++..++..+...|+.+.+.+.+++..+.. .-+...|..++.+|.+.|+...|...++-+.+
T Consensus 139 ~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 139 EWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 333333444444333558888999999999999999999998654 56778899999999999999999887776665
Q ss_pred HHHCCCCCCHHHHHHHHHHHH
Q 036107 397 MLSKGIVPQESTHKMLAEELE 417 (441)
Q Consensus 397 m~~~~~~p~~~~~~~ll~~~~ 417 (441)
+.+.|+.|...+.....+...
T Consensus 218 ~edlgi~P~~~~~~~y~~~~~ 238 (280)
T COG3629 218 AEELGIDPAPELRALYEEILR 238 (280)
T ss_pred hhhcCCCccHHHHHHHHHHhc
Confidence 234699999998887777743
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.89 E-value=3.1 Score=39.73 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS----QIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 241 (441)
+...++.+-.+|.+.|++++|+..|++.-.- .|+. ..|..+-.+|.+.|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL-NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7889999999999999999999999886332 2442 45999999999999999999999998874
No 239
>PRK15331 chaperone protein SicA; Provisional
Probab=91.62 E-value=1.9 Score=35.02 Aligned_cols=86 Identities=9% Similarity=-0.048 Sum_probs=47.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036107 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302 (441)
Q Consensus 223 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 302 (441)
-..|++++|..+|.-+...+.- +..-|..|-.++-..+++++|...|...-..+. -|...+-..-.++...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 4456666666666666553321 233334444445556666777666666544332 13333444555666667777777
Q ss_pred HHHHHHhh
Q 036107 303 KVYEKMKS 310 (441)
Q Consensus 303 ~~~~~m~~ 310 (441)
..|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 76666665
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.27 E-value=3.6 Score=36.29 Aligned_cols=98 Identities=11% Similarity=0.126 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-HHHHHHH
Q 036107 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS--PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK-GCKPS-VITCTIV 288 (441)
Q Consensus 213 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~-~~~~~~l 288 (441)
..|+.-+.. .+.|++..|...|....+.... -....+-.|..++...|++++|-.+|..+.+. +-.|- ...+--|
T Consensus 143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 357776664 4667799999999999876311 12345778899999999999999999998765 22222 3567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC
Q 036107 289 MHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
-.+..+.|+.++|..+|++..+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 78888999999999999998875
No 241
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.13 E-value=6.8 Score=35.08 Aligned_cols=63 Identities=11% Similarity=0.104 Sum_probs=31.0
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH-GFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~l~~ 271 (441)
.++..+.-.+|..+++.+++.+-.++++.-... +..-|..-|..+|+...+.|+..-..++.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 344444555555555555555555555544433 333444555555555555555444444433
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.12 E-value=3.3 Score=32.86 Aligned_cols=74 Identities=12% Similarity=0.104 Sum_probs=50.0
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 036107 187 TLVKRNSVAHAYKVFLKFKDCISLS---SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260 (441)
Q Consensus 187 ~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 260 (441)
...+.|++++|.+.|+.+....+.. ...---|+.+|.+.+++++|...+++..+....-.-+-|...+.|++..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 4456788889988888886644433 3344557788888889998888888888753222234566666665543
No 243
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.86 E-value=5.6 Score=33.15 Aligned_cols=96 Identities=16% Similarity=0.059 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH----H
Q 036107 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD--GVSYTCFIEHYCREKDFRKVDYTLKEMQEK---GCKPSV----I 283 (441)
Q Consensus 213 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~----~ 283 (441)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+.....+.... |-.++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3567788888888888999888888887644433 345677788888888888888887776543 222221 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 284 TCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
.|..|. +...+++..|-+.|-+...
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccCc
Confidence 222222 3456889988888877654
No 244
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.62 E-value=27 Score=37.52 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCC--ChhHHHHHHHHHHH
Q 036107 131 ETYNAMVEALGKSK--KFGLMWELVKEIDE 158 (441)
Q Consensus 131 ~~y~~li~~~~~~~--~~~~a~~l~~~m~~ 158 (441)
.-.-.+|.+|++.+ .++.|++...+.+.
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 33446777888776 66666666666654
No 245
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.54 E-value=18 Score=35.18 Aligned_cols=166 Identities=8% Similarity=0.065 Sum_probs=92.6
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 288 (441)
..|-...-++|..++.+..+.-++.+-.+|..-| -+-..|-.++..|..+ ..++-..+++++.+..+ |.....-.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHH
Confidence 4455566677777777777777777777777654 4566677777777776 55667777777766544 23333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCC
Q 036107 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE-EDSCKPD 367 (441)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~ 367 (441)
+.-+...++.+.+..+|.....+-++-.... |-...|.-++.-- ..+.+..+.+..+.. ..|...-
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~-----------~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~ 204 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNA-----------AIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRG 204 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhh-----------hHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchH
Confidence 3334444677777777776665432210000 0002333332211 334455555555554 3455555
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHH
Q 036107 368 CETHARSLKMCCHKKRMKDGMLVLN 392 (441)
Q Consensus 368 ~~t~~~li~~~~~~g~~~~a~~~~~ 392 (441)
...+.-+-.-|....++++|.+++.
T Consensus 205 ~Vl~qdv~~~Ys~~eN~~eai~Ilk 229 (711)
T COG1747 205 SVLMQDVYKKYSENENWTEAIRILK 229 (711)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHH
Confidence 5556666666666677777755433
No 246
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.53 E-value=0.046 Score=43.89 Aligned_cols=53 Identities=9% Similarity=0.062 Sum_probs=25.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036107 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306 (441)
Q Consensus 254 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 306 (441)
|..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444444455555555555544434445555555555555554455444444
No 247
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.47 E-value=12 Score=32.96 Aligned_cols=168 Identities=9% Similarity=-0.002 Sum_probs=87.8
Q ss_pred HhcCCHHHHHHHHHHHhhCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh-----
Q 036107 223 CKTRKSDYAQKAMKEMFQHG--FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTIVMHALEK----- 294 (441)
Q Consensus 223 ~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~~~~~ll~~~~~----- 294 (441)
.+.|++++|.+.|+.+...- -+-...+--.++-++.+.+++++|...+++.... +-.||. -|..-|.+.+.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccCC
Confidence 34566666666666666431 1112334445555666666777777666665443 333332 23333333322
Q ss_pred --cCCHHHHHHHHHHHhh-------CCCCCCHHHHHHH-HHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC-
Q 036107 295 --AKQIYEALKVYEKMKS-------DDCLTDTSFYSSL-IFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS- 363 (441)
Q Consensus 295 --~~~~~~a~~~~~~m~~-------~g~~~~~~~~~~l-i~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g- 363 (441)
..+...+.+-|..|.+ +...||...--.. .+.++.. =-.+-+-|.+.|.+..|..-+++|.+.=
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~-----Em~IaryY~kr~~~~AA~nR~~~v~e~y~ 198 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH-----EMAIARYYLKRGAYVAAINRFEEVLENYP 198 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH-----HHHHHHHHHHhcChHHHHHHHHHHHhccc
Confidence 1233333333333332 2223333211111 1111111 1234567889999999999999998751
Q ss_pred -CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 036107 364 -CKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396 (441)
Q Consensus 364 -~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 396 (441)
..-....+-.+..+|-..|..++|.+.-+++..
T Consensus 199 ~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 199 DTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred cccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 122223456677788899999998876555544
No 248
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=13 Score=33.40 Aligned_cols=111 Identities=6% Similarity=-0.011 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR---KSDYAQKAMKEMFQHGFSPDGVSYTCF 253 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~l 253 (441)
|...|-.|-..|.+.|++..|..-|....+-..++...+..+-.++.... .-.++.++|+++..... -|+.+-..|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHHHH
Confidence 88999999999999999999999998886555567777777776655443 45689999999987531 245666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290 (441)
Q Consensus 254 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 290 (441)
-.++...|++.+|...++.|.+..- ....+..+|.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp--~~~~rr~~ie 268 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLP--ADDPRRSLIE 268 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCC--CCCchHHHHH
Confidence 7789999999999999999988632 2334444443
No 249
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.22 E-value=13 Score=33.27 Aligned_cols=136 Identities=10% Similarity=0.099 Sum_probs=98.3
Q ss_pred cCCHHHHHHHHHHhh--hCCCCcHHHHHHHHHHHHh-cC-CHHHHHHHHHHHhh-CCCCCCHhhHHHHHHHHHhcCCHHH
Q 036107 191 RNSVAHAYKVFLKFK--DCISLSSQIFDVLIHGWCK-TR-KSDYAQKAMKEMFQ-HGFSPDGVSYTCFIEHYCREKDFRK 265 (441)
Q Consensus 191 ~g~~~~a~~~~~~~~--~~~~~~~~~~~~li~~~~~-~~-~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~ 265 (441)
...+.+|+.+|+... +.+--|..+...+++.... .+ ....-.++.+-+.. .|-.++..+...+|..+++.++|.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 455678888887552 3466777888888877765 22 34444455555443 3466888899999999999999999
Q ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HhhCCCCCCHHHHHHHHHH
Q 036107 266 VDYTLKEMQEK-GCKPSVITCTIVMHALEKAKQIYEALKVYEK-----MKSDDCLTDTSFYSSLIFI 326 (441)
Q Consensus 266 a~~l~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~-----m~~~g~~~~~~~~~~li~~ 326 (441)
..+++..-... +..-|...|...|+.....|+..-..++.++ +++.|+..+...-..+-..
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 99999887665 6666889999999999999999888877764 3556666666554444333
No 250
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=90.00 E-value=10 Score=31.60 Aligned_cols=125 Identities=7% Similarity=-0.033 Sum_probs=68.7
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCCHHHH
Q 036107 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD---DCLTDTSFY 320 (441)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~ 320 (441)
.|++..--.|-.+..+.|+..+|...|++-..--..-|....-.+-++....+++..|...++.+-+. +-.||.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--- 162 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--- 162 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc---
Confidence 35555555666666666666666666666655434445556666666666666666666666666553 223333
Q ss_pred HHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 036107 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388 (441)
Q Consensus 321 ~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 388 (441)
--.+-..|...|++.+|..-|+..... -|+...-.-.-..+.+.|+.+++.
T Consensus 163 ---------------~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 163 ---------------HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred ---------------hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 334445566666666666666666543 233322211222334555555443
No 251
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.85 E-value=19 Score=34.42 Aligned_cols=81 Identities=7% Similarity=0.148 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 256 (441)
|..+|-.||.-+...|..++..+++++|.+-++--...|..-|.+=...++++.++.+|.+.....+ +...|..-++-
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl~Y 118 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYLEY 118 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHHHH
Confidence 7899999999999999999999999999877777777899989888888899999999999987654 45556665554
Q ss_pred HHh
Q 036107 257 YCR 259 (441)
Q Consensus 257 ~~~ 259 (441)
-.+
T Consensus 119 IRr 121 (660)
T COG5107 119 IRR 121 (660)
T ss_pred HHh
Confidence 333
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.82 E-value=13 Score=33.90 Aligned_cols=153 Identities=10% Similarity=-0.014 Sum_probs=104.9
Q ss_pred HHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHH----
Q 036107 140 LGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF---- 215 (441)
Q Consensus 140 ~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---- 215 (441)
+--+|++.+|-..++++.. .+|+ |..++...=.+|...|+.+.-...++++-....++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~---d~Pt-----------Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLD---DYPT-----------DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVH 178 (491)
T ss_pred hhccccccHHHHHHHHHHH---hCch-----------hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHH
Confidence 3456788888888998887 3443 777778888888899999988888888744333444333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHH
Q 036107 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK---GCKPSVITCTIVMHAL 292 (441)
Q Consensus 216 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~~~~~~ll~~~ 292 (441)
..+--++..+|-+++|++.-++-.+-+ +-|.-.-.++-..+--.|++.++.++..+-... +-..-.+-|-...-.+
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~ 257 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFH 257 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhh
Confidence 334445668899999999988877643 235556667777777889999998877654332 1111122233333345
Q ss_pred HhcCCHHHHHHHHHH
Q 036107 293 EKAKQIYEALKVYEK 307 (441)
Q Consensus 293 ~~~~~~~~a~~~~~~ 307 (441)
...+.++.|+++|+.
T Consensus 258 iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 258 IEGAEYEKALEIYDR 272 (491)
T ss_pred hcccchhHHHHHHHH
Confidence 666999999999975
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.81 E-value=27 Score=36.12 Aligned_cols=166 Identities=13% Similarity=0.169 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHh---cC---CCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDEL---SN---GYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK 203 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~---~~---~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 203 (441)
..+.+.++.+|...+++-.-.-++++.... .. .+.+.+ .............-+..+.+...++.|..+-+.
T Consensus 283 ~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsd---g~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~ 359 (933)
T KOG2114|consen 283 NSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSD---GVVHELIEKDLETKLDILFKKNLYKVAINLAKS 359 (933)
T ss_pred ccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecC---CceeeeeeccHHHHHHHHHHhhhHHHHHHHHHh
Confidence 345678888888887765554444444331 10 000100 011122445566778888999999999888766
Q ss_pred hhhCCCCcHHHHHHHH----HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036107 204 FKDCISLSSQIFDVLI----HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279 (441)
Q Consensus 204 ~~~~~~~~~~~~~~li----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 279 (441)
-.. +..+...+. +.+-+.|++++|...|-+-... +.| .-+|.-|.......+--..++.+.+.|+.
T Consensus 360 ~~~----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla 429 (933)
T KOG2114|consen 360 QHL----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA 429 (933)
T ss_pred cCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc
Confidence 532 333333344 3445789999999988776542 233 24556666667777788888888898886
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 280 PSVITCTIVMHALEKAKQIYEALKVYEKMK 309 (441)
Q Consensus 280 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 309 (441)
+...-+.||.+|.+.++.++-.++.+.-.
T Consensus 430 -~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 430 -NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred -cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 66777899999999999998887776655
No 254
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.59 E-value=8.7 Score=35.97 Aligned_cols=122 Identities=11% Similarity=0.092 Sum_probs=84.3
Q ss_pred HHHHhcCCHHHHHHHHHHhhh------CC---------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhH
Q 036107 186 DTLVKRNSVAHAYKVFLKFKD------CI---------SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY 250 (441)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~~~~------~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 250 (441)
+.+.+.|++..|..-|++... .. ..-..+++.|.-+|.|.+++..|++.-+.....+ ++|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 367788999999888876411 11 1223357778888899999999999888887753 3567677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCH-HHHHHHHHHHhh
Q 036107 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI-VMHALEKAKQI-YEALKVYEKMKS 310 (441)
Q Consensus 251 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~-~~a~~~~~~m~~ 310 (441)
-.--.++...|+++.|...|+.+.+. .|+...-.. |+..-.+..+. +...++|..|-.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77778888899999999999999874 455444444 44333344443 344678887755
No 255
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.32 E-value=8.1 Score=34.91 Aligned_cols=103 Identities=18% Similarity=0.164 Sum_probs=69.9
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 036107 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH---GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283 (441)
Q Consensus 207 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 283 (441)
|.+.++.+...++..-.....++.+...+-+++.. -..|+...| +++.-+. .-+.++++.++..=.+-|+-||-+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 45566666777777766677788888887777643 122222222 2233222 235678888888777888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 284 TCTIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
+++.+|+.+.+.+++.+|.++...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888877776654
No 256
>PRK15331 chaperone protein SicA; Provisional
Probab=89.06 E-value=5.3 Score=32.55 Aligned_cols=88 Identities=9% Similarity=-0.126 Sum_probs=67.5
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 036107 188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267 (441)
Q Consensus 188 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 267 (441)
+-..|++++|..+|.-+.---..+..-|..|-.++-..+.+++|...|......+. -|+..+--.-.++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 34679999999999987432234455577777888888999999999987765443 34455556667788999999999
Q ss_pred HHHHHHHHc
Q 036107 268 YTLKEMQEK 276 (441)
Q Consensus 268 ~l~~~m~~~ 276 (441)
..|....+.
T Consensus 126 ~~f~~a~~~ 134 (165)
T PRK15331 126 QCFELVNER 134 (165)
T ss_pred HHHHHHHhC
Confidence 999988774
No 257
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.48 E-value=0.041 Score=44.19 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=47.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297 (441)
Q Consensus 218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 297 (441)
+|..+.+.+.++...++++.+...+-.-+....+.++..|++.+..++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555566666666666666665544455666666666666666556666665511 11223445555666666
Q ss_pred HHHHHHHHHHHh
Q 036107 298 IYEALKVYEKMK 309 (441)
Q Consensus 298 ~~~a~~~~~~m~ 309 (441)
++++.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 666666555543
No 258
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=88.28 E-value=6.4 Score=29.70 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036107 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361 (441)
Q Consensus 286 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 361 (441)
++|+.+|... +......++. .||.-.....-..+.+.++ |..++.-|...|..++|++++.+..+
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr-------~~N~C~~~~~e~~L~~~~~---~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLR-------LPNYCDLEEVEEVLKEHGK---YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHc-------cCCcCCHHHHHHHHHHcCC---HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4566666666 5544444433 2233333334444444444 99999999999999999999999876
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.15 E-value=18 Score=31.88 Aligned_cols=175 Identities=11% Similarity=0.075 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHH
Q 036107 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKG--CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD-DCLTDTSFYSSLI 324 (441)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li 324 (441)
..|+.-+. -.+.|++++|.+.|+.+.... -+-...+--.++-++.+.++++.|....++.... +-.||.. |..-|
T Consensus 36 ~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Yl 113 (254)
T COG4105 36 ELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYL 113 (254)
T ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHH
Confidence 34444443 456799999999999998652 2334667777888999999999999999998774 4455543 33333
Q ss_pred HHHHhcCccchHHHHHHHHHhcCChh---HHHHHHHHHHH----cCCCCCHHHH------------HHHHHHHHhcCChh
Q 036107 325 FILSKAVRFLIYNTMISSACVRSEEG---NALKLRQKIEE----DSCKPDCETH------------ARSLKMCCHKKRMK 385 (441)
Q Consensus 325 ~~~~~~g~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~----~g~~p~~~t~------------~~li~~~~~~g~~~ 385 (441)
.+++..-.. =-...+.. .|..-|++++. ..-.||...- ..+-+-|.+.|.+.
T Consensus 114 kgLs~~~~i---------~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 114 KGLSYFFQI---------DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred HHHHHhccC---------CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 333322111 00011222 22333333322 1223333321 23445677888887
Q ss_pred hHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107 386 DGMLVLNLMREMLSK--GIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436 (441)
Q Consensus 386 ~a~~~~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 436 (441)
.|.. .+++|.+. ...-....+-.+..+|.+.|..++|.+.-+-+....
T Consensus 185 AA~n---R~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 185 AAIN---RFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred HHHH---HHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 7744 77777765 222233466777888999999999998887776443
No 260
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.79 E-value=13 Score=30.11 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=57.7
Q ss_pred HHHHHHHHHHH---HhcCCHHHHHHHHHHhhhCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 036107 178 TRAMSVLMDTL---VKRNSVAHAYKVFLKFKDCISLS---SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT 251 (441)
Q Consensus 178 ~~~~~~li~~~---~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 251 (441)
..+.+.||... .+.++.+++..++..++- .+|. ..++... .+.+.|++.+|.++|+++...+ |....-.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrv-LRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p~~k 81 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRV-LRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFPYAK 81 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHH-hCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCChHHH
Confidence 34444444433 456778888888777642 2233 3333333 3467788888888888876642 3333344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036107 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301 (441)
Q Consensus 252 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 301 (441)
.|+..|.....-..=...-+++.+.+-.|+. ..++..+....+...|
T Consensus 82 ALlA~CL~~~~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 82 ALLALCLYALGDPSWRRYADEVLESGADPDA---RALVRALLARADLEPA 128 (160)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccch
Confidence 4554444433222222233345555444443 3344444444444333
No 261
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.33 E-value=4 Score=36.74 Aligned_cols=99 Identities=12% Similarity=0.230 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC----ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 252 (441)
...+...++.......+++.++..+-.++.. ..|+.. -.+.++-+. .-+++++..++..=.+.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 3445556666666778899999888777541 222222 222334333 3478899999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 036107 253 FIEHYCREKDFRKVDYTLKEMQEKG 277 (441)
Q Consensus 253 li~~~~~~g~~~~a~~l~~~m~~~g 277 (441)
+|+.+.+.+++.+|.++..+|....
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999888876553
No 262
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.10 E-value=5.2 Score=29.17 Aligned_cols=62 Identities=13% Similarity=0.229 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 036107 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTIVMH 290 (441)
Q Consensus 227 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~~~~~ll~ 290 (441)
+.-++.+-++.+....+.|++....+.+++|.+.+|+.-|.++|+-.+.. |. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34456666677776777777777777777777777777777777766633 22 3345555543
No 263
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.85 E-value=25 Score=33.00 Aligned_cols=133 Identities=11% Similarity=0.023 Sum_probs=90.1
Q ss_pred HHHcCCChhHHHHHHHHHHHhc---CCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHH
Q 036107 139 ALGKSKKFGLMWELVKEIDELS---NGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF 215 (441)
Q Consensus 139 ~~~~~~~~~~a~~l~~~m~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 215 (441)
.|.+.|++..|...|+.....- ...+... .......-..++..|.-++.+.+++..|++.-+..-.--+.|....
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee--~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEE--QKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHH--HHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 5678888988888888755421 0111111 1111122356778888899999999999999988754446677666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-cCC-HHHHHHHHHHHHH
Q 036107 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR-EKD-FRKVDYTLKEMQE 275 (441)
Q Consensus 216 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~-~~~a~~l~~~m~~ 275 (441)
-.=-.++...|+++.|+..|+.+.+ +.|+-..-+.=|..|.+ ..+ .+...++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6667888999999999999999998 46776666555555543 333 3445677777754
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.47 E-value=22 Score=34.45 Aligned_cols=75 Identities=13% Similarity=0.055 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 036107 216 DVLIHGWCKTRKSDYAQKAMKEMFQHGFS-PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK-PSVITCTIVMH 290 (441)
Q Consensus 216 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~~~~~ll~ 290 (441)
..+-.++-+.|+.++|.+.|.+|.+..-. -+......||.++...+.+.++..++.+-.+...+ .-..+|+..+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 34555666778888888888888754211 13346777888888888888888888887544332 22456666553
No 265
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.45 E-value=2.9 Score=25.41 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCC
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNG 162 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~ 162 (441)
.+|..+-..|.+.|++++|.++|++..+..|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 45778889999999999999999999996643
No 266
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.21 E-value=22 Score=31.06 Aligned_cols=205 Identities=10% Similarity=-0.005 Sum_probs=97.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 036107 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264 (441)
Q Consensus 185 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 264 (441)
-.+|-...++++|...+.+..++...+...|.+ ...++.|--+.++|..- .--+..|+--...|.++|..+
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcc
Confidence 345566677777766555443333333333333 23455666666666542 112345666666777777777
Q ss_pred HHHHHHHHHHH--cCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHH
Q 036107 265 KVDYTLKEMQE--KGCKPSV--ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340 (441)
Q Consensus 265 ~a~~l~~~m~~--~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li 340 (441)
-|-..++..-+ +++.|+. ..|.--+......++...|.++ +...-
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el-------------------------------~gk~s 157 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL-------------------------------YGKCS 157 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH-------------------------------HHHhh
Confidence 66665555432 1233332 1222222222222222222222 33333
Q ss_pred HHHHhcCChhHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036107 341 SSACVRSEEGNALKLRQKIEE----DSCKPDC-ETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415 (441)
Q Consensus 341 ~~~~~~g~~~~a~~~~~~m~~----~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~ 415 (441)
..+++..++++|-..+.+-.. ..--|+. ..|...|-.+.-..++..|++.++--.+.-...-.-+..+...|+.+
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 345555555555444433221 1112232 23555555556666777887743321111111112345677778777
Q ss_pred HHhcCCccHHHHHHH
Q 036107 416 LEKKSLGNAKERIDE 430 (441)
Q Consensus 416 ~~~~g~~~~a~~~~~ 430 (441)
| ..|+.+++.++..
T Consensus 238 y-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 238 Y-DEGDIEEIKKVLS 251 (308)
T ss_pred h-ccCCHHHHHHHHc
Confidence 6 4577777776653
No 267
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.98 E-value=1.8 Score=24.99 Aligned_cols=25 Identities=8% Similarity=0.013 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 036107 336 YNTMISSACVRSEEGNALKLRQKIE 360 (441)
Q Consensus 336 ~~~li~~~~~~g~~~~a~~~~~~m~ 360 (441)
|+.|-..|.+.|++++|+++|++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777788888888888888888743
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.81 E-value=2.1 Score=24.72 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 284 TCTIVMHALEKAKQIYEALKVYEKMK 309 (441)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~m~ 309 (441)
+|+.|-..|.+.|++++|..+|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777643
No 269
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.64 E-value=27 Score=31.47 Aligned_cols=122 Identities=11% Similarity=0.052 Sum_probs=84.9
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 036107 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266 (441)
Q Consensus 187 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 266 (441)
.....|++.+|..+|.......+-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 45567999999999988754444456667788999999999999999999987643222233333445555555555555
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 267 DYTLKEMQEKGCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 267 ~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
..+-++.-.. | |...-..+-..+...|+.+.|.+.+-.+.++
T Consensus 223 ~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 223 QDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555443 4 5666667778889999999998877766654
No 270
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=85.48 E-value=17 Score=29.02 Aligned_cols=100 Identities=13% Similarity=0.098 Sum_probs=62.0
Q ss_pred HHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCC
Q 036107 271 KEMQEKGCKPSV--ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348 (441)
Q Consensus 271 ~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~ 348 (441)
..|++.+..++. ...++++.....-+++.....+++.+... ....+.+..+. ..|++++.+.++..-
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l--------~~~~~~~~~~~---ssf~~if~SlsnSsS 94 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFL--------NTDNIIGWLDN---SSFHIIFKSLSNSSS 94 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHh--------hHHHHhhhccc---chHHHHHHHHccChH
Confidence 344555555554 34577777777778888888888777221 01111111111 347777777755554
Q ss_pred -hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 036107 349 -EGNALKLRQKIEEDSCKPDCETHARSLKMCCHK 381 (441)
Q Consensus 349 -~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 381 (441)
---+..+|.-|++.+.+++..-|..+|.++.+.
T Consensus 95 aK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 95 AKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 234667777787777888888888888887654
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=85.33 E-value=3 Score=25.33 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 215 FDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 215 ~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
+..+-..|...|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555555555555554
No 272
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.18 E-value=8.4 Score=28.47 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 230 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+-++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55666666666677777777777777777777777777777777654
No 273
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=85.12 E-value=16 Score=28.49 Aligned_cols=89 Identities=15% Similarity=0.028 Sum_probs=55.5
Q ss_pred HHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--CCCCcHHHHH
Q 036107 139 ALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQIFD 216 (441)
Q Consensus 139 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~ 216 (441)
+++..|+.+.|++.|.+.....|. ....||.--.++.-.|+.++|++=+++.-+ |-+ +.....
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~--------------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacq 116 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE--------------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQ 116 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc--------------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHH
Confidence 456778888888888877664322 567778777888888888888777766522 212 222222
Q ss_pred HH---HHHHHhcCCHHHHHHHHHHHhhCC
Q 036107 217 VL---IHGWCKTRKSDYAQKAMKEMFQHG 242 (441)
Q Consensus 217 ~l---i~~~~~~~~~~~a~~~~~~m~~~g 242 (441)
+. -..|-..|+.+.|..=|+..-+.|
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 22 234556677777777776665544
No 274
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.75 E-value=18 Score=28.81 Aligned_cols=102 Identities=11% Similarity=0.057 Sum_probs=71.8
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhc
Q 036107 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS-----CKPDCETHARSLKMCCHK 381 (441)
Q Consensus 307 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~ 381 (441)
.|.+.+..++..+ ...|.++.-.+..++....+.+++.+.--. -..+..+|.+++.+.++.
T Consensus 27 y~~~~~~~~~~k~--------------~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnS 92 (145)
T PF13762_consen 27 YMQEENASQSTKT--------------IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNS 92 (145)
T ss_pred HhhhcccChhHHH--------------HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccC
Confidence 3455566666654 457888888888888888888888774211 135566799999999776
Q ss_pred CChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccH
Q 036107 382 KRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNA 424 (441)
Q Consensus 382 g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 424 (441)
.--..+- +-++.-|++.+++++..-|..++.++.+....+.
T Consensus 93 sSaK~~~--~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 93 SSAKLTS--LTLFNFLKKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred hHHHHHH--HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 6634332 3356666667899999999999999988744443
No 275
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.51 E-value=13 Score=27.43 Aligned_cols=42 Identities=10% Similarity=0.136 Sum_probs=22.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 036107 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396 (441)
Q Consensus 355 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 396 (441)
-+..+....+.|+.....+.+++|.+.+++..|.++++.++.
T Consensus 32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444455666666666667777666666666665554444
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=84.30 E-value=43 Score=32.64 Aligned_cols=66 Identities=6% Similarity=-0.033 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 036107 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKG-CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313 (441)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 313 (441)
.+=..+-.++.+.|+.++|.+.|++|.+.. ..-+......|+.++...+++.++..++.+-.+...
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 333456666778999999999999997653 222455778899999999999999999999765443
No 277
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.15 E-value=13 Score=36.80 Aligned_cols=131 Identities=8% Similarity=-0.030 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 036107 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260 (441)
Q Consensus 181 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 260 (441)
-+.+.+.+.+.|-.++|+++- +|... -.....+.|+++.|.++..+.. +..-|..|-++..+.
T Consensus 617 rt~va~Fle~~g~~e~AL~~s--------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS--------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSA 679 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC--------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhc
Confidence 344555556666666666443 22111 1122345677777777665542 556677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHH
Q 036107 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMI 340 (441)
Q Consensus 261 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li 340 (441)
|++..|.+.|...+. |..|+-.+...|+-+....+-...++.|. .|...
T Consensus 680 ~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~----------------------~N~AF 728 (794)
T KOG0276|consen 680 GELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK----------------------NNLAF 728 (794)
T ss_pred ccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc----------------------cchHH
Confidence 777777777765433 45555556666665555555555555442 56666
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 036107 341 SSACVRSEEGNALKLRQKI 359 (441)
Q Consensus 341 ~~~~~~g~~~~a~~~~~~m 359 (441)
.+|...|+++++.+++.+-
T Consensus 729 ~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHcCCHHHHHHHHHhc
Confidence 7788889999998887653
No 278
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.06 E-value=30 Score=30.70 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--
Q 036107 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS-- 209 (441)
Q Consensus 132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-- 209 (441)
.|+.-+..+ +.|++..|...|....+..|..+ .....+--|..++...|++++|..+|..+.++.+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~-----------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s 211 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNST-----------YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS 211 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCc-----------ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC
Confidence 577777554 45668888888888877443322 2556667778888888888888888877733222
Q ss_pred -CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 210 -LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241 (441)
Q Consensus 210 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 241 (441)
.-...+--|-.+..+.|+.++|..+|++..+.
T Consensus 212 ~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 212 PKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 22234555556667778888888888887764
No 279
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.33 E-value=20 Score=35.56 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=94.2
Q ss_pred hhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhH
Q 036107 69 SLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGL 148 (441)
Q Consensus 69 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~ 148 (441)
.++++.|..++..+.+ ...+.+.+...+.|.-++|+++- +|+.- -.....+.|+++.
T Consensus 599 rrd~~~a~~vLp~I~k--------~~rt~va~Fle~~g~~e~AL~~s------------~D~d~---rFelal~lgrl~i 655 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK--------EIRTKVAHFLESQGMKEQALELS------------TDPDQ---RFELALKLGRLDI 655 (794)
T ss_pred hccccccccccccCch--------hhhhhHHhHhhhccchHhhhhcC------------CChhh---hhhhhhhcCcHHH
Confidence 3555555555443332 12233445566677777777664 23321 1233456778888
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCH
Q 036107 149 MWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS 228 (441)
Q Consensus 149 a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 228 (441)
|.++..+.. +..-|..|-++..+.|++..|.+.|...++ |..|+-.+...|+-
T Consensus 656 A~~la~e~~-------------------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d--------~~~LlLl~t~~g~~ 708 (794)
T KOG0276|consen 656 AFDLAVEAN-------------------SEVKWRQLGDAALSAGELPLASECFLRARD--------LGSLLLLYTSSGNA 708 (794)
T ss_pred HHHHHHhhc-------------------chHHHHHHHHHHhhcccchhHHHHHHhhcc--------hhhhhhhhhhcCCh
Confidence 877755532 556788888888888888888888877654 77778778888877
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273 (441)
Q Consensus 229 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 273 (441)
+....+=....+.|. .|.-.-+|...|+++++.+++.+-
T Consensus 709 ~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 709 EGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 766666666655543 233444566678888888777654
No 280
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.23 E-value=7.9 Score=33.09 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036107 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415 (441)
Q Consensus 336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~ 415 (441)
.+..|+.+.+.+.+.+|+...++-++.. ..|..+-..+++.+|-.|++++|..-+++..+| +....+-..+|..+|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l-~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL-SPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhc-CcccchHHHHHHHHHHH
Confidence 5566778888888888888887765442 233445566788889999999987766665554 23455566677777665
Q ss_pred H
Q 036107 416 L 416 (441)
Q Consensus 416 ~ 416 (441)
-
T Consensus 82 e 82 (273)
T COG4455 82 E 82 (273)
T ss_pred H
Confidence 3
No 281
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=82.56 E-value=28 Score=29.17 Aligned_cols=125 Identities=10% Similarity=0.063 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHH
Q 036107 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS-PDGVSYTCFIEH 256 (441)
Q Consensus 179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~ 256 (441)
..--.|-.++.+.|+..+|...|++.-.| +.-|....-.+-++....+++..|...++++.+.... .++.+.-.+-..
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 33345666777888888888888776444 4456666667777777778888888888887764210 122234455567
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036107 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 305 (441)
+...|.+.+|+.-|+.....--.|....|-.. .+.+.|+.+++..-+
T Consensus 170 laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e--~La~qgr~~ea~aq~ 216 (251)
T COG4700 170 LAAQGKYADAESAFEVAISYYPGPQARIYYAE--MLAKQGRLREANAQY 216 (251)
T ss_pred HHhcCCchhHHHHHHHHHHhCCCHHHHHHHHH--HHHHhcchhHHHHHH
Confidence 77788888888888887776443444443332 245666666555433
No 282
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=82.46 E-value=21 Score=27.84 Aligned_cols=90 Identities=8% Similarity=0.020 Sum_probs=60.1
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHh---hHHHHHHHHHhcCC
Q 036107 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH-GFSPDGV---SYTCFIEHYCREKD 262 (441)
Q Consensus 187 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~---~~~~li~~~~~~g~ 262 (441)
+++..|+++.|++.|.+.-.-.+.....||.--.++--.|+.++|+.=+++..+. |-+ +.. .|-.--..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 5667788888888887765445556677888888888888888888877777653 222 221 22223334556777
Q ss_pred HHHHHHHHHHHHHcC
Q 036107 263 FRKVDYTLKEMQEKG 277 (441)
Q Consensus 263 ~~~a~~l~~~m~~~g 277 (441)
-+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766655
No 283
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.16 E-value=27 Score=28.82 Aligned_cols=139 Identities=12% Similarity=0.077 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-C
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-C 207 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~ 207 (441)
+...|...+. +++.+..++|+.-|.++.+.|.+.. .+-.--..-......|+...|...|+++-. .
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Y------------pvLA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSY------------PVLARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcc------------hHHHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 3455665554 4667788999999999888652211 111111222345678888899988988833 2
Q ss_pred CCCcHH-HHHHHHHH--HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 036107 208 ISLSSQ-IFDVLIHG--WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP 280 (441)
Q Consensus 208 ~~~~~~-~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 280 (441)
-.|-.. -...|=.+ +...|.++.+..-.+-+...|-+.-...-.+|--+-.+.|++.+|.+.|.++......|
T Consensus 125 ~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 125 SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred CCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 223221 22222222 34567777777777766655444344444566666677788888888887776543333
No 284
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.06 E-value=42 Score=30.90 Aligned_cols=155 Identities=12% Similarity=-0.008 Sum_probs=109.7
Q ss_pred hcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhH----HHHHHHHHhcCCHHH
Q 036107 190 KRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY----TCFIEHYCREKDFRK 265 (441)
Q Consensus 190 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~ 265 (441)
-.|++.+|-..++++-+..+.|...++..=.+|.-.|+.+.....+++..-. ..||...| ...--++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4688888888899988888889999999999999999999999988888753 23444333 334445567899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHh
Q 036107 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV 345 (441)
Q Consensus 266 a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~ 345 (441)
|++.-++-.+.+- .|.-.-.++.+.+--.|+..++.++..+-.+.=- ...|+.+ .-|-...-.+..
T Consensus 194 AEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr------~s~mlas-------HNyWH~Al~~iE 259 (491)
T KOG2610|consen 194 AEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR------QSWMLAS-------HNYWHTALFHIE 259 (491)
T ss_pred HHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchh------hhhHHHh-------hhhHHHHHhhhc
Confidence 9999888776543 3666667778888889999999887765443211 1111110 114444455666
Q ss_pred cCChhHHHHHHHHH
Q 036107 346 RSEEGNALKLRQKI 359 (441)
Q Consensus 346 ~g~~~~a~~~~~~m 359 (441)
.+.++.|+++|+.=
T Consensus 260 ~aeye~aleIyD~e 273 (491)
T KOG2610|consen 260 GAEYEKALEIYDRE 273 (491)
T ss_pred ccchhHHHHHHHHH
Confidence 78999999999763
No 285
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=81.89 E-value=3.7 Score=36.92 Aligned_cols=51 Identities=29% Similarity=0.367 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLK 376 (441)
Q Consensus 311 ~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 376 (441)
..+.||+.+| ||..|....+.||+++|++++++.++.|+.--..||-.-++
T Consensus 250 ~~v~~dTe~Y---------------y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 250 EPMLNDTESY---------------FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred CccCchHHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 3456788877 99999999999999999999999999998877777755443
No 286
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=81.87 E-value=26 Score=33.12 Aligned_cols=245 Identities=10% Similarity=-0.031 Sum_probs=136.0
Q ss_pred HHHHhcCCHHHHHHHHHHhhh----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH--hhC--CCC-CCHhhHHHHHHH
Q 036107 186 DTLVKRNSVAHAYKVFLKFKD----CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM--FQH--GFS-PDGVSYTCFIEH 256 (441)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m--~~~--g~~-p~~~~~~~li~~ 256 (441)
.-+|+.|+.+....+|+..-+ .++.-+.+|+.|-++|.-.+++++|+++-..= ..+ |-+ -...+...|-+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 357888999999999987633 33444556777777777788888888764321 111 100 112233344444
Q ss_pred HHhcCCHHHHHHHHHH----HHHcCCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHH---
Q 036107 257 YCREKDFRKVDYTLKE----MQEKGCKP-SVITCTIVMHALEKAKQI--------------------YEALKVYEKM--- 308 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~----m~~~g~~p-~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~m--- 308 (441)
+--.|.+++|.-.-.+ .++.|-+. ....+..+-..|...|+- +.|.++|.+=
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5556777777654332 23333222 234555666666655541 2233333321
Q ss_pred -hhCCCCCCHHHHHHHHHHHHhcCcc-------------------------------chHHHHHHHHHhcCChhHHHHHH
Q 036107 309 -KSDDCLTDTSFYSSLIFILSKAVRF-------------------------------LIYNTMISSACVRSEEGNALKLR 356 (441)
Q Consensus 309 -~~~g~~~~~~~~~~li~~~~~~g~~-------------------------------~~~~~li~~~~~~g~~~~a~~~~ 356 (441)
.+.| |. .+.-.+|+..|+. ..+..+-+++.-.|+++.|.+.|
T Consensus 185 ~~~lg---Dr---~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 185 SEKLG---DR---LAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHhh---hH---HhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 1111 00 1111223333322 56667777777888888888887
Q ss_pred HHHH----HcCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH-H-CCCCCCHHHHHHHHHHHHhcCCccHHHHHH
Q 036107 357 QKIE----EDSC-KPDCETHARSLKMCCHKKRMKDGMLVLNLMREML-S-KGIVPQESTHKMLAEELEKKSLGNAKERID 429 (441)
Q Consensus 357 ~~m~----~~g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~-~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 429 (441)
+.-. +.|- .....+.-+|-.+|.-..+++.|..++..--.+. + ....-..+.|-+|-.++...|.-++|..+.
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 7643 2221 2223344456666666667777766544111111 1 134456678889999999999999998887
Q ss_pred HHHHHHh
Q 036107 430 ELLTHAT 436 (441)
Q Consensus 430 ~~m~~~~ 436 (441)
+.-.+.+
T Consensus 339 e~hl~~s 345 (639)
T KOG1130|consen 339 ELHLRSS 345 (639)
T ss_pred HHHHHHH
Confidence 7655443
No 287
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.63 E-value=19 Score=30.51 Aligned_cols=73 Identities=12% Similarity=-0.043 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 036107 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK---GCKPSVITCTIVMHALEKAKQIYEA 301 (441)
Q Consensus 228 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a 301 (441)
-+.|++.|-++...+.--++.....|-..|. ..+.+++..++-...+. +-.+|+..+.+|...+.+.|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3567777777776665544444444444443 56777777777776543 3366777788888888887777766
No 288
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.77 E-value=18 Score=30.64 Aligned_cols=81 Identities=14% Similarity=-0.026 Sum_probs=59.1
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 036107 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGN 423 (441)
Q Consensus 344 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 423 (441)
.+.|+ +.|.+.|-.+...+.--+......|..-|. ..+.+++.+++--.-++...+-.+|+..+..|...+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34455 789999999988886666666666666555 5677778774433333334466899999999999999999999
Q ss_pred HHH
Q 036107 424 AKE 426 (441)
Q Consensus 424 ~a~ 426 (441)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 289
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.64 E-value=43 Score=30.19 Aligned_cols=141 Identities=12% Similarity=0.079 Sum_probs=92.3
Q ss_pred HHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHH-HHH
Q 036107 139 ALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI-FDV 217 (441)
Q Consensus 139 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~ 217 (441)
.....|++.+|..+|.......+. +...--.+..+|...|+.+.|..++..+.....-+... ...
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~--------------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a 208 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE--------------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQA 208 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc--------------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHH
Confidence 466789999999999998875533 45677788899999999999999999996533333322 222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHh
Q 036107 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK--GCKPSVITCTIVMHALEK 294 (441)
Q Consensus 218 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~~~~~ll~~~~~ 294 (441)
-|..+.+.....+...+-.+.-.. | |...=-.+-..+...|+.+.|.+.+-.+.+. |.. |...=..+++.+.-
T Consensus 209 ~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~ 284 (304)
T COG3118 209 QIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEA 284 (304)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHh
Confidence 344444444444444444444432 4 5555556677788899999998877666443 333 44455566666555
Q ss_pred cCC
Q 036107 295 AKQ 297 (441)
Q Consensus 295 ~~~ 297 (441)
.|.
T Consensus 285 ~g~ 287 (304)
T COG3118 285 FGP 287 (304)
T ss_pred cCC
Confidence 553
No 290
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.84 E-value=52 Score=30.60 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=27.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 185 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
..+.-+.|+++...+........ .++...|.++... +.++.+++....+....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~-~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED-SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC-ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 34555666666644444444321 2244444444433 66666666666666554
No 291
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.61 E-value=5.3 Score=23.42 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 282 VITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 282 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
..+++.|-..|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677777788888888888888877654
No 292
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.55 E-value=4.8 Score=23.65 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=10.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107 249 SYTCFIEHYCREKDFRKVDYTLKEM 273 (441)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~l~~~m 273 (441)
+++.|-..|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3344444444444444444444443
No 293
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=79.25 E-value=30 Score=27.51 Aligned_cols=53 Identities=8% Similarity=0.008 Sum_probs=23.6
Q ss_pred hcCCHHHHHHHHHHHhhCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107 224 KTRKSDYAQKAMKEMFQHGF--SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 224 ~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
+.|++++|.+.|+.+..+-. +-....--.++.+|.+.+++++|...+++..+.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34455555555555544310 001223334445555555555555555554443
No 294
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=79.08 E-value=58 Score=30.71 Aligned_cols=228 Identities=12% Similarity=0.009 Sum_probs=116.0
Q ss_pred cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHH--HHhcCCHHHHHHHHHHHhhCCCCCCHhh--HHHHHHHHHhcCCHHHH
Q 036107 191 RNSVAHAYKVFLKFKDCISLSSQIFDVLIHG--WCKTRKSDYAQKAMKEMFQHGFSPDGVS--YTCFIEHYCREKDFRKV 266 (441)
Q Consensus 191 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a 266 (441)
.|+-..|.++-.+-.+-+..|....-.|+.+ -.-.|+.+.|.+-|+.|... |.... ...|.-..-+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 4666666666655544444454444444433 23457777777777777652 22211 22233333456666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHH--HHHHHHHHH----hcCcc------
Q 036107 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD-DCLTDTSF--YSSLIFILS----KAVRF------ 333 (441)
Q Consensus 267 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~--~~~li~~~~----~~g~~------ 333 (441)
...-++--+.--. -.-.+.+++...+..|+++.|+++.+.-+.. -+.++..- -..|+.+-. .....
T Consensus 174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 6665554332111 1345566677777777777777777665442 22222211 011111100 00000
Q ss_pred -----------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC
Q 036107 334 -----------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGI 402 (441)
Q Consensus 334 -----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~ 402 (441)
..--.--.++.+.|++.++-.+++.+=+. .|....... ....+.|+.-.. =++-.+.+. .+
T Consensus 253 ~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~l--Y~~ar~gdta~d--RlkRa~~L~--sl 324 (531)
T COG3898 253 LEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALL--YVRARSGDTALD--RLKRAKKLE--SL 324 (531)
T ss_pred HHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHH--HHHhcCCCcHHH--HHHHHHHHH--hc
Confidence 11223346788899999999999988765 444443332 233355553221 111222221 24
Q ss_pred CCC-HHHHHHHHHHHHhcCCccHHHHHHH
Q 036107 403 VPQ-ESTHKMLAEELEKKSLGNAKERIDE 430 (441)
Q Consensus 403 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 430 (441)
+|| ...-..+.++-...|++..|..--+
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 454 4466667777777887776654333
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.70 E-value=34 Score=27.82 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=23.9
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107 224 KTRKSDYAQKAMKEMFQHGFSPDG---VSYTCFIEHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 224 ~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
+.++.+++..+++.|+- +.|.. .++...+ +...|+|.+|..+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV--LRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHH--hCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence 44555556666555554 22332 2222222 34555566666666665443
No 296
>PHA02875 ankyrin repeat protein; Provisional
Probab=77.43 E-value=32 Score=33.06 Aligned_cols=150 Identities=15% Similarity=0.047 Sum_probs=79.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCcHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh--hHHHHHHHHHhc
Q 036107 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV--SYTCFIEHYCRE 260 (441)
Q Consensus 185 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~ 260 (441)
+...++.|+.+-+..+++ .|..|+... ..+.+...++.|+.+-+ +.+.+.|..|+.. ...+.+...+..
T Consensus 6 L~~A~~~g~~~iv~~Ll~---~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 6 LCDAILFGELDIARRLLD---IGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHHhCCHHHHHHHHH---CCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHC
Confidence 455566788877766664 344454432 33455666677877544 4444556656543 223455666778
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHH
Q 036107 261 KDFRKVDYTLKEMQEKGCKPSVI---TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337 (441)
Q Consensus 261 g~~~~a~~l~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~ 337 (441)
|+.+.+..+++ .|...+.. .-.+.+...+..|+.+ +.+.+.+.|..|+... ..-.
T Consensus 79 g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~--------------~~g~ 136 (413)
T PHA02875 79 GDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPN--------------TDKF 136 (413)
T ss_pred CCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCC--------------CCCC
Confidence 88877666654 33222111 1123444455667664 4455556676665421 1123
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036107 338 TMISSACVRSEEGNALKLRQKIEEDSCKPD 367 (441)
Q Consensus 338 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 367 (441)
+.+...+..|+.+.+.. +.+.|..++
T Consensus 137 tpLh~A~~~~~~~~v~~----Ll~~g~~~~ 162 (413)
T PHA02875 137 SPLHLAVMMGDIKGIEL----LIDHKACLD 162 (413)
T ss_pred CHHHHHHHcCCHHHHHH----HHhcCCCCC
Confidence 34555667777654433 344554443
No 297
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=77.38 E-value=32 Score=28.66 Aligned_cols=65 Identities=5% Similarity=-0.004 Sum_probs=34.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHH
Q 036107 290 HALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359 (441)
Q Consensus 290 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m 359 (441)
-.|.+.|.+++|.++++...+ .|+......-+....+..+. |..+|..+.-..-.+....+++..
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~--~h~~lqnFSy~~~~~ki~~~ve~~ 183 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDP--AHPVLQNFSYSHFMQKMKSYVELV 183 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcccc--ccHHHHhccHHHHHHHHHHHHHHH
Confidence 346677777777777776665 33444445555555555554 444444443333334444444443
No 298
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.16 E-value=49 Score=28.83 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=17.1
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC
Q 036107 344 CVRSEEGNALKLRQKIEEDSCKPD 367 (441)
Q Consensus 344 ~~~g~~~~a~~~~~~m~~~g~~p~ 367 (441)
+..+++.+|+++|++.-...+.-+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 456778999999998876544433
No 299
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.91 E-value=54 Score=29.17 Aligned_cols=242 Identities=15% Similarity=0.120 Sum_probs=147.1
Q ss_pred CChHHHHHHHhhhhhHhhhhcCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHH
Q 036107 103 PSPDKVVEALKCFCFTWAKTQTGYMHT--PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRA 180 (441)
Q Consensus 103 ~~~g~~~~A~~~~~~~~~~~~~g~~p~--~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 180 (441)
.+...+++|+.-|....... |-+-+ .....-+|....+.+++++..+.+.++..-- -+.+-+.++..+
T Consensus 38 l~e~~p~~Al~sF~kVlelE--gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYI--------kSAVTrNySEKs 107 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELE--GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYI--------KSAVTRNYSEKS 107 (440)
T ss_pred ccccCHHHHHHHHHHHHhcc--cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH--------HHHHhccccHHH
Confidence 34456777888775332221 22222 3467788999999999999999998886521 112224557888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh----hh--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CCC-----
Q 036107 181 MSVLMDTLVKRNSVAHAYKVFLKF----KD--CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH-----GFS----- 244 (441)
Q Consensus 181 ~~~li~~~~~~g~~~~a~~~~~~~----~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~----- 244 (441)
.|++++....+.+.+...++|+.- ++ +-+.=-.|-.-|-..|...+.+.+..+++.++.+. |-.
T Consensus 108 IN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKG 187 (440)
T KOG1464|consen 108 INSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKG 187 (440)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhcc
Confidence 999999999999998888888653 21 11111112234555666777777888888877542 110
Q ss_pred -CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----HhcCCHHHHH-HHHHHHhh---CCC
Q 036107 245 -PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK-GCKPSVITCTIVMHAL-----EKAKQIYEAL-KVYEKMKS---DDC 313 (441)
Q Consensus 245 -p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~~~~~ll~~~-----~~~~~~~~a~-~~~~~m~~---~g~ 313 (441)
-=...|..=|..|....+-.+...++++...- .-.|.+..... |+-| .+.|++++|. ++|+..+. .|-
T Consensus 188 tQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs 266 (440)
T KOG1464|consen 188 TQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS 266 (440)
T ss_pred chhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhHHHHHHhcccccCC
Confidence 01346777778888888888888888876432 23355544433 3333 4567887765 45555543 443
Q ss_pred CC--CHHHHHHHHHHHHhcCcc----------------chHHHHHHHHHhcCChhHHHHHH
Q 036107 314 LT--DTSFYSSLIFILSKAVRF----------------LIYNTMISSACVRSEEGNALKLR 356 (441)
Q Consensus 314 ~~--~~~~~~~li~~~~~~g~~----------------~~~~~li~~~~~~g~~~~a~~~~ 356 (441)
+- ..--|-.+..++.+.|-- ...+.|+.+|..+ ++.+-.+++
T Consensus 267 pRRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il 326 (440)
T KOG1464|consen 267 PRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQNN-DIIEFERIL 326 (440)
T ss_pred cchhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence 22 233455666777777643 5566777777554 344444444
No 300
>PRK11906 transcriptional regulator; Provisional
Probab=74.46 E-value=87 Score=30.36 Aligned_cols=152 Identities=11% Similarity=0.066 Sum_probs=87.9
Q ss_pred ChHHHHHHHhhhhhHhhhhcCCCCCCH-HHHHHHHHHHHc---------CCChhHHHHHHHHHHHhcCCCccHHHHHHHH
Q 036107 104 SPDKVVEALKCFCFTWAKTQTGYMHTP-ETYNAMVEALGK---------SKKFGLMWELVKEIDELSNGYVSLAAMSTVM 173 (441)
Q Consensus 104 ~~g~~~~A~~~~~~~~~~~~~g~~p~~-~~y~~li~~~~~---------~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~ 173 (441)
.+.+...|+.+|...-. ...+.|+- ..|..+-.++.. .....+|.++-+...+.++.
T Consensus 270 t~~~~~~Al~lf~ra~~--~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~----------- 336 (458)
T PRK11906 270 TPESIYRAMTIFDRLQN--KSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV----------- 336 (458)
T ss_pred CHHHHHHHHHHHHHHhh--cccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-----------
Confidence 45577788888853331 22444543 233332222211 22345666676666665522
Q ss_pred hhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHhhHHH
Q 036107 174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG-FSPDGVSYTC 252 (441)
Q Consensus 174 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ 252 (441)
|..+...+-.+..-.|+++.|...|++...-.+-...+|-..--.+.-+|+.++|.+.+++-.+.. .+.-......
T Consensus 337 ---Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~ 413 (458)
T PRK11906 337 ---DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKE 413 (458)
T ss_pred ---CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHH
Confidence 777777777777888889999999988754323333344444444455788999999998855421 1222334444
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 036107 253 FIEHYCREKDFRKVDYTLKE 272 (441)
Q Consensus 253 li~~~~~~g~~~~a~~l~~~ 272 (441)
.|+.|+.++ .+.|.+++-+
T Consensus 414 ~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 414 CVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHcCCc-hhhhHHHHhh
Confidence 555666655 6666666543
No 301
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.96 E-value=44 Score=26.79 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=26.4
Q ss_pred cCCHHHHHHHHHHhhh--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 191 RNSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241 (441)
Q Consensus 191 ~g~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 241 (441)
.++.+++..+++.|+- --.+...++...| +.+.|++++|.++|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 5666666666666632 1112222333333 35666777777777776654
No 302
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.55 E-value=79 Score=29.48 Aligned_cols=216 Identities=12% Similarity=0.095 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHhh-----C-CCCCCHh
Q 036107 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS----QIFDVLIHGWCKTRKSDYAQKAMKEMFQ-----H-GFSPDGV 248 (441)
Q Consensus 179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~-g~~p~~~ 248 (441)
...+.+-.++.+.+......++..+.-....|.. .....++..+.+.+++..++..++.-.. . .+.|...
T Consensus 103 ~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~f 182 (422)
T KOG2582|consen 103 PLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYF 182 (422)
T ss_pred HHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHH
Confidence 3455666667777777666555544322222222 2233455666667776665554433221 1 1222221
Q ss_pred hHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--------HhcCCHHHHHHHHHHHhhCCCCCCHH
Q 036107 249 SYTCFIEH--YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL--------EKAKQIYEALKVYEKMKSDDCLTDTS 318 (441)
Q Consensus 249 ~~~~li~~--~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~--------~~~~~~~~a~~~~~~m~~~g~~~~~~ 318 (441)
..-..=.| |...++++.|+.+|....-. |....=...+++| .-.|.....-+.=..-..+-.+|-..
T Consensus 183 L~Y~yYgg~iciglk~fe~Al~~~e~~v~~---Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~ 259 (422)
T KOG2582|consen 183 LLYLYYGGMICIGLKRFERALYLLEICVTT---PAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSN 259 (422)
T ss_pred HHHHHhcceeeeccccHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCc
Confidence 11111111 34567899999999887653 3322222333333 34455411111111111111233444
Q ss_pred HHHHHHHHHHhcCccchHHHHHH----HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCChhhHHHH
Q 036107 319 FYSSLIFILSKAVRFLIYNTMIS----SACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC----HKKRMKDGMLV 390 (441)
Q Consensus 319 ~~~~li~~~~~~g~~~~~~~li~----~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~----~~g~~~~a~~~ 390 (441)
.|..+.++|.+.... ...++|. .+.+.++..-|...+..|..+.++-=..||.+|=-.+. +.+..+++.+
T Consensus 260 pY~ef~~~Y~~~~~~-eLr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek- 337 (422)
T KOG2582|consen 260 PYHEFLNVYLKDSST-ELRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEK- 337 (422)
T ss_pred hHHHHHHHHhcCCcH-HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHH-
Confidence 577777777766442 2344443 34667888888888988888777777778877643332 3344555544
Q ss_pred HHHHHHHHHCC
Q 036107 391 LNLMREMLSKG 401 (441)
Q Consensus 391 ~~~~~~m~~~~ 401 (441)
.+-+|.+.|
T Consensus 338 --~Ilqmie~~ 346 (422)
T KOG2582|consen 338 --YILQMIEDG 346 (422)
T ss_pred --HHHHHhccC
Confidence 667776654
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=73.37 E-value=12 Score=20.82 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhc
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELS 160 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~ 160 (441)
.+|..+-..+...|++++|++.|++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 568888899999999999999999988754
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=72.66 E-value=12 Score=20.78 Aligned_cols=28 Identities=18% Similarity=0.087 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 283 ITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 283 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
.+|..+-.+|...|++++|...|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4566677777777777777777777665
No 305
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.32 E-value=94 Score=29.82 Aligned_cols=188 Identities=8% Similarity=-0.039 Sum_probs=90.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 036107 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ--IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR 259 (441)
Q Consensus 182 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 259 (441)
.+.+...+..|+.+-+.-+.+ .|..|+.. ...+.+...++.|+.+.+..+++.-....-..+..-. +.+...+.
T Consensus 36 ~tpL~~A~~~~~~~~v~~Ll~---~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~ 111 (413)
T PHA02875 36 ISPIKLAMKFRDSEAIKLLMK---HGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGM-TPLHLATI 111 (413)
T ss_pred CCHHHHHHHcCCHHHHHHHHh---CCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCC-CHHHHHHH
Confidence 344556667788765544433 23333322 1234566677889988776666532211111111222 33444556
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHH
Q 036107 260 EKDFRKVDYTLKEMQEKGCKPSVIT--CTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~ 337 (441)
.|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+..++ +.|..++... ..-.
T Consensus 112 ~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g~~~~~~d--------------~~g~ 169 (413)
T PHA02875 112 LKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----DHKACLDIED--------------CCGC 169 (413)
T ss_pred hCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hcCCCCCCCC--------------CCCC
Confidence 67664 4455556676665322 123455556778876655544 4444333211 0011
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCH
Q 036107 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETH---ARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406 (441)
Q Consensus 338 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~ 406 (441)
+-+...+..|+.+ +.+.+.+.|..|+...- .+++...+..|..+-+ +-+.+.|..++.
T Consensus 170 TpL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv-------~~Ll~~gad~n~ 230 (413)
T PHA02875 170 TPLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIV-------RLFIKRGADCNI 230 (413)
T ss_pred CHHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHH-------HHHHHCCcCcch
Confidence 2223334455543 44555666766665321 2344434455665433 233345665554
No 306
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=71.49 E-value=84 Score=28.88 Aligned_cols=86 Identities=13% Similarity=-0.004 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhhCCC----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036107 228 SDYAQKAMKEMFQHGF----SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303 (441)
Q Consensus 228 ~~~a~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 303 (441)
.+.|.+.|++....+. ..+...-..++...++.|+.+.-..+++..... .+...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 6678888988887522 345666777888888888877766666666554 367778899999999999999999
Q ss_pred HHHHHhhCC-CCCC
Q 036107 304 VYEKMKSDD-CLTD 316 (441)
Q Consensus 304 ~~~~m~~~g-~~~~ 316 (441)
+++.....+ +++.
T Consensus 223 ~l~~~l~~~~v~~~ 236 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQ 236 (324)
T ss_dssp HHHHHHCTSTS-TT
T ss_pred HHHHHcCCcccccH
Confidence 999998864 5543
No 307
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.29 E-value=80 Score=28.57 Aligned_cols=58 Identities=5% Similarity=-0.009 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273 (441)
Q Consensus 215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 273 (441)
++..-+.|.++|.+.+|.++-+...... +.+...|-.++..+...||--.|.+-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444455555555555555555554431 234445555555555555555555544444
No 308
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=70.89 E-value=1.3e+02 Score=30.85 Aligned_cols=28 Identities=21% Similarity=0.112 Sum_probs=18.6
Q ss_pred HHHHHHHHHH-----HHhcCCccHHHHHHHHHH
Q 036107 406 ESTHKMLAEE-----LEKKSLGNAKERIDELLT 433 (441)
Q Consensus 406 ~~~~~~ll~~-----~~~~g~~~~a~~~~~~m~ 433 (441)
..|+..|++. +...|++++|.+.++.+.
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 3456665554 367899999988887764
No 309
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=70.55 E-value=40 Score=24.78 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 262 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
|.-++.+-++.+....+.|+.....+.++||-+.+++..|.++|+-.+.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55667777888888899999999999999999999999999999988753
No 310
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=70.36 E-value=15 Score=22.87 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036107 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVM 289 (441)
Q Consensus 261 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 289 (441)
|-.+++..++++|.+.|+..+...|..++
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34444444444444444444444444333
No 311
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.02 E-value=29 Score=29.83 Aligned_cols=75 Identities=11% Similarity=0.077 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh---hhCCC
Q 036107 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF---KDCIS 209 (441)
Q Consensus 133 y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~ 209 (441)
.+..|+.+.+.+++.+++.+.++-.+.. |+ |.-.-..++..+|-.|++++|..-.+.. .....
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak---Pt-----------da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK---PT-----------DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC---Cc-----------cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 4556778888889999998888766633 22 5667778889999999999998766654 34566
Q ss_pred CcHHHHHHHHHH
Q 036107 210 LSSQIFDVLIHG 221 (441)
Q Consensus 210 ~~~~~~~~li~~ 221 (441)
+-..+|..+|.+
T Consensus 70 ~~a~lyr~lir~ 81 (273)
T COG4455 70 VGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHHH
Confidence 777788888875
No 312
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.92 E-value=1.2e+02 Score=29.91 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 208 (441)
|-...-++|..++++..+.-...+..+|...| . +...|-.++..|... ..+.-..+++++-+-.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e--------------~kmal~el~q~y~en-~n~~l~~lWer~ve~d 128 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-E--------------SKMALLELLQCYKEN-GNEQLYSLWERLVEYD 128 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc-c--------------hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc
Confidence 55667788999999999999999999998866 1 567888888888888 5566777777664422
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-----DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK-GCKPSV 282 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~ 282 (441)
--|++.-..|..-|-+ ++...+-.+|.....+=++. --..|..++.-- ..+.+..+.+...++.. |..--.
T Consensus 129 fnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~ 205 (711)
T COG1747 129 FNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGS 205 (711)
T ss_pred chhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHH
Confidence 3344333344444444 77777777777665432211 112455554321 35677777777777553 555556
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 283 ITCTIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 283 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
+.+.-+-.-|....++++|.+++..+.+.
T Consensus 206 Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 206 VLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 66677777788888888888888766554
No 313
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.79 E-value=13 Score=22.80 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=8.9
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 036107 255 EHYCREKDFRKVDYTLKEMQ 274 (441)
Q Consensus 255 ~~~~~~g~~~~a~~l~~~m~ 274 (441)
.+|...|+.+.|.+++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.04 E-value=90 Score=28.26 Aligned_cols=74 Identities=11% Similarity=0.053 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH--CCCCCCHHHHH
Q 036107 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS--KGIVPQESTHK 410 (441)
Q Consensus 336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~--~~~~p~~~~~~ 410 (441)
++..-..|..+|.+.+|.++-++..... ..+...+-.++..+...|+--.+.+-++.+.+-.+ .|+..+...++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 5666678888999999999888876543 44566677788888888886666554554444333 47777766554
No 315
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.92 E-value=1.5e+02 Score=30.67 Aligned_cols=84 Identities=10% Similarity=0.047 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036107 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416 (441)
Q Consensus 337 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~ 416 (441)
+--+.-+...|+..+|.++-.+++ .||-.-|.-=+.+++..+++++-++ .-.. +-++.=|.=.+.+|
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLek---fAks------kksPIGy~PFVe~c 754 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEK---FAKS------KKSPIGYLPFVEAC 754 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHH---HHhc------cCCCCCchhHHHHH
Confidence 334444455555555555555443 4555555555566666666555332 1111 11133455556677
Q ss_pred HhcCCccHHHHHHHHHH
Q 036107 417 EKKSLGNAKERIDELLT 433 (441)
Q Consensus 417 ~~~g~~~~a~~~~~~m~ 433 (441)
.+.|+.++|.+.+.+..
T Consensus 755 ~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HhcccHHHHhhhhhccC
Confidence 77777777777665543
No 316
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=68.89 E-value=22 Score=22.19 Aligned_cols=31 Identities=10% Similarity=0.076 Sum_probs=15.1
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 036107 224 KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI 254 (441)
Q Consensus 224 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 254 (441)
+.|-+.++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555554444444443
No 317
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.63 E-value=1.4e+02 Score=30.22 Aligned_cols=187 Identities=12% Similarity=0.070 Sum_probs=100.6
Q ss_pred hchhhHHHHHhhhcCchhhHHHHHHHHHhc-CCChHHHHHHHhhhhhHhh----hhcCCCCCCHHHHHHHHHHHHcCC--
Q 036107 72 LNEQSRISSHALSEDHETDVDKVSEILRKR-YPSPDKVVEALKCFCFTWA----KTQTGYMHTPETYNAMVEALGKSK-- 144 (441)
Q Consensus 72 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~----~~~~g~~p~~~~y~~li~~~~~~~-- 144 (441)
...+...++...+.|....-..+..+.... ++...+++.|+..|...-. ....| ++...+-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 345677777777777555544555555566 7788888888888864433 11123 2234444455555432
Q ss_pred ---ChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHh---cCCHHHHHHHHHHhhhCCCCcHHHHHHH
Q 036107 145 ---KFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK---RNSVAHAYKVFLKFKDCISLSSQIFDVL 218 (441)
Q Consensus 145 ---~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l 218 (441)
+.+.|+.++......+ ++..--.+...+.. ..+...|.++|...-....+...-+-++
T Consensus 305 ~~~d~~~A~~~~~~aA~~g----------------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~ 368 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG----------------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLAL 368 (552)
T ss_pred ccccHHHHHHHHHHHHhcC----------------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 5566888887777755 11111112222211 2456778888877633223333333333
Q ss_pred HHHHH--hcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036107 219 IHGWC--KTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279 (441)
Q Consensus 219 i~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 279 (441)
+.... ...+.+.|..++.+..+.| .|...---..+..+.. +.++.+.-.+..+.+.|.+
T Consensus 369 ~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 369 CYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 22222 3346777777777777776 2332222222333333 6666666666666665543
No 318
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=68.52 E-value=9.2 Score=21.71 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAY 198 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~ 198 (441)
+..+|+.+-..|...|+.++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 7889999999999999999886
No 319
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=68.44 E-value=1.1e+02 Score=29.13 Aligned_cols=177 Identities=12% Similarity=-0.004 Sum_probs=107.2
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHH--HhcCCHHHHHHHHHHHhhCCCCCCHhhH-------------H
Q 036107 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGW--CKTRKSDYAQKAMKEMFQHGFSPDGVSY-------------T 251 (441)
Q Consensus 187 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~-------------~ 251 (441)
.+...|+.++|.++-..+.+--..+ .+..++++. --.++.+.+..-|++-...+ |+-..- .
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATN--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccch--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 3455688888887776653311222 244444433 34567888888888776643 443221 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 036107 252 CFIEHYCREKDFRKVDYTLKEMQEK---GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS 328 (441)
Q Consensus 252 ~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (441)
.--+-..+.|.+..|.+.+.+-... +++|++..|...-....+.|+..+|..--++..+. |. ..|.+|.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~----syikall 325 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DS----SYIKALL 325 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CH----HHHHHHH
Confidence 1122245788999999999987653 67788888988888999999999998776666553 22 2233322
Q ss_pred hcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCh
Q 036107 329 KAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP-DCETHARSLKMCCHKKRM 384 (441)
Q Consensus 329 ~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~ 384 (441)
+. -.++...+++++|.+-|++..+....+ ...|+.....++-+..+.
T Consensus 326 ~r---------a~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRk 373 (486)
T KOG0550|consen 326 RR---------ANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRK 373 (486)
T ss_pred HH---------HHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhh
Confidence 22 234455577888888887755433222 233555555555444443
No 320
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=68.34 E-value=85 Score=29.87 Aligned_cols=131 Identities=13% Similarity=-0.016 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHh----hh-CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CCCHh
Q 036107 180 AMSVLMDTLVKRNSVAHAYKVFLKF----KD-CI-SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GF-SPDGV 248 (441)
Q Consensus 180 ~~~~li~~~~~~g~~~~a~~~~~~~----~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~ 248 (441)
.|..|-+.|--.|+++.|+...+.- ++ |- ..-...+..|-++++-.|+++.|.+.|+.-... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4444444555568888888776532 11 21 223456777888888899999998887765422 11 12345
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 249 SYTCFIEHYCREKDFRKVDYTLKEMQE----K-GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~l~~~m~~----~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
+.-+|-++|.-..++++|+..+.+-.. . ...-....|-+|-.++...|..++|..+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 566777778777888888887765321 1 1222456778888888888888888877665443
No 321
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=67.31 E-value=45 Score=27.81 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhhCCCCcHH---H-----HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 194 VAHAYKVFLKFKDCISLSSQ---I-----FDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 194 ~~~a~~~~~~~~~~~~~~~~---~-----~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
++.|+.+++.+++...++.. . --..+-.|.++|.+++|.++++....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 46677777777543333211 1 11223446666666666666666655
No 322
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.96 E-value=73 Score=26.43 Aligned_cols=128 Identities=12% Similarity=0.031 Sum_probs=90.0
Q ss_pred HHhcCCHHHHHHHHHHhhh-C--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh-hHHHHHHH--HHhcC
Q 036107 188 LVKRNSVAHAYKVFLKFKD-C--ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV-SYTCFIEH--YCREK 261 (441)
Q Consensus 188 ~~~~g~~~~a~~~~~~~~~-~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~--~~~~g 261 (441)
+++.+..++|+.-|..+.+ + --|... --..-......|+-..|...|++.-...-.|-+. -...|=.+ +..+|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA-~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLA-RMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHH-HHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 4567889999999999954 2 222211 1112334577899999999999998765445443 22222223 35688
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 262 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 316 (441)
.++.+....+-+-..+-+.-...-..|--+-.+.|++.+|.+.|..+.+..-.|.
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 8999998888887776665566667777788899999999999999988655553
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.96 E-value=1.6e+02 Score=30.49 Aligned_cols=147 Identities=12% Similarity=0.101 Sum_probs=75.5
Q ss_pred hhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHH
Q 036107 70 LKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLM 149 (441)
Q Consensus 70 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a 149 (441)
+..++|..+..+....-....+..+...++..+.-.|+.++|-.+.-.+-. -+..-|.--+..+...++....
T Consensus 370 k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-------n~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 370 KKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-------NNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred hHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-------chHHHHHHHHHHhccccccchh
Confidence 334444444333322222212446666677666666777776665522211 1455566666666666555443
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh--------------hh---CCCCcH
Q 036107 150 WELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF--------------KD---CISLSS 212 (441)
Q Consensus 150 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--------------~~---~~~~~~ 212 (441)
..++ +. + + .+.++.+|..++..+.. .+...-.++.... +. ....+.
T Consensus 443 a~~l---Pt-~---~---------~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~ 505 (846)
T KOG2066|consen 443 APYL---PT-G---P---------PRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSEST 505 (846)
T ss_pred hccC---CC-C---C---------cccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccch
Confidence 3321 11 1 1 02266777777777776 3322222222111 11 111222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 213 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
..-..|..-|...++++.|++++-..++
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 2344578888899999999998877754
No 324
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.46 E-value=90 Score=27.30 Aligned_cols=22 Identities=5% Similarity=0.101 Sum_probs=13.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC
Q 036107 258 CREKDFRKVDYTLKEMQEKGCK 279 (441)
Q Consensus 258 ~~~g~~~~a~~l~~~m~~~g~~ 279 (441)
+..+++.+|.++|++.-...+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3455667777777776555443
No 325
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=65.93 E-value=41 Score=33.92 Aligned_cols=74 Identities=9% Similarity=0.183 Sum_probs=56.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh---hhCCCCcHHHHHHHHHHHHhcCCHH------HHHHHHHHHhhCCCCCCHhhHHHH
Q 036107 183 VLMDTLVKRNSVAHAYKVFLKF---KDCISLSSQIFDVLIHGWCKTRKSD------YAQKAMKEMFQHGFSPDGVSYTCF 253 (441)
Q Consensus 183 ~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~g~~p~~~~~~~l 253 (441)
+|+.+|...|++..+.++++.+ .++-+.-...||..|+.+.+.|.++ .|.+++++.. +.-|.-||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 8999999999999999999887 3355555667999999999999865 3444554444 44578888888
Q ss_pred HHHHHh
Q 036107 254 IEHYCR 259 (441)
Q Consensus 254 i~~~~~ 259 (441)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 776554
No 326
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.89 E-value=13 Score=22.80 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 036107 287 IVMHALEKAKQIYEALKVYEKMKSDDC 313 (441)
Q Consensus 287 ~ll~~~~~~~~~~~a~~~~~~m~~~g~ 313 (441)
.+-.+|...|+.+.|.+++++....|-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 366889999999999999999997653
No 327
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.84 E-value=1.3e+02 Score=31.96 Aligned_cols=117 Identities=15% Similarity=0.040 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHhhHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCHHHHH--
Q 036107 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHG---FSPDGVSYTCFIEHYCREKDF--RKVDYTLKEMQEKGCKPSVITCT-- 286 (441)
Q Consensus 214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~--~~a~~l~~~m~~~g~~p~~~~~~-- 286 (441)
-|..|+.-|...|..++|+++|.+....- -.--..-+.-++.-..+.+.. +-+++.-++.......-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 38899999999999999999999987631 011112333455555555543 55555555544321110011111
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 036107 287 ----------IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330 (441)
Q Consensus 287 ----------~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (441)
..+-.|......+-+..+++.+....-.++....+.++..|+..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 12233566677788888888888776677777777777766554
No 328
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=65.35 E-value=48 Score=33.56 Aligned_cols=64 Identities=5% Similarity=-0.119 Sum_probs=28.3
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 245 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
.+...-..++..|.+.|-.+.|.++.+.+-..-. ...-|..-+.-+.++|+...+..+-+.+.+
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455566777777777777777777776644322 234456666667777777666655555543
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=65.11 E-value=71 Score=25.66 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 036107 336 YNTMISSACVRSEEGNALKLRQKIE 360 (441)
Q Consensus 336 ~~~li~~~~~~g~~~~a~~~~~~m~ 360 (441)
|..--......|...++..+.+.+.
T Consensus 96 Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 96 WHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 4443334444444445555555444
No 330
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=64.95 E-value=1.1e+02 Score=28.29 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHhh-----CCCCCCHH
Q 036107 251 TCFIEHYCREKDFRKVDYTLKEMQEK---GCKPSVITCTI--VMHALEKAKQIYEALKVYEKMKS-----DDCLTDTS 318 (441)
Q Consensus 251 ~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~ 318 (441)
..++...-+.+|.++|++.++++.+. .-.|+.+.|.. +..++...|+..++++++++.++ .|++|+.+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 34444455566788888888887653 34556666543 44556677888888888888776 67777544
No 331
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=64.78 E-value=21 Score=19.54 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhc
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELS 160 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~ 160 (441)
..|..+-..+.+.|++++|++.|++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 456677788899999999999999987754
No 332
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.64 E-value=1.1e+02 Score=27.44 Aligned_cols=188 Identities=11% Similarity=0.074 Sum_probs=107.6
Q ss_pred hcCCHHHHHHHHHHhhh----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCC--CCHhhHHHHHHHHHhc
Q 036107 190 KRNSVAHAYKVFLKFKD----CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH---GFS--PDGVSYTCFIEHYCRE 260 (441)
Q Consensus 190 ~~g~~~~a~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~--p~~~~~~~li~~~~~~ 260 (441)
+...+++|+.-|+.+-+ ...+.-...-.+|..+.+.+++++....|.+|... .+. -+..+.|++++.-+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34578899999987622 22334444556788999999999999999988631 121 2345778888877776
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCCHHHHHHHHHHHHhcC
Q 036107 261 KDFRKVDYTLKEMQEK-----GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD----DCLTDTSFYSSLIFILSKAV 331 (441)
Q Consensus 261 g~~~~a~~l~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~li~~~~~~g 331 (441)
.+.+-....++.-.+. +-..--.|-+.|-..|...+++.+..+++.++..+ .-..|..--+.++.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLE------ 192 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLE------ 192 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhh------
Confidence 6666555555443221 11111223345666677788888888888887542 11222222222222
Q ss_pred ccchHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH-----hcCChhhH
Q 036107 332 RFLIYNTMISSACVRSEEGNALKLRQKIEE-DSCKPDCETHARSLKMCC-----HKKRMKDG 387 (441)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~-----~~g~~~~a 387 (441)
+|..=|..|-...+-.+-..++++... ....|.+.... +|+-|. +.|++++|
T Consensus 193 ---iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~A 250 (440)
T KOG1464|consen 193 ---IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKA 250 (440)
T ss_pred ---hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHH
Confidence 255556666666555555556665442 23345554443 445443 33555554
No 333
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=64.40 E-value=84 Score=26.48 Aligned_cols=95 Identities=12% Similarity=0.037 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHhhHHHHHH-HHHhcCC--HHHHHHHHHHHHHcCCCCCH-------
Q 036107 215 FDVLIHGWCKTRKSDYAQKAMKEMFQH--GFSPDGVSYTCFIE-HYCREKD--FRKVDYTLKEMQEKGCKPSV------- 282 (441)
Q Consensus 215 ~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~-~~~~~g~--~~~a~~l~~~m~~~g~~p~~------- 282 (441)
++...-.....|++++|.+-++++.+. .++.-...|..+.. +++..+. +-+|..++..+...++ |+.
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~-ps~~EL~V~~ 110 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRL-PSPEELGVPP 110 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCC-CCHHHcCCCH
Confidence 444444455667777777766666432 12222344555555 5555543 5667666766655432 221
Q ss_pred HHH-HHHHHH----------HHhcCCHHHHHHHHHHHhh
Q 036107 283 ITC-TIVMHA----------LEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 283 ~~~-~~ll~~----------~~~~~~~~~a~~~~~~m~~ 310 (441)
..| +.+.++ ..+.|+++.|+++++-|.+
T Consensus 111 ~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 111 IAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 112 111111 2356889999999888875
No 334
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.24 E-value=27 Score=27.05 Aligned_cols=42 Identities=10% Similarity=0.208 Sum_probs=26.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 036107 355 LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396 (441)
Q Consensus 355 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 396 (441)
-+.......+.|+......-+++|.+.+++..|.++++.++.
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444556677777777777777777777777665554443
No 335
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.95 E-value=1.1e+02 Score=27.63 Aligned_cols=87 Identities=13% Similarity=0.131 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHh---hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107 182 SVLMDTLVKRNSVAHAYKVFLKF---KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258 (441)
Q Consensus 182 ~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 258 (441)
..=|.+++.-+++.+++...-+. .++++|.+ ...-|-.|+|.+.+..+.++-..-.+.--.-+...|.++..-|.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 34478888888888888766544 34566655 44455667888888888887777665422233445777666555
Q ss_pred h-----cCCHHHHHHHH
Q 036107 259 R-----EKDFRKVDYTL 270 (441)
Q Consensus 259 ~-----~g~~~~a~~l~ 270 (441)
. .|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 4 68888888877
No 336
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=63.55 E-value=7.8 Score=30.22 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=19.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCH
Q 036107 295 AKQIYEALKVYEKMKSDDCLTDT 317 (441)
Q Consensus 295 ~~~~~~a~~~~~~m~~~g~~~~~ 317 (441)
.|.-.+|-.+|..|.+.|-+||.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc
Confidence 36667788999999999999976
No 337
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.15 E-value=25 Score=29.64 Aligned_cols=35 Identities=9% Similarity=-0.114 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107 401 GIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA 435 (441)
Q Consensus 401 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 435 (441)
...|+..+|..++.++...|+.++|.++.+++...
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45667777777777777777777776666666543
No 338
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.25 E-value=56 Score=26.14 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=48.7
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036107 303 KVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382 (441)
Q Consensus 303 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 382 (441)
++.+.+.+.|++++.. =..++..+...++.-.|.++++++.+.+...+..|.-..++.+...|
T Consensus 7 ~~~~~lk~~glr~T~q-----------------R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-----------------RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-----------------HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3455666777777654 55667777777777888888888888777777777777778888777
Q ss_pred Chhh
Q 036107 383 RMKD 386 (441)
Q Consensus 383 ~~~~ 386 (441)
-+..
T Consensus 70 lv~~ 73 (145)
T COG0735 70 LVHR 73 (145)
T ss_pred CEEE
Confidence 6654
No 339
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=61.37 E-value=8.2 Score=30.11 Aligned_cols=29 Identities=17% Similarity=0.440 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256 (441)
Q Consensus 226 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 256 (441)
|.-..|..+|..|...|-+||. |+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 4445566666666666666654 5555554
No 340
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=61.24 E-value=15 Score=19.27 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=8.4
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 036107 184 LMDTLVKRNSVAHAYKVF 201 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~ 201 (441)
+-.++...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444445555554444
No 341
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=61.18 E-value=1.6e+02 Score=28.23 Aligned_cols=161 Identities=9% Similarity=0.003 Sum_probs=95.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc
Q 036107 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA--LEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF 333 (441)
Q Consensus 256 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 333 (441)
++...|+.++|.+.--...+..- ...+..++++ +.-.++.+.+...|++-...+ |+...-.++-.+.-+.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~l--- 249 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKL--- 249 (486)
T ss_pred hhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHH---
Confidence 34567888888887777666421 2233344433 445677888888888877653 4433222221111111
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHH-H
Q 036107 334 LIYNTMISSACVRSEEGNALKLRQKIEE---DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST-H 409 (441)
Q Consensus 334 ~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~-~ 409 (441)
..|..=-+-..+.|++..|.+.|.+-+. ..++|+...|...-....+.|+..+|.. -..+ -...|..- .
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eais---dc~~----Al~iD~syik 322 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAIS---DCNE----ALKIDSSYIK 322 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhh---hhhh----hhhcCHHHHH
Confidence 2244444556789999999999998764 3467777788877788888999999844 3333 22334332 2
Q ss_pred HHHHHH--HHhcCCccHHHHHHHH
Q 036107 410 KMLAEE--LEKKSLGNAKERIDEL 431 (441)
Q Consensus 410 ~~ll~~--~~~~g~~~~a~~~~~~ 431 (441)
..+.++ +...+.|++|.+-++.
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 2345677777666555
No 342
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.05 E-value=46 Score=28.07 Aligned_cols=32 Identities=16% Similarity=0.109 Sum_probs=16.2
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036107 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275 (441)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 275 (441)
.|+..+|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555555555555555544443
No 343
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=60.96 E-value=55 Score=33.10 Aligned_cols=80 Identities=8% Similarity=0.007 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH-HHHCCCCCCHHHHHHHH
Q 036107 337 NTMISSACVRSEEGNALKLRQKIEE--DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE-MLSKGIVPQESTHKMLA 413 (441)
Q Consensus 337 ~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~-m~~~~~~p~~~~~~~ll 413 (441)
-+++.+|..+|++..+.++++.+.. .|-+.-...||..|+...+.|.++.-.- .+-..+ ++..-+.-|..||..|+
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~-~~~~~~~lq~a~ln~d~~t~all~ 110 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDV-LSNAKELLQQARLNGDSLTYALLC 110 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHH-HHHHHHHHHHhhcCCcchHHHHHH
Confidence 3788999999999999999999874 4555556678888999999998765432 222222 22335677888888877
Q ss_pred HHHH
Q 036107 414 EELE 417 (441)
Q Consensus 414 ~~~~ 417 (441)
.+-.
T Consensus 111 ~~sl 114 (1117)
T COG5108 111 QASL 114 (1117)
T ss_pred Hhhc
Confidence 7653
No 344
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=60.88 E-value=96 Score=25.71 Aligned_cols=194 Identities=14% Similarity=0.018 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhh--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 255 (441)
...+......+...+.+..+...+..... ........+......+...+....+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 46777778888888999999888877643 345566667777777888888899999998887653333 122223333
Q ss_pred -HHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc
Q 036107 256 -HYCREKDFRKVDYTLKEMQEKGC--KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332 (441)
Q Consensus 256 -~~~~~g~~~~a~~l~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 332 (441)
.+...|+++.+...+.+...... ......+......+...++.+.+...+............
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------- 202 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDA--------------- 202 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccch---------------
Confidence 68889999999999999855221 123444555555577888999999999888875432112
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHH
Q 036107 333 FLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD-CETHARSLKMCCHKKRMKDGMLV 390 (441)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~ 390 (441)
..+..+-..+...++.+.|...+...... .|+ ...+..+...+...+..+.+...
T Consensus 203 -~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (291)
T COG0457 203 -EALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEA 258 (291)
T ss_pred -HHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHH
Confidence 22666667777777888888888887754 333 33444444444466667777553
No 345
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=59.43 E-value=1e+02 Score=30.02 Aligned_cols=117 Identities=7% Similarity=0.074 Sum_probs=71.0
Q ss_pred hcCCHHHH-HHHHHHhhh-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 036107 190 KRNSVAHA-YKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVD 267 (441)
Q Consensus 190 ~~g~~~~a-~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 267 (441)
..|++-.| .++|..++. .-.|+....-+. .+...|+++.+.+.+...... +.....+..+++....+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 34555544 345555533 223444333333 345668888888877665432 3345667788888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 268 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
.+-..|....+. +...........-..|-++++.-.|++...
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 888888776665 333333333333445667777777777644
No 346
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=59.31 E-value=72 Score=24.78 Aligned_cols=47 Identities=17% Similarity=0.301 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 230 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
+..+-++.+....+.|++.....-+.+|.+.+|+-.|.++|+-++..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45556666666677777777777777777777777777777777654
No 347
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.18 E-value=2.1e+02 Score=28.99 Aligned_cols=173 Identities=13% Similarity=0.052 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhhhCCCCcHHHHHHHH--HH-HHhcCCHHHHHHHHHHHhh-------CCCCCCHhhHHHHHHHHHhcC--
Q 036107 194 VAHAYKVFLKFKDCISLSSQIFDVLI--HG-WCKTRKSDYAQKAMKEMFQ-------HGFSPDGVSYTCFIEHYCREK-- 261 (441)
Q Consensus 194 ~~~a~~~~~~~~~~~~~~~~~~~~li--~~-~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g-- 261 (441)
...|..+++...+.-.......-.++ .+ +....+.+.|..+|+...+ .| +.....-+-..|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45777788776432222222222233 33 5577899999999999877 55 3345556666666643
Q ss_pred ---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHH
Q 036107 262 ---DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK-AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337 (441)
Q Consensus 262 ---~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~ 337 (441)
+.+.|..++..--+.|.+ +...+-..+.-... ..+...|.++|......|..+-.. +-
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~-----------------~l 366 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIY-----------------RL 366 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHH-----------------HH
Confidence 667799999998888764 65555444433333 356789999999998888644221 11
Q ss_pred HHH--HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 036107 338 TMI--SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389 (441)
Q Consensus 338 ~li--~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 389 (441)
+++ .+.....+.+.|..++++.-+.| .|-..--...+..+.. +.++.+.-
T Consensus 367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~ 418 (552)
T KOG1550|consen 367 ALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALA 418 (552)
T ss_pred HHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHH
Confidence 111 11112335667777777777666 3332222233333333 55555543
No 348
>PF13934 ELYS: Nuclear pore complex assembly
Probab=58.85 E-value=1.2e+02 Score=26.34 Aligned_cols=104 Identities=12% Similarity=0.102 Sum_probs=59.0
Q ss_pred HHHHHHHHHH--cCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107 132 TYNAMVEALG--KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209 (441)
Q Consensus 132 ~y~~li~~~~--~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 209 (441)
.|-..|.++. ..+++++|.+.+-.- .. .+.--.-++.++...|+.+.|..++...+....
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p-----s~-------------~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~ 139 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP-----SL-------------IPWFPDKILQALLRRGDPKLALRYLRAVGPPLS 139 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC-----CC-------------CcccHHHHHHHHHHCCChhHHHHHHHhcCCCCC
Confidence 4555566654 446777777776332 11 111112366777778888888888888753221
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 258 (441)
+...-..++.. ..++.+.+|+.+-+...+. -....+..++..+.
T Consensus 140 -s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 140 -SPEALTLYFVA-LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCL 183 (226)
T ss_pred -CHHHHHHHHHH-HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHH
Confidence 11223333334 5567888888777666542 11346666666665
No 349
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.60 E-value=77 Score=28.44 Aligned_cols=89 Identities=10% Similarity=-0.075 Sum_probs=54.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036107 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417 (441)
Q Consensus 338 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~ 417 (441)
.=|.+++.-|++.+++...-+--+..-+.-......-|-.|++.++...+.++-+.+-+-..+.-.|+ |..+...|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~---y~~vaELyL 164 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPE---YGTVAELYL 164 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchh---hHHHHHHHH
Confidence 34677888888888777655544322233334445556667788888888776665555322323333 666665554
Q ss_pred -----hcCCccHHHHHH
Q 036107 418 -----KKSLGNAKERID 429 (441)
Q Consensus 418 -----~~g~~~~a~~~~ 429 (441)
-.|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 468888888776
No 350
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=58.17 E-value=30 Score=19.01 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 284 TCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
+|..+-..|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455556666677777777777766544
No 351
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=58.15 E-value=1.2e+02 Score=25.85 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 214 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
..+.+++.+.-.|+++.|.+.|.-+.+
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR 69 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIR 69 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 344555666666666666666665554
No 352
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=56.87 E-value=1.1e+02 Score=25.25 Aligned_cols=223 Identities=12% Similarity=-0.001 Sum_probs=147.8
Q ss_pred cCCHHHHHHHHHHhhhCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHhhHHHHHHHHHhcCCHHHHH
Q 036107 191 RNSVAHAYKVFLKFKDCISL--SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH-GFSPDGVSYTCFIEHYCREKDFRKVD 267 (441)
Q Consensus 191 ~g~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~ 267 (441)
.+....+...+......... ....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35555555555554332222 3567888888899999999999998888753 23445667777778888888899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCccchHHHHHHHHH
Q 036107 268 YTLKEMQEKGCKPSVITCTIVMH-ALEKAKQIYEALKVYEKMKSDDCLTD--TSFYSSLIFILSKAVRFLIYNTMISSAC 344 (441)
Q Consensus 268 ~l~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~~~~li~~~~ 344 (441)
+.+.........+. ........ .+...|+++.+...+..... ..|. ... ..+......+.
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~--------------~~~~~~~~~~~ 178 (291)
T COG0457 116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE--LDPELNELA--------------EALLALGALLE 178 (291)
T ss_pred HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchH--------------HHHHHhhhHHH
Confidence 99999887654432 22222233 78999999999999999855 2221 111 11333333467
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcc
Q 036107 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEELEKKSLGN 423 (441)
Q Consensus 345 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~ 423 (441)
..++.+.+...+..............+..+-..+...+.++.+...+..... ..|+ ...+..+...+...+..+
T Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 253 (291)
T COG0457 179 ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE-----LDPDNAEALYNLALLLLELGRYE 253 (291)
T ss_pred HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh-----hCcccHHHHhhHHHHHHHcCCHH
Confidence 7889999999999987643221467778888888888888888664333322 3343 444555555555677788
Q ss_pred HHHHHHHHHHHH
Q 036107 424 AKERIDELLTHA 435 (441)
Q Consensus 424 ~a~~~~~~m~~~ 435 (441)
++...++...+.
T Consensus 254 ~~~~~~~~~~~~ 265 (291)
T COG0457 254 EALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHh
Confidence 888777765544
No 353
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=55.21 E-value=27 Score=31.61 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036107 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCK 279 (441)
Q Consensus 251 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 279 (441)
+.-|....+.||+++|+++++|.++.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 35555555555555555555555555554
No 354
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.13 E-value=1.9e+02 Score=28.95 Aligned_cols=86 Identities=10% Similarity=0.166 Sum_probs=57.8
Q ss_pred cCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036107 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFL 202 (441)
Q Consensus 123 ~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 202 (441)
..|+..+......++... .|+...|..++++....+.+..+...+..++...+....-.++.++.. |+.+.+..+++
T Consensus 193 ~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~~~~ 269 (509)
T PRK14958 193 EENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLGCVT 269 (509)
T ss_pred HcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 346666666666655443 588888988888876655456666666666666667776777776665 77778888887
Q ss_pred Hh-hhCCCCc
Q 036107 203 KF-KDCISLS 211 (441)
Q Consensus 203 ~~-~~~~~~~ 211 (441)
.+ ..|..|.
T Consensus 270 ~l~~~g~~~~ 279 (509)
T PRK14958 270 RLVEQGVDFS 279 (509)
T ss_pred HHHHcCCCHH
Confidence 77 3355544
No 355
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=52.93 E-value=29 Score=18.76 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 287 IVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 287 ~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
.+-.++.+.|++++|.++|+++.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445566677777777777777653
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=52.86 E-value=45 Score=23.43 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=34.8
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHH
Q 036107 294 KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356 (441)
Q Consensus 294 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~ 356 (441)
...+.++|...|....++-..+.... .+...++.+|+.-|++.++++.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf--------------~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRF--------------RVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788899999998887644443221 44777788888888888777653
No 357
>PRK11906 transcriptional regulator; Provisional
Probab=52.86 E-value=2.3e+02 Score=27.61 Aligned_cols=130 Identities=9% Similarity=-0.006 Sum_probs=83.3
Q ss_pred HHH--HHHHHHHHhc-----CCHHHHHHHHHHhh--hCCCCc-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHh
Q 036107 179 RAM--SVLMDTLVKR-----NSVAHAYKVFLKFK--DCISLS-SQIFDVLIHGWCK---------TRKSDYAQKAMKEMF 239 (441)
Q Consensus 179 ~~~--~~li~~~~~~-----g~~~~a~~~~~~~~--~~~~~~-~~~~~~li~~~~~---------~~~~~~a~~~~~~m~ 239 (441)
..| ...+.+.... -..+.|+.+|.+.- +...|+ ...|..+-.++.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5566655542 34567888888874 233443 4444444333321 234556777777776
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS-VITCTIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 240 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
+.+ .-|......+-.+....++++.|..+|++....+ || ..+|...--.+.-+|+.++|.+.+++..+.
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 654 2366777777777788888999999999987753 44 344444444566789999999999986553
No 358
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=52.56 E-value=2.3e+02 Score=27.65 Aligned_cols=89 Identities=11% Similarity=0.010 Sum_probs=67.0
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 036107 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266 (441)
Q Consensus 187 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 266 (441)
.....|.+|.+.........-+.....+-..+++...+.|+++.|..+-+-|....++ |....+..-...-..|-+|++
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 3456799999999988887766677778899999999999999999999988877665 333333333334456778888
Q ss_pred HHHHHHHHHc
Q 036107 267 DYTLKEMQEK 276 (441)
Q Consensus 267 ~~l~~~m~~~ 276 (441)
.-.++++...
T Consensus 411 ~~~wk~~~~~ 420 (831)
T PRK15180 411 YHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhcc
Confidence 8888887543
No 359
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=52.34 E-value=1.6e+02 Score=26.82 Aligned_cols=112 Identities=12% Similarity=0.073 Sum_probs=64.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 036107 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261 (441)
Q Consensus 182 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 261 (441)
-.++....+.++.....+.+..++. ...-..-|..+...|++..|+++..+..+. +. +...|+++=+ . ..
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~~-----v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~-L--~~ 171 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIKT-----VQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRH-L--SS 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHH-H--hH
Confidence 3455556666666666666666642 333455677778899999999998888753 10 1111111111 0 11
Q ss_pred CHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036107 262 DFRKVDYTLKEMQEK-----GCKPSVITCTIVMHALEKAKQIYEALK 303 (441)
Q Consensus 262 ~~~~a~~l~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~ 303 (441)
++++.....+++.+. -...|+..|..++.||.-.|+...+.+
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 233333333333322 124688899999999998887766553
No 360
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.81 E-value=2.9e+02 Score=28.78 Aligned_cols=149 Identities=11% Similarity=0.100 Sum_probs=83.7
Q ss_pred cCCChHHHHHHHhhhhhHhhhhcCCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcC
Q 036107 101 RYPSPDKVVEALKCFCFTWAKTQTGYMH---TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD 177 (441)
Q Consensus 101 ~~~~~g~~~~A~~~~~~~~~~~~~g~~p---~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~ 177 (441)
...+.+..++|+.+- ....|..| -...+...|.-+.-.|++++|-...-.|.. + +
T Consensus 365 Wll~~k~yeeAl~~~-----k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-n----------------~ 422 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAA-----KASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-N----------------N 422 (846)
T ss_pred HHHHhhHHHHHHHHH-----HhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-c----------------h
Confidence 344556667776655 23445555 245778888888888888888888777765 2 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---------CCCCC--
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ---------HGFSP-- 245 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---------~g~~p-- 245 (441)
..-|.--+..+...++.... +.-++.+ -+.+..+|..++..|.. .+...-.++..+-.. .-+.|
T Consensus 423 ~~eWe~~V~~f~e~~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~ 498 (846)
T KOG2066|consen 423 AAEWELWVFKFAELDQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQI 498 (846)
T ss_pred HHHHHHHHHHhccccccchh---hccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHH
Confidence 45555555566665555433 3333222 12344568888888877 333322222221110 00111
Q ss_pred -----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036107 246 -----DGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275 (441)
Q Consensus 246 -----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 275 (441)
+...-..|..-|...+++..|+.++-..++
T Consensus 499 ~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 499 KQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HhhccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 112223466677778888888887776654
No 361
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=51.50 E-value=77 Score=25.37 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=18.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036107 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294 (441)
Q Consensus 253 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 294 (441)
++....+.++.-.|.++++++++.+...+..|.-..++.+..
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e 67 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEE 67 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHH
Confidence 333444444444455555555544444444443333333333
No 362
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=51.41 E-value=2.8e+02 Score=28.15 Aligned_cols=163 Identities=10% Similarity=0.128 Sum_probs=95.0
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 289 (441)
+....|..|++.+... +.+.-.+++.++.. .+ ...+..++++....|......-+.+.+....+. +...-..+.
T Consensus 308 ~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~---~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~-~~ea~~~~~ 381 (574)
T smart00638 308 PAAAKFLRLVRLLRTL-SEEQLEQLWRQLYE---KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT-PLEAAQLLA 381 (574)
T ss_pred chHHHHHHHHHHHHhC-CHHHHHHHHHHHHh---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC-HHHHHHHHH
Confidence 4566677777765544 67778888888764 12 678899999999999877777777777665554 333333333
Q ss_pred HHH--HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCCh------hHHHHHHHHHHH
Q 036107 290 HAL--EKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEE------GNALKLRQKIEE 361 (441)
Q Consensus 290 ~~~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~ 361 (441)
.+. .+.-..+-...+++-+......+....+.+.+-+ |.+++..+|..... ++..+.+.+...
T Consensus 382 ~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~---------~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~ 452 (574)
T smart00638 382 VLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLA---------YGSLVRRYCVNTPSCPDFVLEELLKYLHELLQ 452 (574)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHH---------HHHHHHHHhcCCCCCChhhHHHHHHHHHHHHH
Confidence 333 3344555555555555556667776666555555 66666666655432 334444443322
Q ss_pred cCC-CCCHHHHHHHHHHHHhcCChhhH
Q 036107 362 DSC-KPDCETHARSLKMCCHKKRMKDG 387 (441)
Q Consensus 362 ~g~-~p~~~t~~~li~~~~~~g~~~~a 387 (441)
... .-|..--...|+++++.|.....
T Consensus 453 ~~~~~~~~~~~~~~LkaLGN~g~~~~i 479 (574)
T smart00638 453 QAVSKGDEEEIQLYLKALGNAGHPSSI 479 (574)
T ss_pred HHHhcCCchheeeHHHhhhccCChhHH
Confidence 211 11222234457777777765543
No 363
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=51.19 E-value=1e+02 Score=22.97 Aligned_cols=79 Identities=10% Similarity=-0.001 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036107 193 SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272 (441)
Q Consensus 193 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 272 (441)
..++|..+-+.+...-.....+--+-+..+...|++++|.++.+.+. -||...|-++-. .+.|-.+++..-+..
T Consensus 20 cHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 20 CHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 34555555555533211122222222344556667777766666552 466666655543 345555555555555
Q ss_pred HHHcC
Q 036107 273 MQEKG 277 (441)
Q Consensus 273 m~~~g 277 (441)
|...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 55554
No 364
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=51.00 E-value=71 Score=21.21 Aligned_cols=49 Identities=12% Similarity=0.051 Sum_probs=28.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHH
Q 036107 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL-----EKAKQIYEALKVY 305 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~ 305 (441)
+.+.|++-+|.++++++-.....+....+..+|+.. .+.|+...|..++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 345677777777777776543334555666666543 3456666666553
No 365
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=50.98 E-value=1e+02 Score=23.05 Aligned_cols=20 Identities=10% Similarity=0.164 Sum_probs=8.9
Q ss_pred HHHHHhcCCHHHHHHHHHHh
Q 036107 185 MDTLVKRNSVAHAYKVFLKF 204 (441)
Q Consensus 185 i~~~~~~g~~~~a~~~~~~~ 204 (441)
+..|...|+.++|..-+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444445555555544444
No 366
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.48 E-value=93 Score=22.38 Aligned_cols=16 Identities=6% Similarity=0.046 Sum_probs=8.3
Q ss_pred hcCCHHHHHHHHHHHh
Q 036107 294 KAKQIYEALKVYEKMK 309 (441)
Q Consensus 294 ~~~~~~~a~~~~~~m~ 309 (441)
..|+.+.|.+++..+.
T Consensus 48 ~~g~~~~ar~LL~~L~ 63 (88)
T cd08819 48 NHGNESGARELLKRIV 63 (88)
T ss_pred ccCcHHHHHHHHHHhc
Confidence 3355555555555555
No 367
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.67 E-value=47 Score=22.00 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=9.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 036107 252 CFIEHYCREKDFRKVDYTLKEM 273 (441)
Q Consensus 252 ~li~~~~~~g~~~~a~~l~~~m 273 (441)
.+|.++...|++++|.+.++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444444444444443
No 368
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=49.27 E-value=1.8e+02 Score=25.30 Aligned_cols=110 Identities=11% Similarity=0.114 Sum_probs=58.5
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHH
Q 036107 118 TWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHA 197 (441)
Q Consensus 118 ~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 197 (441)
.|......+.++..-+|.||--|.-...+.+|-+.|..=....+...+ .+...-..-|......|+++.|
T Consensus 14 ~w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d----------~~~~~eR~~Ir~~I~~G~Ie~A 83 (228)
T KOG2659|consen 14 EWEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSID----------LDSMDERLQIRRAIEEGQIEEA 83 (228)
T ss_pred hhHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCc----------hhhHhHHHHHHHHHHhccHHHH
Confidence 344555556666667777666666665555555555442221110111 1233334566677788888888
Q ss_pred HHHHHHh-hhCCCCcHHHHHHHH----HHHHhcCCHHHHHHHHHH
Q 036107 198 YKVFLKF-KDCISLSSQIFDVLI----HGWCKTRKSDYAQKAMKE 237 (441)
Q Consensus 198 ~~~~~~~-~~~~~~~~~~~~~li----~~~~~~~~~~~a~~~~~~ 237 (441)
.+..+.+ +.-+..|...+-.|. --..+.|..++|++..+.
T Consensus 84 ie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 84 IEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 8888777 333344433332222 123455666666665544
No 369
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=48.96 E-value=86 Score=25.85 Aligned_cols=59 Identities=8% Similarity=-0.081 Sum_probs=29.8
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 036107 239 FQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298 (441)
Q Consensus 239 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 298 (441)
++.|++++..-. .++......++.-.|.++++.+.+.+..++..|..-.|..+.+.|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344554444322 33333333444455666666666665555555555555555555544
No 370
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=48.91 E-value=67 Score=22.59 Aligned_cols=15 Identities=0% Similarity=-0.086 Sum_probs=6.9
Q ss_pred HHhcCCHHHHHHHHH
Q 036107 188 LVKRNSVAHAYKVFL 202 (441)
Q Consensus 188 ~~~~g~~~~a~~~~~ 202 (441)
.++.|+++-...+.+
T Consensus 4 A~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 4 AAQNGNLEILKFLLE 18 (89)
T ss_dssp HHHTTTHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 344455544444444
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=47.30 E-value=61 Score=22.80 Aligned_cols=54 Identities=6% Similarity=-0.024 Sum_probs=37.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036107 136 MVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF 201 (441)
Q Consensus 136 li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 201 (441)
.+..| ..++.++|+..|....+.....+. --.++..++.+++.-|++++++++-
T Consensus 13 GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~-----------rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 13 GLKLY-HQNETQQALQKWRKALEKITDRED-----------RFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHh-ccchHHHHHHHHHHHHhhcCChHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 667888899999988775423221 2357778889999999998887764
No 372
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=47.15 E-value=3.7e+02 Score=28.32 Aligned_cols=82 Identities=12% Similarity=-0.035 Sum_probs=48.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh--hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036107 344 CVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM--KDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSL 421 (441)
Q Consensus 344 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~--~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 421 (441)
++.++++.|+..+.+|.+.|..|....=..++.+...-|.. ....-+...+.....-|++--.....-..-.++.+-.
T Consensus 269 irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~laq~~~~la~apK 348 (725)
T PRK13341 269 LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLAQAALYLATAPK 348 (725)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCC
Confidence 35688999999999999999999877666666666566653 2222222233333334654333344444444455555
Q ss_pred ccHH
Q 036107 422 GNAK 425 (441)
Q Consensus 422 ~~~a 425 (441)
-..+
T Consensus 349 Sns~ 352 (725)
T PRK13341 349 SNSV 352 (725)
T ss_pred ccHH
Confidence 5555
No 373
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=47.02 E-value=1.3e+02 Score=24.75 Aligned_cols=51 Identities=12% Similarity=0.053 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 036107 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDG 387 (441)
Q Consensus 337 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 387 (441)
..++..+...++.-.|.++++.+.+.+..++..|.-..|..+...|-+.+.
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 445555555566678999999999988888888888888888888877653
No 374
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.04 E-value=1.3e+02 Score=22.69 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 215 FDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 215 ~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666666554
No 375
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=46.03 E-value=2.4e+02 Score=25.85 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=19.3
Q ss_pred HHHhcCCHHHHHHHH-HHHHHcCCCCCH----HHHHHHHHHHH
Q 036107 256 HYCREKDFRKVDYTL-KEMQEKGCKPSV----ITCTIVMHALE 293 (441)
Q Consensus 256 ~~~~~g~~~~a~~l~-~~m~~~g~~p~~----~~~~~ll~~~~ 293 (441)
-..+...+++..... ++|++.++ |+. ..|..+|++--
T Consensus 264 q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsave 305 (412)
T KOG2297|consen 264 QVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVE 305 (412)
T ss_pred HhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHh
Confidence 334444566655444 44555555 343 35677776543
No 376
>PHA02874 ankyrin repeat protein; Provisional
Probab=45.29 E-value=2.3e+02 Score=27.42 Aligned_cols=50 Identities=6% Similarity=0.092 Sum_probs=23.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCC-CCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 036107 185 MDTLVKRNSVAHAYKVFLKFKDCI-SLSSQIFDVLIHGWCKTRKSDYAQKAM 235 (441)
Q Consensus 185 i~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~ 235 (441)
+..++..|+.+....+++.-...+ ..+.. ..+.+...++.|+.+-+..++
T Consensus 5 l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~-~~tpL~~A~~~g~~~iv~~Ll 55 (434)
T PHA02874 5 LRMCIYSGDIEAIEKIIKNKGNCINISVDE-TTTPLIDAIRSGDAKIVELFI 55 (434)
T ss_pred HHHHHhcCCHHHHHHHHHcCCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHH
Confidence 445566777776666664321111 01111 123334445566665554444
No 377
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=44.69 E-value=66 Score=22.63 Aligned_cols=81 Identities=6% Similarity=-0.009 Sum_probs=41.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCC
Q 036107 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI---TCTIVMHALEKAKQ 297 (441)
Q Consensus 221 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~---~~~~ll~~~~~~~~ 297 (441)
..++.|+++-+..+++ .|...+. -+..+...+..|+. ++++.+.+.|..++.. .++.|.. .+..|+
T Consensus 3 ~A~~~~~~~~~~~ll~----~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~ 71 (89)
T PF12796_consen 3 IAAQNGNLEILKFLLE----KGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHY-AAENGN 71 (89)
T ss_dssp HHHHTTTHHHHHHHHH----TTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTH
T ss_pred HHHHcCCHHHHHHHHH----CcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHH-HHHcCC
Confidence 4566777766655555 3333333 11244455566765 4455555566666543 3344444 344555
Q ss_pred HHHHHHHHHHHhhCCCCCC
Q 036107 298 IYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 298 ~~~a~~~~~~m~~~g~~~~ 316 (441)
.+ +++.+.+.|..++
T Consensus 72 ~~----~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 72 LE----IVKLLLEHGADVN 86 (89)
T ss_dssp HH----HHHHHHHTTT-TT
T ss_pred HH----HHHHHHHcCCCCC
Confidence 44 5566666676664
No 378
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=44.59 E-value=1.4e+02 Score=23.14 Aligned_cols=74 Identities=18% Similarity=0.060 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhhC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036107 194 VAHAYKVFLKFKDC--ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF-QHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270 (441)
Q Consensus 194 ~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~ 270 (441)
+..|+.-+++.... -.++......+|..|--+ ++.+++++++.. ..|+. +..+-..++....+.|-++.....+
T Consensus 6 ~~kAl~~L~ea~~~~~~~~~~~~~dg~IqrFE~t--~ElaWK~lK~~L~~~G~~-~~~spr~~~r~A~~~glI~d~e~Wl 82 (124)
T PF08780_consen 6 FKKALSRLEEALEKYEDPLSELERDGVIQRFEFT--FELAWKTLKDYLEYEGIS-ECNSPRDVFREAFKAGLIDDGEIWL 82 (124)
T ss_dssp HHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCTSS-CCTSHHHHHHHHHHTTSSSHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCc-ccCCHHHHHHHHHHcCCCCCHHHHH
Confidence 34444444444221 345555666666666554 667777777644 34653 3333355555555555544444433
No 379
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.71 E-value=3.2e+02 Score=26.99 Aligned_cols=36 Identities=8% Similarity=0.196 Sum_probs=20.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246 (441)
Q Consensus 211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 246 (441)
+...+..++.+....+....|+.++++|.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 344445555554444445566666666666665554
No 380
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.43 E-value=3.9e+02 Score=27.51 Aligned_cols=85 Identities=12% Similarity=0.137 Sum_probs=57.9
Q ss_pred cCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036107 123 QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFL 202 (441)
Q Consensus 123 ~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 202 (441)
..|+..+......++. .-.|+...++.++++....+....+...+..++...+......++.++.. |+...++.+++
T Consensus 198 ~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~-~d~~~al~~l~ 274 (618)
T PRK14951 198 AENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ-GDGRTVVETAD 274 (618)
T ss_pred HcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 4567667777766665 33588999999888766555455666666666666666666667776666 77888888888
Q ss_pred Hhhh-CCCC
Q 036107 203 KFKD-CISL 210 (441)
Q Consensus 203 ~~~~-~~~~ 210 (441)
.+.. |..+
T Consensus 275 ~l~~~G~~~ 283 (618)
T PRK14951 275 ELRLNGLSA 283 (618)
T ss_pred HHHHcCCCH
Confidence 7733 4443
No 381
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=42.88 E-value=1.9e+02 Score=26.30 Aligned_cols=84 Identities=10% Similarity=0.147 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHH--------H
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKV--------F 201 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~--------~ 201 (441)
...-...|..+...|++..|++++.+....-...... .....|- .++++-... |
T Consensus 127 v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~------------~c~~~L~------~~L~e~~~~i~~~ld~~l 188 (291)
T PF10475_consen 127 VQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGY------------SCVRHLS------SQLQETLELIEEQLDSDL 188 (291)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc------------hHHHHHh------HHHHHHHHHHHHHHHHHH
Confidence 4455666777888999999999999887743111111 1111111 111111111 2
Q ss_pred HHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 036107 202 LKFKDCISLSSQIFDVLIHGWCKTRKSDYAQK 233 (441)
Q Consensus 202 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 233 (441)
..+-. .-|...|..++.+|.-.|+...+.+
T Consensus 189 ~~~~~--~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 189 SKVCQ--DFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHH--hCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 22222 4566679999999988887666553
No 382
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.39 E-value=1e+02 Score=20.44 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKF 204 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~ 204 (441)
|-.---.+|.++...|++++|.+..+.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444445667777777777777776665
No 383
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=42.37 E-value=80 Score=21.25 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=15.6
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 036107 245 PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278 (441)
Q Consensus 245 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 278 (441)
|+...++.++..+++..-.++++..+.+..+.|.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~ 39 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS 39 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344444444444444444444444444444443
No 384
>PHA03100 ankyrin repeat protein; Provisional
Probab=42.05 E-value=2.6e+02 Score=27.44 Aligned_cols=119 Identities=8% Similarity=0.145 Sum_probs=55.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHH--HHHHHHH-----HHhcCCHHHHHHHHHHHhhCCCCCCH---hhHHH
Q 036107 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI--FDVLIHG-----WCKTRKSDYAQKAMKEMFQHGFSPDG---VSYTC 252 (441)
Q Consensus 183 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~li~~-----~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ 252 (441)
+.+...++.|+.+-+..+++. |..++... ..+.+.. .+..|+.+-+ +.+.+.|..++. ...+.
T Consensus 37 t~L~~A~~~~~~~ivk~Ll~~---g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv----~~Ll~~ga~i~~~d~~g~tp 109 (480)
T PHA03100 37 LPLYLAKEARNIDVVKILLDN---GADINSSTKNNSTPLHYLSNIKYNLTDVKEIV----KLLLEYGANVNAPDNNGITP 109 (480)
T ss_pred hhhhhhhccCCHHHHHHHHHc---CCCCCCccccCcCHHHHHHHHHHHhhchHHHH----HHHHHCCCCCCCCCCCCCch
Confidence 445556677777766666543 22222211 1123333 4455554433 333445554432 23444
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCC
Q 036107 253 FIEHYC-REKDFRKVDYTLKEMQEKGCKPSVIT--CTIVMHALEKAK--QIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 253 li~~~~-~~g~~~~a~~l~~~m~~~g~~p~~~~--~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~~~ 316 (441)
+..+.. ..|+.+-+.. +.+.|..++... -...+...++.| +.+ +.+.+.+.|..++
T Consensus 110 L~~A~~~~~~~~~iv~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----iv~~Ll~~g~din 170 (480)
T PHA03100 110 LLYAISKKSNSYSIVEY----LLDNGANVNIKNSDGENLLHLYLESNKIDLK----ILKLLIDKGVDIN 170 (480)
T ss_pred hhHHHhcccChHHHHHH----HHHcCCCCCccCCCCCcHHHHHHHcCCChHH----HHHHHHHCCCCcc
Confidence 444443 5565554443 444555543321 123455555556 443 3444555665554
No 385
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=41.56 E-value=2.4e+02 Score=24.54 Aligned_cols=182 Identities=14% Similarity=0.109 Sum_probs=106.0
Q ss_pred cCCChHHHHHHHhhhhhHhhhhcCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHH
Q 036107 101 RYPSPDKVVEALKCFCFTWAKTQTGYMHT-PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTR 179 (441)
Q Consensus 101 ~~~~~g~~~~A~~~~~~~~~~~~~g~~p~-~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~ 179 (441)
.|-+.|-.+-|+-=| .....+.|+ +..||-+---+...|+++.|.+.|+...+.++..
T Consensus 74 lYDSlGL~~LAR~Df-----tQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---------------- 132 (297)
T COG4785 74 LYDSLGLRALARNDF-----SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------------- 132 (297)
T ss_pred hhhhhhHHHHHhhhh-----hhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc----------------
Confidence 344555444444433 223345566 5688888888899999999999999999877332
Q ss_pred HHHHHHHH--HHhcCCHHHHHHHHHHhhh--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 036107 180 AMSVLMDT--LVKRNSVAHAYKVFLKFKD--CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255 (441)
Q Consensus 180 ~~~~li~~--~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 255 (441)
-|..+=++ +--.|+++.|.+=|...-+ .-.|=...|--++. ..-++.+|..-+.+=-+ ..|..-|...|-
T Consensus 133 ~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV 206 (297)
T COG4785 133 NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KSDKEQWGWNIV 206 (297)
T ss_pred hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hccHhhhhHHHH
Confidence 22222222 2235899999887766622 22333333333332 23356666654433222 245566666665
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 256 HYCREKDFRKVDYTLKEMQEKGCK------PSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 256 ~~~~~g~~~~a~~l~~~m~~~g~~------p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
.+.-. +.. ...+++..+...-. --..||--|-.-+...|+.++|..+|+-....
T Consensus 207 ~~yLg-kiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 207 EFYLG-KIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHh-hcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 55432 221 22334444332111 01357777888889999999999999987764
No 386
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.09 E-value=3.4e+02 Score=26.19 Aligned_cols=95 Identities=12% Similarity=-0.043 Sum_probs=51.7
Q ss_pred HHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHCCCCCCHHHHH
Q 036107 336 YNTMISSACV---RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK--DGMLVLNLMREMLSKGIVPQESTHK 410 (441)
Q Consensus 336 ~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--~a~~~~~~~~~m~~~~~~p~~~~~~ 410 (441)
+..+++++.+ ..+.+.|+..+..|.+.|..|....-..++.++...|..+ ...-+...+.....-|++--.....
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~~l~ 309 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALA 309 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 3344444444 4788999999999999999998776666666666665433 1222222233333345533333333
Q ss_pred HHHHHHHhcCCccHHHHHHH
Q 036107 411 MLAEELEKKSLGNAKERIDE 430 (441)
Q Consensus 411 ~ll~~~~~~g~~~~a~~~~~ 430 (441)
..+-.++.+-.-..+...++
T Consensus 310 ~~~~~l~~~pksn~~~~a~~ 329 (413)
T PRK13342 310 QAVIYLALAPKSNAAYTAIN 329 (413)
T ss_pred HHHHHHHcCCCccHHHHHHH
Confidence 33333444444444444333
No 387
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=41.03 E-value=1.4e+02 Score=21.57 Aligned_cols=66 Identities=9% Similarity=0.002 Sum_probs=37.9
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036107 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302 (441)
Q Consensus 231 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 302 (441)
+.++++.+.+.|+ .+......+-.+--..|+.+.|.+++..+. .| | ..|...++++-..|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhhh
Confidence 4456666666664 234344444443345577777777777776 43 2 34666667666666655443
No 388
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.20 E-value=3.9e+02 Score=26.68 Aligned_cols=89 Identities=9% Similarity=0.110 Sum_probs=45.3
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHH
Q 036107 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354 (441)
Q Consensus 275 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~ 354 (441)
+.|+..+......++... .|++..|..++++....| ....+...+-.+++.... ...-.++.+. ..|+.+.++.
T Consensus 193 ~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~--~~~It~~~V~~~lg~~~~-~~i~~ll~al-~~~d~~~~l~ 266 (509)
T PRK14958 193 EENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYG--NGKVLIADVKTMLGTIEP-LLLFDILEAL-AAKAGDRLLG 266 (509)
T ss_pred HcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcC--CCCcCHHHHHHHHCCCCH-HHHHHHHHHH-HcCCHHHHHH
Confidence 345555544444443332 356666666665554432 112222222222222222 1233344443 3477888999
Q ss_pred HHHHHHHcCCCCCHH
Q 036107 355 LRQKIEEDSCKPDCE 369 (441)
Q Consensus 355 ~~~~m~~~g~~p~~~ 369 (441)
++++|.+.|..|...
T Consensus 267 ~~~~l~~~g~~~~~i 281 (509)
T PRK14958 267 CVTRLVEQGVDFSNA 281 (509)
T ss_pred HHHHHHHcCCCHHHH
Confidence 999999988887643
No 389
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.92 E-value=3.8e+02 Score=26.53 Aligned_cols=34 Identities=9% Similarity=0.065 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 036107 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369 (441)
Q Consensus 336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 369 (441)
...++.+....+....|+.++.+|.+.|..|...
T Consensus 251 ~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 251 LTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 4445555444444567888888888888777655
No 390
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=38.63 E-value=4e+02 Score=26.25 Aligned_cols=87 Identities=10% Similarity=0.071 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHcCC-CCCHHHHHHHHH----HHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccH
Q 036107 350 GNALKLRQKIEEDSC-KPDCETHARSLK----MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNA 424 (441)
Q Consensus 350 ~~a~~~~~~m~~~g~-~p~~~t~~~li~----~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 424 (441)
...+.++....+-+. .++......++. .|.+....+.-+..+++++.....|..|+......+.-.|.-.+..+-
T Consensus 152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l 231 (464)
T PF11864_consen 152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSL 231 (464)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccccc
Confidence 344444444443332 345444444444 333333333334445566666667777766655555544444454444
Q ss_pred HHHHHHHHHHHh
Q 036107 425 KERIDELLTHAT 436 (441)
Q Consensus 425 a~~~~~~m~~~~ 436 (441)
....|+.|...-
T Consensus 232 ~~~~w~~m~nL~ 243 (464)
T PF11864_consen 232 CKPSWRTMRNLL 243 (464)
T ss_pred chhHHHHHHHHH
Confidence 555555555444
No 391
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=38.50 E-value=64 Score=17.08 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=6.5
Q ss_pred CHHHHHHHHHHHhh
Q 036107 227 KSDYAQKAMKEMFQ 240 (441)
Q Consensus 227 ~~~~a~~~~~~m~~ 240 (441)
+++.|..+|+++..
T Consensus 2 ~~~~~r~i~e~~l~ 15 (33)
T smart00386 2 DIERARKIYERALE 15 (33)
T ss_pred cHHHHHHHHHHHHH
Confidence 34444445554443
No 392
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=38.46 E-value=1.7e+02 Score=21.86 Aligned_cols=79 Identities=8% Similarity=0.022 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036107 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYE 306 (441)
Q Consensus 227 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 306 (441)
..++|..+-+-+...|-. ...+--+-++.+.+.|++++|..+.+.+ ..||...|-+|-. .+.|.-++...-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 356677666666654321 2222223345677899999999988776 4789999888764 57788888888788
Q ss_pred HHhhCC
Q 036107 307 KMKSDD 312 (441)
Q Consensus 307 ~m~~~g 312 (441)
+|..+|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 888877
No 393
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=37.93 E-value=89 Score=23.56 Aligned_cols=48 Identities=8% Similarity=0.089 Sum_probs=37.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 036107 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386 (441)
Q Consensus 339 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 386 (441)
++..+...+..-.|.++++.+.+.+..++..|.-..|+.+...|-+.+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 445555556667889999999988888888888888999998888665
No 394
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=37.80 E-value=5.2e+02 Score=27.41 Aligned_cols=100 Identities=16% Similarity=0.081 Sum_probs=0.0
Q ss_pred hcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036107 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF 201 (441)
Q Consensus 122 ~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 201 (441)
...|+.-+......+.... .|+...|+.++++....+....+...+..++...|......++..+.. |+.+.++.++
T Consensus 192 ~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~-~d~~~~l~~~ 268 (830)
T PRK07003 192 GEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAA-GDGPEILAVA 268 (830)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHc-CCHHHHHHHH
Q ss_pred HHhhhCCCCcHHHHHHHHHHHHh
Q 036107 202 LKFKDCISLSSQIFDVLIHGWCK 224 (441)
Q Consensus 202 ~~~~~~~~~~~~~~~~li~~~~~ 224 (441)
+++...-..-.....-|+..+.+
T Consensus 269 ~~l~~~g~~~~~~l~dLl~~l~~ 291 (830)
T PRK07003 269 DEMALRSLSFSTALQDLASLLHR 291 (830)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHH
No 395
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=37.76 E-value=2.4e+02 Score=23.45 Aligned_cols=77 Identities=12% Similarity=0.140 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CccHHHHHHHH
Q 036107 353 LKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS-LGNAKERIDEL 431 (441)
Q Consensus 353 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~ 431 (441)
..+.+++.+.|+ +..+....+..++.....+.|.++ +...+...+..|+..-...+.+.+.+.| .++.+..++..
T Consensus 88 ~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~--~~kk~~~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~ 163 (174)
T COG2137 88 ARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKV--LRKKFKRENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNE 163 (174)
T ss_pred HHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHH--HHHHhCccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345555556663 333334444444444444444332 1222222234455555555556665555 44444445544
Q ss_pred HH
Q 036107 432 LT 433 (441)
Q Consensus 432 m~ 433 (441)
+.
T Consensus 164 ~~ 165 (174)
T COG2137 164 AE 165 (174)
T ss_pred hh
Confidence 43
No 396
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=37.70 E-value=1.3e+02 Score=27.85 Aligned_cols=51 Identities=10% Similarity=0.038 Sum_probs=28.3
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036107 186 DTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMK 236 (441)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 236 (441)
+-|.+.|.+++|+..|..--.-.+-|.+++..-..+|.+...+..|+.=..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 445566666666666655432222355666666666666666655544333
No 397
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=36.83 E-value=3.4e+02 Score=25.01 Aligned_cols=171 Identities=9% Similarity=0.046 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 036107 128 HTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC 207 (441)
Q Consensus 128 p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 207 (441)
++...|..+... +.++++++....++....- .. -+.......|......+.+...+.+..++.+.....
T Consensus 29 ~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~--~~-------~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~ 97 (352)
T PF02259_consen 29 PEYSFYRALLAL--RQGDYDEAKKYIEKARQLL--LD-------ELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNL 97 (352)
T ss_pred hhHHHHHHHHHH--hCccHHHHHHHHHHHHHHH--HH-------HHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 345556665544 7788888888888777632 00 011123344555445555544444444444333110
Q ss_pred CCCcHHHHHHHHHHHHh-----cCCHH---HHHHHHHHHhh--CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036107 208 ISLSSQIFDVLIHGWCK-----TRKSD---YAQKAMKEMFQ--HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277 (441)
Q Consensus 208 ~~~~~~~~~~li~~~~~-----~~~~~---~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 277 (441)
. .+......++..+.. ..+++ ..+.+=..+.. ........+|..+...+.+.|.++.|...+..+.+.+
T Consensus 98 ~-~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~ 176 (352)
T PF02259_consen 98 S-QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLN 176 (352)
T ss_pred c-ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccC
Confidence 0 001112222222111 11111 11111111111 1123455788999999999999999999999988754
Q ss_pred CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 278 CKP---SVITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 278 ~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
... +......-....-..|+..+|...++...+
T Consensus 177 ~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 177 PSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred CcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 211 233344445556777899999998888777
No 398
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.78 E-value=2.2e+02 Score=25.09 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 252 CFIEHYCREKDFRKVDYTLKEMQE----KG-CKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309 (441)
Q Consensus 252 ~li~~~~~~g~~~~a~~l~~~m~~----~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 309 (441)
.|-.-|.+.|++++|.++|+.+.. +| ..+...+...+..++.+.|+.+....+--+|.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 455667788888888888888732 23 23445666777788888888887776655543
No 399
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=36.57 E-value=5.2e+02 Score=27.02 Aligned_cols=100 Identities=11% Similarity=0.093 Sum_probs=0.0
Q ss_pred hcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036107 122 TQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF 201 (441)
Q Consensus 122 ~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 201 (441)
...|+.-+......++... .|+...|+.++++....+.+..+...+..++...+......|+.++.+ ++...++.++
T Consensus 192 ~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l 268 (709)
T PRK08691 192 DSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKA 268 (709)
T ss_pred HHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHH
Q ss_pred HHhhhCCCCcHHHHHHHHHHHHh
Q 036107 202 LKFKDCISLSSQIFDVLIHGWCK 224 (441)
Q Consensus 202 ~~~~~~~~~~~~~~~~li~~~~~ 224 (441)
+.+...-.--.....-|+..+..
T Consensus 269 ~~L~~~G~d~~~~l~~L~~~l~~ 291 (709)
T PRK08691 269 QEMAACAVGFDNALGELAILLQQ 291 (709)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHH
No 400
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=36.33 E-value=62 Score=16.31 Aligned_cols=27 Identities=30% Similarity=0.174 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 284 TCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
+|..+-..+...++++.|...|....+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455666677777888888887776654
No 401
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=36.13 E-value=3.6e+02 Score=25.08 Aligned_cols=95 Identities=17% Similarity=0.172 Sum_probs=54.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCC
Q 036107 269 TLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE 348 (441)
Q Consensus 269 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~ 348 (441)
+-++..+.|++.+......++..+. |+...+..-++.+.-..... ..+...+-...++......| =+.-+...|+
T Consensus 149 i~~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~-~I~~~~V~~~v~~~~~~~~f--~l~dail~g~ 223 (334)
T COG1466 149 IKKRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDK-EITLEDVEEVVSDVAEFNIF--DLADALLKGD 223 (334)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCC-cCCHHHHHHHHhccccCCHH--HHHHHHHCCC
Confidence 3344566677777777777776655 66666665555554322111 22223333333333332222 2334556889
Q ss_pred hhHHHHHHHHHHHcCCCCCH
Q 036107 349 EGNALKLRQKIEEDSCKPDC 368 (441)
Q Consensus 349 ~~~a~~~~~~m~~~g~~p~~ 368 (441)
...|..+++++...|..|-.
T Consensus 224 ~~~a~~~l~~L~~~ge~p~~ 243 (334)
T COG1466 224 VKKALRLLRDLLLEGEEPLK 243 (334)
T ss_pred HHHHHHHHHHHHHcCCcHHH
Confidence 99999999999998876644
No 402
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=35.59 E-value=82 Score=24.02 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=34.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 036107 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386 (441)
Q Consensus 338 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 386 (441)
.++......+..-.|.++++.|.+.+...+..|.-.-|..+.+.|-+..
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 4555566666667788888888888878888777777787777776544
No 403
>PRK09857 putative transposase; Provisional
Probab=35.41 E-value=2.8e+02 Score=25.25 Aligned_cols=65 Identities=9% Similarity=0.073 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 251 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 316 (441)
..++....+.++.++..++++.+.+. .+......-++..-+.+.|.-+++.++...|...|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444445555555555555443 222222222334444444555566777777777776654
No 404
>PRK09462 fur ferric uptake regulator; Provisional
Probab=35.24 E-value=2.2e+02 Score=22.66 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=22.4
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCHHH
Q 036107 273 MQEKGCKPSVITCTIVMHALEKA-KQIYEALKVYEKMKSDDCLTDTSF 319 (441)
Q Consensus 273 m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~~ 319 (441)
+++.|++++..- ..++..+... +..-.|.++++.+.+.+...+..|
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aT 54 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLAT 54 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHH
Confidence 445555544332 2333333332 345566666666666554444444
No 405
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=35.18 E-value=2.4e+02 Score=25.87 Aligned_cols=58 Identities=5% Similarity=0.017 Sum_probs=38.0
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036107 232 QKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294 (441)
Q Consensus 232 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 294 (441)
.++++.|.+.++.|.-..+-.+.--+.+.=.+..++.+++.+... ..-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 356777777777777777776666666766777777777777653 2335555555553
No 406
>PRK09687 putative lyase; Provisional
Probab=34.94 E-value=3.5e+02 Score=24.50 Aligned_cols=232 Identities=10% Similarity=0.012 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCH----HHHHHHHHHh
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSV----AHAYKVFLKF 204 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~~ 204 (441)
|.......+.++...|. +.+...+..+.... |...=...+.+++..|+. +++...+..+
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~~----------------d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCSSK----------------NPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHhCC----------------CHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 45555555556655554 23333333333322 455555556666666653 3455555444
Q ss_pred -hhCCCCcHHHHHHHHHHHHhcCCH-----HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 036107 205 -KDCISLSSQIFDVLIHGWCKTRKS-----DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278 (441)
Q Consensus 205 -~~~~~~~~~~~~~li~~~~~~~~~-----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 278 (441)
.+ .++..+-...+.+++..+.- ..+...+...... ++..+=-..+.++.+.++. ++...+-.+.+.
T Consensus 99 ~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d-- 170 (280)
T PRK09687 99 ALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVINDE-AAIPLLINLLKD-- 170 (280)
T ss_pred Hhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC--
Confidence 22 24555555555555554321 2233333333322 3555555666666666653 444555444442
Q ss_pred CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHH
Q 036107 279 KPSVITCTIVMHALEKAK-QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357 (441)
Q Consensus 279 ~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~ 357 (441)
+|...-...+.++.+.+ +...+...+..+... ++..+ -...+.++.+.|+ ..|+..+-
T Consensus 171 -~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~V----------------R~~A~~aLg~~~~-~~av~~Li 229 (280)
T PRK09687 171 -PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEI----------------RIEAIIGLALRKD-KRVLSVLI 229 (280)
T ss_pred -CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHH----------------HHHHHHHHHccCC-hhHHHHHH
Confidence 34455555555565543 133454444444432 24433 3344444445444 34555544
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036107 358 KIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELE 417 (441)
Q Consensus 358 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~ 417 (441)
...+.+ + .....+.++...|.. ++ ...+.++.+ -.||..+-...+.+|.
T Consensus 230 ~~L~~~---~--~~~~a~~ALg~ig~~-~a---~p~L~~l~~--~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 230 KELKKG---T--VGDLIIEAAGELGDK-TL---LPVLDTLLY--KFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHcCC---c--hHHHHHHHHHhcCCH-hH---HHHHHHHHh--hCCChhHHHHHHHHHh
Confidence 444332 1 123566677777664 33 334555443 2346666665555554
No 407
>PRK09462 fur ferric uptake regulator; Provisional
Probab=33.83 E-value=2.1e+02 Score=22.83 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=38.8
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 036107 237 EMFQHGFSPDGVSYTCFIEHYCRE-KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQI 298 (441)
Q Consensus 237 ~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 298 (441)
.+.+.|++++..- ..++...... +..-.|.++++.+.+.+...+..|.--.|..+...|-+
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455676655432 3444444443 45667888888888877777777766667777766654
No 408
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=33.44 E-value=4.6e+02 Score=25.52 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036107 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEE 415 (441)
Q Consensus 336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~ 415 (441)
...|+.-|...|++.+|....+++-- .+--....+.+++.+..+.|+-... ++++++.-..|+ .|-+-|-++
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~---ldLLk~cf~sgl----IT~nQMtkG 583 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMVMEKKGDSTMI---LDLLKECFKSGL----ITTNQMTKG 583 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHHHHhcCcHHHH---HHHHHHHHhcCc----eeHHHhhhh
Confidence 34577888888888888887776521 1112345677888888877775543 445555443333 444455555
Q ss_pred HHh
Q 036107 416 LEK 418 (441)
Q Consensus 416 ~~~ 418 (441)
|.|
T Consensus 584 f~R 586 (645)
T KOG0403|consen 584 FER 586 (645)
T ss_pred hhh
Confidence 544
No 409
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=33.25 E-value=97 Score=20.84 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=38.1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 260 (441)
.|....++.++..+++..-++++...+.+..+.|. .+..+|---++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 46667888899999998889999999999988875 4666666666666553
No 410
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=32.67 E-value=2.1e+02 Score=21.31 Aligned_cols=99 Identities=14% Similarity=0.075 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHH---HHHHH
Q 036107 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK--DFRKVDYTLKEMQEKGCKPSVIT---CTIVM 289 (441)
Q Consensus 215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~l~~~m~~~g~~p~~~~---~~~ll 289 (441)
...+|..|...|+.++|..-+.++.... --......+|..+...+ .-+.+-.++..+.+.+..+.... |..++
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l 82 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLL 82 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3456777888899999999998875421 12233444555454442 24556778888887776544332 22333
Q ss_pred HHHHhc-----CCHHHHHHHHHHHhhCCCCC
Q 036107 290 HALEKA-----KQIYEALKVYEKMKSDDCLT 315 (441)
Q Consensus 290 ~~~~~~-----~~~~~a~~~~~~m~~~g~~~ 315 (441)
..+-.. ..++-.-+++..+...|+-|
T Consensus 83 ~~l~Dl~~D~P~~~~~la~~~~~~i~~~~lp 113 (113)
T PF02847_consen 83 ESLEDLELDIPKAPEYLAKFLARLIADGILP 113 (113)
T ss_dssp HHHHHHHHHSTTHHHHHHHHHHHHHHTTSS-
T ss_pred hHhhhccccchHHHHHHHHHHHHHHHcCCcC
Confidence 322111 12334445555566666543
No 411
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=32.38 E-value=2.2e+02 Score=28.82 Aligned_cols=128 Identities=5% Similarity=0.007 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 256 (441)
+...-.-++..|.+.|..+.|.++...+.... ....-|..-+..+.++|+...+-.+-+.+.+.....+......+++.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~-~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~ 482 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRL-LKEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDN 482 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---------------------------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 55566778888889999999998888773211 12234667777778888877666665555533222222222222222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 036107 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 318 (441)
..... +....+.| ..+|.-.-+ ..+.|++.+|.+.+-.+.+.++.|...
T Consensus 483 i~~~~-----------~~~~~L~f-la~yreF~~-~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 483 IGSPM-----------LLSQRLSF-LAKYREFYE-LYDEGDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp --------------------------------------------------------------
T ss_pred hcchh-----------hhhhhhHH-HHHHHHHHH-HHhhhhHHHHHHHHHHHHCCCCCcHHH
Confidence 21111 00000100 011111111 123377777777777777777777554
No 412
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=32.32 E-value=1.1e+02 Score=23.06 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036107 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296 (441)
Q Consensus 261 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 296 (441)
+..-.|.++++.+.+.+..++..|....|+.+.+.|
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333344444444444444444444444444444443
No 413
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=32.24 E-value=1.9e+02 Score=20.81 Aligned_cols=54 Identities=15% Similarity=0.067 Sum_probs=28.9
Q ss_pred HHhcCCHHHHHHHHHHHH----HcCCCCC--H--HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 257 YCREKDFRKVDYTLKEMQ----EKGCKPS--V--ITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~----~~g~~p~--~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
..+.|++.+|.+-+.+.. ..+.... . ...-.+.......|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345677777655444442 2222221 1 1222233445667888888888877654
No 414
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.04 E-value=3.2e+02 Score=23.25 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=64.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHH-----HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI-----EHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293 (441)
Q Consensus 219 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li-----~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 293 (441)
-..+..++++++|..-++.-... |....+..++ ......|.+|+|+.+++...+.+.. ......--+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHH
Confidence 35678889999999998877653 4444444443 4566789999999999988776442 222333446788
Q ss_pred hcCCHHHHHHHHHHHhhCC
Q 036107 294 KAKQIYEALKVYEKMKSDD 312 (441)
Q Consensus 294 ~~~~~~~a~~~~~~m~~~g 312 (441)
..|+-++|+.-|....+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 8999999999999988876
No 415
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=30.96 E-value=3.1e+02 Score=22.77 Aligned_cols=65 Identities=8% Similarity=0.160 Sum_probs=31.2
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 231 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
..++-..+...|+.++. ...++..+.+.|..-|..--.+.+..-.+.| ..-..+..++.+
T Consensus 37 e~ELr~kL~k~~~~~~~------------------Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~q 96 (174)
T COG2137 37 EKELRRKLAKKEFSEEI------------------IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQ 96 (174)
T ss_pred HHHHHHHHHhccCCHHH------------------HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHH
Confidence 34555666666655544 3344444444444433333333344333433 334455566666
Q ss_pred CCCCC
Q 036107 311 DDCLT 315 (441)
Q Consensus 311 ~g~~~ 315 (441)
.|+.+
T Consensus 97 kGi~~ 101 (174)
T COG2137 97 KGIDD 101 (174)
T ss_pred cCCCH
Confidence 66544
No 416
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.23 E-value=8e+02 Score=27.30 Aligned_cols=150 Identities=9% Similarity=0.045 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 036107 250 YTCFIEHYCREKDFRKVDYTLKEMQEK-G--CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326 (441)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~l~~~m~~~-g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (441)
|-.++.-+-+.+..+.+.++-....+. + -+.-..+++++.+.....|.+-+|.+..-.-.+. .........++..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHH
Confidence 667777777888888888776665543 1 1112456778888888888887776555432221 1122244556666
Q ss_pred HHhcCccchHHHHHHHHHhcCChhHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH-HHHHHHHHHHCCCCC
Q 036107 327 LSKAVRFLIYNTMISSACVRSEEGNALK-LRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML-VLNLMREMLSKGIVP 404 (441)
Q Consensus 327 ~~~~g~~~~~~~li~~~~~~g~~~~a~~-~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~-~~~~~~~m~~~~~~p 404 (441)
++.+|. +..+.. +---|--++... +++.--.....-...-|+.|-.-+...+++.+|-- .++.-.++...+-.+
T Consensus 1064 Lfecg~---l~~L~~-fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se~~~~ 1139 (1480)
T KOG4521|consen 1064 LFECGE---LEALAT-FPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESETCMT 1139 (1480)
T ss_pred HHhccc---hHHHhh-CCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcccccCC
Confidence 677766 333333 333344455555 33332222211112234545455566777776543 344434443344444
Q ss_pred C
Q 036107 405 Q 405 (441)
Q Consensus 405 ~ 405 (441)
+
T Consensus 1140 ~ 1140 (1480)
T KOG4521|consen 1140 P 1140 (1480)
T ss_pred H
Confidence 4
No 417
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=30.10 E-value=1.6e+02 Score=20.94 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 036107 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDE 158 (441)
Q Consensus 125 g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~ 158 (441)
.+.|+...||.+++.....+...-|..++.+...
T Consensus 11 ~F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V~ 44 (83)
T PF10963_consen 11 TFNPTPTAYNKYINEMAMDNKVAPAHNYLMRIVD 44 (83)
T ss_pred EeccCHHHHHHHHHHhccCCCchHHHHHHHHHcC
Confidence 4568999999999999988888888777766554
No 418
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.94 E-value=8.1e+02 Score=27.27 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=88.8
Q ss_pred hcCCChHHHHHHHhhhhhHhhh--------------------hcCCCCCC-----HHHHHHHHHHHHcCCChhHHHHHHH
Q 036107 100 KRYPSPDKVVEALKCFCFTWAK--------------------TQTGYMHT-----PETYNAMVEALGKSKKFGLMWELVK 154 (441)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~~~~~--------------------~~~g~~p~-----~~~y~~li~~~~~~~~~~~a~~l~~ 154 (441)
-+|...|...+|++.|...... ...|-.|+ ..-|-.++..+-+.+-.+.+.++-.
T Consensus 928 ~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~ 1007 (1480)
T KOG4521|consen 928 IAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAV 1007 (1480)
T ss_pred eeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4688888888888888711110 01232332 2347788888888888888887766
Q ss_pred HHHH-hcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHH---
Q 036107 155 EIDE-LSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDY--- 230 (441)
Q Consensus 155 ~m~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~--- 230 (441)
...+ .++..|+ -..+++++.+.....|.+.+|....-.-.. ...-.....-++..++.+|.++.
T Consensus 1008 ~AIe~l~dd~ps-----------~a~~~t~vFnhhldlgh~~qAy~ai~~npd-serrrdcLRqlvivLfecg~l~~L~~ 1075 (1480)
T KOG4521|consen 1008 KAIENLPDDNPS-----------VALISTTVFNHHLDLGHWFQAYKAILRNPD-SERRRDCLRQLVIVLFECGELEALAT 1075 (1480)
T ss_pred HHHHhCCCcchh-----------HHHHHHHHHHhhhchhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHhccchHHHhh
Confidence 5444 2333332 235666777777778888777665543321 11222345566667777776543
Q ss_pred ---------HHH-HHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 036107 231 ---------AQK-AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYT 269 (441)
Q Consensus 231 ---------a~~-~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l 269 (441)
... +++.--+........-|+.|-.-+...+++.+|-.+
T Consensus 1076 fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1076 FPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred CCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 333 232222222222233466666666777777776443
No 419
>PRK13342 recombination factor protein RarA; Reviewed
Probab=29.69 E-value=5.2e+02 Score=24.92 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 036107 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFI 254 (441)
Q Consensus 226 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li 254 (441)
++.+.|+.++..|.+.|..|....-..++
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~ 272 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVI 272 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 56666666666666666555543333333
No 420
>PRK09857 putative transposase; Provisional
Probab=29.63 E-value=4.1e+02 Score=24.26 Aligned_cols=18 Identities=28% Similarity=0.128 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 036107 264 RKVDYTLKEMQEKGCKPS 281 (441)
Q Consensus 264 ~~a~~l~~~m~~~g~~p~ 281 (441)
+++.++.+.|...|+.++
T Consensus 257 e~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 257 SKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHHHcCCCHH
Confidence 445555555555555433
No 421
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=29.59 E-value=1.8e+02 Score=20.05 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhc
Q 036107 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKT 225 (441)
Q Consensus 192 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 225 (441)
=+.+.|..++..+++.-+.+...||++...+.+.
T Consensus 11 lDtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 11 LDTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 3567788888888776677788899887766554
No 422
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.51 E-value=6.4e+02 Score=25.96 Aligned_cols=74 Identities=5% Similarity=0.031 Sum_probs=41.8
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036107 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC-------------KPSVITCTIVMHALEKAKQIYEALKVYE 306 (441)
Q Consensus 240 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 306 (441)
+.|+..+......++. ...|+...++.++++....|- .++......++.++.. |+...+.++++
T Consensus 198 ~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~-~d~~~al~~l~ 274 (618)
T PRK14951 198 AENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ-GDGRTVVETAD 274 (618)
T ss_pred HcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 3455555555544444 223566666666554432221 1233344455555544 78888888888
Q ss_pred HHhhCCCCCC
Q 036107 307 KMKSDDCLTD 316 (441)
Q Consensus 307 ~m~~~g~~~~ 316 (441)
++.+.|..+.
T Consensus 275 ~l~~~G~~~~ 284 (618)
T PRK14951 275 ELRLNGLSAA 284 (618)
T ss_pred HHHHcCCCHH
Confidence 8888887664
No 423
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=29.45 E-value=4e+02 Score=23.54 Aligned_cols=57 Identities=12% Similarity=0.224 Sum_probs=31.2
Q ss_pred hcCCHHHHHHHHHHHhhC-CC-----------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 036107 224 KTRKSDYAQKAMKEMFQH-GF-----------SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281 (441)
Q Consensus 224 ~~~~~~~a~~~~~~m~~~-g~-----------~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 281 (441)
..|++..|+.-++.-... |+ .|.+.....++..|.+ +++++|.+++.++.+.|..|.
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHH
Confidence 355666665555444321 11 3555555566655544 456666666666666666554
No 424
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.43 E-value=4e+02 Score=23.50 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhh-----hC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107 183 VLMDTLVKRNSVAHAYKVFLKFK-----DC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238 (441)
Q Consensus 183 ~li~~~~~~g~~~~a~~~~~~~~-----~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 238 (441)
-+-.-|.+.|++++|.++|+.+- ++ ..+...+...+..++.+.|+.+....+--+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44455666777777777776651 12 2334444555566666666666666555444
No 425
>PHA02798 ankyrin-like protein; Provisional
Probab=29.27 E-value=3.2e+02 Score=27.03 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=9.2
Q ss_pred HHHHHHHHHHcCCCCC
Q 036107 266 VDYTLKEMQEKGCKPS 281 (441)
Q Consensus 266 a~~l~~~m~~~g~~p~ 281 (441)
..++.+.+.+.|..+|
T Consensus 88 ~~~iv~~Ll~~GadiN 103 (489)
T PHA02798 88 MLDIVKILIENGADIN 103 (489)
T ss_pred HHHHHHHHHHCCCCCC
Confidence 3556666666665554
No 426
>PRK12356 glutaminase; Reviewed
Probab=28.95 E-value=2.9e+02 Score=25.52 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=11.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 036107 277 GCKPSVITCTIVMHALEKAKQ 297 (441)
Q Consensus 277 g~~p~~~~~~~ll~~~~~~~~ 297 (441)
|..|+-..||++++--...|.
T Consensus 93 G~EPSG~~FNsi~~Le~~~g~ 113 (319)
T PRK12356 93 GADPTGLPFNSVIAIELHGGK 113 (319)
T ss_pred CCCCCCCCcchHHHhhccCCC
Confidence 556666666666544333343
No 427
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=28.95 E-value=3.9e+02 Score=23.28 Aligned_cols=100 Identities=13% Similarity=0.089 Sum_probs=57.1
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---CHhhHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 036107 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP---DGVSYT--CFIEHYCREKDFRKVDYTLKEMQEKGCKPS 281 (441)
Q Consensus 207 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~--~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 281 (441)
.+.+...-+|.||--|.-...+.+|-..|.. ..|+.| |..+++ .-|....+.|+.++|.+...++...-+..|
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 3455555677776666555555555555543 344544 333333 455667788888888888887755444444
Q ss_pred HHHHHHHHH----HHHhcCCHHHHHHHHHHH
Q 036107 282 VITCTIVMH----ALEKAKQIYEALKVYEKM 308 (441)
Q Consensus 282 ~~~~~~ll~----~~~~~~~~~~a~~~~~~m 308 (441)
...+-.|.. =..+.|..++|.++.+.=
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 323222221 145667777777766643
No 428
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=28.91 E-value=2.1e+02 Score=26.67 Aligned_cols=33 Identities=9% Similarity=0.237 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhcCCCcc
Q 036107 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVS 165 (441)
Q Consensus 133 y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~ 165 (441)
--.+++.|.++|.+++|+++....++.....|.
T Consensus 109 lP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~ 141 (338)
T PF04124_consen 109 LPQLMDTCIRNGNYSEALELSAHVRRLQSRFPN 141 (338)
T ss_pred hHHHHHHHHhcccHhhHHHHHHHHHHHHHhccC
Confidence 447789999999999999999998887645543
No 429
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.16 E-value=3.8e+02 Score=22.85 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHH-----HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036107 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC-----FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286 (441)
Q Consensus 212 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-----li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~ 286 (441)
+..|..++.... .+.. +.....+++... +...+|.. +-..+...+++++|..-++..... |....+.
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~---n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk 125 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQA---NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLK 125 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhh---ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHH
Confidence 445666666553 2233 555555666553 22333332 234577888999999888876654 2233333
Q ss_pred H-----HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036107 287 I-----VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361 (441)
Q Consensus 287 ~-----ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 361 (441)
. |-......|.+|+|..+++...+.+..+-. ...--+.+...|+-++|..-|++-.+
T Consensus 126 ~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~------------------~elrGDill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 126 ALAALRLARVQLQQKKADAALKTLDTIKEESWAAIV------------------AELRGDILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHH------------------HHHhhhHHHHcCchHHHHHHHHHHHH
Confidence 3 344567788899999888887776533210 11223467778888888888888776
Q ss_pred cC
Q 036107 362 DS 363 (441)
Q Consensus 362 ~g 363 (441)
.+
T Consensus 188 ~~ 189 (207)
T COG2976 188 SD 189 (207)
T ss_pred cc
Confidence 65
No 430
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=28.10 E-value=99 Score=23.56 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHH
Q 036107 263 FRKVDYTLKEMQEKGCKPSVI 283 (441)
Q Consensus 263 ~~~a~~l~~~m~~~g~~p~~~ 283 (441)
.-.|.++++.|.+.|...+..
T Consensus 23 ~~ta~ei~~~l~~~~~~is~~ 43 (120)
T PF01475_consen 23 HLTAEEIYDKLRKKGPRISLA 43 (120)
T ss_dssp SEEHHHHHHHHHHTTTT--HH
T ss_pred CCCHHHHHHHhhhccCCcCHH
Confidence 333444444444433333333
No 431
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=27.66 E-value=5.3e+02 Score=24.41 Aligned_cols=144 Identities=13% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHH--HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHH
Q 036107 93 KVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPE--TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMS 170 (441)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~--~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~ 170 (441)
.+.-.+..++..-+.+..+++-|+-........-.|... .|-.+-+.|++..|+++|.-+..+..+.- ......-+.
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv-~s~~l~d~~ 201 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV-NSYGLKDWS 201 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH-HhcCcCchh
Q ss_pred HHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh---hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036107 171 TVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF---KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKE 237 (441)
Q Consensus 171 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 237 (441)
...+.........-+....+.|+..++-+--.++ ..+-..-....-.+-+.|-..|+.|.|+.-|++
T Consensus 202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
No 432
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=27.58 E-value=1.9e+02 Score=19.18 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=27.8
Q ss_pred HHhcCCHHHHHHHHHHh-hhCCCCcHHHHHHHHHHH-----HhcCCHHHHHHHH
Q 036107 188 LVKRNSVAHAYKVFLKF-KDCISLSSQIFDVLIHGW-----CKTRKSDYAQKAM 235 (441)
Q Consensus 188 ~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~-----~~~~~~~~a~~~~ 235 (441)
+-+.|++=+|.++++.+ ...-.+....+..||... .+.|+.+.|.+++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 34567777777777777 222223555666666543 3567777766654
No 433
>PHA03100 ankyrin repeat protein; Provisional
Probab=27.48 E-value=2.9e+02 Score=27.04 Aligned_cols=143 Identities=10% Similarity=0.053 Sum_probs=68.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhh--HHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCCH---HHHH
Q 036107 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS--YTCFIEH-----YCREKDFRKVDYTLKEMQEKGCKPSV---ITCT 286 (441)
Q Consensus 217 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~-----~~~~g~~~~a~~l~~~m~~~g~~p~~---~~~~ 286 (441)
+.+...++.|+.+-+..++ +.|..|+... ..+.+.. ++..|..+- .+.+.+.|..++. ...+
T Consensus 37 t~L~~A~~~~~~~ivk~Ll----~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~i----v~~Ll~~ga~i~~~d~~g~t 108 (480)
T PHA03100 37 LPLYLAKEARNIDVVKILL----DNGADINSSTKNNSTPLHYLSNIKYNLTDVKEI----VKLLLEYGANVNAPDNNGIT 108 (480)
T ss_pred hhhhhhhccCCHHHHHHHH----HcCCCCCCccccCcCHHHHHHHHHHHhhchHHH----HHHHHHCCCCCCCCCCCCCc
Confidence 4455566777765554444 4566665432 2234444 455555444 4444455654432 2234
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 036107 287 IVMHALE-KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365 (441)
Q Consensus 287 ~ll~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 365 (441)
.|..|.. ..|+.+-+ +.+.+.|..++... ....+.+...+..|. .-.++.+.+.+.|..
T Consensus 109 pL~~A~~~~~~~~~iv----~~Ll~~g~~~~~~~--------------~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~d 168 (480)
T PHA03100 109 PLLYAISKKSNSYSIV----EYLLDNGANVNIKN--------------SDGENLLHLYLESNK--IDLKILKLLIDKGVD 168 (480)
T ss_pred hhhHHHhcccChHHHH----HHHHHcCCCCCccC--------------CCCCcHHHHHHHcCC--ChHHHHHHHHHCCCC
Confidence 4444432 55665544 44445665554321 112234444555552 123445555666766
Q ss_pred CCHHHH--HHHHHHHHhcCChhhH
Q 036107 366 PDCETH--ARSLKMCCHKKRMKDG 387 (441)
Q Consensus 366 p~~~t~--~~li~~~~~~g~~~~a 387 (441)
++...- .+.+...+..|+.+-+
T Consensus 169 in~~d~~g~tpL~~A~~~~~~~iv 192 (480)
T PHA03100 169 INAKNRYGYTPLHIAVEKGNIDVI 192 (480)
T ss_pred cccccCCCCCHHHHHHHhCCHHHH
Confidence 654321 2334455566655443
No 434
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.10 E-value=2.2e+02 Score=21.60 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhc
Q 036107 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELS 160 (441)
Q Consensus 124 ~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~ 160 (441)
.|+.|++ |.-+.++...++|+++.+.|.+.|
T Consensus 61 sGy~PtV------iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 61 SGYNPTV------IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred cCCCChH------HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4666665 555788899999999999999988
No 435
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.76 E-value=3e+02 Score=21.28 Aligned_cols=44 Identities=16% Similarity=0.023 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036107 148 LMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK 203 (441)
Q Consensus 148 ~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 203 (441)
.+.++|..|...+.+.. -..-|...-..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~------------~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTK------------LALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTT------------BHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHH------------HHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999773332 456777778888899999999999864
No 436
>COG2066 GlsA Glutaminase [Amino acid transport and metabolism]
Probab=26.72 E-value=1.3e+02 Score=27.34 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=24.0
Q ss_pred CChhhHHHHhhHhHHhhhccCCCcchh
Q 036107 2 PPKHDIWKLLSQSHLQKHHKINPLGCL 28 (441)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~n~~i~~ 28 (441)
-|.++.|+=+.|-...+..|.|++|.+
T Consensus 92 ePSG~pFNSi~qLE~~~g~P~NPmINA 118 (309)
T COG2066 92 EPSGLPFNSVIQLELEGGKPRNPMINA 118 (309)
T ss_pred CCCCCcchHHHHHHHhCCCCCCccccc
Confidence 378899999999999999999999987
No 437
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.64 E-value=4.9e+02 Score=23.69 Aligned_cols=140 Identities=15% Similarity=0.140 Sum_probs=77.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhH-------HHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHH
Q 036107 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY-------TCFIEHYCREKDFRKVDYTLKEMQEK----GCKPSVITCT 286 (441)
Q Consensus 218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-------~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~~~~~~ 286 (441)
+.+-..+.+++++|...+.+....|+..|..+. .-+..-|...|++...-++....++. ..+-......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 445667888999999999999999988776543 45566677777766655554443221 1111222333
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc----chHHHHHHHHHhcCChhHHHHHHH----
Q 036107 287 IVMHALEKA-KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----LIYNTMISSACVRSEEGNALKLRQ---- 357 (441)
Q Consensus 287 ~ll~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~~~~li~~~~~~g~~~~a~~~~~---- 357 (441)
+|+.-+-.. ..++....+.... |.---+..+. ..=.-+|..+.+.|++.+|+.+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~---------------iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTAL---------------IEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 333333222 1233333333322 2222222221 223457888899999999988754
Q ss_pred HHHHcCCCCCHHHHH
Q 036107 358 KIEEDSCKPDCETHA 372 (441)
Q Consensus 358 ~m~~~g~~p~~~t~~ 372 (441)
+++...-+|+..+..
T Consensus 154 ElKk~DDK~~Li~vh 168 (421)
T COG5159 154 ELKKYDDKINLITVH 168 (421)
T ss_pred HHHhhcCccceeehh
Confidence 445445566665543
No 438
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=26.61 E-value=3.2e+02 Score=21.50 Aligned_cols=46 Identities=11% Similarity=-0.060 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCcc---chHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 036107 320 YSSLIFILSKAVRF---LIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365 (441)
Q Consensus 320 ~~~li~~~~~~g~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 365 (441)
|...++++...|.. .++..++-=..-.|+++.|+++.+-..++|..
T Consensus 32 Y~p~v~g~L~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 32 YLPWVEGVLASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred HHHHHHHHHHcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 44445555444433 34556666777889999999999999988853
No 439
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=26.58 E-value=5.3e+02 Score=24.00 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCCHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC----HHH
Q 036107 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQ----HGFSPDGVSYTCFIEHYCRE-KDFRKVDYTLKEMQEKGCKPS----VIT 284 (441)
Q Consensus 214 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~g~~p~----~~~ 284 (441)
.+-..-.-||+-|+-+.|++.+....+ .|.+.|+..+..-+.-+.-. .-+.+-++-.+.+.+.|-..+ ..+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 344455667777777777776655543 46667776666555543322 223444444445555554322 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 285 CTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 285 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
|..+- |...+++.+|-.+|-+...
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 44433 3334566777666665543
No 440
>PHA02940 hypothetical protein; Provisional
Probab=26.53 E-value=4.5e+02 Score=23.16 Aligned_cols=117 Identities=9% Similarity=0.076 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc
Q 036107 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211 (441)
Q Consensus 132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 211 (441)
.|-..+..|+...-.....++.++..+..+...+.......-. -..+...+...|.+.++.++-..+-+.+.+.+.|.
T Consensus 98 mF~nai~lYAnL~ainal~~~i~~~ik~~~~~t~~~~i~Ftqk--A~dtv~~la~~yvq~vk~d~r~~~a~~l~keLs~~ 175 (315)
T PHA02940 98 MFDNAIELYANLAAINALLRLIRSFIKPEPTLTTPLFIDFTQK--AKDTVILLAGRYVQDVKKDDRRTIANKLSKELSWT 175 (315)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCcCchHHHHHHHH--hhhHHHHHHHHHHHHccccHHHHHHHHHHhhhhHH
Confidence 4555566666544444444444444332222222111111111 23455667777777777777666666664422221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 036107 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY 257 (441)
Q Consensus 212 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 257 (441)
+..--+..+++.+.+-+++|.+..-.....||+.|..+.
T Consensus 176 -------~d~~enepdle~d~keie~~lE~~~dl~rGtY~vL~~al 214 (315)
T PHA02940 176 -------IDYQENEPDLESDFKEIEEELEEKDDLSRGTYKVLKRAL 214 (315)
T ss_pred -------HHHHhcCcchhhhHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 122233455777777777777765555666777766543
No 441
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=25.98 E-value=3.8e+02 Score=25.06 Aligned_cols=78 Identities=8% Similarity=-0.060 Sum_probs=49.6
Q ss_pred HHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHH
Q 036107 138 EALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV 217 (441)
Q Consensus 138 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 217 (441)
+-|.+.|.+++|+..+..-.... | ++++++..-..+|.+..++..|+.=.+..-. .=..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~---P-----------~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-------Ld~~ 163 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY---P-----------HNPVYHINRALAYLKQKSFAQAEEDCEAAIA-------LDKL 163 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC---C-----------CCccchhhHHHHHHHHHHHHHHHHhHHHHHH-------hhHH
Confidence 35788999999999998765533 1 2777888888889998888877654443311 1123
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 036107 218 LIHGWCKTRKSDYAQKAMK 236 (441)
Q Consensus 218 li~~~~~~~~~~~a~~~~~ 236 (441)
.+.+|++.+.-..++....
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNM 182 (536)
T ss_pred HHHHHHHHHHHHHHHhhHH
Confidence 4556666554444443333
No 442
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=25.82 E-value=8.4e+02 Score=26.10 Aligned_cols=89 Identities=9% Similarity=0.106 Sum_probs=54.3
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCC-----cHH---HHHHHHH-HHHhcCCHHHHHHHHHHHhh----CCCCCCHhhHHHHH
Q 036107 188 LVKRNSVAHAYKVFLKFKDCISL-----SSQ---IFDVLIH-GWCKTRKSDYAQKAMKEMFQ----HGFSPDGVSYTCFI 254 (441)
Q Consensus 188 ~~~~g~~~~a~~~~~~~~~~~~~-----~~~---~~~~li~-~~~~~~~~~~a~~~~~~m~~----~g~~p~~~~~~~li 254 (441)
.....++.+|..+..++....++ ... .|+.|=. .....|+++.|.++-+.... .-..+.+..+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888776332221 111 3444432 22345777777776655543 22334566677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 036107 255 EHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 255 ~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
.+..-.|++++|..+.++..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH
Confidence 7777888888888888776554
No 443
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=25.63 E-value=3.4e+02 Score=22.73 Aligned_cols=79 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCH-HHHHHHHHHHHhcCC-----------HHHHHHHHHHHhhCC
Q 036107 250 YTCFIEHYCREKDFRKVDYTLKEMQEK-----GCKPSV-ITCTIVMHALEKAKQ-----------IYEALKVYEKMKSDD 312 (441)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~l~~~m~~~-----g~~p~~-~~~~~ll~~~~~~~~-----------~~~a~~~~~~m~~~g 312 (441)
|...+.-.++.....++.+++++-.+. .+.|+. .++..+-.+|...+. +++|.+.|+...+.
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~- 109 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE- 109 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc-
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 036107 313 CLTDTSFYSSLIFILSKA 330 (441)
Q Consensus 313 ~~~~~~~~~~li~~~~~~ 330 (441)
.|+..+|+.-+++..+.
T Consensus 110 -~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 110 -DPNNELYRKSLEMAAKA 126 (186)
T ss_dssp --TT-HHHHHHHHHHHTH
T ss_pred -CCCcHHHHHHHHHHHhh
No 444
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=25.34 E-value=2.6e+02 Score=21.28 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=16.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCcH
Q 036107 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSS 212 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 212 (441)
+|+.+.++...++|+++.+.|.+.-..+.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GEIt~ 95 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGEITP 95 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCH
Confidence 45556666666666666666644333333
No 445
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=25.33 E-value=5.4e+02 Score=23.67 Aligned_cols=91 Identities=13% Similarity=0.082 Sum_probs=50.2
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhc
Q 036107 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD----DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR 346 (441)
Q Consensus 271 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~ 346 (441)
+++.+.|+..+......++..+. ++...+.+-++.+.-. +-..+......++. .. ...+|. ++.+.. .
T Consensus 141 ~~~~~~g~~i~~~a~~~L~~~~g--~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~---~~-~~~if~-l~dai~-~ 212 (326)
T PRK07452 141 RTAQELGVKLTPEAAELLAEAVG--NDSRRLYNELEKLALYAENSTKPISAEEVKALVS---NT-TQNSLQ-LADALL-Q 212 (326)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhC--ccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhc---cC-cCcHHH-HHHHHH-C
Confidence 34455566666666666665543 3455444444444332 11222222222221 11 123465 555554 4
Q ss_pred CChhHHHHHHHHHHHcCCCCCHH
Q 036107 347 SEEGNALKLRQKIEEDSCKPDCE 369 (441)
Q Consensus 347 g~~~~a~~~~~~m~~~g~~p~~~ 369 (441)
|+...|.++++.+...|..|-..
T Consensus 213 ~~~~~A~~~l~~L~~~g~~p~~i 235 (326)
T PRK07452 213 GNTGKALALLDDLLDANEPALRI 235 (326)
T ss_pred CCHHHHHHHHHHHHHCCCcHHHH
Confidence 88899999999999998777544
No 446
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=25.28 E-value=2.6e+02 Score=20.09 Aligned_cols=47 Identities=6% Similarity=-0.007 Sum_probs=22.7
Q ss_pred HHhcCChhHHHHHHHHHHH----cCCCCC--HHHH--HHHHHHHHhcCChhhHHH
Q 036107 343 ACVRSEEGNALKLRQKIEE----DSCKPD--CETH--ARSLKMCCHKKRMKDGML 389 (441)
Q Consensus 343 ~~~~g~~~~a~~~~~~m~~----~g~~p~--~~t~--~~li~~~~~~g~~~~a~~ 389 (441)
..+.|++.+|.+-+.+..+ .+..+. ...+ -.+.......|..++|.+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~ 62 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQ 62 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3466777777666555432 222221 1112 222334445577777755
No 447
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=25.09 E-value=3.3e+02 Score=21.10 Aligned_cols=43 Identities=19% Similarity=0.139 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036107 265 KVDYTLKEMQEKGCKPS-VITCTIVMHALEKAKQIYEALKVYEK 307 (441)
Q Consensus 265 ~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 307 (441)
.+.++|+.|...|+--. +..|..-...+...|++.+|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666544322 44455555556666666666666653
No 448
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=24.90 E-value=5.3e+02 Score=23.47 Aligned_cols=117 Identities=9% Similarity=0.002 Sum_probs=62.5
Q ss_pred CCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHH
Q 036107 143 SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGW 222 (441)
Q Consensus 143 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 222 (441)
.+-...|.+.|++....+...+. ..++..-..++....+.|+.+.-..+++..+. ..+...-..++.+.
T Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~---------~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~--~~~~~~k~~~l~aL 211 (324)
T PF11838_consen 143 PECVAEARELFKAWLDGNDSPES---------SIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN--STSPEEKRRLLSAL 211 (324)
T ss_dssp HHHHHHHHHHHHHHHHTTT-TTS---------TS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT--TSTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCccccc---------ccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc--cCCHHHHHHHHHhh
Confidence 34566777777777763211000 12455556666666777776665555555543 23556677788888
Q ss_pred HhcCCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCC--HHHHHHHHHH
Q 036107 223 CKTRKSDYAQKAMKEMFQHG-FSPDGVSYTCFIEHYCREKD--FRKVDYTLKE 272 (441)
Q Consensus 223 ~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~--~~~a~~l~~~ 272 (441)
+...+.+...++++.....+ ++ +.. ...++.++...+. .+.+.+.+..
T Consensus 212 a~~~d~~~~~~~l~~~l~~~~v~-~~d-~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 212 ACSPDPELLKRLLDLLLSNDKVR-SQD-IRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp TT-S-HHHHHHHHHHHHCTSTS--TTT-HHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHcCCcccc-cHH-HHHHHHHHhcCChhhHHHHHHHHHH
Confidence 88888887778887777754 33 232 3444444442332 2555555443
No 449
>PRK12356 glutaminase; Reviewed
Probab=24.86 E-value=3e+02 Score=25.40 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=21.8
Q ss_pred ChhhHHHHhhHhHHhhhccCCCcchh
Q 036107 3 PKHDIWKLLSQSHLQKHHKINPLGCL 28 (441)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~n~~i~~ 28 (441)
|.++.|+-+.|....+..|.|++|.+
T Consensus 96 PSG~~FNsi~~Le~~~g~P~NPmINA 121 (319)
T PRK12356 96 PTGLPFNSVIAIELHGGKPLNPLVNA 121 (319)
T ss_pred CCCCCcchHHHhhccCCCCCCccccH
Confidence 66777887888888889999999987
No 450
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=24.66 E-value=4.9e+02 Score=23.00 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 036107 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR 259 (441)
Q Consensus 180 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 259 (441)
.....|..|.+.-++..|...++++-+ |-. +- .-|--|.+..+-.--.++.+-....++.-+.....+++ +..
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiE---PIQ-SR-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIE---PIQ-SR-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhh---hHH-hh-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 344556667777777666655555421 111 11 12233555555444455555555566666666666665 455
Q ss_pred cCCHHHHHHHHHHHHHc-C-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 036107 260 EKDFRKVDYTLKEMQEK-G-----------CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~-g-----------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 318 (441)
.||..+|+.-++.-... | -.|.+.....++..|.+ +++++|.+++.++-+.|+.|...
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHH
Confidence 78888888877765431 2 25777888888887765 78999999999999999988543
No 451
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.51 E-value=7e+02 Score=24.75 Aligned_cols=77 Identities=10% Similarity=0.171 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036107 125 GYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF 204 (441)
Q Consensus 125 g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 204 (441)
|+..+......+... -.|+...|...+++....+....+...+..++...+....-.++.+. ..|+.+.|+.+++.+
T Consensus 195 gi~id~~al~~La~~--s~G~lr~al~~Ldkl~~~~~~~It~~~V~~~lg~~~~~~vf~Li~ai-~~~d~~~al~~l~~L 271 (486)
T PRK14953 195 KIEYEEKALDLLAQA--SEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIVSQESVRKFLNLL-LESDVDEAIKFLRTL 271 (486)
T ss_pred CCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCCCHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence 444444444444332 23556666666655543332333333333333222333333333333 224455555555444
No 452
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.48 E-value=6.4e+02 Score=24.26 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=18.0
Q ss_pred cCChhHHHHHHHHHHHc-----CCCCCHHHHHHHHH
Q 036107 346 RSEEGNALKLRQKIEED-----SCKPDCETHARSLK 376 (441)
Q Consensus 346 ~g~~~~a~~~~~~m~~~-----g~~p~~~t~~~li~ 376 (441)
.+++...++++++++.. =+.|...+.-.+|+
T Consensus 317 ~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 317 SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 34566777777776542 14566665555554
No 453
>TIGR03814 Gln_ase glutaminase A. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli). Some species have two isozymes that may both be designated A (GlsA1 and GlsA2).
Probab=23.84 E-value=3.6e+02 Score=24.72 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=8.9
Q ss_pred CCCCCHHHHHHHHH
Q 036107 277 GCKPSVITCTIVMH 290 (441)
Q Consensus 277 g~~p~~~~~~~ll~ 290 (441)
|..|+-..||+++.
T Consensus 81 G~ePSG~~FNsi~~ 94 (300)
T TIGR03814 81 GVEPSGDPFNSIVQ 94 (300)
T ss_pred CCCCCCCCccchhh
Confidence 55666666666653
No 454
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=23.78 E-value=1.3e+02 Score=20.67 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=30.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383 (441)
Q Consensus 343 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 383 (441)
....|+.+.+.+++++..+.|..|.......+..+..+.|+
T Consensus 11 al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 11 ALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999888888888777777777665544
No 455
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=23.76 E-value=6.4e+02 Score=24.02 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=37.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHh--hHHHHHHHHHh--cCCHHHHHHHHHHHHHc
Q 036107 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGV--SYTCFIEHYCR--EKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 221 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~--~g~~~~a~~l~~~m~~~ 276 (441)
.+.+.+++..|.++|+++.+. ++++.. .|..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344678888888888888876 555544 45555555554 45678888888877654
No 456
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.57 E-value=9.5e+02 Score=25.93 Aligned_cols=196 Identities=12% Similarity=0.062 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC----CcHHHHHHHHHHHHhcCCH--HHHHHHHHHHhhCCCCCCHhhHH
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS----LSSQIFDVLIHGWCKTRKS--DYAQKAMKEMFQHGFSPDGVSYT 251 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~g~~p~~~~~~ 251 (441)
..-|..|+..|...|+.++|++++...-++.. --..-+-.+|.-+-+.+.. +-+++.-+-..+....-....++
T Consensus 504 ~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift 583 (877)
T KOG2063|consen 504 SKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFT 583 (877)
T ss_pred cccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeee
Confidence 35688999999999999999999988844321 1111233455555555543 44444443333321111111111
Q ss_pred H------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--------HHHHHHH-----HH
Q 036107 252 C------------FIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ--------IYEALKV-----YE 306 (441)
Q Consensus 252 ~------------li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~--------~~~a~~~-----~~ 306 (441)
. .+-.|......+-+...++.+....-.++..-.+.++.-|++.=+ -+++.+. ..
T Consensus 584 ~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~ 663 (877)
T KOG2063|consen 584 SEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLL 663 (877)
T ss_pred ccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHH
Confidence 1 223456667788889999998877666788888888887765422 1122222 22
Q ss_pred HHhh--CCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHH-------------cCCCCCHHHH
Q 036107 307 KMKS--DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE-------------DSCKPDCETH 371 (441)
Q Consensus 307 ~m~~--~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------------~g~~p~~~t~ 371 (441)
.+.+ ..+.|.. ++.-+-.. .+.-..++|.+ +.|+-++|+.++-.... ....++...|
T Consensus 664 ~~l~~s~~Y~p~~-----~L~~~~~~-~l~ee~aill~--rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y 735 (877)
T KOG2063|consen 664 DFLESSDLYDPQL-----LLERLNGD-ELYEERAILLG--RLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIY 735 (877)
T ss_pred HHhhhhcccCcch-----hhhhccch-hHHHHHHHHHh--hhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHH
Confidence 2222 2333332 11111110 00112233333 77777888877754432 1235578889
Q ss_pred HHHHHHHHhc
Q 036107 372 ARSLKMCCHK 381 (441)
Q Consensus 372 ~~li~~~~~~ 381 (441)
..++..|...
T Consensus 736 ~~lL~~~l~~ 745 (877)
T KOG2063|consen 736 LTLLRIYLNP 745 (877)
T ss_pred HHHHHHHhcc
Confidence 9999888766
No 457
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=23.45 E-value=2.9e+02 Score=19.89 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 268 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
++|+-....|+..|...|..+++-..-.--++...++++.|-.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666666666666666666655555555666666665543
No 458
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.38 E-value=2.8e+02 Score=19.65 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=28.3
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhc
Q 036107 118 TWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELS 160 (441)
Q Consensus 118 ~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~ 160 (441)
+....-.|+.|++ +.-+.++.-.++|+++++.|.+.|
T Consensus 25 ~~~~~~~gy~PtV------~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 25 EPKIDFSGYNPTV------IDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred cccCCcCCCCchH------HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444455666655 566888889999999999999988
No 459
>PRK12357 glutaminase; Reviewed
Probab=23.30 E-value=5e+02 Score=24.11 Aligned_cols=14 Identities=7% Similarity=0.192 Sum_probs=9.4
Q ss_pred CCCCCHHHHHHHHH
Q 036107 277 GCKPSVITCTIVMH 290 (441)
Q Consensus 277 g~~p~~~~~~~ll~ 290 (441)
|..|+-..||++++
T Consensus 97 G~EPSG~~FNSi~~ 110 (326)
T PRK12357 97 DVEPTGDAFNSIIR 110 (326)
T ss_pred CCCCCCCCcchhhh
Confidence 66677777777754
No 460
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=23.15 E-value=1e+02 Score=21.27 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=16.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107 260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 293 (441)
.|+.+.+.+++++..+.|..|.......+..+..
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~ 47 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAME 47 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3455555555555555555544444444444433
No 461
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=23.01 E-value=4.7e+02 Score=22.20 Aligned_cols=121 Identities=16% Similarity=0.121 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHH-HHHhcCC--HHHHH
Q 036107 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK--GCKPSVITCTIVMH-ALEKAKQ--IYEAL 302 (441)
Q Consensus 228 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~~~~~ll~-~~~~~~~--~~~a~ 302 (441)
-++++++-.++.. +....-.....|++++|..-++++.+. .++--...|..+.. +++..+. +-+|.
T Consensus 19 REE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~ 89 (204)
T COG2178 19 REEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEAT 89 (204)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHH
Confidence 3556666655543 444445556678899988888887543 12212334555554 4555443 44666
Q ss_pred HHHHHHhhCCCCCCHH----HHHHHHHHHHhc-CccchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036107 303 KVYEKMKSDDCLTDTS----FYSSLIFILSKA-VRFLIYNTMISSACVRSEEGNALKLRQKIEE 361 (441)
Q Consensus 303 ~~~~~m~~~g~~~~~~----~~~~li~~~~~~-g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 361 (441)
-++.-..+.+ .|+.. .+-..|.+.+.. |. .-...--..+.|+++.|.++++-|..
T Consensus 90 ~l~~~l~~~~-~ps~~EL~V~~~~YilGl~D~vGE---LrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 90 LLYSILKDGR-LPSPEELGVPPIAYILGLADAVGE---LRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHhcCC-CCCHHHcCCCHHHHHHHHHHHHHH---HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666555443 33322 111222222222 22 11222334567888888888888864
No 462
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=22.58 E-value=7.9e+02 Score=24.60 Aligned_cols=99 Identities=11% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCccchHHHHHHH
Q 036107 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDC-LTDTSFYSSLIFILSKAVRFLIYNTMISS 342 (441)
Q Consensus 264 ~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~~~~li~~ 342 (441)
+-...+-..+.+.|+..+......+..... |++..|...++.+...+- .....+...+-..++...+- .-.=+-.
T Consensus 191 el~~~L~~i~~~egi~ie~eAL~~Ia~~s~--GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~--~if~L~~ 266 (507)
T PRK06645 191 EIFKLLEYITKQENLKTDIEALRIIAYKSE--GSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSS--VIIEFVE 266 (507)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHH--HHHHHHH
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCC
Q 036107 343 ACVRSEEGNALKLRQKIEEDSCKP 366 (441)
Q Consensus 343 ~~~~g~~~~a~~~~~~m~~~g~~p 366 (441)
....|+..+|+.+++++...|..|
T Consensus 267 ai~~~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 267 YIIHRETEKAINLINKLYGSSVNL 290 (507)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCH
No 463
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=22.56 E-value=8.1e+02 Score=24.78 Aligned_cols=115 Identities=10% Similarity=0.112 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 208 (441)
....++.++..+... +.+...++++++.. . ....+..++++....|-.+...-+.+.++.+-
T Consensus 309 ~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~----------------~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~ 370 (574)
T smart00638 309 AAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-K----------------KKKARRIFLDAVAQAGTPPALKFIKQWIKNKK 370 (574)
T ss_pred hHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-C----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 445566666655433 55666666666544 2 14566777777777777777777777775533
Q ss_pred CCcHHHHHHHHHHH--HhcCCHHHHHHHHHHHhhCCCCCCH-------hhHHHHHHHHHhcC
Q 036107 209 SLSSQIFDVLIHGW--CKTRKSDYAQKAMKEMFQHGFSPDG-------VSYTCFIEHYCREK 261 (441)
Q Consensus 209 ~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g 261 (441)
.++...-..+.... ...-..+-...+++-+......+.. .+|.++++.++...
T Consensus 371 ~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~ 432 (574)
T smart00638 371 ITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNT 432 (574)
T ss_pred CCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 33333333333222 2233444444444333333444443 34555555444433
No 464
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=22.13 E-value=5.7e+02 Score=22.83 Aligned_cols=165 Identities=9% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 036107 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329 (441)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (441)
.+.+|..+.+.+....|..+.+.+.. .+-=.+..-.++...........-.. .+.......++.-+..
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~--l~~F~~~LE~LLh~vL~~e~~~~~~~----------~~~~~~L~~v~~ll~~ 152 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRS--LPYFSHALELLLHTVLEEEADSSEDS----------PIPDALLPRVISLLQE 152 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhcc--CCCcHHHHHHHHHHHHhhcccccccc----------cchHHHHHHHHHHHHc
Q ss_pred cCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCC-----
Q 036107 330 AVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP----- 404 (441)
Q Consensus 330 ~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p----- 404 (441)
... |-.++..|++.=+...--.+|... | .| ..++.-|.+.|+++.|-.++-++..+. +...
T Consensus 153 f~~---~l~Ivv~C~RKtE~~~W~~LF~~l---g-~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e--~~~~~~~~~ 218 (258)
T PF07064_consen 153 FPE---YLEIVVNCARKTEVRYWPYLFDYL---G-SP-----RDLFEECLENGNLKTAASYLLVLQNLE--GSSVVKDEE 218 (258)
T ss_pred Ccc---hHHHHHHHHHhhHHHHHHHHHHhc---C-CH-----HHHHHHHHHcCcHHHHHHHHHHHHhcC--CcchhhhHH
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhhcC
Q 036107 405 QESTHKMLAEELEKKSLGNAKERIDELLTHATEQRT 440 (441)
Q Consensus 405 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 440 (441)
+...-.-|+......++|+-+.++..-+....++..
T Consensus 219 ~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~~ 254 (258)
T PF07064_consen 219 SRQCALRLLVMALESGDWDLCFELVRFLKALDPEGN 254 (258)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcccC
No 465
>PRK00971 glutaminase; Provisional
Probab=22.09 E-value=4.3e+02 Score=24.34 Aligned_cols=24 Identities=4% Similarity=0.008 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHH
Q 036107 406 ESTHKMLAEELEKKSLGNAKERID 429 (441)
Q Consensus 406 ~~~~~~ll~~~~~~g~~~~a~~~~ 429 (441)
..+-..+.......|.+|.+-++.
T Consensus 227 ~~~~r~v~s~M~TcGmYD~SG~fa 250 (307)
T PRK00971 227 PRQARQVNALMLTCGMYDASGEFA 250 (307)
T ss_pred HHHHHHHHHHHHHcCCccchHHHH
Confidence 444455555556667776665543
No 466
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=22.02 E-value=3.6e+02 Score=20.50 Aligned_cols=35 Identities=6% Similarity=-0.057 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036107 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296 (441)
Q Consensus 261 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 296 (441)
|+++.....+=.+.. |...|...+...+.+....|
T Consensus 62 Ge~~~~~~~ll~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 62 GEYDDIYEALLKQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred CchHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 666666555544444 55556666666666554433
No 467
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=21.86 E-value=5e+02 Score=22.09 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHH-----CC------CCCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 036107 372 ARSLKMCCHKKRMKDGMLVLNLMREMLS-----KG------IVPQESTHKMLAEELEKKSLGNAKERIDEL 431 (441)
Q Consensus 372 ~~li~~~~~~g~~~~a~~~~~~~~~m~~-----~~------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 431 (441)
-+++..|.+.-++.+++++++.+.+++- +| ..+--...|.-...+.+.|..|-|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3456666777777777777666666542 12 334445667777778888888888877763
No 468
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=21.79 E-value=3.2e+02 Score=19.76 Aligned_cols=58 Identities=14% Similarity=0.065 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHH
Q 036107 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDE 430 (441)
Q Consensus 368 ~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 430 (441)
......+-.-|-+.|..+.+.+.+..+.+. .|-. .|...|+.++...+...-|++++.
T Consensus 32 d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~--eg~~---Atv~~Lv~AL~~c~l~~lAe~l~~ 89 (90)
T cd08780 32 DPAIDNLAYEYDREGLYEQAYQLLRRFIQS--EGKK---ATLQRLVQALEENGLTSLAEDLLG 89 (90)
T ss_pred hhHHHHHHhhcccccHHHHHHHHHHHHHHh--cccc---chHHHHHHHHHHccchHHHHHHhc
Confidence 334455666777778888887766666663 3433 677888888888888777777653
No 469
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=21.29 E-value=1.9e+02 Score=20.44 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=22.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036107 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294 (441)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 294 (441)
+......+++.+.+ ++++++...+.++...|+.++ ...+.+......
T Consensus 4 ~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~-~Il~~l~~~l~~ 50 (89)
T PF08542_consen 4 PPEVIEEILESCLN-GDFKEARKKLYELLVEGYSAS-DILKQLHEVLVE 50 (89)
T ss_dssp -HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--HH-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHH
Confidence 33444455554444 467777777776666666543 233333333333
No 470
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=21.05 E-value=5.2e+02 Score=21.99 Aligned_cols=196 Identities=18% Similarity=0.147 Sum_probs=103.1
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcC---CCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHH
Q 036107 124 TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSN---GYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKV 200 (441)
Q Consensus 124 ~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~---~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 200 (441)
.|..+|+..+|.++..+.+..-...-+..+-.|+.+.. ...++ ..|......=+..|-+.|++...-.+
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~--------~~~l~~~~~eie~Ckek~DW~klg~l 73 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNW--------LSDLASAVVEIEHCKEKGDWTKLGNL 73 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchH--------HHHHHHHHHHHHHHhhhccHHHHhhH
Confidence 46778888899888888766433333333333333210 11111 01344444555667777777666666
Q ss_pred HHHhhhCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 036107 201 FLKFKDCISL--SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278 (441)
Q Consensus 201 ~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 278 (441)
|-..+.+... +...+..- -|+.+.++-++ +| .+-|-..-.+-++.-..+++.+.+-
T Consensus 74 y~nv~~gce~~~dlq~~~~~-----------va~~Ltkd~Kd---k~-~vPFceFAetV~k~~q~~e~dK~~L------- 131 (233)
T PF14669_consen 74 YINVKMGCEKFADLQRFCAC-----------VAEALTKDSKD---KP-GVPFCEFAETVCKDPQNDEVDKTLL------- 131 (233)
T ss_pred HhhHHhhcCCHHHHHHHHHH-----------HHHHHHhcccc---cC-CCCHHHHHHHHhcCCccchhhhhhh-------
Confidence 5544332111 11111110 12333333332 12 2335555555555545555433321
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc----cchHHHHHHHHHhcCChhHHHH
Q 036107 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR----FLIYNTMISSACVRSEEGNALK 354 (441)
Q Consensus 279 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----~~~~~~li~~~~~~g~~~~a~~ 354 (441)
-.+-.++|-.|-+.-++.++.++++.|.+..+..+. +.++....+ ...-|.....+.+.|.++.|+.
T Consensus 132 ---GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~------LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~ 202 (233)
T PF14669_consen 132 ---GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTS------LKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALW 202 (233)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------ccCccCccccCchhhhHHHHHHHHHHcCCchHHHH
Confidence 123456777788888899999999888775443221 111111111 1456777778888888888888
Q ss_pred HHHH
Q 036107 355 LRQK 358 (441)
Q Consensus 355 ~~~~ 358 (441)
++++
T Consensus 203 vLre 206 (233)
T PF14669_consen 203 VLRE 206 (233)
T ss_pred HHhc
Confidence 8874
No 471
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.05 E-value=4.8e+02 Score=25.12 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH--cC----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 249 SYTCFIEHYCREKDFRKVDYTLKEMQE--KG----C-KPSVITCTIVMHALEKAKQIYEALKVYEKMK 309 (441)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~l~~~m~~--~g----~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 309 (441)
+...|++.++-.||+..|+++++.+.- .+ + .-...+|--+--+|.-.+++.+|.++|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888899888888877632 11 1 1123456666677788888888888888753
No 472
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=21.02 E-value=7e+02 Score=24.10 Aligned_cols=105 Identities=11% Similarity=0.056 Sum_probs=63.3
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCC
Q 036107 168 AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH--GFSP 245 (441)
Q Consensus 168 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p 245 (441)
.+..+-.-.+..--+..+.++...++.+..-..|-...--........-.|++.++-.|+.....+.++.|... |-.|
T Consensus 191 iLnil~slv~ksqi~~ql~~~~s~~dp~~va~~~g~s~~y~~LgyfsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p 270 (525)
T KOG3677|consen 191 ILNILHSLVDKSQISIQLTASVSNKDPALVALIFGASQPYANLGYFSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEP 270 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccccHHHhhhHHHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCccc
Confidence 33333333345555556666666777766655554332111223334456788888899988888899888763 4444
Q ss_pred CH-hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107 246 DG-VSYTCFIEHYCREKDFRKVDYTLKEM 273 (441)
Q Consensus 246 ~~-~~~~~li~~~~~~g~~~~a~~l~~~m 273 (441)
.. +| --+--+|.-.|++.+|.+.|-..
T Consensus 271 ~c~VT-Y~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 271 MCRVT-YQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred ceeEe-eehhHHHHHHHHHHHHHHHHHHH
Confidence 43 33 33445566677888888887665
No 473
>KOG1333 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.97 E-value=5.2e+02 Score=22.01 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=9.5
Q ss_pred HHhcCCHHHHHHHHHHHh
Q 036107 222 WCKTRKSDYAQKAMKEMF 239 (441)
Q Consensus 222 ~~~~~~~~~a~~~~~~m~ 239 (441)
+...++.+++.+.|.+|.
T Consensus 99 ~~q~nr~~K~~EFF~K~a 116 (241)
T KOG1333|consen 99 TIQTNRNDKAQEFFAKQA 116 (241)
T ss_pred hhhcCChHHHHHHHHHHH
Confidence 344455555555555553
No 474
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=20.96 E-value=7.4e+02 Score=23.66 Aligned_cols=55 Identities=7% Similarity=0.054 Sum_probs=38.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHH----HHHHHHHh--cCCHHHHHHHHHHH
Q 036107 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT----CFIEHYCR--EKDFRKVDYTLKEM 273 (441)
Q Consensus 219 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~li~~~~~--~g~~~~a~~l~~~m 273 (441)
+..+.+.+++..|.++|+++.+..+.|....+- .+..+|.. .-++++|.+.++.+
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~ 197 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDP 197 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhc
Confidence 345667899999999999999887666555433 33344433 44678888888763
No 475
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=20.58 E-value=3.4e+02 Score=23.42 Aligned_cols=82 Identities=9% Similarity=0.115 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhCCCC-------CCHhhHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 036107 228 SDYAQKAMKEMFQHGFS-------PDGVSYTCFIEHYCREK---------DFRKVDYTLKEMQEKGCKP-SVITCTIVMH 290 (441)
Q Consensus 228 ~~~a~~~~~~m~~~g~~-------p~~~~~~~li~~~~~~g---------~~~~a~~l~~~m~~~g~~p-~~~~~~~ll~ 290 (441)
.+.|..++.+|--..++ -...-|..+-.+|++.| +.+...++++...+.|++- =.+.|+++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 56777777777543221 13445777777787776 3455667777777777532 2467788887
Q ss_pred HHHhcCCHHHHHHHHHHHh
Q 036107 291 ALEKAKQIYEALKVYEKMK 309 (441)
Q Consensus 291 ~~~~~~~~~~a~~~~~~m~ 309 (441)
--.-.-++++..+++..++
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 6666677888888887665
No 476
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.57 E-value=1.4e+02 Score=29.53 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=48.0
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHH---HHHHHhcCCHHHHHHH
Q 036107 233 KAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC-----KPSVITCTIV---MHALEKAKQIYEALKV 304 (441)
Q Consensus 233 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-----~p~~~~~~~l---l~~~~~~~~~~~a~~~ 304 (441)
-+++++...||+||..||++ .-+++...+-..|.++|. .|....-.-- +..-++...+++-.++
T Consensus 254 ~IleDl~~LgIkpd~~TyTS--------DyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~i 325 (712)
T KOG1147|consen 254 VILEDLSLLGIKPDRVTYTS--------DYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRI 325 (712)
T ss_pred HHHHHHHHhCcCcceeeech--------hhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHH
Confidence 46777778899999999885 456666666667766653 1222222111 3345677889999999
Q ss_pred HHHHhh
Q 036107 305 YEKMKS 310 (441)
Q Consensus 305 ~~~m~~ 310 (441)
|++|.+
T Consensus 326 w~EM~k 331 (712)
T KOG1147|consen 326 WEEMKK 331 (712)
T ss_pred HHHHhc
Confidence 999987
No 477
>PHA02940 hypothetical protein; Provisional
Probab=20.43 E-value=6e+02 Score=22.42 Aligned_cols=22 Identities=0% Similarity=-0.044 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 036107 336 YNTMISSACVRSEEGNALKLRQ 357 (441)
Q Consensus 336 ~~~li~~~~~~g~~~~a~~~~~ 357 (441)
...++.-|++.++.++=.-+-+
T Consensus 145 v~~la~~yvq~vk~d~r~~~a~ 166 (315)
T PHA02940 145 VILLAGRYVQDVKKDDRRTIAN 166 (315)
T ss_pred HHHHHHHHHHHccccHHHHHHH
Confidence 5566666777666655433333
No 478
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=20.30 E-value=3.8e+02 Score=22.84 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036107 335 IYNTMISSACVRSEEGNALKLRQKIEE 361 (441)
Q Consensus 335 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 361 (441)
..+.++..+...|+++.|.+.|.-+..
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR 69 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIR 69 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 345555566666666666666655553
No 479
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=20.27 E-value=3.9e+02 Score=20.23 Aligned_cols=81 Identities=9% Similarity=0.022 Sum_probs=40.1
Q ss_pred cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036107 191 RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270 (441)
Q Consensus 191 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~ 270 (441)
....++|..+.+.+...-.....+--+-+..+.+.|++++| +..- ...-.||...|-+|- -.+.|--+++...+
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A--Ll~~--~~~~~pdL~p~~AL~--a~klGL~~~~e~~l 92 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA--LLLP--QCHCYPDLEPWAALC--AWKLGLASALESRL 92 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH--HHHH--TTS--GGGHHHHHHH--HHHCT-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH--HHhc--ccCCCccHHHHHHHH--HHhhccHHHHHHHH
Confidence 34566777777777542223333333334556667777777 1111 112346666555543 35666666666666
Q ss_pred HHHHHcC
Q 036107 271 KEMQEKG 277 (441)
Q Consensus 271 ~~m~~~g 277 (441)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 6665544
Done!