BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036117
(641 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 160/551 (29%), Positives = 247/551 (44%), Gaps = 44/551 (7%)
Query: 108 IGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRI 167
+ L LD+SSNN + IP +G S L+ L + N L+G +S LL I
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 251
Query: 168 GANYLEDP-DPVKFKGMASLTDLWLDYNLLEKFPSFIA-ECSKLMFLDLSDNLIMGHIPI 225
+N P P+ K + L+ + + P F++ C L LDLS N G +P
Sbjct: 252 SSNQFVGPIPPLPLKSLQYLS--LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP- 308
Query: 226 EQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLK---LGQNKLTGTIPDEIGLLS-N 281
LE L L+ N+F GE+P + T K+R LK L N+ +G +P+ + LS +
Sbjct: 309 PFFGSCSLLESLALSSNNFSGELP--MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 366
Query: 282 LEILEFHENLFHG-LIPS-SXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINN 339
L L+ N F G ++P+ ++ G IP L C+ L L LS N
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 340 LTGSLPLSLASLRQISELGISNNQLSEII-----------SLQLQMNDLSGKLPPEIGLL 388
L+G++P SL SL ++ +L + N L I +L L NDL+G++P +
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXXX 448
L ++ L +N+ +G IP+ IG L NL L+L+NN F+G+IP+ +G+
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 449 XTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG-GNLIYL----TANVNKL 503
GT+P + F+ + Y G C G GNL+ + +N+L
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE--CHGAGNLLEFQGIRSEQLNRL 604
Query: 504 VGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCT 563
P C +RV G + + ++D+ N LSG + G
Sbjct: 605 STRNP-----CNITSRV------YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 564 NLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQL 623
L + N I G IP E+G+L L LD+ N+L G+IP + + L ++L N L
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 624 SDKIPAEIGKL 634
S IP E+G+
Sbjct: 714 SGPIP-EMGQF 723
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 174/608 (28%), Positives = 269/608 (44%), Gaps = 97/608 (15%)
Query: 46 NSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPXXXXXXXXXXXXV---- 101
+SN PC ++G+ C + ++ I+L++ L+ FSA
Sbjct: 31 SSNKNPCTFDGVTCRD-DKVTSIDLSSKPLN-----VGFSAVSSSLLSLTGLESLFLSNS 84
Query: 102 ---GSIPAGIGNATKLILLDLSSNNLTNPIPP--EIGYLSDLRVLLLYNNSLTGQIPHQL 156
GS+ +G + L LDLS N+L+ P+ +G S L+ L + +N+L P ++
Sbjct: 85 HINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKV 141
Query: 157 S---NLQNAWLLRIGANYLEDPDPVKF---KGMASLTDLWLDYNLLEKFPSFIAECSKLM 210
S L + +L + AN + + V + G L L + N + ++ C L
Sbjct: 142 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLE 200
Query: 211 FLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTG 270
FLD+S N IP L L++L+++ N G+ R I T +L+ L + N+ G
Sbjct: 201 FLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 258
Query: 271 TIPDEIGLLSNLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKEL-GFCAN 329
IP L +L+ L EN F G IP L G C
Sbjct: 259 PIPPLP--LKSLQYLSLAENKFTG------------------------EIPDFLSGACDT 292
Query: 330 LTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGL-L 388
LT L+LS N+ G++P S + SL L N+ SG+LP + L +
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLE-------------SLALSSNNFSGELPMDTLLKM 339
Query: 389 PKLEYLYLFDNKFSGPIPQQIGNLT-NLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXX 447
L+ L L N+FSG +P+ + NL+ +L L L++N F+G I
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI------------------ 381
Query: 448 XXTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPI 507
LP N K+ +L+N N F+GK+PP + L+ L + N L G I
Sbjct: 382 -----LPNLCQNPKNTLQELYLQN-----NGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 431
Query: 508 PESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSN 567
P SL + + L ++L N L+G+I L L+ + L N L+G + S CTNL+
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 491
Query: 568 FRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKI 627
+S NR+ G IP +G L L L + +N +G IPA+L LI L+L N + I
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 628 PAEIGKLS 635
PA + K S
Sbjct: 552 PAAMFKQS 559
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 144/491 (29%), Positives = 213/491 (43%), Gaps = 71/491 (14%)
Query: 180 FKGMASLTDLWLDYNLLE---KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
FK ASLT L L N L + + CS L FL++S N + + L +LE
Sbjct: 93 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 152
Query: 237 LNLTKNSFEGE-IPREIKT--FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFH 293
L+L+ NS G + + + +L+HL + NK++G + ++ NLE L+ N F
Sbjct: 153 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFS 210
Query: 294 GLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQ 353
IP LG C+ L L++S N L+G ++++ +
Sbjct: 211 TGIPF-------------------------LGDCSALQHLDISGNKLSGDFSRAISTCTE 245
Query: 354 ISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI-GNL 412
+ L IS+NQ G +PP L L+YL L +NKF+G IP + G
Sbjct: 246 LKLLNISSNQFV-------------GPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGAC 290
Query: 413 TNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXXXXTGTLPPE----------IGNSKS 462
L L L+ N F G++P G+ +G LP + + S +
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 463 DFG---PRFLRNVS-------FSYNNFSGKLPPGICRG--GNLIYLTANVNKLVGPIPES 510
+F P L N+S S NNFSG + P +C+ L L N G IP +
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 410
Query: 511 LWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRI 570
L NC+ L + L N L G I ++LG L+ + L N L G + L +
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 571 SGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAE 630
N + G IP+ L N T L + + +N+LTG+IP + R L L L N S IPAE
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 631 IGKLSRLQYLD 641
+G L +LD
Sbjct: 531 LGDCRSLIWLD 541
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 102 GSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQN 161
G IP IG+ L +L+L N+++ IP E+G L L +L L +N L G+IP +S L
Sbjct: 643 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Query: 162 AWLLRIGANYLEDPDP 177
+ + N L P P
Sbjct: 703 LTEIDLSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 160/551 (29%), Positives = 247/551 (44%), Gaps = 44/551 (7%)
Query: 108 IGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRI 167
+ L LD+SSNN + IP +G S L+ L + N L+G +S LL I
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254
Query: 168 GANYLEDP-DPVKFKGMASLTDLWLDYNLLEKFPSFIA-ECSKLMFLDLSDNLIMGHIPI 225
+N P P+ K + L+ + + P F++ C L LDLS N G +P
Sbjct: 255 SSNQFVGPIPPLPLKSLQYLS--LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP- 311
Query: 226 EQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLK---LGQNKLTGTIPDEIGLLS-N 281
LE L L+ N+F GE+P + T K+R LK L N+ +G +P+ + LS +
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELP--MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369
Query: 282 LEILEFHENLFHG-LIPS-SXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINN 339
L L+ N F G ++P+ ++ G IP L C+ L L LS N
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 340 LTGSLPLSLASLRQISELGISNNQLSEII-----------SLQLQMNDLSGKLPPEIGLL 388
L+G++P SL SL ++ +L + N L I +L L NDL+G++P +
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXXX 448
L ++ L +N+ +G IP+ IG L NL L+L+NN F+G+IP+ +G+
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 449 XTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG-GNLIYL----TANVNKL 503
GT+P + F+ + Y G C G GNL+ + +N+L
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE--CHGAGNLLEFQGIRSEQLNRL 607
Query: 504 VGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCT 563
P C +RV G + + ++D+ N LSG + G
Sbjct: 608 STRNP-----CNITSRV------YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 564 NLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQL 623
L + N I G IP E+G+L L LD+ N+L G+IP + + L ++L N L
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 624 SDKIPAEIGKL 634
S IP E+G+
Sbjct: 717 SGPIP-EMGQF 726
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 174/608 (28%), Positives = 269/608 (44%), Gaps = 97/608 (15%)
Query: 46 NSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPXXXXXXXXXXXXV---- 101
+SN PC ++G+ C + ++ I+L++ L+ FSA
Sbjct: 34 SSNKNPCTFDGVTCRD-DKVTSIDLSSKPLN-----VGFSAVSSSLLSLTGLESLFLSNS 87
Query: 102 ---GSIPAGIGNATKLILLDLSSNNLTNPIPP--EIGYLSDLRVLLLYNNSLTGQIPHQL 156
GS+ +G + L LDLS N+L+ P+ +G S L+ L + +N+L P ++
Sbjct: 88 HINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKV 144
Query: 157 S---NLQNAWLLRIGANYLEDPDPVKF---KGMASLTDLWLDYNLLEKFPSFIAECSKLM 210
S L + +L + AN + + V + G L L + N + ++ C L
Sbjct: 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLE 203
Query: 211 FLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTG 270
FLD+S N IP L L++L+++ N G+ R I T +L+ L + N+ G
Sbjct: 204 FLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 271 TIPDEIGLLSNLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKEL-GFCAN 329
IP L +L+ L EN F G IP L G C
Sbjct: 262 PIPPLP--LKSLQYLSLAENKFTG------------------------EIPDFLSGACDT 295
Query: 330 LTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGL-L 388
LT L+LS N+ G++P S + SL L N+ SG+LP + L +
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLE-------------SLALSSNNFSGELPMDTLLKM 342
Query: 389 PKLEYLYLFDNKFSGPIPQQIGNLT-NLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXX 447
L+ L L N+FSG +P+ + NL+ +L L L++N F+G I
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI------------------ 384
Query: 448 XXTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPI 507
LP N K+ +L+N N F+GK+PP + L+ L + N L G I
Sbjct: 385 -----LPNLCQNPKNTLQELYLQN-----NGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Query: 508 PESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSN 567
P SL + + L ++L N L+G+I L L+ + L N L+G + S CTNL+
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 568 FRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKI 627
+S NR+ G IP +G L L L + +N +G IPA+L LI L+L N + I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 628 PAEIGKLS 635
PA + K S
Sbjct: 555 PAAMFKQS 562
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 144/491 (29%), Positives = 210/491 (42%), Gaps = 71/491 (14%)
Query: 180 FKGMASLTDLWLDYNLLE---KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
FK ASLT L L N L + + CS L FL++S N + + L +LE
Sbjct: 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155
Query: 237 LNLTKNSFEGE-IPREIKT--FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFH 293
L+L+ NS G + + + +L+HL + NK++G + ++ NLE L+ N F
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFS 213
Query: 294 GLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQ 353
IP LG C+ L L++S N L+G ++++ +
Sbjct: 214 TGIPF-------------------------LGDCSALQHLDISGNKLSGDFSRAISTCTE 248
Query: 354 ISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI-GNL 412
+ L IS+NQ G +PP L L+YL L +NKF+G IP + G
Sbjct: 249 LKLLNISSNQFV-------------GPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGAC 293
Query: 413 TNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXXXXTGTLPPEI-------------GN 459
L L L+ N F G++P G+ +G LP + N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 460 SKSDFGPRFLRNVS-------FSYNNFSGKLPPGICRG--GNLIYLTANVNKLVGPIPES 510
S P L N+S S NNFSG + P +C+ L L N G IP +
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Query: 511 LWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRI 570
L NC+ L + L N L G I ++LG L+ + L N L G + L +
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Query: 571 SGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAE 630
N + G IP+ L N T L + + +N+LTG+IP + R L L L N S IPAE
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 631 IGKLSRLQYLD 641
+G L +LD
Sbjct: 534 LGDCRSLIWLD 544
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 102 GSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQN 161
G IP IG+ L +L+L N+++ IP E+G L L +L L +N L G+IP +S L
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 162 AWLLRIGANYLEDPDP 177
+ + N L P P
Sbjct: 706 LTEIDLSNNNLSGPIP 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 119/272 (43%), Gaps = 42/272 (15%)
Query: 376 DLSG-------KLPPEIGLLPKLEYLYLFD-NKFSGPIPQQIGNLTNLFDLQLANNFFNG 427
DLSG +P + LP L +LY+ N GPIP I LT L L + + +G
Sbjct: 56 DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115
Query: 428 SIPSTIGNXXXXXXXXXXXXXXTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGI 487
+IP + + L + FSYN SG LPP I
Sbjct: 116 AIPDFLSQI------------------------------KTLVTLDFSYNALSGTLPPSI 145
Query: 488 CRGGNLIYLTANVNKLVGPIPESLWNCTGL-TRVRLEQNRLDGDITNALGIYPDLQYIDL 546
NL+ +T + N++ G IP+S + + L T + + +NRL G I +L ++DL
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDL 204
Query: 547 GDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQ 606
N L G + +G N ++ N + + ++G L LD+ +N++ G +P
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 607 LFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQ 638
L + FL LN+ N L +IP + G L R
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFD 294
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 102/232 (43%), Gaps = 33/232 (14%)
Query: 374 MNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTI 433
+N+L G +PP I L +L YLY+ SG IP + + L L + N +G++P +I
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 434 GNXXXXXXXXXXXXXXTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNL 493
+LP +G ++F N SG +P L
Sbjct: 146 -----------------SSLPNLVG-------------ITFDGNRISGAIPDSYGSFSKL 175
Query: 494 IY-LTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLS 552
+T + N+L G IP + N L V L +N L+GD + G + Q I L N L+
Sbjct: 176 FTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 553 GVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIP 604
L G NL+ + NRI G +P L L +L +L++ N L G+IP
Sbjct: 235 FDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 6/197 (3%)
Query: 104 IPAGIGNATKLILLDLSS-NNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNA 162
IP+ + N L L + NNL PIPP I L+ L L + + +++G IP LS ++
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 163 WLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE-KFPSFIAECSKLMF-LDLSDNLIM 220
L N L P + +L + D N + P SKL + +S N +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 221 GHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLS 280
G IP +L NL +++L++N EG+ + + + L +N L + ++GL
Sbjct: 188 GKIP-PTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSK 244
Query: 281 NLEILEFHENLFHGLIP 297
NL L+ N +G +P
Sbjct: 245 NLNGLDLRNNRIYGTLP 261
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 96/233 (41%), Gaps = 18/233 (7%)
Query: 200 PSFIAECSKLMFLDLSD-NLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKL 258
PS +A L FL + N ++G IP + L L YL +T + G IP + L
Sbjct: 69 PSSLANLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 259 RHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAG-LN 317
L N L+GT+P I L NL + F N G IP S S L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 318 SSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDL 377
IP NL F++LS N L G + S + ++ ++ N L+ DL
Sbjct: 188 GKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF---------DL 237
Query: 378 SGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIP 430
++GL L L L +N+ G +PQ + L L L ++ N G IP
Sbjct: 238 G-----KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 27/174 (15%)
Query: 102 GSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDL--------RV------------- 140
G+IP + L+ LD S N L+ +PP I L +L R+
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 141 ----LLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLL 196
+ + N LTG+IP +NL N + + N LE V F + + L N L
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 197 EKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPR 250
+ L LDL +N I G +P + LT L+ L LN++ N+ GEIP+
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 86/192 (44%), Gaps = 10/192 (5%)
Query: 103 SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN---SLTGQIPHQLSNL 159
+IP+ I TK LDL SN L++ L+ LR+L L +N +L I +L NL
Sbjct: 30 AIPSNIPADTKK--LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 160 QNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAEC-SKLMFLDLSDNL 218
+ W + N L+ F + +L +L LD N L+ P + + +KL +L L N
Sbjct: 88 ETLW---VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144
Query: 219 IMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGL 278
+ +P L +L+ L L N + +L+ LKL N+L
Sbjct: 145 LQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203
Query: 279 LSNLEILEFHEN 290
L L++L+ EN
Sbjct: 204 LEKLKMLQLQEN 215
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Query: 483 LPPGICRG-GNLIYLTANVNKLVGPIPESLWN-CTGLTRVRLEQNRLDGDITNALGIYPD 540
LP GI + NL L NKL +P +++ L +RL++N+L
Sbjct: 76 LPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134
Query: 541 LQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT 600
L Y+ LG N+L + + K T+L R+ N++K LT L+ L + +NQL
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Query: 601 GKIPAQLFRS 610
++P F S
Sbjct: 195 -RVPEGAFDS 203
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 501 NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYID---LGDNQLSGVLTS 557
NKL ++ T L + L N+L T GI+ +L+ ++ + DN+L +
Sbjct: 47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWVTDNKLQALPIG 103
Query: 558 NWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLF-RSSFLIRL 616
+ + NL+ R+ N++K P +LT L L + N+L +P +F + + L L
Sbjct: 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKEL 162
Query: 617 NLRRNQLSDKIPAEIGKLSRLQYL 640
L NQL KL+ L+ L
Sbjct: 163 RLYNNQLKRVPEGAFDKLTELKTL 186
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 70/180 (38%), Gaps = 19/180 (10%)
Query: 235 EYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEI-GLLSNLEILEFHENLFH 293
+ L+L N + KLR L L NKL T+P I L NLE L +N
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 294 GLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSL-ASLR 352
L L S P+ LT+L L N L SLP + L
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLT 157
Query: 353 QISELGISNNQ-----------LSEIISLQLQMNDLSGKLPPEIGL--LPKLEYLYLFDN 399
+ EL + NNQ L+E+ +L+L N L K PE L KL+ L L +N
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL--KRVPEGAFDSLEKLKMLQLQEN 215
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 71/197 (36%), Gaps = 30/197 (15%)
Query: 358 GISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFD 417
I +N ++ L LQ N LS L KL LYL DNK L NL
Sbjct: 30 AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89
Query: 418 LQLANNFFNGSIPSTIGNXXXXXXXXXXXXXXTGTLPPEIGNSKSDFGPRFLRNVSFSYN 477
L + +N ++P + + +LPP + +S + L +S YN
Sbjct: 90 LWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK-----LTYLSLGYN 143
Query: 478 NFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGI 537
LP G+ +KL T L +RL N+L A
Sbjct: 144 ELQS-LPKGV------------FDKL-----------TSLKELRLYNNQLKRVPEGAFDK 179
Query: 538 YPDLQYIDLGDNQLSGV 554
+L+ + L +NQL V
Sbjct: 180 LTELKTLKLDNNQLKRV 196
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 138/319 (43%), Gaps = 52/319 (16%)
Query: 326 FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI 385
+ NLT + S N LT PL +L ++ ++ ++NNQ+++I L + +L+G
Sbjct: 61 YLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLA-NLTNLTG------ 111
Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXX 445
L LF+N+ + P + NLTNL L+L++N I + G
Sbjct: 112 --------LTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDISALSG----------- 149
Query: 446 XXXXTGTLPPEIGNSKSDFGP----RFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVN 501
T GN +D P L + S N S + + NL L A N
Sbjct: 150 ---LTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 204
Query: 502 KLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGK 561
++ P L T L + L N+L DI L +L +DL +NQ+S + +
Sbjct: 205 QISDITP--LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNL--APLSG 258
Query: 562 CTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRN 621
T L+ ++ N+I P L LT L NL++ +NQL P ++ L L L N
Sbjct: 259 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFN 314
Query: 622 QLSDKIPAEIGKLSRLQYL 640
+SD P + L++LQ L
Sbjct: 315 NISDISP--VSSLTKLQRL 331
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 125/316 (39%), Gaps = 64/316 (20%)
Query: 108 IGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRI 167
+ N TKL+ + +++N + + P + L++L L L+NN +T P L NL N L +
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 168 GANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQ 227
+N + D G+ SL L + + P +A + L LD+S N + I
Sbjct: 137 SSNTISDIS--ALSGLTSLQQLNFGNQVTDLKP--LANLTTLERLDISSNKVSD---ISV 189
Query: 228 LTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT--GTIPDEIGLLSNLEIL 285
L L NLE L T N P I T L L L N+L GT+ L+NL L
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIGTLAS----LTNLTDL 243
Query: 286 EFHENLFHGLIPSSXXXXXXXXXXXXKS-------AGLNSSIPKEL-----------GFC 327
+ N L P S AGL + EL
Sbjct: 244 DLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 303
Query: 328 ANLTFLELSINNLTGSLPLS--------------------LASLRQISELGISNNQLSEI 367
NLT+L L NN++ P+S LA+L I+ L +NQ+S++
Sbjct: 304 KNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL 363
Query: 368 ISL-------QLQMND 376
L QL +ND
Sbjct: 364 TPLANLTRITQLGLND 379
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 138/334 (41%), Gaps = 91/334 (27%)
Query: 107 GIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLR 166
G+ L ++ S+N LT+ P + L+ L +L+ NN + P L+NL N L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 113
Query: 167 IGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGH--IP 224
+ N + D DP+K +LT+L N LE + I++ S L L L G+
Sbjct: 114 LFNNQITDIDPLK-----NLTNL----NRLELSSNTISDISALSGLTSLQQLNFGNQVTD 164
Query: 225 IEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLK---LGQNKLTGTIPDEIGLLSN 281
++ L +L LE L+++ N +I KL +L+ N+++ P +G+L+N
Sbjct: 165 LKPLANLTTLERLDISSNKVS-----DISVLAKLTNLESLIATNNQISDITP--LGILTN 217
Query: 282 LEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLT 341
L+ L + N K++G
Sbjct: 218 LDELSLNGNQL-----------------------------KDIG---------------- 232
Query: 342 GSLPLSLASLRQISELGISNNQLS---------EIISLQLQMNDLSGKLPPEIGLLPKLE 392
+LASL +++L ++NNQ+S ++ L+L N +S P + L L
Sbjct: 233 -----TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALT 285
Query: 393 YLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN 426
L L +N+ P I NL NL L L +FN
Sbjct: 286 NLELNENQLEDISP--ISNLKNLTYLTL---YFN 314
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 26/221 (11%)
Query: 220 MGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLL 279
+G I+ + +L NL +N + N P +K KL + + N++ P + L
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 106
Query: 280 SNLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLE-LSIN 338
+NL L N + P L+S+ ++ + LT L+ L+
Sbjct: 107 TNLTGLTLFNNQITDIDP-------LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFG 159
Query: 339 NLTGSLPLSLASLRQISELGISNNQLSEII---------SLQLQMNDLSGKLPPEIGLLP 389
N L LA+L + L IS+N++S+I SL N +S P +G+L
Sbjct: 160 NQVTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILT 216
Query: 390 KLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIP 430
L+ L L N+ + +LTNL DL LANN + P
Sbjct: 217 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 255
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 540 DLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQL 599
+L I+ +NQL+ + + T L + ++ N+I P L NLT L L +F+NQ+
Sbjct: 64 NLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 600 TGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
T P L + L RL L N +SD + + L+ LQ L+
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLN 157
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 138/319 (43%), Gaps = 52/319 (16%)
Query: 326 FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI 385
+ NLT + S N LT PL +L ++ ++ ++NNQ+++I L + +L+G
Sbjct: 61 YLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLA-NLTNLTG------ 111
Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXX 445
L LF+N+ + P + NLTNL L+L++N I + G
Sbjct: 112 --------LTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDISALSG----------- 149
Query: 446 XXXXTGTLPPEIGNSKSDFGP----RFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVN 501
T GN +D P L + S N S + + NL L A N
Sbjct: 150 ---LTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 204
Query: 502 KLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGK 561
++ P L T L + L N+L DI L +L +DL +NQ+S + +
Sbjct: 205 QISDITP--LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNL--APLSG 258
Query: 562 CTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRN 621
T L+ ++ N+I P L LT L NL++ +NQL P ++ L L L N
Sbjct: 259 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFN 314
Query: 622 QLSDKIPAEIGKLSRLQYL 640
+SD P + L++LQ L
Sbjct: 315 NISDISP--VSSLTKLQRL 331
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 125/316 (39%), Gaps = 64/316 (20%)
Query: 108 IGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRI 167
+ N TKL+ + +++N + + P + L++L L L+NN +T P L NL N L +
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 168 GANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQ 227
+N + D G+ SL L + + P +A + L LD+S N + I
Sbjct: 137 SSNTISDIS--ALSGLTSLQQLNFGNQVTDLKP--LANLTTLERLDISSNKVSD---ISV 189
Query: 228 LTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT--GTIPDEIGLLSNLEIL 285
L L NLE L T N P I T L L L N+L GT+ L+NL L
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIGTLAS----LTNLTDL 243
Query: 286 EFHENLFHGLIPSSXXXXXXXXXXXXKS-------AGLNSSIPKEL-----------GFC 327
+ N L P S AGL + EL
Sbjct: 244 DLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 303
Query: 328 ANLTFLELSINNLTGSLPLS--------------------LASLRQISELGISNNQLSEI 367
NLT+L L NN++ P+S LA+L I+ L +NQ+S++
Sbjct: 304 KNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDL 363
Query: 368 ISL-------QLQMND 376
L QL +ND
Sbjct: 364 TPLANLTRITQLGLND 379
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 136/343 (39%), Gaps = 42/343 (12%)
Query: 220 MGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLL 279
+G I+ + +L NL +N + N P +K KL + + N++ P + L
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 106
Query: 280 SNLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLE-LSIN 338
+NL L N + P L+S+ ++ + LT L+ L+
Sbjct: 107 TNLTGLTLFNNQITDIDP-------LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFG 159
Query: 339 NLTGSLPLSLASLRQISELGISNNQLSEII---------SLQLQMNDLSGKLPPEIGLLP 389
N L LA+L + L IS+N++S+I SL N +S P +G+L
Sbjct: 160 NQVTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILT 216
Query: 390 KLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXXXX 449
L+ L L N+ + +LTNL DL LANN I N
Sbjct: 217 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANN--------QISNLAPLSGLTKLTELK 266
Query: 450 TGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPE 509
G +I N G L N+ + N P I NL YLT N + P
Sbjct: 267 LG--ANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 322
Query: 510 SLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLS 552
S + T L R+ N++ D++ +L ++ ++ G NQ+S
Sbjct: 323 S--SLTKLQRLFFSNNKV-SDVS-SLANLTNINWLSAGHNQIS 361
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 138/334 (41%), Gaps = 91/334 (27%)
Query: 107 GIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLR 166
G+ L ++ S+N LT+ P + L+ L +L+ NN + P L+NL N L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 113
Query: 167 IGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGH--IP 224
+ N + D DP+K +LT+L N LE + I++ S L L L G+
Sbjct: 114 LFNNQITDIDPLK-----NLTNL----NRLELSSNTISDISALSGLTSLQQLNFGNQVTD 164
Query: 225 IEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLK---LGQNKLTGTIPDEIGLLSN 281
++ L +L LE L+++ N +I KL +L+ N+++ P +G+L+N
Sbjct: 165 LKPLANLTTLERLDISSNKVS-----DISVLAKLTNLESLIATNNQISDITP--LGILTN 217
Query: 282 LEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLT 341
L+ L + N K++G
Sbjct: 218 LDELSLNGNQL-----------------------------KDIG---------------- 232
Query: 342 GSLPLSLASLRQISELGISNNQLS---------EIISLQLQMNDLSGKLPPEIGLLPKLE 392
+LASL +++L ++NNQ+S ++ L+L N +S P + L L
Sbjct: 233 -----TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALT 285
Query: 393 YLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN 426
L L +N+ P I NL NL L L +FN
Sbjct: 286 NLELNENQLEDISP--ISNLKNLTYLTL---YFN 314
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 540 DLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQL 599
+L I+ +NQL+ + + T L + ++ N+I P L NLT L L +F+NQ+
Sbjct: 64 NLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 600 TGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
T P L + L RL L N +SD I A G L+ LQ L+
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNTISD-ISALSG-LTSLQQLN 157
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 7/198 (3%)
Query: 101 VGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQ 160
+ SIP+G+ A K LDLS+N +T ++ +L+ L+L +N + S+L
Sbjct: 43 LNSIPSGLTEAVKS--LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100
Query: 161 NAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKF--PSFIAECSKLMFLDLSDNL 218
+ L + NYL + FK ++SLT L L N + S + +KL L + +
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160
Query: 219 IMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGL 278
I + L LE L + + + P+ +K+ + HL L + + + +
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220
Query: 279 LSNLEILEFHE---NLFH 293
S++E LE + + FH
Sbjct: 221 TSSVECLELRDTDLDTFH 238
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 138/319 (43%), Gaps = 52/319 (16%)
Query: 326 FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI 385
+ NLT + S N LT PL +L ++ ++ ++NNQ+++I L + +L+G
Sbjct: 66 YLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLA-NLTNLTG------ 116
Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXX 445
L LF+N+ + P + NLTNL L+L++N I + G
Sbjct: 117 --------LTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDISALSG----------- 154
Query: 446 XXXXTGTLPPEIGNSKSDFGP----RFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVN 501
T GN +D P L + S N S + + NL L A N
Sbjct: 155 ---LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 209
Query: 502 KLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGK 561
++ P L T L + L N+L DI L +L +DL +NQ+S + +
Sbjct: 210 QISDITP--LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNL--APLSG 263
Query: 562 CTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRN 621
T L+ ++ N+I P L LT L NL++ +NQL P ++ L L L N
Sbjct: 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFN 319
Query: 622 QLSDKIPAEIGKLSRLQYL 640
+SD P + L++LQ L
Sbjct: 320 NISDISP--VSSLTKLQRL 336
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 125/316 (39%), Gaps = 64/316 (20%)
Query: 108 IGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRI 167
+ N TKL+ + +++N + + P + L++L L L+NN +T P L NL N L +
Sbjct: 86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 141
Query: 168 GANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQ 227
+N + D G+ SL L + + P +A + L LD+S N + I
Sbjct: 142 SSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSD---ISV 194
Query: 228 LTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT--GTIPDEIGLLSNLEIL 285
L L NLE L T N P I T L L L N+L GT+ L+NL L
Sbjct: 195 LAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIGTLAS----LTNLTDL 248
Query: 286 EFHENLFHGLIPSSXXXXXXXXXXXXKS-------AGLNSSIPKEL-----------GFC 327
+ N L P S AGL + EL
Sbjct: 249 DLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 308
Query: 328 ANLTFLELSINNLTGSLPLS--------------------LASLRQISELGISNNQLSEI 367
NLT+L L NN++ P+S LA+L I+ L +NQ+S++
Sbjct: 309 KNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL 368
Query: 368 ISL-------QLQMND 376
L QL +ND
Sbjct: 369 TPLANLTRITQLGLND 384
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 93/221 (42%), Gaps = 26/221 (11%)
Query: 220 MGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLL 279
+G I+ + +L NL +N + N P +K KL + + N++ P + L
Sbjct: 56 LGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 111
Query: 280 SNLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLE-LSIN 338
+NL L N + P L+S+ ++ + LT L+ LS
Sbjct: 112 TNLTGLTLFNNQITDIDP-------LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 164
Query: 339 NLTGSLPLSLASLRQISELGISNNQLSEII---------SLQLQMNDLSGKLPPEIGLLP 389
N L LA+L + L IS+N++S+I SL N +S P +G+L
Sbjct: 165 NQVTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILT 221
Query: 390 KLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIP 430
L+ L L N+ + +LTNL DL LANN + P
Sbjct: 222 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 260
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 138/334 (41%), Gaps = 91/334 (27%)
Query: 107 GIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLR 166
G+ L ++ S+N LT+ P + L+ L +L+ NN + P L+NL N L
Sbjct: 63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118
Query: 167 IGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGH--IP 224
+ N + D DP+K +LT+L N LE + I++ S L L L G+
Sbjct: 119 LFNNQITDIDPLK-----NLTNL----NRLELSSNTISDISALSGLTSLQQLSFGNQVTD 169
Query: 225 IEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLK---LGQNKLTGTIPDEIGLLSN 281
++ L +L LE L+++ N +I KL +L+ N+++ P +G+L+N
Sbjct: 170 LKPLANLTTLERLDISSNKVS-----DISVLAKLTNLESLIATNNQISDITP--LGILTN 222
Query: 282 LEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLT 341
L+ L + N K++G
Sbjct: 223 LDELSLNGNQL-----------------------------KDIG---------------- 237
Query: 342 GSLPLSLASLRQISELGISNNQLS---------EIISLQLQMNDLSGKLPPEIGLLPKLE 392
+LASL +++L ++NNQ+S ++ L+L N +S P + L L
Sbjct: 238 -----TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALT 290
Query: 393 YLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN 426
L L +N+ P I NL NL L L +FN
Sbjct: 291 NLELNENQLEDISP--ISNLKNLTYLTL---YFN 319
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 520 VRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGI 579
L+ +RL + + +L I+ +NQL+ + + T L + ++ N+I
Sbjct: 49 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADIT 106
Query: 580 PAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQY 639
P L NLT L L +F+NQ+T P L + L RL L N +SD + + L+ LQ
Sbjct: 107 P--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQ 160
Query: 640 L 640
L
Sbjct: 161 L 161
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 9/164 (5%)
Query: 481 GKLPPGICRGGNLIY--LTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIY 538
G L P I N+ Y + ++K+ IP S N + L N L + + +
Sbjct: 2 GSLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKN------IDLSFNPLKILKSYSFSNF 55
Query: 539 PDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQ 598
+LQ++DL ++ + W +LSN ++GN I+ P LT L+NL + +
Sbjct: 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115
Query: 599 LTGKIPAQLFRSSFLIRLNLRRNQL-SDKIPAEIGKLSRLQYLD 641
L + + L +LN+ N + S K+PA L+ L ++D
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 138/319 (43%), Gaps = 52/319 (16%)
Query: 326 FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI 385
+ NLT + S N LT PL +L ++ ++ ++NNQ+++I L + +L+G
Sbjct: 65 YLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLA-NLTNLTG------ 115
Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXX 445
L LF+N+ + P + NLTNL L+L++N I + G
Sbjct: 116 --------LTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDISALSG----------- 153
Query: 446 XXXXTGTLPPEIGNSKSDFGP----RFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVN 501
T GN +D P L + S N S + + NL L A N
Sbjct: 154 ---LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 208
Query: 502 KLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGK 561
++ P L T L + L N+L DI L +L +DL +NQ+S + +
Sbjct: 209 QISDITP--LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNL--APLSG 262
Query: 562 CTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRN 621
T L+ ++ N+I P L LT L NL++ +NQL P ++ L L L N
Sbjct: 263 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFN 318
Query: 622 QLSDKIPAEIGKLSRLQYL 640
+SD P + L++LQ L
Sbjct: 319 NISDISP--VSSLTKLQRL 335
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 125/316 (39%), Gaps = 64/316 (20%)
Query: 108 IGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRI 167
+ N TKL+ + +++N + + P + L++L L L+NN +T P L NL N L +
Sbjct: 85 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 140
Query: 168 GANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQ 227
+N + D G+ SL L + + P +A + L LD+S N + I
Sbjct: 141 SSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSD---ISV 193
Query: 228 LTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT--GTIPDEIGLLSNLEIL 285
L L NLE L T N P I T L L L N+L GT+ L+NL L
Sbjct: 194 LAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIGTLAS----LTNLTDL 247
Query: 286 EFHENLFHGLIPSSXXXXXXXXXXXXKS-------AGLNSSIPKEL-----------GFC 327
+ N L P S AGL + EL
Sbjct: 248 DLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 307
Query: 328 ANLTFLELSINNLTGSLPLS--------------------LASLRQISELGISNNQLSEI 367
NLT+L L NN++ P+S LA+L I+ L +NQ+S++
Sbjct: 308 KNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDL 367
Query: 368 ISL-------QLQMND 376
L QL +ND
Sbjct: 368 TPLANLTRITQLGLND 383
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 136/343 (39%), Gaps = 42/343 (12%)
Query: 220 MGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLL 279
+G I+ + +L NL +N + N P +K KL + + N++ P + L
Sbjct: 55 LGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 110
Query: 280 SNLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLE-LSIN 338
+NL L N + P L+S+ ++ + LT L+ LS
Sbjct: 111 TNLTGLTLFNNQITDIDP-------LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 163
Query: 339 NLTGSLPLSLASLRQISELGISNNQLSEII---------SLQLQMNDLSGKLPPEIGLLP 389
N L LA+L + L IS+N++S+I SL N +S P +G+L
Sbjct: 164 NQVTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILT 220
Query: 390 KLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXXXX 449
L+ L L N+ + +LTNL DL LANN I N
Sbjct: 221 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANN--------QISNLAPLSGLTKLTELK 270
Query: 450 TGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPE 509
G +I N G L N+ + N P I NL YLT N + P
Sbjct: 271 LG--ANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 326
Query: 510 SLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLS 552
S + T L R+ N++ D++ +L ++ ++ G NQ+S
Sbjct: 327 S--SLTKLQRLFFANNKV-SDVS-SLANLTNINWLSAGHNQIS 365
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 138/334 (41%), Gaps = 91/334 (27%)
Query: 107 GIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLR 166
G+ L ++ S+N LT+ P + L+ L +L+ NN + P L+NL N L
Sbjct: 62 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 117
Query: 167 IGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGH--IP 224
+ N + D DP+K +LT+L N LE + I++ S L L L G+
Sbjct: 118 LFNNQITDIDPLK-----NLTNL----NRLELSSNTISDISALSGLTSLQQLSFGNQVTD 168
Query: 225 IEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLK---LGQNKLTGTIPDEIGLLSN 281
++ L +L LE L+++ N +I KL +L+ N+++ P +G+L+N
Sbjct: 169 LKPLANLTTLERLDISSNKVS-----DISVLAKLTNLESLIATNNQISDITP--LGILTN 221
Query: 282 LEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLT 341
L+ L + N K++G
Sbjct: 222 LDELSLNGNQL-----------------------------KDIG---------------- 236
Query: 342 GSLPLSLASLRQISELGISNNQLS---------EIISLQLQMNDLSGKLPPEIGLLPKLE 392
+LASL +++L ++NNQ+S ++ L+L N +S P + L L
Sbjct: 237 -----TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALT 289
Query: 393 YLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN 426
L L +N+ P I NL NL L L +FN
Sbjct: 290 NLELNENQLEDISP--ISNLKNLTYLTL---YFN 318
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 520 VRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGI 579
L+ +RL + + +L I+ +NQL+ + + T L + ++ N+I
Sbjct: 48 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADIT 105
Query: 580 PAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQY 639
P L NLT L L +F+NQ+T P L + L RL L N +SD + + L+ LQ
Sbjct: 106 P--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQ 159
Query: 640 L 640
L
Sbjct: 160 L 160
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 7/198 (3%)
Query: 101 VGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQ 160
+ SIP+G+ A K LDLS+N +T ++ +L+ L+L +N + S+L
Sbjct: 17 LNSIPSGLTEAVKS--LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 74
Query: 161 NAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKF--PSFIAECSKLMFLDLSDNL 218
+ L + NYL + FK ++SLT L L N + S + +KL L + +
Sbjct: 75 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 134
Query: 219 IMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGL 278
I + L LE L + + + P+ +K+ + HL L + + + +
Sbjct: 135 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 194
Query: 279 LSNLEILEFHE---NLFH 293
S++E LE + + FH
Sbjct: 195 TSSVECLELRDTDLDTFH 212
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 103/266 (38%), Gaps = 75/266 (28%)
Query: 188 DLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGE 247
DL Y+L E+ E SK+ +P HL++LEYL+L++N E
Sbjct: 301 DLSTLYSLTERVKRITVENSKVFL-----------VPCLLSQHLKSLEYLDLSENLMVEE 349
Query: 248 IPREIK---TFPKLRHLKLGQNKLTG--TIPDEIGLLSNLEILEFHENLFHGLIPSSXXX 302
+ +P L+ L L QN L + + L NL ++ +N FH
Sbjct: 350 YLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFH--------- 400
Query: 303 XXXXXXXXXKSAGLNSSIPKELGFCANLTFLELS---INNLTGSLPLSLASLR------- 352
S+P+ + + +L LS I+++TG +P +L L
Sbjct: 401 ----------------SMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLN 444
Query: 353 -------QISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPI 405
Q+ EL IS N+L + P+ LLP L L + N+ +
Sbjct: 445 LFSLNLPQLKELYISRNKLMTL---------------PDASLLPMLLVLKISRNQLKS-V 488
Query: 406 PQQI-GNLTNLFDLQLANNFFNGSIP 430
P I LT+L + L N ++ S P
Sbjct: 489 PDGIFDRLTSLQKIWLHTNPWDCSCP 514
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 104/255 (40%), Gaps = 53/255 (20%)
Query: 188 DLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGE 247
DL Y+LLEK E SK+ +P HL++LE+L+L++N E
Sbjct: 327 DLSTVYSLLEKVKRITVENSKVFL-----------VPCSFSQHLKSLEFLDLSENLMVEE 375
Query: 248 IPREIK---TFPKLRHLKLGQNKL-----TGTIPDEIGLLSNLEILEFHENLFHGLIPSS 299
+ +P L+ L L QN L TG I + L NL L+ N FH + P S
Sbjct: 376 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI---LLTLKNLTSLDISRNTFHPM-PDS 431
Query: 300 XXXXXXXXXXXXKSAGL---NSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISE 356
S G+ + IP+ L L++S NNL S L L L+ E
Sbjct: 432 CQWPEKMRFLNLSSTGIRVVKTCIPQ------TLEVLDVSNNNL-DSFSLFLPRLQ---E 481
Query: 357 LGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI-GNLTNL 415
L IS N+L K P+ L P L + + N+ +P I LT+L
Sbjct: 482 LYISRNKL---------------KTLPDASLFPVLLVMKIASNQLKS-VPDGIFDRLTSL 525
Query: 416 FDLQLANNFFNGSIP 430
+ L N ++ S P
Sbjct: 526 QKIWLHTNPWDCSCP 540
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 514 CTGLTRVRLEQNRL---DGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRI 570
C L + L+ +R+ +GD +LG L+++DL DN LS + +S +G ++L +
Sbjct: 75 CANLQVLILKSSRINTIEGDAFYSLG---SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 131
Query: 571 SGNRIKG-GIPAELGNLTYLQNLDI 594
GN + G+ + NLT LQ L I
Sbjct: 132 MGNPYQTLGVTSLFPNLTNLQTLRI 156
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 104/255 (40%), Gaps = 53/255 (20%)
Query: 188 DLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGE 247
DL Y+LLEK E SK+ +P HL++LE+L+L++N E
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFL-----------VPCSFSQHLKSLEFLDLSENLMVEE 349
Query: 248 IPREIK---TFPKLRHLKLGQNKL-----TGTIPDEIGLLSNLEILEFHENLFHGLIPSS 299
+ +P L+ L L QN L TG I + L NL L+ N FH + P S
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI---LLTLKNLTSLDISRNTFHPM-PDS 405
Query: 300 XXXXXXXXXXXXKSAGL---NSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISE 356
S G+ + IP+ L L++S NNL S L L L+ E
Sbjct: 406 CQWPEKMRFLNLSSTGIRVVKTCIPQ------TLEVLDVSNNNL-DSFSLFLPRLQ---E 455
Query: 357 LGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI-GNLTNL 415
L IS N+L K P+ L P L + + N+ +P I LT+L
Sbjct: 456 LYISRNKL---------------KTLPDASLFPVLLVMKISRNQLKS-VPDGIFDRLTSL 499
Query: 416 FDLQLANNFFNGSIP 430
+ L N ++ S P
Sbjct: 500 QKIWLHTNPWDCSCP 514
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 483 LPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRL---DGDITNALGIYP 539
+P G+ + L+ N +G L C L + L+ +R+ +GD +LG
Sbjct: 20 IPSGLTAAMKSLDLSFNKITYIGH--GDLRACANLQVLILKSSRINTIEGDAFYSLG--- 74
Query: 540 DLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKG-GIPAELGNLTYLQNLDI 594
L+++DL DN LS + +S +G ++L + GN + G+ + NLT LQ L I
Sbjct: 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 538 YPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDN 597
+ +LQ++DL ++ + W +LSN ++GN I+ P LT L+NL +
Sbjct: 50 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 109
Query: 598 QLTGKIPAQLFRSSFLIRLNLRRNQL-SDKIPAEIGKLSRLQYLD 641
+L + + L +LN+ N + S K+PA L+ L ++D
Sbjct: 110 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 154
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 114 LILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQ-IPHQLSNLQNAWLLRIGANYL 172
LI LD+S + LS L VL + NS +P + L+N L + L
Sbjct: 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 506
Query: 173 EDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAEC-SKLMFLDLSDNLIMGHIPIEQLTHL 231
E P F ++SL L + +N +F +C + L LD S N IM ++L H
Sbjct: 507 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK-QELQHF 565
Query: 232 -ENLEYLNLTKNSF 244
+L +LNLT+N F
Sbjct: 566 PSSLAFLNLTQNDF 579
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 538 YPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDN 597
+P+LQ +DL ++ + + ++LS ++GN I+ L+ LQ L +
Sbjct: 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134
Query: 598 QLTGKIPAQLFRSSFLIRLNLRRNQL-SDKIPAEIGKLSRLQYLD 641
L + L LN+ N + S K+P L+ L++LD
Sbjct: 135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 180 FKGMASLTDL-WLDYNL--LEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
F G++SL L ++ NL LE FP I L L+++ NLI E ++L NLE+
Sbjct: 120 FSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 177
Query: 237 LNLTKNSFEGEIPREIKTFPKL 258
L+L+ N + +++ ++
Sbjct: 178 LDLSSNKIQSIYCTDLRVLHQM 199
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 11/120 (9%)
Query: 528 DGDITNALGIYPDLQY-------IDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIP 580
D DI N + + D +Y +DL + Q+ + ++N K L+ ++GN + +P
Sbjct: 206 DDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNI-SANIFKYDFLTRLYLNGNSL-TELP 263
Query: 581 AELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYL 640
AE+ NL+ L+ LD+ N+LT +PA+L S F ++ + + +P E G L LQ+L
Sbjct: 264 AEIKNLSNLRVLDLSHNRLTS-LPAEL-GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 72/186 (38%), Gaps = 51/186 (27%)
Query: 226 EQLTH---LENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNL 282
+QL H L NL+ N++ N F+ + L L L N LT +P EI LSNL
Sbjct: 223 DQLWHALDLSNLQIFNISANIFKYDF---------LTRLYLNGNSLT-ELPAEIKNLSNL 272
Query: 283 EILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLTG 342
+L+ N +S+P ELG C L + +N+
Sbjct: 273 RVLDLSHNRL-------------------------TSLPAELGSCFQLKYFYF-FDNMVT 306
Query: 343 SLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFS 402
+LP +L + LG+ N L + L ++G + YL DN+
Sbjct: 307 TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLI------------FYLRDNRPE 354
Query: 403 GPIPQQ 408
P+P +
Sbjct: 355 IPLPHE 360
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 16/86 (18%)
Query: 330 LTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLP 389
LT L L+ N+LT LP + +L + L +S+N+L+ LP E+G
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS--------------LPAELGSCF 293
Query: 390 KLEYLYLFDNKFSGPIPQQIGNLTNL 415
+L+Y Y FDN + +P + GNL NL
Sbjct: 294 QLKYFYFFDNMVTT-LPWEFGNLCNL 318
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 101 VGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQL 156
+ +I A I L L L+ N+LT +P EI LS+LRVL L +N LT +P +L
Sbjct: 236 IFNISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTS-LPAEL 289
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 137/319 (42%), Gaps = 51/319 (15%)
Query: 326 FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI 385
+ NLT + S N LT PL +L ++ ++ ++NNQ+++I L + +L+G
Sbjct: 61 YLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLA-NLTNLTG------ 111
Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXX 445
L LF+N+ + P + NLTNL L+L++N TI +
Sbjct: 112 --------LTLFNNQITDIDP--LKNLTNLNRLELSSN--------TISDISALSGLTSL 153
Query: 446 XXXXTGTLPPEIGNSKSDFGP----RFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVN 501
+ N +D P L + S N S + + NL L A N
Sbjct: 154 QQLSFSS------NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 205
Query: 502 KLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGK 561
++ P L T L + L N+L DI L +L +DL +NQ+S + +
Sbjct: 206 QISDITP--LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNL--APLSG 259
Query: 562 CTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRN 621
T L+ ++ N+I P L LT L NL++ +NQL P ++ L L L N
Sbjct: 260 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFN 315
Query: 622 QLSDKIPAEIGKLSRLQYL 640
+SD P + L++LQ L
Sbjct: 316 NISDISP--VSSLTKLQRL 332
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 124/316 (39%), Gaps = 63/316 (19%)
Query: 108 IGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRI 167
+ N TKL+ + +++N + + P + L++L L L+NN +T P L NL N L +
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 168 GANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQ 227
+N + D G+ SL L N + +A + L LD+S N + I
Sbjct: 137 SSNTISDIS--ALSGLTSLQQLSFSSNQVTDLKP-LANLTTLERLDISSNKVSD---ISV 190
Query: 228 LTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT--GTIPDEIGLLSNLEIL 285
L L NLE L T N P I T L L L N+L GT+ L+NL L
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIGTLAS----LTNLTDL 244
Query: 286 EFHENLFHGLIPSSXXXXXXXXXXXXKS-------AGLNSSIPKEL-----------GFC 327
+ N L P S AGL + EL
Sbjct: 245 DLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 304
Query: 328 ANLTFLELSINNLTGSLPLS--------------------LASLRQISELGISNNQLSEI 367
NLT+L L NN++ P+S LA+L I+ L +NQ+S++
Sbjct: 305 KNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDL 364
Query: 368 ISL-------QLQMND 376
L QL +ND
Sbjct: 365 TPLANLTRITQLGLND 380
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 131/332 (39%), Gaps = 86/332 (25%)
Query: 107 GIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLR 166
G+ L ++ S+N LT+ P + L+ L +L+ NN + P L+NL N L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 113
Query: 167 IGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIE 226
+ N + D DP K + +L L L N + S ++ + L L S N + P+
Sbjct: 114 LFNNQITDIDP--LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTDLKPLA 170
Query: 227 QLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLK---LGQNKLTGTIPDEIGLLSNLE 283
LT LE L+ +I KL +L+ N+++ P +G+L+NL+
Sbjct: 171 NLTTLERLD--------ISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLD 220
Query: 284 ILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLTGS 343
L + N K++G
Sbjct: 221 ELSLNGNQL-----------------------------KDIG------------------ 233
Query: 344 LPLSLASLRQISELGISNNQLS---------EIISLQLQMNDLSGKLPPEIGLLPKLEYL 394
+LASL +++L ++NNQ+S ++ L+L N +S P + L L L
Sbjct: 234 ---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNL 288
Query: 395 YLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN 426
L +N+ P I NL NL L L +FN
Sbjct: 289 ELNENQLEDISP--ISNLKNLTYLTL---YFN 315
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 138/347 (39%), Gaps = 45/347 (12%)
Query: 220 MGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLL 279
+G I+ + +L NL +N + N P +K KL + + N++ P + L
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 106
Query: 280 SNLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLE---LS 336
+NL L N + P L+S+ ++ + LT L+ S
Sbjct: 107 TNLTGLTLFNNQITDIDP-------LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFS 159
Query: 337 INNLTGSLPLSLASLRQISELGISNNQLSEII---------SLQLQMNDLSGKLPPEIGL 387
N +T PL A+L + L IS+N++S+I SL N +S P +G+
Sbjct: 160 SNQVTDLKPL--ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGI 215
Query: 388 LPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXX 447
L L+ L L N+ + +LTNL DL LANN I N
Sbjct: 216 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN--------QISNLAPLSGLTKLTE 265
Query: 448 XXTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPI 507
G +I N G L N+ + N P I NL YLT N +
Sbjct: 266 LKLG--ANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 321
Query: 508 PESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGV 554
P S + T L R+ N++ D++ +L ++ ++ G NQ+S +
Sbjct: 322 PVS--SLTKLQRLFFSNNKV-SDVS-SLANLTNINWLSAGHNQISDL 364
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 137/319 (42%), Gaps = 51/319 (15%)
Query: 326 FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI 385
+ NLT + S N LT PL +L ++ ++ ++NNQ+++I L + +L+G
Sbjct: 61 YLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLA-NLTNLTG------ 111
Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXX 445
L LF+N+ + P + NLTNL L+L++N TI +
Sbjct: 112 --------LTLFNNQITDIDP--LKNLTNLNRLELSSN--------TISDISALSGLTSL 153
Query: 446 XXXXTGTLPPEIGNSKSDFGP----RFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVN 501
+ N +D P L + S N S + + NL L A N
Sbjct: 154 QQLSFSS------NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 205
Query: 502 KLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGK 561
++ P L T L + L N+L DI L +L +DL +NQ+S + +
Sbjct: 206 QISDITP--LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNL--APLSG 259
Query: 562 CTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRN 621
T L+ ++ N+I P L LT L NL++ +NQL P ++ L L L N
Sbjct: 260 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFN 315
Query: 622 QLSDKIPAEIGKLSRLQYL 640
+SD P + L++LQ L
Sbjct: 316 NISDISP--VSSLTKLQRL 332
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 124/316 (39%), Gaps = 63/316 (19%)
Query: 108 IGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRI 167
+ N TKL+ + +++N + + P + L++L L L+NN +T P L NL N L +
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 168 GANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQ 227
+N + D G+ SL L N + +A + L LD+S N + I
Sbjct: 137 SSNTISDIS--ALSGLTSLQQLSFSSNQVTDLKP-LANLTTLERLDISSNKVSD---ISV 190
Query: 228 LTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT--GTIPDEIGLLSNLEIL 285
L L NLE L T N P I T L L L N+L GT+ L+NL L
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIGTLAS----LTNLTDL 244
Query: 286 EFHENLFHGLIPSSXXXXXXXXXXXXKS-------AGLNSSIPKEL-----------GFC 327
+ N L P S AGL + EL
Sbjct: 245 DLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 304
Query: 328 ANLTFLELSINNLTGSLPLS--------------------LASLRQISELGISNNQLSEI 367
NLT+L L NN++ P+S LA+L I+ L +NQ+S++
Sbjct: 305 KNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL 364
Query: 368 ISL-------QLQMND 376
L QL +ND
Sbjct: 365 TPLANLTRITQLGLND 380
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 131/332 (39%), Gaps = 86/332 (25%)
Query: 107 GIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLR 166
G+ L ++ S+N LT+ P + L+ L +L+ NN + P L+NL N L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 113
Query: 167 IGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIE 226
+ N + D DP K + +L L L N + S ++ + L L S N + P+
Sbjct: 114 LFNNQITDIDP--LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTDLKPLA 170
Query: 227 QLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLK---LGQNKLTGTIPDEIGLLSNLE 283
LT LE L+ +I KL +L+ N+++ P +G+L+NL+
Sbjct: 171 NLTTLERLD--------ISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLD 220
Query: 284 ILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLTGS 343
L + N K++G
Sbjct: 221 ELSLNGNQL-----------------------------KDIG------------------ 233
Query: 344 LPLSLASLRQISELGISNNQLS---------EIISLQLQMNDLSGKLPPEIGLLPKLEYL 394
+LASL +++L ++NNQ+S ++ L+L N +S P + L L L
Sbjct: 234 ---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNL 288
Query: 395 YLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN 426
L +N+ P I NL NL L L +FN
Sbjct: 289 ELNENQLEDISP--ISNLKNLTYLTL---YFN 315
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 94/223 (42%), Gaps = 29/223 (13%)
Query: 220 MGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLL 279
+G I+ + +L NL +N + N P +K KL + + N++ P + L
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 106
Query: 280 SNLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLE---LS 336
+NL L N + P L+S+ ++ + LT L+ S
Sbjct: 107 TNLTGLTLFNNQITDIDP-------LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFS 159
Query: 337 INNLTGSLPLSLASLRQISELGISNNQLSEII---------SLQLQMNDLSGKLPPEIGL 387
N +T PL A+L + L IS+N++S+I SL N +S P +G+
Sbjct: 160 SNQVTDLKPL--ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGI 215
Query: 388 LPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIP 430
L L+ L L N+ + +LTNL DL LANN + P
Sbjct: 216 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 256
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 520 VRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGI 579
L+ +RL + + +L I+ +NQL+ + + T L + ++ N+I
Sbjct: 44 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADIT 101
Query: 580 PAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQY 639
P L NLT L L +F+NQ+T P L + L RL L N +SD I A G L+ LQ
Sbjct: 102 P--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSG-LTSLQQ 155
Query: 640 L 640
L
Sbjct: 156 L 156
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 536 GIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIF 595
GI Q I L N++S V +++ C NL+ + N + G A LT L+ LD+
Sbjct: 28 GIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLS 87
Query: 596 DNQLTGKIPAQLFRS-SFLIRLNLRRNQLSDKIPAEIGKLSRLQYL 640
DN + FR L L+L R L + P L+ LQYL
Sbjct: 88 DNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYL 133
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 135 LSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYN 194
L+ L+ L L +N+L + +L N L + N + F+G+ SL L L N
Sbjct: 127 LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQN 186
Query: 195 LLEKF-PSFIAECSKLMFLDL-SDNLIMGHIPIEQLTHLENLEYLNLTKNSF 244
+ + P + +LM L L ++NL M +P E L L +L+YL L N +
Sbjct: 187 HVARVHPHAFRDLGRLMTLYLFANNLSM--LPAEVLVPLRSLQYLRLNDNPW 236
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 17/106 (16%)
Query: 327 CANLTFLELSINNLTGSLPLSLASLRQISELGISNNQ------------LSEIISLQLQM 374
C NLT L L N L G + L + +L +S+N L + +L L
Sbjct: 54 CRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDR 113
Query: 375 NDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIP----QQIGNLTNLF 416
L P L L+YLYL DN +P + +GNLT+LF
Sbjct: 114 CGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLGNLTHLF 158
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 541 LQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT 600
LQY+ L DN L + + + NL++ + GNRI L L L + N +
Sbjct: 130 LQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVA 189
Query: 601 GKIPAQLFRSSFLIRLNLRRNQLSDKIPAEI-GKLSRLQYL 640
P L+ L L N LS +PAE+ L LQYL
Sbjct: 190 RVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVPLRSLQYL 229
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 74/198 (37%), Gaps = 27/198 (13%)
Query: 103 SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNA 162
++P GI +++ I L N ++ +L +L L++N+L G + L
Sbjct: 24 AVPTGIPASSQRIFLH--GNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLL 81
Query: 163 WLLRIGAN-YLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMG 221
L + N L DP F+G+ L L LD L+ +L L G
Sbjct: 82 EQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQ---------------ELGPGLFRG 126
Query: 222 HIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSN 281
L L+YL L N+ + + L HL L N++ L +
Sbjct: 127 ---------LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHS 177
Query: 282 LEILEFHENLFHGLIPSS 299
L+ L H+N + P +
Sbjct: 178 LDRLLLHQNHVARVHPHA 195
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 137/319 (42%), Gaps = 51/319 (15%)
Query: 326 FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI 385
+ NLT + S N LT PL +L ++ ++ ++NNQ+++I L + +L+G
Sbjct: 61 YLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLA-NLTNLTG------ 111
Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXX 445
L LF+N+ + P + NLTNL L+L++N TI +
Sbjct: 112 --------LTLFNNQITDIDP--LKNLTNLNRLELSSN--------TISDISALSGLTSL 153
Query: 446 XXXXTGTLPPEIGNSKSDFGP----RFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVN 501
+ N +D P L + S N S + + NL L A N
Sbjct: 154 QQLNFSS------NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 205
Query: 502 KLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGK 561
++ P L T L + L N+L DI L +L +DL +NQ+S + +
Sbjct: 206 QISDITP--LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNL--APLSG 259
Query: 562 CTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRN 621
T L+ ++ N+I P L LT L NL++ +NQL P ++ L L L N
Sbjct: 260 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFN 315
Query: 622 QLSDKIPAEIGKLSRLQYL 640
+SD P + L++LQ L
Sbjct: 316 NISDISP--VSSLTKLQRL 332
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 124/316 (39%), Gaps = 63/316 (19%)
Query: 108 IGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRI 167
+ N TKL+ + +++N + + P + L++L L L+NN +T P L NL N L +
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 168 GANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQ 227
+N + D G+ SL L N + +A + L LD+S N + I
Sbjct: 137 SSNTISDIS--ALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSD---ISV 190
Query: 228 LTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT--GTIPDEIGLLSNLEIL 285
L L NLE L T N P I T L L L N+L GT+ L+NL L
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIGTLAS----LTNLTDL 244
Query: 286 EFHENLFHGLIPSSXXXXXXXXXXXXKS-------AGLNSSIPKEL-----------GFC 327
+ N L P S AGL + EL
Sbjct: 245 DLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 304
Query: 328 ANLTFLELSINNLTGSLPLS--------------------LASLRQISELGISNNQLSEI 367
NLT+L L NN++ P+S LA+L I+ L +NQ+S++
Sbjct: 305 KNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL 364
Query: 368 ISL-------QLQMND 376
L QL +ND
Sbjct: 365 TPLANLTRITQLGLND 380
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 132/332 (39%), Gaps = 86/332 (25%)
Query: 107 GIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLR 166
G+ L ++ S+N LT+ P + L+ L +L+ NN + P L+NL N L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 113
Query: 167 IGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIE 226
+ N + D DP K + +L L L N + S ++ + L L+ S N + P+
Sbjct: 114 LFNNQITDIDP--LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVTDLKPLA 170
Query: 227 QLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLK---LGQNKLTGTIPDEIGLLSNLE 283
LT LE L+ +I KL +L+ N+++ P +G+L+NL+
Sbjct: 171 NLTTLERLD--------ISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLD 220
Query: 284 ILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLTGS 343
L + N K++G
Sbjct: 221 ELSLNGNQL-----------------------------KDIG------------------ 233
Query: 344 LPLSLASLRQISELGISNNQLS---------EIISLQLQMNDLSGKLPPEIGLLPKLEYL 394
+LASL +++L ++NNQ+S ++ L+L N +S P + L L L
Sbjct: 234 ---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNL 288
Query: 395 YLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN 426
L +N+ P I NL NL L L +FN
Sbjct: 289 ELNENQLEDISP--ISNLKNLTYLTL---YFN 315
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 94/223 (42%), Gaps = 29/223 (13%)
Query: 220 MGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLL 279
+G I+ + +L NL +N + N P +K KL + + N++ P + L
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 106
Query: 280 SNLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLE---LS 336
+NL L N + P L+S+ ++ + LT L+ S
Sbjct: 107 TNLTGLTLFNNQITDIDP-------LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFS 159
Query: 337 INNLTGSLPLSLASLRQISELGISNNQLSEII---------SLQLQMNDLSGKLPPEIGL 387
N +T PL A+L + L IS+N++S+I SL N +S P +G+
Sbjct: 160 SNQVTDLKPL--ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGI 215
Query: 388 LPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIP 430
L L+ L L N+ + +LTNL DL LANN + P
Sbjct: 216 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 256
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 520 VRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGI 579
L+ +RL + + +L I+ +NQL+ + + T L + ++ N+I
Sbjct: 44 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADIT 101
Query: 580 PAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQY 639
P L NLT L L +F+NQ+T P L + L RL L N +SD I A G L+ LQ
Sbjct: 102 P--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSG-LTSLQQ 155
Query: 640 LD 641
L+
Sbjct: 156 LN 157
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 21/180 (11%)
Query: 112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANY 171
T L +LDLS NNL +L L L N++ H L L N L + ++
Sbjct: 258 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 317
Query: 172 LEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHL 231
+ + + + D + +C L L++ DN I G I T L
Sbjct: 318 TK--QSISLASLPKIDDFSFQW----------LKC--LEHLNMEDNDIPG-IKSNMFTGL 362
Query: 232 ENLEYLNLTKNSFEGEIPREIKTFPKLRH-----LKLGQNKLTGTIPDEIGLLSNLEILE 286
NL+YL+L+ NSF +TF L H L L +NK++ D L +LE+L+
Sbjct: 363 INLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 421
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 69/152 (45%), Gaps = 17/152 (11%)
Query: 134 YLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDY 193
YLS + L L NS +P +LQ L R+ + D P F+ + +LT L L
Sbjct: 446 YLSYNKYLQLTRNSF-ALVP----SLQRLMLRRVALKNV-DSSPSPFQPLRNLTILDLSN 499
Query: 194 NLLEKFPSFIAE-CSKLMFLDLSDN---LIMGHI----PIEQLTHLENLEYLNLTKNSFE 245
N + + E KL LDL N + H PI L L +L LNL N F+
Sbjct: 500 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 559
Query: 246 GEIPREI-KTFPKLRHLKLGQNKLTGTIPDEI 276
EIP E+ K +L+ + LG N L T+P +
Sbjct: 560 -EIPVEVFKDLFELKIIDLGLNNL-NTLPASV 589
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 21/180 (11%)
Query: 112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANY 171
T L +LDLS NNL +L L L N++ H L L N L + ++
Sbjct: 253 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 312
Query: 172 LEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHL 231
+ + + + D + +C L L++ DN I G I T L
Sbjct: 313 TK--QSISLASLPKIDDFSFQW----------LKC--LEHLNMEDNDIPG-IKSNMFTGL 357
Query: 232 ENLEYLNLTKNSFEGEIPREIKTFPKLRH-----LKLGQNKLTGTIPDEIGLLSNLEILE 286
NL+YL+L+ NSF +TF L H L L +NK++ D L +LE+L+
Sbjct: 358 INLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 416
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 69/152 (45%), Gaps = 17/152 (11%)
Query: 134 YLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDY 193
YLS + L L NS +P +LQ L R+ + D P F+ + +LT L L
Sbjct: 441 YLSYNKYLQLTRNSF-ALVP----SLQRLMLRRVALKNV-DSSPSPFQPLRNLTILDLSN 494
Query: 194 NLLEKFPSFIAE-CSKLMFLDLSDN---LIMGHI----PIEQLTHLENLEYLNLTKNSFE 245
N + + E KL LDL N + H PI L L +L LNL N F+
Sbjct: 495 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 554
Query: 246 GEIPREI-KTFPKLRHLKLGQNKLTGTIPDEI 276
EIP E+ K +L+ + LG N L T+P +
Sbjct: 555 -EIPVEVFKDLFELKIIDLGLNNL-NTLPASV 584
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 21/180 (11%)
Query: 112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANY 171
T L +LDLS NNL +L L L N++ H L L N L + ++
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307
Query: 172 LEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHL 231
+ + + + D + +C L L++ DN I G I T L
Sbjct: 308 TK--QSISLASLPKIDDFSFQW----------LKC--LEHLNMEDNDIPG-IKSNMFTGL 352
Query: 232 ENLEYLNLTKNSFEGEIPREIKTFPKLRH-----LKLGQNKLTGTIPDEIGLLSNLEILE 286
NL+YL+L+ NSF +TF L H L L +NK++ D L +LE+L+
Sbjct: 353 INLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 69/152 (45%), Gaps = 17/152 (11%)
Query: 134 YLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDY 193
YLS + L L NS +P +LQ L R+ + D P F+ + +LT L L
Sbjct: 436 YLSYNKYLQLTRNSF-ALVP----SLQRLMLRRVALKNV-DSSPSPFQPLRNLTILDLSN 489
Query: 194 NLLEKFPSFIAE-CSKLMFLDLSDN---LIMGHI----PIEQLTHLENLEYLNLTKNSFE 245
N + + E KL LDL N + H PI L L +L LNL N F+
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549
Query: 246 GEIPREI-KTFPKLRHLKLGQNKLTGTIPDEI 276
EIP E+ K +L+ + LG N L T+P +
Sbjct: 550 -EIPVEVFKDLFELKIIDLGLNNL-NTLPASV 579
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 74/183 (40%), Gaps = 5/183 (2%)
Query: 104 IPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAW 163
+P GI T+L L+L N + +L L +L L N + + L N
Sbjct: 58 VPDGISTNTRL--LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115
Query: 164 LLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSF-IAECSKLMFLDLSDNLIMGH 222
L + N L F ++ L +LWL N +E PS+ L LDL + + +
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175
Query: 223 IPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNL 282
I L NL YLNL + EIP + KL L L N L+ P L +L
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233
Query: 283 EIL 285
+ L
Sbjct: 234 QKL 236
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 536 GIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIF 595
GI + + ++L +NQ+ + +++ +L ++S N I+ L L L++F
Sbjct: 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120
Query: 596 DNQLTGKIPAQLFRSSFLIRLNLRRNQLS-------DKIPA----EIGKLSRLQYLD 641
DN+LT S L L LR N + ++IP+ ++G+L RL Y+
Sbjct: 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 528 DGDITNALGIY--PDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGN 585
+ DI + GI P+++Y+ LG N+L + S + TNL+ ++GN+++
Sbjct: 50 NSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDK 107
Query: 586 LTYLQNLDIFDNQLTGKIPAQLF-RSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
LT L+ L + +NQL +P +F + + L LNL NQL KL+ L LD
Sbjct: 108 LTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 4/165 (2%)
Query: 477 NNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALG 536
NN K GI N+ YL NKL +L T LT + L N+L
Sbjct: 49 NNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFD 106
Query: 537 IYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFD 596
+L+ + L +NQL + + K TNL+ ++ N+++ LT L LD+
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166
Query: 597 NQLTGKIPAQLF-RSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYL 640
NQL +P +F + + L L L +NQL +L+ LQY+
Sbjct: 167 NQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 9/173 (5%)
Query: 106 AGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLL 165
+ + T L L L+ N L + L++L+ L+L N L L N L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 166 RIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIP 224
+ N L+ F + +LT+L L YN L+ P + + ++L L L N + +P
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VP 197
Query: 225 IEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIG 277
L +L+Y+ L N ++ T P +R+L NK +G + + G
Sbjct: 198 DGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 243
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%)
Query: 515 TGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNR 574
T LT + L N+L +L +DL NQL + + K T L + R+ N+
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192
Query: 575 IKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFL 613
+K LT LQ + + DN P + S ++
Sbjct: 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 231
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 64/167 (38%), Gaps = 15/167 (8%)
Query: 252 IKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSXXXXXXXXXXXX 311
I+ P +R+L LG NKL + L+NL L N L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 312 KSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSL-ASLRQISELGISNNQ------- 363
L S NLT+L L+ N L SLP + L ++EL +S NQ
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
Query: 364 ----LSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIP 406
L+++ L+L N L L L+Y++L DN + P
Sbjct: 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 329 NLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLL 388
+L LEL N LTG P + I EL + N++ EI + +GL
Sbjct: 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF------------LGL- 101
Query: 389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN 426
+L+ L L+DN+ S +P +L +L L LA+N FN
Sbjct: 102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%)
Query: 535 LGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDI 594
G P L ++L NQL+G+ + + +++ ++ N+IK L L+ L++
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 595 FDNQLTGKIPAQLFRSSFLIRLNLRRN 621
+DNQ++ +P + L LNL N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 136/316 (43%), Gaps = 40/316 (12%)
Query: 326 FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI 385
+ NL +L L+ N +T PLS +L +++ L I N++++I +LQ
Sbjct: 64 YLTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKITDISALQN------------- 108
Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXX 445
L L LYL ++ S P + NLT + L L N N S S + N
Sbjct: 109 --LTNLRELYLNEDNISDISP--LANLTKXYSLNLGANH-NLSDLSPLSNXTGLNYLTVT 163
Query: 446 XXXXTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVG 505
P I N L ++S +YN P + +L Y TA VN++
Sbjct: 164 ESKVKDVTP--IANLTD------LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213
Query: 506 PIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNL 565
P + N T L +++ N++ D++ L L ++++G NQ+S + + T L
Sbjct: 214 ITP--VANXTRLNSLKIGNNKI-TDLS-PLANLSQLTWLEIGTNQISDI--NAVKDLTKL 267
Query: 566 SNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSD 625
+ N+I + L NL+ L +L + +NQL + + + L L L +N ++D
Sbjct: 268 KXLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITD 325
Query: 626 KIPAEIGKLSRLQYLD 641
P + LS+ D
Sbjct: 326 IRP--LASLSKXDSAD 339
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 131/302 (43%), Gaps = 38/302 (12%)
Query: 132 IGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWL 191
I YL++L L L N +T P LSNL L IG N + D + + +L +L+L
Sbjct: 62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYL 117
Query: 192 DYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPRE 251
+ + + S +A +K L+L N + + L++ L YL +T++ + P
Sbjct: 118 NEDNISDI-SPLANLTKXYSLNLGANHNLSDL--SPLSNXTGLNYLTVTESKVKDVTP-- 172
Query: 252 IKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSXXXXXXXXXXXX 311
I L L L N++ P + L++L + N + P +
Sbjct: 173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANXTRL------- 223
Query: 312 KSAGLNSSIPKELGFCANL---TFLELSINNLTGSLPLSLASLRQISELGISNNQLSEII 368
S + ++ +L ANL T+LE+ N ++ ++ L ++ L + +NQ+S+I
Sbjct: 224 NSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQISDIS 281
Query: 369 SLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGS 428
L N+LS +L L+L +N+ + IG LTNL L L+ N
Sbjct: 282 VL----NNLS-----------QLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDI 326
Query: 429 IP 430
P
Sbjct: 327 RP 328
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 30/201 (14%)
Query: 225 IEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEI 284
I+ + +L NLEYLNL N P + KL +L +G NK+T + L+NL
Sbjct: 59 IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE 114
Query: 285 LEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLTG-- 342
L +E+ + P A L LG NL+ L ++N TG
Sbjct: 115 LYLNEDNISDISP---------------LANLTKXYSLNLGANHNLSDLS-PLSNXTGLN 158
Query: 343 SLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFS 402
L ++ + ++ ++ + L+++ SL L N + P + L L Y + N+ +
Sbjct: 159 YLTVTESKVKDVTPIA----NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212
Query: 403 GPIPQQIGNLTNLFDLQLANN 423
P + N T L L++ NN
Sbjct: 213 DITP--VANXTRLNSLKIGNN 231
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 37/275 (13%)
Query: 108 IGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRI 167
+ N KL L + +N +T+ + L++LR L L ++++ P L+NL + L +
Sbjct: 84 LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKXYSLNL 139
Query: 168 GANY-LEDPDPV--------------KFKG---MASLTDLW---LDYNLLEKFPSFIAEC 206
GAN+ L D P+ K K +A+LTDL+ L+YN +E S +A
Sbjct: 140 GANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI-SPLASL 198
Query: 207 SKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQN 266
+ L + N I P+ T L +L+ N N P + +L L++G N
Sbjct: 199 TSLHYFTAYVNQITDITPVANXTRLNSLKIGN---NKITDLSP--LANLSQLTWLEIGTN 253
Query: 267 KLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGF 326
+++ + + L+ L+ L N + S + L + + +G
Sbjct: 254 QISDI--NAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGG 309
Query: 327 CANLTFLELSINNLTGSLPLSLASLRQISELGISN 361
NLT L LS N++T P LASL + +N
Sbjct: 310 LTNLTTLFLSQNHITDIRP--LASLSKXDSADFAN 342
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 180 FKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLN 238
F + SLT L+L N L+ P+ + + + L +L+LS N + +P L L+ L
Sbjct: 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELA 106
Query: 239 LTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEI-GLLSNLEILEFHENLFHGLIP 297
L N + +L+ L+L QN+L ++PD + L++L+ + H+N + P
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 11/176 (6%)
Query: 103 SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNA 162
S+P GI T LDL +N+L + L+ L L L N L + L +
Sbjct: 21 SVPTGIPAQT--TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78
Query: 163 WLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMG 221
L + N L+ F + L +L L+ N L+ P + + ++L L L N +
Sbjct: 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138
Query: 222 HIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIG 277
+P L +L+Y+ L N ++ T P +R+L NK +G + + G
Sbjct: 139 -VPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 186
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 5/134 (3%)
Query: 476 YNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWN-CTGLTRVRLEQNRLDGDITNA 534
Y+ +P GI YL N L +P +++ T LT++ L N+L
Sbjct: 15 YSQGRTSVPTGI--PAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGV 71
Query: 535 LGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDI 594
L Y++L NQL + + K T L ++ N+++ LT L++L +
Sbjct: 72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131
Query: 595 FDNQLTGKIPAQLF 608
+ NQL +P +F
Sbjct: 132 YQNQLKS-VPDGVF 144
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 510 SLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFR 569
S +C+G T Q R + GI Y+DL N L + + + T+L+
Sbjct: 3 SRCSCSGTTVECYSQGR----TSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLY 58
Query: 570 ISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLF-RSSFLIRLNLRRNQLSDKIP 628
+ GN+++ LT L L++ NQL +P +F + + L L L NQL
Sbjct: 59 LGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQSLPD 117
Query: 629 AEIGKLSRLQYL 640
KL++L+ L
Sbjct: 118 GVFDKLTQLKDL 129
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 328 ANLTFLELSINNLTGSLPLSL-ASLRQISELGISNNQL-----------SEIISLQLQMN 375
+LT+L LS N L SLP + L Q+ EL ++ NQL +++ L+L N
Sbjct: 76 TSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134
Query: 376 DLSGKLPPEIGLLPKLEYLYLFDNKFSGPIP 406
L L L+Y++L DN + P
Sbjct: 135 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 518 TRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKG 577
T + LE N L L + LG N+L + + K T+L+ +S N+++
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 578 GIPAELGNLTYLQNLDIFDNQLTGKIPAQLF-RSSFLIRLNLRRNQLSDKIPAEIGKLSR 636
LT L+ L + NQL +P +F + + L L L +NQL +L+
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 637 LQYL 640
LQY+
Sbjct: 150 LQYI 153
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 40/99 (40%)
Query: 515 TGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNR 574
T LT + L N+L L+ + L NQL + + K T L + R+ N+
Sbjct: 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135
Query: 575 IKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFL 613
+K LT LQ + + DN P + S ++
Sbjct: 136 LKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 174
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Query: 542 QYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG 601
+Y++L +N + + T + +L ++S N ++ L L L++FDN+LT
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT- 96
Query: 602 KIPAQLFRS-SFLIRLNLRRNQLS-------DKIPA----EIGKLSRLQYL 640
+P Q F S L L LR N + +++P+ ++G+L RL+Y+
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI 147
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 7/180 (3%)
Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGA-NYLEDP 175
L+L N LT YLS LR L L NN + + + + + L +G LE
Sbjct: 88 LELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI 147
Query: 176 DPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIP--IEQLTHLEN 233
F+G+ +L L L L+ P+ A +L L+LS N + P + LT L
Sbjct: 148 SEAAFEGLVNLRYLNLGMCNLKDIPNLTA-LVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 234 LEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFH 293
L ++ + E ++K+ L L L N L D L LE + + N +H
Sbjct: 207 LWLMHAQVATIERNAFDDLKS---LEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWH 263
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 26/121 (21%)
Query: 314 AGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQ 373
A + +SIP N +L L N++ + LR + L +S N + +I
Sbjct: 27 AEVPASIP------VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKI------ 74
Query: 374 MNDLSGKLPPEIGL---LPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIP 430
E+G LP L L LFDN+ + Q L+ L +L L NN SIP
Sbjct: 75 ----------EVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIP 123
Query: 431 S 431
S
Sbjct: 124 S 124
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Query: 101 VGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQ 160
+ +P GI + T+ L+L NN+ +L L VL L NS+ + L
Sbjct: 66 LSEVPQGIPSNTRY--LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA 123
Query: 161 NAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSF-IAECSKLMFLDLSDNLI 219
+ L + N+L F+ ++ L +LWL N +E PS+ LM LDL +
Sbjct: 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK 183
Query: 220 MGHIPIEQLTHLENLEYLNL 239
+ +I L NL+YLNL
Sbjct: 184 LEYISEGAFEGLFNLKYLNL 203
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Query: 542 QYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG 601
+Y++L +N + + T + +L ++S N ++ L L L++FDN+LT
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT- 96
Query: 602 KIPAQLFRS-SFLIRLNLRRNQLS-------DKIPA----EIGKLSRLQYL 640
+P Q F S L L LR N + +++P+ ++G+L RL+Y+
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI 147
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 7/180 (3%)
Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGA-NYLEDP 175
L+L N LT YLS LR L L NN + + + + + L +G LE
Sbjct: 88 LELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI 147
Query: 176 DPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIP--IEQLTHLEN 233
F+G+ +L L L L+ P+ A +L L+LS N + P + LT L
Sbjct: 148 SEAAFEGLVNLRYLNLGMCNLKDIPNLTA-LVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 234 LEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFH 293
L ++ + E ++K+ L L L N L D L LE + + N +H
Sbjct: 207 LWLMHAQVATIERNAFDDLKS---LEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWH 263
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 26/125 (20%)
Query: 314 AGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQ 373
A + +SIP N +L L N++ + LR + L +S N + +I
Sbjct: 27 AEVPASIP------VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKI------ 74
Query: 374 MNDLSGKLPPEIGL---LPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIP 430
E+G LP L L LFDN+ + Q L+ L +L L NN SIP
Sbjct: 75 ----------EVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIP 123
Query: 431 STIGN 435
S N
Sbjct: 124 SYAFN 128
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 161 NAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAEC-SKLMFLDLSDN-- 217
NA +L + N + +P F + +L +L+L N L P + + ++L LDL N
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100
Query: 218 LIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKL 268
++ ++L HL+ L ++ K + E+PR I+ L HL L QN+L
Sbjct: 101 TVLPSAVFDRLVHLKEL-FMCCNKLT---ELPRGIERLTHLTHLALDQNQL 147
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 15/160 (9%)
Query: 450 TGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTAN-VNKLVGPIP 508
+ P + S + R R+ S +P GI ++YL N + KL +
Sbjct: 10 SAACPSQCSCSGTTVDCRSKRHAS---------VPAGIPTNAQILYLHDNQITKLEPGVF 60
Query: 509 ESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNF 568
+SL N L + L N+L L +DLG NQL+ + ++ + + +L
Sbjct: 61 DSLIN---LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117
Query: 569 RISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLF 608
+ N++ +P + LT+L +L + NQL IP F
Sbjct: 118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAF 155
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 536 GIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAEL-GNLTYLQNLDI 594
GI + Q + L DNQ++ + + NL + N++ G +P + +LT L LD+
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDL 95
Query: 595 FDNQLTGKIPAQLF-RSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYL 640
NQLT +P+ +F R L L + N+L++ +P I +L+ L +L
Sbjct: 96 GTNQLT-VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHL 140
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 180 FKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLN 238
F+G+ LT L LDYN L+ + + + ++L L L++N + +P+ HL L+ L
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLY 113
Query: 239 LTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 290
L N + KL+ L+L N+L L+NL+ L N
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 515 TGLTRVRLEQNRLDGDITNALGIYPDLQ---YIDLGDNQLSGVLTSNWGKCTNLSNFRIS 571
T LT + L+ N+L T + G++ DL + L +NQL+ + + T L +
Sbjct: 59 TKLTWLNLDYNQLQ---TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115
Query: 572 GNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLF-RSSFLIRLNLRRNQLSDKIPAE 630
GN++K LT L+ L + NQL IPA F + + L L+L NQL
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 631 IGKLSRLQYL 640
+L +LQ +
Sbjct: 175 FDRLGKLQTI 184
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 535 LGIYPDLQYID---LGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPA-ELGNLTYLQ 590
LG++ L +D LG NQL + + + + T L R++ N+++ IPA LT LQ
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQ 158
Query: 591 NLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSR 636
L + NQL R L + L NQ D EI LS+
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF-DCSRCEILYLSQ 203
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Query: 112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANY 171
TKL L+L N L L++L L L NN L +L L +G N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 172 LEDPDPVKFKGMASLTDLWLDYNLLEKFPS-FIAECSKLMFLDLSDNLIMGHIPIEQLTH 230
L+ F + L +L L+ N L+ P+ + + L L LS N + +P
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDR 177
Query: 231 LENLEYLNLTKNSFE 245
L L+ + L N F+
Sbjct: 178 LGKLQTITLFGNQFD 192
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 545 DLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAE-LGNLTYLQNLDIFDNQLT 600
+L DN++SG L KC NL++ +SGN+IK E L L L++LD+F+ ++T
Sbjct: 70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 180 FKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLN 238
F+G+ LT L LDYN L+ + + + ++L L L++N + +P+ HL L+ L
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLY 113
Query: 239 LTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 290
L N + KL+ L+L N+L L+NL+ L N
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 515 TGLTRVRLEQNRLDGDITNALGIYPDLQ---YIDLGDNQLSGVLTSNWGKCTNLSNFRIS 571
T LT + L+ N+L T + G++ DL + L +NQL+ + + T L +
Sbjct: 59 TKLTWLNLDYNQLQ---TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115
Query: 572 GNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLF-RSSFLIRLNLRRNQLSDKIPAE 630
GN++K LT L+ L + NQL IPA F + + L L+L NQL
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 631 IGKLSRLQYL 640
+L +LQ +
Sbjct: 175 FDRLGKLQTI 184
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Query: 112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANY 171
TKL L+L N L L++L L L NN L +L L +G N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 172 LEDPDPVKFKGMASLTDLWLDYNLLEKFPS-FIAECSKLMFLDLSDNLIMGHIPIEQLTH 230
L+ F + L +L L+ N L+ P+ + + L L LS N + +P
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDR 177
Query: 231 LENLEYLNLTKNSFE 245
L L+ + L N F+
Sbjct: 178 LGKLQTITLFGNQFD 192
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 75/194 (38%), Gaps = 17/194 (8%)
Query: 178 VKFKGMASLTDLWLDYNLLEKF-PSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
F+ +LT LWL N+L + + + L LDLSDN + + L L
Sbjct: 49 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 108
Query: 237 LNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFH-------- 288
L+L + + P + L++L L N L D L NL L H
Sbjct: 109 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 168
Query: 289 ENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSL 348
E F GL + A ++ ++LG L L L NNL+ +L
Sbjct: 169 ERAFRGL-----HSLDRLLLHQNRVAHVHPHAFRDLG---RLMTLYLFANNLSALPTEAL 220
Query: 349 ASLRQISELGISNN 362
A LR + L +++N
Sbjct: 221 APLRALQYLRLNDN 234
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 535 LGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDI 594
+GI Q I L N++S V +++ C NL+ + N + A L L+ LD+
Sbjct: 27 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 86
Query: 595 FDN-QLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYL 640
DN QL PA L L+L R L + P L+ LQYL
Sbjct: 87 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 133
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 3/174 (1%)
Query: 105 PAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWL 164
PA +L L L L P L+ L+ L L +N+L +L N
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 165 LRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKF-PSFIAECSKLMFLDLSDNLIMGHI 223
L + N + F+G+ SL L L N + P + +LM L L N + +
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-L 215
Query: 224 PIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIG 277
P E L L L+YL L N + + R + L+ + +++ ++P +
Sbjct: 216 PTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLA 268
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 40/100 (40%)
Query: 541 LQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT 600
LQY+ L DN L + + NL++ + GNRI L L L + N++
Sbjct: 130 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 189
Query: 601 GKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYL 640
P L+ L L N LS + L LQYL
Sbjct: 190 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 229
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 17/106 (16%)
Query: 327 CANLTFLELSINNLTGSLPLSLASLRQISELGISNNQ------------LSEIISLQLQM 374
C NLT L L N L + L + +L +S+N L + +L L
Sbjct: 54 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 113
Query: 375 NDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIP----QQIGNLTNLF 416
L P L L+YLYL DN +P + +GNLT+LF
Sbjct: 114 CGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLF 158
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 75/194 (38%), Gaps = 17/194 (8%)
Query: 178 VKFKGMASLTDLWLDYNLLEKF-PSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
F+ +LT LWL N+L + + + L LDLSDN + + L L
Sbjct: 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109
Query: 237 LNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFH-------- 288
L+L + + P + L++L L N L D L NL L H
Sbjct: 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169
Query: 289 ENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSL 348
E F GL + A ++ ++LG L L L NNL+ +L
Sbjct: 170 ERAFRGL-----HSLDRLLLHQNRVAHVHPHAFRDLG---RLMTLYLFANNLSALPTEAL 221
Query: 349 ASLRQISELGISNN 362
A LR + L +++N
Sbjct: 222 APLRALQYLRLNDN 235
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 535 LGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDI 594
+GI Q I L N++S V +++ C NL+ + N + A L L+ LD+
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 595 FDN-QLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYL 640
DN QL PA L L+L R L + P L+ LQYL
Sbjct: 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 3/174 (1%)
Query: 105 PAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWL 164
PA +L L L L P L+ L+ L L +N+L +L N
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 165 LRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKF-PSFIAECSKLMFLDLSDNLIMGHI 223
L + N + F+G+ SL L L N + P + +LM L L N + +
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-L 216
Query: 224 PIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIG 277
P E L L L+YL L N + + R + L+ + +++ ++P +
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLA 269
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 40/100 (40%)
Query: 541 LQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT 600
LQY+ L DN L + + NL++ + GNRI L L L + N++
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
Query: 601 GKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYL 640
P L+ L L N LS + L LQYL
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 17/106 (16%)
Query: 327 CANLTFLELSINNLTGSLPLSLASLRQISELGISNNQ------------LSEIISLQLQM 374
C NLT L L N L + L + +L +S+N L + +L L
Sbjct: 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114
Query: 375 NDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIP----QQIGNLTNLF 416
L P L L+YLYL DN +P + +GNLT+LF
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLF 159
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 533 NALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKG---GIPAELGNLTYL 589
+AL +L Y+ L NQL + + K TNL + N+++ G+ +L NLTYL
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 590 QNLDIFDNQLTGKIPAQLF-RSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYL 640
++ NQL +P +F + + L RL+L NQL KL++L+ L
Sbjct: 139 Y---LYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQL 186
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 528 DGDITNALGIY--PDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGN 585
+ DI + GI P+++Y+ LG N+L + S + TNL+ ++GN+++
Sbjct: 50 NSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDK 107
Query: 586 LTYLQNLDIFDNQLTGKIPAQLF-RSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
LT L+ L + +NQL +P +F + + L L L NQL KL+ L LD
Sbjct: 108 LTNLKELVLVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLD 163
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 4/165 (2%)
Query: 477 NNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALG 536
NN K GI N+ YL NKL +L T LT + L N+L
Sbjct: 49 NNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFD 106
Query: 537 IYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFD 596
+L+ + L +NQL + + K TNL+ + N+++ LT L LD+ +
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDN 166
Query: 597 NQLTGKIPAQLF-RSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYL 640
NQL +P +F + + L +L+L NQL +L+ L ++
Sbjct: 167 NQLQS-LPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHI 210
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 13/89 (14%)
Query: 111 ATKLILLDLSSNNLTNPI----PPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLR 166
A +++L+LSSN LT + PP++ +VL L+NN + IP +++LQ L
Sbjct: 427 AESILVLNLSSNMLTGSVFRCLPPKV------KVLDLHNNRIMS-IPKDVTHLQALQELN 479
Query: 167 IGANYLED-PDPVKFKGMASLTDLWLDYN 194
+ +N L+ PD V F + SL +WL N
Sbjct: 480 VASNQLKSVPDGV-FDRLTSLQYIWLHDN 507
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 104 IPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAW 163
+P + TK L LS N+++ P+I +LS+LRVL L +N + H Q+
Sbjct: 46 VPKDLPPRTKA--LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103
Query: 164 LLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSF--IAECSKLMFLDLS 215
L + N L++ + MASL L L +N + P +KL FL LS
Sbjct: 104 YLDVSHNRLQN---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 545 DLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAE-LGNLTYLQNLDIFDNQLT 600
+L +N++SG L KC NL + +SGN+IK E L L L++LD+F+ ++T
Sbjct: 75 ELSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 131
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 488 CRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLG 547
CRG L + N +PE++ T +RLEQN + A Y L+ IDL
Sbjct: 18 CRGKGLTEIPTN-------LPETI------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLS 64
Query: 548 DNQLSGVLTSNWGKCTNLSNFRISGNRI 575
+NQ+S + + +L++ + GN+I
Sbjct: 65 NNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 488 CRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLG 547
CRG L + N +PE++ T +RLEQN + A Y L+ IDL
Sbjct: 18 CRGKGLTEIPTN-------LPETI------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLS 64
Query: 548 DNQLSGVLTSNWGKCTNLSNFRISGNRI 575
+NQ+S + + +L++ + GN+I
Sbjct: 65 NNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 14/154 (9%)
Query: 156 LSNLQNAWLLRIGANYLEDPD--PVKFKGMASLTDLWLDYNL-LEKFPSFIAECSKLMFL 212
L L N L + N +E D ++ K ++ L L L +N L EC +L L
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELL 402
Query: 213 DLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT-GT 271
DL+ + + P +L L+ LNLT + + P LRHL L N GT
Sbjct: 403 DLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGT 462
Query: 272 IPD----------EIGLLSNLEILEFHENLFHGL 295
I E+ +LS+ +L + FH L
Sbjct: 463 ITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSL 496
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 13/86 (15%)
Query: 114 LILLDLSSNNLTNPI----PPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGA 169
L+ L++SSN LT+ I PP I +VL L++N + IP Q+ L+ L + +
Sbjct: 401 LLSLNMSSNILTDTIFRCLPPRI------KVLDLHSNKIKS-IPKQVVKLEALQELNVAS 453
Query: 170 NYLED-PDPVKFKGMASLTDLWLDYN 194
N L+ PD + F + SL +WL N
Sbjct: 454 NQLKSVPDGI-FDRLTSLQKIWLHTN 478
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 16/138 (11%)
Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLT-----GQIPHQLSNLQNAWLLRIGANY 171
LD S+N LT+ + G+L++L L+L N L ++ Q+ +LQ + + +Y
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 172 LEDPDPVKFKGMASLTDLWLDYNLLEK-FPSFIAEC--SKLMFLDLSDNLIMGHIPIEQL 228
E KG S T L N+ I C ++ LDL N I IP +Q+
Sbjct: 389 DEK------KGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IP-KQV 440
Query: 229 THLENLEYLNLTKNSFEG 246
LE L+ LN+ N +
Sbjct: 441 VKLEALQELNVASNQLKS 458
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 538 YPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDN 597
+P+LQ +DL ++ + + ++LS ++GN I+ L+ LQ L +
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALET 112
Query: 598 QLTGKIPAQLFRSSFLIRLNLRRNQL-SDKIPAEIGKLSRLQYLD 641
L + L LN+ N + S K+P L+ L++LD
Sbjct: 113 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 180 FKGMASLTDL-WLDYNL--LEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
F G++SL L L+ NL LE FP I L L+++ NLI E ++L NLE+
Sbjct: 98 FSGLSSLQKLVALETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 155
Query: 237 LNLTKNSFEG 246
L+L+ N +
Sbjct: 156 LDLSSNKIQS 165
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 191 LDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPR 250
L +N L+ P L LD+S N + +P+ L L L+ L L N + P
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 251 EIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 290
+ PKL L L N+LT + L NL+ L EN
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 483 LPPGICRGGNLIYLTANV---NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYP 539
LPP + + +++L+ N+ L +P + L R L + ++DG + P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL-------P 77
Query: 540 DLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQL 599
L +DL NQL L L+ +S NR+ L L LQ L + N+L
Sbjct: 78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 600 TGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
P L + L +L+L NQL++ +PA G L+ L+ LD
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTE-LPA--GLLNGLENLD 175
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 191 LDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPR 250
L +N L+ P L LD+S N + +P+ L L L+ L L N + P
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 251 EIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 290
+ PKL L L N+LT + L NL+ L EN
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 483 LPPGICRGGNLIYLTANV---NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYP 539
LPP + + +++L+ N+ L +P + L R L + ++DG + P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL-------P 77
Query: 540 DLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQL 599
L +DL NQL L L+ +S NR+ L L LQ L + N+L
Sbjct: 78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 600 TGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
P L + L +L+L NQL++ +PA G L+ L+ LD
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTE-LPA--GLLNGLENLD 175
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 538 YPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDN 597
+P+LQ +DL ++ + + ++LS ++GN I+ L+ LQ L +
Sbjct: 52 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 111
Query: 598 QLTGKIPAQLFRSSFLIRLNLRRNQL-SDKIPAEIGKLSRLQYLD 641
L + L LN+ N + S K+P L+ L++LD
Sbjct: 112 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 180 FKGMASLTDL-WLDYNL--LEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
F G++SL L ++ NL LE FP I L L+++ NLI E ++L NLE+
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 154
Query: 237 LNLTKNSFEG 246
L+L+ N +
Sbjct: 155 LDLSSNKIQS 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 538 YPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDN 597
+P+LQ +DL ++ + + ++LS ++GN I+ L+ LQ L +
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 112
Query: 598 QLTGKIPAQLFRSSFLIRLNLRRNQL-SDKIPAEIGKLSRLQYLD 641
L + L LN+ N + S K+P L+ L++LD
Sbjct: 113 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 180 FKGMASLTDL-WLDYNL--LEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
F G++SL L ++ NL LE FP I L L+++ NLI E ++L NLE+
Sbjct: 98 FSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 155
Query: 237 LNLTKNSFEG 246
L+L+ N +
Sbjct: 156 LDLSSNKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 538 YPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDN 597
+P+LQ +DL ++ + + ++LS ++GN I+ L+ LQ L +
Sbjct: 52 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 111
Query: 598 QLTGKIPAQLFRSSFLIRLNLRRNQL-SDKIPAEIGKLSRLQYLD 641
L + L LN+ N + S K+P L+ L++LD
Sbjct: 112 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 180 FKGMASLTDL-WLDYNL--LEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
F G++SL L ++ NL LE FP I L L+++ NLI E ++L NLE+
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 154
Query: 237 LNLTKNSFEG 246
L+L+ N +
Sbjct: 155 LDLSSNKIQS 164
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 538 YPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDN 597
+P+LQ +DL ++ + + ++LS ++GN I+ L+ LQ L +
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 598 QLTGKIPAQLFRSSFLIRLNLRRNQL-SDKIPAEIGKLSRLQYLD 641
L + L LN+ N + S K+P L+ L++LD
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 180 FKGMASLTDL-WLDYNL--LEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
F G++SL L ++ NL LE FP I L L+++ NLI E ++L NLE+
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153
Query: 237 LNLTKNSFEG 246
L+L+ N +
Sbjct: 154 LDLSSNKIQS 163
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 191 LDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPR 250
L +N L+ P L LD+S N + +P+ L L L+ L L N + P
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 251 EIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 290
+ PKL L L N+LT + L NL+ L EN
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 483 LPPGICRGGNLIYLTANV---NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYP 539
LPP + + +++L+ N+ L +P + L R L + ++DG + P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL-------P 77
Query: 540 DLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQL 599
L +DL NQL L L+ +S NR+ L L LQ L + N+L
Sbjct: 78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 600 TGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
P L + L +L+L NQL++ +PA G L+ L+ LD
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTE-LPA--GLLNGLENLD 175
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 538 YPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDN 597
+P+LQ +DL ++ + + ++LS ++GN I+ L+ LQ L +
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 598 QLTGKIPAQLFRSSFLIRLNLRRNQL-SDKIPAEIGKLSRLQYLD 641
L + L LN+ N + S K+P L+ L++LD
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 180 FKGMASLTDL-WLDYNL--LEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
F G++SL L ++ NL LE FP I L L+++ NLI E ++L NLE+
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153
Query: 237 LNLTKNSFEGEIPREIKTFPKL 258
L+L+ N + +++ ++
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQM 175
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 191 LDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPR 250
L +N L+ P L LD+S N + +P+ L L L+ L L N + P
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 251 EIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 290
+ PKL L L N+LT + L NL+ L EN
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 483 LPPGICRGGNLIYLTANV---NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYP 539
LPP + + +++L+ N+ L +P + L R L + ++DG + P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL-------P 77
Query: 540 DLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQL 599
L +DL NQL L L+ +S NR+ L L LQ L + N+L
Sbjct: 78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 600 TGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
P L + L +L+L NQL++ +PA G L+ L+ LD
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTE-LPA--GLLNGLENLD 175
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 191 LDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPR 250
L +N L+ P L LD+S N + +P+ L L L+ L L N + P
Sbjct: 85 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 143
Query: 251 EIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 290
+ PKL L L N LT + L NL+ L EN
Sbjct: 144 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 183
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 483 LPPGICRGGNLIYLTANV---NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYP 539
LPP + + +++L+ N+ L +P + L R L + ++DG + P
Sbjct: 26 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL-------P 78
Query: 540 DLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQL 599
L +DL NQL L L+ +S NR+ L L LQ L + N+L
Sbjct: 79 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 137
Query: 600 TGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
P L + L +L+L N L++ +PA G L+ L+ LD
Sbjct: 138 KTLPPGLLTPTPKLEKLSLANNNLTE-LPA--GLLNGLENLD 176
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 538 YPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDN 597
+P+LQ +DL ++ + + ++LS ++GN I+ L+ LQ L +
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 598 QLTGKIPAQLFRSSFLIRLNLRRNQL-SDKIPAEIGKLSRLQYLD 641
L + L LN+ N + S K+P L+ L++LD
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 180 FKGMASLTDL-WLDYNL--LEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
F G++SL L ++ NL LE FP I L L+++ NLI E ++L NLE+
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153
Query: 237 LNLTKNSFEGEIPREIKTFPKL 258
L+L+ N + +++ ++
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQM 175
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 101 VGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQ 160
+ S+PAGI T L L++N +T P +L +L+ L +N LT L
Sbjct: 24 LASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT 81
Query: 161 NAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFL 212
L + N+L+ F + SLT ++L N + EC +M+L
Sbjct: 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD------CECRDIMYL 127
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 191 LDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPR 250
L +N L+ P L LD+S N + +P+ L L L+ L L N + P
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 251 EIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 290
+ PKL L L N LT + L NL+ L EN
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 483 LPPGICRGGNLIYLTANV---NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYP 539
LPP + + +++L+ N+ L +P + L R L + ++DG + P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL-------P 77
Query: 540 DLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQL 599
L +DL NQL L L+ +S NR+ L L LQ L + N+L
Sbjct: 78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 600 TGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
P L + L +L+L N L++ +PA G L+ L+ LD
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTE-LPA--GLLNGLENLD 175
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 191 LDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPR 250
L +N L+ P L LD+S N + +P+ L L L+ L L N + P
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 251 EIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 290
+ PKL L L N LT + L NL+ L EN
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 483 LPPGICRGGNLIYLTANV---NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYP 539
LPP + + +++L+ N+ L +P + L R L + ++DG + P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL-------P 77
Query: 540 DLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQL 599
L +DL NQL L L+ +S NR+ L L LQ L + N+L
Sbjct: 78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 600 TGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
P L + L +L+L N L++ +PA G L+ L+ LD
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTE-LPA--GLLNGLENLD 175
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 191 LDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPR 250
L +N L+ P L LD+S N + +P+ L L L+ L L N + P
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 251 EIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 290
+ PKL L L N LT + L NL+ L EN
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 483 LPPGICRGGNLIYLTANV---NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYP 539
LPP + + +++L+ N+ L +P + L R L + ++DG + P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL-------P 77
Query: 540 DLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQL 599
L +DL NQL L L+ +S NR+ L L LQ L + N+L
Sbjct: 78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 600 TGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
P L + L +L+L N L++ +PA G L+ L+ LD
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTE-LPA--GLLNGLENLD 175
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 207 SKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQN 266
+ L+ L+LS N +G I +L+ LE L+L+ N + P L+ L L N
Sbjct: 323 THLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 267 KLTGTIPDEI-GLLSNLEILEFHEN 290
+L ++PD I L++L+ + H N
Sbjct: 382 QLK-SVPDGIFDRLTSLQKIWLHTN 405
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 191 LDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPR 250
L +N L+ P L LD+S N + +P+ L L L+ L L N + P
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 251 EIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 290
+ PKL L L N LT + L NL+ L EN
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 483 LPPGICRGGNLIYLTANV---NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYP 539
LPP + + +++L+ N+ L +P + L R L + ++DG + P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL-------P 77
Query: 540 DLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQL 599
L +DL NQL L L+ +S NR+ L L LQ L + N+L
Sbjct: 78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 600 TGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
P L + L +L+L N L++ +PA G L+ L+ LD
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTE-LPA--GLLNGLENLD 175
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 191 LDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPR 250
L +N L+ P L LD+S N + +P+ L L L+ L L N + P
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 251 EIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 290
+ PKL L L N LT + L NL+ L EN
Sbjct: 143 LLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQEN 182
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 483 LPPGICRGGNLIYLTANV---NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYP 539
LPP + + +++L+ N+ L +P + L R L + ++DG + P
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL-------P 77
Query: 540 DLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQL 599
L +DL NQL L L+ +S NR+ L L LQ L + N+L
Sbjct: 78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 600 TGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
P L + L +L+L N L++ +PA G L+ L+ LD
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNDLTE-LPA--GLLNGLENLD 175
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 209 LMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREI-KTFPKLRHLKLGQNK 267
L L+L N+ +P LENLE + N ++PR I PKL+ L L N+
Sbjct: 149 LSHLELRANI--EEMPSHLFDDLENLESIEFGSNKLR-QMPRGIFGKMPKLKQLNLASNQ 205
Query: 268 LTGTIPDEI-GLLSNLEILEFHENLFHGLIP 297
L ++PD I L++L+ + H N + P
Sbjct: 206 LK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 235
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 13/159 (8%)
Query: 209 LMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKL 268
L+ L+L DN I P++ LT + LE L+ N + I ++ L L ++
Sbjct: 65 LIGLELKDNQITDLAPLKNLTKITELE---LSGNPLKNV--SAIAGLQSIKTLDLTSTQI 119
Query: 269 TGTIPDEIGLLSNLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCA 328
T P + LSNL++L N + P +A ++ P L +
Sbjct: 120 TDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLS 173
Query: 329 NLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEI 367
LT L+ N ++ PL ASL + E+ + NNQ+S++
Sbjct: 174 KLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQISDV 210
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 530 DITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYL 589
D+T G+ +LQ + L NQ++ + S TNL I ++ P L NL+ L
Sbjct: 121 DVTPLAGLS-NLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKL 175
Query: 590 QNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIP 628
L DN+++ P L LI ++L+ NQ+SD P
Sbjct: 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 536 GIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIF 595
G+ P L + L N+++ V ++ NL+ +S N I L N +L+ L +
Sbjct: 189 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248
Query: 596 DNQLTGKIPAQLFRSSFLIRLNLRRNQLS 624
+N+L K+P L ++ + L N +S
Sbjct: 249 NNKLV-KVPGGLADHKYIQVVYLHNNNIS 276
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 539 PDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQ 598
PD +DL +N+++ + ++ NL + N+I P L L+ L + NQ
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 599 LTGKIPAQLFRSSFLIRLNLRRNQLS 624
L ++P ++ ++ L L + N+++
Sbjct: 112 LK-ELPEKMPKT--LQELRVHENEIT 134
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 536 GIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIF 595
G+ P L + L N+++ V ++ NL+ +S N I L N +L+ L +
Sbjct: 189 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248
Query: 596 DNQLTGKIPAQLFRSSFLIRLNLRRNQLS 624
+N+L K+P L ++ + L N +S
Sbjct: 249 NNKLV-KVPGGLADHKYIQVVYLHNNNIS 276
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 539 PDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQ 598
PD +DL +N+++ + ++ NL + N+I P L L+ L + NQ
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 599 LTGKIPAQLFRSSFLIRLNLRRNQLS 624
L ++P ++ ++ L L + N+++
Sbjct: 112 LK-ELPEKMPKT--LQELRVHENEIT 134
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 575 IKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEI-GK 633
+ GIP T Q L ++DNQ+T P R + L RL+L NQL+ +PA + K
Sbjct: 24 VPTGIP------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDK 76
Query: 634 LSRLQYL 640
L++L L
Sbjct: 77 LTQLTQL 83
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
Query: 101 VGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQ 160
+ S+P GI T+++ L N +T P L+ L L L NN LT L
Sbjct: 21 LASVPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 161 NAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFL 212
L + N L+ F + SLT +WL N + CS +++L
Sbjct: 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN------PWDCACSDILYL 124
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 53/130 (40%), Gaps = 7/130 (5%)
Query: 157 SNLQNAWLLRIGANYLEDPDPVKFKGMA--SLTDLWLDYNLLEKFPSFIAEC-SKLMFLD 213
S +Q+ WL ED P F+G+ S+ + L + S C S L LD
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284
Query: 214 LSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIP 273
L+ + +P L L L+ L L+ N FE FP L HL + N T +
Sbjct: 285 LTAT-HLSELP-SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN--TKRLE 340
Query: 274 DEIGLLSNLE 283
G L NLE
Sbjct: 341 LGTGCLENLE 350
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 575 IKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEI-GK 633
+ GIP T Q L ++DNQ+T P R + L RL+L NQL+ +PA + K
Sbjct: 32 VPTGIP------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDK 84
Query: 634 LSRLQYL 640
L++L L
Sbjct: 85 LTQLTQL 91
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
Query: 101 VGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQ 160
+ S+P GI T+++ L N +T P L+ L L L NN LT L
Sbjct: 29 LASVPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 86
Query: 161 NAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFL 212
L + N L+ F + SLT +WL N + CS +++L
Sbjct: 87 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD------CACSDILYL 132
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 73/186 (39%), Gaps = 33/186 (17%)
Query: 112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANY 171
T L LDLS NNL + YL LR L L N++ P L N L + +
Sbjct: 248 TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAF 307
Query: 172 LEDPDPVKFKGMASLTDL---WLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQ- 227
+ V ++ D WL Y L +L++ DN +IP +
Sbjct: 308 TK--QSVSLASHPNIDDFSFQWLKY---------------LEYLNMDDN----NIPSTKS 346
Query: 228 --LTHLENLEYLNLTKNSFEGEIPREIKTFPKLRH-----LKLGQNKLTGTIPDEIGLLS 280
T L +L+YL+L+K +F +TF L H L L +N ++ L
Sbjct: 347 NTFTGLVSLKYLSLSK-TFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLG 405
Query: 281 NLEILE 286
L IL+
Sbjct: 406 QLRILD 411
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 114/298 (38%), Gaps = 14/298 (4%)
Query: 136 SDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNL 195
S++ VL L +N L P + +L G N + +P + + L L L +N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 196 LEKFP--SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIK 253
L + +F+ C+ L LDL N I I + +NL L+L+ N
Sbjct: 85 LSQISDQTFVF-CTNLTELDLMSNSIHK-IKSNPFKNQKNLIKLDLSHNGLSSTKLGTGV 142
Query: 254 TFPKLRHLKLGQNKLTGTIPDEIGLLSN--LEILEFHENLFHGLIPSSXXXXXXXXXXXX 311
L+ L L +NK+ +E+ L N L L+ N P
Sbjct: 143 QLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLL 202
Query: 312 KSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQ 371
+A LN + ++L C L+ SI NL+ L+ L SE S + + + L
Sbjct: 203 NNAQLNPHLTEKL--CWELS--NTSIQNLS----LANNQLLATSESTFSGLKWTNLTQLD 254
Query: 372 LQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSI 429
L N+L LP L YL L N P+ L+NL L L F S+
Sbjct: 255 LSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSV 312
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 64/254 (25%)
Query: 130 PEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLED-PDPVKFKGMASLTD 188
PE+ S L+++ + NNSL ++P +L+ + G N LE+ P+ + + LT
Sbjct: 147 PELQNSSFLKIIDVDNNSL-KKLPDLPPSLE---FIAAGNNQLEELPE---LQNLPFLTA 199
Query: 189 LWLDYNLLEKFPSFIAECSKLMFLDLS-DNLIMGHIPIEQLTHLENLEYLN--LTKNSFE 245
++ D N L+K P L LS ++++ G+ +E+L L+NL +L N+
Sbjct: 200 IYADNNSLKKLPD----------LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL 249
Query: 246 GEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSXXXXXX 305
+P P L L + N LT +P+ L +L L+ EN+F GL
Sbjct: 250 KTLP---DLPPSLEALNVRDNYLTD-LPE---LPQSLTFLDVSENIFSGL---------- 292
Query: 306 XXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLTG--SLPLSLASLRQISELGISNNQ 363
S +P NL +L S N + LP SL EL +SNN+
Sbjct: 293 ------------SELP------PNLYYLNASSNEIRSLCDLPPSL------EELNVSNNK 328
Query: 364 LSEIISLQLQMNDL 377
L E+ +L ++ L
Sbjct: 329 LIELPALPPRLERL 342
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Query: 248 IPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSXXXXXXXX 307
+P I T +L L LG+N++ DE +LE LE +EN+ + P +
Sbjct: 26 VPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83
Query: 308 XXXXKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEI 367
+S L +NLT L++S N + L L + L + +N L I
Sbjct: 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 500 VNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNW 559
+N + GP+ LT ++L+ N L T L YP L +DL N+L ++ +
Sbjct: 217 INVVRGPVN------VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 268
Query: 560 GKCTNLSNFRISGNRI 575
K L IS NR+
Sbjct: 269 VKMQRLERLYISNNRL 284
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 39/129 (30%)
Query: 165 LRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLD---LSDNLIMG 221
L + N + D P+K + L +L ++ N L+ + C +FLD L D
Sbjct: 68 LHLSHNQISDLSPLK--DLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRD----- 120
Query: 222 HIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSN 281
+ L HL+NLE L++ N KL+ + + +G LS
Sbjct: 121 ---TDSLIHLKNLEILSIRNN--------------KLKSIVM------------LGFLSK 151
Query: 282 LEILEFHEN 290
LE+L+ H N
Sbjct: 152 LEVLDLHGN 160
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 573 NRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLF-RSSFLIRLNLRRNQL 623
NRI P LT L LD+ +NQLT +PA +F + + L +L+L NQL
Sbjct: 40 NRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQL 90
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
Query: 101 VGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQ 160
+ S+P GI T+++ L N +T P L+ L L L NN LT L
Sbjct: 21 LASVPTGIPTTTQVLYL--YDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 161 NAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFL 212
L + N L+ F + SLT +WL N + CS +++L
Sbjct: 79 QLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWD------CACSDILYL 124
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 148 LTGQIP------HQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS 201
L G IP LS L+ L + N +E GM +L L L NL++K +
Sbjct: 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN 87
Query: 202 FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHL 261
A L L +S N I IE+L +L L Y++ K + GEI + + KL L
Sbjct: 88 LDAVADTLEELWISYNQIASLSGIEKLVNLRVL-YMSNNKITNWGEIDK-LAALDKLEDL 145
Query: 262 KLGQNKL 268
L N L
Sbjct: 146 LLAGNPL 152
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 148 LTGQIP------HQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS 201
L G IP LS L+ L + N +E GM +L L L NL++K +
Sbjct: 31 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN 88
Query: 202 FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHL 261
A L L +S N I IE+L +L L Y++ K + GEI + + KL L
Sbjct: 89 LDAVADTLEELWISYNQIASLSGIEKLVNLRVL-YMSNNKITNWGEIDK-LAALDKLEDL 146
Query: 262 KLGQNKL 268
L N L
Sbjct: 147 LLAGNPL 153
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 106/275 (38%), Gaps = 63/275 (22%)
Query: 161 NAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSK-------LMFLD 213
+A L + +N L+ F + LT L L N L SF CS+ L +LD
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL----SFKGCCSQSDFGTTSLKYLD 84
Query: 214 LSDNLIM----GHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT 269
LS N ++ + +EQL HL+ ++ NL + S E F LR+L T
Sbjct: 85 LSFNGVITMSSNFLGLEQLEHLD-FQHSNLKQMS-------EFSVFLSLRNLIYLDISHT 136
Query: 270 GTIPDEIGL---LSNLEILEFHENLFH-GLIPSSXXXXXXXXXXXXKSAGLNSSIPKELG 325
T G+ LS+LE+L+ N F +P I EL
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD---------------------IFTEL- 174
Query: 326 FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQ-----------LSEIISLQLQM 374
NLTFL+LS L P + SL + L +S+N L+ + L +
Sbjct: 175 --RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232
Query: 375 NDLSGKLPPEIGLLP-KLEYLYLFDNKFSGPIPQQ 408
N + E+ P L +L L N F+ Q
Sbjct: 233 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 201 SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN-SFEGEIPREIKTFPKLR 259
+ + C L+ LDLSD++++ + ++ L L++L+L++ E E+ P L+
Sbjct: 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 275
Query: 260 HLKLGQNKLTGTIPD 274
L ++ G +PD
Sbjct: 276 TL-----QVFGIVPD 285
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 25/148 (16%)
Query: 107 GIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLR 166
GI L L+LS+N +T+ P I YL ++ L L N LT P L+NL+N L
Sbjct: 61 GIQYLPNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLF 116
Query: 167 IGANYLED--------------------PDPVKFKGMASLTDLWLDYNLLEKFPSFIAEC 206
+ N ++D D + L L+L N + + ++
Sbjct: 117 LDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRL 175
Query: 207 SKLMFLDLSDNLIMGHIPIEQLTHLENL 234
+KL L L DN I +P+ LT L+NL
Sbjct: 176 TKLDTLSLEDNQISDIVPLAGLTKLQNL 203
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 97/267 (36%), Gaps = 53/267 (19%)
Query: 104 IPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN----SLTGQIPHQLSNL 159
+P+GI L L L++N+ LR L + N L + +L NL
Sbjct: 292 LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENL 351
Query: 160 QNAWLLRIGANYLEDPDP--VKFKGMASLTDLWLDYNL-LEKFPSFIAECSKLMFLDLSD 216
Q L + + +E D ++ K + L L L YN L EC +L LD++
Sbjct: 352 QK---LDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAF 408
Query: 217 NLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT-GTIPD- 274
+ P +L L LNL+ + + LRHL L N G+I
Sbjct: 409 THLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKT 468
Query: 275 ---------EIGLLSNLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELG 325
EI +LS+ +L + FHGL
Sbjct: 469 NLLQMVGSLEILILSSCNLLSIDQQAFHGL------------------------------ 498
Query: 326 FCANLTFLELSINNLTGSLPLSLASLR 352
N+ L+LS N+LTG +L+ L+
Sbjct: 499 --RNVNHLDLSHNSLTGDSMDALSHLK 523
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,456,763
Number of Sequences: 62578
Number of extensions: 709833
Number of successful extensions: 2133
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1232
Number of HSP's gapped (non-prelim): 535
length of query: 641
length of database: 14,973,337
effective HSP length: 105
effective length of query: 536
effective length of database: 8,402,647
effective search space: 4503818792
effective search space used: 4503818792
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)