BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036116
         (53 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PK7|A Chain A, Crystal Structure Of The Q4kft4_psef5 Protein From
          Pseudomonas Fluorescens. Nesg Target Plr1
 pdb|2PK7|B Chain B, Crystal Structure Of The Q4kft4_psef5 Protein From
          Pseudomonas Fluorescens. Nesg Target Plr1
          Length = 69

 Score = 30.0 bits (66), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 6  NSLISDSIGVSFPIKDGIPSLVPKDGKILGVDD 38
            LIS   G+++PI+DGIP  +  + + L  ++
Sbjct: 25 TELISKGAGLAYPIRDGIPVXLESEARTLTTEE 57


>pdb|2JR6|A Chain A, Solution Structure Of Upf0434 Protein Nma0874. Northeast
          Structural Genomics Target Mr32
          Length = 68

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 3  EETNSLISDSIGVSFPIKDGIPSLVPKDGKILGVDD 38
          ++   L S    +++PIKDGIP ++  + + L  ++
Sbjct: 22 QDKQELWSRQAKLAYPIKDGIPYMLENEARPLSEEE 57


>pdb|2HF1|A Chain A, Crystal Structure Of The Putative
          Tetraacyldisaccharide-1-P 4-Kinase From Chromobacterium
          Violaceum. Nesg Target Cvr39.
 pdb|2HF1|B Chain B, Crystal Structure Of The Putative
          Tetraacyldisaccharide-1-P 4-Kinase From Chromobacterium
          Violaceum. Nesg Target Cvr39
          Length = 68

 Score = 25.4 bits (54), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 6  NSLISDSIGVSFPIKDGIPSLVPKDGKILGVDDD 39
          + LI     ++FPIKDGIP  +  + + L  +++
Sbjct: 25 DELICKGDRLAFPIKDGIPXXLESEARELAPEEE 58


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.133    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,533,447
Number of Sequences: 62578
Number of extensions: 45079
Number of successful extensions: 82
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 3
length of query: 53
length of database: 14,973,337
effective HSP length: 25
effective length of query: 28
effective length of database: 13,408,887
effective search space: 375448836
effective search space used: 375448836
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)