Query 036107
Match_columns 441
No_of_seqs 382 out of 2989
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 16:08:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.5E-33 5.2E-38 274.4 27.6 196 122-330 17-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 6.2E-34 2.1E-38 277.1 24.3 205 196-419 8-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 2.4E-31 8.2E-36 267.3 29.2 404 20-437 85-581 (597)
4 2xpi_A Anaphase-promoting comp 100.0 1.8E-27 6E-32 239.1 30.9 371 54-436 82-546 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 5.3E-20 1.8E-24 174.5 34.3 359 29-436 9-369 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.3E-18 4.3E-23 165.0 32.9 342 29-420 43-387 (388)
7 3spa_A Mtrpol, DNA-directed RN 99.8 4.7E-21 1.6E-25 192.2 10.9 151 177-332 126-287 (1134)
8 2y4t_A DNAJ homolog subfamily 99.8 1.1E-17 3.7E-22 161.7 33.2 313 93-436 27-359 (450)
9 3spa_A Mtrpol, DNA-directed RN 99.8 9.9E-21 3.4E-25 189.9 11.0 125 207-331 122-250 (1134)
10 2y4t_A DNAJ homolog subfamily 99.8 1.4E-16 4.7E-21 153.9 30.6 332 55-413 25-370 (450)
11 1fch_A Peroxisomal targeting s 99.8 1.1E-15 3.8E-20 143.3 29.2 298 101-431 34-355 (368)
12 2gw1_A Mitochondrial precursor 99.7 8.2E-16 2.8E-20 150.8 28.7 358 64-436 14-479 (514)
13 2gw1_A Mitochondrial precursor 99.7 2.7E-15 9.3E-20 147.1 29.5 318 96-436 10-445 (514)
14 3ieg_A DNAJ homolog subfamily 99.7 1E-13 3.6E-18 128.9 36.4 313 93-436 4-336 (359)
15 4eqf_A PEX5-related protein; a 99.7 4.5E-15 1.5E-19 139.2 26.9 269 129-431 64-352 (365)
16 3hym_B Cell division cycle pro 99.7 2.6E-14 8.9E-19 131.5 29.0 269 128-433 20-297 (330)
17 3cv0_A Peroxisome targeting si 99.7 9.4E-14 3.2E-18 127.6 29.1 267 130-431 21-311 (327)
18 3ieg_A DNAJ homolog subfamily 99.7 6.5E-13 2.2E-17 123.5 34.2 327 62-416 9-350 (359)
19 3hym_B Cell division cycle pro 99.6 1.2E-13 4.2E-18 127.0 27.7 284 98-423 28-322 (330)
20 1b89_A Protein (clathrin heavy 99.6 5.1E-16 1.7E-20 144.9 11.5 282 69-427 16-303 (449)
21 3fp2_A TPR repeat-containing p 99.6 5.9E-13 2E-17 131.3 33.2 236 193-436 217-492 (537)
22 4eqf_A PEX5-related protein; a 99.6 6.3E-14 2.1E-18 131.4 22.2 257 98-390 71-349 (365)
23 1fch_A Peroxisomal targeting s 99.6 2E-13 7E-18 127.8 25.1 260 97-392 69-354 (368)
24 3mkr_A Coatomer subunit epsilo 99.6 1.1E-12 3.6E-17 119.0 28.9 258 137-436 6-265 (291)
25 3cv0_A Peroxisome targeting si 99.6 1.8E-13 6E-18 125.7 21.9 255 101-392 30-310 (327)
26 3mkr_A Coatomer subunit epsilo 99.6 1.3E-12 4.4E-17 118.4 26.8 269 69-387 12-284 (291)
27 1b89_A Protein (clathrin heavy 99.6 2.1E-13 7.3E-18 127.3 21.6 155 180-354 124-303 (449)
28 3fp2_A TPR repeat-containing p 99.6 1.2E-12 4.1E-17 129.1 27.2 299 93-437 26-409 (537)
29 2ho1_A Type 4 fimbrial biogene 99.5 1.3E-11 4.4E-16 108.9 27.6 209 130-372 37-246 (252)
30 2vq2_A PILW, putative fimbrial 99.5 1.5E-11 5.1E-16 106.2 26.7 210 129-371 7-218 (225)
31 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.9E-12 1.3E-16 113.8 19.2 254 100-389 13-267 (275)
32 3uq3_A Heat shock protein STI1 99.5 5.6E-11 1.9E-15 104.9 26.2 224 130-396 5-235 (258)
33 2vq2_A PILW, putative fimbrial 99.5 3.8E-11 1.3E-15 103.6 24.5 201 177-395 7-209 (225)
34 2pl2_A Hypothetical conserved 99.5 1.2E-11 4.2E-16 106.8 21.1 199 127-360 2-212 (217)
35 2xm6_A Protein corresponding t 99.4 6.6E-09 2.3E-13 101.3 41.8 326 69-436 56-433 (490)
36 2ho1_A Type 4 fimbrial biogene 99.4 4.8E-11 1.6E-15 105.3 24.0 198 178-394 37-235 (252)
37 3u4t_A TPR repeat-containing p 99.4 1.3E-10 4.5E-15 103.6 26.7 240 178-437 3-252 (272)
38 3uq3_A Heat shock protein STI1 99.4 5.4E-11 1.9E-15 105.0 23.9 227 178-436 5-237 (258)
39 2q7f_A YRRB protein; TPR, prot 99.4 4.5E-11 1.5E-15 104.6 21.2 201 129-362 22-222 (243)
40 1ouv_A Conserved hypothetical 99.4 2.7E-09 9.1E-14 95.4 32.8 218 129-392 5-246 (273)
41 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.6E-11 5.3E-16 109.8 18.0 251 141-429 16-269 (275)
42 1xi4_A Clathrin heavy chain; a 99.4 6.6E-10 2.3E-14 115.9 31.9 269 104-427 1088-1376(1630)
43 1ouv_A Conserved hypothetical 99.4 2.7E-09 9.1E-14 95.4 32.6 224 177-436 5-252 (273)
44 1xi4_A Clathrin heavy chain; a 99.4 7.3E-10 2.5E-14 115.6 31.3 310 57-432 986-1306(1630)
45 2pl2_A Hypothetical conserved 99.4 1.3E-10 4.4E-15 100.4 21.6 192 177-389 4-206 (217)
46 2xm6_A Protein corresponding t 99.4 6.3E-08 2.1E-12 94.3 42.8 293 100-434 51-395 (490)
47 2q7f_A YRRB protein; TPR, prot 99.3 2E-10 6.9E-15 100.4 21.5 199 94-312 25-223 (243)
48 4a1s_A PINS, partner of inscut 99.3 1E-10 3.5E-15 111.1 21.1 284 131-436 49-373 (411)
49 4g1t_A Interferon-induced prot 99.3 1.8E-09 6E-14 104.6 28.5 334 93-435 52-459 (472)
50 3ro2_A PINS homolog, G-protein 99.3 2.3E-10 7.8E-15 104.9 21.1 285 131-437 6-334 (338)
51 3u4t_A TPR repeat-containing p 99.3 6.2E-10 2.1E-14 99.2 22.9 230 131-393 4-246 (272)
52 3sf4_A G-protein-signaling mod 99.3 4.5E-10 1.5E-14 106.2 23.1 287 128-436 7-337 (406)
53 2ooe_A Cleavage stimulation fa 99.3 2.4E-09 8.2E-14 105.5 29.1 372 31-437 24-494 (530)
54 2h6f_A Protein farnesyltransfe 99.3 2.6E-09 8.8E-14 100.2 26.1 249 130-417 97-364 (382)
55 3nf1_A KLC 1, kinesin light ch 99.3 1.8E-10 6.3E-15 104.6 17.9 246 129-392 26-302 (311)
56 3nf1_A KLC 1, kinesin light ch 99.3 1E-10 3.5E-15 106.3 15.8 242 177-437 26-309 (311)
57 3vtx_A MAMA; tetratricopeptide 99.3 1.8E-09 6.3E-14 90.2 22.4 167 129-311 4-170 (184)
58 2ooe_A Cleavage stimulation fa 99.2 1.5E-08 5.2E-13 99.8 30.8 339 56-435 13-454 (530)
59 2ond_A Cleavage stimulation fa 99.2 2E-08 6.9E-13 91.5 29.1 230 131-394 9-267 (308)
60 2h6f_A Protein farnesyltransfe 99.2 3.4E-09 1.1E-13 99.4 23.4 230 177-432 96-344 (382)
61 3sf4_A G-protein-signaling mod 99.2 1.6E-10 5.3E-15 109.4 14.2 303 98-422 15-363 (406)
62 4a1s_A PINS, partner of inscut 99.2 3E-10 1E-14 107.9 15.6 272 97-393 53-368 (411)
63 2ond_A Cleavage stimulation fa 99.2 5.5E-08 1.9E-12 88.6 29.8 219 195-437 33-272 (308)
64 3as5_A MAMA; tetratricopeptide 99.2 3.5E-09 1.2E-13 88.0 18.9 166 130-311 8-173 (186)
65 3vtx_A MAMA; tetratricopeptide 99.1 1.4E-08 4.8E-13 84.7 21.7 167 177-362 4-170 (184)
66 3ro2_A PINS homolog, G-protein 99.1 5.6E-10 1.9E-14 102.3 13.8 273 99-393 12-328 (338)
67 3as5_A MAMA; tetratricopeptide 99.1 1.6E-08 5.4E-13 83.9 21.2 166 178-362 8-173 (186)
68 4abn_A Tetratricopeptide repea 99.1 5.9E-09 2E-13 101.1 20.8 210 146-389 84-313 (474)
69 3ulq_A Response regulator aspa 99.1 8.1E-09 2.8E-13 97.2 20.2 236 184-437 109-370 (383)
70 1hz4_A MALT regulatory protein 99.1 1E-07 3.4E-12 89.2 27.0 284 134-437 18-324 (373)
71 3q15_A PSP28, response regulat 99.0 7.1E-08 2.4E-12 90.5 24.3 317 93-437 11-367 (378)
72 4abn_A Tetratricopeptide repea 99.0 1E-08 3.5E-13 99.5 18.6 214 193-432 83-318 (474)
73 3edt_B KLC 2, kinesin light ch 99.0 9.8E-09 3.3E-13 91.5 17.2 230 189-434 12-280 (283)
74 4gyw_A UDP-N-acetylglucosamine 99.0 2.3E-08 7.8E-13 101.4 20.9 168 126-310 4-173 (723)
75 1hz4_A MALT regulatory protein 99.0 2.2E-07 7.7E-12 86.8 25.7 304 100-427 22-357 (373)
76 3ulq_A Response regulator aspa 99.0 4.6E-08 1.6E-12 92.0 20.5 240 136-399 109-370 (383)
77 4g1t_A Interferon-induced prot 99.0 1.1E-07 3.6E-12 92.0 23.6 334 56-409 51-469 (472)
78 3edt_B KLC 2, kinesin light ch 99.0 1.7E-08 5.9E-13 89.9 16.5 171 129-310 42-280 (283)
79 2fo7_A Synthetic consensus TPR 98.9 7.2E-08 2.5E-12 75.1 16.8 130 180-311 3-132 (136)
80 2fo7_A Synthetic consensus TPR 98.9 8.5E-08 2.9E-12 74.7 16.9 131 131-276 2-132 (136)
81 3q15_A PSP28, response regulat 98.9 4.8E-07 1.6E-11 84.8 23.8 235 138-395 109-363 (378)
82 4gyw_A UDP-N-acetylglucosamine 98.9 1.2E-07 4.1E-12 96.1 20.2 165 177-361 8-173 (723)
83 4i17_A Hypothetical protein; T 98.8 1.3E-06 4.4E-11 75.4 22.2 160 211-383 6-168 (228)
84 4i17_A Hypothetical protein; T 98.8 1.2E-06 4.1E-11 75.6 21.7 133 177-311 6-146 (228)
85 1qqe_A Vesicular transport pro 98.7 1.5E-06 5.1E-11 78.3 20.1 218 105-360 30-267 (292)
86 3e4b_A ALGK; tetratricopeptide 98.7 8.7E-07 3E-11 85.2 19.4 220 177-434 140-386 (452)
87 3mv2_B Coatomer subunit epsilo 98.7 2.4E-06 8.2E-11 76.4 20.5 224 182-437 49-284 (310)
88 3qky_A Outer membrane assembly 98.7 1.4E-06 4.8E-11 77.0 17.9 173 177-368 14-228 (261)
89 1qqe_A Vesicular transport pro 98.6 5.6E-06 1.9E-10 74.5 21.2 190 186-387 45-259 (292)
90 2yhc_A BAMD, UPF0169 lipoprote 98.6 5.5E-06 1.9E-10 71.4 19.9 172 129-313 3-215 (225)
91 3qky_A Outer membrane assembly 98.6 3.2E-06 1.1E-10 74.6 18.0 170 129-311 14-224 (261)
92 3urz_A Uncharacterized protein 98.6 4.2E-06 1.4E-10 71.2 17.9 169 131-319 5-192 (208)
93 3mv2_B Coatomer subunit epsilo 98.6 1.2E-05 4.2E-10 71.9 20.7 184 197-407 85-287 (310)
94 2r5s_A Uncharacterized protein 98.6 2.2E-06 7.5E-11 70.8 14.9 161 133-310 9-172 (176)
95 2vsy_A XCC0866; transferase, g 98.5 3.1E-06 1.1E-10 83.9 17.9 154 143-312 2-158 (568)
96 3qou_A Protein YBBN; thioredox 98.5 6.4E-06 2.2E-10 73.9 17.8 165 129-309 116-282 (287)
97 3e4b_A ALGK; tetratricopeptide 98.5 0.00026 9E-09 67.8 29.9 224 177-435 175-421 (452)
98 3urz_A Uncharacterized protein 98.5 1.1E-05 3.8E-10 68.5 18.1 112 183-296 9-136 (208)
99 2r5s_A Uncharacterized protein 98.5 5.3E-06 1.8E-10 68.4 15.7 162 180-360 8-171 (176)
100 3u3w_A Transcriptional activat 98.5 6.2E-05 2.1E-09 67.6 23.5 165 181-360 78-264 (293)
101 2ifu_A Gamma-SNAP; membrane fu 98.5 1.5E-05 5.2E-10 72.2 19.4 169 132-309 38-222 (307)
102 2qfc_A PLCR protein; TPR, HTH, 98.5 6.1E-05 2.1E-09 67.6 22.9 173 130-310 75-265 (293)
103 2yhc_A BAMD, UPF0169 lipoprote 98.4 1.7E-05 5.9E-10 68.2 18.3 170 177-363 3-214 (225)
104 3dra_A Protein farnesyltransfe 98.4 0.00015 5E-09 65.3 24.6 223 139-394 42-284 (306)
105 1hh8_A P67PHOX, NCF-2, neutrop 98.4 3.4E-05 1.2E-09 65.4 19.3 130 179-312 7-151 (213)
106 3rjv_A Putative SEL1 repeat pr 98.4 3.5E-05 1.2E-09 65.7 19.3 176 148-363 4-198 (212)
107 3rjv_A Putative SEL1 repeat pr 98.4 2.2E-05 7.5E-10 66.9 17.9 164 129-313 17-199 (212)
108 3qou_A Protein YBBN; thioredox 98.4 1.1E-05 3.7E-10 72.5 16.6 165 177-360 116-282 (287)
109 1hh8_A P67PHOX, NCF-2, neutrop 98.4 4.4E-05 1.5E-09 64.7 19.7 129 214-362 8-150 (213)
110 2vsy_A XCC0866; transferase, g 98.4 9.5E-06 3.3E-10 80.4 17.6 154 191-363 2-158 (568)
111 2pzi_A Probable serine/threoni 98.4 3.1E-06 1E-10 85.8 14.1 153 141-311 402-563 (681)
112 3gw4_A Uncharacterized protein 98.4 7.6E-06 2.6E-10 68.8 13.9 160 189-360 3-174 (203)
113 4ga2_A E3 SUMO-protein ligase 98.4 3E-06 1E-10 68.0 10.8 142 187-331 6-148 (150)
114 1na0_A Designed protein CTPR3; 98.3 2.5E-05 8.7E-10 59.4 15.4 98 178-276 9-106 (125)
115 4ga2_A E3 SUMO-protein ligase 98.3 1.1E-05 3.8E-10 64.6 13.6 143 98-261 3-148 (150)
116 3u3w_A Transcriptional activat 98.3 2.2E-05 7.4E-10 70.6 17.1 171 132-310 77-265 (293)
117 2ifu_A Gamma-SNAP; membrane fu 98.3 1.4E-05 4.8E-10 72.5 15.7 197 95-304 39-254 (307)
118 4e6h_A MRNA 3'-END-processing 98.3 9.7E-05 3.3E-09 74.1 22.9 217 129-378 342-584 (679)
119 1a17_A Serine/threonine protei 98.3 3.1E-05 1E-09 62.5 16.1 132 177-310 12-145 (166)
120 2pzi_A Probable serine/threoni 98.3 4.9E-06 1.7E-10 84.4 13.5 177 103-297 402-583 (681)
121 1a17_A Serine/threonine protei 98.3 3.2E-05 1.1E-09 62.4 16.0 131 130-275 13-145 (166)
122 3gw4_A Uncharacterized protein 98.3 8E-06 2.7E-10 68.6 12.8 156 141-310 3-175 (203)
123 1na0_A Designed protein CTPR3; 98.3 3.6E-05 1.2E-09 58.5 15.1 114 130-258 9-122 (125)
124 2vyi_A SGTA protein; chaperone 98.2 3.8E-05 1.3E-09 58.9 14.2 119 177-297 11-129 (131)
125 2qfc_A PLCR protein; TPR, HTH, 98.2 0.00064 2.2E-08 60.9 23.8 168 178-360 75-264 (293)
126 3dra_A Protein farnesyltransfe 98.2 0.0007 2.4E-08 60.9 23.6 223 189-434 44-286 (306)
127 2vyi_A SGTA protein; chaperone 98.2 5.9E-05 2E-09 57.8 13.7 120 129-263 11-130 (131)
128 2lni_A Stress-induced-phosphop 98.1 6.2E-05 2.1E-09 58.0 13.6 98 129-240 15-112 (133)
129 4f3v_A ESX-1 secretion system 98.1 0.00023 7.9E-09 62.7 18.3 197 142-371 18-244 (282)
130 4e6h_A MRNA 3'-END-processing 98.1 0.00042 1.4E-08 69.5 22.4 230 131-392 303-565 (679)
131 3gyz_A Chaperone protein IPGC; 98.1 6.6E-05 2.3E-09 60.0 13.5 97 130-240 36-132 (151)
132 2lni_A Stress-induced-phosphop 98.1 5.6E-05 1.9E-09 58.3 12.9 97 178-275 16-112 (133)
133 2e2e_A Formate-dependent nitri 98.1 2.9E-05 1E-09 63.8 11.3 121 141-276 21-144 (177)
134 4gco_A Protein STI-1; structur 98.1 0.00012 4.1E-09 56.5 14.0 95 132-240 15-109 (126)
135 3q7a_A Farnesyltransferase alp 98.1 0.0027 9.2E-08 57.8 24.6 244 132-394 56-328 (349)
136 2e2e_A Formate-dependent nitri 98.1 5.7E-05 2E-09 62.0 12.5 122 189-312 21-145 (177)
137 3gyz_A Chaperone protein IPGC; 98.0 9.2E-05 3.2E-09 59.2 12.3 94 215-310 39-132 (151)
138 2c2l_A CHIP, carboxy terminus 98.0 0.00011 3.7E-09 65.6 14.1 162 131-310 5-198 (281)
139 4gco_A Protein STI-1; structur 98.0 0.00024 8.3E-09 54.7 14.3 94 181-275 16-109 (126)
140 1p5q_A FKBP52, FK506-binding p 98.0 0.0002 6.9E-09 65.7 15.8 131 177-309 146-292 (336)
141 1elr_A TPR2A-domain of HOP; HO 98.0 0.0001 3.5E-09 56.5 11.4 98 179-276 5-108 (131)
142 1elw_A TPR1-domain of HOP; HOP 97.9 0.00043 1.5E-08 51.7 14.8 96 131-240 5-100 (118)
143 1elr_A TPR2A-domain of HOP; HO 97.9 0.00013 4.4E-09 55.9 11.6 110 130-255 4-120 (131)
144 2fbn_A 70 kDa peptidylprolyl i 97.9 3.1E-05 1.1E-09 65.0 8.5 125 186-311 12-151 (198)
145 2vgx_A Chaperone SYCD; alterna 97.9 7.3E-05 2.5E-09 59.6 10.3 99 211-311 20-118 (148)
146 1elw_A TPR1-domain of HOP; HOP 97.9 0.00055 1.9E-08 51.1 14.9 94 215-310 7-100 (118)
147 3upv_A Heat shock protein STI1 97.9 0.00038 1.3E-08 53.3 14.1 93 182-275 8-100 (126)
148 2kck_A TPR repeat; tetratricop 97.9 0.00014 4.7E-09 54.0 11.2 95 132-240 8-105 (112)
149 1p5q_A FKBP52, FK506-binding p 97.9 0.00023 7.9E-09 65.3 14.9 145 129-274 146-292 (336)
150 4b4t_Q 26S proteasome regulato 97.9 0.00045 1.5E-08 65.5 17.5 211 138-360 12-243 (434)
151 2vgx_A Chaperone SYCD; alterna 97.9 0.00024 8.1E-09 56.5 13.2 97 130-240 21-117 (148)
152 2xcb_A PCRH, regulatory protei 97.9 0.00025 8.6E-09 55.8 12.7 96 131-240 19-114 (142)
153 3q7a_A Farnesyltransferase alp 97.9 0.0047 1.6E-07 56.2 22.5 225 188-433 64-329 (349)
154 2kck_A TPR repeat; tetratricop 97.9 0.00015 5.1E-09 53.8 10.7 96 215-311 9-106 (112)
155 3q49_B STIP1 homology and U bo 97.8 0.00048 1.7E-08 53.4 13.9 96 178-274 9-104 (137)
156 4b4t_Q 26S proteasome regulato 97.8 0.0015 5.3E-08 61.7 19.9 164 186-360 12-202 (434)
157 2dba_A Smooth muscle cell asso 97.8 0.00096 3.3E-08 52.2 15.7 99 210-311 26-128 (148)
158 2fbn_A 70 kDa peptidylprolyl i 97.8 0.00035 1.2E-08 58.4 13.6 134 177-312 37-187 (198)
159 3upv_A Heat shock protein STI1 97.8 0.00046 1.6E-08 52.8 13.0 99 211-311 3-101 (126)
160 4gcn_A Protein STI-1; structur 97.8 0.0004 1.4E-08 53.5 12.6 96 180-275 10-111 (127)
161 3ro3_A PINS homolog, G-protein 97.8 0.00022 7.6E-09 56.7 11.3 133 178-310 9-157 (164)
162 3sz7_A HSC70 cochaperone (SGT) 97.8 0.00065 2.2E-08 54.8 14.0 99 177-276 10-108 (164)
163 3q49_B STIP1 homology and U bo 97.8 0.00057 2E-08 52.9 13.1 101 209-311 6-106 (137)
164 3sz7_A HSC70 cochaperone (SGT) 97.8 0.00045 1.6E-08 55.7 12.8 99 129-241 10-108 (164)
165 4gcn_A Protein STI-1; structur 97.7 0.0013 4.4E-08 50.6 14.4 107 130-252 8-121 (127)
166 2xcb_A PCRH, regulatory protei 97.7 0.00048 1.6E-08 54.1 12.1 94 215-310 21-114 (142)
167 3ro3_A PINS homolog, G-protein 97.7 0.00053 1.8E-08 54.5 12.4 138 130-275 9-157 (164)
168 2dba_A Smooth muscle cell asso 97.7 0.0014 4.9E-08 51.2 14.5 101 129-240 27-127 (148)
169 4f3v_A ESX-1 secretion system 97.7 0.0015 5.1E-08 57.6 15.4 202 104-312 18-238 (282)
170 2c2l_A CHIP, carboxy terminus 97.6 0.0031 1.1E-07 56.0 17.3 99 177-276 3-101 (281)
171 2uy1_A Cleavage stimulation fa 97.6 0.048 1.6E-06 52.6 26.6 298 106-431 28-379 (493)
172 1hxi_A PEX5, peroxisome target 97.6 0.00079 2.7E-08 51.3 11.1 92 135-240 22-113 (121)
173 3k9i_A BH0479 protein; putativ 97.5 0.00025 8.6E-09 53.6 7.6 85 225-310 3-89 (117)
174 2xev_A YBGF; tetratricopeptide 97.5 0.0021 7.3E-08 49.0 13.1 90 185-276 9-105 (129)
175 2xev_A YBGF; tetratricopeptide 97.5 0.0037 1.3E-07 47.6 13.9 96 135-241 7-105 (129)
176 2uy1_A Cleavage stimulation fa 97.5 0.088 3E-06 50.7 27.9 206 194-435 195-413 (493)
177 1wao_1 Serine/threonine protei 97.4 0.00048 1.6E-08 66.5 10.0 118 138-271 14-134 (477)
178 1hxi_A PEX5, peroxisome target 97.4 0.0013 4.4E-08 50.1 10.4 91 218-310 23-113 (121)
179 1wao_1 Serine/threonine protei 97.4 0.00048 1.6E-08 66.5 9.3 119 186-306 14-134 (477)
180 3k9i_A BH0479 protein; putativ 97.4 0.00048 1.6E-08 52.1 7.5 87 143-240 3-89 (117)
181 3n71_A Histone lysine methyltr 97.4 0.0013 4.4E-08 63.4 12.1 131 139-275 318-463 (490)
182 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.0022 7.5E-08 61.4 13.6 132 177-310 267-414 (457)
183 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.0035 1.2E-07 60.1 14.8 144 130-275 268-414 (457)
184 3n71_A Histone lysine methyltr 97.3 0.0014 4.7E-08 63.1 11.7 125 186-310 317-463 (490)
185 1ihg_A Cyclophilin 40; ppiase 97.3 0.0039 1.3E-07 57.8 14.2 123 179-303 224-362 (370)
186 3rkv_A Putative peptidylprolyl 97.3 0.0047 1.6E-07 49.4 13.0 110 130-240 11-125 (162)
187 1ihg_A Cyclophilin 40; ppiase 97.2 0.0065 2.2E-07 56.3 13.9 135 131-268 224-362 (370)
188 3rkv_A Putative peptidylprolyl 97.2 0.0066 2.3E-07 48.6 12.3 98 178-276 11-126 (162)
189 2hr2_A Hypothetical protein; a 97.1 0.011 3.6E-07 47.1 12.0 100 217-318 16-143 (159)
190 2l6j_A TPR repeat-containing p 97.0 0.00089 3E-08 49.6 5.5 63 129-205 3-65 (111)
191 1dce_A Protein (RAB geranylger 97.0 0.064 2.2E-06 52.7 19.8 173 143-332 42-241 (567)
192 3dss_A Geranylgeranyl transfer 97.0 0.19 6.6E-06 45.3 22.1 235 190-436 41-305 (331)
193 3mkq_A Coatomer beta'-subunit; 96.9 0.024 8.3E-07 58.3 16.4 102 186-310 607-709 (814)
194 2if4_A ATFKBP42; FKBP-like, al 96.8 0.0053 1.8E-07 56.2 9.7 116 177-311 178-293 (338)
195 3dss_A Geranylgeranyl transfer 96.8 0.28 9.6E-06 44.3 25.2 215 130-368 26-271 (331)
196 2if4_A ATFKBP42; FKBP-like, al 96.8 0.0089 3.1E-07 54.6 11.2 148 130-311 179-328 (338)
197 2kat_A Uncharacterized protein 96.7 0.013 4.4E-07 43.6 9.9 62 178-239 19-80 (115)
198 1na3_A Designed protein CTPR2; 96.7 0.021 7.2E-07 40.0 10.5 59 132-204 11-69 (91)
199 1klx_A Cysteine rich protein B 96.7 0.062 2.1E-06 41.6 14.0 113 191-313 8-128 (138)
200 2l6j_A TPR repeat-containing p 96.7 0.0058 2E-07 44.9 7.6 61 214-275 6-66 (111)
201 1klx_A Cysteine rich protein B 96.6 0.048 1.6E-06 42.3 12.9 112 144-278 9-128 (138)
202 2hr2_A Hypothetical protein; a 96.6 0.035 1.2E-06 44.1 11.9 72 131-204 12-83 (159)
203 2kat_A Uncharacterized protein 96.6 0.011 3.9E-07 43.9 8.9 78 197-275 4-81 (115)
204 1dce_A Protein (RAB geranylger 96.6 0.15 5.2E-06 50.0 18.7 188 191-385 42-243 (567)
205 3mkq_A Coatomer beta'-subunit; 96.5 0.2 6.9E-06 51.3 20.2 45 189-238 663-707 (814)
206 1na3_A Designed protein CTPR2; 96.5 0.029 9.9E-07 39.2 9.8 62 214-276 11-72 (91)
207 3ma5_A Tetratricopeptide repea 96.4 0.019 6.5E-07 41.6 8.4 61 248-309 8-68 (100)
208 1wy6_A Hypothetical protein ST 96.3 0.26 8.7E-06 37.5 16.6 139 142-314 19-157 (172)
209 1wy6_A Hypothetical protein ST 96.1 0.31 1E-05 37.1 14.1 134 260-403 20-157 (172)
210 3mkq_B Coatomer subunit alpha; 96.1 0.29 9.9E-06 39.4 14.4 130 137-308 12-141 (177)
211 3ma5_A Tetratricopeptide repea 96.0 0.037 1.3E-06 40.0 8.5 61 178-238 7-67 (100)
212 1zu2_A Mitochondrial import re 95.9 0.02 6.7E-07 45.5 6.9 99 141-255 13-132 (158)
213 3qwp_A SET and MYND domain-con 95.9 0.039 1.3E-06 52.1 10.0 93 218-310 293-399 (429)
214 3qww_A SET and MYND domain-con 95.8 0.058 2E-06 50.9 10.8 87 224-310 310-410 (433)
215 3qww_A SET and MYND domain-con 95.7 0.04 1.4E-06 52.0 9.3 93 142-240 310-410 (433)
216 3qwp_A SET and MYND domain-con 95.7 0.069 2.4E-06 50.4 10.8 100 135-240 292-399 (429)
217 3ly7_A Transcriptional activat 95.2 0.29 9.8E-06 44.6 12.5 132 128-275 192-338 (372)
218 1zu2_A Mitochondrial import re 95.1 0.052 1.8E-06 43.0 6.7 98 189-290 13-132 (158)
219 3mkq_B Coatomer subunit alpha; 94.9 1.2 4.2E-05 35.7 17.8 103 186-308 13-115 (177)
220 3ly7_A Transcriptional activat 94.5 1.6 5.6E-05 39.7 15.6 139 177-319 193-345 (372)
221 2kc7_A BFR218_protein; tetratr 94.4 0.2 6.7E-06 35.6 8.0 53 188-240 10-63 (99)
222 2kc7_A BFR218_protein; tetratr 94.4 0.13 4.4E-06 36.6 7.0 81 137-239 7-88 (99)
223 1pc2_A Mitochondria fission pr 93.5 0.7 2.4E-05 36.1 9.9 82 228-311 14-100 (152)
224 2ff4_A Probable regulatory pro 93.1 1.3 4.4E-05 41.0 12.8 67 217-284 176-247 (388)
225 2v5f_A Prolyl 4-hydroxylase su 92.4 0.82 2.8E-05 33.0 8.5 24 285-308 49-72 (104)
226 2v5f_A Prolyl 4-hydroxylase su 92.1 1.1 3.9E-05 32.2 9.0 67 210-276 3-75 (104)
227 3bee_A Putative YFRE protein; 92.1 1.7 5.8E-05 30.7 9.7 65 246-311 5-72 (93)
228 3bee_A Putative YFRE protein; 91.7 2.5 8.6E-05 29.8 10.5 63 129-205 5-70 (93)
229 2ff4_A Probable regulatory pro 91.3 8.9 0.0003 35.3 16.9 80 336-416 174-255 (388)
230 4h7y_A Dual specificity protei 91.0 3.1 0.00011 32.3 10.4 102 177-279 12-126 (161)
231 1pc2_A Mitochondria fission pr 90.9 1.2 4E-05 34.8 8.2 82 194-276 14-100 (152)
232 4fhn_B Nucleoporin NUP120; pro 90.8 20 0.00067 38.4 22.7 224 184-419 818-1079(1139)
233 4h7y_A Dual specificity protei 89.3 4.5 0.00015 31.4 10.0 105 210-316 11-128 (161)
234 4fhn_B Nucleoporin NUP120; pro 87.2 34 0.0012 36.5 19.5 201 218-437 818-1052(1139)
235 1v54_E Cytochrome C oxidase po 87.1 2.4 8.3E-05 30.2 6.6 62 351-416 28-89 (109)
236 1v54_E Cytochrome C oxidase po 87.1 6.5 0.00022 28.1 9.6 63 227-290 25-87 (109)
237 3u64_A Protein TP_0956; tetrat 85.6 18 0.00061 31.7 19.3 108 210-319 152-279 (301)
238 4b4t_P 26S proteasome regulato 85.5 24 0.00082 33.1 22.4 196 105-310 29-246 (445)
239 3u64_A Protein TP_0956; tetrat 85.5 5.2 0.00018 35.0 9.5 109 130-251 154-281 (301)
240 1nzn_A CGI-135 protein, fissio 84.9 6.1 0.00021 29.6 8.4 81 230-311 19-103 (126)
241 2y69_E Cytochrome C oxidase su 84.8 11 0.00038 28.5 9.5 63 227-290 68-130 (152)
242 1nzn_A CGI-135 protein, fissio 84.7 6.8 0.00023 29.4 8.6 84 192-276 15-103 (126)
243 3eiq_C Programmed cell death p 84.5 10 0.00036 34.3 11.4 198 214-416 56-298 (358)
244 4gns_B Protein CSD3, chitin bi 81.9 8.3 0.00028 38.9 10.5 127 132-273 250-397 (754)
245 2y69_E Cytochrome C oxidase su 81.0 15 0.00053 27.8 9.0 50 262-311 68-117 (152)
246 4b4t_P 26S proteasome regulato 80.8 37 0.0013 31.8 23.5 190 144-360 30-245 (445)
247 4gns_B Protein CSD3, chitin bi 80.4 52 0.0018 33.2 15.8 129 180-309 250-398 (754)
248 1k1a_A B-cell lymphoma 3-encod 80.2 5.9 0.0002 33.1 8.0 85 184-272 12-101 (241)
249 2zu6_B Programmed cell death p 79.3 12 0.00042 33.0 9.7 75 334-410 167-241 (307)
250 4b4t_R RPN7, 26S proteasome re 75.8 8.7 0.0003 35.9 8.3 60 249-308 133-194 (429)
251 1wdy_A 2-5A-dependent ribonucl 74.7 6.9 0.00023 33.5 6.9 212 135-387 7-235 (285)
252 3lvg_A Clathrin heavy chain 1; 74.1 0.26 9E-06 46.4 -2.6 158 22-225 119-276 (624)
253 4b4t_R RPN7, 26S proteasome re 73.2 33 0.0011 31.9 11.6 96 179-276 132-237 (429)
254 3txn_A 26S proteasome regulato 70.6 65 0.0022 29.5 17.7 131 179-310 20-167 (394)
255 3t8k_A Uncharacterized protein 66.7 23 0.00078 28.4 7.9 129 187-317 12-149 (186)
256 3lpz_A GET4 (YOR164C homolog); 66.6 71 0.0024 28.5 18.8 146 131-309 36-194 (336)
257 3o48_A Mitochondria fission 1 66.5 39 0.0013 25.5 8.4 73 363-435 35-107 (134)
258 1ug3_A EIF4GI, eukaryotic prot 66.3 12 0.00041 33.6 6.6 26 180-205 13-38 (339)
259 3eu9_A Huntingtin-interacting 66.0 11 0.00036 31.3 6.0 117 185-316 13-136 (240)
260 1k1a_A B-cell lymphoma 3-encod 65.6 21 0.00071 29.6 7.8 159 137-316 13-177 (241)
261 1wdy_A 2-5A-dependent ribonucl 63.1 17 0.00059 30.9 7.0 120 182-316 6-132 (285)
262 2rfa_A Transient receptor pote 62.4 29 0.00099 28.5 8.1 181 184-389 6-215 (232)
263 3aji_A 26S proteasome non-ATPa 61.5 18 0.00061 29.8 6.6 118 184-316 9-133 (231)
264 1zbp_A Hypothetical protein VP 61.1 79 0.0027 27.1 10.4 53 257-310 7-59 (273)
265 1zbp_A Hypothetical protein VP 58.9 28 0.00095 29.9 7.0 53 341-394 5-57 (273)
266 2ion_A PDCD4, programmed cell 58.3 62 0.0021 25.0 8.8 62 182-243 13-76 (152)
267 2fe3_A Peroxide operon regulat 57.7 53 0.0018 25.1 8.1 64 306-386 11-74 (145)
268 3b7b_A Euchromatic histone-lys 57.2 8 0.00027 32.2 3.6 211 184-434 14-235 (237)
269 1y8m_A FIS1; mitochondria, unk 55.5 67 0.0023 24.5 10.5 74 363-436 34-107 (144)
270 2d2s_A Exocyst complex compone 53.5 99 0.0034 25.9 9.7 88 184-274 24-118 (235)
271 2nsz_A Programmed cell death p 53.0 69 0.0023 23.9 10.2 61 182-242 11-73 (129)
272 2uwj_G Type III export protein 52.9 59 0.002 23.1 7.7 80 192-278 20-99 (115)
273 2xig_A Ferric uptake regulatio 52.9 53 0.0018 25.2 7.4 51 336-386 29-79 (150)
274 1mzb_A Ferric uptake regulatio 52.8 52 0.0018 24.7 7.3 63 307-386 8-71 (136)
275 3hra_A Ankyrin repeat family p 52.1 27 0.00092 27.9 6.0 82 185-272 9-94 (201)
276 2p58_C Putative type III secre 51.9 62 0.0021 23.1 8.4 80 192-278 21-100 (116)
277 2uwj_G Type III export protein 50.5 65 0.0022 22.9 6.7 79 226-312 20-98 (115)
278 2p58_C Putative type III secre 49.0 69 0.0024 22.8 7.7 79 226-312 21-99 (116)
279 2fu4_A Ferric uptake regulatio 48.6 57 0.002 21.7 7.1 33 351-383 35-67 (83)
280 2w57_A Ferric uptake regulatio 47.9 63 0.0022 24.8 7.1 64 306-386 6-70 (150)
281 3eyy_A Putative iron uptake re 47.6 56 0.0019 24.9 6.7 63 306-386 8-70 (145)
282 3lvg_A Clathrin heavy chain 1; 45.8 0.47 1.6E-05 44.7 -6.3 97 325-433 75-171 (624)
283 2fu4_A Ferric uptake regulatio 45.5 65 0.0022 21.4 6.5 57 273-330 8-65 (83)
284 3aji_A 26S proteasome non-ATPa 45.1 26 0.00089 28.8 4.9 88 218-315 9-99 (231)
285 3twr_A Tankyrase-2; ankyrin re 44.4 31 0.0011 26.4 5.0 121 183-316 10-135 (165)
286 3eu9_A Huntingtin-interacting 43.9 29 0.001 28.4 5.1 85 219-316 13-103 (240)
287 3twr_A Tankyrase-2; ankyrin re 43.8 38 0.0013 25.9 5.4 90 218-316 11-102 (165)
288 2ion_A PDCD4, programmed cell 42.7 1.1E+02 0.0039 23.5 10.8 65 250-315 12-78 (152)
289 2d2s_A Exocyst complex compone 41.4 1.6E+02 0.0053 24.7 9.4 89 218-309 24-118 (235)
290 4g8k_A 2-5A-dependent ribonucl 41.3 64 0.0022 28.3 7.2 17 187-203 174-190 (337)
291 4ets_A Ferric uptake regulatio 40.9 90 0.0031 24.3 7.1 72 299-387 14-88 (162)
292 3ffl_A Anaphase-promoting comp 40.9 1.3E+02 0.0045 23.6 9.1 123 177-312 19-152 (167)
293 3bu8_A Telomeric repeat-bindin 40.6 1.5E+02 0.0052 24.4 9.0 23 289-311 121-143 (235)
294 2wpv_A GET4, UPF0363 protein Y 40.1 1.9E+02 0.0066 25.4 17.5 147 131-309 34-195 (312)
295 3jxi_A Vanilloid receptor-rela 38.7 16 0.00055 30.8 2.6 117 184-305 8-160 (260)
296 1ug3_A EIF4GI, eukaryotic prot 38.3 1.3E+02 0.0044 26.8 8.5 24 283-306 142-165 (339)
297 3esl_A Checkpoint serine/threo 37.9 1.6E+02 0.0056 23.9 12.3 56 260-315 92-148 (202)
298 3o48_A Mitochondria fission 1 37.8 1.3E+02 0.0044 22.7 10.0 67 245-311 38-107 (134)
299 4a1g_A Mitotic checkpoint seri 37.4 92 0.0032 24.1 6.3 51 301-366 84-134 (152)
300 2wvi_A Mitotic checkpoint seri 37.2 65 0.0022 25.3 5.5 56 299-369 77-132 (164)
301 3ffl_A Anaphase-promoting comp 36.6 1.5E+02 0.0053 23.2 9.6 98 336-433 23-149 (167)
302 3q5w_A Protein CUT8; proteasom 35.7 2E+02 0.0067 24.2 10.3 148 170-346 56-203 (245)
303 3f6q_A Integrin-linked protein 34.7 67 0.0023 24.9 5.6 117 186-316 10-132 (179)
304 2r9g_A AAA ATPase, central reg 34.7 1.8E+02 0.0063 23.6 9.7 64 218-282 17-88 (204)
305 3eiq_C Programmed cell death p 34.6 2.3E+02 0.0078 25.5 9.5 94 214-308 219-318 (358)
306 3bu8_A Telomeric repeat-bindin 34.4 1.9E+02 0.0067 23.8 8.2 47 194-240 88-142 (235)
307 3eyy_A Putative iron uptake re 34.0 83 0.0029 23.9 5.7 33 264-296 34-66 (145)
308 2yru_A Steroid receptor RNA ac 33.8 59 0.002 23.9 4.5 41 234-274 48-88 (118)
309 2nsz_A Programmed cell death p 33.6 1.5E+02 0.005 22.0 12.1 65 250-315 10-76 (129)
310 3v31_A Ankyrin repeat family A 33.4 1.5E+02 0.0053 22.3 7.9 118 185-316 7-129 (167)
311 3t8k_A Uncharacterized protein 33.1 55 0.0019 26.0 4.8 161 139-315 12-184 (186)
312 2xig_A Ferric uptake regulatio 32.7 1.6E+02 0.0056 22.4 7.6 59 271-330 16-74 (150)
313 2dzn_A Probable 26S proteasome 32.6 28 0.00094 28.5 3.0 120 184-316 5-134 (228)
314 1mzb_A Ferric uptake regulatio 32.5 1.1E+02 0.0037 22.9 6.1 35 262-296 33-67 (136)
315 3v30_A DNA-binding protein rfx 32.1 57 0.0019 25.1 4.7 11 379-389 143-153 (172)
316 3bge_A Predicted ATPase; struc 31.8 2E+02 0.007 23.2 8.4 61 218-278 10-78 (201)
317 2rfa_A Transient receptor pote 31.4 1.7E+02 0.0059 23.5 7.9 155 137-315 7-184 (232)
318 4fke_A Aminopeptidase N; zinc 30.5 4.7E+02 0.016 27.0 16.6 161 134-309 690-858 (909)
319 2fe3_A Peroxide operon regulat 30.4 1.8E+02 0.006 22.0 7.4 59 272-331 12-70 (145)
320 3f6q_A Integrin-linked protein 30.1 1.2E+02 0.004 23.4 6.4 88 220-316 10-99 (179)
321 3ltm_A Alpha-REP4; protein eng 30.0 2.1E+02 0.0071 22.7 19.2 122 177-310 63-184 (211)
322 3hra_A Ankyrin repeat family p 29.3 91 0.0031 24.5 5.7 95 186-281 77-172 (201)
323 2o03_A Probable zinc uptake re 29.3 96 0.0033 23.0 5.3 49 338-386 15-63 (131)
324 3kea_A K1L; tropism, ANK repea 29.2 55 0.0019 28.1 4.5 168 231-431 12-183 (285)
325 3ltj_A Alpharep-4; protein eng 29.1 2.1E+02 0.0071 22.5 19.6 184 166-384 16-199 (201)
326 2ijq_A Hypothetical protein; s 29.0 2E+02 0.007 22.3 8.3 53 258-310 43-103 (161)
327 3mwm_A ZUR, putative metal upt 28.5 90 0.0031 23.5 5.0 50 337-386 17-66 (139)
328 4aez_C MAD3, mitotic spindle c 28.3 92 0.0031 25.8 5.3 54 299-367 131-184 (223)
329 2w57_A Ferric uptake regulatio 28.0 1.2E+02 0.004 23.2 5.7 36 262-297 32-67 (150)
330 3ctd_A Putative ATPase, AAA fa 27.0 2.6E+02 0.0089 22.9 9.1 66 217-282 37-110 (213)
331 2f8y_A Notch homolog 1, transl 26.9 2E+02 0.007 22.8 7.6 123 184-316 28-152 (223)
332 1bd8_A P19INK4D CDK4/6 inhibit 26.2 80 0.0027 23.6 4.5 112 184-307 5-123 (156)
333 2zu6_B Programmed cell death p 26.0 3E+02 0.01 24.1 8.5 24 216-239 170-193 (307)
334 3l6a_A Eukaryotic translation 26.0 3.6E+02 0.012 24.2 15.3 62 180-244 14-80 (364)
335 3ljn_A Hypothetical protein; a 25.1 2.4E+02 0.0081 24.8 8.2 100 177-282 17-116 (364)
336 4gq2_M Nucleoporin NUP120; bet 24.9 5.8E+02 0.02 26.4 11.9 48 249-296 899-950 (950)
337 2b7e_A PRE-mRNA processing pro 24.9 51 0.0018 20.7 2.4 29 229-257 3-31 (59)
338 2yru_A Steroid receptor RNA ac 24.8 2.1E+02 0.007 21.0 8.0 44 268-311 47-90 (118)
339 3f3f_C Nucleoporin NUP85; stru 24.6 2.5E+02 0.0086 27.0 8.2 54 177-231 515-568 (570)
340 1y8m_A FIS1; mitochondria, unk 24.5 2.3E+02 0.008 21.5 11.3 67 245-311 37-106 (144)
341 1wty_A Hypothetical protein TT 24.5 2E+02 0.0069 20.8 6.2 67 228-300 4-71 (119)
342 4ets_A Ferric uptake regulatio 23.9 1.4E+02 0.0049 23.1 5.5 43 254-296 39-83 (162)
343 1us7_B HSP90 CO-chaperone CDC3 23.7 3.4E+02 0.012 23.1 8.9 57 130-202 39-98 (265)
344 1wgl_A TOLL-interacting protei 23.0 1.1E+02 0.0039 19.1 3.8 18 261-278 37-54 (59)
345 2qx5_A Nucleoporin NIC96; mRNA 22.2 5.7E+02 0.02 25.2 12.2 223 184-432 300-564 (661)
346 3jxi_A Vanilloid receptor-rela 22.1 66 0.0022 26.9 3.5 25 257-281 12-36 (260)
347 3kae_A CDC27, possible protein 21.9 1.1E+02 0.0039 24.2 4.3 178 249-436 34-238 (242)
348 2o03_A Probable zinc uptake re 21.6 1.1E+02 0.0038 22.6 4.3 38 259-296 22-59 (131)
349 4aez_C MAD3, mitotic spindle c 21.2 3.5E+02 0.012 22.3 8.2 52 264-315 131-183 (223)
350 3esl_A Checkpoint serine/threo 21.2 3.3E+02 0.011 22.1 11.6 59 295-368 92-150 (202)
351 3txn_A 26S proteasome regulato 21.1 4.7E+02 0.016 23.8 22.2 173 134-318 103-290 (394)
352 2rg8_A Programmed cell death p 21.0 2.8E+02 0.0095 21.6 6.7 24 216-239 14-37 (165)
353 2wvi_A Mitotic checkpoint seri 20.9 3E+02 0.01 21.4 9.9 52 265-316 78-130 (164)
354 3dd4_A KV channel-interacting 20.9 3.4E+02 0.012 22.0 11.9 128 129-270 83-225 (229)
355 1qsa_A Protein (soluble lytic 20.6 6E+02 0.02 24.8 22.0 228 193-434 54-313 (618)
356 3mwm_A ZUR, putative metal upt 20.6 1E+02 0.0034 23.2 3.9 44 254-297 20-63 (139)
357 3c1d_A Protein ORAA, regulator 20.4 3E+02 0.01 21.2 10.3 51 263-315 46-96 (159)
358 3qil_A Clathrin heavy chain 1; 20.3 53 0.0018 24.2 2.1 54 132-201 34-87 (125)
359 3bqo_A Telomeric repeat-bindin 20.3 1.5E+02 0.0052 24.0 4.9 45 194-238 94-143 (211)
360 4ady_A RPN2, 26S proteasome re 20.3 7.4E+02 0.025 25.7 21.0 210 188-420 500-720 (963)
361 1wty_A Hypothetical protein TT 20.2 2.5E+02 0.0086 20.3 7.1 75 349-433 4-79 (119)
362 2jul_A Calsenilin; EF-hand, ca 20.2 3.7E+02 0.013 22.2 11.4 147 147-309 91-256 (256)
363 3utm_A Tankyrase-1; tankyrase, 20.1 1.1E+02 0.0036 26.7 4.7 119 183-316 26-151 (351)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.5e-33 Score=274.40 Aligned_cols=196 Identities=14% Similarity=0.141 Sum_probs=175.5
Q ss_pred hcCCCCCCHH-HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCC-------
Q 036107 122 TQTGYMHTPE-TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNS------- 193 (441)
Q Consensus 122 ~~~g~~p~~~-~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------- 193 (441)
.+.+..+.+. .++.+|.+|++.|++++|+++|++|.+.| . .||..+|++||.+|++.+.
T Consensus 17 ~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v------------~pd~~tyn~Li~~c~~~~~~~~~~~~ 83 (501)
T 4g26_A 17 KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG-V------------QLSQYHYNVLLYVCSLAEAATESSPN 83 (501)
T ss_dssp -------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-C------------CCCHHHHHHHHHHHTTCCCCSSSSCC
T ss_pred HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C------------CCCHhHHHHHHHHHHhCCchhhhhhc
Confidence 3445555543 57888999999999999999999998877 3 3488999999999887654
Q ss_pred --HHHHHHHHHHh-hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036107 194 --VAHAYKVFLKF-KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270 (441)
Q Consensus 194 --~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~ 270 (441)
+++|.++|++| ..++.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||++|.+|++.|++++|.++|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 78999999999 559999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 036107 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330 (441)
Q Consensus 271 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (441)
++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999988764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6.2e-34 Score=277.09 Aligned_cols=205 Identities=14% Similarity=0.103 Sum_probs=169.4
Q ss_pred HHHHHHHHhhh-CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC---------HH
Q 036107 196 HAYKVFLKFKD-CISL-SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD---------FR 264 (441)
Q Consensus 196 ~a~~~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~ 264 (441)
.+..+...+++ +... ...+++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34445555533 3333 2346888899999999999999999999999999999999999999987654 68
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHH
Q 036107 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC 344 (441)
Q Consensus 265 ~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~ 344 (441)
+|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..| ||++|.+|+
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t----------------yn~lI~~~~ 151 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS----------------YGPALFGFC 151 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH----------------HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce----------------ehHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999877 888888888
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036107 345 VRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKK 419 (441)
Q Consensus 345 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 419 (441)
+.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+ ++++|.+.|..|+..||+.++..|+..
T Consensus 152 ~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~---ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 152 RKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYK---TLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH---HHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHH---HHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888889999999999999999999999999999999999999855 788888889999999999999988753
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-31 Score=267.31 Aligned_cols=404 Identities=8% Similarity=-0.065 Sum_probs=319.8
Q ss_pred ccCCCcchhhcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHH
Q 036107 20 HKINPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILR 99 (441)
Q Consensus 20 ~~~n~~i~~l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 99 (441)
..++..+..+.+.|++. +|.+++..+. ...|+..++..+..++.+.|+++.|..++..+... .++. .+...++
T Consensus 85 ~~~~~~~~~~~~~g~~~-~A~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~~~l~ 157 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYK-CAAFVGEKVL---DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSS-ACRYLAA 157 (597)
T ss_dssp HHHHHHHHHHHHTTCHH-HHHHHHHHHH---HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCH-HHHHHHH
T ss_pred HHHHHHHHHHHHccCch-HHHHHHHHHH---hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccch-hHHHHHH
Confidence 34566777788888888 8888887444 23466678888999999999999999999987654 3444 6888899
Q ss_pred hcCCChHHHHHHHhhhhhHhhhh------------cCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHH
Q 036107 100 KRYPSPDKVVEALKCFCFTWAKT------------QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLA 167 (441)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~~~~~~------------~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ 167 (441)
.+|.+.|++++|+++|+...... ..+..++..+|+.++.+|.+.|++++|.++|++|.+.++..+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 99999999999999996211110 123344688999999999999999999999999998764433221
Q ss_pred HHHHH----------------------------------------------------Hh-----hcCHHHHHHHHHHHHh
Q 036107 168 AMSTV----------------------------------------------------MR-----RLDTRAMSVLMDTLVK 190 (441)
Q Consensus 168 ~~~~~----------------------------------------------------~~-----~~~~~~~~~li~~~~~ 190 (441)
..... +. ..+..++..++..|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 11100 00 1477888888888888
Q ss_pred cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036107 191 RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270 (441)
Q Consensus 191 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~ 270 (441)
.|++++|.++|+++....+.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.+...|.+.|++++|.++|
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 8888888888888855445577778888888888888888888888887532 346788899999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc-----------------
Q 036107 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF----------------- 333 (441)
Q Consensus 271 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----------------- 333 (441)
+++.+... .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+++.+..+|.+.|+.
T Consensus 397 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 474 (597)
T 2xpi_A 397 SKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474 (597)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99877532 367889999999999999999999999988764 34677888899999998887
Q ss_pred -chHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCH
Q 036107 334 -LIYNTMISSACVRSEEGNALKLRQKIEED----SCKPD--CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQE 406 (441)
Q Consensus 334 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~ 406 (441)
.+|+.++..|.+.|++++|+++|+++.+. +..|+ ..+|..+..+|.+.|++++|.+ .++++.+.+ +.+.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~-p~~~ 550 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID---ALNQGLLLS-TNDA 550 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH---HHHHHHHHS-SCCH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH---HHHHHHHhC-CCCh
Confidence 67889999999999999999999998765 77888 6789999999999999999977 455544433 3478
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107 407 STHKMLAEELEKKSLGNAKERIDELLTHATE 437 (441)
Q Consensus 407 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 437 (441)
.+|..+..+|.+.|++++|.+.++.+.+...
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999998876654
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.8e-27 Score=239.14 Aligned_cols=371 Identities=9% Similarity=-0.049 Sum_probs=276.9
Q ss_pred CCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHH
Q 036107 54 PDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETY 133 (441)
Q Consensus 54 p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y 133 (441)
++...+..++..+.+.|+++.|..++..+.+ ..|+. ..+..+...|.+.|++++|+++|+.+. ...++..+|
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ 153 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNP-NDAFWLAQVYCCTGDYARAKCLLTKED-----LYNRSSACR 153 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTC-----GGGTCHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHh-----ccccchhHH
Confidence 4666788999999999999999999999985 44554 456678899999999999999996332 235789999
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHH--HHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---
Q 036107 134 NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMST--VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI--- 208 (441)
Q Consensus 134 ~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--- 208 (441)
+.++.+|.+.|++++|.++|+++............... .-...+..+|+.++.+|.+.|++++|.++|+++....
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 233 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchh
Confidence 99999999999999999999953221100000000000 0001157888999999999999999999888772211
Q ss_pred --------------------------------------------------------------------CCcHHHHHHHHH
Q 036107 209 --------------------------------------------------------------------SLSSQIFDVLIH 220 (441)
Q Consensus 209 --------------------------------------------------------------------~~~~~~~~~li~ 220 (441)
+++..+|+.++.
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 313 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 256666777777
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 036107 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300 (441)
Q Consensus 221 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 300 (441)
+|.+.|++++|.++|+++.+.+ +.+..+|+.++.++.+.|++++|..+++++.+.. +.+..+|+.+..+|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 7777777777777777777543 2356677777777777777777777777776543 3467888888888999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc------------------chHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036107 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------------LIYNTMISSACVRSEEGNALKLRQKIEED 362 (441)
Q Consensus 301 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 362 (441)
|.++|+++.+.. +.+..+|+.++.+|.+.|+. .+|+.++..|.+.|++++|+++|++|.+.
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999998887743 33577888888888888887 67888888999999999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH-CCCCCC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS-KGIVPQ--ESTHKMLAEELEKKSLGNAKERIDELLTHAT 436 (441)
Q Consensus 363 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~-~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 436 (441)
. ..+..+|..+...|.+.|++++|.++++...+... .+..|+ ..+|..+..+|.+.|++++|.++++.+.+..
T Consensus 471 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 471 F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3 34678888999999999999998774443332221 277787 7789999999999999999999998876653
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.89 E-value=5.3e-20 Score=174.55 Aligned_cols=359 Identities=10% Similarity=-0.005 Sum_probs=275.2
Q ss_pred hcccchhcccccCccchhccCCCCCCCCcccccc-hhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHH
Q 036107 29 LCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPS-LASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDK 107 (441)
Q Consensus 29 l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~-l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 107 (441)
+-+.|++. +|.+.+...... .|+....... -..+...++++.+...+....+.. |+...++..+...|.+.|+
T Consensus 9 ~~~~g~~~-~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 9 EYQAGDFE-AAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHTCHH-HHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHCCCHH-HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCC
Confidence 45677777 777766632222 3444333333 344456677888888887776654 2223577778888888999
Q ss_pred HHHHHhhhhhHhhhhcCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHH
Q 036107 108 VVEALKCFCFTWAKTQTGYMH-TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMD 186 (441)
Q Consensus 108 ~~~A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 186 (441)
+++|++.|+..... .| +..+|..+..++.+.|++++|.+.|+++.+..+. +...+..+-.
T Consensus 83 ~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~l~~ 143 (388)
T 1w3b_A 83 LQEAIEHYRHALRL-----KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD--------------LYCVRSDLGN 143 (388)
T ss_dssp HHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT--------------CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------cHHHHHHHHH
Confidence 99999988644332 24 4567889999999999999999999988876532 4567777888
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 036107 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266 (441)
Q Consensus 187 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 266 (441)
.+...|++++|.+.|+++....+.+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 88888999999999988855445567888899999999999999999999988743 22456788888889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhc
Q 036107 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR 346 (441)
Q Consensus 267 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~ 346 (441)
...|++..+... -+..++..+..++.+.|++++|.+.|+++.+.+ |+.. .+|..+...+.+.
T Consensus 223 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~---------------~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 223 VAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFP---------------DAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCH---------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCH---------------HHHHHHHHHHHHc
Confidence 999988877532 257888889999999999999999999988753 3211 2388888899999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHH
Q 036107 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKE 426 (441)
Q Consensus 347 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 426 (441)
|++++|++.|+++.+.. ..+..++..+...+.+.|++++|.+ .++++.+. .+.+..++..+...+.+.|++++|.
T Consensus 285 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~---~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVR---LYRKALEV-FPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH---HHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHH---HHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998763 5577899999999999999999976 56665432 2345779999999999999999999
Q ss_pred HHHHHHHHHh
Q 036107 427 RIDELLTHAT 436 (441)
Q Consensus 427 ~~~~~m~~~~ 436 (441)
+.++.+.+..
T Consensus 360 ~~~~~a~~~~ 369 (388)
T 1w3b_A 360 MHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhhC
Confidence 9999887543
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.86 E-value=1.3e-18 Score=165.05 Aligned_cols=342 Identities=13% Similarity=-0.003 Sum_probs=272.3
Q ss_pred hcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHH
Q 036107 29 LCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKV 108 (441)
Q Consensus 29 l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 108 (441)
+.+.|++. +|...+....... ..+...+..+-..+.+.|+++.|...+..+.+.. |+....+..+...+.+.|++
T Consensus 43 ~~~~~~~~-~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~ 117 (388)
T 1w3b_A 43 HFQCRRLD-RSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDM 117 (388)
T ss_dssp HHHTTCHH-HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCS
T ss_pred HHHcCCHH-HHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCH
Confidence 45667776 7766665222221 1245678888888899999999999999988754 33335677788889999999
Q ss_pred HHHHhhhhhHhhhhcCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHH
Q 036107 109 VEALKCFCFTWAKTQTGYMHT-PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDT 187 (441)
Q Consensus 109 ~~A~~~~~~~~~~~~~g~~p~-~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 187 (441)
++|++.|+..... .|+ ...+..+-..+...|++++|.+.|+++.+..+. +..+|..+...
T Consensus 118 ~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~l~~~ 178 (388)
T 1w3b_A 118 EGAVQAYVSALQY-----NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN--------------FAVAWSNLGCV 178 (388)
T ss_dssp SHHHHHHHHHHHH-----CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHH
Confidence 9999999644432 344 557788888899999999999999999886522 67899999999
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHH
Q 036107 188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKV 266 (441)
Q Consensus 188 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a 266 (441)
+.+.|++++|.+.|+++....+.+...|..+...+...|++++|...|++.... .| +..++..+...+.+.|++++|
T Consensus 179 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 256 (388)
T 1w3b_A 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLA 256 (388)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999985544567788999999999999999999999998874 34 578899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhc
Q 036107 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR 346 (441)
Q Consensus 267 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~ 346 (441)
.+.|+++.+.+. .+..+|..+..++.+.|++++|.+.|+++.+.. +.+..+ |+.+...+...
T Consensus 257 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~----------------~~~l~~~~~~~ 318 (388)
T 1w3b_A 257 IDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADS----------------LNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHH----------------HHHHHHHHHTT
T ss_pred HHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHH----------------HHHHHHHHHHc
Confidence 999999988642 357889999999999999999999999998753 334433 88888899999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 036107 347 SEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEELEKKS 420 (441)
Q Consensus 347 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g 420 (441)
|++++|++.++++.+.. ..+..++..+...+.+.|++++|.+ .++++.+ +.|+ ...|..+-..+.+.|
T Consensus 319 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~---~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALM---HYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHH---HHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHH---HHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 99999999999998642 3356789999999999999999977 5566543 3453 456666666665544
No 7
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=4.7e-21 Score=192.20 Aligned_cols=151 Identities=13% Similarity=0.237 Sum_probs=127.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhh----hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFK----DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 252 (441)
-..||++||++||+.|++++|.++|+.|+ .++.||..|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35789999999999999999999998873 47999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC------HHHHHHHHH
Q 036107 253 FIEHYCREKD-FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD------TSFYSSLIF 325 (441)
Q Consensus 253 li~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~------~~~~~~li~ 325 (441)
||+++++.|+ .++|.++|++|.+.|+.||..||++++.++.+.+-+ +..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL----~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL----KAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHH----HHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHH----HHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999998 578999999999999999999999999877665333 333333 3455544 445555666
Q ss_pred HHHhcCc
Q 036107 326 ILSKAVR 332 (441)
Q Consensus 326 ~~~~~g~ 332 (441)
.|.+.+.
T Consensus 281 l~s~d~~ 287 (1134)
T 3spa_A 281 VYAKDGR 287 (1134)
T ss_dssp HHCCCSC
T ss_pred HHccCCC
Confidence 6666553
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.83 E-value=1.1e-17 Score=161.66 Aligned_cols=313 Identities=12% Similarity=-0.014 Sum_probs=248.7
Q ss_pred HHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHH
Q 036107 93 KVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172 (441)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~ 172 (441)
..+..+...+.+.|++++|+..|+..... ...+..+|..+..++...|++++|.+.|+++.+..+.
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------- 92 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD---------- 92 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----------
Confidence 56666777888899999999999754432 2236889999999999999999999999999986532
Q ss_pred HhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcH---HHHHHHHHH------------HHhcCCHHHHHHHHHH
Q 036107 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS---QIFDVLIHG------------WCKTRKSDYAQKAMKE 237 (441)
Q Consensus 173 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~li~~------------~~~~~~~~~a~~~~~~ 237 (441)
+..++..+...+.+.|++++|.+.|+.+....+.+. ..+..++.. +.+.|++++|.+.|++
T Consensus 93 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 93 ----FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 678899999999999999999999999865444455 666666444 8899999999999999
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 036107 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDT 317 (441)
Q Consensus 238 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 317 (441)
+.+.. +.+..++..+...|.+.|++++|.+.|+++.+.. +.+..+|..+...|...|++++|...|+++.+. .|+.
T Consensus 169 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~ 244 (450)
T 2y4t_A 169 ILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDH 244 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCh
Confidence 98743 3467889999999999999999999999998763 346889999999999999999999999999864 3433
Q ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChhhHHHHHH
Q 036107 318 SFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD-----CETHARSLKMCCHKKRMKDGMLVLN 392 (441)
Q Consensus 318 ~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~ 392 (441)
......+.... ....+..+...+...|++++|++.|+++.+. .|+ ...+..+...+.+.|++++|...
T Consensus 245 ~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-- 317 (450)
T 2y4t_A 245 KRCFAHYKQVK---KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV-- 317 (450)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH--
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHH--
Confidence 32211111111 1122445588899999999999999999874 455 45788889999999999999774
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107 393 LMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436 (441)
Q Consensus 393 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 436 (441)
+.++.+. .+.+...|..+..+|...|++++|.+.++...+..
T Consensus 318 -~~~a~~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 318 -CSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp -HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred -HHHHHHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4444332 23367899999999999999999999999886543
No 9
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=9.9e-21 Score=189.93 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=114.1
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 036107 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ---HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283 (441)
Q Consensus 207 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 283 (441)
....-..|||+||++||+.|++++|.++|++|.+ .|+.||++|||+||++|++.|++++|.++|++|.+.|+.||.+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 4455667999999999999999999999988764 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 036107 284 TCTIVMHALEKAKQI-YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331 (441)
Q Consensus 284 ~~~~ll~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 331 (441)
|||+||+++++.|+. ++|.++|++|.+.|+.||..+|++++.+..+.+
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 999999999999984 789999999999999999999997666555553
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.79 E-value=1.4e-16 Score=153.90 Aligned_cols=332 Identities=9% Similarity=-0.000 Sum_probs=248.6
Q ss_pred CCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHH
Q 036107 55 DEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYN 134 (441)
Q Consensus 55 ~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~ 134 (441)
+...+..+...+.+.|+++.|..++..+.+.... + ..++..+...|.+.|+.++|+..|+...... ..+...|.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~ 98 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-N-YIAYYRRATVFLAMGKSKAALPDLTKVIQLK----MDFTAARL 98 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-c-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCcHHHHH
Confidence 4445666677788889999999999988875432 2 3567777888899999999999997544331 22578999
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhcCCCccH-HHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHH
Q 036107 135 AMVEALGKSKKFGLMWELVKEIDELSNGYVSL-AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ 213 (441)
Q Consensus 135 ~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 213 (441)
.+..+|.+.|++++|.+.|+++.+..+..+.. .....+........+..+...+.+.|++++|...|+.+....+.+..
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 178 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE 178 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 99999999999999999999998854221100 11111111111122334455688999999999999998665567888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----
Q 036107 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV----- 288 (441)
Q Consensus 214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l----- 288 (441)
.+..+..+|.+.|++++|.++|+++.+.. +.+..+|..+...+...|++++|...|+++.+... .+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHH
Confidence 99999999999999999999999998642 34688999999999999999999999999987532 244445444
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036107 289 -------MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEE 361 (441)
Q Consensus 289 -------l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 361 (441)
...|.+.|++++|...|+.+.+.. |+...+. . ..|..+...+.+.|++++|+..++++.+
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~--~---------~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYT--V---------RSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHH--H---------HHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHH--H---------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788999999999999999998743 3311100 0 2378888899999999999999999876
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 036107 362 DSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLA 413 (441)
Q Consensus 362 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll 413 (441)
.. ..+...|..+..+|...|++++|.+ .+++..+ +.|+ ...+..+-
T Consensus 324 ~~-p~~~~~~~~l~~~~~~~~~~~~A~~---~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 324 ME-PDNVNALKDRAEAYLIEEMYDEAIQ---DYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHH---HHHHHHT--TSSSCHHHHHHHH
T ss_pred hC-cccHHHHHHHHHHHHHhcCHHHHHH---HHHHHHH--hCcchHHHHHHHH
Confidence 52 3367889999999999999999977 4555443 4454 44454444
No 11
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=1.1e-15 Score=143.34 Aligned_cols=298 Identities=9% Similarity=-0.041 Sum_probs=222.0
Q ss_pred cCCChHHHHHHHh-hhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHH
Q 036107 101 RYPSPDKVVEALK-CFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTR 179 (441)
Q Consensus 101 ~~~~~g~~~~A~~-~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~ 179 (441)
.+...|+++.|++ .|+.........-..+...|..+...+.+.|++++|.+.|+++.+..+. +..
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~ 99 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK--------------HME 99 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--------------CHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------CHH
Confidence 3444577888887 6632111111111113456888889999999999999999999985522 678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHH-------
Q 036107 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC------- 252 (441)
Q Consensus 180 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~------- 252 (441)
++..+...+.+.|++++|.+.|++.....+.+..++..+...|...|++++|.+.|+++...... +...+..
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 178 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGG 178 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhh
Confidence 89999999999999999999999985545668889999999999999999999999999875422 2222221
Q ss_pred --------HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 036107 253 --------FIEHYCREKDFRKVDYTLKEMQEKGCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323 (441)
Q Consensus 253 --------li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (441)
.+..+...|++++|...|+++.+..... +..++..+...+.+.|++++|...|+++.+.. +.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~----- 252 (368)
T 1fch_A 179 AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL----- 252 (368)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-----
T ss_pred hcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH-----
Confidence 2444558999999999999998764322 58899999999999999999999999988753 12232
Q ss_pred HHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCC
Q 036107 324 IFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403 (441)
Q Consensus 324 i~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~ 403 (441)
.|..+...|...|++++|+..|++..+.. ..+...+..+...|.+.|++++|...++...++......
T Consensus 253 -----------~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 320 (368)
T 1fch_A 253 -----------LWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320 (368)
T ss_dssp -----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred -----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 38888889999999999999999988653 345678899999999999999998876655554433322
Q ss_pred C-------CHHHHHHHHHHHHhcCCccHHHHHHHH
Q 036107 404 P-------QESTHKMLAEELEKKSLGNAKERIDEL 431 (441)
Q Consensus 404 p-------~~~~~~~ll~~~~~~g~~~~a~~~~~~ 431 (441)
| ...+|..+..++.+.|++++|..++++
T Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred ccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 2 267999999999999999999998764
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.75 E-value=8.2e-16 Score=150.84 Aligned_cols=358 Identities=11% Similarity=-0.047 Sum_probs=266.0
Q ss_pred hhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcC
Q 036107 64 ASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKS 143 (441)
Q Consensus 64 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~ 143 (441)
..+.+.|+++.|...+..+.+.. |+. .++..+..+|.+.|++++|++.|+..... .+.+..+|..+..++.+.
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~--p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK--EDP-VFYSNLSACYVSVGDLKKVVEMSTKALEL----KPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--CCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHHhcC--ccH-HHHHhHHHHHHHHhhHHHHHHHHHHHhcc----ChHHHHHHHHHHHHHHHH
Confidence 45566788999999999888876 454 56777788899999999999999644332 123567899999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCccH----------------------------------------------------HHHHH
Q 036107 144 KKFGLMWELVKEIDELSNGYVSL----------------------------------------------------AAMST 171 (441)
Q Consensus 144 ~~~~~a~~l~~~m~~~~~~~~~~----------------------------------------------------~~~~~ 171 (441)
|++++|...|+++...++..... .....
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 99999999999987755311110 00000
Q ss_pred HHhhc-------------CHHHHHHHHHHHHh---cCCHHHHHHHHHHhhhC----C----------CCcHHHHHHHHHH
Q 036107 172 VMRRL-------------DTRAMSVLMDTLVK---RNSVAHAYKVFLKFKDC----I----------SLSSQIFDVLIHG 221 (441)
Q Consensus 172 ~~~~~-------------~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~----~----------~~~~~~~~~li~~ 221 (441)
.+... +...+......+.. .|++++|...|+++... . +.+..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 00000 13333333333343 79999999999887431 1 3345677888888
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036107 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301 (441)
Q Consensus 222 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 301 (441)
+...|++++|.+.|++..+.. |+...|..+...+...|++++|...+++..+... .+...+..+...+...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999988754 4478888888999999999999999999877643 3567888888999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc------------------chHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 036107 302 LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------------LIYNTMISSACVRSEEGNALKLRQKIEEDS 363 (441)
Q Consensus 302 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 363 (441)
...|++..+... .+...+..+...|.+.|+. ..|..+...|...|++++|+..++++.+..
T Consensus 324 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 324 GKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 999999887642 2456777777777777776 667888899999999999999999987532
Q ss_pred -CCCC----HHHHHHHHHHHHh---cCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107 364 -CKPD----CETHARSLKMCCH---KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA 435 (441)
Q Consensus 364 -~~p~----~~t~~~li~~~~~---~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 435 (441)
-.|+ ...+..+...+.. .|++++|.+.++...+ . .+.+...+..+...+.+.|++++|.+.++...+.
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~---~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK---L-DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH---H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH---h-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 1222 3478888899999 9999999775444333 2 2335678889999999999999999999987665
Q ss_pred h
Q 036107 436 T 436 (441)
Q Consensus 436 ~ 436 (441)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 4
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.7e-15 Score=147.11 Aligned_cols=318 Identities=10% Similarity=-0.032 Sum_probs=243.6
Q ss_pred HHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhh
Q 036107 96 EILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR 175 (441)
Q Consensus 96 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~ 175 (441)
..+...+.+.|++++|+..|...... .|+...|..+..++.+.|++++|.+.++++.+..+.
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------- 71 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALEL-----KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD------------- 71 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc-----CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-------------
Confidence 33446667789999999999755443 279999999999999999999999999999986532
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc--------------------------------------------
Q 036107 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS-------------------------------------------- 211 (441)
Q Consensus 176 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-------------------------------------------- 211 (441)
+..++..+..++.+.|++++|...|+.+....+++
T Consensus 72 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 150 (514)
T 2gw1_A 72 -YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE 150 (514)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred -HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH
Confidence 67899999999999999999999998873322211
Q ss_pred -----------------------------------HHHHHHHHHHHH---hcCCHHHHHHHHHHHhh-----CCC-----
Q 036107 212 -----------------------------------SQIFDVLIHGWC---KTRKSDYAQKAMKEMFQ-----HGF----- 243 (441)
Q Consensus 212 -----------------------------------~~~~~~li~~~~---~~~~~~~a~~~~~~m~~-----~g~----- 243 (441)
...+......+. +.|++++|..+|+++.+ ..-
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 230 (514)
T 2gw1_A 151 RKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE 230 (514)
T ss_dssp ------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred HHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccc
Confidence 222223333333 38999999999999987 311
Q ss_pred ---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 036107 244 ---SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320 (441)
Q Consensus 244 ---~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 320 (441)
+.+..++..+...+...|++++|...|+++.+.... ...+..+...+...|++++|...++.+.+.. +.+..++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 307 (514)
T 2gw1_A 231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVY 307 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHH
T ss_pred ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHH
Confidence 223567888889999999999999999999887543 8889999999999999999999999998764 3356677
Q ss_pred HHHHHHHHhcCcc------------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036107 321 SSLIFILSKAVRF------------------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKK 382 (441)
Q Consensus 321 ~~li~~~~~~g~~------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 382 (441)
..+...|.+.|+. ..|..+...|...|++++|+..++++.+.. ..+..++..+...+.+.|
T Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 386 (514)
T 2gw1_A 308 YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKN 386 (514)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCC
Confidence 8888888888877 567778888888999999999998887642 234567788888888999
Q ss_pred ChhhHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHh
Q 036107 383 RMKDGMLVLNLMREMLSKGI--VPQESTHKMLAEELEK---KSLGNAKERIDELLTHAT 436 (441)
Q Consensus 383 ~~~~a~~~~~~~~~m~~~~~--~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~~ 436 (441)
++++|.+.++...+...... .-....+..+...+.+ .|++++|.+.++......
T Consensus 387 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 99998775554444322211 0114478888888888 899999999888876543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.71 E-value=1e-13 Score=128.91 Aligned_cols=313 Identities=11% Similarity=-0.021 Sum_probs=241.4
Q ss_pred HHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHH
Q 036107 93 KVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172 (441)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~ 172 (441)
.....+...+.+.|++++|+..|+..... .+.+...|..+...+...|++++|.+.+++..+..+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------- 69 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD---------- 69 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------
Confidence 34555667788899999999999654432 2236889999999999999999999999999886522
Q ss_pred HhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---CcHHHHHHH------------HHHHHhcCCHHHHHHHHHH
Q 036107 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS---LSSQIFDVL------------IHGWCKTRKSDYAQKAMKE 237 (441)
Q Consensus 173 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~ 237 (441)
+...+..+...+...|++++|...|+......+ .+...+..+ ...+...|++++|.+.|++
T Consensus 70 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 70 ----FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 668899999999999999999999999865444 455566555 5788899999999999999
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 036107 238 MFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDT 317 (441)
Q Consensus 238 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 317 (441)
+.+.. +.+...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...|+...+... .+.
T Consensus 146 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~ 222 (359)
T 3ieg_A 146 ILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHK 222 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH
T ss_pred HHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cch
Confidence 98753 3467889999999999999999999999998864 34788999999999999999999999999987532 122
Q ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHhcCChhhHHHHHH
Q 036107 318 SFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE-----THARSLKMCCHKKRMKDGMLVLN 392 (441)
Q Consensus 318 ~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-----t~~~li~~~~~~g~~~~a~~~~~ 392 (441)
..+..+ ...........+...+.+.|++++|++.+++..+.. |+.. .+..+...+.+.|++++|.+.++
T Consensus 223 ~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 296 (359)
T 3ieg_A 223 RCFAHY----KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICS 296 (359)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 221111 000011123344677889999999999999988653 4432 34456778899999999987555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107 393 LMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436 (441)
Q Consensus 393 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 436 (441)
...+ . .+.+...+..+...+.+.|++++|.+.++...+..
T Consensus 297 ~~~~---~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 297 EVLQ---M-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHH---H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHH---h-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4433 2 23367899999999999999999999999877654
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=4.5e-15 Score=139.24 Aligned_cols=269 Identities=10% Similarity=-0.033 Sum_probs=213.1
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 208 (441)
+...|..+...+.+.|++++|.+.|+++....+. +..++..+...+.+.|++++|.+.|++.....
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 129 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG--------------DAEAWQFLGITQAENENEQAAIVALQRCLELQ 129 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4456888899999999999999999999986532 67899999999999999999999999985545
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-----------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-----------GVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 277 (441)
+.+..++..+...|.+.|++++|.+.|+++.+.. |+ ...+..+...+.+.|++++|..+|+++.+..
T Consensus 130 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 207 (365)
T 4eqf_A 130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 5678899999999999999999999999998742 33 2233445788999999999999999998864
Q ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHH
Q 036107 278 CK-PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356 (441)
Q Consensus 278 ~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~ 356 (441)
.. ++..++..+...|.+.|++++|.+.|++..+.. +.+.. +|+.+...|...|++++|+..|
T Consensus 208 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~----------------~~~~l~~~~~~~g~~~~A~~~~ 270 (365)
T 4eqf_A 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYS----------------LWNRLGATLANGDRSEEAVEAY 270 (365)
T ss_dssp CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH----------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH----------------HHHHHHHHHHHcCCHHHHHHHH
Confidence 32 268899999999999999999999999998753 22333 3888999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCC--------CHHHHHHHHHHHHhcCCccHHHHH
Q 036107 357 QKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP--------QESTHKMLAEELEKKSLGNAKERI 428 (441)
Q Consensus 357 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p--------~~~~~~~ll~~~~~~g~~~~a~~~ 428 (441)
++..+.. ..+..++..+...|.+.|++++|.+.++...++......| +...|..+-.++...|+.+.+.++
T Consensus 271 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 271 TRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAA 349 (365)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9988752 2347788999999999999999988777666655443222 367899999999999999998887
Q ss_pred HHH
Q 036107 429 DEL 431 (441)
Q Consensus 429 ~~~ 431 (441)
.+.
T Consensus 350 ~~~ 352 (365)
T 4eqf_A 350 NLG 352 (365)
T ss_dssp HTT
T ss_pred HHh
Confidence 654
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.69 E-value=2.6e-14 Score=131.53 Aligned_cols=269 Identities=10% Similarity=-0.027 Sum_probs=165.0
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 036107 128 HTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC 207 (441)
Q Consensus 128 p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 207 (441)
.+...+..+...+...|++++|.++|+++.+..+. +...+..+...+...|++++|..+++++...
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 85 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF--------------HASCLPVHIGTLVELNKANELFYLSHKLVDL 85 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34455666666666677777777777777664422 3445555666666777777777777776443
Q ss_pred CCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036107 208 ISLSSQIFDVLIHGWCKTR-KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286 (441)
Q Consensus 208 ~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~ 286 (441)
.+.+...+..+...+...| ++++|.+.|++..+.. +.+...|..+...+...|++++|...|++..+.... +...+.
T Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~ 163 (330)
T 3hym_B 86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPML 163 (330)
T ss_dssp CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHH
T ss_pred CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHH
Confidence 4445566677777777777 7777777777776542 224556677777777777777777777776665322 345555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC---
Q 036107 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS--- 363 (441)
Q Consensus 287 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--- 363 (441)
.+...|...|++++|...+++..+... .+.. .|..+...|...|++++|+..+++..+..
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~----------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 226 (330)
T 3hym_B 164 YIGLEYGLTNNSKLAERFFSQALSIAP-EDPF----------------VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI 226 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCC-CChH----------------HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhc
Confidence 566777777777777777777766431 1222 25666666666666777777776665321
Q ss_pred -----CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 036107 364 -----CKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433 (441)
Q Consensus 364 -----~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 433 (441)
...+..++..+...+.+.|++++|.+.++...+ .. +.+...+..+...+.+.|++++|.+.++...
T Consensus 227 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV---LI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp SCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred cccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---hC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 122234666666666777777777553333222 11 2244566666666777777777776666543
No 17
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=9.4e-14 Score=127.60 Aligned_cols=267 Identities=9% Similarity=-0.034 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 209 (441)
...|-.+...+...|++++|.++|+++.+..+. +..++..+...+.+.|++++|.+.|++.....+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 86 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE--------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 345667778889999999999999999886522 678888999999999999999999999865556
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-hhHHHH--------------HH-HHHhcCCHHHHHHHHHHH
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG-VSYTCF--------------IE-HYCREKDFRKVDYTLKEM 273 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l--------------i~-~~~~~g~~~~a~~l~~~m 273 (441)
.+..++..+...|...|++++|.+.|++..+.. |+. ..+..+ .. .+...|++++|...++++
T Consensus 87 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 87 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence 678889999999999999999999999998753 333 333333 22 377889999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHH
Q 036107 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353 (441)
Q Consensus 274 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~ 353 (441)
.+... .+...+..+...+.+.|++++|.+.++++.+... .+.. .|..+...|...|++++|+
T Consensus 165 ~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----------------~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 165 LEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQ----------------LWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp HHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH----------------HHHHHHHHHHHTTCHHHHH
T ss_pred HhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHH----------------HHHHHHHHHHHcCCHHHHH
Confidence 87643 3788999999999999999999999999987531 2232 3888888999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCC--------CHHHHHHHHHHHHhcCCccHH
Q 036107 354 KLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP--------QESTHKMLAEELEKKSLGNAK 425 (441)
Q Consensus 354 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p--------~~~~~~~ll~~~~~~g~~~~a 425 (441)
+.+++..+.. ..+..++..+...+.+.|++++|.+.++...++......+ +...|..+..++.+.|++++|
T Consensus 227 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 227 DAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 9999988653 3356788899999999999999988665444432211011 467899999999999999999
Q ss_pred HHHHHH
Q 036107 426 ERIDEL 431 (441)
Q Consensus 426 ~~~~~~ 431 (441)
..+++.
T Consensus 306 ~~~~~~ 311 (327)
T 3cv0_A 306 ELTYAQ 311 (327)
T ss_dssp HHHTTC
T ss_pred HHHHHH
Confidence 998865
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.66 E-value=6.5e-13 Score=123.50 Aligned_cols=327 Identities=9% Similarity=-0.023 Sum_probs=239.9
Q ss_pred chhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCC-CHHHHHHHHHHH
Q 036107 62 SLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH-TPETYNAMVEAL 140 (441)
Q Consensus 62 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~ 140 (441)
+-..+...|+++.|...+..+.+..... ..++..+...+...|++++|+..|+..... .| +...|..+...+
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGDPDN--YIAYYRRATVFLAMGKSKAALPDLTKVIAL-----KMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCccc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCcchHHHHHHHHH
Confidence 3445567788999999999888754332 256677778888999999999999644432 23 578999999999
Q ss_pred HcCCChhHHHHHHHHHHHhcCCC-ccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHH
Q 036107 141 GKSKKFGLMWELVKEIDELSNGY-VSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLI 219 (441)
Q Consensus 141 ~~~~~~~~a~~l~~~m~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 219 (441)
...|++++|.+.|++..+..+.. ........+........+..+...+...|++++|.+.++.+....+.+...+..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999998854200 11111111100001122233367889999999999999998665567788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH------------H
Q 036107 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT------------I 287 (441)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~------------~ 287 (441)
..+...|++++|...+++..+.. +.+..+|..+...+...|++++|...|++..+.... +...+. .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998763 346789999999999999999999999999875322 333333 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036107 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367 (441)
Q Consensus 288 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 367 (441)
+...+.+.|++++|...+++..+.... +..... ..+..+...+...|++++|++.+++..+.. ..+
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~ 305 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKTEPS-VAEYTV------------RSKERICHCFSKDEKPVEAIRICSEVLQME-PDN 305 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHH------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHH------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccc
Confidence 366789999999999999999885422 221110 125567788899999999999999998752 336
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 036107 368 CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEEL 416 (441)
Q Consensus 368 ~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll~~~ 416 (441)
..++..+...+...|++++|.+ .+++..+ +.|+ ...+..+..+.
T Consensus 306 ~~~~~~~~~~~~~~g~~~~A~~---~~~~a~~--~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 306 VNALKDRAEAYLIEEMYDEAIQ---DYEAAQE--HNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH---HHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHH---HHHHHHh--cCCCChHHHHHHHHHH
Confidence 7788999999999999999977 5555443 3455 44555544443
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.65 E-value=1.2e-13 Score=126.98 Aligned_cols=284 Identities=10% Similarity=-0.043 Sum_probs=221.8
Q ss_pred HHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcC
Q 036107 98 LRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD 177 (441)
Q Consensus 98 l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~ 177 (441)
+...+...|++++|++.|+...... ..+...+..+...+...|++++|.++++++.+..+. +
T Consensus 28 ~a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~ 89 (330)
T 3hym_B 28 LAERHYYNCDFKMCYKLTSVVMEKD----PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS--------------N 89 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------S
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC----CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--------------C
Confidence 3344445588888998886544321 123456777788889999999999999999886532 5
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107 178 TRAMSVLMDTLVKRN-SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256 (441)
Q Consensus 178 ~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 256 (441)
..++..+...+...| ++++|.+.|++.....+.+...|..+...+...|++++|.+.|++..+.. +.+...+..+...
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 168 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLE 168 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHH
Confidence 678888999999999 99999999999865555667789999999999999999999999998753 2245677789999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----C----CCCHHHHHHHHHHHH
Q 036107 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD----C----LTDTSFYSSLIFILS 328 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g----~----~~~~~~~~~li~~~~ 328 (441)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. - +...
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~----------- 236 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE----------- 236 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC-----------
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH-----------
Confidence 999999999999999998864 3467899999999999999999999999887631 0 1111
Q ss_pred hcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCC-CHH
Q 036107 329 KAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP-QES 407 (441)
Q Consensus 329 ~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p-~~~ 407 (441)
..|..+...|...|++++|++.+++..+.. ..+...+..+...+.+.|++++|.+ .+++.. .+.| +..
T Consensus 237 -----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~---~~~~al--~~~p~~~~ 305 (330)
T 3hym_B 237 -----PLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVD---YFHTAL--GLRRDDTF 305 (330)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHH---HHHTTT--TTCSCCHH
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHH---HHHHHH--ccCCCchH
Confidence 238888899999999999999999988653 3356788889999999999999977 555532 3455 566
Q ss_pred HHHHHHHHH-HhcCCcc
Q 036107 408 THKMLAEEL-EKKSLGN 423 (441)
Q Consensus 408 ~~~~ll~~~-~~~g~~~ 423 (441)
.+..+..++ ...|+.+
T Consensus 306 ~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 306 SVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhCchh
Confidence 777777777 3455543
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.65 E-value=5.1e-16 Score=144.95 Aligned_cols=282 Identities=12% Similarity=0.044 Sum_probs=118.1
Q ss_pred hhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhH
Q 036107 69 SLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGL 148 (441)
Q Consensus 69 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~ 148 (441)
.+++++|......+ ++ +.++..|..++.+.|++.+|++.|.. .+|...|..++.++...|++++
T Consensus 16 ~~~ld~A~~fae~~------~~-~~vWs~La~A~l~~g~~~eAIdsfik---------a~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 16 IGNLDRAYEFAERC------NE-PAVWSQLAKAQLQKGMVKEAIDSYIK---------ADDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC------CC-hHHHHHHHHHHHHcCCHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCHHH
Confidence 34566666665543 33 36888888888888888888888831 2577788888888888888888
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCH
Q 036107 149 MWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS 228 (441)
Q Consensus 149 a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 228 (441)
|+..++...+.. .++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+
T Consensus 80 Ai~yl~~ark~~---------------~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~y 138 (449)
T 1b89_A 80 LVKYLQMARKKA---------------RESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMY 138 (449)
T ss_dssp --------------------------------------------CHHHHTTTTT------CC----------------CT
T ss_pred HHHHHHHHHHhC---------------ccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCH
Confidence 888666655521 155677788888888888888777764 26666888888888888888
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308 (441)
Q Consensus 229 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 308 (441)
++|...|..+ ..|..+..++.+.|++++|.+.++.+ .++.+|..++.+|...|+++.|......+
T Consensus 139 eeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L 203 (449)
T 1b89_A 139 DAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI 203 (449)
T ss_dssp TTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT
T ss_pred HHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 8888888866 36888888888888888888888877 26788888888888888888885444432
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 036107 309 KSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGM 388 (441)
Q Consensus 309 ~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 388 (441)
. ..|+. ...++..|.+.|++++|+.+++.-.... .-....|+-+--+|++- +++...
T Consensus 204 ~---~~ad~------------------l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ 260 (449)
T 1b89_A 204 V---VHADE------------------LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMR 260 (449)
T ss_dssp T---TCHHH------------------HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHH
T ss_pred H---hCHhh------------------HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHH
Confidence 2 23322 4457888899999999999999877443 44556777777777665 334433
Q ss_pred HHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCccHHHH
Q 036107 389 LVLNLMREMLSKGIVP------QESTHKMLAEELEKKSLGNAKER 427 (441)
Q Consensus 389 ~~~~~~~~m~~~~~~p------~~~~~~~ll~~~~~~g~~~~a~~ 427 (441)
+.++.+.. .-.+.| +...|.-+.-.|.+.++++.|..
T Consensus 261 ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 261 EHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 33333332 123333 34467777777888888886654
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.64 E-value=5.9e-13 Score=131.32 Aligned_cols=236 Identities=10% Similarity=-0.024 Sum_probs=147.4
Q ss_pred CHHHHHHHHHHhhhCCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 036107 193 SVAHAYKVFLKFKDCISLSS-------QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265 (441)
Q Consensus 193 ~~~~a~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 265 (441)
++++|..+|+.+....+.+. .++..+-..+...|++++|.+.|++..+. .|+..+|..+...+...|++++
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQE 294 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHH
Confidence 55666666665533222222 23444445555666666666666666653 3445566666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc------------
Q 036107 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------------ 333 (441)
Q Consensus 266 a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~------------ 333 (441)
|...|++..+... .+..+|..+...+...|++++|...|++..+.. +.+...+..+...|.+.|+.
T Consensus 295 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 295 FFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666655432 245566666666666666666666666665532 11234555555555555555
Q ss_pred ------chHHHHHHHHHhcCChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhc----------CChhhHHHHHH
Q 036107 334 ------LIYNTMISSACVRSEEGNALKLRQKIEEDS-----CKPDCETHARSLKMCCHK----------KRMKDGMLVLN 392 (441)
Q Consensus 334 ------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~----------g~~~~a~~~~~ 392 (441)
..|..+...|...|++++|++.|++..+.. .......+......+... |++++|...++
T Consensus 373 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~ 452 (537)
T 3fp2_A 373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452 (537)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence 467888888999999999999999876432 111222244445566677 89999977444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107 393 LMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436 (441)
Q Consensus 393 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 436 (441)
+..+. -+.+...+..+...+.+.|++++|.+.++...+..
T Consensus 453 ---~a~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 453 ---KACEL-DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp ---HHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---HHHHh-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 43332 23456789999999999999999999999876654
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.62 E-value=6.3e-14 Score=131.38 Aligned_cols=257 Identities=7% Similarity=-0.093 Sum_probs=197.1
Q ss_pred HHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcC
Q 036107 98 LRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLD 177 (441)
Q Consensus 98 l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~ 177 (441)
+...+.+.|++++|++.|+..... .+.+..+|..+...+.+.|++++|.+.|++..+..+. +
T Consensus 71 ~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------------~ 132 (365)
T 4eqf_A 71 EGLKRLKEGDLPVTILFMEAAILQ----DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN--------------N 132 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------C
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--------------C
Confidence 445666778889999888644332 1236789999999999999999999999999886522 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC----------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL----------SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS-PD 246 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~ 246 (441)
..++..+...+.+.|++++|.+.|+++....+. ....+..+...+.+.|++++|.+.|+++.+.... ++
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 212 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC
Confidence 788999999999999999999999987331111 1233445688899999999999999999875321 15
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 036107 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326 (441)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (441)
..+|..+...+.+.|++++|...|++..+.. +.+..+|..+..+|.+.|++++|...|++..+.. |+..
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~-------- 281 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFI-------- 281 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCch--------
Confidence 7899999999999999999999999998864 3368899999999999999999999999998753 3321
Q ss_pred HHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC---CC--------CCHHHHHHHHHHHHhcCChhhHHHH
Q 036107 327 LSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS---CK--------PDCETHARSLKMCCHKKRMKDGMLV 390 (441)
Q Consensus 327 ~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~--------p~~~t~~~li~~~~~~g~~~~a~~~ 390 (441)
.+|..+...|...|++++|...|++..+.. .. .+...|..+-.++...|+.+.+.++
T Consensus 282 -------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 282 -------RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAA 349 (365)
T ss_dssp -------HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 238888889999999999999999987532 11 1367889999999999999888664
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.61 E-value=2e-13 Score=127.77 Aligned_cols=260 Identities=8% Similarity=-0.049 Sum_probs=203.4
Q ss_pred HHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhc
Q 036107 97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176 (441)
Q Consensus 97 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~ 176 (441)
.+...+.+.|++++|+..|+..... .+.+..+|..+..++.+.|++++|.+.|+++.+..+.
T Consensus 69 ~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------------- 130 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-------------- 130 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC--------------
Confidence 3445666778889999888644332 2236788999999999999999999999999886522
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV---------------LIHGWCKTRKSDYAQKAMKEMFQH 241 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~ 241 (441)
+..++..+...+...|++++|.+.++.+....+.+...+.. .+..+...|++++|...|+++.+.
T Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 210 (368)
T 1fch_A 131 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 210 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 67889999999999999999999999884433333333321 244444889999999999999874
Q ss_pred CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 036107 242 GFS-PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFY 320 (441)
Q Consensus 242 g~~-p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 320 (441)
... ++..++..+...+.+.|++++|...|++..+.. +.+..+|..+...+.+.|++++|...|+++.+.. +.+..
T Consensus 211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~-- 286 (368)
T 1fch_A 211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIR-- 286 (368)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH--
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH--
Confidence 321 147889999999999999999999999998763 3367899999999999999999999999998753 12232
Q ss_pred HHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---C-------CHHHHHHHHHHHHhcCChhhHHHH
Q 036107 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK---P-------DCETHARSLKMCCHKKRMKDGMLV 390 (441)
Q Consensus 321 ~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---p-------~~~t~~~li~~~~~~g~~~~a~~~ 390 (441)
.|..+...|.+.|++++|...|++..+..-. | ...+|..+..++...|+.++|..+
T Consensus 287 --------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 287 --------------SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp --------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred --------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 3888888999999999999999998753211 1 267899999999999999999875
Q ss_pred HH
Q 036107 391 LN 392 (441)
Q Consensus 391 ~~ 392 (441)
++
T Consensus 353 ~~ 354 (368)
T 1fch_A 353 DA 354 (368)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.61 E-value=1.1e-12 Score=118.99 Aligned_cols=258 Identities=14% Similarity=0.073 Sum_probs=197.7
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHH
Q 036107 137 VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD 216 (441)
Q Consensus 137 i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 216 (441)
|+.....|++..|+..++...... |. ........+..+|...|+++.|+..++. ..+|+..++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~---p~----------~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~ 69 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS---PE----------RDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVR 69 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS---HH----------HHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC---ch----------hhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHH
Confidence 344556799999999887754322 10 0134556678899999999999976644 3567888899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 036107 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295 (441)
Q Consensus 217 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 295 (441)
.+...+...++.++|.+.++++...+..|+ ...+..+-..+.+.|++++|++.+++ +.+...+..+...+.+.
T Consensus 70 ~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~ 143 (291)
T 3mkr_A 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKL 143 (291)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHC
Confidence 999999999999999999999988776565 45566666889999999999999998 46788999999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036107 296 KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSL 375 (441)
Q Consensus 296 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 375 (441)
|++++|.+.|+.+.+.. |+... ..+ ....+..+...|++++|+.+|+++.+. ...+...++.+.
T Consensus 144 g~~~~A~~~l~~~~~~~--p~~~~-~~l------------~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la 207 (291)
T 3mkr_A 144 DRLDLARKELKKMQDQD--EDATL-TQL------------ATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQA 207 (291)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHH-HHH------------HHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC--cCcHH-HHH------------HHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHH
Confidence 99999999999998864 44321 111 122333344568999999999999876 356778899999
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccH-HHHHHHHHHHHh
Q 036107 376 KMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNA-KERIDELLTHAT 436 (441)
Q Consensus 376 ~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~m~~~~ 436 (441)
.++.+.|++++|... +++.... -+-+..++..+...+...|+.++ +.++++.+.+..
T Consensus 208 ~~~~~~g~~~eA~~~---l~~al~~-~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGV---LQEALDK-DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHTTCHHHHHHH---HHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHH---HHHHHHh-CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999999999999884 4444332 13367789999999999999976 578888776554
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=1.8e-13 Score=125.75 Aligned_cols=255 Identities=11% Similarity=-0.005 Sum_probs=197.6
Q ss_pred cCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHH
Q 036107 101 RYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRA 180 (441)
Q Consensus 101 ~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 180 (441)
.+.+.|++++|+..|+..... .+.+...|..+...+...|++++|.+.++++.+..+. +..+
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------~~~~ 91 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQA----APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--------------DIAV 91 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC--------------CHHH
Confidence 344556777777777543322 1226778889999999999999999999999886522 6778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHhhCCCCC
Q 036107 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVL--------------IH-GWCKTRKSDYAQKAMKEMFQHGFSP 245 (441)
Q Consensus 181 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~g~~p 245 (441)
+..+...+...|++++|.+.++......+.+...+..+ .. .+...|++++|.+.++++.+.. +.
T Consensus 92 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~ 170 (327)
T 3cv0_A 92 HAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PN 170 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CC
Confidence 88899999999999999999998854333333334333 22 3777889999999999998753 23
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 036107 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325 (441)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (441)
+..++..+...+.+.|++++|...+++..+.. +.+..++..+...+...|++++|...|++..+... .+..
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~------- 241 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVR------- 241 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH-------
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHH-------
Confidence 67889999999999999999999999998764 33678899999999999999999999999887531 2232
Q ss_pred HHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCChhhHHHHHH
Q 036107 326 ILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP-----------DCETHARSLKMCCHKKRMKDGMLVLN 392 (441)
Q Consensus 326 ~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------~~~t~~~li~~~~~~g~~~~a~~~~~ 392 (441)
.|..+...|...|++++|.+.+++..+..-.. +..++..+..++.+.|+.++|..+++
T Consensus 242 ---------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 242 ---------VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred ---------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 37888888999999999999999987543221 46788899999999999999977544
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.58 E-value=1.3e-12 Score=118.44 Aligned_cols=269 Identities=12% Similarity=0.077 Sum_probs=181.7
Q ss_pred hhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhH
Q 036107 69 SLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGL 148 (441)
Q Consensus 69 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~ 148 (441)
.|+.+.+................ .....+...|...|+++.|+..++. .-.|+..++..+...+...++.++
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~-e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDV-ERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHH-HHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhH-HHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34455555544333332222211 2334456777788888888877631 234567788888888888888999
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCH
Q 036107 149 MWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS 228 (441)
Q Consensus 149 a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 228 (441)
|++.++++...+ ..|. +...+..+-..+...|++++|++.+++ +.+...+..+...|.+.|++
T Consensus 84 A~~~l~~ll~~~-~~P~-----------~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 84 IVAELDREMSRS-VDVT-----------NTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRL 146 (291)
T ss_dssp HHHHHHHHHHSC-CCCS-----------CHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcc-cCCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCH
Confidence 999998887643 1222 556677777888888999999988877 46777888888888999999
Q ss_pred HHHHHHHHHHhhCCCCCCHhhH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036107 229 DYAQKAMKEMFQHGFSPDGVSY---TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305 (441)
Q Consensus 229 ~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 305 (441)
++|.+.|+++.+. .|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|
T Consensus 147 ~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 147 DLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999988875 3553211 12223334458889999999988876 4457888888888889999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 036107 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN-ALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384 (441)
Q Consensus 306 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 384 (441)
++..+.. +-+..+ +..++..+...|+.++ +.++++++.+. .|+.... .+...+.+.+
T Consensus 224 ~~al~~~-p~~~~~----------------l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~---~d~~~~~~~f 281 (291)
T 3mkr_A 224 QEALDKD-SGHPET----------------LINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFI---KEYRAKENDF 281 (291)
T ss_dssp HHHHHHC-TTCHHH----------------HHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHH---HHHHHHHHHH
T ss_pred HHHHHhC-CCCHHH----------------HHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHH---HHHHHHHHHH
Confidence 8877643 123333 6677777777887765 56788877754 5554322 3334444455
Q ss_pred hhH
Q 036107 385 KDG 387 (441)
Q Consensus 385 ~~a 387 (441)
+++
T Consensus 282 d~~ 284 (291)
T 3mkr_A 282 DRL 284 (291)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.58 E-value=2.1e-13 Score=127.33 Aligned_cols=155 Identities=10% Similarity=0.049 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 036107 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR 259 (441)
Q Consensus 180 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 259 (441)
+|..+...|...|++++|...|+.+. .|..+..++.+.|++++|.+.+.++ .++.+|..++.+|+.
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a~--------n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 189 (449)
T ss_dssp -------------CTTTHHHHHHHTT--------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhh--------hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHH
Confidence 44445555555555555555554442 2444555555555555555555444 144445555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc------
Q 036107 260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF------ 333 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~------ 333 (441)
.|+++.|......+ ..++.-...++..|.+.|++++|..+++...... +-....|+-+-.+|++-..-
T Consensus 190 ~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl 263 (449)
T 1b89_A 190 GKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHL 263 (449)
T ss_dssp TTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 55555553322221 1122222234444555555555554444444322 22233333333333332211
Q ss_pred -------------------chHHHHHHHHHhcCChhHHHH
Q 036107 334 -------------------LIYNTMISSACVRSEEGNALK 354 (441)
Q Consensus 334 -------------------~~~~~li~~~~~~g~~~~a~~ 354 (441)
..|.-+.-.|...++++.|..
T Consensus 264 ~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 264 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 568999999999999998866
No 28
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.57 E-value=1.2e-12 Score=129.08 Aligned_cols=299 Identities=10% Similarity=0.037 Sum_probs=212.3
Q ss_pred HHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHH
Q 036107 93 KVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172 (441)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~ 172 (441)
..+..+...+.+.|++++|++.|+..... .+.+...|..+..++.+.|++++|.+.|+++.+..+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------- 91 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIEL----DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD---------- 91 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----------
Confidence 44555667888889999999999654433 1236788999999999999999999999998886532
Q ss_pred HhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHH---------------------------------------
Q 036107 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQ--------------------------------------- 213 (441)
Q Consensus 173 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------------------------------------- 213 (441)
+..++..+...+...|++++|.+.|+.+.. .|+..
T Consensus 92 ----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 165 (537)
T 3fp2_A 92 ----HSKALLRRASANESLGNFTDAMFDLSVLSL--NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT 165 (537)
T ss_dssp ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH
T ss_pred ----hHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh
Confidence 678889999999999999999999975532 12111
Q ss_pred ------------------------------HHHHHHHHHHhc--------CCHHHHHHHHHHHhhCCCCCC--------H
Q 036107 214 ------------------------------IFDVLIHGWCKT--------RKSDYAQKAMKEMFQHGFSPD--------G 247 (441)
Q Consensus 214 ------------------------------~~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~--------~ 247 (441)
....+...+... |++++|..+|+++.+. .|+ .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~ 243 (537)
T 3fp2_A 166 SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAA 243 (537)
T ss_dssp HHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHH
Confidence 011111111111 3567777777777654 233 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 036107 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327 (441)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 327 (441)
.+|..+-..+...|++++|...|++..+.. |+...+..+...+...|++++|...|++..+... .+.
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~---------- 310 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYP---------- 310 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCH----------
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCH----------
Confidence 245566666777778888888888777653 4466777777777788888888888887766431 122
Q ss_pred HhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHH
Q 036107 328 SKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407 (441)
Q Consensus 328 ~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~ 407 (441)
.+|..+...|...|++++|++.+++..+.. .-+...+..+...+...|++++|.+.++ +..+. .+.+..
T Consensus 311 ------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~---~~~~~-~~~~~~ 379 (537)
T 3fp2_A 311 ------PTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFN---ETKLK-FPTLPE 379 (537)
T ss_dssp ------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHH---HHHHH-CTTCTH
T ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHh-CCCChH
Confidence 348888888999999999999999998753 2245678889999999999999987544 44332 233466
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107 408 THKMLAEELEKKSLGNAKERIDELLTHATE 437 (441)
Q Consensus 408 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 437 (441)
.+..+...+.+.|++++|.+.++...+...
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 888999999999999999999999766543
No 29
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=1.3e-11 Score=108.95 Aligned_cols=209 Identities=10% Similarity=-0.008 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 209 (441)
...|..+...+...|++++|.+.|+++....+. +..++..+...+...|++++|.+.+++.....+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS--------------SADAHAALAVVFQTEMEPKLADEEYRKALASDS 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 467888888999999999999999998885422 677888899999999999999999998855445
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 288 (441)
.+...+..+...|...|++++|.++|+++...+..| +...+..+...+...|++++|.+.|++..+... .+...+..+
T Consensus 103 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 181 (252)
T 2ho1_A 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEM 181 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHH
Confidence 577888999999999999999999999998743445 456788888899999999999999999877642 357888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 036107 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368 (441)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 368 (441)
...+.+.|++++|...++...+... .+... +..+...+...|+.++|.+.++++.+. .|+.
T Consensus 182 a~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~----------------~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~ 242 (252)
T 2ho1_A 182 ADLLYKEREYVPARQYYDLFAQGGG-QNARS----------------LLLGIRLAKVFEDRDTAASYGLQLKRL--YPGS 242 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSC-CCHHH----------------HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc-CcHHH----------------HHHHHHHHHHccCHHHHHHHHHHHHHH--CCCC
Confidence 9999999999999999999887532 23322 677777888888899999999988765 4554
Q ss_pred HHHH
Q 036107 369 ETHA 372 (441)
Q Consensus 369 ~t~~ 372 (441)
..+.
T Consensus 243 ~~~~ 246 (252)
T 2ho1_A 243 LEYQ 246 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 30
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=1.5e-11 Score=106.18 Aligned_cols=210 Identities=10% Similarity=-0.030 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 208 (441)
+...|..+...+...|++++|.+.|++..+..+. +...+..+...+...|++++|.+.+++.....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK--------------NELAWLVRAEIYQYLKVNDKAQESFRQALSIK 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc--------------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 3556777777777788888888888777765422 45667777777777788888877777764434
Q ss_pred CCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036107 209 SLSSQIFDVLIHGWCKT-RKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCT 286 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~ 286 (441)
+.+..++..+...+... |++++|.+.|+++.+.+..|+ ...+..+...+...|++++|...++++.+... .+...+.
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 151 (225)
T 2vq2_A 73 PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFK 151 (225)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHH
T ss_pred CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHH
Confidence 45666677777777777 777777777777776322232 45666777777777777777777777766432 2466677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036107 287 IVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366 (441)
Q Consensus 287 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 366 (441)
.+...+.+.|++++|...+++..+.....+... +..+...+...|+.+.|..+++.+.+. .|
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p 213 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADD----------------LLLGWKIAKALGNAQAAYEYEAQLQAN--FP 213 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHH----------------HHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH----------------HHHHHHHHHhcCcHHHHHHHHHHHHHh--CC
Confidence 777777777777777777777665422122322 555555666666777777777666543 34
Q ss_pred CHHHH
Q 036107 367 DCETH 371 (441)
Q Consensus 367 ~~~t~ 371 (441)
+...+
T Consensus 214 ~~~~~ 218 (225)
T 2vq2_A 214 YSEEL 218 (225)
T ss_dssp TCHHH
T ss_pred CCHHH
Confidence 44433
No 31
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.46 E-value=3.9e-12 Score=113.77 Aligned_cols=254 Identities=8% Similarity=-0.080 Sum_probs=187.2
Q ss_pred hcCCChHHHHHHHhhhhhHhhhhcCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCH
Q 036107 100 KRYPSPDKVVEALKCFCFTWAKTQTGYMH-TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT 178 (441)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~ 178 (441)
......|++++|++.|+...... ..-.| +..+|..+...+...|++++|.+.|++..+..+. +.
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--------------~~ 77 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASR-ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--------------MP 77 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------------CH
T ss_pred eccCccchHHHHHHHHHHHHhcc-cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC--------------cH
Confidence 45677799999999986443321 01111 4668899999999999999999999999886532 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258 (441)
Q Consensus 179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 258 (441)
.++..+...+...|++++|.+.|++.....+.+...+..+...|.+.|++++|.+.|+++.+. .|+.......+..+.
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~ 155 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAE 155 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 888999999999999999999999885544556788999999999999999999999999874 466555566666667
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHH
Q 036107 259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNT 338 (441)
Q Consensus 259 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~ 338 (441)
..|++++|...+++..... +++...+. +...+...++.++|...+....+........ .. ..|..
T Consensus 156 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~---------~~~~~ 220 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEH----LS---------ETNFY 220 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHH----HH---------HHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhccccccccc----cc---------HHHHH
Confidence 7899999999998876653 23434443 6777788888899999998887643211000 00 23788
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 036107 339 MISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389 (441)
Q Consensus 339 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 389 (441)
+...|...|++++|...|++..+. .|+. +.....++...|++++|.+
T Consensus 221 la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 221 LGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQD 267 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHH
Confidence 888899999999999999998864 4533 2223445667777777755
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.46 E-value=5.6e-11 Score=104.89 Aligned_cols=224 Identities=11% Similarity=0.025 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--- 206 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--- 206 (441)
...|..+-..+...|++++|.+.|++..+.. . +..++..+...+...|++++|.+.++....
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~--------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 69 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K--------------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGR 69 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C--------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c--------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence 4578888888999999999999999988754 1 667888889999999999999999988632
Q ss_pred CCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 036107 207 CISLS----SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV 282 (441)
Q Consensus 207 ~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 282 (441)
...++ ..++..+...|.+.|++++|.+.|++..+. .|+. ..+.+.|++++|...++++.+.. +.+.
T Consensus 70 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 139 (258)
T 3uq3_A 70 EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKA 139 (258)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchH
Confidence 22222 577888889999999999999999998873 3553 34666788999999999987753 2246
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036107 283 ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362 (441)
Q Consensus 283 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 362 (441)
..+..+...+...|++++|...|++..+... .+.. .|..+...|...|++++|++.+++..+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~----------------~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDAR----------------GYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHH----------------HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 6788888889999999999999999887532 1232 3777888888889999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 036107 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMRE 396 (441)
Q Consensus 363 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 396 (441)
. ..+...+..+...+.+.|++++|.+.++...+
T Consensus 203 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 203 D-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 33467788888889999999999776554444
No 33
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=3.8e-11 Score=103.61 Aligned_cols=201 Identities=8% Similarity=-0.034 Sum_probs=154.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 256 (441)
+...+..+...+...|++++|.+.|+......+.+...+..+...|...|++++|.+.|++..+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 466778888888899999999999988755445567788888888999999999999998887642 2356788888888
Q ss_pred HHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccc
Q 036107 257 YCRE-KDFRKVDYTLKEMQEKGCKPS-VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFL 334 (441)
Q Consensus 257 ~~~~-g~~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 334 (441)
+... |++++|...++++.+.+..|+ ...+..+..++.+.|++++|...|+++.+... .+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~---------------- 148 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPP---------------- 148 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHH----------------
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCch----------------
Confidence 8899 999999999998887433333 56788888888999999999999988877431 1232
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 036107 335 IYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMR 395 (441)
Q Consensus 335 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 395 (441)
.+..+...+...|++++|.+.+++..+..-..+...+..+...+...|+.+.+..+++.+.
T Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 2777778888888889999999888765322466667777777788888888877555443
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.45 E-value=1.2e-11 Score=106.82 Aligned_cols=199 Identities=13% Similarity=0.007 Sum_probs=156.4
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 036107 127 MHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD 206 (441)
Q Consensus 127 ~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 206 (441)
+++...|..+-..+.+.|++++|...|++..+..|. +...+..+-..+.+.|++++|+..|++.-.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 67 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ--------------DPEALYWLARTQLKLGLVNPALENGKTLVA 67 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356778888999999999999999999999885533 778899999999999999999999998855
Q ss_pred CCCCcHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036107 207 CISLSSQIFDVLIHGWCKT-----------RKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274 (441)
Q Consensus 207 ~~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 274 (441)
..+.+...+..+-..+.+. |++++|...|++..+. .| +...|..+-..+...|++++|...|++..
T Consensus 68 ~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 145 (217)
T 2pl2_A 68 RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQAL 145 (217)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4456778899999999999 9999999999999874 34 46788888899999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHH
Q 036107 275 EKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALK 354 (441)
Q Consensus 275 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~ 354 (441)
+.. .+...+..+..++...|++++|...|+...+.. +.+.. .+..+...+...|++++|++
T Consensus 146 ~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~----------------~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 146 ALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLD----------------LRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHH----------------HHHHHHHHHTC---------
T ss_pred hcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH----------------HHHHHHHHHHHccCHHHHHH
Confidence 887 688999999999999999999999999998753 12332 37778888889999999999
Q ss_pred HHHHHH
Q 036107 355 LRQKIE 360 (441)
Q Consensus 355 ~~~~m~ 360 (441)
.|++..
T Consensus 207 ~~~~~~ 212 (217)
T 2pl2_A 207 AAALEH 212 (217)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 888764
No 35
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.44 E-value=6.6e-09 Score=101.31 Aligned_cols=326 Identities=12% Similarity=0.049 Sum_probs=206.8
Q ss_pred hhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHc----CC
Q 036107 69 SLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGK----SK 144 (441)
Q Consensus 69 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~----~~ 144 (441)
.++.+.|...+....+.|.......+..+........++.++|++.|+..-. .| +...+..+-..|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL---KG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---TT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---CC---CHHHHHHHHHHHHcCCCCCC
Confidence 3556666666666666543322212222222222336777888877753322 22 55666666666766 67
Q ss_pred ChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCcHHHHHHHHH
Q 036107 145 KFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK----RNSVAHAYKVFLKFKDCISLSSQIFDVLIH 220 (441)
Q Consensus 145 ~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 220 (441)
++++|.+.|++..+.+ +...+..|-..|.. .++.++|.+.|++.-+. .+...+..|-.
T Consensus 130 ~~~~A~~~~~~a~~~~----------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~ 191 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG----------------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGY 191 (490)
T ss_dssp CHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 7888888888777655 55666666666666 67777777777766331 24555666666
Q ss_pred HHHh----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036107 221 GWCK----TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHAL 292 (441)
Q Consensus 221 ~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~ 292 (441)
.|.. .++.++|.++|++..+.| +...+..+-..|.. .+++++|...|++..+.| +...+..+-..|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 6666 677777777777776653 45556666666664 667777777777766653 344555555556
Q ss_pred Hh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-----Ccc----------------chHHHHHHHHHhcC
Q 036107 293 EK----AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA-----VRF----------------LIYNTMISSACVRS 347 (441)
Q Consensus 293 ~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~----------------~~~~~li~~~~~~g 347 (441)
.. .+++++|...|+...+.| +...+..+-..|... ++. ..+..+-..|...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Confidence 55 677777777777776654 333444444444443 222 34555555665555
Q ss_pred ---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 036107 348 ---EEGNALKLRQKIEEDSCKPDCETHARSLKMCCH----KKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK-- 418 (441)
Q Consensus 348 ---~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~-- 418 (441)
+.++|++.|++..+.| +...+..+-..|.. .+++++|.+ .+++..+.| +...+..|-..|.+
T Consensus 343 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~---~~~~A~~~~---~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAI---WMRKAAEQG---LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH---HHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred CcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH---HHHHHHhCC---CHHHHHHHHHHHHcCC
Confidence 6788999998887764 56677777777777 788888866 555555554 46677778888877
Q ss_pred --cCCccHHHHHHHHHHHHh
Q 036107 419 --KSLGNAKERIDELLTHAT 436 (441)
Q Consensus 419 --~g~~~~a~~~~~~m~~~~ 436 (441)
.++.++|.+.++......
T Consensus 414 g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCC
Confidence 789999999888866544
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.43 E-value=4.8e-11 Score=105.26 Aligned_cols=198 Identities=11% Similarity=0.008 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY 257 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 257 (441)
...+..+...+...|++++|.+.|++.....+.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45566667777778888888888877744444566677777778888888888888888776642 22566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchH
Q 036107 258 CREKDFRKVDYTLKEMQEKGCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336 (441)
Q Consensus 258 ~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~ 336 (441)
...|++++|.++++++.+.+..| +...+..+...+.+.|++++|.+.|++..+... .+.. .+
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----------------~~ 178 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPS----------------VA 178 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHH----------------HH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHH----------------HH
Confidence 78888888888888776633334 456667777777788888888888877766431 1222 26
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 036107 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394 (441)
Q Consensus 337 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~ 394 (441)
..+...|...|++++|...+++..+.. ..+...+..+...+...|+.++|.++++.+
T Consensus 179 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 179 LEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666777777777788888887776532 344556666777777778877776644433
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.43 E-value=1.3e-10 Score=103.63 Aligned_cols=240 Identities=13% Similarity=0.023 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HhhHHHHHH
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD--GVSYTCFIE 255 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~ 255 (441)
...+......+...|++++|+..|+......+.+...+..+...|...|++++|.+.|++..+.+-.|+ ..+|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344556667888999999999999998554455666889999999999999999999999998432222 234889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccch
Q 036107 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335 (441)
Q Consensus 256 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (441)
.+...|++++|...|++..+... .+..+|..+...|...|++++|...|++..+.. +.+...
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~---------------- 144 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKV---------------- 144 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHH----------------
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHH----------------
Confidence 99999999999999999988643 256789999999999999999999999998762 223322
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC---hhhHHHHHHHHHHHHHCCCCCC----HH
Q 036107 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPD-CETHARSLKMCCHKKR---MKDGMLVLNLMREMLSKGIVPQ----ES 407 (441)
Q Consensus 336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~---~~~a~~~~~~~~~m~~~~~~p~----~~ 407 (441)
|..+...+...+++++|++.|++..+. .|+ ...+..+...+...|+ +++|...++...++....-.++ ..
T Consensus 145 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 222 (272)
T 3u4t_A 145 FYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIE 222 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 555552333445999999999998865 344 5677777788888888 8888876665555443222221 25
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107 408 THKMLAEELEKKSLGNAKERIDELLTHATE 437 (441)
Q Consensus 408 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 437 (441)
.|..+-..|.+.|++++|.+.++.......
T Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 223 ANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 788888999999999999999998876654
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.43 E-value=5.4e-11 Score=104.98 Aligned_cols=227 Identities=11% Similarity=-0.013 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCC----HhhHH
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF--SPD----GVSYT 251 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~ 251 (441)
...+..+-..+...|++++|.+.|+...... .+...+..+..+|...|++++|.+.|++..+... .|+ ..+|.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 4677888889999999999999999984433 7888999999999999999999999999876321 112 57889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 036107 252 CFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331 (441)
Q Consensus 252 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 331 (441)
.+...+...|++++|...|++..+.. |+. ..+.+.|++++|...++.+.... |+..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~--~~~~------------- 139 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN--PEKA------------- 139 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC--HHHH-------------
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC--cchH-------------
Confidence 99999999999999999999998853 443 34667789999999999998852 3222
Q ss_pred ccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036107 332 RFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKM 411 (441)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ 411 (441)
..|..+...+...|++++|++.+++..+.. ..+..++..+...+...|++++|.+.++...+ . .+.+...|..
T Consensus 140 --~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~-~~~~~~~~~~ 212 (258)
T 3uq3_A 140 --EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE---K-DPNFVRAYIR 212 (258)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H-CTTCHHHHHH
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---h-CHHHHHHHHH
Confidence 237888888999999999999999998654 34577889999999999999999875544333 2 2335778999
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHHh
Q 036107 412 LAEELEKKSLGNAKERIDELLTHAT 436 (441)
Q Consensus 412 ll~~~~~~g~~~~a~~~~~~m~~~~ 436 (441)
+...+.+.|++++|.+.++...+..
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999877655
No 39
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.40 E-value=4.5e-11 Score=104.64 Aligned_cols=201 Identities=11% Similarity=0.022 Sum_probs=122.8
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 208 (441)
....|..+...+...|++++|.+.|++..+..+. +...+..+...+.+.|++++|.+.|+......
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 87 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE--------------DAIPYINFANLLSSVNELERALAFYDKALELD 87 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4456666677777777778777777777664311 55677777777777788888877777764434
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 288 (441)
+.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+.+.|++++|...+++..+... .+...+..+
T Consensus 88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 165 (243)
T 2q7f_A 88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQF 165 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHH
Confidence 4566677777777777777777777777776542 23556677777777777777777777777766532 256667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036107 289 MHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED 362 (441)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 362 (441)
...+.+.|++++|...|++..+... .+.. +|..+...|...|++++|.+.+++..+.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----------------~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQDP-GHAD----------------AFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHCT-TCHH----------------HHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc-ccHH----------------HHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777777777777777765421 1222 2666666777777777777777777653
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.39 E-value=2.7e-09 Score=95.38 Aligned_cols=218 Identities=14% Similarity=0.058 Sum_probs=172.4
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHh----cCCHHHHHHHHHHh
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK----RNSVAHAYKVFLKF 204 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~ 204 (441)
++.++..+-..+...|++++|.+.|++..+.+ +..++..+-..+.. .+++++|.+.|++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 68 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----------------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA 68 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH
Confidence 56777788888888899999999999888754 66778888888888 89999999999887
Q ss_pred hhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 036107 205 KDCISLSSQIFDVLIHGWCK----TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----EKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 205 ~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~ 276 (441)
-.. -+...+..+-..|.. .+++++|.+.|++..+.+ +...+..+-..|.. .+++++|...|++..+.
T Consensus 69 ~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 69 CDL--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL 143 (273)
T ss_dssp HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHC--CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence 432 266778888888888 899999999999888764 67788888888888 89999999999998886
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHh----cCC
Q 036107 277 GCKPSVITCTIVMHALEK----AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACV----RSE 348 (441)
Q Consensus 277 g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~----~g~ 348 (441)
+ +...+..+-..|.. .+++++|...|++..+.+ +... +..+-..|.. .++
T Consensus 144 ~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a----------------~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 144 N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPG----------------CFNAGNMYHHGEGATKN 201 (273)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH----------------HHHHHHHHHHTCSSCCC
T ss_pred C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH----------------HHHHHHHHHcCCCCCcc
Confidence 5 56677777777887 889999999999888765 2222 5666666777 888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHH
Q 036107 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCH----KKRMKDGMLVLN 392 (441)
Q Consensus 349 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~ 392 (441)
+++|++.|++..+.+ +...+..+-..|.+ .+++++|.+.++
T Consensus 202 ~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~ 246 (273)
T 1ouv_A 202 FKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFK 246 (273)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHH
T ss_pred HHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 899999998887764 25666777777877 888888876433
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.39 E-value=1.6e-11 Score=109.78 Aligned_cols=251 Identities=9% Similarity=-0.095 Sum_probs=186.3
Q ss_pred HcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHH
Q 036107 141 GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIH 220 (441)
Q Consensus 141 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 220 (441)
...|++++|++.|+++.+..+..++ .+..++..+...+...|++++|...|++.-...+.+..+|..+..
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 85 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDD----------ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGI 85 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCc----------hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 3457899999999999885321111 156788999999999999999999999985555667889999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 036107 221 GWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYE 300 (441)
Q Consensus 221 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 300 (441)
.|...|++++|.+.|++..+.. +.+..+|..+...+.+.|++++|...|+++.+.. |+.......+..+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~ 162 (275)
T 1xnf_A 86 YLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQ 162 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHH
Confidence 9999999999999999998742 2357889999999999999999999999998753 444445555566678899999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--C-CHHHHHHHHHH
Q 036107 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK--P-DCETHARSLKM 377 (441)
Q Consensus 301 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p-~~~t~~~li~~ 377 (441)
|...+....... +++.. ...++..+...++.++|++.+++....... | +...+..+...
T Consensus 163 A~~~~~~~~~~~-~~~~~-----------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 224 (275)
T 1xnf_A 163 AKEVLKQHFEKS-DKEQW-----------------GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY 224 (275)
T ss_dssp HHHHHHHHHHHS-CCCST-----------------HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CcchH-----------------HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHH
Confidence 999998877643 22221 223666677788889999999887643211 1 14678888999
Q ss_pred HHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHH
Q 036107 378 CCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERID 429 (441)
Q Consensus 378 ~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 429 (441)
+.+.|++++|.. .+++... ..|+. +.....++...|++++|.+-+
T Consensus 225 ~~~~g~~~~A~~---~~~~al~--~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 225 YLSLGDLDSATA---LFKLAVA--NNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHTTCHHHHHH---HHHHHHT--TCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHcCCHHHHHH---HHHHHHh--CCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 999999999977 5555443 34532 223345667778888777655
No 42
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.39 E-value=6.6e-10 Score=115.88 Aligned_cols=269 Identities=10% Similarity=0.014 Sum_probs=194.9
Q ss_pred ChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHH
Q 036107 104 SPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV 183 (441)
Q Consensus 104 ~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (441)
..+++++|.+..... -++.+|..+-.++.+.|++++|.+.|.+. + |...|.-
T Consensus 1088 ~i~nldrAiE~Aerv---------n~p~vWsqLAKAql~~G~~kEAIdsYiKA---d----------------D~say~e 1139 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC---------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---D----------------DPSSYME 1139 (1630)
T ss_pred HHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc---C----------------ChHHHHH
Confidence 445566666655211 25778889999999999999999998653 3 7788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH
Q 036107 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 263 (441)
++.++.+.|++++|.+.+...+... ++....+.+..+|++.+++++...+. + .++...|..+-..|...|++
T Consensus 1140 Va~~~~~lGkyEEAIeyL~mArk~~-~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A 1140 VVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhc-ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCH
Confidence 9999999999999999998765432 33334445889999998888644432 2 25677788888899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcc----------
Q 036107 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRF---------- 333 (441)
Q Consensus 264 ~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---------- 333 (441)
++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+-.+|...|+.
T Consensus 1212 eeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I 1276 (1630)
T 1xi4_A 1212 DAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI 1276 (1630)
T ss_pred HHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 9999999984 489999999999999999999998773 456777666666555554
Q ss_pred ----chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCC-----
Q 036107 334 ----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP----- 404 (441)
Q Consensus 334 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p----- 404 (441)
..+..++..|.+.|.+++|+.+++.-.... .-....|+-+-..+++. ..++..+.++.+.. .-.+.|
T Consensus 1277 iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy-~peklmEhlk~f~~--rini~k~~r~~ 1352 (1630)
T 1xi4_A 1277 VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWS--RVNIPKVLRAA 1352 (1630)
T ss_pred hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC-CHHHHHHHHHHHHH--hcccchHhHHH
Confidence 356788889999999999999997765332 22333565566666654 33433333444444 223333
Q ss_pred -CHHHHHHHHHHHHhcCCccHHHH
Q 036107 405 -QESTHKMLAEELEKKSLGNAKER 427 (441)
Q Consensus 405 -~~~~~~~ll~~~~~~g~~~~a~~ 427 (441)
+...|.-++-.|.+.|+++.|..
T Consensus 1353 e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1353 EQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHH
Confidence 45679999999999999998873
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.39 E-value=2.7e-09 Score=95.39 Aligned_cols=224 Identities=12% Similarity=-0.024 Sum_probs=187.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCK----TRKSDYAQKAMKEMFQHGFSPDGVSYTC 252 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 252 (441)
+..++..+-..+...|++++|.+.|++..+ .-+...+..+-..|.. .+++++|.+.|++..+.+ +...+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 677888888899999999999999998754 3455678888889999 999999999999999875 7888889
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 036107 253 FIEHYCR----EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK----AKQIYEALKVYEKMKSDDCLTDTSFYSSLI 324 (441)
Q Consensus 253 li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 324 (441)
+-..|.. .+++++|...|++..+.+ +...+..+-..|.. .+++++|...|++..+.+ +...
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a----- 148 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDG----- 148 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHH-----
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHH-----
Confidence 9999999 999999999999998875 77888999999999 999999999999999876 3333
Q ss_pred HHHHhcCccchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHH
Q 036107 325 FILSKAVRFLIYNTMISSACV----RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH----KKRMKDGMLVLNLMRE 396 (441)
Q Consensus 325 ~~~~~~g~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~ 396 (441)
+..+-..|.. .+++++|+..|++..+.+ +...+..+-..|.. .+++++|.+ .+++
T Consensus 149 -----------~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~---~~~~ 211 (273)
T 1ouv_A 149 -----------CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALA---RYSK 211 (273)
T ss_dssp -----------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHH---HHHH
T ss_pred -----------HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHH---HHHH
Confidence 5566666666 899999999999988764 46777788888888 999999977 5555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHh
Q 036107 397 MLSKGIVPQESTHKMLAEELEK----KSLGNAKERIDELLTHAT 436 (441)
Q Consensus 397 m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~ 436 (441)
..+.+ +...+..+-..|.+ .+++++|.+.++......
T Consensus 212 a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 212 ACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 55443 26778888888888 999999999998866544
No 44
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.38 E-value=7.3e-10 Score=115.58 Aligned_cols=310 Identities=12% Similarity=0.078 Sum_probs=169.2
Q ss_pred cccccchhhHHHhhhhchhhHHHHHhhhcCc-hhhHHHHHHHHH--hcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHH
Q 036107 57 DFVIPSLASWVESLKLNEQSRISSHALSEDH-ETDVDKVSEILR--KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETY 133 (441)
Q Consensus 57 ~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y 133 (441)
.-.+...+++..++.+.++..+++.+...+- ..+-..+.+.|+ ....+.+++.+.+.-++ ....
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd-------------~~d~ 1052 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD-------------NYDA 1052 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhh-------------hccH
Confidence 3445556677777777777777777764321 111224555544 23334455555444431 1112
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhcCC-Ccc------H-HHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 036107 134 NAMVEALGKSKKFGLMWELVKEIDELSNG-YVS------L-AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205 (441)
Q Consensus 134 ~~li~~~~~~~~~~~a~~l~~~m~~~~~~-~~~------~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 205 (441)
..+-..+...|.+++|.++|++....... ... + ......-+.-++.+|..+-.++.+.|++++|.+.|.+.
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 23445566677777777777774321100 000 0 00000001114566666666666666666666666443
Q ss_pred hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036107 206 DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285 (441)
Q Consensus 206 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 285 (441)
-|...|..++.++.+.|++++|.+.|..-++.. ++....+.+..+|++.+++++..... + .++...|
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~ 1198 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHI 1198 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHH
Confidence 234445556666666666666666666544432 33333444666666666655433322 1 2344555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 036107 286 TIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365 (441)
Q Consensus 286 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 365 (441)
..+-..|...|++++|..+|... ..|..+...|++.|++++|++.+++-
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA-------------------------~ny~rLA~tLvkLge~q~AIEaarKA------ 1247 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV-------------------------SNFGRLASTLVHLGEYQAAVDGARKA------ 1247 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh-------------------------hHHHHHHHHHHHhCCHHHHHHHHHHh------
Confidence 55666666666666666666653 22777777777777777777777664
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 036107 366 PDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432 (441)
Q Consensus 366 p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 432 (441)
-+..+|..+-.+|...|++..|... . .++..+...+..++..|.+.|.+++|..+++.-
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~c---g-----l~Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMC---G-----LHIVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHH---H-----HhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2446666666666666666666431 1 124455566666777777777777777666543
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.37 E-value=1.3e-10 Score=100.35 Aligned_cols=192 Identities=11% Similarity=-0.045 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 256 (441)
+...+..+-..+.+.|++++|...|++.-...+.+...+..+-..+.+.|++++|...|++..+.. +.+...+..+-..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 344555555566666666666666666544344455556666666666666666666666665532 1134455555555
Q ss_pred HHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 036107 257 YCRE-----------KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325 (441)
Q Consensus 257 ~~~~-----------g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (441)
+.+. |++++|...|++..+... -+...+..+-.++...|++++|...|++..+.. .+...
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~------ 153 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEI------ 153 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH------
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHH------
Confidence 6665 666666666665555321 134555555555566666666666666555544 23322
Q ss_pred HHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 036107 326 ILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGML 389 (441)
Q Consensus 326 ~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 389 (441)
+..+-..|...|++++|+..|++..+.. .-+...+..+...+.+.|++++|.+
T Consensus 154 ----------~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 154 ----------RSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp ----------HHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------
T ss_pred ----------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHH
Confidence 4455555555555566666655554431 1123344455555555555555544
No 46
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.36 E-value=6.3e-08 Score=94.35 Aligned_cols=293 Identities=11% Similarity=0.010 Sum_probs=221.4
Q ss_pred hcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHhcCCCccHHHHHHHHhh
Q 036107 100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGK----SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR 175 (441)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~----~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~ 175 (441)
......++.+.|+..|...-. .| +...+..+-..|.. .+++++|.+.|++..+.+
T Consensus 51 ~g~~~~~~~~~A~~~~~~a~~---~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--------------- 109 (490)
T 2xm6_A 51 QGNETTKDLTQAMDWFRRAAE---QG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--------------- 109 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHH---TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------
T ss_pred cCCCCCcCHHHHHHHHHHHHH---CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------------
Confidence 333447889999998864332 23 67788888888888 899999999999998866
Q ss_pred cCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCH
Q 036107 176 LDTRAMSVLMDTLVK----RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCK----TRKSDYAQKAMKEMFQHGFSPDG 247 (441)
Q Consensus 176 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~ 247 (441)
+...+..|-..|.. .++.++|.+.|+..... -+...+..|-..|.. .+++++|.+.|++..+.| +.
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~ 183 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NV 183 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 77788888888888 88999999999987442 245667777788877 789999999999998864 67
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHH
Q 036107 248 VSYTCFIEHYCR----EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK----AKQIYEALKVYEKMKSDDCLTDTSF 319 (441)
Q Consensus 248 ~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~ 319 (441)
..+..+-..|.. .+++++|.+.|++..+.| +...+..+-..|.. .+++++|...|+...+.| +...
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 257 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA 257 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 888888888887 899999999999998875 56777888888876 889999999999988875 3444
Q ss_pred HHHHHHHHHh----cCcc----------------chHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107 320 YSSLIFILSK----AVRF----------------LIYNTMISSACVR-----SEEGNALKLRQKIEEDSCKPDCETHARS 374 (441)
Q Consensus 320 ~~~li~~~~~----~g~~----------------~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~l 374 (441)
+..+-..|.. .++. ..+..+-..|... ++.++|+..|++..+.| +...+..+
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 334 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANL 334 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHH
Confidence 4444444444 2322 4555566666666 78889999998887765 44556666
Q ss_pred HHHHHhcC---ChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCccHHHHHHHHHHH
Q 036107 375 LKMCCHKK---RMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEK----KSLGNAKERIDELLTH 434 (441)
Q Consensus 375 i~~~~~~g---~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~ 434 (441)
-..|...| +.++|.+ .+++..+. .+...+..|-..|.. .+++++|.+.++....
T Consensus 335 g~~y~~~g~~~~~~~A~~---~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVE---WFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHHSCCHHHHHHHHH---HHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcccHHHHHH---HHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 66666656 5556644 66665554 356777788888887 7888999888887544
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.34 E-value=2e-10 Score=100.43 Aligned_cols=199 Identities=12% Similarity=0.003 Sum_probs=155.2
Q ss_pred HHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHH
Q 036107 94 VSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVM 173 (441)
Q Consensus 94 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~ 173 (441)
.+..+...+.+.|++++|+..|+.... ....+...|..+...+...|++++|.+.+++.....+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------- 89 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIE----ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS----------- 89 (243)
T ss_dssp -----------------CCTTHHHHHT----TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-----------
Confidence 444455678889999999999864432 22236789999999999999999999999999886522
Q ss_pred hhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 036107 174 RRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCF 253 (441)
Q Consensus 174 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 253 (441)
+..++..+...+...|++++|.+.+++.....+.+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+
T Consensus 90 ---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 165 (243)
T 2q7f_A 90 ---AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQF 165 (243)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ---chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 678889999999999999999999999865556678889999999999999999999999998742 2367889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312 (441)
Q Consensus 254 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 312 (441)
...+.+.|++++|...|++..+... .+..++..+..+|.+.|++++|.+.+++..+..
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999987643 367889999999999999999999999998753
No 48
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=1e-10 Score=111.11 Aligned_cols=284 Identities=8% Similarity=-0.085 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---- 206 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---- 206 (441)
..+..+-..+...|++++|.+.|++..+..+..+.. -...+..+...+...|++++|.+.+++...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 118 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRT----------LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS 118 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhH----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 445566677889999999999999998865331100 125788888899999999999999987622
Q ss_pred -C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCCCHhhHHHHHHHHHhcCC-----------------
Q 036107 207 -C-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----G-FSPDGVSYTCFIEHYCREKD----------------- 262 (441)
Q Consensus 207 -~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~----------------- 262 (441)
+ .......+..+-..|...|++++|.+.|++..+. + ......++..+-..|...|+
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 119 MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 1 2334567888889999999999999999887653 1 11234578888889999999
Q ss_pred HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCccchH
Q 036107 263 FRKVDYTLKEMQEK----GCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL-TDTSFYSSLIFILSKAVRFLIY 336 (441)
Q Consensus 263 ~~~a~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~~ 336 (441)
+++|...+++..+. +..+ ...++..+...|...|++++|...+++..+.... .+... .. ..+
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~---------~~~ 266 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA---ER---------RAN 266 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH---HH---------HHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH---HH---------HHH
Confidence 99999999886542 2212 2457888889999999999999999987653110 11110 00 237
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC-CC-CCCHHHH
Q 036107 337 NTMISSACVRSEEGNALKLRQKIEEDSC-KP----DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK-GI-VPQESTH 409 (441)
Q Consensus 337 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p----~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~-~~-~p~~~~~ 409 (441)
..+...|...|++++|++.+++..+... .. ...++..+...+...|++++|.+.++...++... +. .....++
T Consensus 267 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 346 (411)
T 4a1s_A 267 SNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARAC 346 (411)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHH
Confidence 8888899999999999999988764211 11 1457788888999999999998866654443322 21 1124478
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107 410 KMLAEELEKKSLGNAKERIDELLTHAT 436 (441)
Q Consensus 410 ~~ll~~~~~~g~~~~a~~~~~~m~~~~ 436 (441)
..+...|.+.|++++|.+.++...+..
T Consensus 347 ~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 347 WSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 888999999999999999999876554
No 49
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=1.8e-09 Score=104.61 Aligned_cols=334 Identities=11% Similarity=-0.023 Sum_probs=209.1
Q ss_pred HHHHHHHhcCCChHHHHHHHhhhhhHhhhh-----cCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHH
Q 036107 93 KVSEILRKRYPSPDKVVEALKCFCFTWAKT-----QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLA 167 (441)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ 167 (441)
.+++.|...+...|+.++|++.|+...... .........+|+.+-.+|...|++++|...+++..+..+......
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 578888888888899999999887332211 111222467999999999999999999999998776421111000
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhc--CCHHHHHHHHHHhhhCCCCcHHHHHHHHHH---HHhcCCHHHHHHHHHHHhhCC
Q 036107 168 AMSTVMRRLDTRAMSVLMDTLVKR--NSVAHAYKVFLKFKDCISLSSQIFDVLIHG---WCKTRKSDYAQKAMKEMFQHG 242 (441)
Q Consensus 168 ~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g 242 (441)
......++..+-.++.+. +++++|.+.|++.-...+-+...+..+..+ +...++.++|++.|++..+..
T Consensus 132 ------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 132 ------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp ------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 001345666555555554 579999999998744333445555555444 445677888998888877632
Q ss_pred CCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 036107 243 FSPDGVSYTCFIEHYCR----EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318 (441)
Q Consensus 243 ~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 318 (441)
+.+..++..+...+.. .|++++|.+++++..+... .+...+..+...|.+.|++++|...+++..+.. +-+..
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 1244556555555544 4577899999998877643 367888999999999999999999999988753 22444
Q ss_pred HHHHHHHHHHhcCc-------------------------------------cchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036107 319 FYSSLIFILSKAVR-------------------------------------FLIYNTMISSACVRSEEGNALKLRQKIEE 361 (441)
Q Consensus 319 ~~~~li~~~~~~g~-------------------------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 361 (441)
++..+-..|...+. ...|..+-..|...|++++|++.|++..+
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 55544443322110 06678888999999999999999999887
Q ss_pred cCCCCCHH--HHHHHHH-HHHhcCChhhHHHHHHHHHH-----------------HHH---CCCCCCHHHHHHHHHHHHh
Q 036107 362 DSCKPDCE--THARSLK-MCCHKKRMKDGMLVLNLMRE-----------------MLS---KGIVPQESTHKMLAEELEK 418 (441)
Q Consensus 362 ~g~~p~~~--t~~~li~-~~~~~g~~~~a~~~~~~~~~-----------------m~~---~~~~p~~~~~~~ll~~~~~ 418 (441)
....|... .+..+.. .....|+.++|...++..-+ +.+ ..-+.+..+|..+-..+..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~ 442 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL 442 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 64333221 1222221 23467888888764431111 000 0123345688889999999
Q ss_pred cCCccHHHHHHHHHHHH
Q 036107 419 KSLGNAKERIDELLTHA 435 (441)
Q Consensus 419 ~g~~~~a~~~~~~m~~~ 435 (441)
.|++++|.+.++.--+.
T Consensus 443 ~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 443 NEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHCC------------
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 99999999999876544
No 50
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.31 E-value=2.3e-10 Score=104.90 Aligned_cols=285 Identities=9% Similarity=-0.110 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---- 206 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---- 206 (441)
..+...-..+...|++++|...|++..+..+..+. .-...+..+...+...|++++|.+.+++...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 75 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK----------TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 75 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Confidence 34455566778899999999999999886533110 0146788888999999999999999987521
Q ss_pred -C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HhhHHHHHHHHHhcCC-----------------
Q 036107 207 -C-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF-SPD----GVSYTCFIEHYCREKD----------------- 262 (441)
Q Consensus 207 -~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~----------------- 262 (441)
+ ......++..+...|...|++++|...+++..+..- .++ ..++..+...+...|+
T Consensus 76 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 76 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 1 122355788888999999999999999988764210 112 3478888889999999
Q ss_pred ---HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCcc
Q 036107 263 ---FRKVDYTLKEMQEK----GCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKSDDC-LTDTSFYSSLIFILSKAVRF 333 (441)
Q Consensus 263 ---~~~a~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~ 333 (441)
+++|...+++..+. +..+ ...++..+...+...|++++|...+++..+... .++... ..
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~--------- 223 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA---ER--------- 223 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH---HH---------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHH---HH---------
Confidence 99999999886442 2222 245788888899999999999999998765210 011110 00
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC-CCC-CCH
Q 036107 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSC-KPD----CETHARSLKMCCHKKRMKDGMLVLNLMREMLSK-GIV-PQE 406 (441)
Q Consensus 334 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~-~~~-p~~ 406 (441)
.++..+...|...|++++|.+.+++..+... .++ ..++..+...+...|++++|.+.++...++... +-. ...
T Consensus 224 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 303 (338)
T 3ro2_A 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 303 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 2478888889999999999999988764211 122 456778888999999999998866654443322 211 124
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107 407 STHKMLAEELEKKSLGNAKERIDELLTHATE 437 (441)
Q Consensus 407 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 437 (441)
.++..+...+.+.|++++|.+.++...+..+
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 304 RACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 4788899999999999999999998766543
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.30 E-value=6.2e-10 Score=99.19 Aligned_cols=230 Identities=9% Similarity=-0.044 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-C--
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-C-- 207 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~-- 207 (441)
..+...-..+...|++++|.+.|++..+..+. +...+..+...+...|++++|.+.++.... .
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 69 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN--------------SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA 69 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC--------------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCc
Confidence 34555667788999999999999999885532 456788888899999999999999998744 1
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036107 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTI 287 (441)
Q Consensus 208 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 287 (441)
.......|..+...+...|++++|.+.|++..+.. +.+..+|..+...+...|++++|...|++..+.. +.+...|..
T Consensus 70 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~ 147 (272)
T 3u4t_A 70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYE 147 (272)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHH
Confidence 11223448889999999999999999999998743 2355789999999999999999999999987762 335667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCC---hhHHHHHHHHHHHcC-
Q 036107 288 VMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE---EGNALKLRQKIEEDS- 363 (441)
Q Consensus 288 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g- 363 (441)
+...+...+++++|.+.|++..+... .+... +..+...+...|+ .++|...+++..+..
T Consensus 148 l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~----------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 148 LGQAYYYNKEYVKADSSFVKVLELKP-NIYIG----------------YLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHH----------------HHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc-cchHH----------------HHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 77345555699999999999987532 12322 5556666666677 788999988876432
Q ss_pred CCCC------HHHHHHHHHHHHhcCChhhHHHHHHH
Q 036107 364 CKPD------CETHARSLKMCCHKKRMKDGMLVLNL 393 (441)
Q Consensus 364 ~~p~------~~t~~~li~~~~~~g~~~~a~~~~~~ 393 (441)
-.|+ ...|..+-..|...|++++|.+.++.
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2243 25677788889999999999775443
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.30 E-value=4.5e-10 Score=106.19 Aligned_cols=287 Identities=9% Similarity=-0.115 Sum_probs=202.6
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-
Q 036107 128 HTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD- 206 (441)
Q Consensus 128 p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~- 206 (441)
+....+...-..+...|++++|...|++..+..+..+.. -..++..+...+...|++++|...+++...
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 76 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT----------LSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 76 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHH----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 356667777788889999999999999988865332100 135777888899999999999999987521
Q ss_pred ----CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HhhHHHHHHHHHhcCC--------------
Q 036107 207 ----CI-SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF-SPD----GVSYTCFIEHYCREKD-------------- 262 (441)
Q Consensus 207 ----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~-------------- 262 (441)
+. +....++..+...|...|++++|...+++..+..- .++ ..++..+-..+...|+
T Consensus 77 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 156 (406)
T 3sf4_A 77 ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFP 156 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCC
T ss_pred HHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhh
Confidence 11 22355677888889999999999999888765210 011 4478888888999999
Q ss_pred ------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhc
Q 036107 263 ------FRKVDYTLKEMQEK----GCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKSDDC-LTDTSFYSSLIFILSKA 330 (441)
Q Consensus 263 ------~~~a~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~ 330 (441)
+++|...+++..+. +..| ...++..+...|...|++++|...+++..+... .++.... .
T Consensus 157 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~------ 227 (406)
T 3sf4_A 157 EEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE---R------ 227 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHH---H------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHH---H------
Confidence 99999998876442 2122 245678888889999999999999988765210 1121100 0
Q ss_pred CccchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC-CCCC
Q 036107 331 VRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC-KPD----CETHARSLKMCCHKKRMKDGMLVLNLMREMLSK-GIVP 404 (441)
Q Consensus 331 g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~-~~~p 404 (441)
.+|..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|.+.++...++... +-.+
T Consensus 228 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 304 (406)
T 3sf4_A 228 ---RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI 304 (406)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcH
Confidence 2377888889999999999999988753210 112 456778888899999999998866644443322 2111
Q ss_pred -CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107 405 -QESTHKMLAEELEKKSLGNAKERIDELLTHAT 436 (441)
Q Consensus 405 -~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 436 (441)
...++..+...+.+.|++++|.+.++...+..
T Consensus 305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 14578888888999999999999988865543
No 53
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.30 E-value=2.4e-09 Score=105.53 Aligned_cols=372 Identities=9% Similarity=0.041 Sum_probs=210.4
Q ss_pred ccchhcccccCccchhccCCCCCC-CCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHh-cCCChHHH
Q 036107 31 NRHCITNELTGLPSWLKFFDTQSP-DEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRK-RYPSPDKV 108 (441)
Q Consensus 31 ~~~~~~~~a~~l~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~ 108 (441)
+.|++. +|..+++..-. ..| +...+...+..+.+.++.+.+..++..+++... +++ +....+. .....|+.
T Consensus 24 ~~~~~~-~a~~~~e~al~---~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p--~~~-lw~~~~~~~~~~~~~~ 96 (530)
T 2ooe_A 24 QNQPID-KARKTYERLVA---QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL--HID-LWKCYLSYVRETKGKL 96 (530)
T ss_dssp HSSCHH-HHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC--CHH-HHHHHHHHHHHHTTTS
T ss_pred HhCCHH-HHHHHHHHHHH---HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--ChH-HHHHHHHHHHHHccch
Confidence 345565 66666652222 223 334566677777778889999999998888763 332 2222221 11111222
Q ss_pred HH----HHhhhhhHhhhhcCCCCC-CHHHHHHHHHHHHc---------CCChhHHHHHHHHHHHhcCCCccHHHHH---H
Q 036107 109 VE----ALKCFCFTWAKTQTGYMH-TPETYNAMVEALGK---------SKKFGLMWELVKEIDELSNGYVSLAAMS---T 171 (441)
Q Consensus 109 ~~----A~~~~~~~~~~~~~g~~p-~~~~y~~li~~~~~---------~~~~~~a~~l~~~m~~~~~~~~~~~~~~---~ 171 (441)
+. +.++|+.... ..|..| +...|...+....+ .|+++.|..+|++....+ .......+. .
T Consensus 97 ~~a~~~~~~~~~~al~--~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P-~~~~~~~~~~~~~ 173 (530)
T 2ooe_A 97 PSYKEKMAQAYDFALD--KIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP-MINIEQLWRDYNK 173 (530)
T ss_dssp TTHHHHHHHHHHHHHH--HTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC-CTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch-hhhHHHHHHHHHH
Confidence 22 3335542221 234443 46678777776554 578888888888877632 221111111 0
Q ss_pred HHhhcC--------------------------------------------------HHHHHHHHHHHHhc----CCH---
Q 036107 172 VMRRLD--------------------------------------------------TRAMSVLMDTLVKR----NSV--- 194 (441)
Q Consensus 172 ~~~~~~--------------------------------------------------~~~~~~li~~~~~~----g~~--- 194 (441)
.....+ ...|...+...... ++.
T Consensus 174 ~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~ 253 (530)
T 2ooe_A 174 YEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLI 253 (530)
T ss_dssp HHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHH
T ss_pred HHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhH
Confidence 000000 01222222111111 111
Q ss_pred -HHHHHHHHHhhhCCCCcHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 036107 195 -AHAYKVFLKFKDCISLSSQIFDVLIHGWCK-------TRKSD-------YAQKAMKEMFQHGFSPDGVSYTCFIEHYCR 259 (441)
Q Consensus 195 -~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 259 (441)
+++..+|++.-...+-+...|..+...+.+ .|+++ +|..+|++..+.-.+-+...|..+...+.+
T Consensus 254 ~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 254 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 234444544422223345555555555554 46655 667777766642122245666666666677
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCccchH
Q 036107 260 EKDFRKVDYTLKEMQEKGCKPS--VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD-TSFYSSLIFILSKAVRFLIY 336 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~~ 336 (441)
.|++++|..+|++..+. .|+ ...|...+..+.+.|++++|.++|+...+.. |+ ... |
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~----------------~ 393 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHV----------------Y 393 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHH----------------H
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHH----------------H
Confidence 77777777777776663 332 2356666666666777777777777766542 21 111 1
Q ss_pred HH-HHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC-CCCC--HHHHHH
Q 036107 337 NT-MISSACVRSEEGNALKLRQKIEEDSCKP-DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKG-IVPQ--ESTHKM 411 (441)
Q Consensus 337 ~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~-~~p~--~~~~~~ 411 (441)
.. ....+...|+.++|..+|++..+. .| +...|..++..+.+.|+.++|.. ++++....+ ..|+ ...|..
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~---~~~~al~~~~~~~~~~~~lw~~ 468 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRV---LFERVLTSGSLPPEKSGEIWAR 468 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHH---HHHHHHHSCCSCGGGCHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHH---HHHHHHhccCCCHHHHHHHHHH
Confidence 11 111234689999999999988764 34 46788888888999999999988 455554442 3332 457888
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107 412 LAEELEKKSLGNAKERIDELLTHATE 437 (441)
Q Consensus 412 ll~~~~~~g~~~~a~~~~~~m~~~~~ 437 (441)
.++...+.|+.+.+.++.+.+.+...
T Consensus 469 ~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 469 FLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 88888899999999999988766543
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.27 E-value=2.6e-09 Score=100.20 Aligned_cols=249 Identities=8% Similarity=-0.000 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhCC
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNS-VAHAYKVFLKFKDCI 208 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~ 208 (441)
...|+.+-..+.+.|++++|++.+++..+..+. +..+|+.+-..+.+.|+ +++|+..|++.-...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~--------------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA--------------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc--------------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC
Confidence 457888888999999999999999999986633 67899999999999997 999999999986555
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 288 (441)
+-+...|+.+-.++.+.|++++|+..|++..+.. +-+...|..+-.++.+.|++++|+..|+++.+.... +...|+.+
T Consensus 163 P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~l 240 (382)
T 2h6f_A 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQR 240 (382)
T ss_dssp TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 6688899999999999999999999999999753 236788999999999999999999999999987543 78899999
Q ss_pred HHHHHh-cCCHHHH-----HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcC--ChhHHHHHHHHHH
Q 036107 289 MHALEK-AKQIYEA-----LKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRS--EEGNALKLRQKIE 360 (441)
Q Consensus 289 l~~~~~-~~~~~~a-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g--~~~~a~~~~~~m~ 360 (441)
..++.+ .|..++| ...|++..+. .|+.. ..|+.+...+...| +.++|++.+.++
T Consensus 241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~---------------~a~~~l~~ll~~~g~~~~~~a~~~~~~~- 302 (382)
T 2h6f_A 241 YFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNE---------------SAWNYLKGILQDRGLSKYPNLLNQLLDL- 302 (382)
T ss_dssp HHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCH---------------HHHHHHHHHHTTTCGGGCHHHHHHHHHH-
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCH---------------HHHHHHHHHHHccCccchHHHHHHHHHh-
Confidence 999999 6665777 4788887774 33322 22777777777777 688999999887
Q ss_pred HcCCCCCHHHHHHHHHHHHhcC---------ChhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 036107 361 EDSCKPDCETHARSLKMCCHKK---------RMKDGMLVLNLMREMLSKGIVPQE-STHKMLAEELE 417 (441)
Q Consensus 361 ~~g~~p~~~t~~~li~~~~~~g---------~~~~a~~~~~~~~~m~~~~~~p~~-~~~~~ll~~~~ 417 (441)
+ .-..+...+..+...|.+.| ..++|.+ +++++. ..+.|.. ..|..+...+.
T Consensus 303 ~-~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~---~~~~l~-~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 303 Q-PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE---LCEILA-KEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp T-TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH---HHHHHH-HTTCGGGHHHHHHHHHHHH
T ss_pred c-cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHH---HHHHHH-HHhCchhHHHHHHHHHHHH
Confidence 2 22345567888888888874 2466655 555541 1244543 35555555554
No 55
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=1.8e-10 Score=104.59 Aligned_cols=246 Identities=11% Similarity=0.001 Sum_probs=158.8
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCc--cHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV--SLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD 206 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 206 (441)
+..+|..+...+...|++++|.++++++.+...... . ......++..+...+...|++++|...+++...
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD--------HPDVATMLNILALVYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS--------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999999887410000 0 011457788899999999999999999988632
Q ss_pred -------C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHH
Q 036107 207 -------C-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH------GFSP-DGVSYTCFIEHYCREKDFRKVDYTLK 271 (441)
Q Consensus 207 -------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~ 271 (441)
. .+....++..+...|...|++++|.+.|++..+. +-.| ....+..+...+...|++++|.+.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 2345667888999999999999999999998763 2222 34678888899999999999999999
Q ss_pred HHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhcCccchHH
Q 036107 272 EMQEK------GCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKSD-------DCLTDTSFYSSLIFILSKAVRFLIYN 337 (441)
Q Consensus 272 ~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~~~ 337 (441)
+..+. +..| ...++..+...|.+.|++++|...++++.+. ...+........... +.
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 248 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEE---------RE 248 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHH---------HH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH---------HH
Confidence 98764 2233 3467888999999999999999999998763 122222111111111 22
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 036107 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLN 392 (441)
Q Consensus 338 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 392 (441)
.+...+...+.+.++...++...... ..+..++..+...|.+.|++++|.++++
T Consensus 249 ~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 249 ECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEE 302 (311)
T ss_dssp HC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 23333344444555555554443211 1223345556666666666666655443
No 56
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=1e-10 Score=106.34 Aligned_cols=242 Identities=10% Similarity=0.012 Sum_probs=169.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------C
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--------CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH------G 242 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g 242 (441)
+..++..+...+...|++++|..+|++... ..+.....+..+...|...|++++|...|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 467888899999999999999999988733 23445667888999999999999999999988753 1
Q ss_pred C-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---
Q 036107 243 F-SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK------GCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKSD--- 311 (441)
Q Consensus 243 ~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--- 311 (441)
- .....++..+...+...|++++|...+++..+. +..| ....+..+...+...|++++|.++|++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 234567888999999999999999999998764 2223 3567888899999999999999999998764
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCHHHH-------HHH
Q 036107 312 ---DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED-------SCKPDCETH-------ARS 374 (441)
Q Consensus 312 ---g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~t~-------~~l 374 (441)
+..|... .++..+...|...|++++|.+.+++..+. ...+..... ..+
T Consensus 186 ~~~~~~~~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (311)
T 3nf1_A 186 KLGPDDPNVA---------------KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREEC 250 (311)
T ss_dssp TSCTTCHHHH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC
T ss_pred HhCCCCHHHH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh
Confidence 2222221 34788889999999999999999998753 122222222 222
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107 375 LKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHATE 437 (441)
Q Consensus 375 i~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 437 (441)
...+...+.+.++.. .+..... ....+..++..+...|.+.|++++|.+.++...+..+
T Consensus 251 ~~~~~~~~~~~~a~~---~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 251 KGKQKDGTSFGEYGG---WYKACKV-DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp -------CCSCCCC-------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCchhhHHHHHHHHH---HHhhcCC-CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 223333444555433 2222211 1223455888999999999999999999998766543
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.26 E-value=1.8e-09 Score=90.16 Aligned_cols=167 Identities=13% Similarity=0.029 Sum_probs=146.0
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 208 (441)
+...|..+-..+.+.|++++|++.|++..+..|. +..++..+...+.+.|++++|...+.......
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~ 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN--------------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD 69 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 6778999999999999999999999999886533 77889999999999999999999999986655
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 288 (441)
+.+...+..+...+...++++.|.+.+.+..... +-+...+..+-..+.+.|++++|++.|++..+... -+..+|..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l 147 (184)
T 3vtx_A 70 TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSI 147 (184)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHH
Confidence 6677788888889999999999999999988642 23567888899999999999999999999988643 367889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC
Q 036107 289 MHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
-.+|.+.|++++|.+.|++..+.
T Consensus 148 g~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 148 GLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhC
Confidence 99999999999999999998875
No 58
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.23 E-value=1.5e-08 Score=99.76 Aligned_cols=339 Identities=7% Similarity=-0.031 Sum_probs=201.2
Q ss_pred CcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHH
Q 036107 56 EDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNA 135 (441)
Q Consensus 56 ~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~ 135 (441)
...+..++.. .+.++.+.+..+++.+.+.- |+...+...++..+.+.|+++.|..+|+..- ...|+...|..
T Consensus 13 ~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral-----~~~p~~~lw~~ 84 (530)
T 2ooe_A 13 LDAWSILIRE-AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCL-----MKVLHIDLWKC 84 (530)
T ss_dssp HHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-----TTCCCHHHHHH
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hcCCChHHHHH
Confidence 3455555553 56788999999999988754 3333566677777777899999999995332 33478888888
Q ss_pred HHHHH-HcCCChhHHHH----HHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHh---------cCCHHHHHHHH
Q 036107 136 MVEAL-GKSKKFGLMWE----LVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK---------RNSVAHAYKVF 201 (441)
Q Consensus 136 li~~~-~~~~~~~~a~~----l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~ 201 (441)
.+... ...|+.+.|.+ +|+.....-+..+. +...|...+....+ .|+++.|..+|
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~-----------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM-----------SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT-----------CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcc-----------cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 77533 45677777765 66665543111111 33444444444333 45666666666
Q ss_pred HHhhhC----------------------------------------------------------CCCc--------HHHH
Q 036107 202 LKFKDC----------------------------------------------------------ISLS--------SQIF 215 (441)
Q Consensus 202 ~~~~~~----------------------------------------------------------~~~~--------~~~~ 215 (441)
++.-.. ++|+ ...|
T Consensus 154 ~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w 233 (530)
T 2ooe_A 154 QRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMW 233 (530)
T ss_dssp HHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHH
Confidence 554321 1111 1122
Q ss_pred HHHHHHHHhc----CCH----HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-------cCCHH-------HHHHHHHHH
Q 036107 216 DVLIHGWCKT----RKS----DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR-------EKDFR-------KVDYTLKEM 273 (441)
Q Consensus 216 ~~li~~~~~~----~~~----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~a~~l~~~m 273 (441)
...+...... ++. +.+..+|++.... .+-+...|......+.+ .|+++ +|..+|++.
T Consensus 234 ~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 234 KKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 2222111110 111 1334444444432 11234455555555553 56665 677777776
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHH
Q 036107 274 QEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNAL 353 (441)
Q Consensus 274 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~ 353 (441)
.+.-.+-+...|..+...+.+.|++++|..+|+.+.+. .|+..+ ..|...+..+.+.|++++|.
T Consensus 313 l~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~--------------~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 313 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPT--------------LVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp TTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCch--------------HHHHHHHHHHHHhcCHHHHH
Confidence 65222334667777777777777777777777777764 332111 13777777788888899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 036107 354 KLRQKIEEDSCKPDCETHARSLK-MCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELL 432 (441)
Q Consensus 354 ~~~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 432 (441)
++|++..+.. ..+...|..... .+...|+.++|..+++..-+. .+-+...|..++..+.+.|+.++|..+++..
T Consensus 377 ~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~----~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 377 MIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 9999987642 112233322222 233689999998865543331 1235778999999999999999999999987
Q ss_pred HHH
Q 036107 433 THA 435 (441)
Q Consensus 433 ~~~ 435 (441)
...
T Consensus 452 l~~ 454 (530)
T 2ooe_A 452 LTS 454 (530)
T ss_dssp HHS
T ss_pred Hhc
Confidence 654
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.23 E-value=2e-08 Score=91.49 Aligned_cols=230 Identities=9% Similarity=0.015 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHcC----CCh----hHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHH-------hcCCH-
Q 036107 131 ETYNAMVEALGKS----KKF----GLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLV-------KRNSV- 194 (441)
Q Consensus 131 ~~y~~li~~~~~~----~~~----~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~- 194 (441)
..|...+...-+. ++. ++|..+|++.....+. ++..|..+...+. +.|++
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~--------------~~~~w~~~~~~~~~~~~~l~~~g~~~ 74 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH--------------HPDIWYEAAQYLEQSSKLLAEKGDMN 74 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTT--------------CHHHHHHHHHHHHHHHHHHHHTSCCH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCC--------------CHHHHHHHHHHHHHhchhhhhccchh
Confidence 4555555554443 233 6788899998885433 6677777777665 45885
Q ss_pred ------HHHHHHHHHhhhCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-h-hHHHHHHHHHhcCCHHH
Q 036107 195 ------AHAYKVFLKFKDCI-SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG-V-SYTCFIEHYCREKDFRK 265 (441)
Q Consensus 195 ------~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~-~~~~li~~~~~~g~~~~ 265 (441)
++|..+|++.-..+ +-+...|..+...+.+.|++++|.++|++..+ +.|+. . .|..+...+.+.|++++
T Consensus 75 ~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~ 152 (308)
T 2ond_A 75 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHH
T ss_pred hcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHH
Confidence 89999999886643 44666899999999999999999999999998 45543 3 79999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHH
Q 036107 266 VDYTLKEMQEKGCKPSVITCTIVMHALE-KAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC 344 (441)
Q Consensus 266 a~~l~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~ 344 (441)
|..+|++..+... ++...|........ ..|++++|..+|+...+.. +-+.. .|..++..+.
T Consensus 153 A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~----------------~~~~~~~~~~ 214 (308)
T 2ond_A 153 GRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPE----------------YVLAYIDYLS 214 (308)
T ss_dssp HHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHH----------------HHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH----------------HHHHHHHHHH
Confidence 9999999988643 34455554433322 3699999999999987742 11232 3888888899
Q ss_pred hcCChhHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 036107 345 VRSEEGNALKLRQKIEEDS-CKP--DCETHARSLKMCCHKKRMKDGMLVLNLM 394 (441)
Q Consensus 345 ~~g~~~~a~~~~~~m~~~g-~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~~ 394 (441)
+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..+++..
T Consensus 215 ~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 215 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp TTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999998863 455 3567888888888999999997754433
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.21 E-value=3.4e-09 Score=99.42 Aligned_cols=230 Identities=8% Similarity=-0.002 Sum_probs=183.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRK-SDYAQKAMKEMFQHGFSPDGVSYTCFIE 255 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~ 255 (441)
+...|..+-..+.+.|++++|++.|++.-...+-+...|+.+-..+.+.|+ +++|+..|++..+..- -+...|+.+-.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 456777888889999999999999999855556678889999999999997 9999999999988532 26788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccch
Q 036107 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335 (441)
Q Consensus 256 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (441)
++...|++++|+..|++..+..-. +...|..+-.++.+.|++++|...|+++.+.... +...
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a---------------- 236 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSV---------------- 236 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHH----------------
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHH----------------
Confidence 999999999999999999887543 7889999999999999999999999999986422 3333
Q ss_pred HHHHHHHHHh-cCChhHH-----HHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC--ChhhHHHHHHHHHHHHHCCCCCCH
Q 036107 336 YNTMISSACV-RSEEGNA-----LKLRQKIEEDSCKPD-CETHARSLKMCCHKK--RMKDGMLVLNLMREMLSKGIVPQE 406 (441)
Q Consensus 336 ~~~li~~~~~-~g~~~~a-----~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g--~~~~a~~~~~~~~~m~~~~~~p~~ 406 (441)
|+.+-..+.. .|..++| ++.|++..+. .|+ ...|..+...+...| ++++|.+ .+.++ ..-..+.
T Consensus 237 ~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~---~~~~~--~~~p~~~ 309 (382)
T 2h6f_A 237 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLN---QLLDL--QPSHSSP 309 (382)
T ss_dssp HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHH---HHHHH--TTTCCCH
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHH---HHHHh--ccCCCCH
Confidence 7777777777 5665777 4778887754 454 457777777788877 5777755 55554 3334466
Q ss_pred HHHHHHHHHHHhcC---------CccHHHHHHHHH
Q 036107 407 STHKMLAEELEKKS---------LGNAKERIDELL 432 (441)
Q Consensus 407 ~~~~~ll~~~~~~g---------~~~~a~~~~~~m 432 (441)
..+..+...|.+.| ..++|.++++.+
T Consensus 310 ~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 310 YLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 78889999998864 258899999887
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.20 E-value=1.6e-10 Score=109.35 Aligned_cols=303 Identities=12% Similarity=-0.024 Sum_probs=210.3
Q ss_pred HHhcCCChHHHHHHHhhhhhHhhhhcCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhh
Q 036107 98 LRKRYPSPDKVVEALKCFCFTWAKTQTGYMHT--PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR 175 (441)
Q Consensus 98 l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~--~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~ 175 (441)
....+.+.|++++|+..|+..... .++ .|. ..+|..+...+...|++++|.+.+++........... .
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~-~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~ 84 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQV-GTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ--------L 84 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------H
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc-Ccc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc--------H
Confidence 445566678888888888644433 111 111 3578888899999999999999999876542111100 0
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----C-CCCcHHHHHHHHHHHHhcCC--------------------HH
Q 036107 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-----C-ISLSSQIFDVLIHGWCKTRK--------------------SD 229 (441)
Q Consensus 176 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~~~--------------------~~ 229 (441)
....++..+...+...|++++|...+++... + ......++..+-..|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 1356788888999999999999999987622 1 11124478888889999999 99
Q ss_pred HHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHH
Q 036107 230 YAQKAMKEMFQH----GFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GCKP-SVITCTIVMHALEKAKQIY 299 (441)
Q Consensus 230 ~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~ 299 (441)
+|.+.+++.... +-.| ...++..+...+...|++++|...+++..+. +..+ ...++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998876542 2112 2357888889999999999999999987653 1111 1347888899999999999
Q ss_pred HHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHH
Q 036107 300 EALKVYEKMKSDDC-LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC-KPD----CETHAR 373 (441)
Q Consensus 300 ~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~ 373 (441)
+|...+++..+... ..+... .. .++..+...|...|++++|.+.+++..+..- .++ ..++..
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~---~~---------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 312 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAV---EA---------QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWS 312 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHH---HH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchH---HH---------HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999998764211 011110 00 3477888899999999999999998764211 122 457778
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCc
Q 036107 374 SLKMCCHKKRMKDGMLVLNLMREMLSK-GIVP-QESTHKMLAEELEKKSLG 422 (441)
Q Consensus 374 li~~~~~~g~~~~a~~~~~~~~~m~~~-~~~p-~~~~~~~ll~~~~~~g~~ 422 (441)
+...|...|++++|.+.++...++... +-.+ ...++..+...+...|+.
T Consensus 313 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 313 LGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 888999999999998876655544332 3222 244777778888777765
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.19 E-value=3e-10 Score=107.88 Aligned_cols=272 Identities=9% Similarity=-0.051 Sum_probs=196.4
Q ss_pred HHHhcCCChHHHHHHHhhhhhHhhhhcCCCCC-CH----HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHH
Q 036107 97 ILRKRYPSPDKVVEALKCFCFTWAKTQTGYMH-TP----ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMST 171 (441)
Q Consensus 97 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p-~~----~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~ 171 (441)
.+...+...|++++|+..|+..... .| +. ..|..+-..+...|++++|.+.+++...........
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----- 122 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR----- 122 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc-----
Confidence 3446677789999999999755443 12 23 578888999999999999999999887642111100
Q ss_pred HHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----C-CCCcHHHHHHHHHHHHhcCC-----------------H
Q 036107 172 VMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-----C-ISLSSQIFDVLIHGWCKTRK-----------------S 228 (441)
Q Consensus 172 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~~~-----------------~ 228 (441)
.....++..+-..+...|++++|...+++... + ......++..+...|...|+ +
T Consensus 123 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~ 199 (411)
T 4a1s_A 123 ---LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL 199 (411)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHH
Confidence 11457788889999999999999999987622 1 22345578888899999999 9
Q ss_pred HHHHHHHHHHhhC----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCH
Q 036107 229 DYAQKAMKEMFQH----GF-SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC-KPS----VITCTIVMHALEKAKQI 298 (441)
Q Consensus 229 ~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~ 298 (441)
++|.+.+++..+. +- .....++..+...+...|++++|...+++..+... .++ ..++..+...|...|++
T Consensus 200 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (411)
T 4a1s_A 200 TRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQF 279 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCH
Confidence 9999998886542 11 11235788888999999999999999998765311 012 34788889999999999
Q ss_pred HHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHHHH
Q 036107 299 YEALKVYEKMKSDDCL-TDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED----SCK-PDCETHA 372 (441)
Q Consensus 299 ~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~t~~ 372 (441)
++|...+++..+.... .+... .. .++..+...|...|++++|...+++..+. +-. ....++.
T Consensus 280 ~~A~~~~~~al~~~~~~~~~~~---~~---------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 347 (411)
T 4a1s_A 280 EDAAEHYKRTLALAVELGEREV---EA---------QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACW 347 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHH---HH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHH---HH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999987653110 11110 00 33778888899999999999999987642 111 1134777
Q ss_pred HHHHHHHhcCChhhHHHHHHH
Q 036107 373 RSLKMCCHKKRMKDGMLVLNL 393 (441)
Q Consensus 373 ~li~~~~~~g~~~~a~~~~~~ 393 (441)
.+...|...|++++|.+.++.
T Consensus 348 ~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 348 SLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHH
Confidence 888899999999999886553
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.18 E-value=5.5e-08 Score=88.59 Aligned_cols=219 Identities=10% Similarity=0.038 Sum_probs=169.2
Q ss_pred HHHHHHHHHhhhCCCCcHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHh
Q 036107 195 AHAYKVFLKFKDCISLSSQIFDVLIHGWC-------KTRKS-------DYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCR 259 (441)
Q Consensus 195 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~ 259 (441)
++|..+|++.-...+-+...|..+...+. +.|++ ++|..+|++..+. +.| +...|..+...+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 68888998875545667778888887775 35886 8999999999873 234 45689999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHH
Q 036107 260 EKDFRKVDYTLKEMQEKGCKPS-VI-TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~g~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~ 337 (441)
.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.+. .+... |.
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~----------------~~ 172 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHV----------------YV 172 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHH----------------HH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHH----------------HH
Confidence 99999999999999884 443 33 899999999999999999999999988642 22222 33
Q ss_pred HHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC-CCCC--CHHHHHHHH
Q 036107 338 TMISS-ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSK-GIVP--QESTHKMLA 413 (441)
Q Consensus 338 ~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~-~~~p--~~~~~~~ll 413 (441)
..... +...|+.++|.++|++..+.. .-+...|..++..+.+.|++++|.. ++++.... .+.| ....|..++
T Consensus 173 ~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~---~~~~al~~~~l~p~~~~~l~~~~~ 248 (308)
T 2ond_A 173 TAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRV---LFERVLTSGSLPPEKSGEIWARFL 248 (308)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHH---HHHHHHhccCCCHHHHHHHHHHHH
Confidence 22222 223699999999999987642 2256778888999999999999977 56666655 3455 466899999
Q ss_pred HHHHhcCCccHHHHHHHHHHHHhh
Q 036107 414 EELEKKSLGNAKERIDELLTHATE 437 (441)
Q Consensus 414 ~~~~~~g~~~~a~~~~~~m~~~~~ 437 (441)
..+.+.|+.+.|..+++...+...
T Consensus 249 ~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 249 AFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcc
Confidence 999999999999999998776543
No 64
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=3.5e-09 Score=87.98 Aligned_cols=166 Identities=12% Similarity=0.007 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 209 (441)
...|..+...+...|++++|.+.++++....+. +..++..+...+...|++++|.+.++......+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 73 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF--------------DVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc--------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 356777888889999999999999988764321 678888999999999999999999998855455
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVM 289 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 289 (441)
.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 74 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 151 (186)
T 3as5_A 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIA 151 (186)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHH
Confidence 677889999999999999999999999988752 3467788889999999999999999999988764 34678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhC
Q 036107 290 HALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 290 ~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
..+...|++++|...++...+.
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 152 FSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988763
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.14 E-value=1.4e-08 Score=84.70 Aligned_cols=167 Identities=11% Similarity=0.006 Sum_probs=129.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 256 (441)
++.+|..+-..+.+.|++++|++.|++.-+..+-+...+..+...|.+.|++++|...+....... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567888888889999999999999988744445577788888888899999999999888887643 2345667777778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchH
Q 036107 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~ 336 (441)
+...++++.+...+.+..+... -+...+..+-..+.+.|++++|.+.|++..+.. +.+.. .|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~----------------~~ 144 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIR----------------AY 144 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH----------------HH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhh----------------HH
Confidence 8888889999998888876533 367778888888888999999999988887753 11232 37
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHc
Q 036107 337 NTMISSACVRSEEGNALKLRQKIEED 362 (441)
Q Consensus 337 ~~li~~~~~~g~~~~a~~~~~~m~~~ 362 (441)
..+-..|.+.|++++|++.|++..+.
T Consensus 145 ~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 145 QSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 77778888888889998888887653
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.13 E-value=5.6e-10 Score=102.26 Aligned_cols=273 Identities=12% Similarity=-0.021 Sum_probs=191.8
Q ss_pred HhcCCChHHHHHHHhhhhhHhhhhcCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhc
Q 036107 99 RKRYPSPDKVVEALKCFCFTWAKTQTGYMHT--PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176 (441)
Q Consensus 99 ~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~--~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~ 176 (441)
...+...|++++|+..|+..... .++ .|. ...|..+...+...|++++|.+.+++........... ..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~-~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~ 81 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQV-GTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ--------LG 81 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--------HH
T ss_pred HHHHHHhccHHHHHHHHHHHHhh-Ccc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccccc--------HH
Confidence 34556678899999988754443 111 111 4678899999999999999999999876542111100 01
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CC---CCcHHHHHHHHHHHHhcCC--------------------HHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CI---SLSSQIFDVLIHGWCKTRK--------------------SDY 230 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~---~~~~~~~~~li~~~~~~~~--------------------~~~ 230 (441)
...++..+...+...|++++|.+.+++... .. .....++..+...|...|+ +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 356788888999999999999999988622 11 1124478888889999999 999
Q ss_pred HHHHHHHHhhC----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHH
Q 036107 231 AQKAMKEMFQH----GFS-PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GCK-PSVITCTIVMHALEKAKQIYE 300 (441)
Q Consensus 231 a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~-p~~~~~~~ll~~~~~~~~~~~ 300 (441)
|.+.+++.... +-. ....++..+...+...|++++|...+++..+. +.. ....++..+...+...|++++
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 99998876532 111 12457888888999999999999999987643 111 123478888899999999999
Q ss_pred HHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHHHHHH
Q 036107 301 ALKVYEKMKSDDC-LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED----SCK-PDCETHARS 374 (441)
Q Consensus 301 a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~t~~~l 374 (441)
|...+++..+... ..+... .. .++..+...|...|++++|...+++..+. +-. ....++..+
T Consensus 242 A~~~~~~al~~~~~~~~~~~---~~---------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 309 (338)
T 3ro2_A 242 ASEYYKKTLLLARQLKDRAV---EA---------QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 309 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHH---HH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchhH---HH---------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 9999998764211 111110 00 33777888899999999999999887642 111 113467788
Q ss_pred HHHHHhcCChhhHHHHHHH
Q 036107 375 LKMCCHKKRMKDGMLVLNL 393 (441)
Q Consensus 375 i~~~~~~g~~~~a~~~~~~ 393 (441)
...+.+.|++++|.+.++.
T Consensus 310 a~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 310 GNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHH
Confidence 8899999999999775443
No 67
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.12 E-value=1.6e-08 Score=83.88 Aligned_cols=166 Identities=12% Similarity=0.009 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY 257 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 257 (441)
...+..+...+...|++++|.+.++.+....+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45677778889999999999999999866556678889999999999999999999999998752 34678888999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHH
Q 036107 258 CREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337 (441)
Q Consensus 258 ~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~ 337 (441)
...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+.. .+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~----------------~~~ 148 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGK----------------VHR 148 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH----------------HHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchH----------------HHH
Confidence 99999999999999998764 3477889999999999999999999999988754 22332 378
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc
Q 036107 338 TMISSACVRSEEGNALKLRQKIEED 362 (441)
Q Consensus 338 ~li~~~~~~g~~~~a~~~~~~m~~~ 362 (441)
.+...+...|++++|.+.+++..+.
T Consensus 149 ~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 149 AIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 8888899999999999999987653
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.11 E-value=5.9e-09 Score=101.12 Aligned_cols=210 Identities=12% Similarity=0.017 Sum_probs=171.0
Q ss_pred hhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhCCCCcHHHHHHHHHHHHh
Q 036107 146 FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSV-AHAYKVFLKFKDCISLSSQIFDVLIHGWCK 224 (441)
Q Consensus 146 ~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 224 (441)
++++.+.+++..... + .+...+..+-..+...|++ ++|++.|++.-...+.+...|..+-..|.+
T Consensus 84 ~~~al~~l~~~~~~~---~-----------~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 149 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA---Q-----------VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK 149 (474)
T ss_dssp HHHHHHHHHHHHTTC---C-----------CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC---c-----------hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 566666777655533 1 1678888999999999999 999999998855445568889999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 036107 225 TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE---------KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA 295 (441)
Q Consensus 225 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 295 (441)
.|++++|.+.|++..+. .|+...+..+-..+... |++++|.+.|++..+... -+...|..+..+|...
T Consensus 150 ~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~ 226 (474)
T 4abn_A 150 KGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSL 226 (474)
T ss_dssp HTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHH
Confidence 99999999999999885 47788899999999999 999999999999988643 3688899999999998
Q ss_pred --------CCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 036107 296 --------KQIYEALKVYEKMKSDDCL--TDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCK 365 (441)
Q Consensus 296 --------~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 365 (441)
|++++|...|++..+..-. -+.. .|..+-..|...|++++|++.|++..+.. .
T Consensus 227 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 289 (474)
T 4abn_A 227 YFNTGQNPKISQQALSAYAQAEKVDRKASSNPD----------------LHLNRATLHKYEESYGEALEGFSQAAALD-P 289 (474)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhccccchHHHHHHHHHHHHHhCCCcccCHH----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 9999999999999885310 1333 38888889999999999999999987653 2
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHH
Q 036107 366 PDCETHARSLKMCCHKKRMKDGML 389 (441)
Q Consensus 366 p~~~t~~~li~~~~~~g~~~~a~~ 389 (441)
-+...+..+...+...|++++|.+
T Consensus 290 ~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 290 AWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 244567778888888888888754
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.09 E-value=8.1e-09 Score=97.19 Aligned_cols=236 Identities=7% Similarity=-0.034 Sum_probs=169.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh---CCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C--CCCCHhhHH
Q 036107 184 LMDTLVKRNSVAHAYKVFLKFKD---CISL---SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----G--FSPDGVSYT 251 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~~~~~~---~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g--~~p~~~~~~ 251 (441)
.-..+...|++++|.+.|++... .... ...++..+-..|...|++++|...+++..+. + ......+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55567789999999999988732 1221 3467888889999999999999999887642 1 111245788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCCHHHHHH
Q 036107 252 CFIEHYCREKDFRKVDYTLKEMQEK----GCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKSD----DCLTDTSFYSS 322 (441)
Q Consensus 252 ~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~ 322 (441)
.+-..|...|++++|...|++..+. +-.+ ...++..+-..|...|++++|.+.|++..+. +..|+..
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---- 264 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP---- 264 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH----
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH----
Confidence 8889999999999999999987643 2111 1357888999999999999999999988762 3223332
Q ss_pred HHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 036107 323 LIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED----SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML 398 (441)
Q Consensus 323 li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~ 398 (441)
.++..+...|.+.|++++|.+.+++..+. +-......+..+-..+...|+.+...+.+..+++
T Consensus 265 -----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~-- 331 (383)
T 3ulq_A 265 -----------QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES-- 331 (383)
T ss_dssp -----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH--
T ss_pred -----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--
Confidence 34888888999999999999999887542 1111122355666677788884333333445555
Q ss_pred HCCCCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107 399 SKGIVPQ-ESTHKMLAEELEKKSLGNAKERIDELLTHATE 437 (441)
Q Consensus 399 ~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 437 (441)
.+..|+ ...+..+...|.+.|++++|.+.++......+
T Consensus 332 -~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 332 -KMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred -CcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 233333 34777888999999999999999998776554
No 70
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.08 E-value=1e-07 Score=89.18 Aligned_cols=284 Identities=8% Similarity=-0.072 Sum_probs=191.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCC
Q 036107 134 NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD----CIS 209 (441)
Q Consensus 134 ~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~ 209 (441)
...-..+...|++++|.+.+++.....+.... .. -..++..+-..+...|++++|.+.+++... .-.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 88 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWF-YS--------RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 88 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH-HH--------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCch-hH--------HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence 33344566789999999999998774421110 00 123566677788889999999999987622 111
Q ss_pred C--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-
Q 036107 210 L--SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GFS--P-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK- 279 (441)
Q Consensus 210 ~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~- 279 (441)
+ ...++..+-..+...|++++|.+.+++.... |.. | ....+..+-..+...|++++|...+++..+....
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 1 1234566778889999999999999887642 222 2 2345667778899999999999999998654221
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHH
Q 036107 280 ---PSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDT-SFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355 (441)
Q Consensus 280 ---p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~ 355 (441)
....++..+...+...|++++|...+++.....-.++. ..+... .....+..+...|+.++|...
T Consensus 169 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~A~~~ 237 (373)
T 1hz4_A 169 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN-----------ANKVRVIYWQMTGDKAAAANW 237 (373)
T ss_dssp CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH-----------HHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH-----------HHHHHHHHHHHCCCHHHHHHH
Confidence 13467888888999999999999999988653111111 110000 011233457789999999999
Q ss_pred HHHHHHcCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHhcCCccHHHHHHH
Q 036107 356 RQKIEEDSCKPD---CETHARSLKMCCHKKRMKDGMLVLNLMREMLS-KGIVPQE-STHKMLAEELEKKSLGNAKERIDE 430 (441)
Q Consensus 356 ~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~-~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~ 430 (441)
+++.......+. ...+..+...+...|++++|...++....... .|..++. ..+..+..++...|+.++|...++
T Consensus 238 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 317 (373)
T 1hz4_A 238 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 317 (373)
T ss_dssp HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 988765332211 23466777888999999999886664433322 3333333 266777788899999999999988
Q ss_pred HHHHHhh
Q 036107 431 LLTHATE 437 (441)
Q Consensus 431 ~m~~~~~ 437 (441)
......+
T Consensus 318 ~al~~~~ 324 (373)
T 1hz4_A 318 DALKLAN 324 (373)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8665443
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.04 E-value=7.1e-08 Score=90.54 Aligned_cols=317 Identities=9% Similarity=0.003 Sum_probs=201.4
Q ss_pred HHHHHHHhcC--CChHHHHHHHhhhhhHhhhhcCCC--CCCHHHHHHHHHHHH--cCCChhHHH---------HHHHHHH
Q 036107 93 KVSEILRKRY--PSPDKVVEALKCFCFTWAKTQTGY--MHTPETYNAMVEALG--KSKKFGLMW---------ELVKEID 157 (441)
Q Consensus 93 ~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~g~--~p~~~~y~~li~~~~--~~~~~~~a~---------~l~~~m~ 157 (441)
.|.+.|..+| .+..++++|.++++..... ...+ .++...|-.++..-. -.+.+..+. +.++.+.
T Consensus 11 ~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~-~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 89 (378)
T 3q15_A 11 RVGVKINEWYKMIRQFSVPDAEILKAEVEQD-IQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIE 89 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-GGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHh
Confidence 6777777777 7778888888888744332 1122 223344444443311 012222222 6666655
Q ss_pred HhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCC---CcHHHHHHHHHHHHhcCCHHHH
Q 036107 158 ELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CIS---LSSQIFDVLIHGWCKTRKSDYA 231 (441)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~---~~~~~~~~li~~~~~~~~~~~a 231 (441)
... ... +... ....+-..-..+...|++++|...|++... ... ....++..+-..|...|+++.|
T Consensus 90 ~~~-~~~--~~~l------~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A 160 (378)
T 3q15_A 90 TPQ-KKL--TGLL------KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVS 160 (378)
T ss_dssp GGG-HHH--HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccC-CCC--ccHH------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHH
Confidence 422 000 0000 111223344456788999999999988732 111 2345678888999999999999
Q ss_pred HHHHHHHhhC----C-CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHH
Q 036107 232 QKAMKEMFQH----G-FSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GCKP-SVITCTIVMHALEKAKQIYE 300 (441)
Q Consensus 232 ~~~~~~m~~~----g-~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~ 300 (441)
...+++..+. + ..+ ...+++.+-..|...|++++|.+.|++..+. +-.+ ...++..+-..|...|++++
T Consensus 161 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~ 240 (378)
T 3q15_A 161 MYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM 240 (378)
T ss_dssp HHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 9999887642 1 111 2457888889999999999999999987653 2211 24578888899999999999
Q ss_pred HHHHHHHHhhCC---CCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCCH-HHHHH
Q 036107 301 ALKVYEKMKSDD---CLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSC---KPDC-ETHAR 373 (441)
Q Consensus 301 a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p~~-~t~~~ 373 (441)
|...|++..+.. ..|... .++..+...|.+.|++++|...+++..+..- .|.. ..+..
T Consensus 241 A~~~~~~al~~~~~~~~~~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 305 (378)
T 3q15_A 241 AVEHFQKAAKVSREKVPDLLP---------------KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLF 305 (378)
T ss_dssp HHHHHHHHHHHHHHHCGGGHH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCChhHH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999887610 122221 3377888889999999999999999875322 2222 34444
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107 374 SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQ-ESTHKMLAEELEKKSLGNAKERIDELLTHATE 437 (441)
Q Consensus 374 li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 437 (441)
+-..+...++.+...+.+..+++ .+..|+ ...+..+...|.+.|++++|.+.++......+
T Consensus 306 l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 306 LQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 55555566773333332334444 333333 34677888899999999999999998765543
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.03 E-value=1e-08 Score=99.47 Aligned_cols=214 Identities=7% Similarity=-0.010 Sum_probs=171.1
Q ss_pred CHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 036107 193 SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS-DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271 (441)
Q Consensus 193 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~ 271 (441)
.++++.+.++......+.+...+..+-..|...|++ ++|.+.|++..+.. +-+...|..+-..|.+.|++++|.+.|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 466777777776555556888899999999999999 99999999998743 2247899999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHH
Q 036107 272 EMQEKGCKPSVITCTIVMHALEKA---------KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISS 342 (441)
Q Consensus 272 ~m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~ 342 (441)
+..+.. |+...+..+-..+... |++++|.+.|++..+... -+... |..+...
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~----------------~~~lg~~ 222 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRS----------------WYILGNA 222 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHH----------------HHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHH----------------HHHHHHH
Confidence 998764 6778899999999999 999999999999988531 23333 7777777
Q ss_pred HHhc--------CChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 036107 343 ACVR--------SEEGNALKLRQKIEEDSCKP----DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410 (441)
Q Consensus 343 ~~~~--------g~~~~a~~~~~~m~~~g~~p----~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~ 410 (441)
|... |++++|++.|++..+. .| +...|..+-..|...|++++|.+.++...+ .. +-+...+.
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~-p~~~~a~~ 296 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA---LD-PAWPEPQQ 296 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HC-TTCHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC-CCCHHHHH
Confidence 7777 8899999999998875 44 778899999999999999999875544333 21 23456788
Q ss_pred HHHHHHHhcCCccHHHHHHHHH
Q 036107 411 MLAEELEKKSLGNAKERIDELL 432 (441)
Q Consensus 411 ~ll~~~~~~g~~~~a~~~~~~m 432 (441)
.+...+...|++++|.+.+..+
T Consensus 297 ~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 297 REQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 8888888889888888655443
No 73
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.03 E-value=9.8e-09 Score=91.52 Aligned_cols=230 Identities=10% Similarity=0.010 Sum_probs=155.9
Q ss_pred HhcCCHHHHHHHHHHhhh--------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CC-CCCHhhHHHH
Q 036107 189 VKRNSVAHAYKVFLKFKD--------CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH------GF-SPDGVSYTCF 253 (441)
Q Consensus 189 ~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~-~p~~~~~~~l 253 (441)
...|++++|++.|++... ..+....++..+...|...|++++|...|++..+. +- +....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 346777777777766521 22335667888999999999999999999988753 11 2235688999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCCCHHHH
Q 036107 254 IEHYCREKDFRKVDYTLKEMQEK------G-CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD------DCLTDTSFY 320 (441)
Q Consensus 254 i~~~~~~g~~~~a~~l~~~m~~~------g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------g~~~~~~~~ 320 (441)
...+...|++++|.+.|++..+. . .+....++..+...|...|++++|...|++..+. +-.|+..
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-- 169 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA-- 169 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH--
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH--
Confidence 99999999999999999998654 1 1234678888999999999999999999988764 1122211
Q ss_pred HHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHH-HHHhcCChhhHHHHHH
Q 036107 321 SSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED-------SCKPDCETHARSLK-MCCHKKRMKDGMLVLN 392 (441)
Q Consensus 321 ~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~t~~~li~-~~~~~g~~~~a~~~~~ 392 (441)
.++..+...|...|++++|++.+++..+. ...+....+...+. .....+....+.. +.
T Consensus 170 -------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 235 (283)
T 3edt_B 170 -------------KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YG 235 (283)
T ss_dssp -------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------
T ss_pred -------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HH
Confidence 34788888999999999999999988653 22333333333333 3333344444433 22
Q ss_pred HHHHHHHC-C-CCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 036107 393 LMREMLSK-G-IVP-QESTHKMLAEELEKKSLGNAKERIDELLTH 434 (441)
Q Consensus 393 ~~~~m~~~-~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 434 (441)
........ + ..| ...++..+...|.+.|++++|.++++...+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 236 EYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22222121 1 112 244788899999999999999999987654
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.01 E-value=2.3e-08 Score=101.36 Aligned_cols=168 Identities=10% Similarity=-0.015 Sum_probs=144.5
Q ss_pred CCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036107 126 YMHT-PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF 204 (441)
Q Consensus 126 ~~p~-~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 204 (441)
-.|+ ..+|+.+-..+.+.|++++|++.|++..+..+. +..++..+-.+|.+.|++++|++.|++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~--------------~~~a~~nLg~~l~~~g~~~eA~~~~~~A 69 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE--------------FAAAHSNLASVLQQQGKLQEALMHYKEA 69 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3454 578999999999999999999999999886533 6789999999999999999999999987
Q ss_pred hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 036107 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI 283 (441)
Q Consensus 205 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 283 (441)
-+-.+-+...|..+-.+|.+.|++++|.+.|++..+. .| +...|+.+-..+.+.|++++|++.|++..+..- -+..
T Consensus 70 l~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~ 146 (723)
T 4gyw_A 70 IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPD 146 (723)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChH
Confidence 5444556788999999999999999999999998874 34 467899999999999999999999999988642 2578
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 284 TCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
.|..+..++...|++++|.+.+++..+
T Consensus 147 a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 147 AYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 899999999999999999988887654
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.99 E-value=2.2e-07 Score=86.79 Aligned_cols=304 Identities=8% Similarity=-0.020 Sum_probs=198.5
Q ss_pred hcCCChHHHHHHHhhhhhHhhhhcCCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhh
Q 036107 100 KRYPSPDKVVEALKCFCFTWAKTQTGYMHTP----ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRR 175 (441)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~~----~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~ 175 (441)
..+...|++++|+..++...... . ..+. .+++.+-..+...|++++|.+.+++.....+......
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~--~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------- 90 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEEL--P-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH-------- 90 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC--C-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH--------
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC--C-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH--------
Confidence 34456678888888875433221 1 1122 2566677788889999999999998776431111100
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCC--C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC
Q 036107 176 LDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD-----CIS--L-SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GF 243 (441)
Q Consensus 176 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~ 243 (441)
....++..+-..+...|++++|.+.+++.-. +.. | ....+..+-..+...|++++|...+++.... |.
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 0124466777888999999999999987621 221 2 3445677788899999999999999987653 21
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 036107 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS--VITCT----IVMHALEKAKQIYEALKVYEKMKSDDCLTDT 317 (441)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 317 (441)
.....+|..+-..+...|++++|...+++..+..-.++ ..... .....+...|++++|...+++..+....+..
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 250 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 250 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch
Confidence 11235677888889999999999999999865421111 11111 2334577999999999999988764322111
Q ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCChhhHHHHHH
Q 036107 318 SFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED----SCKPDC-ETHARSLKMCCHKKRMKDGMLVLN 392 (441)
Q Consensus 318 ~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~ 392 (441)
... ..+..+...+...|++++|...+++.... |..++. ..+..+-.++...|+.++|...++
T Consensus 251 ~~~-------------~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 317 (373)
T 1hz4_A 251 FLQ-------------GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 317 (373)
T ss_dssp GGH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 100 12566778888999999999999887532 222223 255666778889999999988666
Q ss_pred HHHHHHH-CCCC----CCHHHHHHHHHHHHhcCCccHHHH
Q 036107 393 LMREMLS-KGIV----PQESTHKMLAEELEKKSLGNAKER 427 (441)
Q Consensus 393 ~~~~m~~-~~~~----p~~~~~~~ll~~~~~~g~~~~a~~ 427 (441)
....+.. .|.. ........+++.+......+++..
T Consensus 318 ~al~~~~~~g~~~~~~~~g~~~~~ll~~~~~~~~~~~~~~ 357 (373)
T 1hz4_A 318 DALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 357 (373)
T ss_dssp HHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHhccccHHHHHHHccHHHHHHHHHHHhCCCCchHHH
Confidence 4433322 2332 122345667777888887755543
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.98 E-value=4.6e-08 Score=91.99 Aligned_cols=240 Identities=6% Similarity=-0.075 Sum_probs=172.3
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CC----
Q 036107 136 MVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CI---- 208 (441)
Q Consensus 136 li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~---- 208 (441)
.-..+...|++++|.+.|++........++.. ....++..+-..+...|++++|...+++... ..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRI--------EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHH--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 44556788999999999999887531222110 0346788889999999999999999987622 11
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GC- 278 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~- 278 (441)
.....+++.+-..|...|++++|.+.|++..+. +-.+ ...++..+-..|...|++++|...|++..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 123457888889999999999999999888642 1111 1247888999999999999999999998662 33
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCC---hhHHHH
Q 036107 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCL-TDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE---EGNALK 354 (441)
Q Consensus 279 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~---~~~a~~ 354 (441)
+....++..+...|.+.|++++|...+++..+..-. .+.... ..++.+-..|...|+ .++|+.
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~~~~al~ 327 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL-------------SEFEFLKSLYLSGPDEEAIQGFFD 327 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH-------------HHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH-------------HHHHHHHHHHhCCCcHHHHHHHHH
Confidence 445678899999999999999999999987653110 111110 114556677777887 677777
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 036107 355 LRQKIEEDSCKPD-CETHARSLKMCCHKKRMKDGMLVLNLMREMLS 399 (441)
Q Consensus 355 ~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~ 399 (441)
++++. +..|+ ...+..+-..|...|++++|.+.++...++.+
T Consensus 328 ~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 328 FLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 77665 33333 34667788899999999999887665555443
No 77
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.98 E-value=1.1e-07 Score=91.97 Aligned_cols=334 Identities=11% Similarity=-0.068 Sum_probs=177.6
Q ss_pred CcccccchhhHHHhhhhchhhHHHHHhhhc-------CchhhHHHHHHHHHhcCCChHHHHHHHhhhhhHhhhhc---CC
Q 036107 56 EDFVIPSLASWVESLKLNEQSRISSHALSE-------DHETDVDKVSEILRKRYPSPDKVVEALKCFCFTWAKTQ---TG 125 (441)
Q Consensus 56 ~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~g 125 (441)
...|+.+-......|+.++|...+....+. ...+....++.-+...|...|+.++|+..++....... ..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 344555544555667788887777655432 11222223455566677778888888877763322211 11
Q ss_pred CCC-CHHHHHHHHHHHHc--CCChhHHHHHHHHHHHhcCCCccHHHHHH-HHh---------------------h-cCHH
Q 036107 126 YMH-TPETYNAMVEALGK--SKKFGLMWELVKEIDELSNGYVSLAAMST-VMR---------------------R-LDTR 179 (441)
Q Consensus 126 ~~p-~~~~y~~li~~~~~--~~~~~~a~~l~~~m~~~~~~~~~~~~~~~-~~~---------------------~-~~~~ 179 (441)
..+ ...+|...-.++.+ .+++++|.+.|++..+..|..+....... +.. . .+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 112 34566655444444 34688888888888776544332211111 000 0 0334
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHH
Q 036107 180 AMSVLMDTLVK----RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFI 254 (441)
Q Consensus 180 ~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li 254 (441)
++..+...+.+ .|+.++|.+.+++.....+.+..++..+...|.+.|++++|...|++..+. .|+ ..+|..+-
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHH
Confidence 44444444433 356667777777664444556667777888888888888888888877763 233 34455444
Q ss_pred HHHHhc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 036107 255 EHYCRE-------------------KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315 (441)
Q Consensus 255 ~~~~~~-------------------g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 315 (441)
..|... +.+++|...++...+... .+..++..+-..|...|++++|...|++..+....+
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 443321 224556666666655432 244567778888899999999999999888765433
Q ss_pred CHHHHHHHHHHHHhcCccchHHHHH-HHHHhcCChhHHHHHHHHHHHcC----------------------C-CCCHHHH
Q 036107 316 DTSFYSSLIFILSKAVRFLIYNTMI-SSACVRSEEGNALKLRQKIEEDS----------------------C-KPDCETH 371 (441)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g----------------------~-~p~~~t~ 371 (441)
... ..+ +..+. -.+...|+.++|+..|++..+.. . ..+..+|
T Consensus 368 ~~~--~~~------------~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~ 433 (472)
T 4g1t_A 368 VAK--QLL------------HLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEAL 433 (472)
T ss_dssp HHH--HHH------------HHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHH
T ss_pred hHH--HHH------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 221 111 11111 12235566677777666544321 1 2345678
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHC-CCCCCHHHH
Q 036107 372 ARSLKMCCHKKRMKDGMLVLNLMREMLSK-GIVPQESTH 409 (441)
Q Consensus 372 ~~li~~~~~~g~~~~a~~~~~~~~~m~~~-~~~p~~~~~ 409 (441)
..+-..|...|++++|.+ .+++..+. ...|+..+|
T Consensus 434 ~~LG~~~~~~g~~~~A~~---~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQADE---DSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHCC-------------------------
T ss_pred HHHHHHHHHcCCHHHHHH---HHHHHHhcCCCCCcHhhc
Confidence 888889999999999977 45454433 344555443
No 78
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.97 E-value=1.7e-08 Score=89.89 Aligned_cols=171 Identities=9% Similarity=0.042 Sum_probs=134.4
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhc-----CCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELS-----NGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLK 203 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~-----~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 203 (441)
...+|..+-..+...|++++|.+.+++..... +..+. ...++..+...+...|++++|.+.|.+
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 110 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA-----------VAATLNNLAVLYGKRGKYKEAEPLCKR 110 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH-----------HHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH-----------HHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45688999999999999999999999988752 11111 467888999999999999999999988
Q ss_pred hhhC--------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCC-CHhhHHHHHHHHHhcCCHHHHHH
Q 036107 204 FKDC--------ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH------GFSP-DGVSYTCFIEHYCREKDFRKVDY 268 (441)
Q Consensus 204 ~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~ 268 (441)
.... .+....++..+...|...|++++|.+.|++..+. +-.| ...++..+...+...|++++|..
T Consensus 111 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 190 (283)
T 3edt_B 111 ALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET 190 (283)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6321 2345667888999999999999999999998764 1123 35678889999999999999999
Q ss_pred HHHHHHHc------------------------------------------------CCCCCHHHHHHHHHHHHhcCCHHH
Q 036107 269 TLKEMQEK------------------------------------------------GCKPSVITCTIVMHALEKAKQIYE 300 (441)
Q Consensus 269 l~~~m~~~------------------------------------------------g~~p~~~~~~~ll~~~~~~~~~~~ 300 (441)
.+++..+. ..+....++..+...|.+.|++++
T Consensus 191 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 270 (283)
T 3edt_B 191 LYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEA 270 (283)
T ss_dssp HHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 99988653 112224567778888888899999
Q ss_pred HHHHHHHHhh
Q 036107 301 ALKVYEKMKS 310 (441)
Q Consensus 301 a~~~~~~m~~ 310 (441)
|..+|++..+
T Consensus 271 A~~~~~~al~ 280 (283)
T 3edt_B 271 AHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9988887765
No 79
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.93 E-value=7.2e-08 Score=75.09 Aligned_cols=130 Identities=15% Similarity=0.090 Sum_probs=111.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 036107 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR 259 (441)
Q Consensus 180 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 259 (441)
.+..+...+...|++++|..+++.+....+.+...+..+...+...|++++|.++|+++.+.+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 566778889999999999999999855445577888899999999999999999999998753 3456788889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
.|++++|.+.++++.+... .+...+..+...+.+.|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999987643 36788889999999999999999999998764
No 80
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.92 E-value=8.5e-08 Score=74.68 Aligned_cols=131 Identities=15% Similarity=0.120 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL 210 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 210 (441)
..|..+...+...|++++|.++++++.+..+. +...+..+...+...|++++|...++++....+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--------------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 35778888899999999999999999875422 5678888899999999999999999998554556
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
+...+..+...+...|++++|.++|+++.+.. +.+..++..+...+.+.|++++|...++++.+.
T Consensus 68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77789999999999999999999999998753 235778889999999999999999999998765
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.89 E-value=4.8e-07 Score=84.84 Aligned_cols=235 Identities=10% Similarity=-0.040 Sum_probs=166.8
Q ss_pred HHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CC---C-C
Q 036107 138 EALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CI---S-L 210 (441)
Q Consensus 138 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~---~-~ 210 (441)
..+...|++++|.+.|++........++.. ....++..+-..+...|+++.|...+++... .. . .
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDI--------EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChH--------HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 345688999999999999887532222111 1356788889999999999999999987622 11 1 1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC
Q 036107 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GCKPS 281 (441)
Q Consensus 211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p~ 281 (441)
...+++.+-..|...|++++|.+.|++..+. |-.+ ...++..+-..|...|++++|...|++..+. +.+..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 3557888889999999999999999887652 1111 2357888889999999999999999998761 33334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCC---hhHHHHHHHH
Q 036107 282 VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSE---EGNALKLRQK 358 (441)
Q Consensus 282 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~---~~~a~~~~~~ 358 (441)
..++..+...+.+.|++++|...+++..+..-..+...+. ..++.+-..|...|+ +.+|+..+++
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------------~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK------------ELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH------------HHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH------------HHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 7788899999999999999999999987632211111110 114555556666777 6777777766
Q ss_pred HHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHH
Q 036107 359 IEEDSCKPDC-ETHARSLKMCCHKKRMKDGMLVLNLMR 395 (441)
Q Consensus 359 m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~ 395 (441)
.+..|+. ..+..+-..|...|++++|.+.++...
T Consensus 329 ---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 329 ---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2333332 356677888999999999988655443
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.88 E-value=1.2e-07 Score=96.09 Aligned_cols=165 Identities=12% Similarity=0.039 Sum_probs=140.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIE 255 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~ 255 (441)
+..+++.|-..+.+.|++++|++.|++.-+-.+-+...|+.+-.+|.+.|++++|++.|++..+. .| +...|..+-.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 56889999999999999999999999885444557888999999999999999999999999874 35 4678999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccch
Q 036107 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335 (441)
Q Consensus 256 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (441)
++.+.|++++|++.|++..+..- -+...|+.+-.+|.+.|++++|.+.|++..+. .|+.. ..
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~---------------~a 147 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFP---------------DA 147 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCH---------------HH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh---------------HH
Confidence 99999999999999999987643 26789999999999999999999999999875 34322 23
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 036107 336 YNTMISSACVRSEEGNALKLRQKIEE 361 (441)
Q Consensus 336 ~~~li~~~~~~g~~~~a~~~~~~m~~ 361 (441)
|..+...|...|++++|.+.+++..+
T Consensus 148 ~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 148 YCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 78888888889999999888877653
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.82 E-value=1.3e-06 Score=75.37 Aligned_cols=160 Identities=7% Similarity=-0.097 Sum_probs=118.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290 (441)
Q Consensus 211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 290 (441)
+...+...-..+.+.|++++|.+.|++..+..-.++...+..+-.++...|++++|...|++..+.... +...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 456677777788888888888888888877543367777777888888899999999999888775432 5677888888
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---
Q 036107 291 ALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD--- 367 (441)
Q Consensus 291 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--- 367 (441)
.+...|++++|...|++..+.. +.+...+..+... |..+-..+...|++++|++.|++..+. .|+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~---------~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 152 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIY---------YLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWK 152 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH---------HHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHH---------HHHHhHHHHHhccHHHHHHHHHHHHhc--CCCccc
Confidence 8999999999999999888753 1233333333333 666667788999999999999998864 666
Q ss_pred HHHHHHHHHHHHhcCC
Q 036107 368 CETHARSLKMCCHKKR 383 (441)
Q Consensus 368 ~~t~~~li~~~~~~g~ 383 (441)
...+..+-..+...|+
T Consensus 153 ~~~~~~l~~~~~~~~~ 168 (228)
T 4i17_A 153 TDALYSLGVLFYNNGA 168 (228)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666666665544
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.81 E-value=1.2e-06 Score=75.59 Aligned_cols=133 Identities=13% Similarity=0.013 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS-LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 255 (441)
|+..+...-..+.+.|++++|.+.|+..-...+ ++...+..+-.++.+.|++++|.+.|++..+... -+...|..+-.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 678888888999999999999999998855444 6777777789999999999999999999987532 24578889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 256 HYCREKDFRKVDYTLKEMQEKGCKPSV-------ITCTIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 256 ~~~~~g~~~~a~~l~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
.+...|++++|...|++..+.... +. ..|..+-..+...|++++|.+.|++..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 999999999999999999875322 34 45778888899999999999999999886
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.72 E-value=1.5e-06 Score=78.33 Aligned_cols=218 Identities=6% Similarity=-0.109 Sum_probs=148.4
Q ss_pred hHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHH
Q 036107 105 PDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL 184 (441)
Q Consensus 105 ~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (441)
++++++|...|. .....|...|++++|.+.|++.........+. .....+|+.+
T Consensus 30 ~~~~~~A~~~~~------------------~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~a~~~~~l 83 (292)
T 1qqe_A 30 SYKFEEAADLCV------------------QAATIYRLRKELNLAGDSFLKAADYQKKAGNE--------DEAGNTYVEA 83 (292)
T ss_dssp HHHHHHHHHHHH------------------HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHH
T ss_pred CccHHHHHHHHH------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCH--------HHHHHHHHHH
Confidence 556888877763 22456788999999999999877642110000 0024688899
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh----CCCC--cHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCC----CCCC-HhhHHH
Q 036107 185 MDTLVKRNSVAHAYKVFLKFKD----CISL--SSQIFDVLIHGWCKT-RKSDYAQKAMKEMFQHG----FSPD-GVSYTC 252 (441)
Q Consensus 185 i~~~~~~g~~~~a~~~~~~~~~----~~~~--~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g----~~p~-~~~~~~ 252 (441)
-..|.+.|++++|+..|++.-. .-.+ -..+++.+-..|... |++++|...|++..+.. -.+. ..+|..
T Consensus 84 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 163 (292)
T 1qqe_A 84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK 163 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 9999999999999999987621 1111 245788889999996 99999999999887521 1001 356888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 036107 253 FIEHYCREKDFRKVDYTLKEMQEKGCKPSV------ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFI 326 (441)
Q Consensus 253 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 326 (441)
+...+.+.|++++|...|++..+....... ..|..+..++...|++++|...|++..+. .|+....
T Consensus 164 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~------ 235 (292)
T 1qqe_A 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADS------ 235 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------------
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCc------
Confidence 999999999999999999999876433221 26777888899999999999999998764 2221100
Q ss_pred HHhcCccchHHHHHHHHH--hcCChhHHHHHHHHHH
Q 036107 327 LSKAVRFLIYNTMISSAC--VRSEEGNALKLRQKIE 360 (441)
Q Consensus 327 ~~~~g~~~~~~~li~~~~--~~g~~~~a~~~~~~m~ 360 (441)
.....+..++.+|. ..+++++|++.|+++.
T Consensus 236 ----~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 236 ----RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp ------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 00011334444443 3456677777776553
No 86
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.71 E-value=8.7e-07 Score=85.24 Aligned_cols=220 Identities=9% Similarity=-0.019 Sum_probs=146.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHH----HHHhhhCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCHhh
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKV----FLKFKDCISLSSQIFDVLIHGWCKTR---KSDYAQKAMKEMFQHGFSPDGVS 249 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~ 249 (441)
++.....+-..|...+.++.+... +.....+ .|+ .+..|-..|.+.| +.++|.+.|++..+.|. ++...
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~-~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~ 215 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT-TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQR 215 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT-CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC-CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHH
Confidence 556677777777777755444444 3333322 233 6778888888888 89999999999888763 45554
Q ss_pred HHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 036107 250 YTCFIEHYCRE----KDFRKVDYTLKEMQEKGCKPSVITCTIVMHA-L--EKAKQIYEALKVYEKMKSDDCLTDTSFYSS 322 (441)
Q Consensus 250 ~~~li~~~~~~----g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 322 (441)
+..+-..|... +++++|...|++.. .| +...+..|-.. + ...+++++|.+.|++..+.| +..
T Consensus 216 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~---- 284 (452)
T 3e4b_A 216 VDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR---- 284 (452)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH----
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH----
Confidence 45566666554 68999999999987 33 44556666655 3 46889999999999988877 232
Q ss_pred HHHHHHhcCccchHHHHHHHHHhcC-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHH
Q 036107 323 LIFILSKAVRFLIYNTMISSACVRS-----EEGNALKLRQKIEEDSCKPDCETHARSLKMCCH----KKRMKDGMLVLNL 393 (441)
Q Consensus 323 li~~~~~~g~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~ 393 (441)
.+..+-..|. .| ++++|++.|++.. .| +...+..|-..|.. ..++++|.+ .
T Consensus 285 ------------A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~---~ 344 (452)
T 3e4b_A 285 ------------AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALD---H 344 (452)
T ss_dssp ------------HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHH---H
T ss_pred ------------HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHH---H
Confidence 2566666665 55 8999999998876 33 55556666666655 237777755 6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCccHHHHHHHHHHH
Q 036107 394 MREMLSKGIVPQESTHKMLAEELEK----KSLGNAKERIDELLTH 434 (441)
Q Consensus 394 ~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~ 434 (441)
+++..+.|. | .....|-..|.. ..+.++|..+++.-..
T Consensus 345 ~~~Aa~~g~-~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 345 LLTAARNGQ-N--SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHTTTC-T--THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHhhCh-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 666666664 2 334445555553 3478888888877543
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.71 E-value=2.4e-06 Score=76.43 Aligned_cols=224 Identities=10% Similarity=0.073 Sum_probs=148.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 036107 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261 (441)
Q Consensus 182 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 261 (441)
--+.+++...|+.+.. . .-.|....+..+... ...+ |...|++....+ .++..++..+..++...|
T Consensus 49 ~~~~Rs~iAlg~~~~~------~--~~~~~~~a~~~la~~-~~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g 114 (310)
T 3mv2_B 49 FYKAKTLLALGQYQSQ------D--PTSKLGKVLDLYVQF-LDTK----NIEELENLLKDK-QNSPYELYLLATAQAILG 114 (310)
T ss_dssp HHHHHHHHHTTCCCCC------C--SSSTTHHHHHHHHHH-HTTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCccC------C--CCCHHHHHHHHHHHH-hccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 3344666666665531 1 123444344444333 3332 788888888765 456666678888999999
Q ss_pred CHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHhcCccch
Q 036107 262 DFRKVDYTLKEMQEKGC-KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT-----DTSFYSSLIFILSKAVRFLI 335 (441)
Q Consensus 262 ~~~~a~~l~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~ 335 (441)
++++|++++.+..+.|- .-+...+..++..+.+.|+++.|.+.++.|.+. .| +..+...+..+
T Consensus 115 ~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea--------- 183 (310)
T 3mv2_B 115 DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAES--------- 183 (310)
T ss_dssp CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHH---------
T ss_pred CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHH---------
Confidence 99999999999866654 236778888999999999999999999999875 44 23332222222
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH-HC-C----CCCCHHHH
Q 036107 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREML-SK-G----IVPQESTH 409 (441)
Q Consensus 336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~-~~-~----~~p~~~~~ 409 (441)
.+......++..+|..+|+++.+. .|+..+-..++.++.+.|++++|++.++.+.+.. +- . -.-+..+.
T Consensus 184 ---~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L 258 (310)
T 3mv2_B 184 ---YIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL 258 (310)
T ss_dssp ---HHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred ---HHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence 122222334899999999998754 4664455556668899999999999665443321 00 1 12355566
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhh
Q 036107 410 KMLAEELEKKSLGNAKERIDELLTHATE 437 (441)
Q Consensus 410 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 437 (441)
..++......|+ +|.++++++.+...
T Consensus 259 aN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 259 ANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 566666666776 88899988887653
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.66 E-value=1.4e-06 Score=76.96 Aligned_cols=173 Identities=11% Similarity=0.006 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC-HhhHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS---SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF-SPD-GVSYT 251 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~ 251 (441)
+...+-.+-..+.+.|++++|...|+.+....+.+ ...+..+-.+|.+.|++++|...|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 56777777888899999999999999985543334 67788888999999999999999999987421 112 34667
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHHHH
Q 036107 252 CFIEHYCR--------EKDFRKVDYTLKEMQEKGCKPSVITC-----------------TIVMHALEKAKQIYEALKVYE 306 (441)
Q Consensus 252 ~li~~~~~--------~g~~~~a~~l~~~m~~~g~~p~~~~~-----------------~~ll~~~~~~~~~~~a~~~~~ 306 (441)
.+-.++.. .|++++|...|++..+.... +.... ..+...|.+.|++++|...|+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77778888 99999999999999876321 22222 455778999999999999999
Q ss_pred HHhhCCCCC--CHHHHHHHHHHHHhcCccchHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCCCH
Q 036107 307 KMKSDDCLT--DTSFYSSLIFILSKAVRFLIYNTMISSACVR----------SEEGNALKLRQKIEEDSCKPDC 368 (441)
Q Consensus 307 ~m~~~g~~~--~~~~~~~li~~~~~~g~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~p~~ 368 (441)
...+..... .... +..+..+|... |++++|+..|++..+. .|+.
T Consensus 173 ~~l~~~p~~~~~~~a----------------~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 173 AVFDAYPDTPWADDA----------------LVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHCTTSTTHHHH----------------HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHCCCCchHHHH----------------HHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 998753211 1222 44555555544 8889999999998865 4554
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.63 E-value=5.6e-06 Score=74.55 Aligned_cols=190 Identities=13% Similarity=-0.004 Sum_probs=131.4
Q ss_pred HHHHhcCCHHHHHHHHHHhhh-----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHH
Q 036107 186 DTLVKRNSVAHAYKVFLKFKD-----CISL-SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GFSP-DGVSYTCFI 254 (441)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li 254 (441)
..|...|++++|.+.|.+.-. +.++ ...+|+.+-.+|.+.|++++|...|++..+. |-.. -..+|+.+-
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356778999999999987621 2222 2568999999999999999999999887652 1111 135788888
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 036107 255 EHYCRE-KDFRKVDYTLKEMQEK----GCKPS-VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILS 328 (441)
Q Consensus 255 ~~~~~~-g~~~~a~~l~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 328 (441)
..|... |++++|+..|++..+. +-.+. ..++..+...+.+.|++++|...|++..+.........|.. -
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~---- 199 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL-K---- 199 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH-H----
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH-H----
Confidence 999996 9999999999987653 11111 45788899999999999999999999988543322110000 0
Q ss_pred hcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--hcCChhhH
Q 036107 329 KAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC------ETHARSLKMCC--HKKRMKDG 387 (441)
Q Consensus 329 ~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~t~~~li~~~~--~~g~~~~a 387 (441)
..|..+...+...|++++|+..|++..+ +.|+. ..+..++.++. ..+++++|
T Consensus 200 -----~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A 259 (292)
T 1qqe_A 200 -----DYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEH 259 (292)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHH
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1267777888899999999999999764 23332 13445566654 23445554
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.62 E-value=5.5e-06 Score=71.40 Aligned_cols=172 Identities=10% Similarity=0.028 Sum_probs=118.6
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 208 (441)
+...+-.+...+.+.|++++|.+.|+++....+..+. ....+..+..++.+.|++++|...|+++-+..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY-----------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 3444555566777888889999988888875433221 23567777788888899999988888873322
Q ss_pred CCcH---HHHHHHHHHHH------------------hcCCHHHHHHHHHHHhhCCCCCCHh-hH----------------
Q 036107 209 SLSS---QIFDVLIHGWC------------------KTRKSDYAQKAMKEMFQHGFSPDGV-SY---------------- 250 (441)
Q Consensus 209 ~~~~---~~~~~li~~~~------------------~~~~~~~a~~~~~~m~~~g~~p~~~-~~---------------- 250 (441)
+-+. ..+-.+-.++. ..|++++|...|++..+. .|+.. .+
T Consensus 72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHH
Confidence 2221 12333333333 257889999999998874 24432 22
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 036107 251 -TCFIEHYCREKDFRKVDYTLKEMQEKGCKP--SVITCTIVMHALEKAKQIYEALKVYEKMKSDDC 313 (441)
Q Consensus 251 -~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 313 (441)
-.+...+.+.|++++|...|+++.+..... ....+..+..++.+.|++++|.+.++.+...+.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 234456788999999999999998763221 135688899999999999999999999887643
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.59 E-value=3.2e-06 Score=74.63 Aligned_cols=170 Identities=12% Similarity=0.037 Sum_probs=130.3
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC- 207 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 207 (441)
+...+-..-..+.+.|++++|.+.|+++....+..+. ....+..+..++.+.|++++|...|+..-..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 82 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW-----------AADAQFYLARAYYQNKEYLLAASEYERFIQIY 82 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc-----------hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence 5667777777888999999999999999886533211 2677888888999999999999999988432
Q ss_pred --CCCcHHHHHHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCCCH-hhH-----------------HHHHHHHHh
Q 036107 208 --ISLSSQIFDVLIHGWCK--------TRKSDYAQKAMKEMFQHGFSPDG-VSY-----------------TCFIEHYCR 259 (441)
Q Consensus 208 --~~~~~~~~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~-~~~-----------------~~li~~~~~ 259 (441)
.+.....+..+-.++.+ .|++++|...|++..+. .|+. ... ..+-..|.+
T Consensus 83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 160 (261)
T 3qky_A 83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYER 160 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334566777778888 99999999999999874 2432 333 445677889
Q ss_pred cCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhC
Q 036107 260 EKDFRKVDYTLKEMQEKGCKP--SVITCTIVMHALEKA----------KQIYEALKVYEKMKSD 311 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~g~~p--~~~~~~~ll~~~~~~----------~~~~~a~~~~~~m~~~ 311 (441)
.|++++|...|++..+..... ....+..+..+|... |++++|...|+...+.
T Consensus 161 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 161 RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 999999999999998753221 345777788888866 8999999999999875
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.58 E-value=4.2e-06 Score=71.20 Aligned_cols=169 Identities=10% Similarity=0.002 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHH----------------HHHHHHhcCCH
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSV----------------LMDTLVKRNSV 194 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~ 194 (441)
..+-..-..+.+.|++++|.+.|++..+..|. +...+.. +-..+.+.|++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 70 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID--------------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNY 70 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH--------------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCH
Confidence 33444455677889999999999998875422 3344444 88889999999
Q ss_pred HHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCC--HHHHHHHHH
Q 036107 195 AHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKD--FRKVDYTLK 271 (441)
Q Consensus 195 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~--~~~a~~l~~ 271 (441)
++|...|++.-...+-+...+..+-..+...|++++|...|++..+. .| +..+|..+-..|...|+ ...+...++
T Consensus 71 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 148 (208)
T 3urz_A 71 DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYK 148 (208)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999985545667888999999999999999999999999874 34 46778888877766654 344555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 036107 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF 319 (441)
Q Consensus 272 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 319 (441)
.... ..|....+...-.++...|++++|...|++..+. .|+...
T Consensus 149 ~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 149 KLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp ---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 5432 2233334444555677789999999999999875 566543
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.56 E-value=1.2e-05 Score=71.87 Aligned_cols=184 Identities=7% Similarity=-0.050 Sum_probs=129.3
Q ss_pred HHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036107 197 AYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF-SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275 (441)
Q Consensus 197 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 275 (441)
|+..|+++-..-.++..++..+-.++...|++++|++++.+-...|- .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 67778776433245566666788899999999999999999866543 23567888999999999999999999999987
Q ss_pred cCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhc
Q 036107 276 KGCKP-----SVITCTIVMHALE--KAK--QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR 346 (441)
Q Consensus 276 ~g~~p-----~~~~~~~ll~~~~--~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~ 346 (441)
. .| +..+...|..++. ..| ++.+|..+|+++.+.. |+..+ -..++.++.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~----------------~~lLln~~~~~ 224 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKT----------------QLGLLNLHLQQ 224 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHH----------------HHHHHHHHHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCccc----------------HHHHHHHHHHc
Confidence 5 45 3566777777733 334 8999999999997753 44211 23344478899
Q ss_pred CChhHHHHHHHHHHHc-----CC---CC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHH
Q 036107 347 SEEGNALKLRQKIEED-----SC---KP-DCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES 407 (441)
Q Consensus 347 g~~~~a~~~~~~m~~~-----g~---~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~ 407 (441)
|++++|.+.++.+.+. .. .| |..++..+|......|+ ++.+ ++.++.+ ..|+..
T Consensus 225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~---l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTED---LTNQLVK--LDHEHA 287 (310)
T ss_dssp TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHH---HHHHHHH--TTCCCH
T ss_pred CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHH---HHHHHHH--hCCCCh
Confidence 9999999999977642 11 24 44556455555555676 6666 4555443 345543
No 94
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.55 E-value=2.2e-06 Score=70.77 Aligned_cols=161 Identities=8% Similarity=-0.013 Sum_probs=120.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcH
Q 036107 133 YNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS 212 (441)
Q Consensus 133 y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 212 (441)
+...-..+.+.|++++|...|++..+..|. +...+..+...+.+.|++++|+..++......+ +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--------------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~ 73 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS--------------RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN 73 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT--------------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--------------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch
Confidence 445566788899999999999987764422 678899999999999999999999998744323 44
Q ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 036107 213 QIFDVLIHG-WCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP-SVITCTIVM 289 (441)
Q Consensus 213 ~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~ll 289 (441)
..+..+... +.+.+...+|...|++..+. .| +...+..+-..+...|++++|...|++..+....+ +...+..+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~ 151 (176)
T 2r5s_A 74 SYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFM 151 (176)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHH
Confidence 333322211 22323334578888888763 35 47888889999999999999999999998865432 356888999
Q ss_pred HHHHhcCCHHHHHHHHHHHhh
Q 036107 290 HALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 290 ~~~~~~~~~~~a~~~~~~m~~ 310 (441)
..+...|+.++|...|++...
T Consensus 152 ~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 152 DILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999887653
No 95
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.52 E-value=3.1e-06 Score=83.91 Aligned_cols=154 Identities=4% Similarity=-0.146 Sum_probs=117.5
Q ss_pred CCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHH
Q 036107 143 SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGW 222 (441)
Q Consensus 143 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 222 (441)
.|++++|.+.+++..+..+. +...+..+-..+.+.|++++|.+.|++.-+..+.+...+..+-..|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 67 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--------------DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVR 67 (568)
T ss_dssp -------------------C--------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 47889999999988774422 6788999999999999999999999998655566788899999999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHH
Q 036107 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKA---KQIY 299 (441)
Q Consensus 223 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~---~~~~ 299 (441)
...|++++|.+.|++..+.. +.+...|..+-..+.+.|++++|.+.|++..+... -+...+..+..++... |+++
T Consensus 68 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~ 145 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALD 145 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHH
Confidence 99999999999999998753 23567899999999999999999999999987643 3678899999999999 9999
Q ss_pred HHHHHHHHHhhCC
Q 036107 300 EALKVYEKMKSDD 312 (441)
Q Consensus 300 ~a~~~~~~m~~~g 312 (441)
+|.+.+++..+.+
T Consensus 146 ~A~~~~~~al~~~ 158 (568)
T 2vsy_A 146 VLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988754
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.50 E-value=6.4e-06 Score=73.94 Aligned_cols=165 Identities=12% Similarity=-0.022 Sum_probs=130.2
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 208 (441)
+...+..+-..+.+.|++++|.+.|++.....+. +...+..+...+.+.|++++|...+++.....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--------------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~ 181 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ--------------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD 181 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS--------------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc--------------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence 3456777778888999999999999999886533 67888999999999999999999999884432
Q ss_pred CCcHHHHH-HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHH
Q 036107 209 SLSSQIFD-VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK-PSVITCT 286 (441)
Q Consensus 209 ~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~~~~ 286 (441)
|+..... .....+.+.++.++|.+.|++..... +.+...+..+-..+...|++++|...|.+..+.... .+...+.
T Consensus 182 -p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 182 -QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 3433322 23334667788888999998887643 235788889999999999999999999999886432 2367899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 036107 287 IVMHALEKAKQIYEALKVYEKMK 309 (441)
Q Consensus 287 ~ll~~~~~~~~~~~a~~~~~~m~ 309 (441)
.+...+...|+.++|...|++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999988887654
No 97
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.49 E-value=0.00026 Score=67.84 Aligned_cols=224 Identities=9% Similarity=-0.022 Sum_probs=153.8
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCCCCHhh
Q 036107 177 DTRAMSVLMDTLVKRN---SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKT----RKSDYAQKAMKEMFQHGFSPDGVS 249 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~ 249 (441)
++..+..|-..|.+.| +.++|++.|...-..-.++...+..|-..|... +++++|.++|++.. . -+...
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a 250 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPAS 250 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHH
Confidence 5568888889999999 999999999888555566776666777777554 79999999999987 3 35556
Q ss_pred HHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhhCCCCCCHHHHH
Q 036107 250 YTCFIEH-Y--CREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK-----QIYEALKVYEKMKSDDCLTDTSFYS 321 (441)
Q Consensus 250 ~~~li~~-~--~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~m~~~g~~~~~~~~~ 321 (441)
+..+-.. + ...+++++|.+.|++..+.| +...+..|-..|. .| ++++|...|+... .| +...
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A-- 320 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAA-- 320 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHH--
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHH--
Confidence 6666655 3 46899999999999998887 5667777777776 55 9999999999888 44 2222
Q ss_pred HHHHHHHhcCccchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHH
Q 036107 322 SLIFILSKAVRFLIYNTMISSACV----RSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCH----KKRMKDGMLVLNL 393 (441)
Q Consensus 322 ~li~~~~~~g~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~ 393 (441)
+..+-..|.. ..+.++|...|++..+.|. |+. ...|-..|.. ..+.++|.. .
T Consensus 321 --------------~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~A--~~~Lg~~y~~G~g~~~d~~~A~~---~ 380 (452)
T 3e4b_A 321 --------------DYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NSA--DFAIAQLFSQGKGTKPDPLNAYV---F 380 (452)
T ss_dssp --------------HHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TTH--HHHHHHHHHSCTTBCCCHHHHHH---H
T ss_pred --------------HHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HHH--HHHHHHHHHhCCCCCCCHHHHHH---H
Confidence 5555555655 4489999999999888773 333 4445555543 346677755 6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107 394 MREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA 435 (441)
Q Consensus 394 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 435 (441)
+..-.+.|.. +.......+......++.++|.++.+...+.
T Consensus 381 ~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 381 SQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 6666556643 2222222222222334566666666665544
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.49 E-value=1.1e-05 Score=68.52 Aligned_cols=112 Identities=10% Similarity=0.017 Sum_probs=68.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 183 VLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV----------------LIHGWCKTRKSDYAQKAMKEMFQHGFSPD 246 (441)
Q Consensus 183 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 246 (441)
.....+.+.|++++|...|+..-...+-+...|.. +-.+|.+.|++++|...|++..+.. +-+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 87 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNN 87 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
Confidence 34445667888999988888773322233444544 6666667777777777777666532 124
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036107 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296 (441)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 296 (441)
...|..+-..+...|++++|...|++..+... -+..+|..+-.+|...|
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHh
Confidence 55666666667777777777777777666432 24556666655554443
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.49 E-value=5.3e-06 Score=68.40 Aligned_cols=162 Identities=9% Similarity=0.008 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH-HH
Q 036107 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH-YC 258 (441)
Q Consensus 180 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~ 258 (441)
.+..+...+.+.|++++|...|++.-...+.+...+..+-..+.+.|++++|...|++.... .|+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 34455667889999999999999874444557778999999999999999999999998764 3444333222111 22
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCccchHH
Q 036107 259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT-DTSFYSSLIFILSKAVRFLIYN 337 (441)
Q Consensus 259 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~~~ 337 (441)
..++..+|...+++..+... -+...+..+..++...|++++|...|+++.+....+ +... +.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a----------------~~ 148 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEV----------------KK 148 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHH----------------HH
T ss_pred hhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHH----------------HH
Confidence 22333457888888876532 257889999999999999999999999998875432 2222 77
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 036107 338 TMISSACVRSEEGNALKLRQKIE 360 (441)
Q Consensus 338 ~li~~~~~~g~~~~a~~~~~~m~ 360 (441)
.+...+...|+.++|...|++..
T Consensus 149 ~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 149 TFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHH
Confidence 88888888999999999998764
No 100
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.47 E-value=6.2e-05 Score=67.60 Aligned_cols=165 Identities=12% Similarity=-0.010 Sum_probs=121.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----Hhh
Q 036107 181 MSVLMDTLVKRNSVAHAYKVFLKFKDC--ISLSS----QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS-PD----GVS 249 (441)
Q Consensus 181 ~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~ 249 (441)
+...+..+.+.|++++|.++++..... ..|+. ..+..+...+...+++++|...|++....... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 334467888999999999999997442 23332 23445666777888999999999999874222 22 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCCHHH
Q 036107 250 YTCFIEHYCREKDFRKVDYTLKEMQEK-----GCKPS-VITCTIVMHALEKAKQIYEALKVYEKMKS----DDCLTDTSF 319 (441)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~l~~~m~~~-----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~g~~~~~~~ 319 (441)
|+.+-..|...|++++|...|++..+. +..+. ..+|..+...|.+.|++++|...+++..+ .+..+...
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~- 236 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG- 236 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH-
Confidence 899999999999999999999998741 22222 34788999999999999999999998764 23222211
Q ss_pred HHHHHHHHHhcCccchHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 036107 320 YSSLIFILSKAVRFLIYNTMISSACVRSE-EGNALKLRQKIE 360 (441)
Q Consensus 320 ~~~li~~~~~~g~~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 360 (441)
.+|..+-..|.+.|+ .++|++.+++..
T Consensus 237 --------------~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 237 --------------QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp --------------HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 237778888888885 589988888764
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.46 E-value=1.5e-05 Score=72.22 Aligned_cols=169 Identities=11% Similarity=-0.011 Sum_probs=124.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh----hC
Q 036107 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK----DC 207 (441)
Q Consensus 132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~ 207 (441)
.|+.....|...|++++|.+.|.+............ .-..+|+.+...|.+.|++++|+..|++.- ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 109 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLF--------HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN 109 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 566667788899999999999998776431111000 024578888899999999999999998752 11
Q ss_pred CCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 036107 208 ISL--SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK---- 276 (441)
Q Consensus 208 ~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---- 276 (441)
-.+ ...+++.+-..|.. |++++|.+.|++..+. |-.+ ...+++.+-..+.+.|++++|...|++..+.
T Consensus 110 g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 110 GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 122 24567888888888 9999999999887652 1111 1467888899999999999999999998653
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 277 GCKPS-VITCTIVMHALEKAKQIYEALKVYEKMK 309 (441)
Q Consensus 277 g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 309 (441)
+..++ ...+..+..++...|++++|...|++..
T Consensus 189 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 22222 2366777778888899999999999988
No 102
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.45 E-value=6.1e-05 Score=67.64 Aligned_cols=173 Identities=9% Similarity=0.003 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--- 206 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--- 206 (441)
...+...+..+...|++++|.+.+.+..+..+..+.... ....+..+...+...|++++|...++..-.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ--------FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHH--------HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHH--------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 345667788899999999999999988775422211100 122344466677888999999999987622
Q ss_pred -CCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 036107 207 -CISLS--SQIFDVLIHGWCKTRKSDYAQKAMKEMFQH-GFSPD-----GVSYTCFIEHYCREKDFRKVDYTLKEMQEK- 276 (441)
Q Consensus 207 -~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~-----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~- 276 (441)
...+. ..+|+.+-..|...|++++|...|++..+. ...|+ ..+|..+...|.+.|++++|...+++..+.
T Consensus 147 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 147 TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 11222 457889999999999999999999988621 01122 258889999999999999999999987543
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHhh
Q 036107 277 ---GCKP-SVITCTIVMHALEKAKQIYEA-LKVYEKMKS 310 (441)
Q Consensus 277 ---g~~p-~~~~~~~ll~~~~~~~~~~~a-~~~~~~m~~ 310 (441)
+... -..+|..+-.+|.+.|++++| ...++....
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 2211 167888999999999999999 777776543
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.44 E-value=1.7e-05 Score=68.22 Aligned_cols=170 Identities=14% Similarity=0.024 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh----h
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS---LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV----S 249 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~ 249 (441)
+...+-.+...+.+.|++++|...|+.+....+ .....+..+..+|.+.|++++|...|++..+.. |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 345566667788899999999999999844222 224567778899999999999999999998742 4322 3
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCHHHH-----------------HHHHHHHHh
Q 036107 250 YTCFIEHYCR------------------EKDFRKVDYTLKEMQEKGCKPSVITC-----------------TIVMHALEK 294 (441)
Q Consensus 250 ~~~li~~~~~------------------~g~~~~a~~l~~~m~~~g~~p~~~~~-----------------~~ll~~~~~ 294 (441)
+..+-.++.+ .|++++|...|+++.+.... +...+ ..+...|.+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344433 57899999999999875321 11111 234556788
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 036107 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS 363 (441)
Q Consensus 295 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 363 (441)
.|++++|...|+.+.+.. |+..... ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 160 ~~~~~~A~~~~~~~l~~~--p~~~~~~------------~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 160 RGAWVAVVNRVEGMLRDY--PDTQATR------------DALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTSHHHH------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred cCcHHHHHHHHHHHHHHC--cCCCccH------------HHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 999999999999988753 2211000 127778888999999999999999887653
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.43 E-value=0.00015 Score=65.30 Aligned_cols=223 Identities=8% Similarity=-0.079 Sum_probs=159.2
Q ss_pred HHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCcHHHHH
Q 036107 139 ALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN--SVAHAYKVFLKFKDCISLSSQIFD 216 (441)
Q Consensus 139 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~ 216 (441)
...+....++|+++++.+....|. +..+|+.--..+...| ++++++++++.+-...+-+..+|+
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~--------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~ 107 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELAS--------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWN 107 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcH--------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHH
Confidence 334445557899999999886644 5567777777777788 999999999988544455666676
Q ss_pred HHHHHH----Hhc---CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHH
Q 036107 217 VLIHGW----CKT---RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR--KVDYTLKEMQEKGCKPSVITCTI 287 (441)
Q Consensus 217 ~li~~~----~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~l~~~m~~~g~~p~~~~~~~ 287 (441)
.--..+ .+. +++++++++++.+.+.. +.|..+|+----.+.+.|.++ ++++.++++.+.... |...|+.
T Consensus 108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~ 185 (306)
T 3dra_A 108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSH 185 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 544444 444 78999999999998753 347788888888888888888 999999999887665 7888887
Q ss_pred HHHHHHhcCC------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhH-HHHHHHHHH
Q 036107 288 VMHALEKAKQ------IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN-ALKLRQKIE 360 (441)
Q Consensus 288 ll~~~~~~~~------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~-a~~~~~~m~ 360 (441)
-.....+.++ ++++.+.++.+.... +-|... |+-.-..+.+.|+... +..+..++.
T Consensus 186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~Sa----------------W~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPST----------------WNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHH----------------HHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccH----------------HHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 7777777776 888888888888754 224444 5555555555555333 455666554
Q ss_pred HcC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 036107 361 EDS--CKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394 (441)
Q Consensus 361 ~~g--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~ 394 (441)
+.+ -..+...+..+...+.+.|+.++|.++++.+
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 432 1346677888888888888888887755543
No 105
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.41 E-value=3.4e-05 Score=65.38 Aligned_cols=130 Identities=12% Similarity=-0.031 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258 (441)
Q Consensus 179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 258 (441)
..+..+-..+...|++++|.+.|++.. .|+...|..+...|.+.|++++|.+.|++..+.. +.+...|..+-..+.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 345556677889999999999998873 5688899999999999999999999999988753 346678999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107 259 REKDFRKVDYTLKEMQEKGCK--------------P-SVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312 (441)
Q Consensus 259 ~~g~~~~a~~l~~~m~~~g~~--------------p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 312 (441)
..|++++|...|++..+.... | ....+..+..++.+.|++++|...|+...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999875321 1 23778889999999999999999999998864
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.41 E-value=3.5e-05 Score=65.65 Aligned_cols=176 Identities=11% Similarity=-0.042 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcC-
Q 036107 148 LMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR- 226 (441)
Q Consensus 148 ~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~- 226 (441)
+|.+.|++..+.+ ++..+..+-..|...+++++|.+.|++.-+. -+...+..|-..|.. +
T Consensus 4 eA~~~~~~aa~~g----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g 64 (212)
T 3rjv_A 4 EPGSQYQQQAEAG----------------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NP 64 (212)
T ss_dssp CTTHHHHHHHHTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-ST
T ss_pred hHHHHHHHHHHCC----------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CC
Confidence 4667777777766 8889999999999999999999999987432 245667777777777 6
Q ss_pred ---CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----
Q 036107 227 ---KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----EKDFRKVDYTLKEMQEKGCK-PSVITCTIVMHALEK---- 294 (441)
Q Consensus 227 ---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~-p~~~~~~~ll~~~~~---- 294 (441)
++++|.++|++..+.| +...+..|-..|.. .+++++|...|++..+.|.. .+...+..|-..|..
T Consensus 65 ~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~ 141 (212)
T 3rjv_A 65 QQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHG 141 (212)
T ss_dssp TSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSS
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCC
Confidence 8999999999998764 66777777777776 78999999999998887642 126778888888888
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhc------CChhHHHHHHHHHHHcC
Q 036107 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR------SEEGNALKLRQKIEEDS 363 (441)
Q Consensus 295 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~------g~~~~a~~~~~~m~~~g 363 (441)
.+++++|...|+...+.+-.+ .. +..|-..|... .+.++|+..|++..+.|
T Consensus 142 ~~d~~~A~~~~~~A~~~~~~~--~a----------------~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSSLSRTG--YA----------------EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SCCHHHHHHHHHHHHHTSCTT--HH----------------HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCH--HH----------------HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 889999999999998862222 22 44444444432 27889999998887776
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.41 E-value=2.2e-05 Score=66.92 Aligned_cols=164 Identities=12% Similarity=-0.016 Sum_probs=130.8
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcC----CHHHHHHHHHHh
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN----SVAHAYKVFLKF 204 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~~ 204 (441)
++.++..+-..|...+++++|.+.|++..+.+ ++..+..|-..|.. + +.++|.+.|++.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----------------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----------------DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----------------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----------------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 77888888888888999999999999988876 77888888888887 6 899999999887
Q ss_pred hhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 036107 205 KDCISLSSQIFDVLIHGWCK----TRKSDYAQKAMKEMFQHGFS-PDGVSYTCFIEHYCR----EKDFRKVDYTLKEMQE 275 (441)
Q Consensus 205 ~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~ 275 (441)
-+. -+...+..|-..|.. .+++++|.++|++..+.|.. .+...+..|-..|.. .+++++|...|++..+
T Consensus 80 ~~~--g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 80 VEA--GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHT--TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHC--CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 431 355667777777776 88999999999999887532 126778888888888 7899999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHhhCCC
Q 036107 276 KGCKPSVITCTIVMHALEKA-K-----QIYEALKVYEKMKSDDC 313 (441)
Q Consensus 276 ~g~~p~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~m~~~g~ 313 (441)
.+ .+...+..|-..|... | ++++|...|+...+.|.
T Consensus 158 ~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 158 LS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp TS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred cC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 62 2344666676777653 3 89999999999988774
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.40 E-value=1.1e-05 Score=72.47 Aligned_cols=165 Identities=10% Similarity=-0.022 Sum_probs=129.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHH-H
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFI-E 255 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li-~ 255 (441)
+...+..+-..+.+.|++++|...|++.-...+-+...+..+...+.+.|++++|...|++.... .|+........ .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 44566777788899999999999999985545567788999999999999999999999998764 46554333322 2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCccc
Q 036107 256 HYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT-DTSFYSSLIFILSKAVRFL 334 (441)
Q Consensus 256 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~ 334 (441)
.+.+.++.++|...+++..+... .+...+..+-..+...|++++|...|.++.+..-.. +. .
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~----------------~ 256 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG----------------Q 256 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG----------------H
T ss_pred HHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc----------------h
Confidence 36677888889999998877643 368889999999999999999999999998854221 12 2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 036107 335 IYNTMISSACVRSEEGNALKLRQKIE 360 (441)
Q Consensus 335 ~~~~li~~~~~~g~~~~a~~~~~~m~ 360 (441)
.+..+...|...|+.++|...+++-.
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 37888888888898899988887654
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.40 E-value=4.4e-05 Score=64.69 Aligned_cols=129 Identities=8% Similarity=-0.130 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036107 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALE 293 (441)
Q Consensus 214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 293 (441)
.+..+-..+...|++++|.+.|++.. .|+...|..+...+.+.|++++|...|++..+.. +.+...|..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556677889999999999999874 5788999999999999999999999999988764 346788999999999
Q ss_pred hcCCHHHHHHHHHHHhhCCC--------------CCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHH
Q 036107 294 KAKQIYEALKVYEKMKSDDC--------------LTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359 (441)
Q Consensus 294 ~~~~~~~a~~~~~~m~~~g~--------------~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m 359 (441)
..|++++|...|+...+..- .|+.. ..|..+...|...|++++|.+.|++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC---------------EVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHH---------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccch---------------HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999987432 12111 23788888999999999999999998
Q ss_pred HHc
Q 036107 360 EED 362 (441)
Q Consensus 360 ~~~ 362 (441)
.+.
T Consensus 148 l~~ 150 (213)
T 1hh8_A 148 TSM 150 (213)
T ss_dssp HTT
T ss_pred HHc
Confidence 865
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.40 E-value=9.5e-06 Score=80.43 Aligned_cols=154 Identities=7% Similarity=-0.082 Sum_probs=113.5
Q ss_pred cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036107 191 RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270 (441)
Q Consensus 191 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~ 270 (441)
.|++++|.+.|++.-+..+.+...+..+-..|.+.|++++|.+.|++..+.. +.+...|..+-..+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999988755445567889999999999999999999999998753 235778999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhc---C
Q 036107 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVR---S 347 (441)
Q Consensus 271 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~---g 347 (441)
++..+... -+...+..+..++.+.|++++|.+.|++..+..- .+... +..+...+... |
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~----------------~~~l~~~~~~~~~~g 142 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYI----------------TAQLLNWRRRLCDWR 142 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH----------------HHHHHHHHHHTTCCT
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHH----------------HHHHHHHHHHhhccc
Confidence 99987643 3678999999999999999999999999887532 22333 67777788888 9
Q ss_pred ChhHHHHHHHHHHHcC
Q 036107 348 EEGNALKLRQKIEEDS 363 (441)
Q Consensus 348 ~~~~a~~~~~~m~~~g 363 (441)
+.++|.+.+++..+.+
T Consensus 143 ~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQG 158 (568)
T ss_dssp THHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcC
Confidence 9999999999987654
No 111
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.39 E-value=3.1e-06 Score=85.83 Aligned_cols=153 Identities=8% Similarity=-0.034 Sum_probs=130.8
Q ss_pred HcCCChhHHHHHHHHHH--------HhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcH
Q 036107 141 GKSKKFGLMWELVKEID--------ELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS 212 (441)
Q Consensus 141 ~~~~~~~~a~~l~~~m~--------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 212 (441)
...|++++|++.+++.. +.. |. +...+..+...+.+.|++++|.+.|++.-...+.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~---p~-----------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 467 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF---SE-----------SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW 467 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC---TT-----------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc---cc-----------chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH
Confidence 67899999999999987 322 11 567888889999999999999999999855445677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036107 213 QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291 (441)
Q Consensus 213 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 291 (441)
..|..+-.+|.+.|++++|.+.|++..+. .| +...|..+-.++.+.|++++ .+.|++..+..- -+...|..+-.+
T Consensus 468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~ 543 (681)
T 2pzi_A 468 RLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARA 543 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHH
Confidence 88999999999999999999999999874 34 56788899999999999999 999999987643 267889999999
Q ss_pred HHhcCCHHHHHHHHHHHhhC
Q 036107 292 LEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 292 ~~~~~~~~~a~~~~~~m~~~ 311 (441)
+.+.|++++|.+.|++..+.
T Consensus 544 ~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTT
T ss_pred HHHcCCHHHHHHHHHhhccc
Confidence 99999999999999988875
No 112
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.36 E-value=7.6e-06 Score=68.76 Aligned_cols=160 Identities=12% Similarity=-0.041 Sum_probs=114.9
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCC-CHhhHHHHHHHHHhcCCH
Q 036107 189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ----HGFSP-DGVSYTCFIEHYCREKDF 263 (441)
Q Consensus 189 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~g~~ 263 (441)
...|++++|.++++.+.........++..+-..+...|++++|...+++... .|..| ...++..+-..+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 4679999999966655443335677888999999999999999999988875 22222 346788888899999999
Q ss_pred HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCccchH
Q 036107 264 RKVDYTLKEMQEK----GCKP--SVITCTIVMHALEKAKQIYEALKVYEKMKSDDC-LTDTSFYSSLIFILSKAVRFLIY 336 (441)
Q Consensus 264 ~~a~~l~~~m~~~----g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~~ 336 (441)
++|...+++..+. +-.| ....+..+-..+...|++++|...+++..+..- ..+..... .++
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------------~~~ 150 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA------------CAF 150 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH------------HHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH------------HHH
Confidence 9999999987553 3122 245678888899999999999999998764210 11111100 236
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 036107 337 NTMISSACVRSEEGNALKLRQKIE 360 (441)
Q Consensus 337 ~~li~~~~~~g~~~~a~~~~~~m~ 360 (441)
..+-..+...|++++|.+.+++..
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHH
Confidence 777788888999999998888764
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.36 E-value=3e-06 Score=67.97 Aligned_cols=142 Identities=11% Similarity=-0.075 Sum_probs=105.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 036107 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV 266 (441)
Q Consensus 187 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 266 (441)
.+...|++++|++.+.......+-+...+-.+-..|.+.|++++|.+.|++..+.. +-+..+|..+-..+.+.|++++|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 34456889999999987743323344556678889999999999999999998743 23578899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 036107 267 DYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKV-YEKMKSDDCLTDTSFYSSLIFILSKAV 331 (441)
Q Consensus 267 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g 331 (441)
...|++..+... -+...|..+...|.+.|+++++.+. ++...+.. +-+..+|...-..+.+.|
T Consensus 85 ~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 999999988643 2678899999999999999876655 57776642 224555544444444443
No 114
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.34 E-value=2.5e-05 Score=59.35 Aligned_cols=98 Identities=12% Similarity=0.106 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY 257 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 257 (441)
...+..+...+...|++++|.+.|++.....+.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 34455555556666666666666655533233344555555556666666666666666555432 12344555555555
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 036107 258 CREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 258 ~~~g~~~~a~~l~~~m~~~ 276 (441)
...|++++|...|+++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5556666666665555443
No 115
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.34 E-value=1.1e-05 Score=64.59 Aligned_cols=143 Identities=12% Similarity=0.016 Sum_probs=94.1
Q ss_pred HHhcCCChHHHHHHHhhhhhHhhhhcCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhc
Q 036107 98 LRKRYPSPDKVVEALKCFCFTWAKTQTGYMHT-PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRL 176 (441)
Q Consensus 98 l~~~~~~~g~~~~A~~~~~~~~~~~~~g~~p~-~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~ 176 (441)
|..++.+.|++++|+..+... ....|+ ...+-.+-..|.+.|++++|.+.|++..+..|.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a-----~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-------------- 63 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGS-----TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-------------- 63 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHH-----SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred hHHHHHHcChHHHHHHHHHHh-----cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------
Confidence 445677888888888877422 112222 334556677788888888888888888775532
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHH-HHHHhhCCCCC-CHhhHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKA-MKEMFQHGFSP-DGVSYTCFI 254 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~g~~p-~~~~~~~li 254 (441)
+..+|..+-..+.+.|++++|...|+..-+-.+-+...|..+-..|.+.|++++|.+. +++..+. .| +..+|...-
T Consensus 64 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~ 141 (150)
T 4ga2_A 64 DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKE 141 (150)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHH
Confidence 6778888888888888888888888877443345667778888888888887665554 4665552 34 345565555
Q ss_pred HHHHhcC
Q 036107 255 EHYCREK 261 (441)
Q Consensus 255 ~~~~~~g 261 (441)
..+...|
T Consensus 142 ~ll~~~G 148 (150)
T 4ga2_A 142 QLLDCEG 148 (150)
T ss_dssp HHHHTCC
T ss_pred HHHHHhC
Confidence 5555554
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.34 E-value=2.2e-05 Score=70.60 Aligned_cols=171 Identities=9% Similarity=-0.012 Sum_probs=125.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--CCC
Q 036107 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CIS 209 (441)
Q Consensus 132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~ 209 (441)
.+...+..+...|++++|.+++++.....+..+.... -...+..+...+...|++++|+..|+..-. .-.
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~ 148 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ--------FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHH--------HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHH--------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc
Confidence 3444577889999999999999998874422221100 012344566677788899999999988732 111
Q ss_pred Cc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh----C-CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 036107 210 LS----SQIFDVLIHGWCKTRKSDYAQKAMKEMFQ----H-GFSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEK--- 276 (441)
Q Consensus 210 ~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~-g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--- 276 (441)
++ ..+++.+-..|...|++++|...|++..+ . +..+. ..+|..+...|.+.|++++|...+++..+.
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 22 34689999999999999999999999873 1 22222 347889999999999999999999987542
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHhh
Q 036107 277 -GCKPS-VITCTIVMHALEKAKQ-IYEALKVYEKMKS 310 (441)
Q Consensus 277 -g~~p~-~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~ 310 (441)
+..+. ..+|..+-.+|.+.|+ +++|.+.|++...
T Consensus 229 ~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 33333 6788999999999995 6999998887654
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.33 E-value=1.4e-05 Score=72.46 Aligned_cols=197 Identities=8% Similarity=0.041 Sum_probs=131.4
Q ss_pred HHHHHhcCCChHHHHHHHhhhhhHhhhh-cCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHH
Q 036107 95 SEILRKRYPSPDKVVEALKCFCFTWAKT-QTGYMHT-PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTV 172 (441)
Q Consensus 95 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~g~~p~-~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~ 172 (441)
++.....|...|++++|+..|....... ..+-.+. ..+|+.+...|.+.|++++|++.|++........-...
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~----- 113 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD----- 113 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHH-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHH-----
Confidence 3333445666778888888776332221 1121111 45888999999999999999999998766421111000
Q ss_pred HhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---C-CCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C
Q 036107 173 MRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---C-ISL--SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----G 242 (441)
Q Consensus 173 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g 242 (441)
.-..++..+-..|.+ |++++|++.|++.-. . -.+ ...+++.+-..|.+.|++++|...|++..+. +
T Consensus 114 ---~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 189 (307)
T 2ifu_A 114 ---TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME 189 (307)
T ss_dssp ---HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 023567778888888 999999999987622 1 111 2457888899999999999999999988752 2
Q ss_pred CCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 036107 243 FSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS------VITCTIVMHALEKAKQIYEALKV 304 (441)
Q Consensus 243 ~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~------~~~~~~ll~~~~~~~~~~~a~~~ 304 (441)
..+. ...+..+...+...|++++|...|++.. . .|+ ......++.++ ..|+.+...++
T Consensus 190 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 190 NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 2122 2366677777888899999999999987 3 222 22345556655 56777666653
No 118
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.33 E-value=9.7e-05 Score=74.07 Aligned_cols=217 Identities=12% Similarity=0.062 Sum_probs=152.2
Q ss_pred CHHHHHHHHHHHHcCCChhHHH-HHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 036107 129 TPETYNAMVEALGKSKKFGLMW-ELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC 207 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~-~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 207 (441)
+...|-.....+.+.|+.++|. ++|+......|. +...+-..+...-+.|+++.|.++|+.+...
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~--------------s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN--------------SAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4455555555566667777786 888877653211 4555667778888899999999999887431
Q ss_pred C----------CC------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CC-CCCHhhHHHHHHHHHh-cCC
Q 036107 208 I----------SL------------SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH-GF-SPDGVSYTCFIEHYCR-EKD 262 (441)
Q Consensus 208 ~----------~~------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~-~p~~~~~~~li~~~~~-~g~ 262 (441)
+ .| ...+|-..+....+.|+.+.|..+|.+..+. +. .+......+.+. .+ .++
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE--~~~~~d 485 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE--YHISKD 485 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH--HTTTSC
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--HHhCCC
Confidence 1 13 2346888888888889999999999999875 21 122222223333 23 355
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHH
Q 036107 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISS 342 (441)
Q Consensus 263 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~ 342 (441)
.+.|.++|+...+. .+-+...|...+......|+.+.|..+|+........+.... ..|...+.-
T Consensus 486 ~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~--------------~lw~~~~~f 550 (679)
T 4e6h_A 486 TKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK--------------MIFQKVIFF 550 (679)
T ss_dssp CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH--------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH--------------HHHHHHHHH
Confidence 89999999998776 333566677888888889999999999999988654322211 348888888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036107 343 ACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC 378 (441)
Q Consensus 343 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 378 (441)
-.+.|+.+.+.++.+++.+. .|+......+++-|
T Consensus 551 E~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 551 ESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 88999999999999999876 45555555555544
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.32 E-value=3.1e-05 Score=62.53 Aligned_cols=132 Identities=11% Similarity=0.010 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 256 (441)
....+..+...+...|++++|...|+......+.+...+..+...+...|++++|.+.|++..+.. +.+...|..+...
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 346777788888999999999999998855445678889999999999999999999999988753 2357788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 257 YCREKDFRKVDYTLKEMQEKGCKPSVITC--TIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
+...|++++|...|++..+.... +...+ ..+...+.+.|++++|...+....+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999998876432 44444 3444457788999999999887643
No 120
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.32 E-value=4.9e-06 Score=84.36 Aligned_cols=177 Identities=12% Similarity=-0.035 Sum_probs=137.8
Q ss_pred CChHHHHHHHhhhhhHhh---hhc-CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCH
Q 036107 103 PSPDKVVEALKCFCFTWA---KTQ-TGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDT 178 (441)
Q Consensus 103 ~~~g~~~~A~~~~~~~~~---~~~-~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~ 178 (441)
...|+.++|++.++.... ... .....+...|..+-.++.+.|++++|.+.|++..+..+. +.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--------------~~ 467 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW--------------RW 467 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC--------------CH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc--------------hH
Confidence 667888999998864330 001 122235678889999999999999999999999886533 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258 (441)
Q Consensus 179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 258 (441)
..+..+-.++...|++++|.+.|++.-...+-+...|..+-.+|.+.|++++ .+.|++..+.. +-+...|..+-.++.
T Consensus 468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~ 545 (681)
T 2pzi_A 468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARS 545 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHH
Confidence 8899999999999999999999999855445567789999999999999999 99999988743 225678999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 036107 259 REKDFRKVDYTLKEMQEKGCKPS-VITCTIVMHALEKAKQ 297 (441)
Q Consensus 259 ~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~ 297 (441)
+.|++++|.+.|++..+. .|+ ...+..+..++...++
T Consensus 546 ~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 546 AEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999999999999988764 344 5677777777766554
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.31 E-value=3.2e-05 Score=62.44 Aligned_cols=131 Identities=8% Similarity=-0.061 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 209 (441)
...|..+-..+...|++++|...|++.....+. +..++..+...+...|++++|.+.+++.....+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 78 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS--------------NAIYYGNRSLAYLRTECYGYALGDATRAIELDK 78 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 456778888899999999999999998885522 678888899999999999999999998855455
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYT--CFIEHYCREKDFRKVDYTLKEMQE 275 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~l~~~m~~ 275 (441)
.+...+..+...+.+.|++++|.+.|++..+... .+...+. .+...+.+.|++++|.+.+....+
T Consensus 79 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 6778899999999999999999999999987421 2344443 344447788999999999887643
No 122
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.31 E-value=8e-06 Score=68.62 Aligned_cols=156 Identities=8% Similarity=-0.048 Sum_probs=113.4
Q ss_pred HcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh------CCCCcHHH
Q 036107 141 GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD------CISLSSQI 214 (441)
Q Consensus 141 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~ 214 (441)
...|++++|.++++.... . .. ....++..+-..+...|++++|...+++... .......+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~--~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 68 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-H--PA-----------TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRA 68 (203)
T ss_dssp ----CHHHHHHHHHHHHT-S--TT-----------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-C--hH-----------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 467899999995555533 1 11 1467888889999999999999999988632 22234556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHH
Q 036107 215 FDVLIHGWCKTRKSDYAQKAMKEMFQH----GFSP--DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GCKP-SVI 283 (441)
Q Consensus 215 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~ 283 (441)
+..+-..|...|++++|.+.+++..+. |-.| ....+..+-..+...|++++|...+++..+. +... -..
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 788888999999999999999887652 2111 2356788888999999999999999987642 2111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 284 TCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
++..+-..+...|++++|.+.+++..+
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 567788889999999999999987765
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.29 E-value=3.6e-05 Score=58.49 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 209 (441)
...|..+...+...|++++|.+.++++....+. +..++..+...+.+.|++++|...|+.+....+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 74 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 568888899999999999999999999885422 667888999999999999999999999855455
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 258 (441)
.+..++..+...+.+.|++++|.+.|+++.+.. +.+...+..+-..+.
T Consensus 75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 677889999999999999999999999998742 123444444444443
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.23 E-value=3.8e-05 Score=58.87 Aligned_cols=119 Identities=9% Similarity=-0.054 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 256 (441)
+...+..+...+...|++++|.+.|+......+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 345566666666677777777777766643334455666666667777777777777777666532 2235566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 297 (441)
+...|++++|...|++..+... .+...+..+..++.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 6777777777777776655432 245555555555555554
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.21 E-value=0.00064 Score=60.86 Aligned_cols=168 Identities=11% Similarity=-0.020 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCC--
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSS------QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF---SPD-- 246 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~-- 246 (441)
...+...+..+...|++++|.+.+.......+... ..+..+...+...|++++|...|++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34556678888999999999999987633212221 2234455667888999999999998875321 122
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHH---c-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCC
Q 036107 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQE---K-GCKP--SVITCTIVMHALEKAKQIYEALKVYEKMKSD----DCLTD 316 (441)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~-g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~ 316 (441)
..+|+.+-..|...|++++|...|++..+ . +..+ ...+|..+...|.+.|++++|...+++..+. +....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45888999999999999999999999863 2 2111 1258889999999999999999999987652 21111
Q ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHH-HHHHHHHH
Q 036107 317 TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNA-LKLRQKIE 360 (441)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 360 (441)
.. .+|..+-..|.+.|+.++| ...+++..
T Consensus 235 ~~---------------~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IG---------------QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HH---------------HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HH---------------HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 11 2377788888999999999 67676654
No 126
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.21 E-value=0.0007 Score=60.86 Aligned_cols=223 Identities=9% Similarity=-0.070 Sum_probs=161.0
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH----Hhc--
Q 036107 189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR--KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY----CRE-- 260 (441)
Q Consensus 189 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~----~~~-- 260 (441)
.+....++|+++++.+-.-.+-+...|+.--..+...| ++++++++++.+..... -+..+|+.--..+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 44 KAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTT
T ss_pred HcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccc
Confidence 34455578999998885444556667888777777888 99999999999987532 2445666554444 444
Q ss_pred -CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHH
Q 036107 261 -KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY--EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337 (441)
Q Consensus 261 -g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~ 337 (441)
+++++++++++.+.+...+ |..+|+.---.+.+.|+++ ++.+.++.+.+.... |... |+
T Consensus 123 ~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sA----------------W~ 184 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSA----------------WS 184 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHH----------------HH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHH----------------HH
Confidence 7899999999999987554 8889988888888899988 999999999986532 4444 44
Q ss_pred HHHHHHHhcCC------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHCC--CCCCHHH
Q 036107 338 TMISSACVRSE------EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD-GMLVLNLMREMLSKG--IVPQEST 408 (441)
Q Consensus 338 ~li~~~~~~g~------~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-a~~~~~~~~~m~~~~--~~p~~~~ 408 (441)
.--..+...|. ++++++.++++.... .-|...|+-.-..+.+.|+... +.. ...+..+.+ -..+...
T Consensus 185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~a 260 (306)
T 3dra_A 185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEE---FSLQFVDLEKDQVTSSFA 260 (306)
T ss_dssp HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHH---HHHTTEEGGGTEESCHHH
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHH---HHHHHHhccCCCCCCHHH
Confidence 43333344444 788999999888653 4466677777777777777544 333 333322211 2347778
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHH
Q 036107 409 HKMLAEELEKKSLGNAKERIDELLTH 434 (441)
Q Consensus 409 ~~~ll~~~~~~g~~~~a~~~~~~m~~ 434 (441)
+..+.+.+.+.|+.++|.++++.+..
T Consensus 261 l~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 261 LETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999875
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.15 E-value=5.9e-05 Score=57.77 Aligned_cols=120 Identities=10% Similarity=-0.049 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 208 (441)
+...|..+...+...|++++|.+.|++.....+. +...+..+...+...|++++|.+.++......
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 76 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA--------------NAVYFCNRAAAYSKLGNYAGAVQDCERAICID 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--------------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC
Confidence 4567888888999999999999999998875422 56788888999999999999999999885544
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 263 (441)
+.+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...+.+.|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 77 PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 5567788899999999999999999999988753 22566777777777776653
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.14 E-value=6.2e-05 Score=58.04 Aligned_cols=98 Identities=7% Similarity=-0.110 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 208 (441)
+...|..+...+.+.|++++|.+.|++..+..+. +...+..+...+...|++++|...+++.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 80 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--------------DAKLYSNRAACYTKLLEFQLALKDCEECIQLE 80 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 3455666666666666666666666666553311 44555555555666666666666665553323
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
+.+...+..+...+.+.|++++|.+.|++..+
T Consensus 81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 81 PTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33445555555555566666666666655544
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.13 E-value=0.00023 Score=62.73 Aligned_cols=197 Identities=11% Similarity=-0.032 Sum_probs=133.8
Q ss_pred cCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHH-------HHHHHhcCCHHHHHHHHHHh-h---h--CC
Q 036107 142 KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVL-------MDTLVKRNSVAHAYKVFLKF-K---D--CI 208 (441)
Q Consensus 142 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~~-~---~--~~ 208 (441)
..++...|.+.|.+..+..+. ....|..+ ...+.+.++..+++..+..- . . +.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~--------------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES--------------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred cCCCHHHHHHHHHHHHHhChh--------------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 579999999999999997655 34455555 34444444444444444332 1 1 00
Q ss_pred CCc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107 209 SLS---------------SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273 (441)
Q Consensus 209 ~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 273 (441)
..+ ....-.+...+...|++++|.++|+.+...+ |+......+-..+.+.+++++|+..|+..
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a 161 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSA 161 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 111 1234456677888999999999999998754 54445555666888999999999999855
Q ss_pred HHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhH
Q 036107 274 QEKGCKPS--VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGN 351 (441)
Q Consensus 274 ~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~ 351 (441)
.+.. .|. ...+..+-.++.+.|++++|+..|++.......|.... ..+...-.++.+.|+.++
T Consensus 162 ~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~--------------da~~~~glaL~~lGr~de 226 (282)
T 4f3v_A 162 GKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACAR--------------AIAWYLAMARRSQGNESA 226 (282)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHH--------------HHHHHHHHHHHHHTCHHH
T ss_pred hccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccH--------------HHHHHHHHHHHHcCCHHH
Confidence 4432 111 23677788899999999999999999886544354211 125566677888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHH
Q 036107 352 ALKLRQKIEEDSCKPDCETH 371 (441)
Q Consensus 352 a~~~~~~m~~~g~~p~~~t~ 371 (441)
|..+|+++... .|+....
T Consensus 227 A~~~l~~a~a~--~P~~~~~ 244 (282)
T 4f3v_A 227 AVALLEWLQTT--HPEPKVA 244 (282)
T ss_dssp HHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHhc--CCcHHHH
Confidence 99999999875 5553333
No 130
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.12 E-value=0.00042 Score=69.48 Aligned_cols=230 Identities=10% Similarity=0.022 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHcCCC-------hhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHH-HHHH
Q 036107 131 ETYNAMVEALGKSKK-------FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAY-KVFL 202 (441)
Q Consensus 131 ~~y~~li~~~~~~~~-------~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~ 202 (441)
..|...|.---..+. .+.+..+|++....-+ .....|-....-+.+.|+.++|. ++|+
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p--------------~~~~lW~~ya~~~~~~~~~~~a~r~il~ 368 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC--------------FAPEIWFNMANYQGEKNTDSTVITKYLK 368 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT--------------TCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC--------------CCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 456666654443321 2334566776665331 16677777777888889988996 9998
Q ss_pred HhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---------CCC------------HhhHHHHHHHHHhcC
Q 036107 203 KFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF---------SPD------------GVSYTCFIEHYCREK 261 (441)
Q Consensus 203 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~li~~~~~~g 261 (441)
+.-..++.+...|-..+...-+.|+++.|.++|+++..... .|+ ..+|...+....+.|
T Consensus 369 rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 369 LGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 87555666777788888888899999999999999876310 132 236777788778888
Q ss_pred CHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHH
Q 036107 262 DFRKVDYTLKEMQEK-G-CKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTM 339 (441)
Q Consensus 262 ~~~~a~~l~~~m~~~-g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~l 339 (441)
+.+.|.++|....+. + ..+......+.+.-.. .++++.|.++|+...+. ++-+... |...
T Consensus 449 ~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~----------------w~~y 510 (679)
T 4e6h_A 449 GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEY----------------INKY 510 (679)
T ss_dssp CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHH----------------HHHH
T ss_pred CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHH----------------HHHH
Confidence 899999999998775 2 2233333333333221 34588999999988775 2223322 6666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhhHHHHHH
Q 036107 340 ISSACVRSEEGNALKLRQKIEEDSCKP--DCETHARSLKMCCHKKRMKDGMLVLN 392 (441)
Q Consensus 340 i~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~ 392 (441)
+......|+.+.|-.+|++.......+ ....|...+.-=.+.|+.+.+.++.+
T Consensus 511 ~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 511 LDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp HHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666677788899999999887653222 23467777777778888888877544
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.11 E-value=6.6e-05 Score=60.03 Aligned_cols=97 Identities=4% Similarity=-0.144 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 209 (441)
...|..+-..+.+.|++++|.+.|++.....|. +...|..+-.++...|++++|++.|++.-.-.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~--------------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY--------------NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 345556666666777777777777776665422 556666666677777777777777766643334
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
.+...|..+-.+|.+.|++++|.+.|++..+
T Consensus 102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555666666667777777777777766665
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.11 E-value=5.6e-05 Score=58.27 Aligned_cols=97 Identities=12% Similarity=0.039 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY 257 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 257 (441)
...+..+...+.+.|++++|.+.|++.-...+.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 34444445555555555555555555433223344444555555555555555555555544421 11334444444455
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 036107 258 CREKDFRKVDYTLKEMQE 275 (441)
Q Consensus 258 ~~~g~~~~a~~l~~~m~~ 275 (441)
.+.|++++|.+.|++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555554443
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.09 E-value=2.9e-05 Score=63.78 Aligned_cols=121 Identities=3% Similarity=0.061 Sum_probs=80.4
Q ss_pred HcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHH
Q 036107 141 GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIH 220 (441)
Q Consensus 141 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 220 (441)
...|++++|.+.+++.....+. +...+..+...+...|++++|...|++.....+.+...+..+..
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~--------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 86 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ--------------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALAT 86 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCC--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3457777788777777664422 56677777778888888888888887764333445666666666
Q ss_pred H-HHhcCCH--HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107 221 G-WCKTRKS--DYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 221 ~-~~~~~~~--~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
. +...|++ ++|...|++..+.. +.+...+..+...+...|++++|...|++..+.
T Consensus 87 ~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 87 VLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6 6677777 88888887777642 123566667777777778888888877777664
No 134
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.08 E-value=0.00012 Score=56.51 Aligned_cols=95 Identities=13% Similarity=-0.079 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc
Q 036107 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS 211 (441)
Q Consensus 132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 211 (441)
.|...-..+.+.|++++|++.|++..+..+. +...|..+-.++.+.|++++|++.|++.-.-.+.+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 80 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE--------------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF 80 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence 4555555666666666666666665554321 45556666666666666666666665553323344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 212 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
...|..+-.+|...|++++|.+.|++..+
T Consensus 81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 81 IKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555556666666666666666665554
No 135
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.07 E-value=0.0027 Score=57.83 Aligned_cols=244 Identities=10% Similarity=-0.028 Sum_probs=155.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCC
Q 036107 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRN-SVAHAYKVFLKFKDCISL 210 (441)
Q Consensus 132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~ 210 (441)
.++.+-....+.+..++|+++++++....+. +..+|+.--..+...| .+++++++++.+-...+-
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~--------------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK 121 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPA--------------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK 121 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCch--------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC
Confidence 3444444455556677899999999986643 5566777666777778 599999999998666677
Q ss_pred cHHHHHHHHHHHHhc-C-CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCC
Q 036107 211 SSQIFDVLIHGWCKT-R-KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR--------KVDYTLKEMQEKGCKP 280 (441)
Q Consensus 211 ~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~a~~l~~~m~~~g~~p 280 (441)
+..+|+.--..+.+. + ++++++++++.+.+.. +.|...|+-..-...+.|.++ ++++.++++.+....
T Consensus 122 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~- 199 (349)
T 3q7a_A 122 SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR- 199 (349)
T ss_dssp CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-
T ss_pred cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-
Confidence 888888877777666 6 8899999999999754 346777776666665555555 899999999887654
Q ss_pred CHHHHHHHHHHHHhcCC-------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHH-hcC-----
Q 036107 281 SVITCTIVMHALEKAKQ-------IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC-VRS----- 347 (441)
Q Consensus 281 ~~~~~~~ll~~~~~~~~-------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~-~~g----- 347 (441)
|...|+..-..+.+.++ ++++.+.++++.... +-|...|+-+-..+.+.|+. .+.++.+.- ..|
T Consensus 200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~--~~~~~~~~~~~~~~~~~~ 276 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP--LVPILPAILPYTASKLNP 276 (349)
T ss_dssp CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC--SGGGHHHHGGGTC-----
T ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC--cccccccccccccccccc
Confidence 88899988888888776 688888888887753 33555544333333333321 000000000 000
Q ss_pred ChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 036107 348 EEGNALKLRQKIEEDS-----CKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394 (441)
Q Consensus 348 ~~~~a~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~ 394 (441)
......+...++...+ -.++......+.+.|...|+.++|.++++.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l 328 (349)
T 3q7a_A 277 DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKL 328 (349)
T ss_dssp ---------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 0111222222222111 1356667777777888878777776655444
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.06 E-value=5.7e-05 Score=61.98 Aligned_cols=122 Identities=7% Similarity=0.075 Sum_probs=97.9
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH-HHhcCCH--HH
Q 036107 189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH-YCREKDF--RK 265 (441)
Q Consensus 189 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~--~~ 265 (441)
...|++++|...++..-...+.+...|..+...|...|++++|...|++..+.. +.+...+..+... +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 356889999999988755445677889999999999999999999999988742 2356677777777 7789998 99
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312 (441)
Q Consensus 266 a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 312 (441)
|...|++..+... -+...+..+...+...|++++|...|+...+..
T Consensus 100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999988643 357888889999999999999999999998854
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.01 E-value=9.2e-05 Score=59.18 Aligned_cols=94 Identities=7% Similarity=-0.043 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036107 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294 (441)
Q Consensus 215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 294 (441)
+..+-..+.+.|++++|...|++..... +-+...|..+-.++...|++++|...|++..+... -+...|..+-.+|.+
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHH
Confidence 4444444445555555555555544421 11334444444555555555555555555444321 133444445555555
Q ss_pred cCCHHHHHHHHHHHhh
Q 036107 295 AKQIYEALKVYEKMKS 310 (441)
Q Consensus 295 ~~~~~~a~~~~~~m~~ 310 (441)
.|++++|...|+...+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.00 E-value=0.00011 Score=65.62 Aligned_cols=162 Identities=7% Similarity=-0.080 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL 210 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 210 (441)
..+..+-..+.+.|++++|.+.|++.....+. +...+..+-..+.+.|++++|...++......+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 70 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL--------------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 34444444445555555555555554443211 3444444445555555555555555444332233
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------------------------------CCCCCHhhHHHHHHHHHhc
Q 036107 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH------------------------------GFSPDGVSYTCFIEHYCRE 260 (441)
Q Consensus 211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------------------------g~~p~~~~~~~li~~~~~~ 260 (441)
+...+..+-.+|...|++++|.+.|++..+. -...+... ...+..+ ..
T Consensus 71 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~l~~l-~~ 148 (281)
T 2c2l_A 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESEL-HSYLTRL-IA 148 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHH-HHHHHHH-HH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHH-HH
Confidence 4444444445555555555555555444321 11122222 1222222 24
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhc-CCHHHHHHHHHHHhh
Q 036107 261 KDFRKVDYTLKEMQEKGCKPSVIT-CTIVMHALEKA-KQIYEALKVYEKMKS 310 (441)
Q Consensus 261 g~~~~a~~l~~~m~~~g~~p~~~~-~~~ll~~~~~~-~~~~~a~~~~~~m~~ 310 (441)
|++++|.+.++...+. .|+... ...+-..+.+. +.++++.++|....+
T Consensus 149 ~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 149 AERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5666666666555443 344332 23333333333 557777888877655
No 139
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.00 E-value=0.00024 Score=54.71 Aligned_cols=94 Identities=7% Similarity=-0.021 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 036107 181 MSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260 (441)
Q Consensus 181 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 260 (441)
+...-..+.+.|++++|++.|++.-...+.+...|..+-.+|.+.|++++|+..|++..+.. +.+...|..+-.++...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHC
Confidence 33344445555555555555554432223344445555555555555555555555544421 11234444455555555
Q ss_pred CCHHHHHHHHHHHHH
Q 036107 261 KDFRKVDYTLKEMQE 275 (441)
Q Consensus 261 g~~~~a~~l~~~m~~ 275 (441)
|++++|.+.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555444
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.98 E-value=0.0002 Score=65.68 Aligned_cols=131 Identities=11% Similarity=0.013 Sum_probs=107.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS---------------SQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 241 (441)
+...+..+-..+.+.|++++|...|++.-...+.+ ...|..+-.+|.+.|++++|...|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46778888899999999999999998874322233 578999999999999999999999999875
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHh
Q 036107 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA-LKVYEKMK 309 (441)
Q Consensus 242 g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a-~~~~~~m~ 309 (441)
. +.+...|..+-.++...|++++|...|++..+... -+...+..+..++.+.|+.+++ ...|..|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 23678899999999999999999999999987643 3677888899999999999988 44666654
No 141
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.95 E-value=0.0001 Score=56.48 Aligned_cols=98 Identities=11% Similarity=0.101 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCC----HhhHHH
Q 036107 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF--SPD----GVSYTC 252 (441)
Q Consensus 179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~~ 252 (441)
..+..+...+...|++++|...|+......+.+...+..+...+...|++++|...|++...... .++ ..+|..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34555555666666666666666665333344555566666666666666666666666554311 111 445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 036107 253 FIEHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 253 li~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
+...+...|++++|.+.|++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555566666666666666665553
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.95 E-value=0.00043 Score=51.68 Aligned_cols=96 Identities=10% Similarity=-0.046 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL 210 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 210 (441)
..|..+...+...|++++|.+.|++.....+. +...+..+...+.+.|++++|...++..-...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH--------------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 34445555555555555555555555543311 3444455555555555555555555554322233
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
+...+..+..++.+.|++++|.+.|++..+
T Consensus 71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344455555555555555555555555444
No 143
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.92 E-value=0.00013 Score=55.86 Aligned_cols=110 Identities=8% Similarity=0.011 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--- 206 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--- 206 (441)
...|..+...+...|++++|...|++.....+. +...+..+...+...|++++|...++....
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT--------------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 457888888999999999999999998886522 667888899999999999999999988733
Q ss_pred CCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 036107 207 CISLS----SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255 (441)
Q Consensus 207 ~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 255 (441)
...++ ..++..+...+.+.|++++|.+.|++..+. .|+......+-.
T Consensus 70 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 12222 677888899999999999999999999874 456555544443
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.92 E-value=3.1e-05 Score=65.00 Aligned_cols=125 Identities=13% Similarity=-0.067 Sum_probs=84.4
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC--------------HhhH
Q 036107 186 DTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS-PD--------------GVSY 250 (441)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~--------------~~~~ 250 (441)
......|+++.+.+.++.-..........+..+-..+.+.|++++|.+.|++..+..-. |+ ...|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 34445577777776665432222224445667777888889999999998888763211 10 2677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 251 TCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 251 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
..+-.++.+.|++++|...+++..+.. +.+...+..+..+|...|++++|.+.|+...+.
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 888888889999999999999887763 236778888888899999999999999888765
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.92 E-value=7.3e-05 Score=59.56 Aligned_cols=99 Identities=6% Similarity=-0.133 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290 (441)
Q Consensus 211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 290 (441)
+...+..+-..+.+.|++++|...|++..... +.+...|..+-.++...|++++|...|++..+... -+...+..+-.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 44556667777888888888888888877642 23566777777788888888888888888776532 25667777888
Q ss_pred HHHhcCCHHHHHHHHHHHhhC
Q 036107 291 ALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 291 ~~~~~~~~~~a~~~~~~m~~~ 311 (441)
+|...|++++|...|+...+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888877663
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.91 E-value=0.00055 Score=51.05 Aligned_cols=94 Identities=16% Similarity=0.044 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036107 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294 (441)
Q Consensus 215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 294 (441)
+..+...+...|++++|.+.|++..... +.+...+..+...+...|++++|...+++..+... .+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence 3444444444455555555554444321 11334444444445555555555555555444321 134444445555555
Q ss_pred cCCHHHHHHHHHHHhh
Q 036107 295 AKQIYEALKVYEKMKS 310 (441)
Q Consensus 295 ~~~~~~a~~~~~~m~~ 310 (441)
.|++++|.+.++...+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555555444
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.00038 Score=53.26 Aligned_cols=93 Identities=9% Similarity=-0.010 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 036107 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK 261 (441)
Q Consensus 182 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 261 (441)
..+-..+.+.|++++|...|++.-...+.+...|..+-.+|.+.|++++|...|++..+.. +.+...|..+-.++...|
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHh
Confidence 3333444444555555555444422223334444445555555555555555555544421 112344444555555555
Q ss_pred CHHHHHHHHHHHHH
Q 036107 262 DFRKVDYTLKEMQE 275 (441)
Q Consensus 262 ~~~~a~~l~~~m~~ 275 (441)
++++|...|++..+
T Consensus 87 ~~~~A~~~~~~al~ 100 (126)
T 3upv_A 87 EYASALETLDAART 100 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555443
No 148
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.91 E-value=0.00014 Score=53.96 Aligned_cols=95 Identities=9% Similarity=-0.010 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-
Q 036107 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL- 210 (441)
Q Consensus 132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~- 210 (441)
.|..+...+.+.|++++|...|++..+..+. +...+..+...+...|++++|.+.|++.....+.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 73 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE--------------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE 73 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc
Confidence 3444444555555555555555555543311 3344444555555555555555555544332222
Q ss_pred -cHHHHHHHHHHHHhc-CCHHHHHHHHHHHhh
Q 036107 211 -SSQIFDVLIHGWCKT-RKSDYAQKAMKEMFQ 240 (441)
Q Consensus 211 -~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~ 240 (441)
+...+..+...+.+. |++++|.+.|++...
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 74 YNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 344455555555555 555555555555544
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.91 E-value=0.00023 Score=65.28 Aligned_cols=145 Identities=11% Similarity=-0.062 Sum_probs=110.9
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHH-HHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLA-AMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC 207 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 207 (441)
+...|..+-..+.+.|++++|.+.|++.....+...... ............+|..+-.++.+.|++++|+..|++.-..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356788888999999999999999999888653321000 0000000001578899999999999999999999998554
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 036107 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKV-DYTLKEMQ 274 (441)
Q Consensus 208 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a-~~l~~~m~ 274 (441)
.+.+...|..+-.+|...|++++|...|++..+.. +-+...+..+...+.+.|+.++| ..+++.|.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999999999999999998742 22567888888899999999888 45666664
No 150
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.00045 Score=65.46 Aligned_cols=211 Identities=9% Similarity=-0.040 Sum_probs=137.3
Q ss_pred HHHHcCCChhHHHHHHHHHHHhcCCCccHHHHH---HHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCCCc
Q 036107 138 EALGKSKKFGLMWELVKEIDELSNGYVSLAAMS---TVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD---CISLS 211 (441)
Q Consensus 138 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~ 211 (441)
..+.+.|++++|.+.|.+..+..+......... .........++..+...|.+.|++++|.+.+..... .+...
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345678999999999999887542221100000 000000123577889999999999999999988732 22211
Q ss_pred --H-HHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC
Q 036107 212 --S-QIFDVLIHGWCKTRKSDYAQKAMKEMFQ----HGFSPD-GVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GCK 279 (441)
Q Consensus 212 --~-~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~ 279 (441)
. .+.+.+-..+...|+.+.|.+++.+... .+..+. ..++..+...+...|++++|..++++.... +-+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 1223333344456889999999887753 222222 457888999999999999999999987653 112
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHH
Q 036107 280 P-SVITCTIVMHALEKAKQIYEALKVYEKMKSD--DCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLR 356 (441)
Q Consensus 280 p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~ 356 (441)
+ ...+|..++..|...|++++|..+++..... .+..+..... ..+..+...+...|++++|...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~------------~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA------------ELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH------------HHHHHHHHHTTSSSCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH------------HHHHHHHHHHHHHHhHHHHHHHH
Confidence 2 2567888999999999999999999887642 1111111100 22566666677778888887777
Q ss_pred HHHH
Q 036107 357 QKIE 360 (441)
Q Consensus 357 ~~m~ 360 (441)
.+..
T Consensus 240 ~~a~ 243 (434)
T 4b4t_Q 240 FESF 243 (434)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 151
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.91 E-value=0.00024 Score=56.53 Aligned_cols=97 Identities=8% Similarity=-0.132 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 209 (441)
...+..+-..+.+.|++++|.+.|++.....+. +...|..+-.++...|++++|++.|++.-...+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--------------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 445666666777777777777777777664422 566667777777777777777777777644334
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
.+...+..+-.+|...|++++|.+.|++..+
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556667777777777777777777777665
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.87 E-value=0.00025 Score=55.78 Aligned_cols=96 Identities=10% Similarity=-0.113 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL 210 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 210 (441)
..+..+-..+.+.|++++|.+.|++.....+. +...|..+-.++.+.|++++|...|+..-...+.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY--------------DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc--------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45555666777788888888888887775422 5667777777788888888888888776443345
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
+...+..+-.+|...|++++|.+.|+...+
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566677777788888888888888877765
No 153
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.87 E-value=0.0047 Score=56.23 Aligned_cols=225 Identities=11% Similarity=-0.049 Sum_probs=152.9
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-C-CHH
Q 036107 188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR-KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE-K-DFR 264 (441)
Q Consensus 188 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~ 264 (441)
..+.+..++|+++++.+-.-.+-+..+|+.--..+...| .+++++++++.+..... -+..+|+.--..+.+. + +++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCH
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChH
Confidence 334456678999999885544566777887777777777 59999999999997643 3667888777777776 6 889
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchH
Q 036107 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIY--------EALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336 (441)
Q Consensus 265 ~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~ 336 (441)
+++++++.+.+...+ |...|+.-.-.+.+.|.++ ++.+.++++.+... -|... |
T Consensus 143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SA----------------W 204 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSA----------------W 204 (349)
T ss_dssp HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHH----------------H
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHH----------------H
Confidence 999999999887544 7888887666666666666 89999999988643 24444 5
Q ss_pred HHHHHHHHhcCC-------hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhh-----------------HHHHH
Q 036107 337 NTMISSACVRSE-------EGNALKLRQKIEEDSCKP-DCETHARSLKMCCHKKRMKD-----------------GMLVL 391 (441)
Q Consensus 337 ~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~-----------------a~~~~ 391 (441)
+---..+.+.++ ++++++.+++.... .| |...|+-+-..+.+.|+... -..+.
T Consensus 205 ~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (349)
T 3q7a_A 205 GWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVE 282 (349)
T ss_dssp HHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----------
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHH
Confidence 544444444444 57888888887764 44 44556554445555554310 01112
Q ss_pred HHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 036107 392 NLMREMLSKG-----IVPQESTHKMLAEELEKKSLGNAKERIDELLT 433 (441)
Q Consensus 392 ~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 433 (441)
+...++...+ -.++......|.+.|...|+.++|.++++.+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 283 AFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp ---CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2222221111 14677889999999999999999999999985
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.86 E-value=0.00015 Score=53.76 Aligned_cols=96 Identities=6% Similarity=-0.124 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Q 036107 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK-PSVITCTIVMHALE 293 (441)
Q Consensus 215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~~~~~ll~~~~ 293 (441)
+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.... .+...+..+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 4444444555555555555555544321 123344555555555555555555555555443210 03445555555555
Q ss_pred hc-CCHHHHHHHHHHHhhC
Q 036107 294 KA-KQIYEALKVYEKMKSD 311 (441)
Q Consensus 294 ~~-~~~~~a~~~~~~m~~~ 311 (441)
+. |++++|.+.+....+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGG
T ss_pred HHhCCHHHHHHHHHHHhhc
Confidence 55 5555555555555543
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.85 E-value=0.00048 Score=53.38 Aligned_cols=96 Identities=6% Similarity=-0.008 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHY 257 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 257 (441)
...+..+-..+...|++++|...|+..-...+.+...|..+..++...|++++|...|++..+.. +.+...|..+-.++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 33444444444444444444444444322222333444444444444444444444444444321 11234444444444
Q ss_pred HhcCCHHHHHHHHHHHH
Q 036107 258 CREKDFRKVDYTLKEMQ 274 (441)
Q Consensus 258 ~~~g~~~~a~~l~~~m~ 274 (441)
...|++++|...|++..
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 55555555555554443
No 156
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.0015 Score=61.71 Aligned_cols=164 Identities=10% Similarity=-0.093 Sum_probs=76.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCC--c---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCH
Q 036107 186 DTLVKRNSVAHAYKVFLKFKDCISL--S---------------SQIFDVLIHGWCKTRKSDYAQKAMKEMFQH-GFSPDG 247 (441)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~~~~~~~~--~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~ 247 (441)
..+.+.|++++|++.|..+.+..+. + ...+..+...|.+.|++++|.+.+.+.... +-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3455667777777777665221111 1 012445556666666666666666555431 001111
Q ss_pred h----hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 036107 248 V----SYTCFIEHYCREKDFRKVDYTLKEMQE----KGCKPS-VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318 (441)
Q Consensus 248 ~----~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 318 (441)
. +.+.+-..+...|++++|..++++... .+..+. ..++..+...|...|++++|..++++....-...+..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 111111222234556666665555432 122222 3445555556666666666666666555521111100
Q ss_pred HHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHH
Q 036107 319 FYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIE 360 (441)
Q Consensus 319 ~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 360 (441)
. ....+|..++..|...|++++|..++++..
T Consensus 172 ~-----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 172 P-----------SLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp T-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred h-----------hHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 0 000445555555666666666665555543
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=0.00096 Score=52.22 Aligned_cols=99 Identities=16% Similarity=0.010 Sum_probs=73.6
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD----GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC 285 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 285 (441)
.+...+..+...+.+.|++++|.+.|++..+. .|+ ...|..+...+...|++++|...+++..+... .+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHH
Confidence 35566777777778888888888888887764 355 56777777778888888888888888766532 256677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 286 TIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 286 ~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
..+..++...|++++|...|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77778888888888888888877764
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.83 E-value=0.00035 Score=58.41 Aligned_cols=134 Identities=8% Similarity=-0.054 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS----------------SQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
....+..+-..+.+.|++++|.+.|++.-...+.+ ...|..+-.+|.+.|++++|...+++..+
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34567777788899999999999999874322222 26788888999999999999999999987
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHhhCC
Q 036107 241 HGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL-KVYEKMKSDD 312 (441)
Q Consensus 241 ~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~~g 312 (441)
.. +.+...|..+-.++...|++++|...|++..+... -+...+..+..++...++.+++. ..|..|...|
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 52 23577888999999999999999999999887632 35677888888888887777766 5566665543
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.00046 Score=52.79 Aligned_cols=99 Identities=15% Similarity=0.078 Sum_probs=84.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290 (441)
Q Consensus 211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 290 (441)
+...+..+-..+.+.|++++|...|++..+.. +.+...|..+-.++.+.|++++|...|++..+... -+...|..+-.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 34567778888999999999999999988743 23578899999999999999999999999988643 36788999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhC
Q 036107 291 ALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 291 ~~~~~~~~~~a~~~~~~m~~~ 311 (441)
++...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.81 E-value=0.0004 Score=53.49 Aligned_cols=96 Identities=9% Similarity=0.016 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCC----HhhHHHH
Q 036107 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGF--SPD----GVSYTCF 253 (441)
Q Consensus 180 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~~l 253 (441)
++..+-..+.+.|++++|++.|++.-.-.+.+...|+.+-.+|.+.|++++|++.|++..+... .++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4444555556666666666666554332334455555555666666666666666655543210 000 1234444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 036107 254 IEHYCREKDFRKVDYTLKEMQE 275 (441)
Q Consensus 254 i~~~~~~g~~~~a~~l~~~m~~ 275 (441)
-.++...|++++|++.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4445555555555555555443
No 161
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.79 E-value=0.00022 Score=56.72 Aligned_cols=133 Identities=13% Similarity=-0.035 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-C
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKD----CISL--SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GFSP-D 246 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~ 246 (441)
..++..+-..+...|++++|...+++... ...+ ...++..+-..+...|++++|.+.+++..+. +-.+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45677788888999999999999987622 1111 1246788888999999999999999987642 1111 1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEK----GCKP-SVITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
..++..+-..+...|++++|...+++..+. +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456778888899999999999999987543 2211 245677888899999999999999988765
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.78 E-value=0.00065 Score=54.78 Aligned_cols=99 Identities=5% Similarity=0.023 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 256 (441)
+...+..+-..+.+.|++++|++.|++.-...+.+...|..+-.+|.+.|++++|...|++..+.. +-+...|..+-.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 456677777888889999999999988755445577788888888899999999999998887743 2246778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 036107 257 YCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~ 276 (441)
+...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 88899999999998887664
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.77 E-value=0.00057 Score=52.94 Aligned_cols=101 Identities=16% Similarity=-0.003 Sum_probs=87.5
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIV 288 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 288 (441)
+.+...+..+-..+.+.|++++|...|++..... +.+...|..+...+...|++++|...+++..+... .+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 3567788899999999999999999999988753 23578899999999999999999999999988643 367889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC
Q 036107 289 MHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
..++...|++++|...|....+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999988763
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.77 E-value=0.00045 Score=55.73 Aligned_cols=99 Identities=9% Similarity=-0.042 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 208 (441)
+...|..+-..+.+.|++++|++.|++..+..+. +...|..+-.++.+.|++++|+..|++.-...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 75 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA--------------NPIYLSNRAAAYSASGQHEKAAEDAELATVVD 75 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4567888889999999999999999999886532 67889999999999999999999999885544
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 241 (441)
+.+...|..+-.+|.+.|++++|.+.|++..+.
T Consensus 76 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 76 PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 567888999999999999999999999998874
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.74 E-value=0.0013 Score=50.57 Aligned_cols=107 Identities=10% Similarity=-0.031 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--- 206 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--- 206 (441)
...+..+-..+.+.|++++|++.|++..+..|. +...|..+-.+|.+.|++++|++.|++.-.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~--------------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS--------------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 356778888999999999999999999886533 678899999999999999999999987621
Q ss_pred CCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 036107 207 CISLS----SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC 252 (441)
Q Consensus 207 ~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 252 (441)
...++ ..+|..+-.++...|++++|.+.|++... ..||..+...
T Consensus 74 ~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 121 (127)
T 4gcn_A 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK 121 (127)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence 22222 24677778889999999999999999876 3466654433
No 166
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.73 E-value=0.00048 Score=54.14 Aligned_cols=94 Identities=9% Similarity=-0.118 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036107 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEK 294 (441)
Q Consensus 215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 294 (441)
+..+-..+.+.|++++|...|++..... +.+...|..+-.++.+.|++++|...|++..+... -+...+..+-.++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3344445555566666666665555421 12344555555555566666666666665555422 234455555555666
Q ss_pred cCCHHHHHHHHHHHhh
Q 036107 295 AKQIYEALKVYEKMKS 310 (441)
Q Consensus 295 ~~~~~~a~~~~~~m~~ 310 (441)
.|++++|...|+...+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666655544
No 167
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.71 E-value=0.00053 Score=54.47 Aligned_cols=138 Identities=10% Similarity=-0.057 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--- 206 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--- 206 (441)
..+|..+-..+...|++++|.+.+++.....+....... -..++..+-..+...|++++|.+.++....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--------ERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 356788888889999999999999988764311111000 135778888899999999999999988622
Q ss_pred --CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036107 207 --CIS-LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH----GFSP-DGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275 (441)
Q Consensus 207 --~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 275 (441)
+.. .....+..+-..+...|++++|.+.+++..+. +..+ ...++..+-..+...|++++|.+.+++..+
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 111 12456777888899999999999999887642 2111 235677888889999999999999998765
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=0.0014 Score=51.21 Aligned_cols=101 Identities=11% Similarity=-0.096 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 208 (441)
+...|..+-..+.+.|++++|.+.|++..+..+..+ .....+..+...+...|++++|...++......
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 95 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-----------DQAVLHRNRAACHLKLEDYDKAETEASKAIEKD 95 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch-----------HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 566777777777777888888888877766431100 014556666666677777777777776653333
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
+.+...+..+..++...|++++|.+.|++..+
T Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455666666666667777777777766655
No 169
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.68 E-value=0.0015 Score=57.58 Aligned_cols=202 Identities=7% Similarity=-0.079 Sum_probs=132.2
Q ss_pred ChHHHHHHHhhhhhHhhhhcCCCCC-CHHHHHHH-------HHHHHcCCChhHHHHHHHHHHHhcCCCccHHHH-HHHH-
Q 036107 104 SPDKVVEALKCFCFTWAKTQTGYMH-TPETYNAM-------VEALGKSKKFGLMWELVKEIDELSNGYVSLAAM-STVM- 173 (441)
Q Consensus 104 ~~g~~~~A~~~~~~~~~~~~~g~~p-~~~~y~~l-------i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~-~~~~- 173 (441)
..++...|++.|...... .| ....|..+ ...+.+.++..+++..+..-....+.......- ..+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~-----dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY-----DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHh-----ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccc
Confidence 478899999999644433 24 36788877 455555555555555444433311110000000 0000
Q ss_pred ----hhc-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--
Q 036107 174 ----RRL-DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-- 246 (441)
Q Consensus 174 ----~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-- 246 (441)
... -....-.+...+...|++++|.++|+.+...- |+....-.+-..+.+.+++++|+..|+...... .|.
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 000 02334456677889999999999999885433 433355555668899999999999998665431 111
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107 247 GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPS--VITCTIVMHALEKAKQIYEALKVYEKMKSDD 312 (441)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 312 (441)
...+..+-.++.+.|++++|+..|++.......|. .......-.++.+.|+.++|..+|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23677788899999999999999999875443254 3456667778899999999999999999863
No 170
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.63 E-value=0.0031 Score=56.00 Aligned_cols=99 Identities=6% Similarity=-0.012 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 256 (441)
+...+..+-..+.+.|++++|...|+..-...+.+...|..+-.+|.+.|++++|.+.+++..+.. +-+...+..+-.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445667777788888999999999888744444577788888888889999999999998887642 2356778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 036107 257 YCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~ 276 (441)
+...|++++|...|++..+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88889999999888887653
No 171
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.62 E-value=0.048 Score=52.62 Aligned_cols=298 Identities=6% Similarity=-0.117 Sum_probs=149.7
Q ss_pred HHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHh-cCCCccHHHHHHHHhhcCHHHHHH
Q 036107 106 DKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKK-FGLMWELVKEIDEL-SNGYVSLAAMSTVMRRLDTRAMSV 183 (441)
Q Consensus 106 g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~-~~~a~~l~~~m~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 183 (441)
|.++.|..+|+..- ...|+...|...+.-..+.+. .+.+..+|+..... |..+. +...|..
T Consensus 28 ~~~e~~~~iferal-----~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~------------s~~iW~~ 90 (493)
T 2uy1_A 28 KDYRSLESLFGRCL-----KKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWD------------SYGLYKE 90 (493)
T ss_dssp TCHHHHHHHHHHHS-----TTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTT------------CHHHHHH
T ss_pred CCHHHHHHHHHHHh-----ccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcc------------cHHHHHH
Confidence 66888888885222 234799999998888877663 45677788876653 21222 4455555
Q ss_pred HHHHHH----hcCCHHHHHHHHHHhhhCCCCc--HHHHHHHHHHHH-------------hcCCHHHHHHHHHHHhhCCCC
Q 036107 184 LMDTLV----KRNSVAHAYKVFLKFKDCISLS--SQIFDVLIHGWC-------------KTRKSDYAQKAMKEMFQHGFS 244 (441)
Q Consensus 184 li~~~~----~~g~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~-------------~~~~~~~a~~~~~~m~~~g~~ 244 (441)
.+..+. ..|+.+.+..+|++.-. +++. ...|......-. ..+.+..|..+++++...--.
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 555433 24567778888877633 1111 112222111100 011233344444443321000
Q ss_pred CCHhhHHHHHHHHHhcC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 036107 245 PDGVSYTCFIEHYCREK--D-----FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDT 317 (441)
Q Consensus 245 p~~~~~~~li~~~~~~g--~-----~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 317 (441)
.+...|...+.--...+ - .+.+..+|++..... +-+...|...+.-+.+.|++++|.++|++.... +.+.
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~ 246 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGM 246 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSS
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcH
Confidence 12334544444322211 0 344666777766642 334666777777777778888888888877766 2222
Q ss_pred HHHHHHH-------------HHHHhc----------Ccc-chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 036107 318 SFYSSLI-------------FILSKA----------VRF-LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHAR 373 (441)
Q Consensus 318 ~~~~~li-------------~~~~~~----------g~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 373 (441)
..+.... ..+... +.. ..|-..+....+.++.+.|..+|++.... .++...|..
T Consensus 247 ~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~--~~~~~v~i~ 324 (493)
T 2uy1_A 247 FLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNE--GVGPHVFIY 324 (493)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTS--CCCHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCC--CCChHHHHH
Confidence 2211111 010000 000 33555666666677788888888887211 123334432
Q ss_pred --HHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 036107 374 --SLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDEL 431 (441)
Q Consensus 374 --li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 431 (441)
.+... ..++.+.|..+++...+ . ..-+...+...++...+.|+.+.|..+++.
T Consensus 325 ~A~lE~~-~~~d~~~ar~ife~al~---~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er 379 (493)
T 2uy1_A 325 CAFIEYY-ATGSRATPYNIFSSGLL---K-HPDSTLLKEEFFLFLLRIGDEENARALFKR 379 (493)
T ss_dssp HHHHHHH-HHCCSHHHHHHHHHHHH---H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHH-HCCChHHHHHHHHHHHH---H-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22221 12357778775553332 1 111233444555555666666666666555
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.59 E-value=0.00079 Score=51.32 Aligned_cols=92 Identities=8% Similarity=-0.068 Sum_probs=56.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHH
Q 036107 135 AMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214 (441)
Q Consensus 135 ~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 214 (441)
.+-..+.+.|++++|...|++..+..+. +...+..+-.++...|++++|+..|++.-...+-+...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~--------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 87 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE--------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV 87 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3444556666777777777766664422 45566666666666677777766666653333344555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 215 FDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 215 ~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
+..+..++.+.|++++|...|++..+
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666666666654
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.54 E-value=0.00025 Score=53.65 Aligned_cols=85 Identities=9% Similarity=0.002 Sum_probs=47.6
Q ss_pred cCCHHHHHHHHHHHhhCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036107 225 TRKSDYAQKAMKEMFQHG--FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL 302 (441)
Q Consensus 225 ~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 302 (441)
.|++++|...|++..+.+ -+-+...|..+-..+.+.|++++|...|++..+.... +...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 355666666666665532 1123345556666666666666666666666554322 3555666666666666666666
Q ss_pred HHHHHHhh
Q 036107 303 KVYEKMKS 310 (441)
Q Consensus 303 ~~~~~m~~ 310 (441)
..|++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.53 E-value=0.0021 Score=48.98 Aligned_cols=90 Identities=14% Similarity=0.139 Sum_probs=48.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HhhHHHHHHHH
Q 036107 185 MDTLVKRNSVAHAYKVFLKFKDCISLSS---QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD----GVSYTCFIEHY 257 (441)
Q Consensus 185 i~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~ 257 (441)
...+.+.|++++|.+.|+......+.+. ..+..+-.++.+.|++++|...|++..+.. |+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHH
Confidence 3445556666666666665532212222 345555556666666666666666655432 22 34455555556
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 036107 258 CREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 258 ~~~g~~~~a~~l~~~m~~~ 276 (441)
.+.|++++|...|++..+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6666666666666665554
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.49 E-value=0.0037 Score=47.60 Aligned_cols=96 Identities=15% Similarity=0.007 Sum_probs=75.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc---
Q 036107 135 AMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS--- 211 (441)
Q Consensus 135 ~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--- 211 (441)
.+-..+.+.|++++|.+.|++..+..+..+. ....+..+..++.+.|++++|...|+..-...+.+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVY-----------TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKA 75 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc-----------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCccc
Confidence 3455677899999999999999886533221 12577778888999999999999999884433333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241 (441)
Q Consensus 212 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 241 (441)
...+..+..++.+.|++++|...|++..+.
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566888889999999999999999999874
No 176
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.46 E-value=0.088 Score=50.72 Aligned_cols=206 Identities=8% Similarity=0.015 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107 194 VAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEM 273 (441)
Q Consensus 194 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 273 (441)
.+.+..+|++.-...+-+...|-..+..+.+.|+++.|..+|++.... |....... .|+...+.++. ++.+
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHH
Confidence 345667888775545566778888888889999999999999999986 44432221 23322221222 2332
Q ss_pred HHcC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHH
Q 036107 274 QEKG---------CKP---SVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMIS 341 (441)
Q Consensus 274 ~~~g---------~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~ 341 (441)
.+.- ..+ ....|...+....+.++.+.|..+|+.....+ .+..+|. ..+.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i--------------~~A~lE 329 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG--VGPHVFI--------------YCAFIE 329 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHH--------------HHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHH--------------HHHHHH
Confidence 2210 011 12456677777777889999999999992222 2322211 122233
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036107 342 SACVRSEEGNALKLRQKIEEDSCKPD-CETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKS 420 (441)
Q Consensus 342 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 420 (441)
... .++.+.|.++|+...+.- |+ ...+...++-..+.|+.+.|+.+++ +. .-....|...++.-...|
T Consensus 330 ~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~e---r~-----~k~~~lw~~~~~fE~~~G 398 (493)
T 2uy1_A 330 YYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFK---RL-----EKTSRMWDSMIEYEFMVG 398 (493)
T ss_dssp HHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHH---HS-----CCBHHHHHHHHHHHHHHS
T ss_pred HHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH---HH-----HHHHHHHHHHHHHHHHCC
Confidence 222 336899999999987643 33 3345566777778899999887544 42 225677888888778889
Q ss_pred CccHHHHHHHHHHHH
Q 036107 421 LGNAKERIDELLTHA 435 (441)
Q Consensus 421 ~~~~a~~~~~~m~~~ 435 (441)
+.+.+.++++.....
T Consensus 399 ~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 399 SMELFRELVDQKMDA 413 (493)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988876653
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.45 E-value=0.00048 Score=66.48 Aligned_cols=118 Identities=10% Similarity=-0.019 Sum_probs=91.2
Q ss_pred HHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHH
Q 036107 138 EALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDV 217 (441)
Q Consensus 138 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 217 (441)
..+.+.|++++|.+.+++..+..+. +..++..+-.++.+.|++++|++.+++.-+..+.+...|..
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 79 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS--------------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 79 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc--------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3456789999999999998886522 67889999999999999999999999886555667788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHH--HHhcCCHHHHHHHHH
Q 036107 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEH--YCREKDFRKVDYTLK 271 (441)
Q Consensus 218 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~--~~~~g~~~~a~~l~~ 271 (441)
+-.+|.+.|++++|.+.|++..+. .| +...+..+-.+ +.+.|++++|.+.++
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999998874 23 33455555555 788899999999988
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.43 E-value=0.0013 Score=50.07 Aligned_cols=91 Identities=9% Similarity=-0.062 Sum_probs=48.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297 (441)
Q Consensus 218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 297 (441)
+-..+.+.|++++|...|++..+.. +.+...|..+-.++...|++++|+..|++..+.... +...+..+..++.+.|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3444555556666666555555421 113445555555555566666666666555544221 34455555555666666
Q ss_pred HHHHHHHHHHHhh
Q 036107 298 IYEALKVYEKMKS 310 (441)
Q Consensus 298 ~~~a~~~~~~m~~ 310 (441)
+++|...|++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655554
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.40 E-value=0.00048 Score=66.47 Aligned_cols=119 Identities=11% Similarity=0.001 Sum_probs=92.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 036107 186 DTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265 (441)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 265 (441)
..+.+.|++++|.+.|++.-+..+.+...|..+-.+|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 345678999999999998855445678899999999999999999999999998853 2356789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 036107 266 VDYTLKEMQEKGCKPSVITCTIVMHA--LEKAKQIYEALKVYE 306 (441)
Q Consensus 266 a~~l~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~ 306 (441)
|.+.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999998775321 23344444444 888899999999998
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.40 E-value=0.00048 Score=52.05 Aligned_cols=87 Identities=5% Similarity=-0.177 Sum_probs=48.1
Q ss_pred CCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHH
Q 036107 143 SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGW 222 (441)
Q Consensus 143 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 222 (441)
.|++++|++.|++..+.+...|. +...+..+-..+.+.|++++|...|++.-...+-+...+..+..++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 71 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKD-----------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVL 71 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCcc-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 45666666666666553211111 3455666666666666666666666665433344455566666666
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 036107 223 CKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 223 ~~~~~~~~a~~~~~~m~~ 240 (441)
.+.|++++|...|++...
T Consensus 72 ~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 72 YNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666554
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.39 E-value=0.0013 Score=63.37 Aligned_cols=131 Identities=11% Similarity=0.041 Sum_probs=86.2
Q ss_pred HHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh----h----CCCC
Q 036107 139 ALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK----D----CISL 210 (441)
Q Consensus 139 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~----~~~~ 210 (441)
.+...|++++|..++++..+........... ....+++.|...|...|++++|+.++++.- . ..+-
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp------~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNL------YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 4567899999999999877643221110000 035788899999999999999999887651 1 2223
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCC-CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036107 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ-----HGFS-PD-GVSYTCFIEHYCREKDFRKVDYTLKEMQE 275 (441)
Q Consensus 211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~-p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 275 (441)
...+++.|-..|...|++++|+.++++... .|-. |+ ..+.+.+-.++...+.+++|+.+|..+++
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788888888888888887776653 1211 22 23444555566667777777777777765
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.37 E-value=0.0022 Score=61.45 Aligned_cols=132 Identities=14% Similarity=0.057 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS---------------SQIFDVLIHGWCKTRKSDYAQKAMKEMFQH 241 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 241 (441)
....+..+-..+.+.|++++|...|++.-...+.+ ...|..+-.+|.+.|++++|+..|++..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 45677888889999999999999998873322222 577888889999999999999999998874
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHhh
Q 036107 242 GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEAL-KVYEKMKS 310 (441)
Q Consensus 242 g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~ 310 (441)
. +.+...|..+-.+|...|++++|...|++..+... -+...+..+-.++.+.++.+++. .++..|..
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 23577888888899999999999999999877532 24567777888888888887765 34555543
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.36 E-value=0.0035 Score=60.06 Aligned_cols=144 Identities=11% Similarity=-0.054 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccH-HHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSL-AAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCI 208 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 208 (441)
...|..+-..+.+.|++++|...|++..+..+..+.. ..............|..+-.++.+.|++++|+..|++.-...
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4578888899999999999999999988855332100 000000000115788889999999999999999999985544
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHH-HHHHHHH
Q 036107 209 SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDY-TLKEMQE 275 (441)
Q Consensus 209 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~-l~~~m~~ 275 (441)
+.+...|..+-.+|.+.|++++|...|++..+. .| +...+..+-..+.+.++.+++.+ +++.|..
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888999999999999999999999999875 34 45678888888888888887764 5555543
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.34 E-value=0.0014 Score=63.13 Aligned_cols=125 Identities=9% Similarity=0.004 Sum_probs=95.4
Q ss_pred HHHHhcCCHHHHHHHHHHh----hhC----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CCCC-HhhH
Q 036107 186 DTLVKRNSVAHAYKVFLKF----KDC----ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH-----G-FSPD-GVSY 250 (441)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~~----~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~-~~~~ 250 (441)
..+...|++++|+.++++. ..- .+....+++.|...|...|++++|..++++.... | --|+ ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456789999999999775 121 2235567999999999999999999999887641 2 1233 4679
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-----cCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 251 TCFIEHYCREKDFRKVDYTLKEMQE-----KGC-KPS-VITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 251 ~~li~~~~~~g~~~~a~~l~~~m~~-----~g~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
+.|-..|...|++++|+.++++..+ .|. .|+ ..+.+.+-.++...+.+.+|+.+|..+.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998653 232 122 34556677888899999999999999876
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.32 E-value=0.0039 Score=57.82 Aligned_cols=123 Identities=13% Similarity=0.017 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh----------------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKD----------------CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG 242 (441)
Q Consensus 179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 242 (441)
..+..+-..+.+.|++++|++.|++.-. ..+.+...|..+-.+|.+.|++++|.+.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4566677788899999999999987632 222345677888888888999999999998888743
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036107 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALK 303 (441)
Q Consensus 243 ~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 303 (441)
+-+...|..+-.+|...|++++|.+.|++..+..- -+...+..+-..+.+.++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 22567788888888899999999999988877532 256666777777777776666543
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.31 E-value=0.0047 Score=49.44 Aligned_cols=110 Identities=8% Similarity=-0.016 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcC-----CCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSN-----GYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF 204 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 204 (441)
...+...-..+.+.|++++|++.|.+....-+ ..+..... ......+...|..+-.++.+.|++++|+..++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-VELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-HHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45677778888999999999999999877410 00000000 0001113455666666666667777777666665
Q ss_pred hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 205 KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 205 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
-...+.+...|..+-.+|...|++++|...|++..+
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 333344555666666666666666666666666655
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.17 E-value=0.0065 Score=56.34 Aligned_cols=135 Identities=12% Similarity=0.087 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCc---cHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYV---SLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC 207 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~---~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 207 (441)
..|..+-..+.+.|++++|++.|++..+..+..+ ...... -....+..+|..+-.++.+.|++++|++.+++.-..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~-~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGA-KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHG-GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHH-HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 4577888889999999999999998876210000 000000 001125678889999999999999999999998654
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHH
Q 036107 208 ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP-DGVSYTCFIEHYCREKDFRKVDY 268 (441)
Q Consensus 208 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~ 268 (441)
.+.+...|..+-.+|.+.|++++|.+.|++..+. .| +...+..+-..+...++.+++.+
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999998874 34 45666666666766666666543
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.16 E-value=0.0066 Score=48.55 Aligned_cols=98 Identities=7% Similarity=0.034 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDC------------------ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 239 (441)
...+...-..+.+.|++++|+..|...-.. .+.+...|..+-.+|.+.|++++|...+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666667888899999999998775221 12233456666667777777777777777666
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107 240 QHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 240 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
+.. +.+...|..+-.++...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 532 224556666666777777777777777766554
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.05 E-value=0.011 Score=47.09 Aligned_cols=100 Identities=10% Similarity=-0.026 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-------------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC
Q 036107 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-------------GVSYTCFIEHYCREKDFRKVDYTLKEMQEK-----GC 278 (441)
Q Consensus 217 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g~ 278 (441)
..-..+.+.|++++|...|++..+. .|+ ...|+.+-.++.+.|++++|+..+++..+. .+
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3344455555556665555555442 222 227788888888888888888888887664 22
Q ss_pred CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCCHH
Q 036107 279 KPS-VITC----TIVMHALEKAKQIYEALKVYEKMKS-----DDCLTDTS 318 (441)
Q Consensus 279 ~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~ 318 (441)
.|+ ...| ...-.++...|++++|...|+...+ .|+.+...
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 454 4567 8888899999999999999998754 45555443
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.00089 Score=49.56 Aligned_cols=63 Identities=11% Similarity=-0.044 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 036107 129 TPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 205 (441)
+...|..+-..+.+.|++++|.+.|++..+..+. +...+..+-.++.+.|++++|++.|++.-
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ--------------NPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3455666666666777777777777766664422 45566666666666777777777666653
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.99 E-value=0.064 Score=52.67 Aligned_cols=173 Identities=8% Similarity=-0.062 Sum_probs=129.8
Q ss_pred CCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCCcH
Q 036107 143 SKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNS----------VAHAYKVFLKFKDCISLSS 212 (441)
Q Consensus 143 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~ 212 (441)
....++|++.++++....+. +..+|+.--..+.+.|+ ++++++.++.+-...+-+.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~--------------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y 107 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD--------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY 107 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred CCCCHHHHHHHHHHHHHCch--------------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH
Confidence 34456789999999986644 44566655555555566 8999999999866567788
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036107 213 QIFDVLIHGWCKTR--KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK-DFRKVDYTLKEMQEKGCKPSVITCTIVM 289 (441)
Q Consensus 213 ~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~~~~~ll 289 (441)
.+|+.---.+.+.+ +++++++.++++.+... .|...|+..-..+.+.| .++++++.++++.+.... |...|+...
T Consensus 108 ~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~ 185 (567)
T 1dce_A 108 GTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRS 185 (567)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHH
Confidence 88998888888888 77999999999998643 47788998888888888 899999999999887554 788888877
Q ss_pred HHHHhc--------------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc
Q 036107 290 HALEKA--------------KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVR 332 (441)
Q Consensus 290 ~~~~~~--------------~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 332 (441)
..+.+. +.++++.+.+++..... +-|...|.-.-..+.+.++
T Consensus 186 ~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 777663 55788999998887743 2345555555555544443
No 192
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.99 E-value=0.19 Score=45.32 Aligned_cols=235 Identities=6% Similarity=-0.040 Sum_probs=137.8
Q ss_pred hcCCH-HHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 036107 190 KRNSV-AHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRK----------SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYC 258 (441)
Q Consensus 190 ~~g~~-~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 258 (441)
+.|.+ ++|+++++.+-.-.+-+..+|+.-=..+...+. +++++.+++.+.... +-+..+|+.---.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 44555 478999988855445555566653222222222 678899999988743 236778887777777
Q ss_pred hcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccch
Q 036107 259 REK--DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ-IYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLI 335 (441)
Q Consensus 259 ~~g--~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 335 (441)
+.| .+++++.+++.+.+...+ |...|+.---.+...|. ++++.+.++.+.+.. +-|...|+.....+.+.+....
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccc
Confidence 777 489999999999987654 88888888888888888 589999999999865 3355554433333222211000
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc-----------CChhhHHHHHHHHHHHHHCCCC
Q 036107 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDC-ETHARSLKMCCHK-----------KRMKDGMLVLNLMREMLSKGIV 403 (441)
Q Consensus 336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~-----------g~~~~a~~~~~~~~~m~~~~~~ 403 (441)
-+. .+-...+.++++++.+...... .|+. ..|+-+-..+.+. +.++++.+ .+.++.+ ..
T Consensus 198 ~~~--~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~---~~~elle--~~ 268 (331)
T 3dss_A 198 SGP--QGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE---SCKELQE--LE 268 (331)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH---HHHHHHH--HC
T ss_pred ccc--ccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH---HHHHHHh--hC
Confidence 000 0000013467888888887754 4444 4444333333333 23444433 5555443 34
Q ss_pred CCH-HHHHHHH---HHHHhcCCccHHHHHHHHHHHHh
Q 036107 404 PQE-STHKMLA---EELEKKSLGNAKERIDELLTHAT 436 (441)
Q Consensus 404 p~~-~~~~~ll---~~~~~~g~~~~a~~~~~~m~~~~ 436 (441)
||. ..+..++ .+....|..+++...++.+.+.-
T Consensus 269 pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 269 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 443 2332222 22234566777777777776544
No 193
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.87 E-value=0.024 Score=58.26 Aligned_cols=102 Identities=10% Similarity=0.018 Sum_probs=71.5
Q ss_pred HHHHhcCCHHHHHH-HHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 036107 186 DTLVKRNSVAHAYK-VFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264 (441)
Q Consensus 186 ~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 264 (441)
......+++++|.+ ++..++ +......++..+.+.|..+.|+++.++-. .-...+...|+++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~-----~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE-----GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT 669 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC-----CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred hHHHHhCCHHHHHHHHHhcCC-----chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence 34456788888877 553332 01223777888888889888887663211 1133456688999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 265 ~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
+|.++.+.+ .+...|..+-..+.+.++++.|++.|..+.+
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 998886554 3668899999999999999999999988764
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.80 E-value=0.0053 Score=56.16 Aligned_cols=116 Identities=9% Similarity=-0.068 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 256 (441)
....+..+-..+.+.|++++|...|++.-.. .|+... +...++.+++...+ . ...|..+-.+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~ 239 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY-MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH-SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHH
Confidence 3556666777777788888888888775321 132221 11222333332221 1 1367777788
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
+.+.|++++|...+++..+.. +-+...|..+-.+|...|++++|...|+...+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888877653 236778888888888888888888888887664
No 195
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.79 E-value=0.28 Score=44.25 Aligned_cols=215 Identities=8% Similarity=0.001 Sum_probs=140.5
Q ss_pred HHHHHHHHHHH---HcCCChh-HHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCC----------HH
Q 036107 130 PETYNAMVEAL---GKSKKFG-LMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNS----------VA 195 (441)
Q Consensus 130 ~~~y~~li~~~---~~~~~~~-~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~ 195 (441)
...|..++..+ .+.|.+. +|+++++.+....|.. ..+|+.--..+...+. ++
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~--------------ytaWn~Rr~iL~~l~~~~~~~~~~~~l~ 91 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDF--------------ATLWNCRREVLQHLETEKSPEESAALVK 91 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTC--------------HHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchh--------------HHHHHHHHHHHHHhcccccchhhhHHHH
Confidence 34455444433 3456555 7999999999865442 3333332222222222 67
Q ss_pred HHHHHHHHhhhCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHH
Q 036107 196 HAYKVFLKFKDCISLSSQIFDVLIHGWCKTR--KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD-FRKVDYTLKE 272 (441)
Q Consensus 196 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~l~~~ 272 (441)
+++.+++.+-...+-+..+|+.---.+.+.+ .+++++.+++.+.+.. +.|...|+----.+...|. ++++++.++.
T Consensus 92 ~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 92 AELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 8888888875555678888888777777777 4899999999999854 3477888888888888888 6999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHH
Q 036107 273 MQEKGCKPSVITCTIVMHALEKA--------------KQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNT 338 (441)
Q Consensus 273 m~~~g~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~ 338 (441)
+.+.... |...|+.....+.+. +.++++.+.+....... +-|...|+-+-..+.+.-.....
T Consensus 171 ~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~-- 246 (331)
T 3dss_A 171 LITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL-- 246 (331)
T ss_dssp HHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC--
T ss_pred HHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc--
Confidence 9987654 788888776666655 45788888888887753 33555544333333322110000
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 036107 339 MISSACVRSEEGNALKLRQKIEEDSCKPDC 368 (441)
Q Consensus 339 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 368 (441)
.-.+.+.++++++.++++.+. .||.
T Consensus 247 ---~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 247 ---SVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred ---chHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 001124568899999998864 5665
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.79 E-value=0.0089 Score=54.63 Aligned_cols=148 Identities=6% Similarity=-0.066 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCIS 209 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 209 (441)
...|..+-..+.+.|++++|...|++.....+. .. .+...|+.+++...+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~---------------~~-------~~~~~~~~~~~~~~l-------- 228 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD---------------DF-------MFQLYGKYQDMALAV-------- 228 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH---------------HH-------HHTCCHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc---------------ch-------hhhhcccHHHHHHHH--------
Confidence 346777778888999999999999998774411 11 011222333332211
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKP-SVITCTIV 288 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~l 288 (441)
....|..+-.+|.+.|++++|...|++..+.. +.+...|..+-.+|...|++++|...|++..+.. | +...+..+
T Consensus 229 -~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L 304 (338)
T 2if4_A 229 -KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRREL 304 (338)
T ss_dssp -HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 11256666677777777777777777766532 1245667777777777777777777777765432 2 23333333
Q ss_pred HHH-HHhcCCHHHHHHHHHHHhhC
Q 036107 289 MHA-LEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 289 l~~-~~~~~~~~~a~~~~~~m~~~ 311 (441)
... ....+..+++..+|..|...
T Consensus 305 ~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 305 RALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC
Confidence 333 22345566666777766543
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.73 E-value=0.013 Score=43.62 Aligned_cols=62 Identities=13% Similarity=-0.067 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMF 239 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 239 (441)
...+..+-..+...|++++|+..|++.-...+.+...|..+-.+|.+.|++++|...|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444555555555555544422222333344444444444444444444444443
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.71 E-value=0.021 Score=39.99 Aligned_cols=59 Identities=17% Similarity=0.149 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036107 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF 204 (441)
Q Consensus 132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 204 (441)
.|..+-..+.+.|++++|.+.|++.....+. +..++..+-..+.+.|++++|.+.|++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN--------------NAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--------------CHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444444455555555555555554443211 3344444444455555555555555444
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.71 E-value=0.062 Score=41.62 Aligned_cols=113 Identities=14% Similarity=0.088 Sum_probs=91.4
Q ss_pred cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHH
Q 036107 191 RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----EKDFRKV 266 (441)
Q Consensus 191 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a 266 (441)
.++.++|.+.|++.-+.-.+... |-..|...+.+++|.++|++..+.| +...+..|-..|.. .+++++|
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35788999999887443344443 6666777788999999999998874 67778888888887 7899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCC
Q 036107 267 DYTLKEMQEKGCKPSVITCTIVMHALEK----AKQIYEALKVYEKMKSDDC 313 (441)
Q Consensus 267 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~ 313 (441)
.+.|++..+.| +...+..|-..|.. .+++++|.+.|+...+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999998875 56778888888888 8999999999999998874
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.0058 Score=44.92 Aligned_cols=61 Identities=7% Similarity=-0.040 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036107 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275 (441)
Q Consensus 214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 275 (441)
.+..+-..+.+.|++++|.+.|++..+.. +.+...|..+-.++.+.|++++|.+.+++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444444444444555544444444321 11334444444444455555555555544443
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.64 E-value=0.048 Score=42.30 Aligned_cols=112 Identities=11% Similarity=-0.037 Sum_probs=90.1
Q ss_pred CChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHH
Q 036107 144 KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWC 223 (441)
Q Consensus 144 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 223 (441)
+++++|.+.|++..+.+ ++... |-..|...+.+++|.+.|++.-+. -+...+..|-..|.
T Consensus 9 ~d~~~A~~~~~~aa~~g----------------~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~ 68 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN----------------EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYE 68 (138)
T ss_dssp HHHHHHHHHHHHHHHTT----------------CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC----------------CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 46788999999988866 33444 666667778889999999887432 45666788888888
Q ss_pred h----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 036107 224 K----TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR----EKDFRKVDYTLKEMQEKGC 278 (441)
Q Consensus 224 ~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~ 278 (441)
. .+++++|.++|++..+.| +...+..|-..|.. .+++++|...|++..+.|.
T Consensus 69 ~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 69 NGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred cCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7 889999999999999875 67778888888888 8899999999999988764
No 202
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.63 E-value=0.035 Score=44.10 Aligned_cols=72 Identities=13% Similarity=-0.036 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF 204 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 204 (441)
..+...-..+.+.|++++|++.|++..+..+..+....+. ....+...|..+-.++.+.|++++|+..+++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~--~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD--HAGFDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCC--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhh--hccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455666778889999999999999988775533210000 00002236666666666666666666666554
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.61 E-value=0.011 Score=43.93 Aligned_cols=78 Identities=6% Similarity=-0.054 Sum_probs=47.5
Q ss_pred HHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036107 197 AYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE 275 (441)
Q Consensus 197 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 275 (441)
|++.|+..-...+.+...+..+-..|...|++++|...|++..+.. +.+...|..+-.++...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555433334455666666667777777777777777666532 12345666666667777777777777766554
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.56 E-value=0.15 Score=49.98 Aligned_cols=188 Identities=6% Similarity=-0.085 Sum_probs=124.8
Q ss_pred cCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 036107 191 RNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRK----------SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE 260 (441)
Q Consensus 191 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 260 (441)
...-++|++.++.+-...+-+..+|+.-=..+.+.|+ ++++++.++++.+... -+..+|+.--..+.+.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRL 120 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 3445688999988854445566677765555555555 8999999999987542 3677888888888889
Q ss_pred C--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHH
Q 036107 261 K--DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK-QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYN 337 (441)
Q Consensus 261 g--~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~ 337 (441)
| +++++++.++++.+...+ |...|+.---.+.+.| .++++.+.++++.+... -|...|+..-..+.+.+....-.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccc
Confidence 9 779999999999998655 8899998888888889 89999999999988653 34555433333322211100000
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChh
Q 036107 338 TMISSACVRSEEGNALKLRQKIEEDSCKP-DCETHARSLKMCCHKKRMK 385 (441)
Q Consensus 338 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~ 385 (441)
. .+-...+.++++++.+++.... .| |...|.-.-..+.+.++.+
T Consensus 199 ~--~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 199 P--QGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp S--CCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCS
T ss_pred c--cccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCcc
Confidence 0 0000114568888888887754 34 4455655555555555533
No 205
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.50 E-value=0.2 Score=51.32 Aligned_cols=45 Identities=11% Similarity=0.017 Sum_probs=21.2
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107 189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238 (441)
Q Consensus 189 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 238 (441)
...|++++|+++...+ .+...|..+-..+.+.++++.|.+.|..+
T Consensus 663 l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3345555555444333 12334555555555555555555555544
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.46 E-value=0.029 Score=39.24 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
.+..+-..+.+.|++++|...|++..+.. +.+...+..+-..+.+.|++++|...|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444555555555555555544321 113344455555555555555555555555443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.36 E-value=0.019 Score=41.61 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 248 VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309 (441)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 309 (441)
..+..+-..+.+.|++++|...|++..+.... +...|..+-.+|.+.|++++|.+.|++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444555555555555544443211 23344444455555555555555544443
No 208
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.26 E-value=0.26 Score=37.49 Aligned_cols=139 Identities=11% Similarity=0.012 Sum_probs=90.4
Q ss_pred cCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHH
Q 036107 142 KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHG 221 (441)
Q Consensus 142 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 221 (441)
-.|..++-.++..+..... +..-||-+|--....-+-+-..++++.+.+-+..+
T Consensus 19 ldG~v~qGveii~k~~~ss----------------ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis---------- 72 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS----------------TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD---------- 72 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS----------------CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG----------
T ss_pred HhhhHHHHHHHHHHHcCCC----------------CccccceeeeecchhhchhHHHHHHHHHhhhcCcH----------
Confidence 4577777777777777655 45555555555555566666666666554432222
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036107 222 WCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEA 301 (441)
Q Consensus 222 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 301 (441)
++|++..+..-+-.+- .+....+..++.....|+-|+-.+++.++.. +.+|++.....+-.||.+.|+..++
T Consensus 73 --~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a 144 (172)
T 1wy6_A 73 --KCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDA 144 (172)
T ss_dssp --GCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred --hhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhH
Confidence 2455555555544442 2445566677777788888888888888644 3456777778888888888888888
Q ss_pred HHHHHHHhhCCCC
Q 036107 302 LKVYEKMKSDDCL 314 (441)
Q Consensus 302 ~~~~~~m~~~g~~ 314 (441)
.+++.+.-++|++
T Consensus 145 ~eLl~~AC~kG~k 157 (172)
T 1wy6_A 145 TTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhH
Confidence 8888888887764
No 209
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.12 E-value=0.31 Score=37.07 Aligned_cols=134 Identities=10% Similarity=0.036 Sum_probs=83.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH---HHHHHHHHHHhcCcc-ch
Q 036107 260 EKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS---FYSSLIFILSKAVRF-LI 335 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~-~~ 335 (441)
.|..++..++..+.... .+..-||.+|--....-+-+-..++++..-+ -.|.. -...++..|.+.+.. ..
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis~C~NlKrVi~C~~~~n~~se~ 93 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLDKCQNLKSVVECGVINNTLNEH 93 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCcHhhhcHHHHHHHHHHhcchHHH
Confidence 45566666666665543 2344455555444444444444444333322 11211 123445555555554 34
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCC
Q 036107 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIV 403 (441)
Q Consensus 336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~ 403 (441)
.+..+......|+-++-.+++..+.. .-+|+....-.+-.||.+.|+..++.+ ++.+..++|++
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~e---Ll~~AC~kG~k 157 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATT---LLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHH---HHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHH---HHHHHHHhhhH
Confidence 67778888889999999999988643 347888888899999999999999876 78888888875
No 210
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.29 Score=39.38 Aligned_cols=130 Identities=11% Similarity=0.093 Sum_probs=86.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHH
Q 036107 137 VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD 216 (441)
Q Consensus 137 i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 216 (441)
.....+.|+++.|.++.+++ . +...|..|-....+.|+++-|++.|...++ +.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l---~----------------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~ 64 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL---N----------------DSITWERLIQEALAQGNASLAEMIYQTQHS--------FD 64 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH---C----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HH
T ss_pred HHHHHhcCCHHHHHHHHHHh---C----------------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HH
Confidence 34455678888888887654 3 667888888888888888888888888875 67
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036107 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296 (441)
Q Consensus 217 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 296 (441)
.+.--|.-.|+.+...++-+.-...| -++.....+...|+++++.++|.+. |..|....+ ....|
T Consensus 65 ~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~~------A~t~g 129 (177)
T 3mkq_B 65 KLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYAV------AKANG 129 (177)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHHH------HHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHHH------HHHcC
Confidence 77777777788777666655444433 2555566666778888888887553 222322221 12246
Q ss_pred CHHHHHHHHHHH
Q 036107 297 QIYEALKVYEKM 308 (441)
Q Consensus 297 ~~~~a~~~~~~m 308 (441)
..+.|.++.+++
T Consensus 130 ~~~~a~~~~~~~ 141 (177)
T 3mkq_B 130 DEAAASAFLEQA 141 (177)
T ss_dssp CHHHHHHHHHHT
T ss_pred cHHHHHHHHHHh
Confidence 666777776665
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.02 E-value=0.037 Score=40.02 Aligned_cols=61 Identities=11% Similarity=0.057 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107 178 TRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEM 238 (441)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 238 (441)
...+..+-..+.+.|++++|+..|++.-...+.+...|..+-.+|.+.|++++|.+.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444555555555555554442222223334444444455555555555544443
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.92 E-value=0.02 Score=45.45 Aligned_cols=99 Identities=11% Similarity=0.056 Sum_probs=67.5
Q ss_pred HcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhhhCCCC
Q 036107 141 GKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSV----------AHAYKVFLKFKDCISL 210 (441)
Q Consensus 141 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~~~~~~~~ 210 (441)
.+.+++++|.+.++...+..+. +...|..+-.++...+++ ++|+..|++.-.-.+-
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~--------------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~ 78 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL--------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence 3446788999999998886633 677888777788777664 5777777776443344
Q ss_pred cHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 036107 211 SSQIFDVLIHGWCKTR-----------KSDYAQKAMKEMFQHGFSPDGVSYTCFIE 255 (441)
Q Consensus 211 ~~~~~~~li~~~~~~~-----------~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 255 (441)
+...|..+-.+|...| ++++|.+.|++..+ +.|+...|..-+.
T Consensus 79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 6667777777777654 67777777777766 3566555544433
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.87 E-value=0.039 Score=52.12 Aligned_cols=93 Identities=9% Similarity=-0.035 Sum_probs=73.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC--C-CCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HH
Q 036107 218 LIHGWCKTRKSDYAQKAMKEMFQH--G-FSPD----GVSYTCFIEHYCREKDFRKVDYTLKEMQEK-----G-CKPS-VI 283 (441)
Q Consensus 218 li~~~~~~~~~~~a~~~~~~m~~~--g-~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g-~~p~-~~ 283 (441)
.+..+.+.|++++|+.++++..+. . +.|+ ..+++.+..+|...|++++|+.++++..+- | -.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355667789999999999988753 1 2222 468999999999999999999999987542 2 2233 56
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 284 TCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 284 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
+++.|-..|...|++++|+.++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 789999999999999999999988754
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.80 E-value=0.058 Score=50.92 Aligned_cols=87 Identities=5% Similarity=-0.148 Sum_probs=68.2
Q ss_pred hcCCHHHHHHHHHHHhh---CCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHH
Q 036107 224 KTRKSDYAQKAMKEMFQ---HGFSPD----GVSYTCFIEHYCREKDFRKVDYTLKEMQEK-----G-CKPS-VITCTIVM 289 (441)
Q Consensus 224 ~~~~~~~a~~~~~~m~~---~g~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g-~~p~-~~~~~~ll 289 (441)
..|++++|+.++++..+ .-+-|+ ..+++.|..+|...|++++|+.++++..+- | -.|+ ..+++.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35788999999988764 212222 468999999999999999999999987542 2 2233 56799999
Q ss_pred HHHHhcCCHHHHHHHHHHHhh
Q 036107 290 HALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 290 ~~~~~~~~~~~a~~~~~~m~~ 310 (441)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998754
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.71 E-value=0.04 Score=52.01 Aligned_cols=93 Identities=13% Similarity=-0.004 Sum_probs=59.8
Q ss_pred cCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh----h----CCCCcHH
Q 036107 142 KSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK----D----CISLSSQ 213 (441)
Q Consensus 142 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~----~~~~~~~ 213 (441)
..|++++|..++++..+........... ....+++.|..+|...|++++|+.++++.- . ..+-...
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp------~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 383 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNV------YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS 383 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhch------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 4578888998888876642111110000 034678888888888888888888887651 1 1222344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 214 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
+++.|-..|...|++++|+.+|++..+
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 577777777788888887777776643
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.67 E-value=0.069 Score=50.40 Aligned_cols=100 Identities=10% Similarity=-0.011 Sum_probs=68.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh----h----
Q 036107 135 AMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK----D---- 206 (441)
Q Consensus 135 ~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~---- 206 (441)
..+..+.+.|++++|.+++++..+.......... .....+++.|..+|...|++++|+.++++.- .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h------~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDIN------IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTS------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccc------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence 3456677889999999999998764311111000 0035678888999999999999999887651 1
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 207 CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 207 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
..+....+++.|-..|...|++++|+.++++..+
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1222444577777888888888888887776653
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.16 E-value=0.29 Score=44.63 Aligned_cols=132 Identities=13% Similarity=0.008 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHcC-----CChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHH----hcC-CHHHH
Q 036107 128 HTPETYNAMVEALGKS-----KKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLV----KRN-SVAHA 197 (441)
Q Consensus 128 p~~~~y~~li~~~~~~-----~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g-~~~~a 197 (441)
.+...|...+.+.... .+..+|.++|++..+..|... ..+..+.-++. ..+ .....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a--------------~A~A~la~a~~~~~~~~~~~~~~~ 257 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFT--------------YARAEKALVDIVRHSQHPLDEKQL 257 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCH--------------HHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCH--------------HHHHHHHHHHHHHhccCCCchhhH
Confidence 4677888888766432 345789999999999775543 33333222222 000 00111
Q ss_pred HH---HHHHh--hhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036107 198 YK---VFLKF--KDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272 (441)
Q Consensus 198 ~~---~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 272 (441)
.. .+... ....+.+..+|.++-..+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++
T Consensus 258 ~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 258 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp HHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 11 11110 01223444455555444444455555555555555532 4544444444555555555555555555
Q ss_pred HHH
Q 036107 273 MQE 275 (441)
Q Consensus 273 m~~ 275 (441)
...
T Consensus 336 Alr 338 (372)
T 3ly7_A 336 AFN 338 (372)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 218
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.11 E-value=0.052 Score=43.01 Aligned_cols=98 Identities=8% Similarity=0.004 Sum_probs=61.6
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCH----------HHHHHHHHHHhhCCCCC-CHhhHHHHHHHH
Q 036107 189 VKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKS----------DYAQKAMKEMFQHGFSP-DGVSYTCFIEHY 257 (441)
Q Consensus 189 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~g~~p-~~~~~~~li~~~ 257 (441)
.+.+.+++|.+.++..-...+.+...|..+-.++...+++ ++|...|++..+. .| +...|..+-.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 3456777788777776444455677777776777766654 4777777777663 34 345677777777
Q ss_pred HhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107 258 CREK-----------DFRKVDYTLKEMQEKGCKPSVITCTIVMH 290 (441)
Q Consensus 258 ~~~g-----------~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 290 (441)
...| ++++|.+.|++..+. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 6653 677777777776653 355444444433
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.85 E-value=1.2 Score=35.74 Aligned_cols=103 Identities=12% Similarity=0.054 Sum_probs=76.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 036107 186 DTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK 265 (441)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 265 (441)
....+.|+++.|.++-+.+ .+...|..|-......|+++-|.+.|..... |..+.--|.-.|+.++
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 4556789999999888776 3566799999999999999999999988764 4556666667788877
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107 266 VDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKM 308 (441)
Q Consensus 266 a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 308 (441)
..++-+.-...|- ++....++.-.|+++++.++|.+.
T Consensus 79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 7766665555542 456666677788999988887543
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.48 E-value=1.6 Score=39.70 Aligned_cols=139 Identities=6% Similarity=-0.099 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHh--c---CCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHh----cC-C---HHHHHHHHHHHhh-CC
Q 036107 177 DTRAMSVLMDTLVK--R---NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCK----TR-K---SDYAQKAMKEMFQ-HG 242 (441)
Q Consensus 177 ~~~~~~~li~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~-~---~~~a~~~~~~m~~-~g 242 (441)
+...|...+.+... . ....+|..+|++.-..-+-....|..+--+|.- .+ . .....+.++.... ..
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~ 272 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence 56777777766543 2 335788999988744333344455544333321 11 1 1111112222111 12
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 036107 243 FSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF 319 (441)
Q Consensus 243 ~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 319 (441)
-+.+..+|..+-..+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++.... .|...+
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 35577888888777777899999999999999886 78888888888899999999999999988875 344444
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.41 E-value=0.2 Score=35.61 Aligned_cols=53 Identities=9% Similarity=0.204 Sum_probs=24.6
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 188 LVKRNSVAHAYKVFLKFKDCISLSSQ-IFDVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 188 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
+.+.|++++|.+.|+......+.+.. .+..+-.+|.+.|++++|.+.|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555444322223333 444444445555555555555555443
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.41 E-value=0.13 Score=36.63 Aligned_cols=81 Identities=7% Similarity=-0.044 Sum_probs=57.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHH
Q 036107 137 VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTR-AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIF 215 (441)
Q Consensus 137 i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 215 (441)
...+.+.|++++|.+.|++..+..+. +.. .+..+-.++...|++++|.+.|++.-...+.+...+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~--------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV--------------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS--------------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC--------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 44567889999999999999886522 566 888889999999999999999998744223333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 216 DVLIHGWCKTRKSDYAQKAMKEMF 239 (441)
Q Consensus 216 ~~li~~~~~~~~~~~a~~~~~~m~ 239 (441)
.. +.+.++...|++..
T Consensus 73 ~~--------~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 73 AR--------KMVMDILNFYNKDM 88 (99)
T ss_dssp HH--------HHHHHHHHHHCCTT
T ss_pred HH--------HHHHHHHHHHHHHh
Confidence 11 44555555555443
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.53 E-value=0.7 Score=36.14 Aligned_cols=82 Identities=18% Similarity=0.047 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 036107 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREK---DFRKVDYTLKEMQEKGCKP--SVITCTIVMHALEKAKQIYEAL 302 (441)
Q Consensus 228 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~l~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~ 302 (441)
+..+.+-|.+....|. ++..+.-.+-.++++++ +.+++..+|++..+.. .| +...+-.+--+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555655555444 56666666666677766 5567777777776654 23 2344445555667888888888
Q ss_pred HHHHHHhhC
Q 036107 303 KVYEKMKSD 311 (441)
Q Consensus 303 ~~~~~m~~~ 311 (441)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888877774
No 224
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.09 E-value=1.3 Score=41.01 Aligned_cols=67 Identities=7% Similarity=0.026 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 036107 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE-----KGCKPSVIT 284 (441)
Q Consensus 217 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g~~p~~~~ 284 (441)
.++..+...|+++++...+..+... -+.+...|..+|.++.+.|+..+|++.|+...+ .|+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445555556666665555555432 122445566666666666666666665555432 256655543
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.41 E-value=0.82 Score=33.03 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=9.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 036107 285 CTIVMHALEKAKQIYEALKVYEKM 308 (441)
Q Consensus 285 ~~~ll~~~~~~~~~~~a~~~~~~m 308 (441)
+..+..++.+.|+++.|...+++.
T Consensus 49 ~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 49 LDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Confidence 333333333444444444433333
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.15 E-value=1.1 Score=32.23 Aligned_cols=67 Identities=10% Similarity=-0.054 Sum_probs=56.4
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107 210 LSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH------GFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
.+...+-.|-..+.+.|+++.|..+|+...+. +-.+....+..+..++.+.|++++|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 56667778889999999999999999987753 11245678899999999999999999999999886
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.13 E-value=1.7 Score=30.69 Aligned_cols=65 Identities=6% Similarity=-0.000 Sum_probs=37.0
Q ss_pred CHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 246 DGVSYTCFIEHYCREKD---FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 246 ~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
|...+..+-.++...++ .++|..++++..+.... +......+-..+.+.|++++|...|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555543333 56666666666554322 4455555556666666666666666666654
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.70 E-value=2.5 Score=29.77 Aligned_cols=63 Identities=14% Similarity=0.068 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHcCCC---hhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 036107 129 TPETYNAMVEALGKSKK---FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK 205 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~---~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 205 (441)
|+..+..+-.++...++ .++|..+|++..+..+. ++.+...+-..+.+.|++++|...|+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~--------------~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY--------------NEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444444433322 56667777666665422 45556666666666666666666666663
No 229
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.28 E-value=8.9 Score=35.29 Aligned_cols=80 Identities=9% Similarity=0.061 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH--CCCCCCHHHHHHHH
Q 036107 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS--KGIVPQESTHKMLA 413 (441)
Q Consensus 336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~--~~~~p~~~~~~~ll 413 (441)
...++..+...|+.++|+..+....... .-+...+..+|.++.+.|+..+|.+.|+.+.+... .|+.|+..+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 5667788889999999999999887542 45777999999999999999999999888877653 49999988755444
Q ss_pred HHH
Q 036107 414 EEL 416 (441)
Q Consensus 414 ~~~ 416 (441)
..+
T Consensus 253 ~il 255 (388)
T 2ff4_A 253 RIL 255 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.04 E-value=3.1 Score=32.28 Aligned_cols=102 Identities=10% Similarity=0.032 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHhhhCCCCcHH-HHHHHHHHH------HhcCCHHHHHHHHHHHhhCCC
Q 036107 177 DTRAMSVLMDTLVKRNSV------AHAYKVFLKFKDCISLSSQ-IFDVLIHGW------CKTRKSDYAQKAMKEMFQHGF 243 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~------~~a~~~~~~~~~~~~~~~~-~~~~li~~~------~~~~~~~~a~~~~~~m~~~g~ 243 (441)
|..+|-..+...-+.|+. ++..++|++.-..++|+.. .|...|..+ ...+++++|.++|+.+.+.+=
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 677777777777777887 7777788776555566531 111111111 122455556666655543211
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036107 244 SPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCK 279 (441)
Q Consensus 244 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 279 (441)
.- ...|...-.-=.+.|++.+|.+++..-...+.+
T Consensus 92 kF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 92 KF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 11 333333333334555566666666555555444
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=90.85 E-value=1.2 Score=34.85 Aligned_cols=82 Identities=13% Similarity=0.056 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCC--CHhhHHHHHHHHHhcCCHHHHHH
Q 036107 194 VAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTR---KSDYAQKAMKEMFQHGFSP--DGVSYTCFIEHYCREKDFRKVDY 268 (441)
Q Consensus 194 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~ 268 (441)
...+.+-|.+....-.++..+.-.+--++++++ +++++..+|++..+.. .| +...+-.+--+|.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 445555565543333478888888888899988 6779999999998864 24 23445555567799999999999
Q ss_pred HHHHHHHc
Q 036107 269 TLKEMQEK 276 (441)
Q Consensus 269 l~~~m~~~ 276 (441)
.++.+.+.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999875
No 232
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.79 E-value=20 Score=38.39 Aligned_cols=224 Identities=8% Similarity=0.011 Sum_probs=129.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC------------------
Q 036107 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP------------------ 245 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p------------------ 245 (441)
++..+.+.+..+.+.++....+. +...-=.+-.+|...|++++|.+.|.+... |+..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~~----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLNS----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSCC----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhccC----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccc
Confidence 44455556666655554444322 222212223455566666666666655321 1110
Q ss_pred -----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 246 -----DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC-K-PS--VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 246 -----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~-p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 316 (441)
-..=|..++.-+-+.+.++.+.++-+...+... . ++ ...|..+++++...|++++|...+-.+.....+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence 112367778888888888888887776554322 1 11 125889999999999999999999888876544
Q ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHH-HhcCChhhHHH-HHH
Q 036107 317 TSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDS--CKPDCETHARSLKMC-CHKKRMKDGML-VLN 392 (441)
Q Consensus 317 ~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~-~~~g~~~~a~~-~~~ 392 (441)
......++..+|..|. ...|+ .+--.|..+++.+++...-+.- +... ..|..++.++ ...|++..|-. +++
T Consensus 971 ~~cLr~LV~~lce~~~---~~~L~-~lpf~gl~~~Vd~IL~~kAr~~~~~~~~-p~Yy~iLYs~ri~r~dyR~AA~vmYe 1045 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGK---INQLL-NYSMPTLRQDVDNLLERKAFQMINVESQ-PCWYNILFSWRYKHQNYRDAAAIIYE 1045 (1139)
T ss_dssp HHHHHHHHHHHHHHCC---HHHHH-HHTTTSCHHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC---hhhhh-CCCCccHHHHHHHHHHHHHHhCCccccC-CCHHHHhHhhhhccCChHHHHHHHHH
Confidence 4566778888888777 34444 3445677778888876543211 1111 1244445444 46677766544 444
Q ss_pred HHHHHHHCCCCCC-------HHHHHHHHHHHHhc
Q 036107 393 LMREMLSKGIVPQ-------ESTHKMLAEELEKK 419 (441)
Q Consensus 393 ~~~~m~~~~~~p~-------~~~~~~ll~~~~~~ 419 (441)
...++...+-.+. ...|.++|+++.-.
T Consensus 1046 ~~~RL~~~~~~~~~~~~~~q~~~yL~~INaLslv 1079 (1139)
T 4fhn_B 1046 KLSRYISTTELIGKKERTFIIEHYLIVLNTLELL 1079 (1139)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhccccccchhHHHHHHHHHHHHHHHhcC
Confidence 4444433211122 34677777776544
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.34 E-value=4.5 Score=31.42 Aligned_cols=105 Identities=7% Similarity=-0.018 Sum_probs=74.6
Q ss_pred CcHHHHHHHHHHHHhcCCH------HHHHHHHHHHhhCCCCCCHh----hHHHHHHH---HHhcCCHHHHHHHHHHHHHc
Q 036107 210 LSSQIFDVLIHGWCKTRKS------DYAQKAMKEMFQHGFSPDGV----SYTCFIEH---YCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 210 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~g~~p~~~----~~~~li~~---~~~~g~~~~a~~l~~~m~~~ 276 (441)
-|..+|=..+...-+.|+. ++..++|++.... ++|+.. .|.-|--- +...++.++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3555677777777777887 7888888877653 555532 11111111 12347899999999999877
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 277 GCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 277 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 316 (441)
+-+. ...|..-.+-=.+.|++..|.+++......+.+|.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 5554 77777777777889999999999999999887773
No 234
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.23 E-value=34 Score=36.52 Aligned_cols=201 Identities=11% Similarity=0.000 Sum_probs=113.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC---------------
Q 036107 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE----KGC--------------- 278 (441)
Q Consensus 218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~--------------- 278 (441)
++..+.+.+..+.+.++..-.. .+...--.+-.++...|++++|...|++.-. .+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 4444555555555555443332 2333333444567788999999999976421 000
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHH
Q 036107 279 ---KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKL 355 (441)
Q Consensus 279 ---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~ 355 (441)
..-..-|..++..+.+.+.++.+.++-....+..-.-+...-. ..|..+.+++...|++++|...
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~------------~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSI------------AITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHH------------HHHHHHHHHHHHHCCSGGGGHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHH------------HHHHHHHHHHHhhCCHHHHHHH
Confidence 0112346777778888888888887776655432111211000 2388888999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH-----HHHHHHHH----H-C-CCCCCHHHHHHHHHHHHhcCCccH
Q 036107 356 RQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLV-----LNLMREML----S-K-GIVPQESTHKMLAEELEKKSLGNA 424 (441)
Q Consensus 356 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~-----~~~~~~m~----~-~-~~~p~~~~~~~ll~~~~~~g~~~~ 424 (441)
+-.+.....+ ...+..|+..+|..|..+.-..+ .+.+++.. . . .......-|..|-.-....|++..
T Consensus 961 L~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~ 1038 (1139)
T 4fhn_B 961 LMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRD 1038 (1139)
T ss_dssp HHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSC
T ss_pred HHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHH
Confidence 8888765443 45577788877777665443221 11111111 1 1 112122335556555667777766
Q ss_pred HH-HHHHHHHHHhh
Q 036107 425 KE-RIDELLTHATE 437 (441)
Q Consensus 425 a~-~~~~~m~~~~~ 437 (441)
|- -+++...|..+
T Consensus 1039 AA~vmYe~~~RL~~ 1052 (1139)
T 4fhn_B 1039 AAAIIYEKLSRYIS 1052 (1139)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 54 46777776653
No 235
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.12 E-value=2.4 Score=30.25 Aligned_cols=62 Identities=13% Similarity=0.225 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036107 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEEL 416 (441)
Q Consensus 351 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~ 416 (441)
++.+-++.+....+.|+.....+.+++|.+.+++..|.++++.++. +-|- ...+|..+++-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~--K~~~--~~~iY~~~lqEl 89 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD--KAGP--HKEIYPYVIQEL 89 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTT--CTTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HhcC--chhhHHHHHHHH
Confidence 4555555556667778888888888888888888888776665554 2222 234566666543
No 236
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.09 E-value=6.5 Score=28.07 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290 (441)
Q Consensus 227 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 290 (441)
+.-+..+-++.+....+.|++.+..+.+.+|.+.+++.-|.++|+-++..-- +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHH
Confidence 4556677777777777778888888888888888888888888877765421 12345655553
No 237
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=85.61 E-value=18 Score=31.66 Aligned_cols=108 Identities=7% Similarity=-0.003 Sum_probs=78.3
Q ss_pred CcHHHHHHHHH-HHHhc--CC------HHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHh-----cCCHHHHHHHHHH
Q 036107 210 LSSQIFDVLIH-GWCKT--RK------SDYAQKAMKEMFQHGFSPD---GVSYTCFIEHYCR-----EKDFRKVDYTLKE 272 (441)
Q Consensus 210 ~~~~~~~~li~-~~~~~--~~------~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~-----~g~~~~a~~l~~~ 272 (441)
+....|..++. .++.. |+ ...|..++++..+ +.|+ ...|+.+...|.+ -|+.++|.+.|++
T Consensus 152 ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fer 229 (301)
T 3u64_A 152 VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEH 229 (301)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHH
Confidence 34445666654 34432 33 4566677777766 4566 5688899888988 4999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCC--CCHHH
Q 036107 273 MQEKGCKPSVITCTIVMHALEKA-KQIYEALKVYEKMKSDDCL--TDTSF 319 (441)
Q Consensus 273 m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~--~~~~~ 319 (441)
..+.+-.-+..++......+++. |+.+++.+.+++....... |+...
T Consensus 230 AL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 230 LTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp HHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHH
T ss_pred HHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhH
Confidence 98865432467777788888884 9999999999999987766 65443
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.47 E-value=24 Score=33.06 Aligned_cols=196 Identities=13% Similarity=0.093 Sum_probs=124.9
Q ss_pred hHHHHHHHhhhhhHhhhh--cCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHH
Q 036107 105 PDKVVEALKCFCFTWAKT--QTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMS 182 (441)
Q Consensus 105 ~g~~~~A~~~~~~~~~~~--~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (441)
.|++..|++.+-...... .....-.......++..|.+.|+++...+.+.-+.... +.... . .....+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-~qlk~-a--------i~~~V~ 98 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-GQLKL-S--------IQYMIQ 98 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-TTSHH-H--------HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hhhHH-H--------HHHHHH
Confidence 467777777664333322 23344457788899999999999999988887766544 22211 0 112223
Q ss_pred HHHHHHHhcCCHH--HHHHHHHHhhh----CCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCC---Hh
Q 036107 183 VLMDTLVKRNSVA--HAYKVFLKFKD----CISL---SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQH--GFSPD---GV 248 (441)
Q Consensus 183 ~li~~~~~~g~~~--~a~~~~~~~~~----~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~ 248 (441)
.++.........+ .-..+.+.++. .+.. .......|...|-..|++.+|.+++.++... |.... +.
T Consensus 99 ~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve 178 (445)
T 4b4t_P 99 KVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQ 178 (445)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHH
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3333333334333 23334443321 2222 2334556788899999999999999998742 32222 35
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 249 SYTCFIEHYCREKDFRKVDYTLKEMQE----KGCKPS--VITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
.|...+..|...+++.+|..+++.... ....|+ ...|...+..+...+++.+|.+.|.+..+
T Consensus 179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 179 FILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 677888899999999999999998743 223333 24566777778889999999888877754
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=85.47 E-value=5.2 Score=34.99 Aligned_cols=109 Identities=8% Similarity=0.010 Sum_probs=73.8
Q ss_pred HHHHHHHHHHH-HcC--CC------hhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhc-----CCHH
Q 036107 130 PETYNAMVEAL-GKS--KK------FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKR-----NSVA 195 (441)
Q Consensus 130 ~~~y~~li~~~-~~~--~~------~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~ 195 (441)
...|..++.+- ... |+ ...|..++++..+..+... +...|..+...|.+. |+.+
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~------------~GsA~~~LG~lY~~vPp~~gGd~e 221 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQ------------EGAVWNVLTKFYAAAPESFGGGME 221 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHH------------HHHHHHHHHHHHHHSCTTTTCCHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcc------------cCHHHHHHHHHHHhCCCccCCCHH
Confidence 44676665533 332 33 4567777777777663322 467888888888884 9999
Q ss_pred HHHHHHHHhhhCCCC--cHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCC--CCHhhHH
Q 036107 196 HAYKVFLKFKDCISL--SSQIFDVLIHGWCKT-RKSDYAQKAMKEMFQHGFS--PDGVSYT 251 (441)
Q Consensus 196 ~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~--p~~~~~~ 251 (441)
+|.+.|++.-.- .| +..++...-..+++. |+.+++.+.+++..+.... |+....+
T Consensus 222 kA~~~ferAL~L-nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 222 KAHTAFEHLTRY-CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHH-CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHh-CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 999999887331 23 355666777778874 8899999999999887655 5543333
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=84.86 E-value=6.1 Score=29.64 Aligned_cols=81 Identities=15% Similarity=0.004 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036107 230 YAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRK---VDYTLKEMQEKGCK-PSVITCTIVMHALEKAKQIYEALKVY 305 (441)
Q Consensus 230 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---a~~l~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~ 305 (441)
.+.+-|.+....|. |+..+--.+-.+++++..... ++.+++++.+.+-+ -.....-.|--++.+.|++++|.+.+
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444443333232 444444444445555554333 55555555554311 01222333444566666666666666
Q ss_pred HHHhhC
Q 036107 306 EKMKSD 311 (441)
Q Consensus 306 ~~m~~~ 311 (441)
+.+.+.
T Consensus 98 ~~lL~~ 103 (126)
T 1nzn_A 98 RGLLQT 103 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666653
No 241
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.77 E-value=11 Score=28.53 Aligned_cols=63 Identities=16% Similarity=0.186 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036107 227 KSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMH 290 (441)
Q Consensus 227 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 290 (441)
|.-+..+-++.+....+.|++.+..+.+.+|.+.+|+.-|.++|+-.+..- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 444567777777777888888888888888888888888888888876652 223445665553
No 242
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=84.73 E-value=6.8 Score=29.38 Aligned_cols=84 Identities=17% Similarity=0.090 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCC--CHhhHHHHHHHHHhcCCHHHH
Q 036107 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDY---AQKAMKEMFQHGFSP--DGVSYTCFIEHYCREKDFRKV 266 (441)
Q Consensus 192 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a 266 (441)
..+..+.+-|......-.++..+--.+--+++++.+... +..++++....+ .| .....-.+--++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344455555554433234777777777778888876655 889999988764 23 233344555688999999999
Q ss_pred HHHHHHHHHc
Q 036107 267 DYTLKEMQEK 276 (441)
Q Consensus 267 ~~l~~~m~~~ 276 (441)
.+.++.+.+.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 243
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=84.51 E-value=10 Score=34.25 Aligned_cols=198 Identities=7% Similarity=0.012 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036107 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD--FRKVDYTLKEMQEKGCKPSVITCTIVMHA 291 (441)
Q Consensus 214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 291 (441)
....+|.-|...++.++|.+.++++..... .......+|......++ -+.+-.++..+.. ++-+.......+...
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~l 132 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKL 132 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 467789999999999999999999865322 12333344443333332 3456667777764 555555555555554
Q ss_pred HHhcCCH----HHHHH----HHHHHhhCCCC-CCHH-----------HHHHHH--HHHHhcC--------------cc--
Q 036107 292 LEKAKQI----YEALK----VYEKMKSDDCL-TDTS-----------FYSSLI--FILSKAV--------------RF-- 333 (441)
Q Consensus 292 ~~~~~~~----~~a~~----~~~~m~~~g~~-~~~~-----------~~~~li--~~~~~~g--------------~~-- 333 (441)
+....+. ..|.. ++.++...++. |... .-.++- ..+.+.. ..
T Consensus 133 le~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~~ 212 (358)
T 3eiq_C 133 LKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQP 212 (358)
T ss_dssp HHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSSSC
T ss_pred HHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCcc
Confidence 4444332 23333 33333333332 2211 001110 1111110 00
Q ss_pred -----chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHH
Q 036107 334 -----LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQEST 408 (441)
Q Consensus 334 -----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~ 408 (441)
...+.+|.-|...|+.++|.+.++++....+.+ ......+..++-+.++. ....+.+++..+...|+.+....
T Consensus 213 veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~-~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 213 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGES-AFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSH-HHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchH-HHHHHHHHHHHHHHCCCCCHHHH
Confidence 456788999999999999999999986322221 23344555555543332 22334567777777777665555
Q ss_pred HHHHHHHH
Q 036107 409 HKMLAEEL 416 (441)
Q Consensus 409 ~~~ll~~~ 416 (441)
...+.+.+
T Consensus 291 ~~Gf~~vl 298 (358)
T 3eiq_C 291 KRGYERIY 298 (358)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.94 E-value=8.3 Score=38.85 Aligned_cols=127 Identities=6% Similarity=0.079 Sum_probs=77.2
Q ss_pred HHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCC-HHHHHHHHHH-hhh--
Q 036107 132 TYNAMVEALGKSKK-FGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNS-VAHAYKVFLK-FKD-- 206 (441)
Q Consensus 132 ~y~~li~~~~~~~~-~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~-~~~-- 206 (441)
....++..+...++ .+.|.++|+++....+.. +......++..+.+.++ --+|.++.++ ++.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~-------------~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~ 316 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIH-------------DIYYKTAMITILDHIETKELDMITILNETLDPLL 316 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGG-------------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCch-------------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Confidence 34556666666666 578999999998855211 11112223333333222 1233333332 211
Q ss_pred ----CCCC-cH----------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHH
Q 036107 207 ----CISL-SS----------QIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPD-GVSYTCFIEHYCREKDFRKVDYTL 270 (441)
Q Consensus 207 ----~~~~-~~----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~l~ 270 (441)
...+ +. ...+.=...+...|+++.|+++-++.... .|+ -.+|..|..+|...|+++.|+-.+
T Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 317 SLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 1111 11 11122234466789999999999988763 465 579999999999999999999999
Q ss_pred HHH
Q 036107 271 KEM 273 (441)
Q Consensus 271 ~~m 273 (441)
+-+
T Consensus 395 NSc 397 (754)
T 4gns_B 395 NSM 397 (754)
T ss_dssp HHS
T ss_pred hcC
Confidence 876
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.01 E-value=15 Score=27.75 Aligned_cols=50 Identities=12% Similarity=0.170 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 262 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
|.-+..+-++.+....+.|+.....+.+.+|-+.+++..|.++|+-.+.+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 45567777788888899999999999999999999999999999998864
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.85 E-value=37 Score=31.78 Aligned_cols=190 Identities=12% Similarity=0.061 Sum_probs=117.7
Q ss_pred CChhHHHHHHHHHHHhc---CCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--CCCCcHHHHHHH
Q 036107 144 KKFGLMWELVKEIDELS---NGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSSQIFDVL 218 (441)
Q Consensus 144 ~~~~~a~~l~~~m~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l 218 (441)
|+++.|++.+-.+.+.. ...++ .......++..|.+.|+++...+.+..+.. +..+.. ...+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s-----------~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~ 96 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLAS-----------SKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYM 96 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTT-----------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhh-----------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHH
Confidence 67888888777766532 12221 567788899999999999999888877632 322222 2333
Q ss_pred HH----HHHhcCCHHH--HHHHHHHHhh--CC-CCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---
Q 036107 219 IH----GWCKTRKSDY--AQKAMKEMFQ--HG-FSP---DGVSYTCFIEHYCREKDFRKVDYTLKEMQEK--GCKPS--- 281 (441)
Q Consensus 219 i~----~~~~~~~~~~--a~~~~~~m~~--~g-~~p---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~--- 281 (441)
++ ........+. -..+.+.... .| +-. .......|...+-..|++.+|.+++.++... |....
T Consensus 97 V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~k 176 (445)
T 4b4t_P 97 IQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEK 176 (445)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHH
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHH
Confidence 33 3333333332 2223322221 11 111 1223456778888999999999999998654 22211
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHH
Q 036107 282 VITCTIVMHALEKAKQIYEALKVYEKMKS----DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQ 357 (441)
Q Consensus 282 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~ 357 (441)
...+...++.|...+++..|..++..... ....|+... ..+..++..+...+++.+|.+.|.
T Consensus 177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~--------------~~~~~~~~~~~~e~~y~~a~~~y~ 242 (445)
T 4b4t_P 177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL--------------EYYNLLVKISLHKREYLEVAQYLQ 242 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH--------------HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH--------------HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 35677788999999999999999988643 222332221 225666667777778887777776
Q ss_pred HHH
Q 036107 358 KIE 360 (441)
Q Consensus 358 ~m~ 360 (441)
+..
T Consensus 243 e~~ 245 (445)
T 4b4t_P 243 EIY 245 (445)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=80.37 E-value=52 Score=33.16 Aligned_cols=129 Identities=12% Similarity=0.027 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCcHHHHH-HHHHHHHhcCC-HHHHHHHHHHHhhC------CCCC-CH--
Q 036107 180 AMSVLMDTLVKRNS-VAHAYKVFLKFKDCISLSSQIFD-VLIHGWCKTRK-SDYAQKAMKEMFQH------GFSP-DG-- 247 (441)
Q Consensus 180 ~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~-~~~a~~~~~~m~~~------g~~p-~~-- 247 (441)
-...++..+...|+ .+.|..+|+++....+.....+. .+|..+.+.++ --+|.+++.+..+. ...+ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 33455555555666 68899999998554333333333 33443333332 22344444443321 1111 11
Q ss_pred --------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 248 --------VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309 (441)
Q Consensus 248 --------~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 309 (441)
.....-...+...|+++-|+++-++.... .+.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222234466789999999999998775 23357899999999999999999999999884
No 248
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=80.21 E-value=5.9 Score=33.07 Aligned_cols=85 Identities=12% Similarity=0.079 Sum_probs=39.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhh-hCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhh--HHHHHHHHH
Q 036107 184 LMDTLVKRNSVAHAYKVFLKFK-DCISLSSQ--IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS--YTCFIEHYC 258 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~ 258 (441)
.+...++.|+.+.+..+++.+. .+..++.. .-.+.+...+..|+.+-+. .+.+.|..++... -.+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR----LLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHHHH
Confidence 3455566677777776666542 23222221 1123344445566654333 3333454444321 112333444
Q ss_pred hcCCHHHHHHHHHH
Q 036107 259 REKDFRKVDYTLKE 272 (441)
Q Consensus 259 ~~g~~~~a~~l~~~ 272 (441)
..|+.+-+..+++.
T Consensus 88 ~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 88 EHRSPTCLRALLDS 101 (241)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHc
Confidence 55666555544444
No 249
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=79.34 E-value=12 Score=33.00 Aligned_cols=75 Identities=5% Similarity=0.063 Sum_probs=44.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 036107 334 LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHK 410 (441)
Q Consensus 334 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~ 410 (441)
...+.++.-|...|+.++|.+.++++......+ ......+..+.-+.++. ....+.+++..+.+.|+.+......
T Consensus 167 kki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~-~re~~~~LL~~L~~~~~ls~~q~~~ 241 (307)
T 2zu6_B 167 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGES-TFKMILDLLKSLWKSSTITVDQMKR 241 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSH-HHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChH-HHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 336789999999999999999999986321111 12333444444443332 2233456777776666655544433
No 250
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.80 E-value=8.7 Score=35.91 Aligned_cols=60 Identities=12% Similarity=0.005 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036107 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKG--CKPSVITCTIVMHALEKAKQIYEALKVYEKM 308 (441)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 308 (441)
++..+-..|.+.|++++|.++|.++.+.. ..--...+-.+|+.+...+++..+.......
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34444444555555555555555554431 1112334444455555555555555555444
No 251
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.74 E-value=6.9 Score=33.55 Aligned_cols=212 Identities=6% Similarity=-0.003 Sum_probs=99.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHH
Q 036107 135 AMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQI 214 (441)
Q Consensus 135 ~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 214 (441)
+.+...++.|+.+.+..+++. +.... ..+...-.+.+...+..|+.+-+..+.+.=..-..++..-
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~----g~~~~----------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g 72 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEG----GANVN----------FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG 72 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT----TCCTT----------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred hHHHHHHHcCCHHHHHHHHHc----CCCcc----------cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence 445566777887766666654 31110 0011112244566677788876665554321111112222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--------
Q 036107 215 FDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG---VSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVI-------- 283 (441)
Q Consensus 215 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-------- 283 (441)
. +.+...+..|+.+-+..+ .+.|..++. ..++. +...+..|+.+-+ +.+.+.|..++..
T Consensus 73 ~-t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~~~~~ 142 (285)
T 1wdy_A 73 A-TPFLLAAIAGSVKLLKLF----LSKGADVNECDFYGFTA-FMEAAVYGKVKAL----KFLYKRGANVNLRRKTKEDQE 142 (285)
T ss_dssp C-CHHHHHHHHTCHHHHHHH----HHTTCCTTCBCTTCCBH-HHHHHHTTCHHHH----HHHHHTTCCTTCCCCCCHHHH
T ss_pred C-CHHHHHHHcCCHHHHHHH----HHcCCCCCccCcccCCH-HHHHHHhCCHHHH----HHHHHhCCCcccccccHHHHH
Confidence 2 234444556776544444 445555443 22333 3444556766544 4444455444321
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHH
Q 036107 284 ----TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKI 359 (441)
Q Consensus 284 ----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m 359 (441)
.-...+...+..|+.+-+..+++. .|..++... ..-.+.+...+..|+.....++++.+
T Consensus 143 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~--------------~~g~t~l~~a~~~~~~~~~~~i~~~L 205 (285)
T 1wdy_A 143 RLRKGGATALMDAAEKGHVEVLKILLDE---MGADVNACD--------------NMGRNALIHALLSSDDSDVEAITHLL 205 (285)
T ss_dssp HTTCCCCCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCC--------------TTSCCHHHHHHHCSCTTTHHHHHHHH
T ss_pred hhccCCCcHHHHHHHcCCHHHHHHHHHh---cCCCCCccC--------------CCCCCHHHHHHHccccchHHHHHHHH
Confidence 011234444556776655544432 144332210 00112233334556656667777778
Q ss_pred HHcCCCCCHHH--HHHHHHHHHhcCChhhH
Q 036107 360 EEDSCKPDCET--HARSLKMCCHKKRMKDG 387 (441)
Q Consensus 360 ~~~g~~p~~~t--~~~li~~~~~~g~~~~a 387 (441)
.+.|..++... -.+.+...++.|..+-+
T Consensus 206 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 235 (285)
T 1wdy_A 206 LDHGADVNVRGERGKTPLILAVEKKHLGLV 235 (285)
T ss_dssp HHTTCCSSCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHcCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence 88887665432 12334444556665544
No 252
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=74.09 E-value=0.26 Score=46.38 Aligned_cols=158 Identities=11% Similarity=0.051 Sum_probs=86.6
Q ss_pred CCCcchhhcccchhcccccCccchhccCCCCCCCCcccccchhhHHHhhhhchhhHHHHHhhhcCchhhHHHHHHHHHhc
Q 036107 22 INPLGCLLCNRHCITNELTGLPSWLKFFDTQSPDEDFVIPSLASWVESLKLNEQSRISSHALSEDHETDVDKVSEILRKR 101 (441)
Q Consensus 22 ~n~~i~~l~~~~~~~~~a~~l~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~ 101 (441)
.+.++-++.+.+++. +..++.. .|+..-.-.+=+-|-..|..+.|+-++..+...+. |...
T Consensus 119 DteLi~ayAk~~rL~-elEefl~--------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~ak----------LAst 179 (624)
T 3lvg_A 119 ETELIFALAKTNRLA-ELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGR----------LAST 179 (624)
T ss_dssp THHHHHHHHTSCSSS-TTTSTTS--------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTT----------TSSS
T ss_pred HHHHHHHHHhhCcHH-HHHHHHc--------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHH----------HHHH
Confidence 344555566666665 3333332 35666666666667677777777777665444331 2234
Q ss_pred CCChHHHHHHHhhhhhHhhhhcCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHH
Q 036107 102 YPSPDKVVEALKCFCFTWAKTQTGYMHTPETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAM 181 (441)
Q Consensus 102 ~~~~g~~~~A~~~~~~~~~~~~~g~~p~~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (441)
+.+-|++..|.+.-+ + .-++.+|-.+-.+|...+.+..|.-.--.+.-.... .
T Consensus 180 LV~L~~yq~AVdaAr------K---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhade------------------L 232 (624)
T 3lvg_A 180 LVHLGEYQAAVDGAR------K---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE------------------L 232 (624)
T ss_dssp SSSCSGGGSSTTTTT------T---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC------------------C
T ss_pred HHHHHHHHHHHHHHH------h---cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH------------------H
Confidence 445555544443321 1 126678888888888888887776655554432211 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhc
Q 036107 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKT 225 (441)
Q Consensus 182 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 225 (441)
..++..|-+.|.+++.+++++.--..-+.....|+-|--.|+|-
T Consensus 233 ~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 233 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp SGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 23444555666666666666543222234555555555555554
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.25 E-value=33 Score=31.88 Aligned_cols=96 Identities=10% Similarity=0.026 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCCCHh----
Q 036107 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKD---CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQ---HGFSPDGV---- 248 (441)
Q Consensus 179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~---- 248 (441)
.+...+...|.+.|+.+.|.+.+.+++. +..--...+-.+|+.+...+++..+...+.+... .+-.|+..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3566788899999999999999999854 3344456688889999999999999999888753 23223222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036107 249 SYTCFIEHYCREKDFRKVDYTLKEMQEK 276 (441)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~l~~~m~~~ 276 (441)
.|..++ +...+++..|-..|-+....
T Consensus 212 ~~~gl~--~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIH--CLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHG--GGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHhChHHHHHHHHHHHhcc
Confidence 122222 33568899998888887554
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.61 E-value=65 Score=29.53 Aligned_cols=131 Identities=5% Similarity=0.018 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh--CCC---CcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHhhH--
Q 036107 179 RAMSVLMDTLVKRNSVAHAYKVFLKFKD--CIS---LSSQIFDVLIHGWCKTR-KSDYAQKAMKEMFQHGFSPDGVSY-- 250 (441)
Q Consensus 179 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~---~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~-- 250 (441)
.....|...|.+.|+.++..+++...+. ... -.......+|..+.... ..+.-.++..+..+-.- -.-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4566788899999999999999988754 112 24445778888887754 34444444444432100 011233
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 251 ----TCFIEHYCREKDFRKVDYTLKEMQEKGCKPS-----VITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 251 ----~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
.-+..-|...|++.+|.+++.++.+.-.+.| ...|..-++.|...+++.++...+.....
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 3678889999999999999999977522222 34566777889999999999999988754
No 255
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=66.74 E-value=23 Score=28.40 Aligned_cols=129 Identities=12% Similarity=0.059 Sum_probs=68.0
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh---hHHHHHHHHHh-cCC
Q 036107 187 TLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV---SYTCFIEHYCR-EKD 262 (441)
Q Consensus 187 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~-~g~ 262 (441)
..++.|+++....++..-.. ..+...-.+.+...+..|+.+.-.++.+.+.+.|..++.. -++.|..++.. ..+
T Consensus 12 ~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~ 89 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGND 89 (186)
T ss_dssp HHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTC
T ss_pred HHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcc
Confidence 44567888876666643211 1111112234555566677776677777777788776653 23444433333 233
Q ss_pred HHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCH-HHHHHHHHHHhh-CCCCCCH
Q 036107 263 FRKVDYTLKEMQEKGCKPSVI---TCTIVMHALEKAKQI-YEALKVYEKMKS-DDCLTDT 317 (441)
Q Consensus 263 ~~~a~~l~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~-~~a~~~~~~m~~-~g~~~~~ 317 (441)
.....++.+.+.+.|..++.. -.++.+...+..+.. .....+++.+.+ .|..++.
T Consensus 90 ~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~ 149 (186)
T 3t8k_A 90 ITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149 (186)
T ss_dssp HHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC
T ss_pred hhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc
Confidence 455566777777777666542 221223322333322 334456666666 6665543
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=66.62 E-value=71 Score=28.47 Aligned_cols=146 Identities=11% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh-----h
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-----K 205 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~ 205 (441)
..|.++..=|.+.+++++|++++..--. .+.+.|+...|-++-..+ +
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~----------------------------~ll~~~Q~~sg~DL~~llvevy~~ 87 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQ----------------------------TLLRSGQGGSGGDLAVLLVDTFRQ 87 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH----------------------------HHHHCCCcchHHHHHHHHHHHHHH
Q ss_pred hCCCCcHHHHHHHHHHHHhcCC--------HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036107 206 DCISLSSQIFDVLIHGWCKTRK--------SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKG 277 (441)
Q Consensus 206 ~~~~~~~~~~~~li~~~~~~~~--------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 277 (441)
.+.++|......|+..+..... +.+|.++=.+ ....-.-|......+-..|.+.+++.+|...|- .|
T Consensus 88 ~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg 162 (336)
T 3lpz_A 88 AGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LG 162 (336)
T ss_dssp HTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TS
T ss_pred cCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hc
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 278 CKPSVITCTIVMHALEKAKQIYEALKVYEKMK 309 (441)
Q Consensus 278 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 309 (441)
-.++..+|..++--+...+...++--+..+.+
T Consensus 163 ~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaV 194 (336)
T 3lpz_A 163 TKESPEVLARMEYEWYKQDESHTAPLYCARAV 194 (336)
T ss_dssp CTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhcCCccHHHHHHHHH
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=66.48 E-value=39 Score=25.46 Aligned_cols=73 Identities=8% Similarity=-0.017 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 036107 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHA 435 (441)
Q Consensus 363 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 435 (441)
+-.|+..|--....++.+....+...+-+.++.+....+-.-.....-.|.-++.+.|++++|.+..+.+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4456666666667777777766555555556666655442112334555666778888888888877776543
No 258
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=66.30 E-value=12 Score=33.65 Aligned_cols=26 Identities=8% Similarity=0.213 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 036107 180 AMSVLMDTLVKRNSVAHAYKVFLKFK 205 (441)
Q Consensus 180 ~~~~li~~~~~~g~~~~a~~~~~~~~ 205 (441)
....++.-|...|+.++|.+.++++.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 34556666666777777777776664
No 259
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=65.98 E-value=11 Score=31.29 Aligned_cols=117 Identities=13% Similarity=0.101 Sum_probs=58.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh----hHHHHHHHHHhc
Q 036107 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV----SYTCFIEHYCRE 260 (441)
Q Consensus 185 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~ 260 (441)
+...++.|+.+....+++.-..-..++.. -.+.+...++.|+.+-+..+++ .|..++.. ..+ .+...+..
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~t-~L~~A~~~ 86 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVRQPDKE-NVTLLHWAAINNRIDLVKYYIS----KGAIVDQLGGDLNST-PLHWATRQ 86 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCBTTTTBC-HHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHcCCCcCCCCCC-CCCHHHHHHHhCCHHHHHHHHH----cCCcchhhcCCcCCC-hhHHHHHc
Confidence 34466788888877776542111112221 2234566677788766655554 33333221 223 34445556
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 261 KDFRKVDYTLKEMQEKGCKPSV---ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 261 g~~~~a~~l~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 316 (441)
|+.+-+. .+.+.|..++. ...+ .+...+..|+.+-+ +.+.+.|..++
T Consensus 87 ~~~~~v~----~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~~----~~Ll~~~~~~~ 136 (240)
T 3eu9_A 87 GHLSMVV----QLMKYGADPSLIDGEGCS-CIHLAAQFGHTSIV----AYLIAKGQDVD 136 (240)
T ss_dssp TCHHHHH----HHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHH----HHHHHTTCCTT
T ss_pred CCHHHHH----HHHHcCCCCcccCCCCCC-HHHHHHHcCHHHHH----HHHHhcCCCcc
Confidence 7765444 44445554442 2222 34444556776544 44444555443
No 260
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=65.58 E-value=21 Score=29.56 Aligned_cols=159 Identities=7% Similarity=-0.015 Sum_probs=80.0
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHH
Q 036107 137 VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFD 216 (441)
Q Consensus 137 i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 216 (441)
+...++.|+.+.+..+++.+...+...- ..|..- .+.+...+..|+.+-+..+.+.=..-...+..-.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~- 80 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD----------IYNNLR-QTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ- 80 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC----------CCCTTS-CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC----------cccccC-CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC-
Confidence 4556677898888888887666442211 012211 2345556677888766655543211111122112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHH
Q 036107 217 VLIHGWCKTRKSDYAQKAMKEMFQHGFSPD---GVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT---CTIVMH 290 (441)
Q Consensus 217 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~---~~~ll~ 290 (441)
+.+...+..|+.+-+..+++.....++.++ ....+. +...+..|+.+-+ +.+.+.|..++... ..+.+.
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~g~t~L~ 155 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQETV----QLLLERGADIDAVDIKSGRSPLI 155 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHHH----HHHHHTTCCTTCCCTTTCCCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHHH----HHHHHcCCCcccccccCCCcHHH
Confidence 334555678888877777776543222222 222333 3344455665544 44444555444211 223344
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 291 ALEKAKQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 291 ~~~~~~~~~~a~~~~~~m~~~g~~~~ 316 (441)
..++.|+.+-+. .+.+.|..++
T Consensus 156 ~A~~~~~~~~v~----~Ll~~g~~~~ 177 (241)
T 1k1a_A 156 HAVENNSLSMVQ----LLLQHGANVN 177 (241)
T ss_dssp HHHHTTCHHHHH----HHHHTTCCTT
T ss_pred HHHHcCCHHHHH----HHHHcCCCCC
Confidence 455667765444 4444565553
No 261
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=63.08 E-value=17 Score=30.88 Aligned_cols=120 Identities=11% Similarity=0.020 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---hhHHHHHHHH
Q 036107 182 SVLMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG---VSYTCFIEHY 257 (441)
Q Consensus 182 ~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~ 257 (441)
+..+...++.|+.+....+++.-.. ....+.. -.+.+...+..|+.+-+..++ +.|..++. ...+. +...
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~-L~~A 79 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-GWTPLHNAVQMSREDIVELLL----RHGADPVLRKKNGATP-FLLA 79 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTT-CCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCH-HHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCC-CCcHHHHHHHcCCHHHHHHHH----HcCCCCcccCCCCCCH-HHHH
Confidence 3456677888999887777764321 1111211 123455566778775554444 45655543 22333 4444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 258 CREKDFRKVDYTLKEMQEKGCKPSV---ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 258 ~~~g~~~~a~~l~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 316 (441)
+..|+.+-+ +.+.+.|..++. ..++. +...+..|+.+-+ +.+.+.|..++
T Consensus 80 ~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~~~~ 132 (285)
T 1wdy_A 80 AIAGSVKLL----KLFLSKGADVNECDFYGFTA-FMEAAVYGKVKAL----KFLYKRGANVN 132 (285)
T ss_dssp HHHTCHHHH----HHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHHHH----HHHHHTTCCTT
T ss_pred HHcCCHHHH----HHHHHcCCCCCccCcccCCH-HHHHHHhCCHHHH----HHHHHhCCCcc
Confidence 556766544 444455654432 22223 3344566776544 44445554443
No 262
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=62.44 E-value=29 Score=28.50 Aligned_cols=181 Identities=9% Similarity=-0.128 Sum_probs=92.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCCCHhhHHHHHHHHH
Q 036107 184 LMDTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG----FSPDGVSYTCFIEHYC 258 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~ 258 (441)
.+...++.|+.+.+..+++.-... ...|..-++ .+...+..|+.+-+..+++.-.... -..|..-++.| ...+
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L-~~A~ 83 (232)
T 2rfa_A 6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGET-ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL-HIAV 83 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH-HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH-HHHH
Confidence 355667788888887777652111 112222223 3455566788877777766532210 01122333444 4445
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHH---------------HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 036107 259 REKDFRKVDYTLKEMQEKGCKPSVI---------------TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSL 323 (441)
Q Consensus 259 ~~g~~~~a~~l~~~m~~~g~~p~~~---------------~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 323 (441)
..|+.+-+..+ .+.|..++.. .-.+.+...+..|+.+-+. .+.+.|..++...
T Consensus 84 ~~~~~~~v~~L----l~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~ga~~~~~d---- 151 (232)
T 2rfa_A 84 INQNVNLVRAL----LARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVR----LLIEHGADIRAQD---- 151 (232)
T ss_dssp HTTCHHHHHHH----HHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHH----HHHHTTCCTTCCC----
T ss_pred HcCCHHHHHHH----HhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCCC----
Confidence 56776644444 4455544432 1122344445567765444 4445565554221
Q ss_pred HHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHhcCChhhHHH
Q 036107 324 IFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP---------DCETHARSLKMCCHKKRMKDGML 389 (441)
Q Consensus 324 i~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---------~~~t~~~li~~~~~~g~~~~a~~ 389 (441)
..-.+-+...+..|+.+.+..+++.+.+.|..+ |..-.+. +...++.|..+-++.
T Consensus 152 ----------~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~ 215 (232)
T 2rfa_A 152 ----------SLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQH 215 (232)
T ss_dssp ----------TTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHH
T ss_pred ----------CCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHH
Confidence 012234455567788887878888888777544 3333333 333345666665544
No 263
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=61.50 E-value=18 Score=29.81 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=61.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---hhHHHHHHHHHh
Q 036107 184 LMDTLVKRNSVAHAYKVFLKFKD-CISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG---VSYTCFIEHYCR 259 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~ 259 (441)
.+...++.|+.+....+++.-.. ...++..-++ .+...+..|+.+-+..++ +.|..++. ..++.+ ...+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L-~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTEIVEFLL----QLGVPVNDKDDAGWSPL-HIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHH-HHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHHHHHHHH----HhCCCCCCcCCCCCCHH-HHHHH
Confidence 36677788999999888876532 1122322233 344456677766554444 44554443 233444 44455
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 260 EKDFRKVDYTLKEMQEKGCKPSV---ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 316 (441)
.|+.+-+ +.+.+.|..++. ...+ .+...+..|+.+-+.. +.+.|..++
T Consensus 83 ~~~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~----Ll~~g~~~~ 133 (231)
T 3aji_A 83 AGXDEIV----KALLVKGAHVNAVNQNGCT-PLHYAASKNRHEIAVM----LLEGGANPD 133 (231)
T ss_dssp HTCHHHH----HHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHH----HHHTTCCTT
T ss_pred cCHHHHH----HHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHH----HHHcCCCCC
Confidence 6776544 444455554432 2222 3344455677665444 444555543
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=61.10 E-value=79 Score=27.13 Aligned_cols=53 Identities=9% Similarity=-0.075 Sum_probs=28.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
..+.|+++++++....-.+.. +-|...=..+++-+|-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344555566555555544432 22455555555666666666666655555544
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=58.95 E-value=28 Score=29.95 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=34.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 036107 341 SSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLM 394 (441)
Q Consensus 341 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~ 394 (441)
....+.|.+++|++....-++.. .-|...=..++..+|-.|++++|.+-++.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34556777888887777665542 334455566777888888888887655533
No 266
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=58.34 E-value=62 Score=25.01 Aligned_cols=62 Identities=6% Similarity=0.122 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCC
Q 036107 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRK--SDYAQKAMKEMFQHGF 243 (441)
Q Consensus 182 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~ 243 (441)
..++.-|...|+.++|.+.++++.....-...+...+..++-+.+. .+.+..++..+...|+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4455566666666666666666642111223333344444444221 3445555555555443
No 267
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=57.66 E-value=53 Score=25.05 Aligned_cols=64 Identities=11% Similarity=0.080 Sum_probs=42.2
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 036107 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385 (441)
Q Consensus 306 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 385 (441)
+.+.+.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|.-..|..+...|-+.
T Consensus 11 ~~l~~~g~r~T~q-----------------R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQ-----------------RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHH-----------------HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-----------------HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 3456677766653 34455555555555678888888877766677777777777777777655
Q ss_pred h
Q 036107 386 D 386 (441)
Q Consensus 386 ~ 386 (441)
.
T Consensus 74 ~ 74 (145)
T 2fe3_A 74 E 74 (145)
T ss_dssp E
T ss_pred E
Confidence 4
No 268
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=57.25 E-value=8 Score=32.19 Aligned_cols=211 Identities=10% Similarity=0.001 Sum_probs=97.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---hhHHHHHHHHHhc
Q 036107 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG---VSYTCFIEHYCRE 260 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~ 260 (441)
.+...+..|+.+.+..+++.=..-...+..-+ +.+...+..|+.+-+..++ +.|..++. ...+ .+...+..
T Consensus 14 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t-~L~~A~~~ 87 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQR-TPLMEAAENNHLEAVKYLI----KAGALVDPKDAEGST-CLHLAAKK 87 (237)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCC-CHHHHHHHTTCHHHHHHHH----TTTCCCCCCCTTSCC-HHHHHHHT
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCcCccCCCCC-CHHHHHHHhCCHHHHHHHH----hCCCCCCCCCCCCCc-HHHHHHHc
Confidence 35566677888766655543211011122122 2344456677776554444 45554433 2233 34445566
Q ss_pred CCHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchH
Q 036107 261 KDFRKVDYTLKEMQEKG-CKPS---VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIY 336 (441)
Q Consensus 261 g~~~~a~~l~~~m~~~g-~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~ 336 (441)
|+.+-+..++ +.| ..++ ....+. +...+..|+.+-+ +.+.+.|..++... ..-
T Consensus 88 ~~~~~~~~Ll----~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~~~~~~~--------------~~g 144 (237)
T 3b7b_A 88 GHYEVVQYLL----SNGQMDVNCQDDGGWTP-MIWATEYKHVDLV----KLLLSKGSDINIRD--------------NEE 144 (237)
T ss_dssp TCHHHHHHHH----TTTCCCTTCCCTTSCCH-HHHHHHTTCHHHH----HHHHHTTCCTTCCC--------------TTS
T ss_pred CCHHHHHHHH----hCCCCCcccCCCCCCCH-HHHHHHcCCHHHH----HHHHHCCCCCCccC--------------CCC
Confidence 7765544444 343 2221 222222 3344456766544 44445555543221 001
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHH--HHHHH
Q 036107 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCET--HARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQES--THKML 412 (441)
Q Consensus 337 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~--~~~~l 412 (441)
.+.+...+..|+.+ +++.+.+.|..++... -.+.+...++.|..+-+ +-+.+.|..++.. .-.+-
T Consensus 145 ~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v-------~~Ll~~gad~~~~d~~g~t~ 213 (237)
T 3b7b_A 145 NICLHWAAFSGCVD----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV-------VLFLSRDSDVTLKNKEGETP 213 (237)
T ss_dssp CCHHHHHHHHCCHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHH-------HHHHTTTCCTTCCCTTSCCH
T ss_pred CCHHHHHHHCCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHH-------HHHHHcCCCCCccCCCCCCH
Confidence 12233334455543 4455556666554321 11234444556665543 3333456555432 11223
Q ss_pred HHHHHhcCCccHHHHHHHHHHH
Q 036107 413 AEELEKKSLGNAKERIDELLTH 434 (441)
Q Consensus 413 l~~~~~~g~~~~a~~~~~~m~~ 434 (441)
+......|+.+.+.++.+.+..
T Consensus 214 l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 214 LQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3344566766677777666654
No 269
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=55.47 E-value=67 Score=24.54 Aligned_cols=74 Identities=8% Similarity=-0.017 Sum_probs=49.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 036107 363 SCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVPQESTHKMLAEELEKKSLGNAKERIDELLTHAT 436 (441)
Q Consensus 363 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 436 (441)
+-.|+..|--....++.+....+...+-+.++++....+-.-...-.-.|.-++.+.|++++|.+..+.+.+..
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 33677777667777888887777666656677776654322233344455567888889998888888776543
No 270
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=53.51 E-value=99 Score=25.90 Aligned_cols=88 Identities=14% Similarity=0.051 Sum_probs=54.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh---CCCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107 184 LMDTLVKRNSVAHAYKVFLKFKD---CISL----SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 256 (441)
-++.+....++++|.++.++.++ +.++ ........|..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 46678889999999999988743 2332 112223334433444444455566666643 3456666677788
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 036107 257 YCREKDFRKVDYTLKEMQ 274 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~ 274 (441)
+.+.|+.++|.++|=+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 888888888888886654
No 271
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=53.00 E-value=69 Score=23.89 Aligned_cols=61 Identities=7% Similarity=0.136 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCC
Q 036107 182 SVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRK--SDYAQKAMKEMFQHG 242 (441)
Q Consensus 182 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g 242 (441)
..++.-|...|+.++|.+.++++.....-...+...+..++-+.+. .+.+.+++..+...|
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~ 73 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 73 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 3455555555666666666655532111122233333344443321 244555555555443
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=52.94 E-value=59 Score=23.12 Aligned_cols=80 Identities=9% Similarity=-0.104 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 036107 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271 (441)
Q Consensus 192 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~ 271 (441)
...++|..+-+.+...-. ...+--+-+..+...|++++|..+.+.+. -||...|-++-. .+.|-.+++..-+.
T Consensus 20 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 456677777766643211 22222222345566777777777766654 477777766543 46676777777666
Q ss_pred HHHHcCC
Q 036107 272 EMQEKGC 278 (441)
Q Consensus 272 ~m~~~g~ 278 (441)
++...|-
T Consensus 93 ~la~sg~ 99 (115)
T 2uwj_G 93 GLGGSSD 99 (115)
T ss_dssp HHHTCSS
T ss_pred HHHhCCC
Confidence 6666543
No 273
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=52.88 E-value=53 Score=25.22 Aligned_cols=51 Identities=8% Similarity=0.047 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 036107 336 YNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386 (441)
Q Consensus 336 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 386 (441)
=..++..+...+..-.|.++++.+.+.+...+..|.-..|..+...|-+.+
T Consensus 29 R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 29 REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 344555555555666788888888777767777777777788877777654
No 274
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=52.79 E-value=52 Score=24.71 Aligned_cols=63 Identities=8% Similarity=-0.044 Sum_probs=44.2
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 036107 307 KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRS-EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385 (441)
Q Consensus 307 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 385 (441)
.+.+.|++++.. =..++..+...+ ..-.|.++++.+.+.+...+..|.-.-|..+...|-+.
T Consensus 8 ~l~~~g~r~T~q-----------------R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLP-----------------RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHH-----------------HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHH-----------------HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 356677777653 344555555555 56678888888888777778888778888888887765
Q ss_pred h
Q 036107 386 D 386 (441)
Q Consensus 386 ~ 386 (441)
+
T Consensus 71 ~ 71 (136)
T 1mzb_A 71 R 71 (136)
T ss_dssp E
T ss_pred E
Confidence 4
No 275
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=52.14 E-value=27 Score=27.85 Aligned_cols=82 Identities=7% Similarity=-0.007 Sum_probs=40.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhh-hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh---hHHHHHHHHHhc
Q 036107 185 MDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV---SYTCFIEHYCRE 260 (441)
Q Consensus 185 i~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~ 260 (441)
+...+..|+.+....++..-. .-...+..-++ .+...++.|+.+-+..++ +.|..++.. ..+. +...+..
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~-l~~A~~~ 82 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNT-PLNIAVHNNDIEIAKALI----DRGADINLQNSISDSP-YLYAGAQ 82 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCH-HHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH----HcCCCCCCCCCCCCCH-HHHHHHc
Confidence 344566788887777775442 11112222222 344445667765444444 445555432 2333 3344556
Q ss_pred CCHHHHHHHHHH
Q 036107 261 KDFRKVDYTLKE 272 (441)
Q Consensus 261 g~~~~a~~l~~~ 272 (441)
|+.+-+..+++.
T Consensus 83 ~~~~~~~~Ll~~ 94 (201)
T 3hra_A 83 GRTEILAYMLKH 94 (201)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 776665555543
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=51.87 E-value=62 Score=23.06 Aligned_cols=80 Identities=9% Similarity=-0.050 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 036107 192 NSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLK 271 (441)
Q Consensus 192 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~ 271 (441)
...++|..+-+.+...-. ...+--+-+..+...|++++|..+.+.+. -||...|-++-. .+.|-.+++..-+.
T Consensus 21 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 456677767666643211 22222222345566777777777776664 477777666543 45666666666666
Q ss_pred HHHHcCC
Q 036107 272 EMQEKGC 278 (441)
Q Consensus 272 ~m~~~g~ 278 (441)
++...|-
T Consensus 94 ~la~sg~ 100 (116)
T 2p58_C 94 RLARSQD 100 (116)
T ss_dssp HHTTCCC
T ss_pred HHHhCCC
Confidence 6655543
No 277
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=50.51 E-value=65 Score=22.91 Aligned_cols=79 Identities=6% Similarity=-0.094 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036107 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305 (441)
Q Consensus 226 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 305 (441)
...++|..+-+-+...|- ...+--+-+..+.+.|++++|..+.+.+- .||...|.+|-. .+.|.-+++..-+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 357788887777776543 22222233456778999999998876653 789999888754 6788888888888
Q ss_pred HHHhhCC
Q 036107 306 EKMKSDD 312 (441)
Q Consensus 306 ~~m~~~g 312 (441)
.++..+|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 8888877
No 278
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=49.03 E-value=69 Score=22.81 Aligned_cols=79 Identities=5% Similarity=-0.032 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036107 226 RKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVY 305 (441)
Q Consensus 226 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 305 (441)
...++|..+-+-+...|- ...+--+-+..+.+.|++++|..+.+.+- .||...|.+|-. .+.|.-+++..-+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 357788888777776543 22222233456778999999998887654 789999988764 5788888888888
Q ss_pred HHHhhCC
Q 036107 306 EKMKSDD 312 (441)
Q Consensus 306 ~~m~~~g 312 (441)
.++..+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 8888877
No 279
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=48.56 E-value=57 Score=21.71 Aligned_cols=33 Identities=15% Similarity=0.003 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107 351 NALKLRQKIEEDSCKPDCETHARSLKMCCHKKR 383 (441)
Q Consensus 351 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 383 (441)
.+.++.+.+.+.+...+..|....+..+.+.|-
T Consensus 35 s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 35 SAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444444444333344444444444444443
No 280
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=47.91 E-value=63 Score=24.78 Aligned_cols=64 Identities=11% Similarity=-0.016 Sum_probs=44.1
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 036107 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRS-EEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384 (441)
Q Consensus 306 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 384 (441)
+.|.+.|++++.. =..++..+...+ ..-.|.++++.+.+.+...+..|.-..|..+...|-+
T Consensus 6 ~~l~~~g~r~T~q-----------------R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLP-----------------RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHH-----------------HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-----------------HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3456677777653 344455555554 5567888888888877777788877788888888876
Q ss_pred hh
Q 036107 385 KD 386 (441)
Q Consensus 385 ~~ 386 (441)
..
T Consensus 69 ~~ 70 (150)
T 2w57_A 69 TR 70 (150)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 281
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=47.56 E-value=56 Score=24.91 Aligned_cols=63 Identities=5% Similarity=0.046 Sum_probs=41.3
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 036107 306 EKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMK 385 (441)
Q Consensus 306 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 385 (441)
+.+.+.|++++.. =..++..+...+ .-.|.++++.+.+.+...+..|.-.-|..+...|-+.
T Consensus 8 ~~L~~~g~r~T~q-----------------R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-----------------RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHTTTCCCCHH-----------------HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHH-----------------HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 3455667776553 334444454555 5578888888877776777777777777777777654
Q ss_pred h
Q 036107 386 D 386 (441)
Q Consensus 386 ~ 386 (441)
+
T Consensus 70 ~ 70 (145)
T 3eyy_A 70 H 70 (145)
T ss_dssp E
T ss_pred E
Confidence 4
No 282
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=45.75 E-value=0.47 Score=44.71 Aligned_cols=97 Identities=10% Similarity=0.041 Sum_probs=70.3
Q ss_pred HHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCCC
Q 036107 325 FILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLSKGIVP 404 (441)
Q Consensus 325 ~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~~~~p 404 (441)
+.|.|+++...|..+|....+.|++++-++.+...++..-.|... +.|+-+|++.+++.+.++++ -.|
T Consensus 75 dsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayAk~~rL~elEefl----------~~~ 142 (624)
T 3lvg_A 75 DSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALAKTNRLAELEEFI----------NGP 142 (624)
T ss_dssp TSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHHTSCSSSTTTSTT----------SCC
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHHhhCcHHHHHHHH----------cCC
Confidence 344455555668999999999999999999888776654455444 57899999999988854421 246
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 036107 405 QESTHKMLAEELEKKSLGNAKERIDELLT 433 (441)
Q Consensus 405 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 433 (441)
|......+-+-|...|.++.|.-+|..+.
T Consensus 143 N~A~iq~VGDrcf~e~lYeAAKilys~is 171 (624)
T 3lvg_A 143 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS 171 (624)
T ss_dssp SSSCTHHHHHHHHHSCCSTTSSTTGGGSC
T ss_pred CcccHHHHHHHHHHccCHHHHHHHHHhCc
Confidence 66666777788888888888876665443
No 283
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=45.54 E-value=65 Score=21.44 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=26.6
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 036107 273 MQEKGCKPSVITCTIVMHALEKAK-QIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330 (441)
Q Consensus 273 m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (441)
|.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|..-.+..+.+.
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 445555555433 23344444433 3445556666665554444444443333333333
No 284
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=45.15 E-value=26 Score=28.76 Aligned_cols=88 Identities=13% Similarity=0.041 Sum_probs=47.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHh
Q 036107 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV---ITCTIVMHALEK 294 (441)
Q Consensus 218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~---~~~~~ll~~~~~ 294 (441)
.+...++.|+++....+++.-...--.+|..-++.|. ..+..|+.+-+..+ .+.|..++. ..++.+ ...+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L-~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALH-WACSAGHTEIVEFL----LQLGVPVNDKDDAGWSPL-HIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHH-HHHHHTCHHHHHHH----HHTTCCSCCCCTTSCCHH-HHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHH-HHHHcCcHHHHHHH----HHhCCCCCCcCCCCCCHH-HHHHH
Confidence 4666788899999988887643321123443444444 44566776554444 445554432 223333 33445
Q ss_pred cCCHHHHHHHHHHHhhCCCCC
Q 036107 295 AKQIYEALKVYEKMKSDDCLT 315 (441)
Q Consensus 295 ~~~~~~a~~~~~~m~~~g~~~ 315 (441)
.|+.+-+ +.+.+.|..+
T Consensus 83 ~~~~~~v----~~Ll~~g~~~ 99 (231)
T 3aji_A 83 AGXDEIV----KALLVKGAHV 99 (231)
T ss_dssp HTCHHHH----HHHHHTTCCT
T ss_pred cCHHHHH----HHHHHcCCCC
Confidence 6776544 4444555544
No 285
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=44.45 E-value=31 Score=26.42 Aligned_cols=121 Identities=9% Similarity=0.021 Sum_probs=58.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhH--HHHHHHHHh
Q 036107 183 VLMDTLVKRNSVAHAYKVFLKFKDCI-SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY--TCFIEHYCR 259 (441)
Q Consensus 183 ~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~ 259 (441)
..+...++.|+.+....+++.-.... ..+..-+ +.+...+..|+.+-+..+ .+.|..++.... .+.+...+.
T Consensus 10 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 10 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSVVEYL----LQHGADVHAKDKGGLVPLHNACS 84 (165)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCC-CHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHcCCCCccccccCCC-CHHHHHHHcChHHHHHHH----HhcCCCCCccCCCCCCHHHHHHH
Confidence 34455667788888777765432111 1111112 344455667776544444 445555543321 133444556
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 260 EKDFRKVDYTLKEMQEKGCKPSVITC--TIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 316 (441)
.|+.+-+. .+.+.|..++.... .+.+...+..|+.+-+.. +.+.|..++
T Consensus 85 ~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~ga~~~ 135 (165)
T 3twr_A 85 YGHYEVAE----LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL----LLQHGADPT 135 (165)
T ss_dssp TTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH----HHHTTCCTT
T ss_pred cCcHHHHH----HHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHH----HHHcCCCCc
Confidence 67766444 44445554442211 123344456677664444 444555443
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=43.94 E-value=29 Score=28.43 Aligned_cols=85 Identities=8% Similarity=0.104 Sum_probs=43.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHH
Q 036107 219 IHGWCKTRKSDYAQKAMKEMFQHGFSPDGV--SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV----ITCTIVMHAL 292 (441)
Q Consensus 219 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~~~~~ll~~~ 292 (441)
+...++.|+++.+..+++ .|..++.. .-.+.+...++.|+.+-+..+++ .|..++. ... +.+...
T Consensus 13 l~~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~-t~L~~A 83 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS----KGAIVDQLGGDLNS-TPLHWA 83 (240)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCBTTTTB-CHHHHH
T ss_pred HHHHHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH----cCCcchhhcCCcCC-ChhHHH
Confidence 334567788766665554 44444332 12235566677788765555544 4433221 122 234444
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 293 EKAKQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 293 ~~~~~~~~a~~~~~~m~~~g~~~~ 316 (441)
+..|+.+-+.. +.+.|..++
T Consensus 84 ~~~~~~~~v~~----Ll~~g~~~~ 103 (240)
T 3eu9_A 84 TRQGHLSMVVQ----LMKYGADPS 103 (240)
T ss_dssp HHHTCHHHHHH----HHHTTCCTT
T ss_pred HHcCCHHHHHH----HHHcCCCCc
Confidence 55677665444 444555443
No 287
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=43.78 E-value=38 Score=25.91 Aligned_cols=90 Identities=10% Similarity=0.010 Sum_probs=41.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhc
Q 036107 218 LIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITC--TIVMHALEKA 295 (441)
Q Consensus 218 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~--~~ll~~~~~~ 295 (441)
.+...++.|+.+.+..+++.-...-...+..-++ .+...+..|+.+-+ +.+.+.|..++.... .+.+...+..
T Consensus 11 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 11 QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST-PLHFAAGYNRVSVV----EYLLQHGADVHAKDKGGLVPLHNACSY 85 (165)
T ss_dssp HHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCC-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHcCCCCccccccCCCC-HHHHHHHcChHHHH----HHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence 4445567788877776664321110111222223 34445566765544 444445554432211 1233334455
Q ss_pred CCHHHHHHHHHHHhhCCCCCC
Q 036107 296 KQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 296 ~~~~~a~~~~~~m~~~g~~~~ 316 (441)
|+.+-+ +.+.+.|..++
T Consensus 86 ~~~~~v----~~Ll~~g~~~~ 102 (165)
T 3twr_A 86 GHYEVA----ELLVKHGAVVN 102 (165)
T ss_dssp TCHHHH----HHHHHTTCCTT
T ss_pred CcHHHH----HHHHhCCCCCC
Confidence 666544 33444555443
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.71 E-value=1.1e+02 Score=23.48 Aligned_cols=65 Identities=14% Similarity=0.241 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCCC
Q 036107 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ--IYEALKVYEKMKSDDCLT 315 (441)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~g~~~ 315 (441)
.+.+|.-|...|+.++|.+.++++..-... ...+..++..++-+.++ .+.+..++..+.+.|+.+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 445666666667777777666666421111 12333444444444322 344556666666555544
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.41 E-value=1.6e+02 Score=24.68 Aligned_cols=89 Identities=8% Similarity=0.007 Sum_probs=58.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC--CCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036107 218 LIHGWCKTRKSDYAQKAMKEMFQH--GFSP----DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHA 291 (441)
Q Consensus 218 li~~~~~~~~~~~a~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 291 (441)
-++.+.-..++++|..++++..+. ++++ +...-...+..-.....-.-+..+.+++.. .++...-...+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 466778889999999999877642 2332 112233344444444444556666666633 4566667777889
Q ss_pred HHhcCCHHHHHHHHHHHh
Q 036107 292 LEKAKQIYEALKVYEKMK 309 (441)
Q Consensus 292 ~~~~~~~~~a~~~~~~m~ 309 (441)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 999999999999887653
No 290
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=41.31 E-value=64 Score=28.32 Aligned_cols=17 Identities=6% Similarity=0.003 Sum_probs=8.8
Q ss_pred HHHhcCCHHHHHHHHHH
Q 036107 187 TLVKRNSVAHAYKVFLK 203 (441)
Q Consensus 187 ~~~~~g~~~~a~~~~~~ 203 (441)
..++.|+.+-+..++++
T Consensus 174 ~A~~~g~~~~v~~LL~~ 190 (337)
T 4g8k_A 174 DAAEKGHVEVLKILLDE 190 (337)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhc
Confidence 34455666555555443
No 291
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=40.93 E-value=90 Score=24.30 Aligned_cols=72 Identities=8% Similarity=0.050 Sum_probs=48.6
Q ss_pred HHHHHHHH-HHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHH
Q 036107 299 YEALKVYE-KMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEED--SCKPDCETHARSL 375 (441)
Q Consensus 299 ~~a~~~~~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li 375 (441)
+.+.+-+. .+.+.|++++.. =..++..+...+..-.|.++++.+.+. +...+..|.-.-|
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-----------------R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL 76 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-----------------REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTL 76 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-----------------HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHH-----------------HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH
Confidence 33343333 345577777653 445566666666677888888888877 6677777777778
Q ss_pred HHHHhcCChhhH
Q 036107 376 KMCCHKKRMKDG 387 (441)
Q Consensus 376 ~~~~~~g~~~~a 387 (441)
..+...|-+.+.
T Consensus 77 ~~L~e~Glv~~i 88 (162)
T 4ets_A 77 NLLEEAEMVTSI 88 (162)
T ss_dssp HHHHHTTSEEEC
T ss_pred HHHHHCCCEEEE
Confidence 888888876653
No 292
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=40.86 E-value=1.3e+02 Score=23.62 Aligned_cols=123 Identities=7% Similarity=-0.049 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--CCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCC
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKD--CISLSS-------QIFDVLIHGWCKTRKSDYAQKAMKEMFQH--GFSP 245 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p 245 (441)
..+++-.-+..+...|.++.|+-+.+.+.. +..|+. .++..+-+++...|.+..|...|++..+. .+..
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 344555556666777777777766665421 112221 13334455666677777777777664321 1111
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 036107 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDD 312 (441)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 312 (441)
+..+++.+- ... .... .....++...---+-.+|.+.+++++|..+++.+..+.
T Consensus 99 ~~s~~~~~~---~~s-s~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 99 TSKVRPSTG---NSA-STPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp -------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred CCCcccccc---ccC-CCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 111111110 000 0000 00112233333347788999999999999988775543
No 293
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=40.56 E-value=1.5e+02 Score=24.35 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=15.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC
Q 036107 289 MHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 289 l~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
+..|.+.|.+++|.+++++....
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHhcchHHHHHHHHHHhcC
Confidence 34567777777777777776654
No 294
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=40.10 E-value=1.9e+02 Score=25.37 Aligned_cols=147 Identities=7% Similarity=-0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh-----h
Q 036107 131 ETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-----K 205 (441)
Q Consensus 131 ~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~ 205 (441)
..|.++..=|.+.+++++|++++..--. .+.+.|+...|-++-..+ +
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~----------------------------~ll~~~Q~~sa~DLa~llvev~~~ 85 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGAL----------------------------SFLKAKQGGSGTDLIFYLLEVYDL 85 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH----------------------------HHHHCCCcchHHHHHHHHHHHHHH
Q ss_pred hCCCCcHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 036107 206 DCISLSSQIFDVLIHGWCKTR-----KSDYAQKAMKEMFQHGFS--PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGC 278 (441)
Q Consensus 206 ~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 278 (441)
.+.+++......++..+.... +.+-..+....-.+.|-. -|+.....+-..|.+.|++.+|...|-.-...
T Consensus 86 ~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~-- 163 (312)
T 2wpv_A 86 AEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHD-- 163 (312)
T ss_dssp TTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH--
T ss_pred cCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc--
Q ss_pred CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHh
Q 036107 279 KPSVITCTIVMHALEKA---KQIYEALKVYEKMK 309 (441)
Q Consensus 279 ~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~m~ 309 (441)
|...+..++--+... |...++--+..+.+
T Consensus 164 --s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaV 195 (312)
T 2wpv_A 164 --SMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLV 195 (312)
T ss_dssp --HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
No 295
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.65 E-value=16 Score=30.84 Aligned_cols=117 Identities=12% Similarity=0.011 Sum_probs=59.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHh-hhCCCCcH-------HHHHHHHHHHH--hcCCHHHHHHHHHHHhhCC---------CC
Q 036107 184 LMDTLVKRNSVAHAYKVFLKF-KDCISLSS-------QIFDVLIHGWC--KTRKSDYAQKAMKEMFQHG---------FS 244 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~~~~-~~~~~~~~-------~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g---------~~ 244 (441)
.+...++.|+.+....+++.+ ..+..++. .-.+.|..+.. +.|+.+-+..+++.-...+ +.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 345566778888877777755 22333332 23344544432 5688877777776643311 11
Q ss_pred -CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH----------------HHHHHHHHHhcCCHHHHHHHH
Q 036107 245 -PDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT----------------CTIVMHALEKAKQIYEALKVY 305 (441)
Q Consensus 245 -p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~----------------~~~ll~~~~~~~~~~~a~~~~ 305 (441)
.|..-++.| ...+..|+.+-+..++ +.|..++... -.+.+...+..|+.+-+..++
T Consensus 88 ~~d~~g~t~L-~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 88 DVYYRGQTAL-HIAIERRCKHYVELLV----EKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp CSSEESBCHH-HHHHHTTCHHHHHHHH----HTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred ccccCCCCHH-HHHHHcCCHHHHHHHH----hCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 111233344 4445567766554444 4565555432 223344455667765444433
No 296
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=38.28 E-value=1.3e+02 Score=26.82 Aligned_cols=24 Identities=8% Similarity=-0.050 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 036107 283 ITCTIVMHALEKAKQIYEALKVYE 306 (441)
Q Consensus 283 ~~~~~ll~~~~~~~~~~~a~~~~~ 306 (441)
.....++..+.+....+.+.++|.
T Consensus 142 ~fl~~vl~~l~~~~g~~~l~~~~~ 165 (339)
T 1ug3_A 142 SLLLEILGLLCKSMGPKKVGTLWR 165 (339)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHH
Confidence 334445555555555555555555
No 297
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=37.88 E-value=1.6e+02 Score=23.90 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 036107 260 EKDFRKVDYTLKEMQEKGCKPS-VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 315 (441)
.+...++..+|..|...|+--. +.-|..-...+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4446788888888877765433 5566677777778888888888888888888777
No 298
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=37.76 E-value=1.3e+02 Score=22.65 Aligned_cols=67 Identities=9% Similarity=-0.097 Sum_probs=38.0
Q ss_pred CCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 245 PDGVSYTCFIEHYCREKD---FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 245 p~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
|+..|--..-.+++++.+ ..+++.+++++.+.+..-....+--|--++.+.|+++.|.+..+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 444443333444444443 4456777777665542112344445556677777777777777777664
No 299
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=37.42 E-value=92 Score=24.05 Aligned_cols=51 Identities=16% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036107 301 ALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKP 366 (441)
Q Consensus 301 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 366 (441)
+.++|..|...|+-.....+ |-..-..+-..|++.+|.++|+.=++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~Alf---------------Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPL---------------YIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHH---------------HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
No 300
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=37.20 E-value=65 Score=25.30 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 036107 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCE 369 (441)
Q Consensus 299 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 369 (441)
+...++|..|...|+-.....+ |-..-..+-..|++.+|.++|+.=++.+.+|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~Alf---------------Y~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQF---------------YISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHH---------------HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 4477899999998886655543 7777777888999999999999988888888553
No 301
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=36.60 E-value=1.5e+02 Score=23.21 Aligned_cols=98 Identities=9% Similarity=0.007 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCH-------HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC-------
Q 036107 336 YNTMISSACVRSEEGNALKLRQKIEED-SCKPDC-------ETHARSLKMCCHKKRMKDGMLVLNLMREMLSK------- 400 (441)
Q Consensus 336 ~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-------~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~~------- 400 (441)
+-.-+..+...|.++.|+-+...+... +-.|+. .++.-+-+++...|++.+|...++..-+..+.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444456666677777776666654421 123331 24455566777777777777755543222221
Q ss_pred --------------CCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 036107 401 --------------GIVPQESTHKMLAEELEKKSLGNAKERIDELLT 433 (441)
Q Consensus 401 --------------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 433 (441)
....+...--.+-.+|.+.|++++|..+++.+.
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 011122333346777889999999998887654
No 302
>3q5w_A Protein CUT8; proteasome, tether, chromosome, cell cycle, dimer, NOVE; 2.75A {Schizosaccharomyces pombe} PDB: 3q5x_A
Probab=35.68 E-value=2e+02 Score=24.16 Aligned_cols=148 Identities=12% Similarity=0.043 Sum_probs=70.0
Q ss_pred HHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhh
Q 036107 170 STVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVS 249 (441)
Q Consensus 170 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 249 (441)
..++...|......|+..++. ...+-+.++...+. +|+...+-.++..+.+ ++++.+.-.|-..|..+
T Consensus 56 ~RlLEtLdk~qL~sLL~~L~~-~HPel~qeI~~~~P---~Psl~~al~~L~~~~~--------~i~~a~PY~~~~~dDYa 123 (245)
T 3q5w_A 56 SRLLQYSDKQQLFTILLQCVE-KHPDLARDIRGILP---APSMDTCVETLRKLLI--------NLNDSFPYGGDKRGDYA 123 (245)
T ss_dssp HHHTTSSCHHHHHHHHHHHHH-HCTHHHHHHHTTSC---CCCHHHHHHHHHHHHH--------HHHHTSCSSSCTTSHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH-hCchHHHHHhhcCC---CCCHHHHHHHHHHHHH--------HHHHhCCCCCCCccchh
Confidence 334445577777777777774 45555555555544 4676665555554332 34444443333345556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 036107 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSK 329 (441)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 329 (441)
|+-+=... .+-++.+.+..-.-++|...-+...+.- .+.|..+..++..-.-..+..++....+.+++
T Consensus 124 Y~RVK~~L------~eFl~~L~Df~~~fLPP~e~q~~~SL~F------Ld~aT~iIh~LP~w~~~s~n~~k~~ayeqis~ 191 (245)
T 3q5w_A 124 FNRIREKY------MAVLHALNDMVPCYLPPYSTCFEKNITF------LDAATNVVHELPEFHNPNHNVYKSQAYYELTG 191 (245)
T ss_dssp HHHHHHHH------HHHHHHHHHHGGGGSTBTCCCHHHHHHH------HHHHHHHHHTSCCCSSSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHHHHHhhhccCCCccccHHHHHHH------HHHHHHHHHHCCCCCchhhHHHHHHHHHHHHH
Confidence 55432211 1112222222223344444333333322 24555555555554444444444444444443
Q ss_pred cCccchHHHHHHHHHhc
Q 036107 330 AVRFLIYNTMISSACVR 346 (441)
Q Consensus 330 ~g~~~~~~~li~~~~~~ 346 (441)
+ |..+|+-.++.
T Consensus 192 a-----W~~vi~ea~kr 203 (245)
T 3q5w_A 192 A-----WLVVLRQLEDR 203 (245)
T ss_dssp H-----HHHHHHTTSSS
T ss_pred H-----HHHHHHHHHhc
Confidence 3 55555555443
No 303
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=34.75 E-value=67 Score=24.92 Aligned_cols=117 Identities=11% Similarity=0.032 Sum_probs=58.4
Q ss_pred HHHHhcCCHHHHHHHHHHhhhC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh---hHHHHHHHHHhcC
Q 036107 186 DTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV---SYTCFIEHYCREK 261 (441)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g 261 (441)
...++.|+.+.+..+++.-... ...+..-++ .+...+..|+.+-+..+ .+.|..++.. -.+. +...+..|
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~-L~~A~~~~ 83 (179)
T 3f6q_A 10 FTQCREGNAVAVRLWLDNTENDLNQGDDHGFS-PLHWACREGRSAVVEML----IMRGARINVMNRGDDTP-LHLAASHG 83 (179)
T ss_dssp HHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCC-HHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTCCCH-HHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhcCcccccccCCCCCC-HHHHHHHcCcHHHHHHH----HHcCCCCCCcCCCCCCH-HHHHHHcC
Confidence 3456778998888887764221 122222223 34455667777544444 4456555532 2333 44455567
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 262 DFRKVDYTLKEMQEKGCKPSVIT--CTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 262 ~~~~a~~l~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 316 (441)
+.+-+. .+.+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++
T Consensus 84 ~~~~v~----~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v----~~Ll~~ga~~~ 132 (179)
T 3f6q_A 84 HRDIVQ----KLLQYKADINAVNEHGNVPLHYACFWGQDQVA----EDLVANGALVS 132 (179)
T ss_dssp CHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCSS
T ss_pred CHHHHH----HHHHcCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCcc
Confidence 765444 4445565443221 11233444556776544 34444555543
No 304
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.73 E-value=1.8e+02 Score=23.56 Aligned_cols=64 Identities=11% Similarity=0.095 Sum_probs=37.1
Q ss_pred HHHHHHh---cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCCH
Q 036107 218 LIHGWCK---TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD-----FRKVDYTLKEMQEKGCKPSV 282 (441)
Q Consensus 218 li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~a~~l~~~m~~~g~~p~~ 282 (441)
+|+++.| -.+.+.|+-++-+|.+.| .|....=-.++-+.-.-|. ...|...++....-|.+--.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~ 88 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEAR 88 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence 4555543 467888888888888888 5554444444444444443 33455555555566664333
No 305
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=34.61 E-value=2.3e+02 Score=25.47 Aligned_cols=94 Identities=13% Similarity=0.139 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036107 214 IFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD--FRKVDYTLKEMQEKGCKPSVITCTIVMHA 291 (441)
Q Consensus 214 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 291 (441)
..+.+|.-|...|+.++|.+.++++..-.+. ...+..++..+.-+.++ .+.+.+++..+.+.|+-+.......+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3677888899999999999999998752222 23445566666655443 46688888888888877666555555555
Q ss_pred HHhcCC----HHHHHHHHHHH
Q 036107 292 LEKAKQ----IYEALKVYEKM 308 (441)
Q Consensus 292 ~~~~~~----~~~a~~~~~~m 308 (441)
+....+ ...|..++.++
T Consensus 298 l~~ldDl~lDiP~A~~~la~~ 318 (358)
T 3eiq_C 298 YNEIPDINLDVPHSYSVLERF 318 (358)
T ss_dssp HHHHHHHHHHCTTHHHHHHHH
T ss_pred HHhccHhhcccccHHHHHHHH
Confidence 444433 23455444444
No 306
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=34.44 E-value=1.9e+02 Score=23.75 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhCCCCcHHHH--------HHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 194 VAHAYKVFLKFKDCISLSSQIF--------DVLIHGWCKTRKSDYAQKAMKEMFQ 240 (441)
Q Consensus 194 ~~~a~~~~~~~~~~~~~~~~~~--------~~li~~~~~~~~~~~a~~~~~~m~~ 240 (441)
++.|+.+++.++.....+.... -..+..|.+.|.+++|.++|++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 3667777777754332211111 1223445666666666666666654
No 307
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=34.02 E-value=83 Score=23.91 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036107 264 RKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296 (441)
Q Consensus 264 ~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 296 (441)
-.|.++++.+.+.+...+..|.---|+.+...|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 345555555555444444444444444444444
No 308
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.81 E-value=59 Score=23.91 Aligned_cols=41 Identities=5% Similarity=-0.046 Sum_probs=17.6
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036107 234 AMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQ 274 (441)
Q Consensus 234 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 274 (441)
+|+.+....+.|++..--.-|..+...++++.|.++...+.
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444333333333333444455555555554443
No 309
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.56 E-value=1.5e+02 Score=22.04 Aligned_cols=65 Identities=14% Similarity=0.241 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCCC
Q 036107 250 YTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ--IYEALKVYEKMKSDDCLT 315 (441)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~g~~~ 315 (441)
.+.+|.-|...|+.++|.+.++++..-... ...+..++..++-+.++ .+.+.+++..+.+.|+.+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 345566666666666666666666421111 12333344444444322 244555666665555444
No 310
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=33.40 E-value=1.5e+02 Score=22.28 Aligned_cols=118 Identities=8% Similarity=-0.028 Sum_probs=57.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhH--HHHHHHHHhcCC
Q 036107 185 MDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSY--TCFIEHYCREKD 262 (441)
Q Consensus 185 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~ 262 (441)
+...+..|+.+....+.+.-..-...+..-++ .+...+..|+.+-+..++ +.|..++.... .+.+...+..|+
T Consensus 7 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFT-PLMWAAAHGQIAVVEFLL----QNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCC-HHHHHHHCCCHHHHHHHH----HcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 45566788888887777653211122222223 344455667765554444 44555443211 133444556677
Q ss_pred HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 263 FRKVDYTLKEMQEKGCKPSV---ITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 263 ~~~a~~l~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 316 (441)
.+-+..+++ .|..++. ...+. +...+..|+.+-+..+ .+.|..++
T Consensus 82 ~~~v~~Ll~----~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~L----l~~g~~~~ 129 (167)
T 3v31_A 82 TDIVKMLLD----CGVDVNEYDWNGGTP-LLYAVHGNHVKCVKML----LESGADPT 129 (167)
T ss_dssp HHHHHHHHH----HTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHH----HHTTCCTT
T ss_pred HHHHHHHHH----CCCCCCcCCCCCCCH-HHHHHHcCCHHHHHHH----HHcCCCCC
Confidence 665544443 4444332 22223 3334455776544443 44555543
No 311
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=33.08 E-value=55 Score=26.03 Aligned_cols=161 Identities=8% Similarity=0.021 Sum_probs=85.4
Q ss_pred HHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHh-hhCCCCcH---HH
Q 036107 139 ALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKF-KDCISLSS---QI 214 (441)
Q Consensus 139 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~---~~ 214 (441)
..++.|+++....++.. +.... +...-.+.+...+..|+.+.-.++.+.+ ..|..++. .-
T Consensus 12 ~Aa~~g~~~~~~~l~~~----~~~~~------------~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g 75 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEK----GYEDK------------ESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEG 75 (186)
T ss_dssp HHHHHSCHHHHHHHHHH----SSSCH------------HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTC
T ss_pred HHHHcCCHHHHHHHHhc----Ccccc------------cccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCC
Confidence 34567888876666543 21111 1111234555666777776555555554 33433332 22
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCCHhh---HHHHHHHHHhcCCH-HHHHHHHHHHHH-cCCCCCHHHH--H
Q 036107 215 FDVLIHGWCK-TRKSDYAQKAMKEMFQHGFSPDGVS---YTCFIEHYCREKDF-RKVDYTLKEMQE-KGCKPSVITC--T 286 (441)
Q Consensus 215 ~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~-~~a~~l~~~m~~-~g~~p~~~~~--~ 286 (441)
++.|..++.. ..+.....++.+.+.+.|..++... .++.+...+..+.. .....+++.+.+ .|..++.... .
T Consensus 76 ~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~ 155 (186)
T 3t8k_A 76 TTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGL 155 (186)
T ss_dssp CCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSC
T ss_pred CcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCC
Confidence 3344433332 2345556778888888888776532 21334433444433 455667777777 7776653211 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 036107 287 IVMHALEKAKQIYEALKVYEKMKSDDCLT 315 (441)
Q Consensus 287 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 315 (441)
+-+....+.|+.+.+.-+.+.+++.+++.
T Consensus 156 TpL~~A~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 156 TALEFVKRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp CHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence 23444566677766666666665555543
No 312
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=32.69 E-value=1.6e+02 Score=22.37 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=29.8
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 036107 271 KEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKA 330 (441)
Q Consensus 271 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 330 (441)
+.+++.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|.---++.+...
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 74 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKE 74 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 34556666654332 344555555556666777777776655555554433333333333
No 313
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=32.63 E-value=28 Score=28.48 Aligned_cols=120 Identities=11% Similarity=0.055 Sum_probs=59.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CCHhhHHHHHHHHH
Q 036107 184 LMDTLVKRNSVAHAYKVFLKFKDCI-SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFS----PDGVSYTCFIEHYC 258 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~~~~~li~~~~ 258 (441)
.+...++.|+.+.+..+++.-.... ..+..-.+ .+...+..|+.+-+..+++.-.. .. ++...++.+.. .+
T Consensus 5 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~~~~g~t~L~~-A~ 80 (228)
T 2dzn_A 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRI-PLHWSVSFQAHEITSFLLSKMEN--VNLDDYPDDSGWTPFHI-AC 80 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTCTT--CCGGGCCCTTSCCHHHH-HH
T ss_pred HHHHHHHhCCHHHHHHHHhcCccccccCCCCCCC-HHHHHHHcCCHHHHHHHHhcccc--ccccccCCCCCCCHHHH-HH
Confidence 3556678899988888887653321 13333233 34445667777655544443211 22 22233444444 44
Q ss_pred hcCCHHHHHHHHHHHHHcC--CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 259 REKDFRKVDYTLKEMQEKG--CKPS---VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 259 ~~g~~~~a~~l~~~m~~~g--~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 316 (441)
..|+.+-+ +.+.+.| ..++ ....+. +...+..|+.+-+. .+.+.|..++
T Consensus 81 ~~~~~~~~----~~Ll~~g~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~----~Ll~~g~~~~ 134 (228)
T 2dzn_A 81 SVGNLEVV----KSLYDRPLKPDLNKITNQGVTC-LHLAVGKKWFEVSQ----FLIENGASVR 134 (228)
T ss_dssp HHCCHHHH----HHHHSSSSCCCTTCCCTTCCCH-HHHHHHTTCHHHHH----HHHHTTCCSC
T ss_pred HcCCHHHH----HHHHhCCCCcccccCCcCCCCH-HHHHHHcCCHhHHH----HHHHcCCCcc
Confidence 56666544 4444555 2221 122223 33444667766444 4444565554
No 314
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=32.55 E-value=1.1e+02 Score=22.91 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036107 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296 (441)
Q Consensus 262 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 296 (441)
..-.|.++++.+.+.+...+..|..--|+.+.+.|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555555444444444444444444444
No 315
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=32.14 E-value=57 Score=25.09 Aligned_cols=11 Identities=9% Similarity=-0.221 Sum_probs=4.8
Q ss_pred HhcCChhhHHH
Q 036107 379 CHKKRMKDGML 389 (441)
Q Consensus 379 ~~~g~~~~a~~ 389 (441)
+..|..+-+.-
T Consensus 143 ~~~~~~~~~~~ 153 (172)
T 3v30_A 143 VALGYRKVQQV 153 (172)
T ss_dssp HHHTCHHHHHH
T ss_pred HHhCcHHHHHH
Confidence 34445444433
No 316
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=31.82 E-value=2e+02 Score=23.22 Aligned_cols=61 Identities=15% Similarity=0.022 Sum_probs=34.6
Q ss_pred HHHHHHh---cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCC
Q 036107 218 LIHGWCK---TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD-----FRKVDYTLKEMQEKGC 278 (441)
Q Consensus 218 li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~a~~l~~~m~~~g~ 278 (441)
+|+++.| -.+.+.|+-++-+|.+.|-.|....=-.++-+.-.-|. ...|...++....-|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 4555544 46788888888888888766655444444444443332 3344444444444444
No 317
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=31.38 E-value=1.7e+02 Score=23.51 Aligned_cols=155 Identities=12% Similarity=-0.007 Sum_probs=82.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CCCc
Q 036107 137 VEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDC-----ISLS 211 (441)
Q Consensus 137 i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~ 211 (441)
+...++.|+.+.+..+++.- + ..+. ..|..-+ +.+...+..|+.+-+..+++.-..- ...+
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~---g-~~~~---------~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 72 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFE---G-CEVH---------QRGAMGE-TALHIAALYDNLEAAMVLMEAAPELVFEPMTSEL 72 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTT---C-SCTT---------CCCTTSC-CHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTT
T ss_pred HHHHHHcCCHHHHHHHHHhc---C-CCcc---------cCCCCCC-CHHHHHHHcCCHHHHHHHHHcCchhccccccccC
Confidence 44456677776666666541 1 1110 0122222 2355566778888877777653220 1112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh----------------hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036107 212 SQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV----------------SYTCFIEHYCREKDFRKVDYTLKEMQE 275 (441)
Q Consensus 212 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----------------~~~~li~~~~~~g~~~~a~~l~~~m~~ 275 (441)
..-.+ .+...+..|+.+-+..++ +.|..++.. -.+ .+...+..|+.+-+..+ .+
T Consensus 73 ~~g~t-~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~L----l~ 142 (232)
T 2rfa_A 73 YEGQT-ALHIAVINQNVNLVRALL----ARGASVSARATGSVFHYRPHNLIYYGEH-PLSFAACVGSEEIVRLL----IE 142 (232)
T ss_dssp TTTCC-HHHHHHHTTCHHHHHHHH----HTTCCTTCCCCSGGGSCCTTCSCCCCSS-HHHHHHHHTCHHHHHHH----HH
T ss_pred CCCcC-HHHHHHHcCCHHHHHHHH----hCCCCCCcccCCcceeecccccccCCCC-HHHHHHHcCCHHHHHHH----HH
Confidence 22233 344455667776555444 445555442 233 34445556776554444 44
Q ss_pred cCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 036107 276 KGCKPSVI--TCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315 (441)
Q Consensus 276 ~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 315 (441)
.|..++.. .-.+.+...+..|+.+-+..+++.+.+.|..+
T Consensus 143 ~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 143 HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp TTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred CCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 56554421 11234555667899998888888888877644
No 318
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=30.52 E-value=4.7e+02 Score=26.97 Aligned_cols=161 Identities=6% Similarity=-0.053 Sum_probs=82.4
Q ss_pred HHHHHHHHcCCCh---hHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 036107 134 NAMVEALGKSKKF---GLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISL 210 (441)
Q Consensus 134 ~~li~~~~~~~~~---~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 210 (441)
..++...|..|.. +.|.+.|++....+...+ ..+..-..+...-.+.|..++-..+++.++.. .
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~-----------i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~--~ 756 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNP-----------IHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQA--Q 756 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCC-----------SCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCc-----------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc--C
Confidence 4566777777764 467778877665321111 01112222333334557666666666666542 2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHH---cCCCCCHHHH
Q 036107 211 SSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHG-FSPDGVSYTCFIEHYCREKD-FRKVDYTLKEMQE---KGCKPSVITC 285 (441)
Q Consensus 211 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~---~g~~p~~~~~ 285 (441)
+..--..++.+++...+.+...++++...... +++. .. ..++.+...+.. .+.|.+.+.+=.+ .....+...+
T Consensus 757 ~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~-~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~ 834 (909)
T 4fke_A 757 LVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQ-DA-TSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSF 834 (909)
T ss_dssp SHHHHHHHHHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GH-HHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCH
T ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCchh-hH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHH
Confidence 33345678888888888888888888776543 3322 22 333444443322 3344444433211 1122233346
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 286 TIVMHALEKAKQIYEALKVYEKMK 309 (441)
Q Consensus 286 ~~ll~~~~~~~~~~~a~~~~~~m~ 309 (441)
..++.+....-.-++-.+-++...
T Consensus 835 ~~~i~~~~~~~~t~~~~~~~~~f~ 858 (909)
T 4fke_A 835 SNLIQGVTRRFSSEFELQQLEQFK 858 (909)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 667766665444343333344443
No 319
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.39 E-value=1.8e+02 Score=22.00 Aligned_cols=59 Identities=8% Similarity=0.083 Sum_probs=30.8
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 036107 272 EMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAV 331 (441)
Q Consensus 272 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 331 (441)
.+++.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|.---++.+...|
T Consensus 12 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 12 TLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3555666655433 2344444455556667777777766655555554333333333333
No 320
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=30.09 E-value=1.2e+02 Score=23.42 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=43.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCC
Q 036107 220 HGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVIT--CTIVMHALEKAKQ 297 (441)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~--~~~ll~~~~~~~~ 297 (441)
...++.|+.+.+..+++.-...--.+|..-++.| ...+..|+.+-+. .+.+.|..++... -.+.+...+..|+
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 84 (179)
T 3f6q_A 10 FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPL-HWACREGRSAVVE----MLIMRGARINVMNRGDDTPLHLAASHGH 84 (179)
T ss_dssp HHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHH-HHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhcCcccccccCCCCCCHH-HHHHHcCcHHHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 3456678888887777643221111233333444 4445667765444 4444565544221 1123344455677
Q ss_pred HHHHHHHHHHHhhCCCCCC
Q 036107 298 IYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 298 ~~~a~~~~~~m~~~g~~~~ 316 (441)
.+-+ +.+.+.|..++
T Consensus 85 ~~~v----~~Ll~~g~~~~ 99 (179)
T 3f6q_A 85 RDIV----QKLLQYKADIN 99 (179)
T ss_dssp HHHH----HHHHHTTCCTT
T ss_pred HHHH----HHHHHcCCCCC
Confidence 6544 44445565543
No 321
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=29.98 E-value=2.1e+02 Score=22.72 Aligned_cols=122 Identities=11% Similarity=-0.026 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 256 (441)
+..+-...+.++.+.|..+....+.+.+.+ ++..+-...+.++.+.++.+.. ..+.++.. .++..+-...+.+
T Consensus 63 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~a 135 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDERAVEPLIKALKD---EDGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFA 135 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHH
Confidence 556666666777777765444444444432 5666666677777777765433 33444443 2566666666777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 257 YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
..+.|+.+ +...+..+.+ .++..+-...+.++.+.+.. ++...+..+.+
T Consensus 136 L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~ 184 (211)
T 3ltm_A 136 LGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE-RVRAAMEKLAE 184 (211)
T ss_dssp HHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHHH
T ss_pred HHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-hHHHHHHHHHh
Confidence 77776643 3333444433 24666666677777777763 34444444443
No 322
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=29.31 E-value=91 Score=24.54 Aligned_cols=95 Identities=9% Similarity=-0.079 Sum_probs=39.0
Q ss_pred HHHHhcCCHHHHHHHHHHhhhC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 036107 186 DTLVKRNSVAHAYKVFLKFKDC-ISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFR 264 (441)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 264 (441)
...+..|+.+-+..+++.-... ...+..-. +.+...++.|+.+-+..+++.-...--.+|..-.+.+..++.......
T Consensus 77 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~ 155 (201)
T 3hra_A 77 LYAGAQGRTEILAYMLKHATPDLNKHNRYGG-NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQ 155 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSC-CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSH
T ss_pred HHHHHcCCHHHHHHHHhccCcccccccCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchh
Confidence 3444566666665555443110 11111111 123334455666555544443211000123333344444443332233
Q ss_pred HHHHHHHHHHHcCCCCC
Q 036107 265 KVDYTLKEMQEKGCKPS 281 (441)
Q Consensus 265 ~a~~l~~~m~~~g~~p~ 281 (441)
.-.++.+.+.+.|..++
T Consensus 156 ~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 156 LYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHHHTTCCTT
T ss_pred hHHHHHHHHHHCCCCCC
Confidence 33455555556665544
No 323
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.26 E-value=96 Score=23.00 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=37.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 036107 338 TMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386 (441)
Q Consensus 338 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 386 (441)
.++..+...+..-.|.++++.+.+.+...+..|.-..|..+...|-+.+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEE
Confidence 3455555566667888999999888777788888888888888887654
No 324
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.23 E-value=55 Score=28.07 Aligned_cols=168 Identities=8% Similarity=-0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036107 231 AQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 231 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 310 (441)
..++.+-+.+.++......-.+.+...+..|+.+-+..+++. |..++...-.+.+...+..|+.+ +.+.+.+
T Consensus 12 ~~~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~ 83 (285)
T 3kea_A 12 SKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTK----IVKILLF 83 (285)
T ss_dssp HHHHHHHHHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCH----HHHHHHH
T ss_pred HHHHHHHHHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHH----HHHHHHH
Q ss_pred CCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCChhhH
Q 036107 311 DDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETH---ARSLKMCCHKKRMKDG 387 (441)
Q Consensus 311 ~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~a 387 (441)
.|..++... ..-.+.+...+..|+.+-+.-+++. |..++.... .+.+...+..|.
T Consensus 84 ~ga~~~~~d--------------~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~---- 141 (285)
T 3kea_A 84 SGLDDSQFD--------------DKGNTALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLND---- 141 (285)
T ss_dssp TTCCTTCCC--------------TTSCCHHHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTC----
T ss_pred CCCCCCCcC--------------CCCCcHHHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCC----
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCccHHHHHHHH
Q 036107 388 MLVLNLMREMLSKGIVPQES-THKMLAEELEKKSLGNAKERIDEL 431 (441)
Q Consensus 388 ~~~~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~ 431 (441)
.+.++-+.+.|..+... .-.+.+...+..|..+-+..+++.
T Consensus 142 ---~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 142 ---VSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp ---HHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
No 325
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=29.11 E-value=2.1e+02 Score=22.47 Aligned_cols=184 Identities=11% Similarity=0.006 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 036107 166 LAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSP 245 (441)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 245 (441)
...+...+...|..+-...+.++.+.|..+....+.+.+.+ ++..+-...+.++.+.+..+....+.+.+.. +
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~---~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d----~ 88 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKD---EDAWVRRAAADALGQIGDERAVEPLIKALKD----E 88 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC----S
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcC----C
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 036107 246 DGVSYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIF 325 (441)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 325 (441)
+..+-...+.+..+.++.+....+.+.+.+ ++...-...+.++.+.+..+....+...+.+ ++..+-...+.
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d----~~~~vr~~A~~ 160 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLIKALKD----EDWFVRIAAAFALGEIGDERAVEPLIKALKD----EDGWVRQSAAD 160 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHTCGGGHHHHHHHTTC----SSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHcC----CCHHHHHHHHH
Q ss_pred HHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 036107 326 ILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRM 384 (441)
Q Consensus 326 ~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 384 (441)
++.+.|. .++...+..+... ++...-...+.++.+.+..
T Consensus 161 aL~~~~~-----------------~~~~~~L~~~l~d---~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 161 ALGEIGG-----------------ERVRAAMEKLAET---GTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HHHHHCS-----------------HHHHHHHHHHHHH---CCHHHHHHHHHHHHHCC--
T ss_pred HHHHhCc-----------------hhHHHHHHHHHhC---CCHHHHHHHHHHHHHHHhh
No 326
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.04 E-value=2e+02 Score=22.34 Aligned_cols=53 Identities=4% Similarity=-0.093 Sum_probs=42.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHhh
Q 036107 258 CREKDFRKVDYTLKEMQEKGCKP--SVITCTIVMH-A-----LEKAKQIYEALKVYEKMKS 310 (441)
Q Consensus 258 ~~~g~~~~a~~l~~~m~~~g~~p--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~m~~ 310 (441)
...|++-+|.+++++.....-.+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34599999999999998876666 5677888888 2 2457999999999998865
No 327
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.49 E-value=90 Score=23.51 Aligned_cols=50 Identities=12% Similarity=0.037 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 036107 337 NTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKD 386 (441)
Q Consensus 337 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 386 (441)
..++..+...++.-.|.++++.+.+.+...+..|.-..|..+...|-+.+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 34555565666667889999999888777888888888888888887654
No 328
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.28 E-value=92 Score=25.84 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036107 299 YEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPD 367 (441)
Q Consensus 299 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 367 (441)
+...++|..|...|+-.....| |-..-..+-..|++.+|.++|+.=++.+-+|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~Alf---------------Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIF---------------YEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHH---------------HHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5777899999998876655543 77888888889999999999999888888883
No 329
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.00 E-value=1.2e+02 Score=23.22 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107 262 DFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297 (441)
Q Consensus 262 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 297 (441)
..-.|.++++.+.+.+...+..|..--|+.+...|-
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 344455555555555444444444444444444443
No 330
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=26.98 E-value=2.6e+02 Score=22.88 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=42.9
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCCH
Q 036107 217 VLIHGWCK---TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKD-----FRKVDYTLKEMQEKGCKPSV 282 (441)
Q Consensus 217 ~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~a~~l~~~m~~~g~~p~~ 282 (441)
-+|+++.| -.+.+.|+-++-+|.+.|-.|.-..=-.++-+.-.-|. ...|...++....-|.+--.
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~ 110 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGL 110 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence 35666654 47899999999999998877666555555555544443 44566666666666764333
No 331
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=26.87 E-value=2e+02 Score=22.83 Aligned_cols=123 Identities=8% Similarity=-0.037 Sum_probs=54.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH
Q 036107 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDF 263 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 263 (441)
.+...++.|+.+-+..+++.-..-...+..-+ +.+...+..|+.+-+..+++.-...--.++....+.+. ..+..|+.
T Consensus 28 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~ 105 (223)
T 2f8y_A 28 ALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI-LAARLAVE 105 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHH-HHHHHTCH
T ss_pred hHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHH-HHHHhCcH
Confidence 45556677887766666654211111122222 23444566777765555554321110011222333333 33455665
Q ss_pred HHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 264 RKVDYTLKEMQEKGCKPSVIT--CTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 264 ~~a~~l~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 316 (441)
+-+.. +.+.|..++... -.+.+...+..|+.+-+.. +.+.|..++
T Consensus 106 ~~~~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~g~~~~ 152 (223)
T 2f8y_A 106 GMLED----LINSHADVNAVDDLGKSALHWAAAVNNVDAAVV----LLKNGANKD 152 (223)
T ss_dssp HHHHH----HHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH----HHHTTCCTT
T ss_pred HHHHH----HHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHH----HHHcCCCCC
Confidence 54443 334554443211 1223334455666554443 344454443
No 332
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=26.16 E-value=80 Score=23.63 Aligned_cols=112 Identities=10% Similarity=0.017 Sum_probs=59.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhh-hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---hhHHHHHHHHHh
Q 036107 184 LMDTLVKRNSVAHAYKVFLKFK-DCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDG---VSYTCFIEHYCR 259 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~ 259 (441)
.+...++.|+.+.+..+++... .-...+..-.+. +.. +..|+.+-+..++ +.|..++. ...+.+ ...+.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~-~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L-~~A~~ 77 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA-LQV-MMFGSTAIALELL----KQGASPNVQDTSGTSPV-HDAAR 77 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCH-HHH-SCTTCHHHHHHHH----HTTCCTTCCCTTSCCHH-HHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcH-HHH-HHcCCHHHHHHHH----HCCCCCCCcCCCCCCHH-HHHHH
Confidence 4556677899999988887721 111223222333 334 7778876555554 44554443 233344 44455
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036107 260 EKDFRKVDYTLKEMQEKGCKPS---VITCTIVMHALEKAKQIYEALKVYEK 307 (441)
Q Consensus 260 ~g~~~~a~~l~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~ 307 (441)
.|+.+-+..+ .+.|..++ ....+. +...++.|+.+-+.-+++.
T Consensus 78 ~~~~~~v~~L----l~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 78 TGFLDTLKVL----VEHGADVNVPDGTGALP-IHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp TTCHHHHHHH----HHTTCCSCCCCTTSCCH-HHHHHHHTCHHHHHHHHTT
T ss_pred cCcHHHHHHH----HHcCCCCCCcCCCCCcH-HHHHHHhChHHHHHHHHhc
Confidence 6776654444 44554443 222233 3344566777766655554
No 333
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=26.01 E-value=3e+02 Score=24.08 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 216 DVLIHGWCKTRKSDYAQKAMKEMF 239 (441)
Q Consensus 216 ~~li~~~~~~~~~~~a~~~~~~m~ 239 (441)
+.++.-|...|+.++|.+.++++.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC
Confidence 345555555555555555555554
No 334
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=25.98 E-value=3.6e+02 Score=24.19 Aligned_cols=62 Identities=8% Similarity=0.104 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc---HHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCC
Q 036107 180 AMSVLMDTLVKRNSVAHAYKVFLKFKDCISLS---SQIFDVLIHGWCKTRK--SDYAQKAMKEMFQHGFS 244 (441)
Q Consensus 180 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~ 244 (441)
....+|.=|...|+.++|.+.++++.. |+ ......+|......++ -+.+-+++..+...|+-
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~---p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~l 80 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA---PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIA 80 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC---CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC---chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCC
Confidence 456677777777777777777777753 32 1122223333333222 23455566666655443
No 335
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.10 E-value=2.4e+02 Score=24.84 Aligned_cols=100 Identities=13% Similarity=-0.003 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEH 256 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 256 (441)
|..-++ .+...+..|+.+.+..+++.=..-...+..-+ +.+...+..|+.+-+..+++. |..++...-.+.+..
T Consensus 17 d~~g~t-~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~ 90 (364)
T 3ljn_A 17 DDENME-KIHVAARKGQTDEVRRLIETGVSPTIQNRFGC-TALHLACKFGCVDTAKYLASV----GEVHSLWHGQKPIHL 90 (364)
T ss_dssp CHHHHH-HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCC-CHHHHHHHHCCHHHHHHHHHH----CCCCCCBTTBCHHHH
T ss_pred CCCCCC-HHHHHHHcCCHHHHHHHHHcCCCccccCCCCC-cHHHHHHHcCCHHHHHHHHHC----CCCccccCCCCHHHH
Confidence 444444 45556677998888777754211111122222 244555667887666555554 333444222334455
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH
Q 036107 257 YCREKDFRKVDYTLKEMQEKGCKPSV 282 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~g~~p~~ 282 (441)
.+..|+.+-+..+++.-.+.|..++.
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~~~~ 116 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQMPES 116 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHcCCHHHHHHHHHhccccCCCHHH
Confidence 66778888888888876655655443
No 336
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.92 E-value=5.8e+02 Score=26.43 Aligned_cols=48 Identities=6% Similarity=-0.096 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcC
Q 036107 249 SYTCFIEHYCREKDFRKVDYTLKEMQEKGCKPSV----ITCTIVMHALEKAK 296 (441)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~~~~~ll~~~~~~~ 296 (441)
=|..+++-+-+.+.++.+.++-+...+.--.-|. ..|+.++++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 4778888899999999998888877654222222 36777787777654
No 337
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.91 E-value=51 Score=20.74 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 036107 229 DYAQKAMKEMFQHGFSPDGVSYTCFIEHY 257 (441)
Q Consensus 229 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 257 (441)
++|.+.|.+|.+..-.++.-||...|...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34555555554332223344555555554
No 338
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.81 E-value=2.1e+02 Score=20.96 Aligned_cols=44 Identities=9% Similarity=-0.093 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 268 YTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 268 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
-+|+.+....+.|++..--.-|..+...++++.|.+++..+...
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 35666666677766665555666778889999999999988874
No 339
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=24.62 E-value=2.5e+02 Score=27.01 Aligned_cols=54 Identities=9% Similarity=0.156 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHH
Q 036107 177 DTRAMSVLMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYA 231 (441)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 231 (441)
+..-..-++..|.+.|-.+.|.+++..+.....-+...| .-+..|+|+|+++.+
T Consensus 515 Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 515 TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhhc
Confidence 334445555566666666666666665533333333334 334445555555443
No 340
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=24.52 E-value=2.3e+02 Score=21.52 Aligned_cols=67 Identities=9% Similarity=-0.097 Sum_probs=35.8
Q ss_pred CCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 036107 245 PDGVSYTCFIEHYCREKD---FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSD 311 (441)
Q Consensus 245 p~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 311 (441)
|+..+--..-.+++++.. ..++..+++++.+.+..-.-...--|--++.+.|++++|.++.+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 444443334444444443 3456666666655432212233334455667777777777777777664
No 341
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=24.51 E-value=2e+02 Score=20.79 Aligned_cols=67 Identities=16% Similarity=0.122 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHH
Q 036107 228 SDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKEMQE-KGCKPSVITCTIVMHALEKAKQIYE 300 (441)
Q Consensus 228 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~ 300 (441)
+++|+.-+++.... .+|......++..+-.. ++.+.++.+...+ .|+ .+.++..++....+.|-+++
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~ 71 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPE 71 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCc
Confidence 34444444444332 23444444444443333 3444444443322 244 23344444444444444433
No 342
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.95 E-value=1.4e+02 Score=23.13 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=19.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC
Q 036107 254 IEHYCREKDFRKVDYTLKEMQEK--GCKPSVITCTIVMHALEKAK 296 (441)
Q Consensus 254 i~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~~~~~ll~~~~~~~ 296 (441)
+..+...+..-.|.++++.+.+. +...+..|.-.-|+.+.+.|
T Consensus 39 L~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 39 LKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 33444444444455555555444 33344444444444444444
No 343
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation, ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP: a.205.1.1 PDB: 2k5b_B 2w0g_A
Probab=23.68 E-value=3.4e+02 Score=23.09 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 036107 130 PETYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVK---RNSVAHAYKVFL 202 (441)
Q Consensus 130 ~~~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~ 202 (441)
...|..++.-|+...+++...+.+.+-... . ...+-+.|+-.+.. .|+.+.+..+.+
T Consensus 39 v~k~e~~lk~Fa~i~~y~dS~~FL~~hp~L----v------------~E~tad~Lli~afdlemegk~~~m~qvaH 98 (265)
T 1us7_B 39 VEKYEKQIKHFGMLRRWDDSQKYLSDNVHL----V------------CEETANYLVIWCIDLEVEEKCALMEQVAH 98 (265)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHTTGGG----C------------SHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhCCee----c------------chhhhhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356889999999999999999988774332 1 44555555555544 477777765543
No 344
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=23.02 E-value=1.1e+02 Score=19.09 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 036107 261 KDFRKVDYTLKEMQEKGC 278 (441)
Q Consensus 261 g~~~~a~~l~~~m~~~g~ 278 (441)
|+.+.|...+-+|...+.
T Consensus 37 gdvd~aI~~LL~m~~~~~ 54 (59)
T 1wgl_A 37 GNKDAAINSLLQMGEEPS 54 (59)
T ss_dssp TCHHHHHHHHHHSSCCCC
T ss_pred CCHHHHHHHHHcCcCCCC
Confidence 344444444444443333
No 345
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=22.24 E-value=5.7e+02 Score=25.18 Aligned_cols=223 Identities=11% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh---c
Q 036107 184 LMDTLVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCR---E 260 (441)
Q Consensus 184 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---~ 260 (441)
...++.=.|++|.|.+++... ...+.+++...+..|.--+- =+.+......-...-+..||..|.+ .
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~---~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~F~~ 369 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF---SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKSFRY 369 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT---CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc---CchhHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHHhhc
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH---------------HHHHHH
Q 036107 261 KDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSF---------------YSSLIF 325 (441)
Q Consensus 261 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---------------~~~li~ 325 (441)
.+..+|.+.|-.+...+-+.....+...+.-+.-..+ +-..++..+...|....... ...++.
T Consensus 370 td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr--~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~ 447 (661)
T 2qx5_A 370 SDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETK--EFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITE 447 (661)
T ss_dssp TCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHC--CHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcc--cHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHH
Q ss_pred ----HHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChh-----------hHHH
Q 036107 326 ----ILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC-HKKRMK-----------DGML 389 (441)
Q Consensus 326 ----~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-~~g~~~-----------~a~~ 389 (441)
-+...|+ +.--|..|--.|+++.|++++.+.. ...+..-. ..+..+ .|.+
T Consensus 448 ~aA~~ae~~G~---~~dAi~LY~La~~~d~vl~lln~~L-----------s~~l~~~~~~~~~~~~~~~~~~~l~~la~~ 513 (661)
T 2qx5_A 448 QAARRADEDGR---IYDSILLYQLAEEYDIVITLVNSLL-----------SDTLSASDLDQPLVGPDDNSETNPVLLARR 513 (661)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHTTCHHHHHHHHHHHH-----------HHHHHHSCTTSCSSCSSCCTTTCHHHHHHH
T ss_pred HHHHHHHHCCC---HHHHHHHHHHhcCHHHHHHHHHHHH-----------HHHhcccccccccccccccccccHHHHHHH
Q ss_pred HHHHHHHH---HHCCCCCCHHHHHHHHHHH-----HhcCCccHHHHHHHHH
Q 036107 390 VLNLMREM---LSKGIVPQESTHKMLAEEL-----EKKSLGNAKERIDELL 432 (441)
Q Consensus 390 ~~~~~~~m---~~~~~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~m 432 (441)
+.+.+..- ..+--..+..|+..|++.. .+.|+++.|.+.++.+
T Consensus 514 i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 514 MASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 346
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.10 E-value=66 Score=26.86 Aligned_cols=25 Identities=4% Similarity=-0.093 Sum_probs=13.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC
Q 036107 257 YCREKDFRKVDYTLKEMQEKGCKPS 281 (441)
Q Consensus 257 ~~~~g~~~~a~~l~~~m~~~g~~p~ 281 (441)
.++.|+.+....+++.+.+.|..++
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3445556655555555555544443
No 347
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=21.93 E-value=1.1e+02 Score=24.25 Aligned_cols=178 Identities=10% Similarity=0.069 Sum_probs=87.9
Q ss_pred hHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 036107 249 SYTCFIEH-YCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFIL 327 (441)
Q Consensus 249 ~~~~li~~-~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 327 (441)
-|..++.. ..-.|++..++-++..... .+..-|..| +|-+..++..|...++.+.+..+.-|..+-..+=..+
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~lNT----~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ff 107 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKLNT----CTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMF 107 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTCCB----HHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTS
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhcch----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceee
Confidence 34444432 3345667666655543211 122223332 3566777777777777777554432211111111111
Q ss_pred HhcCcc-chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----------HhcCC--h-----hhHH
Q 036107 328 SKAVRF-LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMC-----------CHKKR--M-----KDGM 388 (441)
Q Consensus 328 ~~~g~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~-----------~~~g~--~-----~~a~ 388 (441)
..-++. ..|+.+...+-+.|+.++|+..+..--.. .|-..+...++-.- ...|+ . ....
T Consensus 108 vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~--~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~ 185 (242)
T 3kae_A 108 VDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK--SFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSI 185 (242)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHH
T ss_pred eccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC--ccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHH
Confidence 112222 45778888888999999999988653221 22222222111100 00000 1 0111
Q ss_pred HHHH-----HHHHHHHCCCCCCHHHHHHH--HHHHHhcCCccHHHHHHHHHHHHh
Q 036107 389 LVLN-----LMREMLSKGIVPQESTHKML--AEELEKKSLGNAKERIDELLTHAT 436 (441)
Q Consensus 389 ~~~~-----~~~~m~~~~~~p~~~~~~~l--l~~~~~~g~~~~a~~~~~~m~~~~ 436 (441)
.+.+ .+++- ....|..-+|-.- ...|...|..++...+|..+++.-
T Consensus 186 ~lHe~~s~~~ikkY--~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kD 238 (242)
T 3kae_A 186 EFHESLSPSLVKKY--MEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKD 238 (242)
T ss_dssp HHHHHCCHHHHHHH--HTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhccHHHHHHH--HHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcC
Confidence 1111 12221 2577877766443 344678999999999999988754
No 348
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.60 E-value=1.1e+02 Score=22.64 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=16.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036107 259 REKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAK 296 (441)
Q Consensus 259 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 296 (441)
..+..-.|.++++.+.+.+...+..|..-.|+.+...|
T Consensus 22 ~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 22 TLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33334444555555544444444444444444444433
No 349
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.18 E-value=3.5e+02 Score=22.33 Aligned_cols=52 Identities=13% Similarity=-0.003 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 036107 264 RKVDYTLKEMQEKGCKPS-VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315 (441)
Q Consensus 264 ~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 315 (441)
+....+|..|...|+--. +..|..--..+...|++.+|..+|..-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 355667777776655433 4556666666667777777777777777776666
No 350
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=21.17 E-value=3.3e+02 Score=22.06 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=48.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 036107 295 AKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDC 368 (441)
Q Consensus 295 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 368 (441)
++...++.++|..|...|+-.....+ |-..-..+-..|++.+|.++|+.=++.+.+|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~Alf---------------Ye~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLF---------------YEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHH---------------HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 44577999999999998876655533 788888888899999999999998888888843
No 351
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=21.11 E-value=4.7e+02 Score=23.77 Aligned_cols=173 Identities=9% Similarity=0.009 Sum_probs=100.8
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh---hCCCC
Q 036107 134 NAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK---DCISL 210 (441)
Q Consensus 134 ~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~ 210 (441)
..+...|...|++.+|.+++.++.+.-....+. ..-.+++..-+..|...+++.++...+...+ +.+.+
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~--------~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~ 174 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDK--------NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC 174 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc--------hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence 367889999999999999999988754222111 1135778888899999999999999997763 23334
Q ss_pred cHHHHHHHH----HHHH-hcCCHHHHHHHHHHHhh----CCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHH-HHHHcCC
Q 036107 211 SSQIFDVLI----HGWC-KTRKSDYAQKAMKEMFQ----HGFS--PDGVSYTCFIEHYCREKDFRKVDYTLK-EMQEKGC 278 (441)
Q Consensus 211 ~~~~~~~li----~~~~-~~~~~~~a~~~~~~m~~----~g~~--p~~~~~~~li~~~~~~g~~~~a~~l~~-~m~~~g~ 278 (441)
+..+-..+= ..+. ..+++..|...|-+..+ .|.. .+...|..+ .+... ++..+...++. .....-.
T Consensus 175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~-~~r~el~~~l~~~~~~~~~ 252 (394)
T 3txn_A 175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIML-GQSDDVNQLVSGKLAITYS 252 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHT-TCGGGHHHHHHSHHHHTTC
T ss_pred CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHc-CCHHHHHHHhccccccccC
Confidence 443332221 1234 78899999887766532 2211 112233222 22222 23223223222 1111113
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 036107 279 KPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTS 318 (441)
Q Consensus 279 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 318 (441)
.|....+..++.++ +.+++.+...++..... .+..|..
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 46666677777765 45788777777776543 2444554
No 352
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.96 E-value=2.8e+02 Score=21.58 Aligned_cols=24 Identities=4% Similarity=0.257 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 036107 216 DVLIHGWCKTRKSDYAQKAMKEMF 239 (441)
Q Consensus 216 ~~li~~~~~~~~~~~a~~~~~~m~ 239 (441)
..+|.-|...++.++|.+-++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555555666666666666654
No 353
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=20.90 E-value=3e+02 Score=21.45 Aligned_cols=52 Identities=8% Similarity=-0.032 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 265 KVDYTLKEMQEKGCKPS-VITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 265 ~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 316 (441)
....+|..|..+|+--. +..|..-...+-..|++.+|.++|..-++.+-.|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 36667888877765433 45566666667777888888888888888777773
No 354
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=20.88 E-value=3.4e+02 Score=22.01 Aligned_cols=128 Identities=11% Similarity=0.087 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHhh-h
Q 036107 129 TPETYNAMVEALGKSKKF-GLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVFLKFK-D 206 (441)
Q Consensus 129 ~~~~y~~li~~~~~~~~~-~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~ 206 (441)
+..-+..++..+...+.. ..+..+|+.+-..+.+.. +..-|..++..+.+....+....+|+.+. +
T Consensus 83 s~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~d~~G~I------------~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d 150 (229)
T 3dd4_A 83 NEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAV------------SFEDFIKGLSILLRGTVQEKLNWAFNLYDIN 150 (229)
T ss_dssp CHHHHHHHHHHHSCSSSHHHHHHHHHHTTCSSCCSSC------------CHHHHHHHHHHHHHSCHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHCCCCCcHHHHHHHHHHcCCCCCCeE------------eHHHHHHHHHHHcCCChHHHHHHHHHHhCCC
Confidence 555555555554333332 234456666554443443 34444444555554444556666676662 1
Q ss_pred -CCCCcHHHHHHHHHHHHh------------cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 036107 207 -CISLSSQIFDVLIHGWCK------------TRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTL 270 (441)
Q Consensus 207 -~~~~~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~ 270 (441)
.-..+..-+..++..... .-.-+.+.++|..+-..| -...+|.-++..+.+...+.++...|
T Consensus 151 ~dG~Is~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~EF~~~~~~~~~~~~~~~~~ 225 (229)
T 3dd4_A 151 KDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNK--DGVVTIDEFIESCQKDENIMRSMQLF 225 (229)
T ss_dssp CSSCCBHHHHHHHHHHHHHHCC-----------CCTHHHHHHHHHCSSC--SSBCCHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCeECHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHhcCCC--CCcEeHHHHHHHHHhCHHHHHHHHhc
Confidence 234455555555554421 112245556666654322 12345666666655544444444333
No 355
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=20.63 E-value=6e+02 Score=24.77 Aligned_cols=228 Identities=6% Similarity=-0.046 Sum_probs=115.4
Q ss_pred CHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036107 193 SVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCREKDFRKVDYTLKE 272 (441)
Q Consensus 193 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 272 (441)
..++...+.++.+. .+.....-+.-+..+.+.+++.....++.. .+.+...=-....+....|+..+|....+.
T Consensus 54 ~~~ev~~Fl~~~~~-~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~ 127 (618)
T 1qsa_A 54 PAVTVTNFVRANPT-LPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKE 127 (618)
T ss_dssp CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 44555555554432 122223334456667777887777665443 122343334456677778998888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHHHhhCC-----------CCCCHH-HHHHHHHHHHhcCcc-----
Q 036107 273 MQEKGCKPSVITCTIVMHALEKAKQIYE--ALKVYEKMKSDD-----------CLTDTS-FYSSLIFILSKAVRF----- 333 (441)
Q Consensus 273 m~~~g~~p~~~~~~~ll~~~~~~~~~~~--a~~~~~~m~~~g-----------~~~~~~-~~~~li~~~~~~g~~----- 333 (441)
+...|.. ....+..++..+.+.|.+.. ...=++.+...| +.++.. ....++..+.+-...
T Consensus 128 lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~ 206 (618)
T 1qsa_A 128 LWLTGKS-QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFAR 206 (618)
T ss_dssp HHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHhCCCC-CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHh
Confidence 8776643 45668889999997776543 222222222222 222221 122222222222111
Q ss_pred ---------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCChhhHHHHHHHHHHHHHC
Q 036107 334 ---------LIYNTMISSACVRSEEGNALKLRQKIEEDSCKPDCETHARSLKMCC----HKKRMKDGMLVLNLMREMLSK 400 (441)
Q Consensus 334 ---------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~----~~g~~~~a~~~~~~~~~m~~~ 400 (441)
..+...+.-+++. +.+.|..+|......+ ..+......+-...+ ..+...++.. .+.+...
T Consensus 207 ~~~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~---~~~~~~~- 280 (618)
T 1qsa_A 207 TTGATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAK---WRDDAIM- 280 (618)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHH---HHHHHHH-
T ss_pred ccCCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHH---HHHhccc-
Confidence 1111123333333 6788888888776433 223333322332222 2231223322 3333222
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 036107 401 GIVPQESTHKMLAEELEKKSLGNAKERIDELLTH 434 (441)
Q Consensus 401 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 434 (441)
..++.......+....+.|+++.|.+.++.|..
T Consensus 281 -~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~ 313 (618)
T 1qsa_A 281 -RSQSTSLIERRVRMALGTGDRRGLNTWLARLPM 313 (618)
T ss_dssp -TCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT
T ss_pred -cCCChHHHHHHHHHHHHCCCHHHHHHHHHHccc
Confidence 224444455555555677888888888877754
No 356
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.60 E-value=1e+02 Score=23.24 Aligned_cols=44 Identities=16% Similarity=0.186 Sum_probs=20.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036107 254 IEHYCREKDFRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQ 297 (441)
Q Consensus 254 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 297 (441)
+..+...++.-.|.++++.+.+.+...+..|.--.|+.+.+.|-
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 33333333444455555555554444444444444444444443
No 357
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.38 E-value=3e+02 Score=21.15 Aligned_cols=51 Identities=6% Similarity=0.090 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 036107 263 FRKVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLT 315 (441)
Q Consensus 263 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 315 (441)
.+.+..+++.+.+.|..-|..--...+....+.| .....|-.++..+|+..
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~ 96 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISR 96 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCH
Confidence 3455566666666666544443344455544433 23445666666666654
No 358
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.30 E-value=53 Score=24.21 Aligned_cols=54 Identities=13% Similarity=0.028 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCccHHHHHHHHhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036107 132 TYNAMVEALGKSKKFGLMWELVKEIDELSNGYVSLAAMSTVMRRLDTRAMSVLMDTLVKRNSVAHAYKVF 201 (441)
Q Consensus 132 ~y~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 201 (441)
.|--.|..-+.+++.+-|.++++-..+.| +.+.|.+++-.|-..=+++.++++-
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g----------------~kEcF~A~LytCYdLlrpDvVLEla 87 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE----------------KRECFGACLFTCYDLLRPDVVLELA 87 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC----------------SHHHHHHHHHHHTTCSCTTHHHHTT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------chHHHHHHHHHHHhccChHHHHHHH
Confidence 46666888889999999999999999888 8899999999998888888777653
No 359
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.29 E-value=1.5e+02 Score=23.98 Aligned_cols=45 Identities=9% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhCCCCcHHHHHHHHHH-----HHhcCCHHHHHHHHHHH
Q 036107 194 VAHAYKVFLKFKDCISLSSQIFDVLIHG-----WCKTRKSDYAQKAMKEM 238 (441)
Q Consensus 194 ~~~a~~~~~~~~~~~~~~~~~~~~li~~-----~~~~~~~~~a~~~~~~m 238 (441)
++.|+.+++.++.....-...-..||.. |.+.|.+++|.++|++.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
No 360
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=20.29 E-value=7.4e+02 Score=25.72 Aligned_cols=210 Identities=5% Similarity=0.007 Sum_probs=116.2
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHhhHHH---HHHHHHhcCCHH
Q 036107 188 LVKRNSVAHAYKVFLKFKDCISLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGVSYTC---FIEHYCREKDFR 264 (441)
Q Consensus 188 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---li~~~~~~g~~~ 264 (441)
+.-.|+-+-...+++.+.+...-+..-+-++--++.-.|+.+.+..+.+.+... .....-|.. +.-+|+..|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred hcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHH
Confidence 445677777777777764432222222223333445678888888888888763 112233432 334566788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCccchHHHHHHHHH
Q 036107 265 KVDYTLKEMQEKGCKPSVITCTIVMHALEKAKQIYEALKVYEKMKSDDCLTDTSFYSSLIFILSKAVRFLIYNTMISSAC 344 (441)
Q Consensus 265 ~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~li~~~~ 344 (441)
...+++..+.+.. ..+......+--++.-.|+.+.+.++++.+.+.+ .|...- --.+.-|..
T Consensus 578 aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~----------------gAalALGli 639 (963)
T 4ady_A 578 AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRC----------------GTAFALGIA 639 (963)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHH----------------HHHHHHHHH
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHH----------------HHHHHHHHh
Confidence 8888999888752 1233333333334555677777778887776654 333321 222333333
Q ss_pred hcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CChh----hHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 036107 345 VRSEE-GNALKLRQKIEEDSCKPDCETHARSLKMCCHK--KRMK----DGMLVLNLMREMLSK-GIVPQESTHKMLAEEL 416 (441)
Q Consensus 345 ~~g~~-~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~--g~~~----~a~~~~~~~~~m~~~-~~~p~~~~~~~ll~~~ 416 (441)
..|.. .+|++++..+.. .+|..+=...+.+++.. |..+ +..++.+.+...... .-.++...-..+..+.
T Consensus 640 ~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGl 716 (963)
T 4ady_A 640 CAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGI 716 (963)
T ss_dssp TSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 34443 578888888864 45555444444444433 3222 244444444444432 3345566666777777
Q ss_pred HhcC
Q 036107 417 EKKS 420 (441)
Q Consensus 417 ~~~g 420 (441)
...|
T Consensus 717 l~aG 720 (963)
T 4ady_A 717 MNAG 720 (963)
T ss_dssp HTTG
T ss_pred HhcC
Confidence 6655
No 361
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=20.15 E-value=2.5e+02 Score=20.26 Aligned_cols=75 Identities=8% Similarity=-0.000 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCccHHHH
Q 036107 349 EGNALKLRQKIEEDSCKPDCETHARSLKMCCHKKRMKDGMLVLNLMREMLS-KGIVPQESTHKMLAEELEKKSLGNAKER 427 (441)
Q Consensus 349 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 427 (441)
+.+|+.-+++.... .+|......++..+... ++.+.+ +++...+ .|+ ++.++.-.++...+.|-.++. +
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk---~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~ 73 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWK---TLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-P 73 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHH---HHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-H
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHH---HHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-H
Confidence 45566666665433 45655666666655432 333422 3333222 355 355667777777777766655 3
Q ss_pred HHHHHH
Q 036107 428 IDELLT 433 (441)
Q Consensus 428 ~~~~m~ 433 (441)
.|..|.
T Consensus 74 ~w~~m~ 79 (119)
T 1wty_A 74 FWLEML 79 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 362
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=20.15 E-value=3.7e+02 Score=22.20 Aligned_cols=147 Identities=12% Similarity=0.138 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHh-cCCCccHHHHHHHHhhcCHHHHHHHHHHHH-hcCCHHHHHHHHHHh--hhCCCCcHHHHHHHHHHH
Q 036107 147 GLMWELVKEIDEL-SNGYVSLAAMSTVMRRLDTRAMSVLMDTLV-KRNSVAHAYKVFLKF--KDCISLSSQIFDVLIHGW 222 (441)
Q Consensus 147 ~~a~~l~~~m~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~--~~~~~~~~~~~~~li~~~ 222 (441)
++..++|+..... +.+.. +..-+..++..+. .....+.+..+|..+ ...-..+..-|..++..+
T Consensus 91 ~ei~~l~~~fd~~~~~G~I------------~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~ 158 (256)
T 2jul_A 91 KELQSLYRGFKNECPTGLV------------DEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSIL 158 (256)
T ss_dssp HHHHHHHHHHHHHCTTSSE------------EHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCcC------------CHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc----C-----------CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036107 223 CKTRKSDYAQKAMKEMFQHGFSPDGVSYTCFIEHYCRE----K-----------DFRKVDYTLKEMQEKGCKPSVITCTI 287 (441)
Q Consensus 223 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g-----------~~~~a~~l~~~m~~~g~~p~~~~~~~ 287 (441)
......+....+|+.+-..| -...++.-+...+... | .-+.+..+|+.+-..|- ...+|.-
T Consensus 159 ~~~~~~~~l~~~F~~~D~d~--dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~d--G~Is~~E 234 (256)
T 2jul_A 159 LRGTVHEKLKWAFNLYDINK--DGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQD--GVVTIDE 234 (256)
T ss_dssp HSCCHHHHHHHHHHHTCCSS--SSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCSTT--CSBCHHH
T ss_pred hccChHHHHHHHHHHhCCCC--CCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCCC--CcEeHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 036107 288 VMHALEKAKQIYEALKVYEKMK 309 (441)
Q Consensus 288 ll~~~~~~~~~~~a~~~~~~m~ 309 (441)
++..+.+...+-++...|+.+.
T Consensus 235 f~~~~~~~~~l~~~l~~~d~~~ 256 (256)
T 2jul_A 235 FLETCQKDENIMNSMQLFENVI 256 (256)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHC
T ss_pred HHHHHHhCHHHHHHHHhhcccC
No 363
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=20.08 E-value=1.1e+02 Score=26.74 Aligned_cols=119 Identities=8% Similarity=0.075 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHh---hHHHHHHHHH
Q 036107 183 VLMDTLVKRNSVAHAYKVFLKFKDCI-SLSSQIFDVLIHGWCKTRKSDYAQKAMKEMFQHGFSPDGV---SYTCFIEHYC 258 (441)
Q Consensus 183 ~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~ 258 (441)
..+...++.|+.+....++......+ ..|.. -.+.+...+..|+.+-+..++ +.|..++.. -++. +...+
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~-L~~A~ 99 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPLNVNCHASDGR-KSTPLHLAAGYNRVRIVQLLL----QHGADVHAKDKGGLVP-LHNAC 99 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTT-CCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCH-HHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCC-CCCHHHHHHHcCCHHHHHHHH----HcCCCCCccCCCCCcH-HHHHH
Confidence 44556677899998888876542211 12222 223455566778876555554 445555432 3334 44455
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 036107 259 REKDFRKVDYTLKEMQEKGCKPSVI---TCTIVMHALEKAKQIYEALKVYEKMKSDDCLTD 316 (441)
Q Consensus 259 ~~g~~~~a~~l~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 316 (441)
..|+.+-+. .+.+.|..++.. .++ .+...+..|+.+-+..++ +.|..|+
T Consensus 100 ~~g~~~iv~----~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll----~~g~~~~ 151 (351)
T 3utm_A 100 SYGHYEVTE----LLLKHGACVNAMDLWQFT-PLHEAASKNRVEVCSLLL----SHGADPT 151 (351)
T ss_dssp HTTCHHHHH----HHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHH----HTTCCTT
T ss_pred HCCCHHHHH----HHHHCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH----HcCCCCc
Confidence 667766444 444556544421 222 344445667766554444 4454443
Done!