Query 036114
Match_columns 134
No_of_seqs 211 out of 1513
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 09:33:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158 Cytochrome P450 CYP3/C 100.0 1.3E-33 2.9E-38 215.5 12.3 126 4-132 373-499 (499)
2 KOG0156 Cytochrome P450 CYP2 s 100.0 9.4E-34 2E-38 217.4 11.2 127 1-133 363-489 (489)
3 PLN03234 cytochrome P450 83B1; 100.0 1E-32 2.3E-37 212.6 12.3 130 2-131 366-498 (499)
4 PLN02394 trans-cinnamate 4-mon 100.0 1.6E-32 3.5E-37 211.7 12.7 130 1-132 370-502 (503)
5 PLN00168 Cytochrome P450; Prov 100.0 1.4E-32 3E-37 213.0 12.3 130 2-134 385-519 (519)
6 PLN02971 tryptophan N-hydroxyl 100.0 1.5E-32 3.2E-37 213.9 12.3 129 1-132 404-534 (543)
7 KOG0157 Cytochrome P450 CYP4/C 100.0 1.1E-32 2.5E-37 212.6 10.8 126 3-133 370-497 (497)
8 PLN02183 ferulate 5-hydroxylas 100.0 2.1E-32 4.6E-37 211.8 11.9 129 4-132 383-512 (516)
9 PLN02687 flavonoid 3'-monooxyg 100.0 4.3E-32 9.2E-37 210.2 12.6 131 2-132 375-509 (517)
10 PLN02966 cytochrome P450 83A1 100.0 4.1E-32 8.9E-37 209.6 12.5 127 3-129 370-497 (502)
11 PLN00110 flavonoid 3',5'-hydro 100.0 4E-32 8.7E-37 209.9 11.9 128 2-132 367-497 (504)
12 PTZ00404 cytochrome P450; Prov 100.0 5.8E-32 1.3E-36 207.7 12.3 121 2-131 361-482 (482)
13 PLN02169 fatty acid (omega-1)- 100.0 7.2E-32 1.6E-36 208.3 12.6 123 4-131 374-499 (500)
14 PF00067 p450: Cytochrome P450 100.0 5.5E-32 1.2E-36 203.2 10.6 103 2-104 340-442 (463)
15 PLN03112 cytochrome P450 famil 100.0 2.1E-31 4.5E-36 206.1 12.9 132 2-133 374-509 (514)
16 PLN02655 ent-kaurene oxidase 100.0 2.1E-31 4.6E-36 204.1 12.2 127 2-133 339-465 (466)
17 PLN02500 cytochrome P450 90B1 100.0 2.2E-31 4.8E-36 205.0 11.7 120 4-130 363-488 (490)
18 PLN03018 homomethionine N-hydr 100.0 8.2E-31 1.8E-35 203.8 13.6 128 2-132 392-524 (534)
19 PLN03141 3-epi-6-deoxocathaste 100.0 3.3E-31 7E-36 202.3 11.1 119 3-133 333-451 (452)
20 PLN02738 carotene beta-ring hy 100.0 6.5E-31 1.4E-35 207.5 13.2 126 4-133 469-596 (633)
21 PLN02290 cytokinin trans-hydro 100.0 4.6E-31 9.9E-36 204.2 11.9 122 3-132 393-515 (516)
22 PLN02426 cytochrome P450, fami 100.0 8.8E-31 1.9E-35 202.4 12.3 128 4-134 373-502 (502)
23 PLN02774 brassinosteroid-6-oxi 100.0 1.4E-30 2.9E-35 199.5 11.5 118 3-130 345-462 (463)
24 PLN03195 fatty acid omega-hydr 100.0 8.3E-31 1.8E-35 202.9 10.3 123 5-132 392-516 (516)
25 PLN02302 ent-kaurenoic acid ox 100.0 3.7E-30 8E-35 197.7 11.6 120 4-133 370-489 (490)
26 PLN02936 epsilon-ring hydroxyl 100.0 7.4E-30 1.6E-34 196.6 12.2 126 2-132 355-482 (489)
27 PLN02987 Cytochrome P450, fami 100.0 8.5E-30 1.8E-34 195.7 11.8 122 3-132 348-469 (472)
28 KOG0159 Cytochrome P450 CYP11/ 100.0 9.1E-30 2E-34 192.7 9.9 124 3-132 395-518 (519)
29 PLN02196 abscisic acid 8'-hydr 100.0 1.2E-29 2.6E-34 194.3 10.1 117 4-131 346-462 (463)
30 KOG0684 Cytochrome P450 [Secon 99.9 5.7E-27 1.2E-31 174.7 9.1 126 3-132 352-485 (486)
31 COG2124 CypX Cytochrome P450 [ 99.9 4.4E-26 9.5E-31 172.6 10.1 89 4-102 299-387 (411)
32 PLN02648 allene oxide synthase 99.9 3.4E-24 7.3E-29 164.9 9.9 97 4-103 353-463 (480)
33 PF12508 DUF3714: Protein of u 76.9 2.7 5.8E-05 29.3 2.6 20 8-27 75-94 (200)
34 PF08492 SRP72: SRP72 RNA-bind 71.4 3 6.5E-05 23.2 1.4 8 46-53 44-51 (59)
35 PF09201 SRX: SRX; InterPro: 66.6 5 0.00011 26.3 1.9 23 73-95 19-41 (148)
36 TIGR03779 Bac_Flav_CT_M Bacter 51.5 14 0.00031 28.7 2.4 20 8-27 278-297 (410)
37 COG2101 SPT15 TATA-box binding 47.8 5.1 0.00011 27.3 -0.4 36 43-78 35-70 (185)
38 cd04516 TBP_eukaryotes eukaryo 47.8 12 0.00026 25.5 1.4 56 43-98 29-86 (174)
39 PF14550 Peptidase_U35_2: Puta 46.2 15 0.00032 23.6 1.5 21 7-27 72-92 (122)
40 PRK14759 potassium-transportin 45.4 9 0.0002 18.0 0.4 6 45-50 24-29 (29)
41 PLN00062 TATA-box-binding prot 43.5 19 0.0004 24.7 1.8 55 43-97 29-85 (179)
42 PF11138 DUF2911: Protein of u 43.3 23 0.00049 23.4 2.2 19 9-27 53-71 (145)
43 PF09604 Potass_KdpF: F subuni 42.8 11 0.00023 17.1 0.4 6 45-50 20-25 (25)
44 cd00652 TBP_TLF TATA box bindi 40.2 23 0.0005 24.0 1.9 56 43-99 29-87 (174)
45 cd04518 TBP_archaea archaeal T 40.1 7.1 0.00015 26.6 -0.6 35 43-77 29-63 (174)
46 PF00352 TBP: Transcription fa 38.6 17 0.00037 21.4 0.9 35 43-77 31-65 (86)
47 PF11227 DUF3025: Protein of u 38.5 18 0.00039 25.5 1.2 25 25-49 186-211 (212)
48 PRK00394 transcription factor; 36.3 29 0.00064 23.7 1.9 34 43-76 28-61 (179)
49 PF01629 DUF22: Domain of unkn 35.3 44 0.00096 21.1 2.5 25 15-39 60-84 (112)
50 PF12444 Sox_N: Sox developmen 34.9 32 0.0007 20.5 1.7 20 82-101 60-79 (84)
51 KOG3506 40S ribosomal protein 31.5 23 0.00049 19.3 0.6 10 66-75 13-22 (56)
52 TIGR02115 potass_kdpF K+-trans 30.7 13 0.00027 17.1 -0.4 7 45-51 19-25 (26)
53 PHA03162 hypothetical protein; 26.5 50 0.0011 21.4 1.6 24 68-91 2-25 (135)
54 KOG3302 TATA-box binding prote 25.0 35 0.00076 23.7 0.8 35 43-77 50-84 (200)
55 PF02663 FmdE: FmdE, Molybdenu 23.3 91 0.002 19.8 2.5 23 71-93 4-26 (131)
No 1
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-33 Score=215.53 Aligned_cols=126 Identities=37% Similarity=0.607 Sum_probs=110.4
Q ss_pred cceecCCCceEe-cEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcCCCCCCccccccCCCCCCCccHHHHHH
Q 036114 4 VPRETTEDCRIG-EYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGINFAIP 82 (134)
Q Consensus 4 ~~R~~~~d~~l~-g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~ 82 (134)
+.|+|++|+++. ++.|+||+.|.++.|++||||++|+||++|+||||.+++.+ ...+..|+|||.|+|.|+|.+||++
T Consensus 373 ~~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~~-~~~~~~ylPFG~GPR~CIGmRfa~m 451 (499)
T KOG0158|consen 373 LNRECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFEEENNK-SRHPGAYLPFGVGPRNCIGMRFALM 451 (499)
T ss_pred ccceecCceecCCCeEeCCCCEEEeecccccCCcccCCCcccCCCccCCCCccc-ccCCccccCCCCCccccHHHHHHHH
Confidence 679999999999 99999999999999999999999999999999999977643 4467899999999999999999999
Q ss_pred HHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeecc
Q 036114 83 LIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYT 132 (134)
Q Consensus 83 ~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 132 (134)
|+|+.|+.||++|+++..+.+. .. ......++++.+++++.+++.+|.
T Consensus 452 q~K~~L~~lL~~f~~~~~~~t~-~~-~~~~~~~~~l~pk~gi~Lkl~~r~ 499 (499)
T KOG0158|consen 452 EAKLALAHLLRNFSFEVCPTTI-IP-LEGDPKGFTLSPKGGIWLKLEPRD 499 (499)
T ss_pred HHHHHHHHHHhhCEEecCCccc-Cc-ccCCccceeeecCCceEEEEEeCC
Confidence 9999999999999999887332 22 222234778899999999999884
No 2
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.4e-34 Score=217.38 Aligned_cols=127 Identities=56% Similarity=0.934 Sum_probs=111.7
Q ss_pred CcccceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcCCCCCCccccccCCCCCCCccHHHH
Q 036114 1 PLLVPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGINFA 80 (134)
Q Consensus 1 p~~~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a 80 (134)
|+.++|.+.+|++|+||.|||||.|.++.|++||||++|+||++|+||||++++ +.+.....++|||.|+|.|+|..+|
T Consensus 363 Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~-d~~~~~~~~iPFG~GRR~CpG~~La 441 (489)
T KOG0156|consen 363 PLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSN-DGKGLDFKLIPFGSGRRICPGEGLA 441 (489)
T ss_pred cccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCc-cccCCceEecCCCCCcCCCCcHHHH
Confidence 788999999999999999999999999999999999999999999999999974 2233677899999999999999999
Q ss_pred HHHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeeccC
Q 036114 81 IPLIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYTS 133 (134)
Q Consensus 81 ~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~~ 133 (134)
.+++.++++.|+++|+|++..+ .+++.... .++..+.++.+...+|.+
T Consensus 442 ~~~l~l~la~llq~F~w~~~~~----~~d~~e~~-~~~~~~~pl~~~~~~r~~ 489 (489)
T KOG0156|consen 442 RAELFLFLANLLQRFDWKLPGG----KVDMEEAG-LTLKKKKPLKAVPVPRLS 489 (489)
T ss_pred HHHHHHHHHHHHheeeeecCCC----CCCCcccc-cceecCCcceeeeecCCC
Confidence 9999999999999999999876 34444443 667777788888887753
No 3
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00 E-value=1e-32 Score=212.57 Aligned_cols=130 Identities=46% Similarity=0.919 Sum_probs=109.8
Q ss_pred cccceecCCCceEecEEeCCCCEEEechhhhccCcCCC-CCCCccCCCCcCCCCcC--CCCCCccccccCCCCCCCccHH
Q 036114 2 LLVPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYW-EHPFEFRPERFLNSSID--FKGQNYELIPFGVGRRACPGIN 78 (134)
Q Consensus 2 ~~~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~-~~p~~F~P~R~~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~ 78 (134)
+.++|++.+|++++||.||||+.|.++.|++||||++| +||++|+||||+++... ....+..++|||+|+|.|+|++
T Consensus 366 ~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~ 445 (499)
T PLN03234 366 ILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMH 445 (499)
T ss_pred ccCCcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChH
Confidence 34579999999999999999999999999999999999 89999999999975432 1234668999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeec
Q 036114 79 FAIPLIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAY 131 (134)
Q Consensus 79 ~a~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R 131 (134)
+|++|+++++|.|+++|++++.++...+.+......+++..++..+.+.+++|
T Consensus 446 ~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
T PLN03234 446 LGIAMVEIPFANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKH 498 (499)
T ss_pred HHHHHHHHHHHHHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeecC
Confidence 99999999999999999999987643344555555677777887888887766
No 4
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00 E-value=1.6e-32 Score=211.72 Aligned_cols=130 Identities=39% Similarity=0.836 Sum_probs=107.9
Q ss_pred CcccceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcC--CCCCCccccccCCCCCCCccHH
Q 036114 1 PLLVPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSID--FKGQNYELIPFGVGRRACPGIN 78 (134)
Q Consensus 1 p~~~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~ 78 (134)
|+.++|.+.+|++++||.||+||.|.++.|++||||++|++|++|+||||++++.. .......++|||.|+|.|+|++
T Consensus 370 ~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~ 449 (503)
T PLN02394 370 PLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGII 449 (503)
T ss_pred ccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHH
Confidence 34557899999999999999999999999999999999999999999999875421 1223568999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCC-eeeccCCcEEEEEeecc
Q 036114 79 FAIPLIELALASLLYSFDWELPPGMRIEDFDMEEAPG-ITMHKKTLLFLMATAYT 132 (134)
Q Consensus 79 ~a~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~R~ 132 (134)
+|++|+++++|.|+++|++++.++.. .++.....+ +.+..+.++++++.+|.
T Consensus 450 ~A~~e~~~~la~ll~~f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~r~ 502 (503)
T PLN02394 450 LALPILGIVLGRLVQNFELLPPPGQS--KIDVSEKGGQFSLHIAKHSTVVFKPRS 502 (503)
T ss_pred HHHHHHHHHHHHHHHHceeEeCCCCC--cCccccccCceeeccCCCceEEeecCC
Confidence 99999999999999999999876642 244443342 55656669999999996
No 5
>PLN00168 Cytochrome P450; Provisional
Probab=100.00 E-value=1.4e-32 Score=213.00 Aligned_cols=130 Identities=32% Similarity=0.605 Sum_probs=108.0
Q ss_pred cccceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcC-----CCCCCccccccCCCCCCCcc
Q 036114 2 LLVPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSID-----FKGQNYELIPFGVGRRACPG 76 (134)
Q Consensus 2 ~~~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~-----~~~~~~~~~~Fg~G~r~C~G 76 (134)
+.++|.+.+|++++||.||||+.|.++.+++||||++|++|++|+||||++++.. ....+..++|||.|+|.|+|
T Consensus 385 ~~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G 464 (519)
T PLN00168 385 FVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAG 464 (519)
T ss_pred ccCCccCCCCccCCCEEECCCCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCc
Confidence 4568999999999999999999999999999999999999999999999864211 11134579999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeeccCC
Q 036114 77 INFAIPLIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYTST 134 (134)
Q Consensus 77 ~~~a~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~~~ 134 (134)
++||++|++++++.|+++|++++.++.. .+.....+++..+..++.+++++|..|
T Consensus 465 ~~lA~~e~~~~la~ll~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~R~~~ 519 (519)
T PLN00168 465 LGIAMLHLEYFVANMVREFEWKEVPGDE---VDFAEKREFTTVMAKPLRARLVPRRTT 519 (519)
T ss_pred HHHHHHHHHHHHHHHHHHccceeCCCCc---CChhhhceeEEeecCCcEEEEEeccCC
Confidence 9999999999999999999999876532 233222345666677899999999765
No 6
>PLN02971 tryptophan N-hydroxylase
Probab=100.00 E-value=1.5e-32 Score=213.92 Aligned_cols=129 Identities=25% Similarity=0.567 Sum_probs=107.3
Q ss_pred CcccceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcCC--CCCCccccccCCCCCCCccHH
Q 036114 1 PLLVPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSIDF--KGQNYELIPFGVGRRACPGIN 78 (134)
Q Consensus 1 p~~~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~~--~~~~~~~~~Fg~G~r~C~G~~ 78 (134)
|+.++|.+.+|++++||.||||+.|+++.|++||||++|+||++|+||||++++.+. ...+..++|||.|+|.|+|++
T Consensus 404 ~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~ 483 (543)
T PLN02971 404 AFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPA 483 (543)
T ss_pred ccCcceecCCCeeECCEEECCCCEEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHH
Confidence 345789999999999999999999999999999999999999999999999753221 124568999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeecc
Q 036114 79 FAIPLIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYT 132 (134)
Q Consensus 79 ~a~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 132 (134)
||++|+++++|.|+++|++++.++.. .+++....+ ++....++.+.+.+|.
T Consensus 484 lA~~e~~~~la~ll~~f~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~ 534 (543)
T PLN02971 484 LGTAITTMMLARLLQGFKWKLAGSET--RVELMESSH-DMFLSKPLVMVGELRL 534 (543)
T ss_pred HHHHHHHHHHHHHHHhCEEEeCCCCC--CcchhhhcC-cccccccceeeeeecC
Confidence 99999999999999999999876542 344444445 5545558888888873
No 7
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-32 Score=212.61 Aligned_cols=126 Identities=38% Similarity=0.634 Sum_probs=111.6
Q ss_pred ccceecCCCceE-ecEEeCCCCEEEechhhhccCcCCCC-CCCccCCCCcCCCCcCCCCCCccccccCCCCCCCccHHHH
Q 036114 3 LVPRETTEDCRI-GEYEIPSGTRVLINAKAIATDPEYWE-HPFEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGINFA 80 (134)
Q Consensus 3 ~~~R~~~~d~~l-~g~~ip~g~~v~~~~~~~~~~~~~~~-~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a 80 (134)
.+.|.+.+|+++ +||.||||+.|.++.|++|||+.+|+ ||++|+||||+++......++++|+|||+|+|.|+|++||
T Consensus 370 ~~~R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fipFsaGpR~CiG~~fA 449 (497)
T KOG0157|consen 370 LVARKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAFIPFSAGPRNCIGQKFA 449 (497)
T ss_pred hhhcccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCCccccCCCCCcccchhHHHH
Confidence 467999999999 58999999999999999999999997 9999999999975433344578999999999999999999
Q ss_pred HHHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeeccC
Q 036114 81 IPLIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYTS 133 (134)
Q Consensus 81 ~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~~ 133 (134)
++|||++++.++++|++++..+.. ......+++++.+++.|++++|..
T Consensus 450 ~lemKv~l~~ll~~f~~~~~~~~~-----~~~~~~~~l~~~~gl~v~~~~r~~ 497 (497)
T KOG0157|consen 450 MLEMKVVLAHLLRRFRIEPVGGDK-----PKPVPELTLRPKNGLKVKLRPRGS 497 (497)
T ss_pred HHHHHHHHHHHHHheEEEecCCCC-----ceeeeEEEEEecCCeEEEEEeCCC
Confidence 999999999999999999877642 344567889999999999999863
No 8
>PLN02183 ferulate 5-hydroxylase
Probab=99.98 E-value=2.1e-32 Score=211.84 Aligned_cols=129 Identities=43% Similarity=0.821 Sum_probs=106.3
Q ss_pred cceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcC-CCCCCccccccCCCCCCCccHHHHHH
Q 036114 4 VPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSID-FKGQNYELIPFGVGRRACPGINFAIP 82 (134)
Q Consensus 4 ~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~-~~~~~~~~~~Fg~G~r~C~G~~~a~~ 82 (134)
+.|++.+|++++||.||||+.|.++.|++||||++|+||++|+||||++++.. .......|+|||.|+|.|+|+++|++
T Consensus 383 ~~r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~ 462 (516)
T PLN02183 383 LLHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLY 462 (516)
T ss_pred eeeeccCceeECCEEECCCCEEEEehhhhcCCccccCCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHH
Confidence 45899999999999999999999999999999999999999999999975432 12245689999999999999999999
Q ss_pred HHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeecc
Q 036114 83 LIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYT 132 (134)
Q Consensus 83 ~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 132 (134)
|+++++|.|+++|+++..++...+.++.....+.+..+..++.+.+++|.
T Consensus 463 e~~l~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 512 (516)
T PLN02183 463 ALDLAVAHLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYRL 512 (516)
T ss_pred HHHHHHHHHHheeEEEcCCCCCCCCCChhhccccccccCCCcEEEeecCC
Confidence 99999999999999998776432234433334555455668888888874
No 9
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.98 E-value=4.3e-32 Score=210.19 Aligned_cols=131 Identities=43% Similarity=0.869 Sum_probs=108.9
Q ss_pred cccceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcC----CCCCCccccccCCCCCCCccH
Q 036114 2 LLVPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSID----FKGQNYELIPFGVGRRACPGI 77 (134)
Q Consensus 2 ~~~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~----~~~~~~~~~~Fg~G~r~C~G~ 77 (134)
+.++|.+.+|++++|+.||+|+.|.++.|++||||++|+||++|+||||++++.. ....+..++|||.|+|.|+|+
T Consensus 375 ~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~ 454 (517)
T PLN02687 375 LSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGL 454 (517)
T ss_pred ccccccCCCCeeECCEEECCCCEEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCCh
Confidence 3478999999999999999999999999999999999999999999999975321 112355799999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeecc
Q 036114 78 NFAIPLIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYT 132 (134)
Q Consensus 78 ~~a~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 132 (134)
+||++|+++++|.|+++|++++.++...+.++......+++.+..++.+++++|.
T Consensus 455 ~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 509 (517)
T PLN02687 455 SWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVHPRPRL 509 (517)
T ss_pred HHHHHHHHHHHHHHHHhcceecCCCCCcccCCcccccceeeecCCCeEEeeccCC
Confidence 9999999999999999999998766432233333344566667778999998884
No 10
>PLN02966 cytochrome P450 83A1
Probab=99.98 E-value=4.1e-32 Score=209.59 Aligned_cols=127 Identities=46% Similarity=0.924 Sum_probs=104.0
Q ss_pred ccceecCCCceEecEEeCCCCEEEechhhhccCcCCC-CCCCccCCCCcCCCCcCCCCCCccccccCCCCCCCccHHHHH
Q 036114 3 LVPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYW-EHPFEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGINFAI 81 (134)
Q Consensus 3 ~~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~-~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~ 81 (134)
.++|.+.+|++++||.|||||.|.++.|++||||++| ++|++|+||||++++.+....+..++|||.|+|.|+|++||+
T Consensus 370 ~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~ 449 (502)
T PLN02966 370 LIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGA 449 (502)
T ss_pred ccCcccCCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHH
Confidence 4679999999999999999999999999999999999 999999999999754322234568999999999999999999
Q ss_pred HHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEe
Q 036114 82 PLIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMAT 129 (134)
Q Consensus 82 ~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 129 (134)
+|+++++|.|+++|++++.++...+.++.....+++..++..+.+..+
T Consensus 450 ~el~~~la~ll~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (502)
T PLN02966 450 AMLEVPYANLLLNFNFKLPNGMKPDDINMDVMTGLAMHKSQHLKLVPE 497 (502)
T ss_pred HHHHHHHHHHHHhceeeCCCCCCcccCCcccccCeeeccCCCeEEEEE
Confidence 999999999999999998876543344444445665544445554443
No 11
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.98 E-value=4e-32 Score=209.89 Aligned_cols=128 Identities=45% Similarity=0.848 Sum_probs=108.0
Q ss_pred cccceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcCCC---CCCccccccCCCCCCCccHH
Q 036114 2 LLVPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSIDFK---GQNYELIPFGVGRRACPGIN 78 (134)
Q Consensus 2 ~~~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~~~---~~~~~~~~Fg~G~r~C~G~~ 78 (134)
+.++|.+.+|++++||.||||+.|.++.|++|+||++|+||++|+||||++++.... .....++|||.|+|.|+|++
T Consensus 367 ~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~ 446 (504)
T PLN00110 367 LNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTR 446 (504)
T ss_pred cccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHH
Confidence 347899999999999999999999999999999999999999999999996532111 12357999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeecc
Q 036114 79 FAIPLIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYT 132 (134)
Q Consensus 79 ~a~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 132 (134)
||++|+++++|.|+++|++++.++. ..+.....++++.+..++.+.+++|.
T Consensus 447 ~A~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r~ 497 (504)
T PLN00110 447 MGIVLVEYILGTLVHSFDWKLPDGV---ELNMDEAFGLALQKAVPLSAMVTPRL 497 (504)
T ss_pred HHHHHHHHHHHHHHHhceeecCCCC---ccCcccccccccccCCCceEeeccCC
Confidence 9999999999999999999987653 23333345677788889999999884
No 12
>PTZ00404 cytochrome P450; Provisional
Probab=99.98 E-value=5.8e-32 Score=207.70 Aligned_cols=121 Identities=31% Similarity=0.566 Sum_probs=103.1
Q ss_pred cccceecCCCceE-ecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcCCCCCCccccccCCCCCCCccHHHH
Q 036114 2 LLVPRETTEDCRI-GEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGINFA 80 (134)
Q Consensus 2 ~~~~R~~~~d~~l-~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a 80 (134)
+.++|.+.+|+++ +||.||||+.|.++.+++||||++|+||++|+||||++.. .+..++|||.|+|.|+|+++|
T Consensus 361 ~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~-----~~~~~~pFg~G~R~C~G~~~A 435 (482)
T PTZ00404 361 FGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD-----SNDAFMPFSIGPRNCVGQQFA 435 (482)
T ss_pred cccceeccCCEEecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCCCC-----CCCceeccCCCCCCCccHHHH
Confidence 3468999999999 9999999999999999999999999999999999998642 356899999999999999999
Q ss_pred HHHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeec
Q 036114 81 IPLIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAY 131 (134)
Q Consensus 81 ~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R 131 (134)
++|++++++.|+++|+++..++. +.......++++. +.++.+.+++|
T Consensus 436 ~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~-~~~~~v~~~~R 482 (482)
T PTZ00404 436 QDELYLAFSNIILNFKLKSIDGK---KIDETEEYGLTLK-PNKFKVLLEKR 482 (482)
T ss_pred HHHHHHHHHHHHHhcEEecCCCC---CCCcccccceeec-CCCceeeeecC
Confidence 99999999999999999986543 2222223456666 45788888876
No 13
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.98 E-value=7.2e-32 Score=208.32 Aligned_cols=123 Identities=19% Similarity=0.428 Sum_probs=102.8
Q ss_pred cceecCCCce-EecEEeCCCCEEEechhhhccCcCCC-CCCCccCCCCcCCCCcCCC-CCCccccccCCCCCCCccHHHH
Q 036114 4 VPRETTEDCR-IGEYEIPSGTRVLINAKAIATDPEYW-EHPFEFRPERFLNSSIDFK-GQNYELIPFGVGRRACPGINFA 80 (134)
Q Consensus 4 ~~R~~~~d~~-l~g~~ip~g~~v~~~~~~~~~~~~~~-~~p~~F~P~R~~~~~~~~~-~~~~~~~~Fg~G~r~C~G~~~a 80 (134)
+.|.+.+|.+ ++|+.||||+.|.++.|++||||++| +||++|+||||++++.... ..+..|+|||+|+|.|+|++||
T Consensus 374 ~~r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A 453 (500)
T PLN02169 374 NHKAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLA 453 (500)
T ss_pred CceecCCCCCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHH
Confidence 4566666655 59999999999999999999999999 8999999999997543221 2367899999999999999999
Q ss_pred HHHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeec
Q 036114 81 IPLIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAY 131 (134)
Q Consensus 81 ~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R 131 (134)
++|++++++.|+++|++++.++.. + .....+++.+++++.+++++|
T Consensus 454 ~~e~k~~la~ll~~f~~~~~~~~~---~--~~~~~~~l~~~~gl~l~l~~~ 499 (500)
T PLN02169 454 LLQMKIVALEIIKNYDFKVIEGHK---I--EAIPSILLRMKHGLKVTVTKK 499 (500)
T ss_pred HHHHHHHHHHHHHHCEEEEcCCCC---c--ccccceEEecCCCEEEEEEeC
Confidence 999999999999999999875431 2 223457788999999999887
No 14
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.97 E-value=5.5e-32 Score=203.16 Aligned_cols=103 Identities=44% Similarity=0.791 Sum_probs=91.1
Q ss_pred cccceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcCCCCCCccccccCCCCCCCccHHHHH
Q 036114 2 LLVPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGINFAI 81 (134)
Q Consensus 2 ~~~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~ 81 (134)
+.++|.+.+|++++||.||||+.|.++.+++|+||++|+||++|+||||++.+.........++|||.|+|.|+|+++|+
T Consensus 340 ~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~ 419 (463)
T PF00067_consen 340 FSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERGISNRPSFAFLPFGAGPRMCPGRNLAM 419 (463)
T ss_dssp TEEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTSTBCSSSTTSSTTESSTTS-TTHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchHHHHHH
Confidence 35789999999999999999999999999999999999999999999999876422346778999999999999999999
Q ss_pred HHHHHHHHHHHHhCceecCCCCC
Q 036114 82 PLIELALASLLYSFDWELPPGMR 104 (134)
Q Consensus 82 ~~~~~~la~ll~~f~~~~~~~~~ 104 (134)
+|+++++|.|+++|++++.++..
T Consensus 420 ~~~~~~la~ll~~f~~~~~~~~~ 442 (463)
T PF00067_consen 420 MEMKVFLAKLLRRFDFELVPGSE 442 (463)
T ss_dssp HHHHHHHHHHHHHEEEEESTTSS
T ss_pred HHHHHHHHHHHHhCEEEECCCCC
Confidence 99999999999999999976553
No 15
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.97 E-value=2.1e-31 Score=206.08 Aligned_cols=132 Identities=36% Similarity=0.717 Sum_probs=109.6
Q ss_pred cccceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcC---C-CCCCccccccCCCCCCCccH
Q 036114 2 LLVPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSID---F-KGQNYELIPFGVGRRACPGI 77 (134)
Q Consensus 2 ~~~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~---~-~~~~~~~~~Fg~G~r~C~G~ 77 (134)
+.++|.+.+|++++|+.||||+.|.++.|++||||++|+||++|+||||..+... . ...+..++|||.|+|.|+|+
T Consensus 374 ~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~ 453 (514)
T PLN03112 374 FLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGA 453 (514)
T ss_pred cccccccCCCeeEcCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcH
Confidence 3468999999999999999999999999999999999999999999998653211 1 12345799999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeeccC
Q 036114 78 NFAIPLIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYTS 133 (134)
Q Consensus 78 ~~a~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~~ 133 (134)
++|++|++++++.|+++|++++..+...+.++.....++.+.+.+++.+.+++|..
T Consensus 454 ~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 509 (514)
T PLN03112 454 PLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAVATPRLA 509 (514)
T ss_pred HHHHHHHHHHHHHHHHheeeecCCCCCcccCCCccccCcccccCCCeEEEeecCCc
Confidence 99999999999999999999987654323344444456666778899999999964
No 16
>PLN02655 ent-kaurene oxidase
Probab=99.97 E-value=2.1e-31 Score=204.05 Aligned_cols=127 Identities=35% Similarity=0.619 Sum_probs=108.5
Q ss_pred cccceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcCCCCCCccccccCCCCCCCccHHHHH
Q 036114 2 LLVPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGINFAI 81 (134)
Q Consensus 2 ~~~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~ 81 (134)
+.++|.+.+|++++||.||||+.|+++.+++|||+++|+||++|+||||++++... .....++|||+|+|.|+|++||.
T Consensus 339 ~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~~-~~~~~~~~Fg~G~r~C~G~~~A~ 417 (466)
T PLN02655 339 LLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYES-ADMYKTMAFGAGKRVCAGSLQAM 417 (466)
T ss_pred CCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCCccc-CCcccccCCCCCCCCCCcHHHHH
Confidence 34579999999999999999999999999999999999999999999999754221 23468999999999999999999
Q ss_pred HHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeeccC
Q 036114 82 PLIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYTS 133 (134)
Q Consensus 82 ~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~~ 133 (134)
.+++++++.|+++|++++.++.. + .....++++.++.++.+++.+|.+
T Consensus 418 ~~~~~~l~~ll~~f~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~r~~ 465 (466)
T PLN02655 418 LIACMAIARLVQEFEWRLREGDE-E---KEDTVQLTTQKLHPLHAHLKPRGS 465 (466)
T ss_pred HHHHHHHHHHHHHeEEEeCCCCc-c---ccchhheeEeecCCcEEEEeecCC
Confidence 99999999999999999876542 1 122446777788899999999875
No 17
>PLN02500 cytochrome P450 90B1
Probab=99.97 E-value=2.2e-31 Score=204.96 Aligned_cols=120 Identities=27% Similarity=0.467 Sum_probs=99.0
Q ss_pred cceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcCCC------CCCccccccCCCCCCCccH
Q 036114 4 VPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSIDFK------GQNYELIPFGVGRRACPGI 77 (134)
Q Consensus 4 ~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~~~------~~~~~~~~Fg~G~r~C~G~ 77 (134)
++|.+.+|++++||.||||+.|.++.|++||||++|+||++|+||||++++.... ..+..++|||.|+|.|+|+
T Consensus 363 ~~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~ 442 (490)
T PLN02500 363 LHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGS 442 (490)
T ss_pred eeeEeCCCceeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcH
Confidence 5799999999999999999999999999999999999999999999997542111 1356899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEee
Q 036114 78 NFAIPLIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATA 130 (134)
Q Consensus 78 ~~a~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 130 (134)
++|++|+++++|.|+++|++++.++.. .. . .. .. .+..++.|++++
T Consensus 443 ~~A~~el~~~la~ll~~f~~~~~~~~~--~~--~-~~-~~-~~~~~l~~~~~~ 488 (490)
T PLN02500 443 ELAKLEMAVFIHHLVLNFNWELAEADQ--AF--A-FP-FV-DFPKGLPIRVRR 488 (490)
T ss_pred HHHHHHHHHHHHHHHhccEEEEcCCCc--ce--e-cc-cc-cCCCCceEEEEe
Confidence 999999999999999999999876542 11 1 11 22 334588888764
No 18
>PLN03018 homomethionine N-hydroxylase
Probab=99.97 E-value=8.2e-31 Score=203.81 Aligned_cols=128 Identities=23% Similarity=0.530 Sum_probs=105.0
Q ss_pred cccceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcCC-----CCCCccccccCCCCCCCcc
Q 036114 2 LLVPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSIDF-----KGQNYELIPFGVGRRACPG 76 (134)
Q Consensus 2 ~~~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~~-----~~~~~~~~~Fg~G~r~C~G 76 (134)
+..+|.+.+|++++||.||||+.|.++.|++|+||++|++|++|+||||++++... ...+..++|||.|+|.|+|
T Consensus 392 ~~~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G 471 (534)
T PLN03018 392 YVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVG 471 (534)
T ss_pred ccCCcccCCCeeECCEEECCCCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCcc
Confidence 34578999999999999999999999999999999999999999999999654211 1245689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeecc
Q 036114 77 INFAIPLIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYT 132 (134)
Q Consensus 77 ~~~a~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 132 (134)
+++|.+|++++++.|+++|++++.++.. .++.....+++.. +.++.+.+++|.
T Consensus 472 ~~lA~~e~~~~la~ll~~f~~~~~~~~~--~~~~~~~~~~~~~-p~~~~v~~~~R~ 524 (534)
T PLN03018 472 VKVGTIMMVMMLARFLQGFNWKLHQDFG--PLSLEEDDASLLM-AKPLLLSVEPRL 524 (534)
T ss_pred HHHHHHHHHHHHHHHHHhceEEeCCCCC--CCCccccccceec-CCCeEEEEEecc
Confidence 9999999999999999999999866531 2333323344444 459999999984
No 19
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.97 E-value=3.3e-31 Score=202.30 Aligned_cols=119 Identities=29% Similarity=0.470 Sum_probs=104.6
Q ss_pred ccceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcCCCCCCccccccCCCCCCCccHHHHHH
Q 036114 3 LVPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGINFAIP 82 (134)
Q Consensus 3 ~~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~ 82 (134)
+++|.+.+|++++||.||||+.|.++.+++|+|+++|+||++|+||||++++. .+..++|||+|+|.|+|+++|.+
T Consensus 333 ~~~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~----~~~~~~pFG~G~R~C~G~~lA~~ 408 (452)
T PLN03141 333 GVMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDM----NNSSFTPFGGGQRLCPGLDLARL 408 (452)
T ss_pred CcceeecCCeeECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCCC----CCCCCCCCCCCCCCCChHHHHHH
Confidence 56899999999999999999999999999999999999999999999997532 35689999999999999999999
Q ss_pred HHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeeccC
Q 036114 83 LIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYTS 133 (134)
Q Consensus 83 ~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~~ 133 (134)
|+++++|.|+++|++++.++.. . ...++.+..++.+.+++|-.
T Consensus 409 el~~~la~ll~~f~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~ 451 (452)
T PLN03141 409 EASIFLHHLVTRFRWVAEEDTI---V-----NFPTVRMKRKLPIWVTRIDD 451 (452)
T ss_pred HHHHHHHHHHhcCeeecCCCCe---e-----ecccccCCCCceEEEEeCCC
Confidence 9999999999999999865431 1 12467788899999999843
No 20
>PLN02738 carotene beta-ring hydroxylase
Probab=99.97 E-value=6.5e-31 Score=207.49 Aligned_cols=126 Identities=30% Similarity=0.497 Sum_probs=106.4
Q ss_pred cceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCc--CCCCCCccccccCCCCCCCccHHHHH
Q 036114 4 VPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSI--DFKGQNYELIPFGVGRRACPGINFAI 81 (134)
Q Consensus 4 ~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~--~~~~~~~~~~~Fg~G~r~C~G~~~a~ 81 (134)
++|++.+|++++||.|||||.|.++.|.+||||++|+||++|+||||+.++. .....+..++|||.|+|.|+|++||+
T Consensus 469 ~~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~ 548 (633)
T PLN02738 469 LIRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFAS 548 (633)
T ss_pred cceeeccCceECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHHHHH
Confidence 5688999999999999999999999999999999999999999999985321 11234568999999999999999999
Q ss_pred HHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeeccC
Q 036114 82 PLIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYTS 133 (134)
Q Consensus 82 ~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~~ 133 (134)
+|+++++|.|+++|+|++..+.. +. ....+.++.+..++.+++++|+.
T Consensus 549 ~El~l~LA~Llr~F~~el~~~~~--~~--~~~~~~~~~p~~~l~v~l~~R~~ 596 (633)
T PLN02738 549 FENVVATAMLVRRFDFQLAPGAP--PV--KMTTGATIHTTEGLKMTVTRRTK 596 (633)
T ss_pred HHHHHHHHHHHHhCeeEeCCCCC--Cc--ccccceEEeeCCCcEEEEEECCC
Confidence 99999999999999999876542 22 22235667778899999999864
No 21
>PLN02290 cytokinin trans-hydroxylase
Probab=99.97 E-value=4.6e-31 Score=204.25 Aligned_cols=122 Identities=29% Similarity=0.524 Sum_probs=105.2
Q ss_pred ccceecCCCceEecEEeCCCCEEEechhhhccCcCCC-CCCCccCCCCcCCCCcCCCCCCccccccCCCCCCCccHHHHH
Q 036114 3 LVPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYW-EHPFEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGINFAI 81 (134)
Q Consensus 3 ~~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~-~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~ 81 (134)
.++|.+.+|++++||.||||+.|.++.|++||||++| +||++|+||||++.+. .....++|||.|+|.|+|+++|+
T Consensus 393 ~~~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~---~~~~~~~pFG~G~R~C~G~~lA~ 469 (516)
T PLN02290 393 LLPRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPF---APGRHFIPFAAGPRNCIGQAFAM 469 (516)
T ss_pred ccceeecCCeeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCCC---CCCCeEecCCCCCCCCccHHHHH
Confidence 3689999999999999999999999999999999999 8999999999995421 13457999999999999999999
Q ss_pred HHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeecc
Q 036114 82 PLIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYT 132 (134)
Q Consensus 82 ~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 132 (134)
+|++++++.|+++|++++.++.. ......+++.|.+++.+++++|.
T Consensus 470 ~el~l~la~ll~~f~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~~ 515 (516)
T PLN02290 470 MEAKIILAMLISKFSFTISDNYR-----HAPVVVLTIKPKYGVQVCLKPLN 515 (516)
T ss_pred HHHHHHHHHHHHhceEeeCCCcc-----cCccceeeecCCCCCeEEEEeCC
Confidence 99999999999999999876531 11123577888999999999885
No 22
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.97 E-value=8.8e-31 Score=202.39 Aligned_cols=128 Identities=23% Similarity=0.320 Sum_probs=106.0
Q ss_pred cceecCCCceE-ecEEeCCCCEEEechhhhccCcCCC-CCCCccCCCCcCCCCcCCCCCCccccccCCCCCCCccHHHHH
Q 036114 4 VPRETTEDCRI-GEYEIPSGTRVLINAKAIATDPEYW-EHPFEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGINFAI 81 (134)
Q Consensus 4 ~~R~~~~d~~l-~g~~ip~g~~v~~~~~~~~~~~~~~-~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~ 81 (134)
..|.+.+|.++ +|+.||||+.|.++.|++|||+++| +||++|+||||++++......+..++|||+|+|.|+|+++|+
T Consensus 373 ~~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~ 452 (502)
T PLN02426 373 DSKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYPVFQAGLRVCLGKEMAL 452 (502)
T ss_pred cceeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcccCCCCCCCCCCccHHHHH
Confidence 35888888787 9999999999999999999999999 999999999999743211224567999999999999999999
Q ss_pred HHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeeccCC
Q 036114 82 PLIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYTST 134 (134)
Q Consensus 82 ~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~~~ 134 (134)
+|++++++.|+++|++++..+.. . ......++++.+++++.+++++|..+
T Consensus 453 ~e~~~~la~ll~~f~~~~~~~~~--~-~~~~~~~~~~~~~~gl~v~~~~r~~~ 502 (502)
T PLN02426 453 MEMKSVAVAVVRRFDIEVVGRSN--R-APRFAPGLTATVRGGLPVRVRERVRT 502 (502)
T ss_pred HHHHHHHHHHHHHceEEEecCCC--C-CCcccceeEEecCCCEEEEEEEccCC
Confidence 99999999999999999864321 1 12223457788899999999998654
No 23
>PLN02774 brassinosteroid-6-oxidase
Probab=99.97 E-value=1.4e-30 Score=199.47 Aligned_cols=118 Identities=29% Similarity=0.524 Sum_probs=99.3
Q ss_pred ccceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcCCCCCCccccccCCCCCCCccHHHHHH
Q 036114 3 LVPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGINFAIP 82 (134)
Q Consensus 3 ~~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~ 82 (134)
.+.|.+.+|++++||.||||+.|+++.+++||||++|+||++|+||||++++. . ....++|||+|+|.|+|+++|.+
T Consensus 345 ~~~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~--~-~~~~~lpFG~G~r~C~G~~~A~~ 421 (463)
T PLN02774 345 GVLRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSL--E-SHNYFFLFGGGTRLCPGKELGIV 421 (463)
T ss_pred CcccccCCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCc--C-CCccccCcCCCCCcCCcHHHHHH
Confidence 46799999999999999999999999999999999999999999999996532 1 12369999999999999999999
Q ss_pred HHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEee
Q 036114 83 LIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATA 130 (134)
Q Consensus 83 ~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 130 (134)
|++++++.|+++|++++.++.. . .... ++.|++++.+++++
T Consensus 422 e~~~~la~Ll~~f~~~~~~~~~---~--~~~~--~~~p~~g~~~~~~~ 462 (463)
T PLN02774 422 EISTFLHYFVTRYRWEEVGGDK---L--MKFP--RVEAPNGLHIRVSP 462 (463)
T ss_pred HHHHHHHHHHHhceEEECCCCc---c--ccCC--CCCCCCCceEEeee
Confidence 9999999999999999976542 1 1111 23367888888874
No 24
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.97 E-value=8.3e-31 Score=202.87 Aligned_cols=123 Identities=20% Similarity=0.324 Sum_probs=100.6
Q ss_pred ceecCCCceE-ecEEeCCCCEEEechhhhccCcCCC-CCCCccCCCCcCCCCcCCCCCCccccccCCCCCCCccHHHHHH
Q 036114 5 PRETTEDCRI-GEYEIPSGTRVLINAKAIATDPEYW-EHPFEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGINFAIP 82 (134)
Q Consensus 5 ~R~~~~d~~l-~g~~ip~g~~v~~~~~~~~~~~~~~-~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~ 82 (134)
+|.+.+|.++ +|+.||||+.|.++.|++||||++| +||++|+||||++++......+..++|||+|+|.|+|++||++
T Consensus 392 ~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~ 471 (516)
T PLN03195 392 PKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYL 471 (516)
T ss_pred hhhhccCcCcCCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHH
Confidence 4556666665 9999999999999999999999999 9999999999996432112245679999999999999999999
Q ss_pred HHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeecc
Q 036114 83 LIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYT 132 (134)
Q Consensus 83 ~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 132 (134)
|++++++.|+++|++++.++. +. ......++.+..++.|++++|.
T Consensus 472 e~~~~la~ll~~f~~~~~~~~---~~--~~~~~~~~~~~~~~~v~~~~r~ 516 (516)
T PLN03195 472 QMKMALALLCRFFKFQLVPGH---PV--KYRMMTILSMANGLKVTVSRRS 516 (516)
T ss_pred HHHHHHHHHHHhceeEecCCC---cc--eeeeeeEEecCCCEEEEEEeCC
Confidence 999999999999999986543 12 2223345678889999998874
No 25
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.97 E-value=3.7e-30 Score=197.75 Aligned_cols=120 Identities=29% Similarity=0.414 Sum_probs=103.3
Q ss_pred cceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcCCCCCCccccccCCCCCCCccHHHHHHH
Q 036114 4 VPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGINFAIPL 83 (134)
Q Consensus 4 ~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~ 83 (134)
.+|.+.+|++++||.||||+.|.++.+++|||+++|+||++|+||||++.+ ..+..++|||+|+|.|+|+++|.+|
T Consensus 370 ~~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~----~~~~~~~pFG~G~r~C~G~~lA~~e 445 (490)
T PLN02302 370 VFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYT----PKAGTFLPFGLGSRLCPGNDLAKLE 445 (490)
T ss_pred chhcccCCEeECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCC----CCCCCccCCCCCCcCCCcHHHHHHH
Confidence 468899999999999999999999999999999999999999999999643 2456899999999999999999999
Q ss_pred HHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeeccC
Q 036114 84 IELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYTS 133 (134)
Q Consensus 84 ~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~~ 133 (134)
++++++.|+++|++++.++.. +.. ....+.|..++.+++++|.+
T Consensus 446 ~~~~la~ll~~f~~~~~~~~~----~~~--~~~~~~p~~~~~~~~~~~~~ 489 (490)
T PLN02302 446 ISIFLHHFLLGYRLERLNPGC----KVM--YLPHPRPKDNCLARITKVAS 489 (490)
T ss_pred HHHHHHHHHhcCeeEEcCCCC----cce--eCCCCCCCCCceEEEEeccC
Confidence 999999999999999875421 111 11236778899999998876
No 26
>PLN02936 epsilon-ring hydroxylase
Probab=99.97 E-value=7.4e-30 Score=196.62 Aligned_cols=126 Identities=33% Similarity=0.542 Sum_probs=104.0
Q ss_pred cccceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcC--CCCCCccccccCCCCCCCccHHH
Q 036114 2 LLVPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSID--FKGQNYELIPFGVGRRACPGINF 79 (134)
Q Consensus 2 ~~~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~ 79 (134)
+.+.|.+.+|+.++|+.||+|+.|.++.+++||||++|+||++|+||||+.++.. ....+..++|||.|+|.|+|+++
T Consensus 355 ~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~l 434 (489)
T PLN02936 355 VLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQF 434 (489)
T ss_pred cccceeccCccccCCeEECCCCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHH
Confidence 4556666778888999999999999999999999999999999999999964321 12234589999999999999999
Q ss_pred HHHHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeecc
Q 036114 80 AIPLIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYT 132 (134)
Q Consensus 80 a~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 132 (134)
|++|++++++.|+++|+++++++.. +.. ..++++.+..++.|++++|.
T Consensus 435 a~~~~~~~la~ll~~f~~~~~~~~~---~~~--~~~~~~~~~~~~~v~~~~R~ 482 (489)
T PLN02936 435 ALLEAIVALAVLLQRLDLELVPDQD---IVM--TTGATIHTTNGLYMTVSRRR 482 (489)
T ss_pred HHHHHHHHHHHHHHhCeEEecCCCc---cce--ecceEEeeCCCeEEEEEeee
Confidence 9999999999999999999876532 222 23456667789999998885
No 27
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.96 E-value=8.5e-30 Score=195.66 Aligned_cols=122 Identities=24% Similarity=0.361 Sum_probs=104.6
Q ss_pred ccceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcCCCCCCccccccCCCCCCCccHHHHHH
Q 036114 3 LVPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGINFAIP 82 (134)
Q Consensus 3 ~~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~ 82 (134)
.++|.+.+|++++||.||||+.|.++.+++|+|+++|++|++|+||||++++.. ......++|||+|+|.|+|+++|.+
T Consensus 348 ~~~R~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~-~~~~~~~l~FG~G~r~C~G~~lA~~ 426 (472)
T PLN02987 348 GIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGT-TVPSNVFTPFGGGPRLCPGYELARV 426 (472)
T ss_pred CccccCCCCeeECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCCC-CCCCcceECCCCCCcCCCcHHHHHH
Confidence 357999999999999999999999999999999999999999999999975422 1234679999999999999999999
Q ss_pred HHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeecc
Q 036114 83 LIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYT 132 (134)
Q Consensus 83 ~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 132 (134)
|++++++.|+++|++++.++.. + . ...++.|..++.+++++|-
T Consensus 427 e~~~~la~ll~~f~~~~~~~~~---~--~--~~~~~~p~~~~~~~~~~r~ 469 (472)
T PLN02987 427 ALSVFLHRLVTRFSWVPAEQDK---L--V--FFPTTRTQKRYPINVKRRD 469 (472)
T ss_pred HHHHHHHHHHhceEEEECCCCc---e--e--ecccccCCCCceEEEEecc
Confidence 9999999999999999875532 1 1 1347788888999998873
No 28
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=9.1e-30 Score=192.66 Aligned_cols=124 Identities=27% Similarity=0.394 Sum_probs=111.0
Q ss_pred ccceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcCCCCCCccccccCCCCCCCccHHHHHH
Q 036114 3 LVPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGINFAIP 82 (134)
Q Consensus 3 ~~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~ 82 (134)
+..|+..+|.+|+||.|||||.|.++.+.+.+||++|++|++|+||||++++. ...+++.++|||.|+|+|+|+++|++
T Consensus 395 ~~~R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~-~~~~pF~~LPFGfG~R~C~GRRiAEl 473 (519)
T KOG0159|consen 395 GNGRVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPERWLKPST-KTIHPFASLPFGFGPRMCLGRRIAEL 473 (519)
T ss_pred ccccccchhceeccceecCCCeEEEeehhhccChhhCCCccccChhhhccccc-CCCCCceecCCCCCccccchHHHHHH
Confidence 56799999999999999999999999999999999999999999999998762 34578999999999999999999999
Q ss_pred HHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeecc
Q 036114 83 LIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYT 132 (134)
Q Consensus 83 ~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 132 (134)
||-+.||.|+++|+++..... ++.....+++.|..++.+.+++|.
T Consensus 474 El~llLarllr~f~V~~~~~~-----pv~~~~~~il~P~~~l~f~f~~r~ 518 (519)
T KOG0159|consen 474 ELHLLLARLLRNFKVEFLHEE-----PVEYVYRFILVPNRPLRFKFRPRN 518 (519)
T ss_pred HHHHHHHHHHHhcceeecCCC-----CccceeEEEEcCCCCcceeeeeCC
Confidence 999999999999999987643 234456677889999999999885
No 29
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.96 E-value=1.2e-29 Score=194.28 Aligned_cols=117 Identities=25% Similarity=0.414 Sum_probs=99.4
Q ss_pred cceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcCCCCCCccccccCCCCCCCccHHHHHHH
Q 036114 4 VPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGINFAIPL 83 (134)
Q Consensus 4 ~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~ 83 (134)
+.|.+.+|++++||.||||+.|.++.+++|+|+++|++|++|+||||+++. .+..++|||.|+|.|+|+++|++|
T Consensus 346 ~~R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~-----~~~~~lpFG~G~r~C~G~~~A~~e 420 (463)
T PLN02196 346 TFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP-----KPNTFMPFGNGTHSCPGNELAKLE 420 (463)
T ss_pred cceeeccccccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCC-----CCCcccCcCCCCCCCchHHHHHHH
Confidence 458999999999999999999999999999999999999999999999632 356899999999999999999999
Q ss_pred HHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeec
Q 036114 84 IELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAY 131 (134)
Q Consensus 84 ~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R 131 (134)
++++++.|+++|++++.+++. +.. ...+..|+.++.++++..
T Consensus 421 ~~~~la~ll~~f~~~~~~~~~----~~~--~~~~~~p~~~~~~~~~~~ 462 (463)
T PLN02196 421 ISVLIHHLTTKYRWSIVGTSN----GIQ--YGPFALPQNGLPIALSRK 462 (463)
T ss_pred HHHHHHHHHHhcEEEEcCCCC----ceE--EcccccCCCCceEEEecC
Confidence 999999999999999876532 121 222345777888887643
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=5.7e-27 Score=174.70 Aligned_cols=126 Identities=31% Similarity=0.550 Sum_probs=106.1
Q ss_pred ccceecCCCceEec----EEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcCC--CCC--CccccccCCCCCCC
Q 036114 3 LVPRETTEDCRIGE----YEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSIDF--KGQ--NYELIPFGVGRRAC 74 (134)
Q Consensus 3 ~~~R~~~~d~~l~g----~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~~--~~~--~~~~~~Fg~G~r~C 74 (134)
.+.|.+.+|.++.+ |.||+|..|.++...+|+||++|++|+.|+|+||++++.+. .+. ++.++|||+|.+.|
T Consensus 352 ~~~R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~C 431 (486)
T KOG0684|consen 352 SLMRKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRC 431 (486)
T ss_pred hHHHhhccceeeccCCcceecCCCCEEEeccccccCCccccCChhhCChhhccCCCcccccccccccccccccCCCcCCC
Confidence 45689999999976 99999999999999999999999999999999999876543 122 33469999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHhCceecCCCCCCCCCCCCCCCCeeeccCCcEEEEEeecc
Q 036114 75 PGINFAIPLIELALASLLYSFDWELPPGMRIEDFDMEEAPGITMHKKTLLFLMATAYT 132 (134)
Q Consensus 75 ~G~~~a~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R~ 132 (134)
||+.||.+|++.++..+|+.||+++.++. ..+++. ..+++.|.++++++-+.|.
T Consensus 432 pGr~FA~~eIk~~~~l~L~~fdleLid~~-~P~~d~---s~~v~~P~g~v~irYK~R~ 485 (486)
T KOG0684|consen 432 PGRSFAYLEIKQFISLLLRHFDLELIDGP-FPEVDY---SRMVMQPEGDVRIRYKRRP 485 (486)
T ss_pred CchHHHHHHHHHHHHHHHHHcceeecCCC-CCCCCH---HHhhcCCCCCceEEEeecC
Confidence 99999999999999999999999999862 233333 2347788999999888774
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=4.4e-26 Score=172.59 Aligned_cols=89 Identities=42% Similarity=0.644 Sum_probs=84.3
Q ss_pred cceecCCCceEecEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcCCCCCCccccccCCCCCCCccHHHHHHH
Q 036114 4 VPRETTEDCRIGEYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGINFAIPL 83 (134)
Q Consensus 4 ~~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~ 83 (134)
+.|.+.+|++++|+.||||+.|++++++.||||++|++|++|+|+||. ..++|||+|+|.|+|.+||++|
T Consensus 299 ~~R~~~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~----------~~~l~FG~G~H~ClG~~lA~~E 368 (411)
T COG2124 299 ARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN----------NAHLPFGGGPHRCLGAALARLE 368 (411)
T ss_pred cceeccCCEeeCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC----------CCCcCCCCCCccccCHHHHHHH
Confidence 678899999999999999999999999999999999999999999996 4789999999999999999999
Q ss_pred HHHHHHHHHHhCceecCCC
Q 036114 84 IELALASLLYSFDWELPPG 102 (134)
Q Consensus 84 ~~~~la~ll~~f~~~~~~~ 102 (134)
++++++.++++|++....+
T Consensus 369 ~~~~l~~ll~r~~~~~~~~ 387 (411)
T COG2124 369 LKVALAELLRRFPLLLLAE 387 (411)
T ss_pred HHHHHHHHHHhCchhhcCC
Confidence 9999999999999877654
No 32
>PLN02648 allene oxide synthase
Probab=99.91 E-value=3.4e-24 Score=164.95 Aligned_cols=97 Identities=25% Similarity=0.505 Sum_probs=82.7
Q ss_pred cceecCCCceEe----cEEeCCCCEEEechhhhccCcCCCCCCCccCCCCcCCCCcCCCCCCcccccc---------CCC
Q 036114 4 VPRETTEDCRIG----EYEIPSGTRVLINAKAIATDPEYWEHPFEFRPERFLNSSIDFKGQNYELIPF---------GVG 70 (134)
Q Consensus 4 ~~R~~~~d~~l~----g~~ip~g~~v~~~~~~~~~~~~~~~~p~~F~P~R~~~~~~~~~~~~~~~~~F---------g~G 70 (134)
+.|++.+|++++ ||.||||+.|+++.+.+||||++|+||++|+|+||++++.. ....+++| |+|
T Consensus 353 ~~r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~---~~~~~~~f~~g~~~~~~G~G 429 (480)
T PLN02648 353 QYGRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGE---KLLKYVFWSNGRETESPTVG 429 (480)
T ss_pred ccceecCCEEEecCCceEEECCCCEEEEChHHHhCCcccCCCcceeCCCCCCCCCcc---ccccccccCCCcccCCCCCC
Confidence 457889999996 79999999999999999999999999999999999864321 11233333 677
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHhCc-eecCCCC
Q 036114 71 RRACPGINFAIPLIELALASLLYSFD-WELPPGM 103 (134)
Q Consensus 71 ~r~C~G~~~a~~~~~~~la~ll~~f~-~~~~~~~ 103 (134)
+|.|+|++||++|++++++.|+++|+ +++.++.
T Consensus 430 ~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~~ 463 (480)
T PLN02648 430 NKQCAGKDFVVLVARLFVAELFLRYDSFEIEVDT 463 (480)
T ss_pred CccCccHHHHHHHHHHHHHHHHHHhCEEeecCCc
Confidence 89999999999999999999999998 9987664
No 33
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=76.86 E-value=2.7 Score=29.30 Aligned_cols=20 Identities=40% Similarity=0.479 Sum_probs=17.3
Q ss_pred cCCCceEecEEeCCCCEEEe
Q 036114 8 TTEDCRIGEYEIPSGTRVLI 27 (134)
Q Consensus 8 ~~~d~~l~g~~ip~g~~v~~ 27 (134)
..+|+.++|..||||+.+.-
T Consensus 75 Lle~i~i~g~~IPkgt~l~G 94 (200)
T PF12508_consen 75 LLEDIQIGGILIPKGTYLYG 94 (200)
T ss_pred EcCceEECCEEeCCCCEEEE
Confidence 46889999999999998864
No 34
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=71.35 E-value=3 Score=23.16 Aligned_cols=8 Identities=50% Similarity=0.933 Sum_probs=6.2
Q ss_pred CCCCcCCC
Q 036114 46 RPERFLNS 53 (134)
Q Consensus 46 ~P~R~~~~ 53 (134)
||||||.-
T Consensus 44 DPERWLP~ 51 (59)
T PF08492_consen 44 DPERWLPK 51 (59)
T ss_pred CccccCch
Confidence 78999853
No 35
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=66.57 E-value=5 Score=26.28 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=16.7
Q ss_pred CCccHHHHHHHHHHHHHHHHHhC
Q 036114 73 ACPGINFAIPLIELALASLLYSF 95 (134)
Q Consensus 73 ~C~G~~~a~~~~~~~la~ll~~f 95 (134)
.|.|+.||+.++-.+++.|+..-
T Consensus 19 N~~gKKFsE~QiN~FIs~lItsP 41 (148)
T PF09201_consen 19 NCLGKKFSETQINAFISHLITSP 41 (148)
T ss_dssp ETTS----HHHHHHHHHHHHHS-
T ss_pred cccchHHHHHHHHHHHHHHhcCC
Confidence 69999999999999999999763
No 36
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=51.50 E-value=14 Score=28.69 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=17.1
Q ss_pred cCCCceEecEEeCCCCEEEe
Q 036114 8 TTEDCRIGEYEIPSGTRVLI 27 (134)
Q Consensus 8 ~~~d~~l~g~~ip~g~~v~~ 27 (134)
..+|+.++|..|||||.|+-
T Consensus 278 Lle~~~v~~~~ipkgt~l~g 297 (410)
T TIGR03779 278 LLEPIQAGDLVIPKGTVLYG 297 (410)
T ss_pred EcCceeeCCEEecCCCEEEE
Confidence 46789999999999998864
No 37
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=47.80 E-value=5.1 Score=27.31 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=25.2
Q ss_pred CccCCCCcCCCCcCCCCCCccccccCCCCCCCccHH
Q 036114 43 FEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGIN 78 (134)
Q Consensus 43 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~ 78 (134)
.+|+|++|-.-=-....+..+.+-|..|+-.|-|..
T Consensus 35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence 468888885321122335667899999999999864
No 38
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=47.76 E-value=12 Score=25.49 Aligned_cols=56 Identities=16% Similarity=0.337 Sum_probs=32.3
Q ss_pred CccCCCCcCCCCcCCCCCCccccccCCCCCCCccH-HHHHHH-HHHHHHHHHHhCcee
Q 036114 43 FEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGI-NFAIPL-IELALASLLYSFDWE 98 (134)
Q Consensus 43 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~-~~a~~~-~~~~la~ll~~f~~~ 98 (134)
.+|+|++|-.---....+....+-|+.|+-.|.|. ...... ..--++.+|++..+.
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~i~~~L~~~g~~ 86 (174)
T cd04516 29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGAKSEDDSKLAARKYARIIQKLGFP 86 (174)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCC
Confidence 68999988432111223445678899999999983 332211 223334556666543
No 39
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=46.24 E-value=15 Score=23.59 Aligned_cols=21 Identities=43% Similarity=0.520 Sum_probs=17.0
Q ss_pred ecCCCceEecEEeCCCCEEEe
Q 036114 7 ETTEDCRIGEYEIPSGTRVLI 27 (134)
Q Consensus 7 ~~~~d~~l~g~~ip~g~~v~~ 27 (134)
.+..|..+.|-.||+|+.|+.
T Consensus 72 I~~~d~~~~g~~i~~GtWv~~ 92 (122)
T PF14550_consen 72 IAPEDMEIGGETIPKGTWVVG 92 (122)
T ss_pred ecCCCcccCCeeecceEEEEE
Confidence 345688899999999999853
No 40
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=45.42 E-value=9 Score=18.00 Aligned_cols=6 Identities=83% Similarity=1.641 Sum_probs=3.7
Q ss_pred cCCCCc
Q 036114 45 FRPERF 50 (134)
Q Consensus 45 F~P~R~ 50 (134)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 456765
No 41
>PLN00062 TATA-box-binding protein; Provisional
Probab=43.55 E-value=19 Score=24.67 Aligned_cols=55 Identities=18% Similarity=0.380 Sum_probs=32.6
Q ss_pred CccCCCCcCCCCcCCCCCCccccccCCCCCCCccH-HHHHH-HHHHHHHHHHHhCce
Q 036114 43 FEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGI-NFAIP-LIELALASLLYSFDW 97 (134)
Q Consensus 43 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~-~~a~~-~~~~~la~ll~~f~~ 97 (134)
.+|+||+|-.---....+....+-|+.|+-.|-|. ..... ...--++.+|++..+
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~~~~~L~~lg~ 85 (179)
T PLN00062 29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHDSKLAARKYARIIQKLGF 85 (179)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCC
Confidence 58999988432111223445788999999999985 33222 123334455666554
No 42
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=43.33 E-value=23 Score=23.43 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=16.1
Q ss_pred CCCceEecEEeCCCCEEEe
Q 036114 9 TEDCRIGEYEIPSGTRVLI 27 (134)
Q Consensus 9 ~~d~~l~g~~ip~g~~v~~ 27 (134)
.+|+.++|..||+|+.-+.
T Consensus 53 ~~dv~igGk~l~AG~Ysl~ 71 (145)
T PF11138_consen 53 SKDVTIGGKKLKAGTYSLF 71 (145)
T ss_pred CCCeEECCEEcCCeeEEEE
Confidence 5789999999999997554
No 43
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=42.83 E-value=11 Score=17.13 Aligned_cols=6 Identities=83% Similarity=1.641 Sum_probs=3.4
Q ss_pred cCCCCc
Q 036114 45 FRPERF 50 (134)
Q Consensus 45 F~P~R~ 50 (134)
++||||
T Consensus 20 l~PErF 25 (25)
T PF09604_consen 20 LRPERF 25 (25)
T ss_pred hCcccC
Confidence 356665
No 44
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=40.21 E-value=23 Score=24.02 Aligned_cols=56 Identities=18% Similarity=0.298 Sum_probs=32.4
Q ss_pred CccCCCCcCCCCcCCCCCCccccccCCCCCCCccH-HH--HHHHHHHHHHHHHHhCceec
Q 036114 43 FEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGI-NF--AIPLIELALASLLYSFDWEL 99 (134)
Q Consensus 43 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~-~~--a~~~~~~~la~ll~~f~~~~ 99 (134)
-+|+|++|-.---....+....+-|+.|+-.|.|. .. |..-+ --++.+|+++.+..
T Consensus 29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitGaks~~~~~~a~-~~~~~~L~~~g~~~ 87 (174)
T cd00652 29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITGAKSEEDAKLAA-RKYARILQKLGFPV 87 (174)
T ss_pred cEECCCccceEEEEcCCCcEEEEEECCCEEEEEecCCHHHHHHHH-HHHHHHHHHcCCCc
Confidence 57888888432111223455778899999999983 22 22222 23344566665443
No 45
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=40.14 E-value=7.1 Score=26.56 Aligned_cols=35 Identities=20% Similarity=0.494 Sum_probs=24.2
Q ss_pred CccCCCCcCCCCcCCCCCCccccccCCCCCCCccH
Q 036114 43 FEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGI 77 (134)
Q Consensus 43 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 77 (134)
.+|+|+||-.---....+....+-|+.|+-.|.|.
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa 63 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA 63 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEcc
Confidence 57999998532112223455788899999999976
No 46
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=38.56 E-value=17 Score=21.44 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=22.8
Q ss_pred CccCCCCcCCCCcCCCCCCccccccCCCCCCCccH
Q 036114 43 FEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGI 77 (134)
Q Consensus 43 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 77 (134)
-+|+||+|-.---....+.....-|..|.-.|.|.
T Consensus 31 ~~YePe~fpgl~~r~~~p~~t~~IF~sGki~itGa 65 (86)
T PF00352_consen 31 VEYEPERFPGLIYRLRNPKATVLIFSSGKIVITGA 65 (86)
T ss_dssp EEEETTTESSEEEEETTTTEEEEEETTSEEEEEEE
T ss_pred cEEeeccCCeEEEeecCCcEEEEEEcCCEEEEEec
Confidence 47888887321111122445678899999999985
No 47
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=38.52 E-value=18 Score=25.46 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEechhhh-ccCcCCCCCCCccCCCC
Q 036114 25 VLINAKAI-ATDPEYWEHPFEFRPER 49 (134)
Q Consensus 25 v~~~~~~~-~~~~~~~~~p~~F~P~R 49 (134)
..++-|.- +.|+.+|.|.+.|+|.|
T Consensus 186 LGiPGW~~~n~~~~FY~d~~~FRp~R 211 (212)
T PF11227_consen 186 LGIPGWWPDNEDPAFYDDTDVFRPGR 211 (212)
T ss_pred cCCCCCCCCCCCcccccCccccCCCC
Confidence 34555554 88999999999999987
No 48
>PRK00394 transcription factor; Reviewed
Probab=36.33 E-value=29 Score=23.68 Aligned_cols=34 Identities=24% Similarity=0.522 Sum_probs=23.7
Q ss_pred CccCCCCcCCCCcCCCCCCccccccCCCCCCCcc
Q 036114 43 FEFRPERFLNSSIDFKGQNYELIPFGVGRRACPG 76 (134)
Q Consensus 43 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G 76 (134)
.+|+|+||-.---....+....+-|+.|+-.|.|
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG 61 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG 61 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEc
Confidence 5789998853211222345578889999999998
No 49
>PF01629 DUF22: Domain of unknown function DUF22; InterPro: IPR002572 This region is found in 1 to 3 copies in archaeal proteins whose function is unknown. It only appears in multiple copies in proteins from Archaeoglobus fulgidus.
Probab=35.33 E-value=44 Score=21.07 Aligned_cols=25 Identities=24% Similarity=0.082 Sum_probs=20.0
Q ss_pred ecEEeCCCCEEEechhhhccCcCCC
Q 036114 15 GEYEIPSGTRVLINAKAIATDPEYW 39 (134)
Q Consensus 15 ~g~~ip~g~~v~~~~~~~~~~~~~~ 39 (134)
....||++|.++.+.+.-|..-.+-
T Consensus 60 k~I~iP~~tIv~p~~~~rha~G~vi 84 (112)
T PF01629_consen 60 KKIEIPPNTIVMPCAYMRHALGSVI 84 (112)
T ss_pred EEEecCCCCEEEEchHhhccCccEE
Confidence 4578999999999999988765443
No 50
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=34.93 E-value=32 Score=20.51 Aligned_cols=20 Identities=35% Similarity=0.674 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhCceecCC
Q 036114 82 PLIELALASLLYSFDWELPP 101 (134)
Q Consensus 82 ~~~~~~la~ll~~f~~~~~~ 101 (134)
..|+-++..+|+-|||.+++
T Consensus 60 ~~IrdAVsqVLkGYDWtLVP 79 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVP 79 (84)
T ss_pred HHHHHHHHHHhccCCceeee
Confidence 45677889999999999875
No 51
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=31.50 E-value=23 Score=19.30 Aligned_cols=10 Identities=50% Similarity=1.142 Sum_probs=8.6
Q ss_pred ccCCCCCCCc
Q 036114 66 PFGVGRRACP 75 (134)
Q Consensus 66 ~Fg~G~r~C~ 75 (134)
+||-|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 6999999885
No 52
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=30.73 E-value=13 Score=17.07 Aligned_cols=7 Identities=71% Similarity=1.388 Sum_probs=4.3
Q ss_pred cCCCCcC
Q 036114 45 FRPERFL 51 (134)
Q Consensus 45 F~P~R~~ 51 (134)
++||||.
T Consensus 19 l~PErF~ 25 (26)
T TIGR02115 19 LRPERFX 25 (26)
T ss_pred hCHHhcC
Confidence 4577763
No 53
>PHA03162 hypothetical protein; Provisional
Probab=26.48 E-value=50 Score=21.43 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=18.4
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHH
Q 036114 68 GVGRRACPGINFAIPLIELALASL 91 (134)
Q Consensus 68 g~G~r~C~G~~~a~~~~~~~la~l 91 (134)
++|.+.||++...+-++..=|+.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 458899999988887776666654
No 54
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=25.00 E-value=35 Score=23.75 Aligned_cols=35 Identities=23% Similarity=0.544 Sum_probs=22.2
Q ss_pred CccCCCCcCCCCcCCCCCCccccccCCCCCCCccH
Q 036114 43 FEFRPERFLNSSIDFKGQNYELIPFGVGRRACPGI 77 (134)
Q Consensus 43 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 77 (134)
.+|+|.||-.-=-....+...-.-|++|+-.|-|.
T Consensus 50 ~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctgA 84 (200)
T KOG3302|consen 50 AEYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTGA 84 (200)
T ss_pred cccCcccccEEEEEEcCCceEEEEecCCcEEEecc
Confidence 57999998531111122344556799999999963
No 55
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=23.33 E-value=91 Score=19.79 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=16.7
Q ss_pred CCCCccHHHHHHHHHHHHHHHHH
Q 036114 71 RRACPGINFAIPLIELALASLLY 93 (134)
Q Consensus 71 ~r~C~G~~~a~~~~~~~la~ll~ 93 (134)
.|.|+|.-++......++..|-.
T Consensus 4 GH~Cpgl~~G~r~~~~a~~~l~~ 26 (131)
T PF02663_consen 4 GHLCPGLALGYRMAKYALEELGI 26 (131)
T ss_dssp SS--HHHHHHHHHHHHHHHHHTS
T ss_pred CCcCccHHHHHHHHHHHHHHcCC
Confidence 37899999999888888877643
Done!