Query 036113
Match_columns 317
No_of_seqs 150 out of 1977
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 16:11:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 1.7E-57 5.7E-62 400.3 27.9 275 35-314 3-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 2.5E-56 8.7E-61 391.8 28.4 279 30-312 4-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 1.2E-35 4.2E-40 260.3 20.9 185 128-313 6-202 (297)
4 2lck_A Mitochondrial uncouplin 100.0 2.6E-36 8.9E-41 265.2 16.4 201 14-214 82-287 (303)
5 3tgu_G UQCRQ, mitochondrial ub 23.0 1.4E+02 0.0047 19.7 4.4 41 180-220 33-73 (81)
6 1pp9_G Ubiquinol-cytochrome C 18.5 2E+02 0.0069 18.8 4.5 43 179-221 32-74 (81)
7 3cx5_H Cytochrome B-C1 complex 18.4 1.1E+02 0.0036 20.8 3.1 35 277-312 42-76 (93)
8 2bnk_A Early protein GP16.7; D 16.7 82 0.0028 19.1 2.0 44 240-285 21-64 (67)
9 3fbl_A Putative uncharacterize 12.3 81 0.0028 19.4 1.1 31 264-295 2-36 (82)
10 2acm_A Mucin-1; auto-catalytic 11.9 30 0.001 21.2 -0.9 20 73-92 40-59 (66)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.7e-57 Score=400.27 Aligned_cols=275 Identities=36% Similarity=0.581 Sum_probs=251.8
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHhcccCC-------CCCCCcHHHHHHHHHHhhChhhhhcchhHHHHHHHHhhh
Q 036113 35 HHFGTSGLAVAVASAVTHPLDVLKVRLQMQFVGQ-------KGPLNGMGRLFLQILKKEGPKSLYLGLTPALTRSILYGG 107 (317)
Q Consensus 35 ~~~~~g~~a~~~~~~~~~Pld~vk~r~q~~~~~~-------~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~ 107 (317)
.++++|+++++++.++++|+|+||+|+|++.... ...+.++++++++++++||++|||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 3688999999999999999999999999985421 246789999999999999999999999999999999999
Q ss_pred hhhccchhhHHHhhhccCCccHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCCC----CCCcChHHHHHHHHHhhchhh
Q 036113 108 LRLGLYEPSKYACDWAFGSTNILVKIASGAFAGATATALTNPTEVLKVRLQMNSS----MKQSGSIAEMRRLISEEGIRA 183 (317)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~r~q~~~~----~~~~~~~~~~~~i~~~~G~~g 183 (317)
++|.+||.+|+.+.+..+..+....+++|.++++++.++++|+|+||+|+|++.. .+|.+.++++++|+++||++|
T Consensus 83 i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~g 162 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162 (303)
T ss_dssp HTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhh
Confidence 9999999999988654234566778999999999999999999999999999863 368999999999999999999
Q ss_pred hhccchHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHhhchHHHHHHHhcccccCCCCCCC
Q 036113 184 LWKGVGPAMARAAALTASQLATYDESKRILIRWTPLEEGFHLHLISSAVAGTMSTLITAPVDMVKTRLMLQRESRKVGSY 263 (317)
Q Consensus 184 ly~G~~~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~it~Pld~v~~r~q~~~~~~~~~~~ 263 (317)
||||+.+++++.+|+.+++|.+||.+|+.+.+....+.+....+++|+++|++++++++|+|+||+|||.+.. ..|
T Consensus 163 lyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~----~~y 238 (303)
T 2lck_A 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL----GQY 238 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----SSC
T ss_pred hhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc----ccc
Confidence 9999999999999999999999999999987655556677888999999999999999999999999999875 469
Q ss_pred CCHHHHHHHHHHhhCcccccccchhHHHHhhhhhHHHHHHHHHHHHHHhCC
Q 036113 264 KNGFHCAYQVVCTEGPRALYKGRGFAVFARLGPQSTITFILCEKLRELAGL 314 (317)
Q Consensus 264 ~~~~~~~~~i~~~eG~~~lyrG~~~~~l~~~~~~~~i~~~~~e~~~~~~~~ 314 (317)
++.++|+++++++||++||||| +.++++|.+|.++++|.+||.+|+.++.
T Consensus 239 ~~~~~~~~~i~~~eG~~glyrG-~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 239 HSAGHCALTMLRKEGPRAFYKG-FMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp CSHHHHHHHHHHSSCTHHHHSC-CHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred CCHHHHHHHHHHHcChHHhhcc-HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 9999999999999999999999988753
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.5e-56 Score=391.83 Aligned_cols=279 Identities=20% Similarity=0.328 Sum_probs=242.6
Q ss_pred chhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHhcccC----CCCCCCcHHHHHHHHHHhhChhhhhcchhHHHHHHHHh
Q 036113 30 PSHIVHHFGTSGLAVAVASAVTHPLDVLKVRLQMQFVG----QKGPLNGMGRLFLQILKKEGPKSLYLGLTPALTRSILY 105 (317)
Q Consensus 30 ~~~~~~~~~~g~~a~~~~~~~~~Pld~vk~r~q~~~~~----~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~ 105 (317)
+.+.+.++++|+++++++.++.+|+|+||+|+|++... ....++++++++++++++||++|||||+.+++++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 34567899999999999999999999999999998542 12357899999999999999999999999999999999
Q ss_pred hhhhhccchhhHHHh-hhccCCc----cHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCCC-----CCCcChHHHHHHH
Q 036113 106 GGLRLGLYEPSKYAC-DWAFGST----NILVKIASGAFAGATATALTNPTEVLKVRLQMNSS-----MKQSGSIAEMRRL 175 (317)
Q Consensus 106 ~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~g~~a~~~~~~~~~Pld~ik~r~q~~~~-----~~~~~~~~~~~~i 175 (317)
.+++|.+||.+++.+ ....... .....+++|+++++++.++++|+|+||+|+|++.. .+|.+.+++++++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i 163 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI 163 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHH
Confidence 999999999999854 3222222 23556899999999999999999999999998753 3688999999999
Q ss_pred HHhhchhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHhhchHHHHHHHhcccc
Q 036113 176 ISEEGIRALWKGVGPAMARAAALTASQLATYDESKRILIRWTPLEEGFHLHLISSAVAGTMSTLITAPVDMVKTRLMLQR 255 (317)
Q Consensus 176 ~~~~G~~gly~G~~~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~it~Pld~v~~r~q~~~ 255 (317)
+++||++|||||+.+++++.+|+.+++|.+||.+|+.+.+. .+.+....+++|+++|++++++++|+|+||+|||.+.
T Consensus 164 ~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~ 241 (297)
T 1okc_A 164 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQS 241 (297)
T ss_dssp HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999977542 2456777899999999999999999999999999986
Q ss_pred cC-CCCCCCCCHHHHHHHHHHhhCcccccccchhHHHHhhhhhHHHHHHHHHHHHHHh
Q 036113 256 ES-RKVGSYKNGFHCAYQVVCTEGPRALYKGRGFAVFARLGPQSTITFILCEKLRELA 312 (317)
Q Consensus 256 ~~-~~~~~~~~~~~~~~~i~~~eG~~~lyrG~~~~~l~~~~~~~~i~~~~~e~~~~~~ 312 (317)
.. .....|++.++|+++++++||++||||| +.++++|. +..++.|.+||.+|+++
T Consensus 242 ~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG-~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 242 GRKGADIMYTGTVDCWRKIAKDEGPKAFFKG-AWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TCCGGGCSCSSHHHHHHHHHHHHCGGGGGTT-HHHHHHHH-HHHHHHHHHHHTC----
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCcCeEecc-hHHHHHhh-ccceeeehHHHHHHhhC
Confidence 42 2345799999999999999999999999 99999995 67899999999998764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.2e-35 Score=260.29 Aligned_cols=185 Identities=22% Similarity=0.286 Sum_probs=164.2
Q ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCCC-------CCCcChHHHHHHHHHhhchhhhhccchHHHHHHHHHhh
Q 036113 128 NILVKIASGAFAGATATALTNPTEVLKVRLQMNSS-------MKQSGSIAEMRRLISEEGIRALWKGVGPAMARAAALTA 200 (317)
Q Consensus 128 ~~~~~~~~g~~a~~~~~~~~~Pld~ik~r~q~~~~-------~~~~~~~~~~~~i~~~~G~~gly~G~~~~~l~~~~~~~ 200 (317)
+....+++|.++++++.++++|+|+||+|+|++.. .+|++.++++++++++||++|||||+.+.+++.+|..+
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 44567999999999999999999999999998752 36889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhCCCCC----chHHHHHHHHHHHHHHHHhhchHHHHHHHhcccccC-CCCCCCCCHHHHHHHHHH
Q 036113 201 SQLATYDESKRILIRWTPLEE----GFHLHLISSAVAGTMSTLITAPVDMVKTRLMLQRES-RKVGSYKNGFHCAYQVVC 275 (317)
Q Consensus 201 ~~~~~y~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~~~it~Pld~v~~r~q~~~~~-~~~~~~~~~~~~~~~i~~ 275 (317)
++|.+||.+|+.+....+.+. +....+++|+++|++++++++|+|+||+|||.+... .....|.+.++|++++++
T Consensus 86 ~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~ 165 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFK 165 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHH
Confidence 999999999996543322222 345679999999999999999999999999998642 234578999999999999
Q ss_pred hhCcccccccchhHHHHhhhhhHHHHHHHHHHHHHHhC
Q 036113 276 TEGPRALYKGRGFAVFARLGPQSTITFILCEKLRELAG 313 (317)
Q Consensus 276 ~eG~~~lyrG~~~~~l~~~~~~~~i~~~~~e~~~~~~~ 313 (317)
+||++||||| +.++++|.+|..++.|.+||.+|+.++
T Consensus 166 ~eG~~glyrG-~~~~l~~~~~~~~~~f~~ye~~k~~~~ 202 (297)
T 1okc_A 166 SDGLRGLYQG-FNVSVQGIIIYRAAYFGVYDTAKGMLP 202 (297)
T ss_dssp HHCHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hccHHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 999999999999999999999999875
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.6e-36 Score=265.18 Aligned_cols=201 Identities=24% Similarity=0.301 Sum_probs=177.9
Q ss_pred eeeeehhhhccccCCC---chhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHhcccC-CCCCCCcHHHHHHHHHHhhChh
Q 036113 14 AVEVKVGEKQKNWSTT---PSHIVHHFGTSGLAVAVASAVTHPLDVLKVRLQMQFVG-QKGPLNGMGRLFLQILKKEGPK 89 (317)
Q Consensus 14 ~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~a~~~~~~~~~Pld~vk~r~q~~~~~-~~~~~~~~~~~~~~i~~~~G~~ 89 (317)
++.|..+|..++.... ..+....+++|+++++++.++++|+|+||+|+|++... ....+.++++++++|+++||++
T Consensus 82 ~i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~ 161 (303)
T 2lck_A 82 SVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIR 161 (303)
T ss_dssp HHTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChh
Confidence 5567777776655432 35668899999999999999999999999999998532 2346789999999999999999
Q ss_pred hhhcchhHHHHHHHHhhhhhhccchhhHHHhhhccC-CccHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCCCCCCcCh
Q 036113 90 SLYLGLTPALTRSILYGGLRLGLYEPSKYACDWAFG-STNILVKIASGAFAGATATALTNPTEVLKVRLQMNSSMKQSGS 168 (317)
Q Consensus 90 glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~r~q~~~~~~~~~~ 168 (317)
|||||+.+++++.++..+++|.+||.+|+.+.+... ..+....+++|++++++++++++|+|+||+|+|.+....|.+.
T Consensus 162 glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~ 241 (303)
T 2lck_A 162 GLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSA 241 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSH
T ss_pred hhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCH
Confidence 999999999999999999999999999998865432 4456677999999999999999999999999999987789999
Q ss_pred HHHHHHHHHhhchhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHH
Q 036113 169 IAEMRRLISEEGIRALWKGVGPAMARAAALTASQLATYDESKRILI 214 (317)
Q Consensus 169 ~~~~~~i~~~~G~~gly~G~~~~~l~~~~~~~~~~~~y~~~~~~~~ 214 (317)
++++++++++||++|||||+.+++++.+|..+++|.+||.+|+.+.
T Consensus 242 ~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 242 GHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp HHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997664
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=23.05 E-value=1.4e+02 Score=19.66 Aligned_cols=41 Identities=10% Similarity=0.180 Sum_probs=29.7
Q ss_pred chhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 036113 180 GIRALWKGVGPAMARAAALTASQLATYDESKRILIRWTPLE 220 (317)
Q Consensus 180 G~~gly~G~~~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~ 220 (317)
|+...+|-+...++..+|..++.+.+|+..++.......++
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKn 73 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKN 73 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44444555567778888999999999999988876655443
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=18.52 E-value=2e+02 Score=18.82 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=31.4
Q ss_pred hchhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCC
Q 036113 179 EGIRALWKGVGPAMARAAALTASQLATYDESKRILIRWTPLEE 221 (317)
Q Consensus 179 ~G~~gly~G~~~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 221 (317)
+|+...+|-+.-.++..+|..++.+.+|+..++.......+++
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKnp 74 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKNP 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCCH
Confidence 3455556666777778889999999999999888766555443
No 7
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=18.38 E-value=1.1e+02 Score=20.81 Aligned_cols=35 Identities=9% Similarity=-0.045 Sum_probs=29.3
Q ss_pred hCcccccccchhHHHHhhhhhHHHHHHHHHHHHHHh
Q 036113 277 EGPRALYKGRGFAVFARLGPQSTITFILCEKLRELA 312 (317)
Q Consensus 277 eG~~~lyrG~~~~~l~~~~~~~~i~~~~~e~~~~~~ 312 (317)
+|+...+|- +...++.++|...+...+|+..++..
T Consensus 42 ~~i~N~~RR-~~~q~l~v~pPfv~~Y~i~~Wa~~~~ 76 (93)
T 3cx5_H 42 NAVFNSFRR-FKSQFLYVLIPAGIYWYWWKNGNEYN 76 (93)
T ss_dssp TTSSSCSHH-HHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHH-HHhcceEEechHhHHHHHHHHHHHHH
Confidence 467778888 88889999999999999998877654
No 8
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=16.66 E-value=82 Score=19.12 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=26.9
Q ss_pred hhchHHHHHHHhcccccCCCCCCCCCHHHHHHHHHHhhCccccccc
Q 036113 240 ITAPVDMVKTRLMLQRESRKVGSYKNGFHCAYQVVCTEGPRALYKG 285 (317)
Q Consensus 240 it~Pld~v~~r~q~~~~~~~~~~~~~~~~~~~~i~~~eG~~~lyrG 285 (317)
|--|.|.|.--. .+.. .....-.++...-|.-|+-|.-+.+|||
T Consensus 21 IrIP~DIIEdl~-~~~L-~te~EVmnYiEnqR~~WKLEN~KKly~g 64 (67)
T 2bnk_A 21 IRIPSDIIEDLV-NQRL-QSEQEVLNYIETQRTYWKLENQKKLYRG 64 (67)
T ss_dssp CCCCHHHHHHHH-TTCC-CCSHHHHHHHHHHHHHHHHHTTSCCCCS
T ss_pred CcCcHHHHHHHH-HHhh-hhHHHHHHHHHhhHhHHhhhhhHHHHhc
Confidence 456888887654 2222 1111122334445677999999999999
No 9
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=12.29 E-value=81 Score=19.39 Aligned_cols=31 Identities=10% Similarity=-0.055 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHhhCcc----cccccchhHHHHhhh
Q 036113 264 KNGFHCAYQVVCTEGPR----ALYKGRGFAVFARLG 295 (317)
Q Consensus 264 ~~~~~~~~~i~~~eG~~----~lyrG~~~~~l~~~~ 295 (317)
+...-.++++.+.+|+- |.|-. |+-.+++.-
T Consensus 2 hklrlaikeicktdgipnikwgmyia-fgekllksy 36 (82)
T 3fbl_A 2 HKLRLAIKEICKTDGIPNIKWGMYIA-FGEKLLKSY 36 (82)
T ss_dssp HHHHHHHHHHHHHTTCCGGGHHHHHH-HHHHHHHHH
T ss_pred hhHHHHHHHHHccCCCCcchhHHHHH-HHHHHHHHH
Confidence 34456778999999975 56666 666766654
No 10
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=11.87 E-value=30 Score=21.18 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=15.8
Q ss_pred CcHHHHHHHHHHhhChhhhh
Q 036113 73 NGMGRLFLQILKKEGPKSLY 92 (317)
Q Consensus 73 ~~~~~~~~~i~~~~G~~gly 92 (317)
+++.+.+.+||+++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 45667888899999988876
Done!