BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036113
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 137 bits (345), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 132/285 (46%), Gaps = 16/285 (5%)
Query: 37 FGTSGLAVAVASAVTHPLDVLKVRLQMQFVGQ-------KGPLNGMGRLFLQILKKEGPK 89
F +G A +A +T PLD KVRLQ+Q Q G+ L +++ EGP+
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 90 SLYLGLTPALTRSILYGGLRLGLYEPSKYACDWAFGSTNILVKIXXXXXXXXXXXXLTNP 149
SLY GL L R + + +R+GLY+ K I ++ + P
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQP 124
Query: 150 TEVLKVRLQMNSSM----KQSGSIAEMRRLISEEGIRALWKGVGPXXXXXXXXXXXXXXX 205
T+V+KVR Q + + ++ + + EEGIR LWKG P
Sbjct: 125 TDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVT 184
Query: 206 YDESKRILIRWTPLEEGFHLHLISSAVAGTMSTLITAPVDMVKTRLMLQRESRKVGSYKN 265
YD K L++ + + H S+ AG +T+I +PVD+VKTR M + +G Y +
Sbjct: 185 YDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYM----NSALGQYHS 240
Query: 266 GFHCAYQVVCTEGPRALYKGRGFAVFARLGPQSTITFILCEKLRE 310
HCA ++ EGPRA YKG F RLG + + F+ E+L+
Sbjct: 241 AGHCALTMLRKEGPRAFYKGF-MPSFLRLGSWNVVMFVTYEQLKR 284
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 4/173 (2%)
Query: 45 AVASAVTHPLDVLKVRLQMQFVGQKGP-LNGMGRLFLQILKKEGPKSLYLGLTPALTRSI 103
A+A AV P DV+KVR Q Q G + I ++EG + L+ G +P + R+
Sbjct: 116 ALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNA 175
Query: 104 LYGGLRLGLYEPSKYACDWAFGSTNIL-VKIXXXXXXXXXXXXLTNPTEVLKVRLQMNSS 162
+ L Y+ K A T+ L + +P +V+K R MNS+
Sbjct: 176 IVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRY-MNSA 234
Query: 163 MKQSGSIAEMR-RLISEEGIRALWKGVGPXXXXXXXXXXXXXXXYDESKRILI 214
+ Q S ++ +EG RA +KG P Y++ KR L+
Sbjct: 235 LGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 30 PSHIVHHFGTSGLAVAVASAVTHPLDVLKVRLQMQFVGQKGPLNGMGRLFLQILKKEGPK 89
P H FG +AS P+DV+K R +GQ + G L +L+KEGP+
Sbjct: 203 PCHFTSAFGAGFCTTVIAS----PVDVVKTRYMNSALGQ---YHSAGHCALTMLRKEGPR 255
Query: 90 SLYLGLTPALTRSILYGGLRLGLYEPSKYACDWAFGS 126
+ Y G P+ R + + YE K A A+ S
Sbjct: 256 AFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQS 292
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 22/170 (12%)
Query: 32 HIVHHFGTSGLAVAVASAVTHPLDVLKVRLQMQFVGQKGP---LNGMGRLFLQILKKEGP 88
+ + + G A A + +PLD + RL VG+ G+G +I K +G
Sbjct: 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKGAAQREFTGLGNCITKIFKSDGL 169
Query: 89 KSLYLGLTPALTRSILYGGLRLGLYEPSKYACDWAFG------STNILVKIXXXXXXXXX 142
+ LY G ++ I+Y G+Y+ +K G + +I+V
Sbjct: 170 RGLYQGFNVSVQGIIIYRAAYFGVYDTAK-------GMLPDPKNVHIIVSWMIAQTVTAV 222
Query: 143 XXXLTNPTEVLKVRLQMNSSMK-----QSGSIAEMRRLISEEGIRALWKG 187
++ P + ++ R+ M S K +G++ R++ +EG +A +KG
Sbjct: 223 AGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKG 272
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/276 (19%), Positives = 108/276 (39%), Gaps = 33/276 (11%)
Query: 33 IVHHFGTSGLAVAVASAVTHPLDVLKVRLQMQF----VGQKGPLNGMGRLFLQILKKEGP 88
+ F G+A A++ P++ +K+ LQ+Q + + G+ ++I K++G
Sbjct: 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGF 66
Query: 89 KSLYLGLTPALTRSILYGGLRLGLYEPSK---------YACDWAFGSTNILVKIXXXXXX 139
S + G + R L + K + W + + N+
Sbjct: 67 LSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNL----ASGGAA 122
Query: 140 XXXXXXLTNPTEVLKVRLQMN-----SSMKQSGSIAEMRRLISEEGIRALWKGVGPXXXX 194
P + + RL + + + +G + ++ +G+R L++G
Sbjct: 123 GATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQG 182
Query: 195 XXXXXXXXXXXYDESKRILIRWTPLEEGFHLHLISSAVAGTMST---LITAPVDMVKTRL 251
YD +K +L P + H+ ++S +A T++ L++ P D V+ R+
Sbjct: 183 IIIYRAAYFGVYDTAKGML----PDPKNVHI-IVSWMIAQTVTAVAGLVSYPFDTVRRRM 237
Query: 252 MLQRESRKVGS--YKNGFHCAYQVVCTEGPRALYKG 285
M+Q RK Y C ++ EGP+A +KG
Sbjct: 238 MMQ-SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKG 272
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 32 HIVHHFGTSGLAVAVASAVTHPLDVLKVRLQMQFVGQKGP---LNGMGRLFLQILKKEGP 88
HI+ + + AVA V++P D ++ R+ MQ G+KG G + +I K EGP
Sbjct: 208 HIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQ-SGRKGADIMYTGTVDCWRKIAKDEGP 266
Query: 89 KSLYLGLTPALTRSILYGGLRLGLYEPSK 117
K+ + G + R + G L LY+ K
Sbjct: 267 KAFFKGAWSNVLRG-MGGAFVLVLYDEIK 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,407,307
Number of Sequences: 62578
Number of extensions: 304442
Number of successful extensions: 541
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 9
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)