Query 036117
Match_columns 641
No_of_seqs 464 out of 4181
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 09:35:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.2E-68 1.1E-72 613.6 46.5 579 19-625 26-609 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.6E-59 9.9E-64 539.1 38.0 520 88-630 69-590 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 6.5E-41 1.4E-45 315.1 -13.0 470 108-607 64-546 (565)
4 KOG0472 Leucine-rich repeat pr 100.0 9.1E-41 2E-45 314.1 -14.2 487 109-630 42-545 (565)
5 KOG4194 Membrane glycoprotein 100.0 2.8E-37 6.2E-42 303.4 8.7 366 89-476 79-448 (873)
6 KOG4194 Membrane glycoprotein 100.0 2E-36 4.2E-41 297.5 6.8 368 163-575 81-451 (873)
7 KOG0618 Serine/threonine phosp 100.0 2.2E-36 4.7E-41 312.8 -5.2 440 138-622 47-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 3.6E-35 7.7E-40 303.8 -6.1 477 117-641 3-482 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 4.2E-33 9.1E-38 276.0 -4.0 368 162-556 9-379 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 6.3E-33 1.4E-37 274.8 -4.1 365 63-449 7-374 (1255)
11 PLN03210 Resistant to P. syrin 99.9 7.7E-23 1.7E-27 237.2 31.3 347 154-527 552-905 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.2E-22 2.6E-27 235.7 31.5 340 176-550 550-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 2E-24 4.3E-29 204.0 -2.3 408 113-573 68-498 (498)
14 KOG4237 Extracellular matrix p 99.9 3.4E-24 7.4E-29 202.4 -4.1 277 89-365 68-359 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 1.1E-20 2.5E-25 203.2 17.2 264 281-607 202-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 4.5E-19 9.8E-24 191.0 17.8 265 112-457 201-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.7E-18 3.6E-23 187.9 13.8 246 305-600 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 4.3E-18 9.2E-23 184.8 13.5 279 280-615 178-461 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 1.6E-19 3.5E-24 182.6 2.2 211 408-623 76-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.2E-19 4.7E-24 181.6 0.8 240 384-626 18-293 (319)
21 KOG0617 Ras suppressor protein 99.7 4.5E-19 9.7E-24 148.8 -3.7 162 468-635 34-196 (264)
22 KOG0617 Ras suppressor protein 99.6 3.9E-18 8.4E-23 143.2 -4.3 158 83-245 28-186 (264)
23 PLN03150 hypothetical protein; 99.5 7.8E-14 1.7E-18 151.4 13.3 147 19-171 369-526 (623)
24 KOG0532 Leucine-rich repeat (L 99.2 6.5E-13 1.4E-17 132.5 -3.2 191 391-597 77-270 (722)
25 KOG0532 Leucine-rich repeat (L 99.2 6E-13 1.3E-17 132.7 -3.9 194 413-622 75-271 (722)
26 PLN03150 hypothetical protein; 99.1 1.1E-10 2.3E-15 127.0 8.9 106 517-622 420-526 (623)
27 KOG4658 Apoptotic ATPase [Sign 99.1 6E-11 1.3E-15 131.6 6.6 128 64-195 524-653 (889)
28 KOG1909 Ran GTPase-activating 99.1 7.9E-12 1.7E-16 117.9 -0.4 86 184-269 157-254 (382)
29 COG4886 Leucine-rich repeat (L 99.1 8.5E-11 1.8E-15 122.3 7.2 200 392-606 96-296 (394)
30 KOG1909 Ran GTPase-activating 99.1 3.8E-12 8.2E-17 120.0 -2.9 235 387-623 28-310 (382)
31 COG4886 Leucine-rich repeat (L 99.1 1.3E-10 2.7E-15 121.0 7.6 198 331-556 96-294 (394)
32 KOG1259 Nischarin, modulator o 99.1 2E-11 4.3E-16 112.5 1.3 136 486-627 279-415 (490)
33 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.3E-15 103.7 3.9 123 489-617 17-146 (175)
34 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.3E-15 103.7 3.9 126 84-214 15-147 (175)
35 KOG3207 Beta-tubulin folding c 99.0 3.8E-11 8.3E-16 116.4 -0.1 211 85-295 118-341 (505)
36 KOG3207 Beta-tubulin folding c 99.0 5.5E-11 1.2E-15 115.4 0.1 9 53-61 30-38 (505)
37 KOG1259 Nischarin, modulator o 99.0 7.7E-11 1.7E-15 108.6 1.0 59 540-600 353-412 (490)
38 KOG4658 Apoptotic ATPase [Sign 99.0 2.8E-10 6.2E-15 126.3 3.0 128 64-192 546-676 (889)
39 PF13855 LRR_8: Leucine rich r 98.7 5E-09 1.1E-13 76.3 2.7 59 540-598 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.7 1.2E-08 2.6E-13 74.3 3.2 61 515-575 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.7 2.5E-09 5.3E-14 111.5 -1.2 129 86-220 70-199 (414)
42 KOG0531 Protein phosphatase 1, 98.6 4.3E-09 9.4E-14 109.6 -0.9 129 302-450 70-199 (414)
43 KOG2120 SCF ubiquitin ligase, 98.6 2.1E-09 4.5E-14 99.3 -4.8 130 89-218 186-324 (419)
44 KOG2982 Uncharacterized conser 98.5 3.4E-08 7.5E-13 91.4 1.7 185 86-270 69-263 (418)
45 KOG2120 SCF ubiquitin ligase, 98.5 9E-10 1.9E-14 101.7 -8.9 158 182-341 208-376 (419)
46 KOG1859 Leucine-rich repeat pr 98.5 1.1E-09 2.4E-14 112.7 -9.9 126 468-600 165-292 (1096)
47 KOG4579 Leucine-rich repeat (L 98.4 9.1E-09 2E-13 84.1 -3.4 138 493-634 29-169 (177)
48 COG5238 RNA1 Ran GTPase-activa 98.3 2E-07 4.3E-12 85.3 2.0 87 183-269 156-255 (388)
49 KOG2982 Uncharacterized conser 98.3 1.4E-07 3E-12 87.5 0.8 85 390-480 46-134 (418)
50 PF08263 LRRNT_2: Leucine rich 98.3 9E-07 2E-11 58.7 4.4 40 20-60 1-43 (43)
51 COG5238 RNA1 Ran GTPase-activa 98.2 3.9E-07 8.4E-12 83.5 0.9 231 63-293 30-316 (388)
52 KOG1859 Leucine-rich repeat pr 98.1 3.3E-08 7.3E-13 102.1 -8.1 128 113-245 165-292 (1096)
53 KOG4341 F-box protein containi 97.9 2.3E-07 4.9E-12 90.2 -6.3 36 327-362 400-436 (483)
54 PRK15386 type III secretion pr 97.9 3.9E-05 8.5E-10 76.9 8.9 136 409-573 48-187 (426)
55 PRK15386 type III secretion pr 97.9 4.9E-05 1.1E-09 76.2 9.4 135 387-550 50-188 (426)
56 KOG3665 ZYG-1-like serine/thre 97.9 3.2E-06 7E-11 92.0 1.1 150 112-263 122-282 (699)
57 KOG1644 U2-associated snRNP A' 97.8 3.2E-05 7E-10 68.2 6.0 105 112-218 42-151 (233)
58 KOG4579 Leucine-rich repeat (L 97.8 1.1E-06 2.5E-11 72.0 -3.0 64 161-226 78-141 (177)
59 PF12799 LRR_4: Leucine Rich r 97.7 2.4E-05 5.2E-10 51.9 2.4 6 544-549 6-11 (44)
60 PF12799 LRR_4: Leucine Rich r 97.6 4E-05 8.7E-10 50.8 2.7 36 564-600 2-37 (44)
61 KOG4341 F-box protein containi 97.6 2E-06 4.3E-11 83.9 -5.5 294 89-419 139-458 (483)
62 KOG3665 ZYG-1-like serine/thre 97.6 5.2E-05 1.1E-09 82.8 3.9 134 136-270 122-264 (699)
63 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.5E-09 64.8 5.1 103 516-620 43-149 (233)
64 PF13306 LRR_5: Leucine rich r 97.2 0.00079 1.7E-08 57.5 6.5 84 82-168 6-89 (129)
65 PF13306 LRR_5: Leucine rich r 97.2 0.001 2.2E-08 56.8 6.4 99 154-258 29-128 (129)
66 KOG2739 Leucine-rich acidic nu 97.0 0.00044 9.5E-09 64.0 2.6 109 507-617 35-149 (260)
67 KOG2739 Leucine-rich acidic nu 96.8 0.00083 1.8E-08 62.2 2.5 39 110-148 63-103 (260)
68 KOG2123 Uncharacterized conser 96.7 6.7E-05 1.5E-09 69.4 -5.0 101 303-419 18-123 (388)
69 KOG1947 Leucine rich repeat pr 96.6 0.00033 7.1E-09 75.2 -1.9 110 183-292 187-307 (482)
70 KOG1947 Leucine rich repeat pr 96.4 0.00031 6.8E-09 75.4 -3.0 186 159-354 187-389 (482)
71 KOG2123 Uncharacterized conser 96.3 0.00011 2.3E-09 68.1 -6.4 86 59-149 15-101 (388)
72 PF00560 LRR_1: Leucine Rich R 95.3 0.0056 1.2E-07 33.6 0.4 17 589-606 2-18 (22)
73 PF00560 LRR_1: Leucine Rich R 94.8 0.01 2.3E-07 32.5 0.4 20 613-633 2-21 (22)
74 KOG4308 LRR-containing protein 94.2 0.00027 5.9E-09 73.8 -12.4 88 514-601 203-304 (478)
75 KOG4308 LRR-containing protein 92.5 0.00099 2.1E-08 69.7 -11.6 186 90-294 89-304 (478)
76 KOG3864 Uncharacterized conser 92.0 0.033 7.1E-07 49.8 -0.9 83 493-575 103-188 (221)
77 PF13504 LRR_7: Leucine rich r 91.4 0.11 2.3E-06 26.4 1.0 11 589-599 3-13 (17)
78 smart00370 LRR Leucine-rich re 88.8 0.37 8.1E-06 27.5 2.0 19 587-606 2-20 (26)
79 smart00369 LRR_TYP Leucine-ric 88.8 0.37 8.1E-06 27.5 2.0 19 587-606 2-20 (26)
80 PF13516 LRR_6: Leucine Rich r 88.4 0.13 2.9E-06 28.7 -0.0 16 539-554 2-17 (24)
81 KOG3864 Uncharacterized conser 86.1 0.11 2.4E-06 46.6 -2.0 83 516-598 102-187 (221)
82 KOG0473 Leucine-rich repeat pr 85.3 0.019 4E-07 52.3 -7.2 84 84-170 38-121 (326)
83 KOG0473 Leucine-rich repeat pr 85.1 0.025 5.4E-07 51.5 -6.5 90 511-603 38-127 (326)
84 smart00370 LRR Leucine-rich re 84.4 0.87 1.9E-05 25.9 2.0 14 539-552 2-15 (26)
85 smart00369 LRR_TYP Leucine-ric 84.4 0.87 1.9E-05 25.9 2.0 14 539-552 2-15 (26)
86 KOG4242 Predicted myosin-I-bin 66.6 34 0.00073 35.4 8.6 37 304-342 165-201 (553)
87 smart00365 LRR_SD22 Leucine-ri 65.9 4.9 0.00011 23.0 1.6 15 353-367 3-17 (26)
88 smart00368 LRR_RI Leucine rich 64.9 3.3 7.1E-05 24.1 0.8 15 539-553 2-16 (28)
89 smart00364 LRR_BAC Leucine-ric 63.2 5.2 0.00011 22.8 1.3 16 588-604 3-18 (26)
90 KOG3763 mRNA export factor TAP 40.5 9.8 0.00021 40.0 0.2 65 158-222 216-285 (585)
91 KOG4242 Predicted myosin-I-bin 40.4 34 0.00073 35.4 3.8 202 412-620 164-389 (553)
92 smart00367 LRR_CC Leucine-rich 36.9 25 0.00054 19.8 1.4 11 112-122 2-12 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.2e-68 Score=613.59 Aligned_cols=579 Identities=31% Similarity=0.496 Sum_probs=516.6
Q ss_pred CcHHHHHHHHHHHhcCCCCC--CCCCCCCCCCCCCccccceeeCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECC
Q 036117 19 SAQKEAKALLNWKSSLVSSS--LPSWTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLN 96 (641)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~~~--~~~W~~~~~~~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~ 96 (641)
..++|+.||++||+++..+. ..+|... .+||.|.|+.|+..++|+.|+++++++.+.++ ..|..+++|++|+|+
T Consensus 26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~---~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls 101 (968)
T PLN00113 26 LHAEELELLLSFKSSINDPLKYLSNWNSS---ADVCLWQGITCNNSSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLS 101 (968)
T ss_pred CCHHHHHHHHHHHHhCCCCcccCCCCCCC---CCCCcCcceecCCCCcEEEEEecCCCccccCC-hHHhCCCCCCEEECC
Confidence 36689999999999986443 6789654 68999999999988899999999999998887 789999999999999
Q ss_pred CCCCCccCchhcc-CCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCC
Q 036117 97 MNNLVGSIPAGIG-NATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDP 175 (641)
Q Consensus 97 ~n~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 175 (641)
+|.+.+.+|..+. .+++|++|++++|.+++.+|. +.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.
T Consensus 102 ~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 179 (968)
T PLN00113 102 NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179 (968)
T ss_pred CCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence 9999988887765 899999999999999988885 5689999999999999999999999999999999999999988
Q ss_pred CCcccCCCCCCCEEEcCCCCC-CCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCC
Q 036117 176 DPVKFKGMASLTDLWLDYNLL-EKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKT 254 (641)
Q Consensus 176 ~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 254 (641)
.+..+.++++|++|++++|.+ +.+|..+.++++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+.+|..+..
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhC
Confidence 899999999999999999998 5778999999999999999999988777654 89999999999999999899999999
Q ss_pred CCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEE
Q 036117 255 FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLE 334 (641)
Q Consensus 255 l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 334 (641)
+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|+
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 338 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEE
Confidence 99999999999999988898899999999999999999999999999999999999999999888888899999999999
Q ss_pred ccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCC
Q 036117 335 LSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTN 414 (641)
Q Consensus 335 l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 414 (641)
+++|.+.+.+|..+..+++|+.|++++ |.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++
T Consensus 339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~-------------n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 405 (968)
T PLN00113 339 LWSNKFSGEIPKNLGKHNNLTVLDLST-------------NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405 (968)
T ss_pred CcCCCCcCcCChHHhCCCCCcEEECCC-------------CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence 999999999999999888888888554 4555667888888899999999999999999999999999
Q ss_pred CCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCc
Q 036117 415 LFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLI 494 (641)
Q Consensus 415 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~ 494 (641)
|+.|++++|.+++.+|..+..+++|+.+++++|.+++.+|..+..++ +|+.|++++|++.+.+|..+ ..++|+
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~~L~L~~n~~~~~~p~~~-~~~~L~ 478 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP------SLQMLSLARNKFFGGLPDSF-GSKRLE 478 (968)
T ss_pred CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC------CCcEEECcCceeeeecCccc-ccccce
Confidence 99999999999988898899999999999999999988887777666 89999999999988888755 457899
Q ss_pred eEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCc
Q 036117 495 YLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNR 574 (641)
Q Consensus 495 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~ 574 (641)
.|++++|++.+.+|..+.++++|+.|++++|.+.+.+|..++.+++|++|+|++|.+++.+|..+..+++|+.|++++|+
T Consensus 479 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 558 (968)
T PLN00113 479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558 (968)
T ss_pred EEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc
Confidence 99999999999999888999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCC-Ccc
Q 036117 575 IKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQ-LSD 625 (641)
Q Consensus 575 l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~-l~~ 625 (641)
+.+.+|..+.++++|+.|++++|++.|.+|.. ..+..+....+.+|+ ++|
T Consensus 559 l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~ 609 (968)
T PLN00113 559 LSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCG 609 (968)
T ss_pred ccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccC
Confidence 99999999999999999999999999988864 334445555666776 444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.6e-59 Score=539.08 Aligned_cols=520 Identities=33% Similarity=0.540 Sum_probs=489.9
Q ss_pred CCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccC-CCCCCCEEEcccccCCCCCChhccCCCCCcEEE
Q 036117 88 PNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIG-YLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLR 166 (641)
Q Consensus 88 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 166 (641)
.+++.|++++|.+.+.++..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+++.+|. ..+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 4789999999999999999999999999999999999988888765 899999999999999988775 4689999999
Q ss_pred eccccCCCCCCcccCCCCCCCEEEcCCCCC-CCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccc
Q 036117 167 IGANYLEDPDPVKFKGMASLTDLWLDYNLL-EKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFE 245 (641)
Q Consensus 167 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 245 (641)
+++|.+.+..+..+..+++|++|++++|.+ +.+|..+.++++|++|++++|.+.+.+|.. +.++++|++|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC
Confidence 999999988899999999999999999998 678999999999999999999998887755 489999999999999999
Q ss_pred ccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCC
Q 036117 246 GEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELG 325 (641)
Q Consensus 246 ~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 325 (641)
+.+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCc
Q 036117 326 FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPI 405 (641)
Q Consensus 326 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~ 405 (641)
.+++|+.|++++|.+.+..|..+..+++|+.|++++ |.+.+.+|..++.+++|+.|++++|++++.+
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~-------------n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS-------------NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC-------------CCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence 999999999999999999999999999999998555 4555678888999999999999999999999
Q ss_pred hhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCc
Q 036117 406 PQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPP 485 (641)
Q Consensus 406 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 485 (641)
|.++..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..++ .|+.|++++|.+++.+|.
T Consensus 373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~------~L~~L~Ls~N~l~~~~~~ 446 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP------LVYFLDISNNNLQGRINS 446 (968)
T ss_pred ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC------CCCEEECcCCcccCccCh
Confidence 99999999999999999999999999999999999999999999999999998888 899999999999999999
Q ss_pred cccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCC
Q 036117 486 GICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNL 565 (641)
Q Consensus 486 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L 565 (641)
.+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++.+..|..+..+++|+.|++++|++.+.+|..+.++++|
T Consensus 447 ~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 525 (968)
T PLN00113 447 RKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525 (968)
T ss_pred hhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC
Confidence 99999999999999999999888765 45899999999999999999999999999999999999999999999999999
Q ss_pred CEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCccc
Q 036117 566 SNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAE 630 (641)
Q Consensus 566 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p~~ 630 (641)
++|++++|.+++.+|..++++++|+.|+|++|++++.+|..+..+++|+.+++++|+++|.+|..
T Consensus 526 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999964
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=6.5e-41 Score=315.09 Aligned_cols=470 Identities=26% Similarity=0.355 Sum_probs=295.0
Q ss_pred ccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCC
Q 036117 108 IGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLT 187 (641)
Q Consensus 108 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 187 (641)
+.++..|.+|++.+|.+. ..|.+++.+..++.++.++|+++ .+|..+..+.++..+++++|.+... ++.+..+..|+
T Consensus 64 l~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el-~~~i~~~~~l~ 140 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKEL-PDSIGRLLDLE 140 (565)
T ss_pred hhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeec-CchHHHHhhhh
Confidence 444444444444444444 33444444444444444444443 3444444444444444444443322 23344455555
Q ss_pred EEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCc
Q 036117 188 DLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNK 267 (641)
Q Consensus 188 ~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~ 267 (641)
.++..+|++.++|..++.+.++..+++.+|.+. ..++.... ++.|+++|+-.|.+. .+|..++.+.+|..|++.+|+
T Consensus 141 dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 141 DLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNK 217 (565)
T ss_pred hhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcc
Confidence 555566666667777777777777777777776 55555433 677777777776665 667777777777777777777
Q ss_pred CCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchh
Q 036117 268 LTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLS 347 (641)
Q Consensus 268 l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 347 (641)
+. ..| .|..+..|+++.++.|++.........+++++..||+++|++. ..|..+..+.+|+.||+++|.++ ..|..
T Consensus 218 i~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~s 293 (565)
T KOG0472|consen 218 IR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYS 293 (565)
T ss_pred cc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcc
Confidence 76 555 4777777777777777776544444557777777777777773 45666666777777777777777 56667
Q ss_pred hhcCCCCCeEeCCcccccccceeeccccc------ccc-cCCcCCCCCC--CCCEEEccCCcCcCCchhhhhCCCCCCeE
Q 036117 348 LASLRQISELGISNNQLSEIISLQLQMND------LSG-KLPPEIGLLP--KLEYLYLFDNKFSGPIPQQIGNLTNLFDL 418 (641)
Q Consensus 348 l~~~~~L~~L~l~~n~~~~l~~l~l~~~~------l~~-~~~~~l~~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 418 (641)
++++ .|+.|.+.+|+++.++.--++.-. +.. ...+.+.... +-...+ ...+..|+ .....+.+.|
T Consensus 294 Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t----~~~~~~~~-~~~~i~tkiL 367 (565)
T KOG0472|consen 294 LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT----LPSESFPD-IYAIITTKIL 367 (565)
T ss_pred cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC----CCCCcccc-hhhhhhhhhh
Confidence 7777 777777777777644321111100 000 0000000000 000000 00111111 2234566777
Q ss_pred ecccCcCCccCcccccCCC---CCCEEEccCCcCcccCCcchhcCCCCCCCCCcc-EEEccCCcccccCCccccCCCCCc
Q 036117 419 QLANNFFNGSIPSTIGNLS---SLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR-NVSFSYNNFSGKLPPGICRGGNLI 494 (641)
Q Consensus 419 ~l~~n~l~~~~~~~l~~l~---~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~-~L~ls~n~l~~~~~~~~~~~~~L~ 494 (641)
++++-+++ .+|.....-. -...+++++|++. ++|..+..+. .++ .+.++.|.+ +.+|..++.++.|.
T Consensus 368 ~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lk------elvT~l~lsnn~i-sfv~~~l~~l~kLt 438 (565)
T KOG0472|consen 368 DVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELK------ELVTDLVLSNNKI-SFVPLELSQLQKLT 438 (565)
T ss_pred cccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHH------HHHHHHHhhcCcc-ccchHHHHhhhcce
Confidence 77777776 4554433332 2667788888776 6666555444 333 344444444 36777788888888
Q ss_pred eEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCc
Q 036117 495 YLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNR 574 (641)
Q Consensus 495 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~ 574 (641)
.|++++|-+. .+|..+..+..|+.|+++.|+|. .+|.+...+..++.+-.++|++....|..++++..|+.||+.+|.
T Consensus 439 ~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd 516 (565)
T KOG0472|consen 439 FLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND 516 (565)
T ss_pred eeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence 8888877665 78888888888999999999887 677777777778888888899987777779999999999999999
Q ss_pred CcccCCccccCCCCCCEEeCCCCcCcccCCccc
Q 036117 575 IKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQL 607 (641)
Q Consensus 575 l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l 607 (641)
+. .+|..++++++|++|++++|+|. .|+..
T Consensus 517 lq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~~ 546 (565)
T KOG0472|consen 517 LQ-QIPPILGNMTNLRHLELDGNPFR--QPRHQ 546 (565)
T ss_pred hh-hCChhhccccceeEEEecCCccC--CCHHH
Confidence 97 88999999999999999999997 66543
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=9.1e-41 Score=314.10 Aligned_cols=487 Identities=27% Similarity=0.349 Sum_probs=392.4
Q ss_pred cCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCE
Q 036117 109 GNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTD 188 (641)
Q Consensus 109 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 188 (641)
..-.-++.+.+++|.+. .+-..+.++..|.+|++.+|+++ ..|.+++.+..++.++.++|++... +..+..+.+|++
T Consensus 42 W~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~l-p~~i~s~~~l~~ 118 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSEL-PEQIGSLISLVK 118 (565)
T ss_pred hhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhc-cHHHhhhhhhhh
Confidence 34456788999999988 55566889999999999999988 7788999999999999999998754 556788899999
Q ss_pred EEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcC
Q 036117 189 LWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKL 268 (641)
Q Consensus 189 L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l 268 (641)
+++++|.+..+++.++.+..+..++..+|++. .+|.+. ..+.++..+++.+|.+... |...-+++.|++++...|.+
T Consensus 119 l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~-~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 119 LDCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDM-VNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLL 195 (565)
T ss_pred hhccccceeecCchHHHHhhhhhhhccccccc-cCchHH-HHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhh
Confidence 99999999999999999999999999999998 677655 7888999999999999854 44444599999999999988
Q ss_pred CccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhh
Q 036117 269 TGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSL 348 (641)
Q Consensus 269 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l 348 (641)
. .+|..++.+.+|+.|++..|++.. .| .|.++..|+++++..|.+.-........++++.+||+.+|++. ..|+.+
T Consensus 196 ~-tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~ 271 (565)
T KOG0472|consen 196 E-TLPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI 271 (565)
T ss_pred h-cCChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHH
Confidence 7 888889999999999999999984 44 8899999999999999985443344558899999999999999 889999
Q ss_pred hcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhC-----CCCCCeE----e
Q 036117 349 ASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGN-----LTNLFDL----Q 419 (641)
Q Consensus 349 ~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L----~ 419 (641)
.-+++|..||+++|.++. +|..++++ .|+.|.+.+|.+...--+.+.. ++.|+.- .
T Consensus 272 clLrsL~rLDlSNN~is~--------------Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDISS--------------LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred HHhhhhhhhcccCCcccc--------------CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 999999999988887764 46788888 8999999999876432221111 1111110 0
Q ss_pred cccCc---CC-cc-Ccc---cccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCC
Q 036117 420 LANNF---FN-GS-IPS---TIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGG 491 (641)
Q Consensus 420 l~~n~---l~-~~-~~~---~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~ 491 (641)
++... -+ .. .+. ......+.+.|++++-+++ .+|+.+...... .-...++++.|++. ++|..+..+.
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~---~~Vt~VnfskNqL~-elPk~L~~lk 411 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKS---EIVTSVNFSKNQLC-ELPKRLVELK 411 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhh---cceEEEecccchHh-hhhhhhHHHH
Confidence 11110 00 01 111 1223457788999998887 778776654410 12788999999997 8898887777
Q ss_pred CCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCc
Q 036117 492 NLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRIS 571 (641)
Q Consensus 492 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 571 (641)
.+.+.-+..++..+.+|..+..+++|+.|++++|.+. .+|..++.+..|+.||+|.|+|. .+|+++..+..++.+-.+
T Consensus 412 elvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas 489 (565)
T KOG0472|consen 412 ELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLAS 489 (565)
T ss_pred HHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhc
Confidence 7655545555555588888999999999999999887 68888899999999999999988 778888888888888888
Q ss_pred CCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCccc
Q 036117 572 GNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAE 630 (641)
Q Consensus 572 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p~~ 630 (641)
+|++....|+++.++..|..|||.+|++. .||..+++|++|++|++++|+++ .|..
T Consensus 490 ~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 490 NNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred cccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence 89998777777999999999999999998 89999999999999999999997 5543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-37 Score=303.37 Aligned_cols=366 Identities=23% Similarity=0.260 Sum_probs=313.3
Q ss_pred CCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEec
Q 036117 89 NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIG 168 (641)
Q Consensus 89 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 168 (641)
.-++||+++|++...-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+..-.+.++.++.|+.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 4567999999999888888999999999999999999 788876667789999999999998888899999999999999
Q ss_pred cccCCCCCCcccCCCCCCCEEEcCCCCCCCCc-hhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccccc
Q 036117 169 ANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP-SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGE 247 (641)
Q Consensus 169 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 247 (641)
.|.++.+....|..-.++++|+|++|.|+.+. ..|..+.+|..|.|+.|.++ .+|...|.++++|+.|+|..|++.-.
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeee
Confidence 99999999999999999999999999998885 46888889999999999998 88989999999999999999998744
Q ss_pred CCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCC
Q 036117 248 IPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFC 327 (641)
Q Consensus 248 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 327 (641)
-.-.|..+++|+.|.+.+|++...-...|..+.++++|++..|++...-..++.++++|+.|++++|.|....+..+..+
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 35578899999999999999986666667889999999999999998888899999999999999999998888899999
Q ss_pred CCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchh
Q 036117 328 ANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQ 407 (641)
Q Consensus 328 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~ 407 (641)
++|++|+++.|+++...+..+..+..|++|++++|.+..+.. ..|..+.+|++|||++|.+++.+.+
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e-------------~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE-------------GAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh-------------hHHHHhhhhhhhcCcCCeEEEEEec
Confidence 999999999999998888899999999999999998876532 3455677888888888877765443
Q ss_pred ---hhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccC
Q 036117 408 ---QIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSY 476 (641)
Q Consensus 408 ---~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~ 476 (641)
.|.++++|+.|++.+|++....-..|..++.|++||+.+|.+...-|..|..+. |++|.+..
T Consensus 384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~-------Lk~Lv~nS 448 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPME-------LKELVMNS 448 (873)
T ss_pred chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccch-------hhhhhhcc
Confidence 466788888888888888754456788888888888888888766666555443 66665543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2e-36 Score=297.51 Aligned_cols=368 Identities=23% Similarity=0.232 Sum_probs=222.7
Q ss_pred cEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCC
Q 036117 163 WLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN 242 (641)
Q Consensus 163 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n 242 (641)
++|++++|++..+....|.++++|+++++..|.++.+|.......+|+.|+|.+|.+. .+....+..++.|+.|||+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhc
Confidence 4466666666666666666777777777777777777776666666777777777776 555555566777777777777
Q ss_pred cccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCc
Q 036117 243 SFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPK 322 (641)
Q Consensus 243 ~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 322 (641)
.++..-...|..-.++++|+|++|.++......|..+.+|.+|.++.|+++...+..|.++++|+.|++..|.+...--.
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 77644444455556677777777777655555666666666667777666665555666666666666666655332222
Q ss_pred CCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCc
Q 036117 323 ELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFS 402 (641)
Q Consensus 323 ~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~ 402 (641)
.|..+++|+.|.+..|.+...-...|. .+.++++|+|..|++.
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy-------------------------------------~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFY-------------------------------------GLEKMEHLNLETNRLQ 282 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCccee-------------------------------------eecccceeecccchhh
Confidence 344445555555555544432222333 3444444444444444
Q ss_pred CCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCccccc
Q 036117 403 GPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGK 482 (641)
Q Consensus 403 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 482 (641)
..-..|+.++++|+.|++++|.|...-++.+..+++|++|+++.|.++.--+..+..+. +|++|.++.|.++..
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~------~Le~LnLs~Nsi~~l 356 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS------QLEELNLSHNSIDHL 356 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH------HhhhhcccccchHHH
Confidence 43344444555555555555555444444444455555555555555433333444444 455555555555433
Q ss_pred CCccccCCCCCceEeccCCcccCCCc---cccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhh
Q 036117 483 LPPGICRGGNLIYLTANVNKLVGPIP---ESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNW 559 (641)
Q Consensus 483 ~~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~ 559 (641)
-...+..+++|+.||+++|.++..+- ..|..+++|++|.+.+|++.......|..++.|+.|||.+|.+..+-|++|
T Consensus 357 ~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 357 AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence 33344555666666666666654332 346677888888888888876666778888888888888888888888888
Q ss_pred hcCCCCCEEeCcCCcC
Q 036117 560 GKCTNLSNFRISGNRI 575 (641)
Q Consensus 560 ~~l~~L~~L~L~~n~l 575 (641)
..+ .|++|.+..-.+
T Consensus 437 e~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 437 EPM-ELKELVMNSSSF 451 (873)
T ss_pred ccc-hhhhhhhcccce
Confidence 877 788877765443
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-36 Score=312.76 Aligned_cols=440 Identities=29% Similarity=0.309 Sum_probs=225.7
Q ss_pred CCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCC
Q 036117 138 LRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDN 217 (641)
Q Consensus 138 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~ 217 (641)
|+.|++++|.+. ..|..+..+.+|+.|+++.|.+...+ ....++.+|+++.|..|.+..+|..+..+++|++|++++|
T Consensus 47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp-~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVP-SSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCc-hhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence 444444444443 33444444444444444444443332 3344445555555555555555666666666666666666
Q ss_pred cCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCc
Q 036117 218 LIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIP 297 (641)
Q Consensus 218 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 297 (641)
.+. .+|... ..+..++.+..++|.-... ++... ++.+++..+.+.+.++..+..+.. .|++.+|.+. .
T Consensus 125 ~f~-~~Pl~i-~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~-- 192 (1081)
T KOG0618|consen 125 HFG-PIPLVI-EVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V-- 192 (1081)
T ss_pred ccC-CCchhH-HhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--
Confidence 554 444332 4455555555555511111 11111 555555555555555444444444 4566665554 1
Q ss_pred cccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccc
Q 036117 298 SSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDL 377 (641)
Q Consensus 298 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l 377 (641)
..+..+.+|+.+....|++..... .-++++.|+.+.|.++...+. ....+|+++++++|+++.
T Consensus 193 ~dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~----------- 255 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN----------- 255 (1081)
T ss_pred hhhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccc--cccccceeeecchhhhhc-----------
Confidence 234445555555555555433211 124566666666665532221 122345555544444432
Q ss_pred cccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcch
Q 036117 378 SGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEI 457 (641)
Q Consensus 378 ~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~ 457 (641)
+|++++.+++|+.++..+|+++ .+|..+...++|+.+.+..|++. .+|.....+++|++|++..|++. .+|+.+
T Consensus 256 ---lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~ 329 (1081)
T KOG0618|consen 256 ---LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNF 329 (1081)
T ss_pred ---chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHH
Confidence 2455666666666666666664 55555555666666666666666 55555666666666666666664 444322
Q ss_pred hcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCC
Q 036117 458 GNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGI 537 (641)
Q Consensus 458 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 537 (641)
.... +.++..+..+.|++.......-.....|+.|.+.+|.+....-+.+.+.++|+.|+|++|++.......+.+
T Consensus 330 l~v~----~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k 405 (1081)
T KOG0618|consen 330 LAVL----NASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK 405 (1081)
T ss_pred Hhhh----hHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhc
Confidence 1111 012444555555543211111122344555666666665555455555666666666666665444445555
Q ss_pred CCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCccc-CCccccCCCCCCEE
Q 036117 538 YPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGK-IPAQLFRSSFLIRL 616 (641)
Q Consensus 538 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-ip~~l~~~~~L~~l 616 (641)
++.|+.|++|+|.++ .+|.++..++.|++|...+|.+. ..| .+..+++|+.+|++.|+++.. +|.... .+.|++|
T Consensus 406 le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyL 481 (1081)
T KOG0618|consen 406 LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYL 481 (1081)
T ss_pred hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-Cccccee
Confidence 666666666666655 44555666666666666666665 455 455666666666666666432 222222 2556666
Q ss_pred eCcCCC
Q 036117 617 NLRRNQ 622 (641)
Q Consensus 617 ~l~~n~ 622 (641)
|+++|.
T Consensus 482 dlSGN~ 487 (1081)
T KOG0618|consen 482 DLSGNT 487 (1081)
T ss_pred eccCCc
Confidence 666664
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=3.6e-35 Score=303.83 Aligned_cols=477 Identities=27% Similarity=0.365 Sum_probs=332.6
Q ss_pred EECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCC
Q 036117 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLL 196 (641)
Q Consensus 117 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 196 (641)
+|.+.+.+. .+|..+-.-..++.|++.+|.+-...-+...+.-+|+.|++++|.+... +..+..+.+|+.|+++.|.+
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~f-p~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSF-PIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccC-CchhhhHHHHhhcccchhhH
Confidence 556666666 5665554444477777777765432223334444567777776665533 34455566666666666666
Q ss_pred CCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCccc
Q 036117 197 EKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEI 276 (641)
Q Consensus 197 ~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l 276 (641)
..+|....++.+|+++.|.+|.+. ..|..+ ..+.+|++|+++.|.+. .+|..+..+..+..+..++|.-... +
T Consensus 81 ~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~-~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----l 153 (1081)
T KOG0618|consen 81 RSVPSSCSNMRNLQYLNLKNNRLQ-SLPASI-SELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----L 153 (1081)
T ss_pred hhCchhhhhhhcchhheeccchhh-cCchhH-HhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----h
Confidence 666666666666666666666654 444433 56666666666666665 5566666666666666666521111 1
Q ss_pred CCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCe
Q 036117 277 GLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISE 356 (641)
Q Consensus 277 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~ 356 (641)
+.. .++.+++..|.+.+.++..+..+.. .+++++|.+. ...+..+++|+.+....|++.... ..-++++.
T Consensus 154 g~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~ 223 (1081)
T KOG0618|consen 154 GQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPSLTA 223 (1081)
T ss_pred ccc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcchhe
Confidence 211 1566666666666665555555544 5666666654 123455566666666666555211 12345556
Q ss_pred EeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCC
Q 036117 357 LGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNL 436 (641)
Q Consensus 357 L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 436 (641)
|+.+.|.+..+ . .-....+|++++++.|+++ .+|+|++.+.+|+.++..+|.++ .+|..+...
T Consensus 224 L~a~~n~l~~~-------------~--~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~ 286 (1081)
T KOG0618|consen 224 LYADHNPLTTL-------------D--VHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRI 286 (1081)
T ss_pred eeeccCcceee-------------c--cccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhh
Confidence 66555554421 1 1223468999999999998 56699999999999999999996 788888889
Q ss_pred CCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccC-CC-CCceEeccCCcccCCCccccccC
Q 036117 437 SSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICR-GG-NLIYLTANVNKLVGPIPESLWNC 514 (641)
Q Consensus 437 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~-~L~~L~l~~n~~~~~~~~~l~~~ 514 (641)
.+|+.+.+..|.+. .+|+...... .|++|++..|++. ..|+.+.. .. .+..+..+.|++.......=...
T Consensus 287 ~~L~~l~~~~nel~-yip~~le~~~------sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~ 358 (1081)
T KOG0618|consen 287 TSLVSLSAAYNELE-YIPPFLEGLK------SLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNH 358 (1081)
T ss_pred hhHHHHHhhhhhhh-hCCCcccccc------eeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhh
Confidence 99999999999987 6777777677 8999999999986 56654333 22 36777778777763221111235
Q ss_pred CCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeC
Q 036117 515 TGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDI 594 (641)
Q Consensus 515 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 594 (641)
+.|+.|++.+|.++......+.++++|+.|+|++|++.......+.+++.|++|+||+|+++ .+|..+.++..|++|..
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 67999999999999888888999999999999999999777778899999999999999998 88899999999999999
Q ss_pred CCCcCcccCCccccCCCCCCEEeCcCCCCc-ccCcccccCCCCCcCCC
Q 036117 595 FDNQLTGKIPAQLFRSSFLIRLNLRRNQLS-DKIPAEIGKLSRLQYLD 641 (641)
Q Consensus 595 ~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~-~~~p~~~~~l~~L~~l~ 641 (641)
.+|++. ..| .+..++.|+.+|+++|+++ +.+|..... +.|++||
T Consensus 438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLd 482 (1081)
T KOG0618|consen 438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLD 482 (1081)
T ss_pred cCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceee
Confidence 999998 788 8899999999999999997 456655443 6788776
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=4.2e-33 Score=276.00 Aligned_cols=368 Identities=27% Similarity=0.365 Sum_probs=255.8
Q ss_pred CcEEEeccccCC-CCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEecc
Q 036117 162 AWLLRIGANYLE-DPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLT 240 (641)
Q Consensus 162 L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 240 (641)
.+-+++++|.++ +..|.....+++++.|.+...++..+|..++.+.+|++|.+..|++. .+. +.++.++.|+.+.++
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vh-GELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVH-GELSDLPRLRSVIVR 86 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhh-hhhccchhhHHHhhh
Confidence 344455555555 33455566666667777777777777777777777777777777765 222 223667777777777
Q ss_pred CCccc-ccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCC
Q 036117 241 KNSFE-GEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSS 319 (641)
Q Consensus 241 ~n~~~-~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 319 (641)
.|++. +.+|..+..+..|+.|+|++|++. ..|..+...+++-.|++++|++.......+.++..|-.|++++|++ +.
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL-e~ 164 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL-EM 164 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh-hh
Confidence 77654 245666777777777777777777 6666677777777777777777755444556667777777777776 34
Q ss_pred CCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCC
Q 036117 320 IPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDN 399 (641)
Q Consensus 320 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n 399 (641)
+|.....+..|++|++++|.+.-.--..+.++.+|+.|.+++.+-+. .-+|..+..+.+|..+|++.|
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl------------~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL------------DNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh------------hcCCCchhhhhhhhhcccccc
Confidence 45556667777777777776653323334455566666655544221 135667777788888888888
Q ss_pred cCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcc
Q 036117 400 KFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNF 479 (641)
Q Consensus 400 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l 479 (641)
.+. .+|+++..+++|+.|+|++|+++ .+....+...+|++|++|.|+++ .+|+.++.++ +|+.|...+|++
T Consensus 233 ~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~------kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 233 NLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT------KLTKLYANNNKL 303 (1255)
T ss_pred CCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhH------HHHHHHhccCcc
Confidence 876 77888888888888888888887 45555666678888888888887 7788888777 788888888877
Q ss_pred ccc-CCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCC
Q 036117 480 SGK-LPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLT 556 (641)
Q Consensus 480 ~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~ 556 (641)
+-. +|..++.+..|+.+..++|++. .+|+.+..|.+|+.|.+++|++. .+|..+..++.|+.||+..|+-..-.|
T Consensus 304 ~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 304 TFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 643 7777888888888887777765 77777888888888888888776 577777778888888888876443333
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=6.3e-33 Score=274.76 Aligned_cols=365 Identities=28% Similarity=0.414 Sum_probs=233.9
Q ss_pred CCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEE
Q 036117 63 GSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLL 142 (641)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 142 (641)
+-|+.+|+++|.++|.-...+..+|+.++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..++.++.||.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 456777777777774332266777777777777777766 66777777777777777777766 3344566777777777
Q ss_pred cccccCC-CCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCch-hhcCCCCCcEEEeeCCcCC
Q 036117 143 LYNNSLT-GQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS-FIAECSKLMFLDLSDNLIM 220 (641)
Q Consensus 143 l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~ 220 (641)
+..|++. ..+|..+..+..|.+|++++|++... |..+...+++-+|++++|+|+++|. .+.+++.|-.||+++|.+.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 7777665 34666677777777777777776543 3345555666677777777766665 3445666666777776665
Q ss_pred CCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCC-ccCCcccCCCCcccEeeeecccccccCccc
Q 036117 221 GHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT-GTIPDEIGLLSNLEILEFHENLFHGLIPSS 299 (641)
Q Consensus 221 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 299 (641)
.+|+.. .++.+|+.|++++|.+.-.-...+..++.|+.|.+++.+-+ ..+|..+..+.+|..++++.|.+. ..|..
T Consensus 164 -~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 164 -MLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred -hcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 555544 66666777777766654333333445556666666655432 245556666666777777766665 45666
Q ss_pred cCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccc
Q 036117 300 LGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSG 379 (641)
Q Consensus 300 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~ 379 (641)
+.++++|+.|++++|.++.. ....+...+|++|+++.|+++ .+|+.+.+++.|+.|...+|++.. .
T Consensus 241 ly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~F------------e 306 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTF------------E 306 (1255)
T ss_pred HhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccc------------c
Confidence 66667777777777666432 222344456667777777766 666666666666666655555431 1
Q ss_pred cCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcC
Q 036117 380 KLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQL 449 (641)
Q Consensus 380 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l 449 (641)
.+|..++.+.+|+.+..++|.+. .+|+.++.|..|+.|.|+.|.+. .+|+.+.-++.|+.||+..|+-
T Consensus 307 GiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred CCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 35666666677777777666665 66666777777777777777665 5666666667777777766653
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=7.7e-23 Score=237.23 Aligned_cols=347 Identities=23% Similarity=0.284 Sum_probs=225.4
Q ss_pred hhccCCCCCcEEEeccccCC------CCCCcccCCCC-CCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChh
Q 036117 154 HQLSNLQNAWLLRIGANYLE------DPDPVKFKGMA-SLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIE 226 (641)
Q Consensus 154 ~~l~~l~~L~~L~l~~n~~~------~~~~~~l~~l~-~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~ 226 (641)
.+|.++++|+.|.+..+... ...+..|..++ +|+.|++.++.+..+|..+ ...+|++|++.++.+. .++..
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-ccccc
Confidence 34555666666665443211 11233344443 4677777776666666655 4566777777776665 34433
Q ss_pred hhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCC
Q 036117 227 QLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRL 306 (641)
Q Consensus 227 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L 306 (641)
. ..+++|+.|+++++.....+| .+..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|
T Consensus 630 ~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 630 V-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred c-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 2 566677777776655433444 35666777777777766555666666777777777777765555555444 56777
Q ss_pred CeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCC
Q 036117 307 QRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIG 386 (641)
Q Consensus 307 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~ 386 (641)
+.|++++|.....+|.. ..+|++|++++|.+. .+|..+ .+++|+.|.+.++....+. +.+....+....
T Consensus 707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~------~~~~~l~~~~~~ 775 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLW------ERVQPLTPLMTM 775 (1153)
T ss_pred CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhcc------ccccccchhhhh
Confidence 77777777554444432 356777788777765 455443 4566777776654322110 001111111223
Q ss_pred CCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCC
Q 036117 387 LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGP 466 (641)
Q Consensus 387 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~ 466 (641)
.+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|... .+++|++|++++|.....+|...
T Consensus 776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~--------- 845 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS--------- 845 (1153)
T ss_pred ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc---------
Confidence 35788899999887777788888889999999998886555677655 68889999999886655555421
Q ss_pred CCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcC
Q 036117 467 RFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRL 527 (641)
Q Consensus 467 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 527 (641)
.+|++|++++|.++ .+|.++..+++|+.|++++|+-...+|..+.++++|+.+++++|.-
T Consensus 846 ~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 846 TNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred cccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 26888999998887 6788888888999999988777667787778888888888888853
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.2e-22 Score=235.68 Aligned_cols=340 Identities=22% Similarity=0.231 Sum_probs=253.6
Q ss_pred CCcccCCCCCCCEEEcCCCCC-------CCCchhhcCC-CCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccccc
Q 036117 176 DPVKFKGMASLTDLWLDYNLL-------EKFPSFIAEC-SKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGE 247 (641)
Q Consensus 176 ~~~~l~~l~~L~~L~l~~~~~-------~~l~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 247 (641)
...+|.++++|+.|.+..+.. ..+|..+..+ .+|+.|++.++.+. .+|..+ ...+|++|+++++.+. .
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-c
Confidence 445688899999998866532 2456666665 46999999988876 666543 4688999999998887 5
Q ss_pred CCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCC
Q 036117 248 IPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFC 327 (641)
Q Consensus 248 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 327 (641)
++..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ .+
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 677788889999999988765556664 7788999999999988777788888889999999999886656666654 67
Q ss_pred CCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCc-----
Q 036117 328 ANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFS----- 402 (641)
Q Consensus 328 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~----- 402 (641)
++|+.|++++|...+.+|.. ..+|++|++++|.+.. +|..+ .+++|++|.+.++...
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~--------------lP~~~-~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE--------------FPSNL-RLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred CCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc--------------ccccc-cccccccccccccchhhcccc
Confidence 88999999988766566642 3567777777766543 33333 4677888888764321
Q ss_pred --CCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCccc
Q 036117 403 --GPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFS 480 (641)
Q Consensus 403 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 480 (641)
...+..+..+++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|..+ .+. +|++|++++|...
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~------sL~~L~Ls~c~~L 838 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLE------SLESLDLSGCSRL 838 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccc------ccCEEECCCCCcc
Confidence 1122223345788999999988777888888899999999999887666777654 344 7899999988655
Q ss_pred ccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCc
Q 036117 481 GKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ 550 (641)
Q Consensus 481 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 550 (641)
..+|.. .++++.|++++|.+. .+|.++..+++|+.|++++|+-...+|..+..++.|+.+++++|.
T Consensus 839 ~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 839 RTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 555542 357888889888887 678888888889999998876555677777788888888888885
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=2e-24 Score=204.01 Aligned_cols=408 Identities=22% Similarity=0.223 Sum_probs=222.8
Q ss_pred CCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEecc-ccCCCCCCcccCCCCCCCEEEc
Q 036117 113 KLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGA-NYLEDPDPVKFKGMASLTDLWL 191 (641)
Q Consensus 113 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l 191 (641)
.-..++|..|.|+...|.+|+.+++||.|||++|.|+.+.|++|++++.|.+|-+.+ |+|+++....|.++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456788888888876677788888888888888888888888888888877776655 7888888888888888888888
Q ss_pred CCCCCCCCc-hhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCc
Q 036117 192 DYNLLEKFP-SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTG 270 (641)
Q Consensus 192 ~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~ 270 (641)
.-|.+..++ ..+..++++..|.+.+|.+. .+....|..+..++.+.+..|.+.. ..+++.+.... .
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-------a 214 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-------A 214 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc-----ccccchhhhHH-------h
Confidence 888776554 46777777777777777766 5555555666677777776665321 11222211110 0
Q ss_pred cCCcccCCCCcccEeeeecccccccCccccCCC-CCCCeeeccCccCCCCCC-cCCCCCCCCCEEEccCccccccCchhh
Q 036117 271 TIPDEIGLLSNLEILEFHENLFHGLIPSSLGNL-RRLQRLNLKSAGLNSSIP-KELGFCANLTFLELSINNLTGSLPLSL 348 (641)
Q Consensus 271 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~l 348 (641)
..|..++...-..-..+.+.++....+..+... ..+..--.+.+......| ..|..+++|+.|++++|++++.-+.+|
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF 294 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF 294 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence 111112222222222333333332222222111 011100011111112211 235566666666666666666666666
Q ss_pred hcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCcc
Q 036117 349 ASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGS 428 (641)
Q Consensus 349 ~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 428 (641)
.....+++|.+..|++..+.. ..|.++..|+.|+|.+|+|+...|.+|..+.+|.+|.+-.|.+...
T Consensus 295 e~~a~l~eL~L~~N~l~~v~~-------------~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 295 EGAAELQELYLTRNKLEFVSS-------------GMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred cchhhhhhhhcCcchHHHHHH-------------HhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 666666666666655544321 2344455566666666666655566666666666666655544310
Q ss_pred -----Ccccc-----------cCCCCCCEEEccCCcCcc---cCCcchhcCCCCCCCCCccEEEccCCcccccCCccccC
Q 036117 429 -----IPSTI-----------GNLSSLVKLSLSSNQLTG---TLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICR 489 (641)
Q Consensus 429 -----~~~~l-----------~~l~~L~~L~ls~n~l~~---~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 489 (641)
+.+++ ++...++.+.+++..+.+ ..|+..+-.. -+..-..
T Consensus 362 C~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~---------------------s~~cP~~ 420 (498)
T KOG4237|consen 362 CRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLT---------------------SSPCPPP 420 (498)
T ss_pred cchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCC---------------------CCCCCCC
Confidence 00110 011133334443332221 0111111000 1111223
Q ss_pred CCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEe
Q 036117 490 GGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFR 569 (641)
Q Consensus 490 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 569 (641)
++.+.+..=-.|+....+|..+. ...+++++.+|.++ .+|.. .+.+| .+|+++|+++..-...|.++++|.+|.
T Consensus 421 c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tli 494 (498)
T KOG4237|consen 421 CTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLI 494 (498)
T ss_pred cchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeE
Confidence 44444332222333334443221 33567788888887 34443 55667 888888888766667788888888888
Q ss_pred CcCC
Q 036117 570 ISGN 573 (641)
Q Consensus 570 L~~n 573 (641)
|++|
T Consensus 495 lsyn 498 (498)
T KOG4237|consen 495 LSYN 498 (498)
T ss_pred EecC
Confidence 8765
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=3.4e-24 Score=202.45 Aligned_cols=277 Identities=20% Similarity=0.184 Sum_probs=167.8
Q ss_pred CCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEccc-ccCCCCCChhccCCCCCcEEEe
Q 036117 89 NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYN-NSLTGQIPHQLSNLQNAWLLRI 167 (641)
Q Consensus 89 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l 167 (641)
.-.+++|..|+|+...+.+|+.+++||.|||++|.|+.+-|.+|.++++|..|-+.+ |+|+..-...|.++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 344556666666655555666666666666666666655666666666655554444 5565444455666666666666
Q ss_pred ccccCCCCCCcccCCCCCCCEEEcCCCCCCCCch-hhcCCCCCcEEEeeCCcCCCCCC-----------hhhhcCCCCCc
Q 036117 168 GANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS-FIAECSKLMFLDLSDNLIMGHIP-----------IEQLTHLENLE 235 (641)
Q Consensus 168 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~~~~-----------~~~l~~l~~L~ 235 (641)
.-|++.-+..+.|..+++|..|.+.+|.+..++. .+..+..++.+.+..|.+...-. ...++......
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 6666666666666666666666666666655554 45555556655555544211100 00112222222
Q ss_pred EEeccCCcccccCCcccCCC-CCCCEEEcCCCcCCccCC-cccCCCCcccEeeeecccccccCccccCCCCCCCeeeccC
Q 036117 236 YLNLTKNSFEGEIPREIKTF-PKLRHLKLGQNKLTGTIP-DEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKS 313 (641)
Q Consensus 236 ~L~l~~n~~~~~~~~~l~~l-~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 313 (641)
-..+.+.++....+..+... ..+.+=-.+.+...+..| ..|..+++|++|++++|++++.-+.+|.+..++++|.+..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 33333333332222222211 111111112222333333 3477888899999999999888888888889999999999
Q ss_pred ccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCccccc
Q 036117 314 AGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLS 365 (641)
Q Consensus 314 ~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~ 365 (641)
|++...-...|..+..|+.|++++|+++...|.+|.....|.+|++-.|++-
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 8887666667888889999999999999888888888888888888877754
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1.1e-20 Score=203.25 Aligned_cols=264 Identities=28% Similarity=0.382 Sum_probs=136.5
Q ss_pred cccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCC
Q 036117 281 NLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGIS 360 (641)
Q Consensus 281 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~ 360 (641)
.-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++ .+|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 3456777777776 3455443 367777777777754 332 2367777777777776 33421 3456666666
Q ss_pred cccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCC
Q 036117 361 NNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLV 440 (641)
Q Consensus 361 ~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 440 (641)
+|.++.+ |. .+.+|+.|++++|+++. +|. ..++|+.|++++|++.+ +|.. ...|+
T Consensus 271 ~N~L~~L--------------p~---lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~ 325 (788)
T PRK15387 271 SNPLTHL--------------PA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELC 325 (788)
T ss_pred CCchhhh--------------hh---chhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---ccccc
Confidence 5554433 11 12456667777776663 332 23566666666666663 3331 13455
Q ss_pred EEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEE
Q 036117 441 KLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRV 520 (641)
Q Consensus 441 ~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 520 (641)
.|++++|.++ .+|... .+|++|++++|+++ .+|.. .++|+.|++++|++. .+|.. ..+|+.|
T Consensus 326 ~L~Ls~N~L~-~LP~lp---------~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~L 387 (788)
T PRK15387 326 KLWAYNNQLT-SLPTLP---------SGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKEL 387 (788)
T ss_pred ccccccCccc-cccccc---------cccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---ccccceE
Confidence 6666666665 233210 14666666666665 33332 234555555555554 23322 1345555
Q ss_pred ECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCc
Q 036117 521 RLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT 600 (641)
Q Consensus 521 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 600 (641)
++++|++.+ +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|..+.++++|+.|+|++|+++
T Consensus 388 dLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 388 IVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred EecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 555555542 2221 2345555555555542 3322 123445555555554 44555555555555555555555
Q ss_pred ccCCccc
Q 036117 601 GKIPAQL 607 (641)
Q Consensus 601 ~~ip~~l 607 (641)
+.+|..+
T Consensus 459 ~~~~~~L 465 (788)
T PRK15387 459 ERTLQAL 465 (788)
T ss_pred chHHHHH
Confidence 4444433
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=4.5e-19 Score=190.97 Aligned_cols=265 Identities=25% Similarity=0.331 Sum_probs=134.1
Q ss_pred CCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEc
Q 036117 112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWL 191 (641)
Q Consensus 112 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 191 (641)
..-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++.++. ..++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcccC----cccccceeec
Confidence 34566777777776 5666554 367777777777663 343 23566666666666664432 1245666666
Q ss_pred CCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCcc
Q 036117 192 DYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGT 271 (641)
Q Consensus 192 ~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~ 271 (641)
++|.+..+|... ++|+.|++++|+++ .+|. ..++|++|++++|.+++ +|.. ..+|+.|++++|.++ .
T Consensus 270 s~N~L~~Lp~lp---~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~ 336 (788)
T PRK15387 270 FSNPLTHLPALP---SGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-S 336 (788)
T ss_pred cCCchhhhhhch---hhcCEEECcCCccc-cccc----cccccceeECCCCcccc-CCCC---cccccccccccCccc-c
Confidence 666655555422 34555555555554 3331 12445555555555542 2221 123444555555444 2
Q ss_pred CCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcC
Q 036117 272 IPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASL 351 (641)
Q Consensus 272 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~ 351 (641)
+|. ...+ |+.|++++|.+.+ +|.. .++|+.|++++|++.+ +|.. .
T Consensus 337 LP~---lp~~------------------------Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~ 381 (788)
T PRK15387 337 LPT---LPSG------------------------LQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---P 381 (788)
T ss_pred ccc---cccc------------------------cceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---c
Confidence 222 1123 4444444444432 1211 1344555555555542 3321 1
Q ss_pred CCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcc
Q 036117 352 RQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPS 431 (641)
Q Consensus 352 ~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 431 (641)
.+|+.|++++|+++.+ |.. .++|+.|++++|+++. +|.. ..+|+.|++++|+++ .+|.
T Consensus 382 ~~L~~LdLs~N~Lt~L--------------P~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~ 439 (788)
T PRK15387 382 SGLKELIVSGNRLTSL--------------PVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPE 439 (788)
T ss_pred cccceEEecCCcccCC--------------CCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccCh
Confidence 2444555444433321 111 2356666666666653 3332 234556666666665 5566
Q ss_pred cccCCCCCCEEEccCCcCcccCCcch
Q 036117 432 TIGNLSSLVKLSLSSNQLTGTLPPEI 457 (641)
Q Consensus 432 ~l~~l~~L~~L~ls~n~l~~~~~~~~ 457 (641)
.+.++++|+.|++++|++++..+..+
T Consensus 440 sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 440 SLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred HHhhccCCCeEECCCCCCCchHHHHH
Confidence 66666666666666666666555544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.7e-18 Score=187.93 Aligned_cols=246 Identities=26% Similarity=0.372 Sum_probs=176.1
Q ss_pred CCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcC
Q 036117 305 RLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPE 384 (641)
Q Consensus 305 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~ 384 (641)
+...|+++++.++. +|..+. +.++.|++++|+++ .+|..+. ++|+.|++++|+++.+ |..
T Consensus 179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsL--------------P~~ 238 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSI--------------PAT 238 (754)
T ss_pred CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccC--------------Chh
Confidence 45778888887754 454443 57999999999998 5665543 4788888777766533 332
Q ss_pred CCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCC
Q 036117 385 IGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDF 464 (641)
Q Consensus 385 l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 464 (641)
+ .++|+.|++++|++. .+|..+. .+|+.|++++|++. .+|..+. ++|++|++++|.++ .+|..+.
T Consensus 239 l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp------ 303 (754)
T PRK15370 239 L--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP------ 303 (754)
T ss_pred h--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch------
Confidence 2 247899999999887 5666554 57899999999888 5666543 58999999999887 4554332
Q ss_pred CCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEE
Q 036117 465 GPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYI 544 (641)
Q Consensus 465 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 544 (641)
++|+.|++++|.++ .+|..+. ++|+.|++++|.+.+ +|..+. ++|+.|++++|++. .+|..+ .+.|+.|
T Consensus 304 --~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~L 372 (754)
T PRK15370 304 --SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTL 372 (754)
T ss_pred --hhHHHHHhcCCccc-cCCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEE
Confidence 26888899998887 4555443 578888888888874 665543 67888888888887 355544 3688888
Q ss_pred eCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCcc----ccCCCCCCEEeCCCCcCc
Q 036117 545 DLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAE----LGNLTYLQNLDIFDNQLT 600 (641)
Q Consensus 545 ~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~ 600 (641)
++++|+++ .+|..+. ..|+.|++++|++. .+|.. +..++.+..+++.+|+++
T Consensus 373 dLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 373 DVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred ECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 88888888 4455554 36888888888887 44543 344577888888888886
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=4.3e-18 Score=184.80 Aligned_cols=279 Identities=25% Similarity=0.368 Sum_probs=200.9
Q ss_pred CcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeC
Q 036117 280 SNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGI 359 (641)
Q Consensus 280 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 359 (641)
.+...|+++++.++. +|..+. +.++.|++++|.+.. +|..+. ++|+.|++++|+++ .+|..+. +.|+.|++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 355788999888874 455443 579999999999874 454443 58999999999998 5666543 47888887
Q ss_pred CcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCC
Q 036117 360 SNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSL 439 (641)
Q Consensus 360 ~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 439 (641)
++|.+..+ |..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|.++ .+|..+. ++|
T Consensus 249 s~N~L~~L--------------P~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL 306 (754)
T PRK15370 249 SINRITEL--------------PERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGI 306 (754)
T ss_pred cCCccCcC--------------ChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhH
Confidence 77766533 33332 47999999999998 4666553 58999999999998 4554432 478
Q ss_pred CEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcE
Q 036117 440 VKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTR 519 (641)
Q Consensus 440 ~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 519 (641)
+.|++++|.++ .+|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|++. .+|..+. ++|+.
T Consensus 307 ~~L~Ls~N~Lt-~LP~~l~--------~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~ 371 (754)
T PRK15370 307 THLNVQSNSLT-ALPETLP--------PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITT 371 (754)
T ss_pred HHHHhcCCccc-cCCcccc--------ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCE
Confidence 99999999987 4554432 279999999999984 776654 68999999999987 5676553 68999
Q ss_pred EECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhh----hcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCC
Q 036117 520 VRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNW----GKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIF 595 (641)
Q Consensus 520 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 595 (641)
|++++|++.. +|..+. +.|+.|++++|++. .+|..+ ..++.+..+++.+|++.. ..+..|+.+ ++
T Consensus 372 LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~ 440 (754)
T PRK15370 372 LDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MS 440 (754)
T ss_pred EECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hh
Confidence 9999999984 555443 47999999999998 455544 345788999999999872 334445555 45
Q ss_pred CCcCccc-CCccccCCCCCCE
Q 036117 596 DNQLTGK-IPAQLFRSSFLIR 615 (641)
Q Consensus 596 ~n~l~~~-ip~~l~~~~~L~~ 615 (641)
.+.+.|. ++......+.++.
T Consensus 441 s~~~~gp~i~~~~~~~~~l~~ 461 (754)
T PRK15370 441 SVGYQGPRVLFAMGDFSIVRV 461 (754)
T ss_pred cccccCCcccccccccccccc
Confidence 5555543 3333333444443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=1.6e-19 Score=182.56 Aligned_cols=211 Identities=20% Similarity=0.280 Sum_probs=117.8
Q ss_pred hhhCCCCCCeEecccCcCCccCcccccCCCC---CCEEEccCCcCcccC----CcchhcCCCCCCCCCccEEEccCCccc
Q 036117 408 QIGNLTNLFDLQLANNFFNGSIPSTIGNLSS---LVKLSLSSNQLTGTL----PPEIGNSKSDFGPRFLRNVSFSYNNFS 480 (641)
Q Consensus 408 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~ls~n~l~~~~----~~~~~~~~~~~~~~~L~~L~ls~n~l~ 480 (641)
.+..+++|+.|++++|.+.+..+..+..+.. |++|++++|.+.+.. ...+... +++|++|++++|.++
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~-----~~~L~~L~L~~n~l~ 150 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL-----PPALEKLVLGRNRLE 150 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhC-----CCCceEEEcCCCcCC
Confidence 3444455555555555554333333322222 555555555554211 1111222 014566666666555
Q ss_pred cc----CCccccCCCCCceEeccCCcccCC----CccccccCCCCcEEECCCCcCccc----cCcccCCCCCCcEEeCCC
Q 036117 481 GK----LPPGICRGGNLIYLTANVNKLVGP----IPESLWNCTGLTRVRLEQNRLDGD----ITNALGIYPDLQYIDLGD 548 (641)
Q Consensus 481 ~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~ 548 (641)
+. ++..+..++.|+.|++++|.+.+. ++..+..+++|+.|++++|.+.+. +...+..+++|++|++++
T Consensus 151 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 151 GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred chHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence 21 233344556667777777666532 223344556777777777777533 234456677888888888
Q ss_pred CcccccCChhhhc-----CCCCCEEeCcCCcCcc----cCCccccCCCCCCEEeCCCCcCccc----CCccccCC-CCCC
Q 036117 549 NQLSGVLTSNWGK-----CTNLSNFRISGNRIKG----GIPAELGNLTYLQNLDIFDNQLTGK----IPAQLFRS-SFLI 614 (641)
Q Consensus 549 n~~~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----ip~~l~~~-~~L~ 614 (641)
|++++..+..+.. .+.|++|++++|.+++ .+...+..+++|+++++++|.++.. +...+... +.++
T Consensus 231 n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~ 310 (319)
T cd00116 231 NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELE 310 (319)
T ss_pred CcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchh
Confidence 8777533333322 2678888888887752 2334556667888888888888744 33333334 5778
Q ss_pred EEeCcCCCC
Q 036117 615 RLNLRRNQL 623 (641)
Q Consensus 615 ~l~l~~n~l 623 (641)
++++.+|++
T Consensus 311 ~~~~~~~~~ 319 (319)
T cd00116 311 SLWVKDDSF 319 (319)
T ss_pred hcccCCCCC
Confidence 888877764
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=2.2e-19 Score=181.63 Aligned_cols=240 Identities=20% Similarity=0.228 Sum_probs=179.1
Q ss_pred CCCCCCCCCEEEccCCcCcCC----chhhhhCCCCCCeEecccCcCCc------cCcccccCCCCCCEEEccCCcCcccC
Q 036117 384 EIGLLPKLEYLYLFDNKFSGP----IPQQIGNLTNLFDLQLANNFFNG------SIPSTIGNLSSLVKLSLSSNQLTGTL 453 (641)
Q Consensus 384 ~l~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~------~~~~~l~~l~~L~~L~ls~n~l~~~~ 453 (641)
.+..+.+|++++++++.+++. ++..+...+++++++++++.+.+ .++..+..+++|++|++++|.+.+..
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 344456688888888877543 44455667778888888887662 24456777899999999999998666
Q ss_pred CcchhcCCCCCCCCCccEEEccCCcccc----cCCccccCC-CCCceEeccCCcccCC----CccccccCCCCcEEECCC
Q 036117 454 PPEIGNSKSDFGPRFLRNVSFSYNNFSG----KLPPGICRG-GNLIYLTANVNKLVGP----IPESLWNCTGLTRVRLEQ 524 (641)
Q Consensus 454 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~~-~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~ 524 (641)
+..+..+... +.|++|++++|++++ .+...+..+ ++|+.|++++|.+.+. ++..+..+++|++|++++
T Consensus 98 ~~~~~~l~~~---~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 98 CGVLESLLRS---SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred HHHHHHHhcc---CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 6666555411 359999999999874 233445666 8999999999999843 344567788999999999
Q ss_pred CcCccc----cCcccCCCCCCcEEeCCCCcccccC----ChhhhcCCCCCEEeCcCCcCcccCCcccc-----CCCCCCE
Q 036117 525 NRLDGD----ITNALGIYPDLQYIDLGDNQLSGVL----TSNWGKCTNLSNFRISGNRIKGGIPAELG-----NLTYLQN 591 (641)
Q Consensus 525 n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~ 591 (641)
|.+.+. ++..+..++.|+.|++++|.+++.. +..+..+++|++|++++|++++..+..+. ..+.|+.
T Consensus 175 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~ 254 (319)
T cd00116 175 NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT 254 (319)
T ss_pred CCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence 999853 3344566789999999999987543 34556788999999999999863332222 2479999
Q ss_pred EeCCCCcCcc----cCCccccCCCCCCEEeCcCCCCccc
Q 036117 592 LDIFDNQLTG----KIPAQLFRSSFLIRLNLRRNQLSDK 626 (641)
Q Consensus 592 L~L~~n~l~~----~ip~~l~~~~~L~~l~l~~n~l~~~ 626 (641)
|++++|.++. .++..+..++.|+.+++++|+++..
T Consensus 255 L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 255 LSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred EEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 9999999972 2445666778999999999999865
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=4.5e-19 Score=148.81 Aligned_cols=162 Identities=28% Similarity=0.452 Sum_probs=141.7
Q ss_pred CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCC
Q 036117 468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLG 547 (641)
Q Consensus 468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 547 (641)
.+..|.+|+|+++ .+|+.+..+.+|+.|++++|++. .+|..++++++|+.|+++-|++. ..|..|+.+|.|+.||+.
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 6777888888887 77888888889999999988887 77888999999999999988887 788999999999999999
Q ss_pred CCccc-ccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCccc
Q 036117 548 DNQLS-GVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDK 626 (641)
Q Consensus 548 ~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~ 626 (641)
+|++. ...|..|..++.|+.|++++|.+. .+|..++++++|+.|.+.+|++. ++|.+++.+..|++|.+.+|.++ -
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-v 187 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-V 187 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-e
Confidence 99876 468888888999999999999997 88889999999999999999997 79999999999999999999997 6
Q ss_pred CcccccCCC
Q 036117 627 IPAEIGKLS 635 (641)
Q Consensus 627 ~p~~~~~l~ 635 (641)
+|..++++.
T Consensus 188 lppel~~l~ 196 (264)
T KOG0617|consen 188 LPPELANLD 196 (264)
T ss_pred cChhhhhhh
Confidence 777777653
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=3.9e-18 Score=143.21 Aligned_cols=158 Identities=28% Similarity=0.437 Sum_probs=96.9
Q ss_pred CCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCC
Q 036117 83 DFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNA 162 (641)
Q Consensus 83 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 162 (641)
.+-.+.+++.|.|++|+++ .+|..++.+.+|++|++.+|++. .+|..++.+++|++|+++-|++. ..|..|+.++.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 4455667777778888777 56666778888888888888877 67777788888888888877776 667777777777
Q ss_pred cEEEeccccCCC-CCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccC
Q 036117 163 WLLRIGANYLED-PDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTK 241 (641)
Q Consensus 163 ~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 241 (641)
++|++.+|++.. ..+..|..+..|+.|.+++|.++-+|..++++++|+.|.+.+|.+. .+|... +.+..|++|.+.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkei-g~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEI-GDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHH-HHHHHHHHHhccc
Confidence 777777776543 2334444444444444444444444444444444444444444443 333332 4444444444444
Q ss_pred Cccc
Q 036117 242 NSFE 245 (641)
Q Consensus 242 n~~~ 245 (641)
|+++
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 4443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.52 E-value=7.8e-14 Score=151.39 Aligned_cols=147 Identities=35% Similarity=0.555 Sum_probs=124.0
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCc-----cccceeeCC---C--CCEEEEEcCCCCCccccCCcCCCCCC
Q 036117 19 SAQKEAKALLNWKSSLVSSSLPSWTAINSNSGPC-----NWNGIQCNE---V--GSISEINLANSGLDGTLDGFDFSAFP 88 (641)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~~~~~~W~~~~~~~~~c-----~~~gv~c~~---~--~~v~~l~l~~~~~~~~~~~~~~~~l~ 88 (641)
..++|..||..+|+++..+...+|.+ ++| .|.|+.|.. . ..++.|+|+++.+.|.+| ..++.++
T Consensus 369 t~~~~~~aL~~~k~~~~~~~~~~W~g-----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip-~~i~~L~ 442 (623)
T PLN03150 369 TLLEEVSALQTLKSSLGLPLRFGWNG-----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIP-NDISKLR 442 (623)
T ss_pred cCchHHHHHHHHHHhcCCcccCCCCC-----CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCC-HHHhCCC
Confidence 45678999999999886543448964 345 699999952 1 258899999999999888 7899999
Q ss_pred CCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCC-CCCcEEEe
Q 036117 89 NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNL-QNAWLLRI 167 (641)
Q Consensus 89 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l 167 (641)
+|++|+|++|.+.+.+|..+..+++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..+... .++..+++
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999888764 45677777
Q ss_pred cccc
Q 036117 168 GANY 171 (641)
Q Consensus 168 ~~n~ 171 (641)
.+|.
T Consensus 523 ~~N~ 526 (623)
T PLN03150 523 TDNA 526 (623)
T ss_pred cCCc
Confidence 7765
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=6.5e-13 Score=132.46 Aligned_cols=191 Identities=28% Similarity=0.402 Sum_probs=125.8
Q ss_pred CCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCcc
Q 036117 391 LEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR 470 (641)
Q Consensus 391 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~ 470 (641)
-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+.++..|++++++.|+++ ..|..++.++ |+
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-------Lk 146 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-------LK 146 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-------ce
Confidence 345667777766 56666666667777777777766 56666777777777777777776 6677777776 77
Q ss_pred EEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCc
Q 036117 471 NVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ 550 (641)
Q Consensus 471 ~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 550 (641)
.|-+++|+++ .+|..++....|..|+.+.|.+. .+|..+..+.+|+.|+++.|++. ..|..+. .-.|..||+|+|+
T Consensus 147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNk 222 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNK 222 (722)
T ss_pred eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCc
Confidence 7777777776 66776766677777777777776 55566666777777777777766 3444444 3346677777777
Q ss_pred ccccCChhhhcCCCCCEEeCcCCcCcccCCccc---cCCCCCCEEeCCCC
Q 036117 551 LSGVLTSNWGKCTNLSNFRISGNRIKGGIPAEL---GNLTYLQNLDIFDN 597 (641)
Q Consensus 551 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n 597 (641)
++ .+|-+|.+|+.|++|-|.+|++. ..|..+ +...=-++|+..-|
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 76 66667777777777777777775 344332 22222355555555
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=6e-13 Score=132.72 Aligned_cols=194 Identities=27% Similarity=0.382 Sum_probs=146.4
Q ss_pred CCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCC
Q 036117 413 TNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGN 492 (641)
Q Consensus 413 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~ 492 (641)
.--...|++.|.+. .+|..+..+..|+.+.+..|.+. .+|..++++. .|.+++++.|+++ .+|..++.++
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~------~lt~l~ls~NqlS-~lp~~lC~lp- 144 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLE------ALTFLDLSSNQLS-HLPDGLCDLP- 144 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhh------HHHHhhhccchhh-cCChhhhcCc-
Confidence 33446678888887 77877888888888888888876 7788888887 7888888888887 6777776654
Q ss_pred CceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcC
Q 036117 493 LIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISG 572 (641)
Q Consensus 493 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~ 572 (641)
|+.|-+++|++. .+|..++..++|..|+.+.|.+. .+|..++.+.+|+.|.++.|++. ..|+++..+ .|..||++.
T Consensus 145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSC 220 (722)
T ss_pred ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeeccc
Confidence 777778888876 66777777788888888888776 56666778888888888888877 456666644 478888888
Q ss_pred CcCcccCCccccCCCCCCEEeCCCCcCcccCCcccc---CCCCCCEEeCcCCC
Q 036117 573 NRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLF---RSSFLIRLNLRRNQ 622 (641)
Q Consensus 573 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~---~~~~L~~l~l~~n~ 622 (641)
|+++ .+|.+|.+|+.|++|.|.+|++. +-|..+- ...-.++|+..-|+
T Consensus 221 Nkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 221 NKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred Ccee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 8887 78888888888888888888887 5565443 23455667777775
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.13 E-value=1.1e-10 Score=127.04 Aligned_cols=106 Identities=31% Similarity=0.476 Sum_probs=58.6
Q ss_pred CcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCC
Q 036117 517 LTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFD 596 (641)
Q Consensus 517 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 596 (641)
++.|+|++|.+.|.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++.|.+|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CcCcccCCccccCC-CCCCEEeCcCCC
Q 036117 597 NQLTGKIPAQLFRS-SFLIRLNLRRNQ 622 (641)
Q Consensus 597 n~l~~~ip~~l~~~-~~L~~l~l~~n~ 622 (641)
|+++|.+|..+... ..+..+++.+|+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 55555555554432 334455555554
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.12 E-value=6e-11 Score=131.59 Aligned_cols=128 Identities=27% Similarity=0.305 Sum_probs=88.4
Q ss_pred CEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCC--CCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEE
Q 036117 64 SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNN--LVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVL 141 (641)
Q Consensus 64 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~--~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 141 (641)
.++.+.+-++.+... ..-...+.|++|-+.+|. +.......|..++.|++||+++|.-.+.+|..++.+-+||+|
T Consensus 524 ~~rr~s~~~~~~~~~---~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHI---AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchhhc---cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 445555544443311 122234478888888775 443334446778888888888887767888888888888888
Q ss_pred EcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCC
Q 036117 142 LLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNL 195 (641)
Q Consensus 142 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 195 (641)
+++++.+. .+|..+.+++.|.+|++..+......+.....+++|++|.+....
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 88888877 778888888888888888776554556666667777777776544
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=7.9e-12 Score=117.88 Aligned_cols=86 Identities=30% Similarity=0.341 Sum_probs=36.9
Q ss_pred CCCCEEEcCCCCCCCCc-----hhhcCCCCCcEEEeeCCcCCCCC---ChhhhcCCCCCcEEeccCCccccc----CCcc
Q 036117 184 ASLTDLWLDYNLLEKFP-----SFIAECSKLMFLDLSDNLIMGHI---PIEQLTHLENLEYLNLTKNSFEGE----IPRE 251 (641)
Q Consensus 184 ~~L~~L~l~~~~~~~l~-----~~l~~~~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~n~~~~~----~~~~ 251 (641)
++|+++...+|.+..-+ ..+...+.|+.+.+..|.+...- -...+.++++|+.||+++|.++.. +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 44555555555543222 23444455555555555443111 112234445555555555544321 1122
Q ss_pred cCCCCCCCEEEcCCCcCC
Q 036117 252 IKTFPKLRHLKLGQNKLT 269 (641)
Q Consensus 252 l~~l~~L~~L~L~~~~l~ 269 (641)
+..+++|++|++++|.+.
T Consensus 237 L~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLE 254 (382)
T ss_pred hcccchheeecccccccc
Confidence 333444555555555443
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=8.5e-11 Score=122.31 Aligned_cols=200 Identities=32% Similarity=0.476 Sum_probs=130.8
Q ss_pred CEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCC-CCCEEEccCCcCcccCCcchhcCCCCCCCCCcc
Q 036117 392 EYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLS-SLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR 470 (641)
Q Consensus 392 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~ 470 (641)
..+++..+.+..... .+...+.++.+++.+|.++ .++....... +|+.|++++|.+. .+|..+..++ .|+
T Consensus 96 ~~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~------~L~ 166 (394)
T COG4886 96 PSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLP------NLK 166 (394)
T ss_pred ceeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccc------ccc
Confidence 357777777643332 3445577888888888887 5666566663 7888888888876 4444555555 788
Q ss_pred EEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCc
Q 036117 471 NVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ 550 (641)
Q Consensus 471 ~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 550 (641)
.|++++|+++ .+|......+.|+.|++++|++. .+|........|+++.+++|++. ..+..+..+..+..+.+.+|+
T Consensus 167 ~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 167 NLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred ccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCce
Confidence 8888888776 55555556777777777777776 55544444555777777777533 344455666667777777776
Q ss_pred ccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCcc
Q 036117 551 LSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQ 606 (641)
Q Consensus 551 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~ 606 (641)
+... +..++.++.++.|++++|.++ .++. ++.+..++.|++++|.+....|..
T Consensus 244 ~~~~-~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 244 LEDL-PESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred eeec-cchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 6532 455666666777777777776 3333 666777777777777776554443
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=3.8e-12 Score=119.99 Aligned_cols=235 Identities=21% Similarity=0.256 Sum_probs=118.5
Q ss_pred CCCCCCEEEccCCcCcCCc----hhhhhCCCCCCeEecccCcC---CccCc-------ccccCCCCCCEEEccCCcCccc
Q 036117 387 LLPKLEYLYLFDNKFSGPI----PQQIGNLTNLFDLQLANNFF---NGSIP-------STIGNLSSLVKLSLSSNQLTGT 452 (641)
Q Consensus 387 ~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l---~~~~~-------~~l~~l~~L~~L~ls~n~l~~~ 452 (641)
.+.+++++++++|.+...- ...+.+.++|+..++++-.. ...+| +.+..+|+|+++++|+|-+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 3445555555555554322 22233444555555543211 11122 1233445566666666655444
Q ss_pred CCcchhcCCCCCCCCCccEEEccCCcccccC-------------CccccCCCCCceEeccCCcccCC----CccccccCC
Q 036117 453 LPPEIGNSKSDFGPRFLRNVSFSYNNFSGKL-------------PPGICRGGNLIYLTANVNKLVGP----IPESLWNCT 515 (641)
Q Consensus 453 ~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-------------~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~~~ 515 (641)
.+..+..+-.. ...|++|.+.+|.+...- -.-..+-+.|+++....|++-.. +...|...+
T Consensus 108 g~~~l~~ll~s--~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 108 GIRGLEELLSS--CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred chHHHHHHHHh--ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 33332221100 114566666555543110 01122345566666666665432 123355566
Q ss_pred CCcEEECCCCcCccc----cCcccCCCCCCcEEeCCCCccccc----CChhhhcCCCCCEEeCcCCcCcccCCccc----
Q 036117 516 GLTRVRLEQNRLDGD----ITNALGIYPDLQYIDLGDNQLSGV----LTSNWGKCTNLSNFRISGNRIKGGIPAEL---- 583 (641)
Q Consensus 516 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~~l---- 583 (641)
.|+.+.+..|.+... ....+..+++|+.|||.+|-++.. +...+..++.|+.|++++|.+...-...+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 677777766666321 234455667777777777766532 23445556667777777776654322222
Q ss_pred -cCCCCCCEEeCCCCcCccc----CCccccCCCCCCEEeCcCCCC
Q 036117 584 -GNLTYLQNLDIFDNQLTGK----IPAQLFRSSFLIRLNLRRNQL 623 (641)
Q Consensus 584 -~~l~~L~~L~L~~n~l~~~----ip~~l~~~~~L~~l~l~~n~l 623 (641)
...++|+++++.+|.++.. +...+...+.|+.|+|++|.+
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2356777777777776533 223334456777777777776
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=1.3e-10 Score=121.02 Aligned_cols=198 Identities=35% Similarity=0.520 Sum_probs=108.2
Q ss_pred CEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCC-CCCEEEccCCcCcCCchhhh
Q 036117 331 TFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLP-KLEYLYLFDNKFSGPIPQQI 409 (641)
Q Consensus 331 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~-~L~~L~L~~n~l~~~~~~~~ 409 (641)
..++...+.+... ...+...+.++.+++.+|.+.++ ++...... +|+.|++++|++. .+|..+
T Consensus 96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i--------------~~~~~~~~~nL~~L~l~~N~i~-~l~~~~ 159 (394)
T COG4886 96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDI--------------PPLIGLLKSNLKELDLSDNKIE-SLPSPL 159 (394)
T ss_pred ceeeccccccccC-chhhhcccceeEEecCCcccccC--------------ccccccchhhcccccccccchh-hhhhhh
Confidence 3566666666422 22334445666666666665544 23333342 6777777777666 344456
Q ss_pred hCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccC
Q 036117 410 GNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICR 489 (641)
Q Consensus 410 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 489 (641)
..+++|+.|++++|++. .++......+.|+.|++++|.+. .+|....... .|+++.+++|+.. ..+..+..
T Consensus 160 ~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~------~L~~l~~~~N~~~-~~~~~~~~ 230 (394)
T COG4886 160 RNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLS------ALEELDLSNNSII-ELLSSLSN 230 (394)
T ss_pred hccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhh------hhhhhhhcCCcce-ecchhhhh
Confidence 66677777777777766 44444445666667777776665 4444332222 4666666666422 34444555
Q ss_pred CCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCC
Q 036117 490 GGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLT 556 (641)
Q Consensus 490 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~ 556 (641)
+..+..+.+.+|++. ..+..+..++.+++|++++|.++.... ++.+.+++.|++++|.+....+
T Consensus 231 ~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 231 LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 555555555555554 223444555555555655555553322 4555555555655555554444
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=2e-11 Score=112.46 Aligned_cols=136 Identities=27% Similarity=0.270 Sum_probs=90.3
Q ss_pred cccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCC
Q 036117 486 GICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNL 565 (641)
Q Consensus 486 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L 565 (641)
.+.....|+++|+++|.++ .+.++..-.|.++.|+++.|.+... ..+..+++|+.||+|+|.++.. ...-..+.++
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNI 354 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNI 354 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCE
Confidence 3444556777777777776 4444555567777888888777632 2366777888888888876632 2222356677
Q ss_pred CEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccC-CccccCCCCCCEEeCcCCCCcccC
Q 036117 566 SNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKI-PAQLFRSSFLIRLNLRRNQLSDKI 627 (641)
Q Consensus 566 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i-p~~l~~~~~L~~l~l~~n~l~~~~ 627 (641)
+.|.|+.|.+... ++++.+-+|..||+++|++...- -.++++++-|+.+.+.+|++.+..
T Consensus 355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 7888888877532 55777778888888888776321 246777777888888888877543
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.1e-10 Score=103.69 Aligned_cols=123 Identities=24% Similarity=0.282 Sum_probs=39.0
Q ss_pred CCCCCceEeccCCcccCCCccccc-cCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhh-hcCCCCC
Q 036117 489 RGGNLIYLTANVNKLVGPIPESLW-NCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNW-GKCTNLS 566 (641)
Q Consensus 489 ~~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~-~~l~~L~ 566 (641)
++..+++|++++|.+.. + +.+. .+.+|+.|++++|.+... ..+..++.|++|++++|.++.. .+.+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence 34456777777777763 2 2343 456677777777777643 2355667777777777777743 2233 3567777
Q ss_pred EEeCcCCcCcccC-CccccCCCCCCEEeCCCCcCcccCCc----cccCCCCCCEEe
Q 036117 567 NFRISGNRIKGGI-PAELGNLTYLQNLDIFDNQLTGKIPA----QLFRSSFLIRLN 617 (641)
Q Consensus 567 ~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~ip~----~l~~~~~L~~l~ 617 (641)
+|++++|++...- -..+..+++|++|+|.+|++... +. -+..+++|+.||
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence 7777777765321 14456667777777777777632 21 233456666665
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.1e-10 Score=103.70 Aligned_cols=126 Identities=28% Similarity=0.300 Sum_probs=39.6
Q ss_pred CCCCCCCCEEECCCCCCCccCchhcc-CCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhc-cCCCC
Q 036117 84 FSAFPNLTALNLNMNNLVGSIPAGIG-NATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQL-SNLQN 161 (641)
Q Consensus 84 ~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~ 161 (641)
+.+..++++|+|++|.++.. +.++ .+.+|+.|++++|.++.. ..+..+++|++|++++|+++.. ...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence 44455678888888877632 2344 467788888888888743 2466778888888888888743 3333 45777
Q ss_pred CcEEEeccccCCCCCC-cccCCCCCCCEEEcCCCCCCCCch----hhcCCCCCcEEEe
Q 036117 162 AWLLRIGANYLEDPDP-VKFKGMASLTDLWLDYNLLEKFPS----FIAECSKLMFLDL 214 (641)
Q Consensus 162 L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~~~~~~l~~----~l~~~~~L~~L~l 214 (641)
|++|++++|++.+... ..+..+++|++|++.+|++..-+. .+..+|+|+.||-
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 8888888877765432 344555666666666665532221 3344444444443
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.8e-11 Score=116.42 Aligned_cols=211 Identities=23% Similarity=0.174 Sum_probs=121.5
Q ss_pred CCCCCCCEEECCCCCCCccCc-hhccCCCCCCEEECCCCcCCCCC--ccccCCCCCCCEEEcccccCCCCCChhc-cCCC
Q 036117 85 SAFPNLTALNLNMNNLVGSIP-AGIGNATKLILLDLSSNNLTNPI--PPEIGYLSDLRVLLLYNNSLTGQIPHQL-SNLQ 160 (641)
Q Consensus 85 ~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~ 160 (641)
+++..|+++.|.++.+..... .....|++++.|||++|-+.... ..-...+++|+.|+++.|++........ ..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 356667777776666542211 34556777777777777665331 1223466777777777776653222211 2456
Q ss_pred CCcEEEeccccCCCCCCc-ccCCCCCCCEEEcCCCC-CCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEe
Q 036117 161 NAWLLRIGANYLEDPDPV-KFKGMASLTDLWLDYNL-LEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLN 238 (641)
Q Consensus 161 ~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~~~-~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 238 (641)
+|+.|.++.|.++..... ....+|+|+.|.+..|. +..-......++.|+.|||++|++...-.....+.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 677777777766633222 23556777777777773 2222223344566777777777766322222336677777777
Q ss_pred ccCCccccc-CCcc-----cCCCCCCCEEEcCCCcCCcc-CCcccCCCCcccEeeeeccccccc
Q 036117 239 LTKNSFEGE-IPRE-----IKTFPKLRHLKLGQNKLTGT-IPDEIGLLSNLEILEFHENLFHGL 295 (641)
Q Consensus 239 l~~n~~~~~-~~~~-----l~~l~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~l~~n~~~~~ 295 (641)
++.+.+.+. .|+. ...+++|++|++..|++... .-..+..+++|+.|.+..|.+...
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 777776542 2222 34567888888888887421 112344566777777777776644
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=5.5e-11 Score=115.36 Aligned_cols=9 Identities=22% Similarity=1.069 Sum_probs=5.7
Q ss_pred cccceeeCC
Q 036117 53 NWNGIQCNE 61 (641)
Q Consensus 53 ~~~gv~c~~ 61 (641)
.|.||..++
T Consensus 30 ~w~GvEWDd 38 (505)
T KOG3207|consen 30 KWYGVEWDD 38 (505)
T ss_pred cceeeEecC
Confidence 477776654
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=7.7e-11 Score=108.64 Aligned_cols=59 Identities=27% Similarity=0.421 Sum_probs=24.6
Q ss_pred CCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCccc-CCccccCCCCCCEEeCCCCcCc
Q 036117 540 DLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGG-IPAELGNLTYLQNLDIFDNQLT 600 (641)
Q Consensus 540 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~ 600 (641)
+.++|.+++|.+... ..++.+.+|..||+++|++... -...+++++.|+.+.|.+|++.
T Consensus 353 NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred CEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 344444444443321 2233444444444444444321 1133444555555555555544
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=2.8e-10 Score=126.30 Aligned_cols=128 Identities=24% Similarity=0.325 Sum_probs=97.8
Q ss_pred CEEEEEcCCCCC-ccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEE
Q 036117 64 SISEINLANSGL-DGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLL 142 (641)
Q Consensus 64 ~v~~l~l~~~~~-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 142 (641)
.++++-+..+.. -..++...|..++.|++|||++|.-.+.+|..++.+-+||+|+++++.+. .+|..+++++.|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 577777777652 22333244889999999999998777789999999999999999999999 8999999999999999
Q ss_pred cccccCCCCCChhccCCCCCcEEEecccc--CCCCCCcccCCCCCCCEEEcC
Q 036117 143 LYNNSLTGQIPHQLSNLQNAWLLRIGANY--LEDPDPVKFKGMASLTDLWLD 192 (641)
Q Consensus 143 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~--~~~~~~~~l~~l~~L~~L~l~ 192 (641)
+..+.....+|.....+++|++|.+.... ........+..+.+|+.+...
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 99987666667788889999999997654 122222333444444444443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.75 E-value=5e-09 Score=76.28 Aligned_cols=59 Identities=27% Similarity=0.495 Sum_probs=28.6
Q ss_pred CCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCc
Q 036117 540 DLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQ 598 (641)
Q Consensus 540 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 598 (641)
+|++|++++|+++...+..|.++++|++|++++|++....|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34445555554444444444445555555555555544444444555555555555444
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=1.2e-08 Score=74.27 Aligned_cols=61 Identities=23% Similarity=0.437 Sum_probs=38.7
Q ss_pred CCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcC
Q 036117 515 TGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRI 575 (641)
Q Consensus 515 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l 575 (641)
|+|++|++++|++....+..|..+++|++|++++|+++...+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3456666666666655555666666666666666666666666666666666666666653
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.67 E-value=2.5e-09 Score=111.46 Aligned_cols=129 Identities=29% Similarity=0.294 Sum_probs=63.9
Q ss_pred CCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEE
Q 036117 86 AFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLL 165 (641)
Q Consensus 86 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 165 (641)
.+..++.+++..|.+.. +-..+..+++|++|++.+|.+... ...+..+++|++|++++|.|+.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 34455555555555542 222345566666666666666532 22245556666666666665533 123344445555
Q ss_pred EeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchh-hcCCCCCcEEEeeCCcCC
Q 036117 166 RIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSF-IAECSKLMFLDLSDNLIM 220 (641)
Q Consensus 166 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-l~~~~~L~~L~l~~~~~~ 220 (641)
++++|.+..+. .+..++.|+.+++++|.+..+... ...+.+++.+++.+|.+.
T Consensus 146 ~l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 146 NLSGNLISDIS--GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred eeccCcchhcc--CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 55555554332 222245555555555555444332 344445555555555443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=4.3e-09 Score=109.61 Aligned_cols=129 Identities=26% Similarity=0.280 Sum_probs=78.6
Q ss_pred CCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccC
Q 036117 302 NLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKL 381 (641)
Q Consensus 302 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~ 381 (641)
.+..++.+.+..|.+.. ....+..+.+|+.+++.+|++... ...+..+++|+.|++++|.|+.+
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i-------------- 133 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL-------------- 133 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--------------
Confidence 44555666666666644 223356667778888888777733 22255667777777777776665
Q ss_pred CcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCc-ccccCCCCCCEEEccCCcCc
Q 036117 382 PPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIP-STIGNLSSLVKLSLSSNQLT 450 (641)
Q Consensus 382 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~ 450 (641)
..+..++.|+.|++++|.+... ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus 134 -~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 134 -EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred -cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 2344455577777777776633 234456677777777777663222 1 355666666667666654
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.1e-09 Score=99.35 Aligned_cols=130 Identities=25% Similarity=0.260 Sum_probs=76.0
Q ss_pred CCCEEECCCCCCCc-cCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEccccc-CCCC-CChhccCCCCCcEE
Q 036117 89 NLTALNLNMNNLVG-SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNS-LTGQ-IPHQLSNLQNAWLL 165 (641)
Q Consensus 89 ~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-~~~~-~~~~l~~l~~L~~L 165 (641)
+|++|||+...++. .+...++.|.+|+.|.+.++++.+.+...+.+-.+|+.|+++.+. ++.. ..-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 57788888777653 234456677888888888888877777777777788888887764 3321 11235667777777
Q ss_pred EeccccCCCCCCc-ccCC-CCCCCEEEcCCCCC----CCCchhhcCCCCCcEEEeeCCc
Q 036117 166 RIGANYLEDPDPV-KFKG-MASLTDLWLDYNLL----EKFPSFIAECSKLMFLDLSDNL 218 (641)
Q Consensus 166 ~l~~n~~~~~~~~-~l~~-l~~L~~L~l~~~~~----~~l~~~l~~~~~L~~L~l~~~~ 218 (641)
+++.+.+...... .... -++|+.|+++++.- ..+......+++|.+||+++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 7777664433211 1111 23556666655532 2233334445555555555443
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=3.4e-08 Score=91.42 Aligned_cols=185 Identities=21% Similarity=0.209 Sum_probs=119.5
Q ss_pred CCCCCCEEECCCCCCCc--cCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCC-CCChhccCCCCC
Q 036117 86 AFPNLTALNLNMNNLVG--SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTG-QIPHQLSNLQNA 162 (641)
Q Consensus 86 ~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L 162 (641)
...+++++||.+|.+++ .+...+.++|+|++|+++.|.+...+-..=...++|++|-|.+..+.- .....+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 56789999999999874 355667899999999999998875432211356789999998877652 344567788889
Q ss_pred cEEEeccccCCCCCC--cccCC-CCCCCEEEcCCCCCC---CCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcE
Q 036117 163 WLLRIGANYLEDPDP--VKFKG-MASLTDLWLDYNLLE---KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236 (641)
Q Consensus 163 ~~L~l~~n~~~~~~~--~~l~~-l~~L~~L~l~~~~~~---~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 236 (641)
+.|.++.|.+..... ..... -+.+++|+...|... .+-..-.-++++..+.+..|.+...-...-+..++.+-.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 999888885332211 11222 235666666666542 222233446777778888777764444444455666667
Q ss_pred EeccCCccccc-CCcccCCCCCCCEEEcCCCcCCc
Q 036117 237 LNLTKNSFEGE-IPREIKTFPKLRHLKLGQNKLTG 270 (641)
Q Consensus 237 L~l~~n~~~~~-~~~~l~~l~~L~~L~L~~~~l~~ 270 (641)
|+++.+++.+- ..+.+..++.|..|.+.++.+..
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 77777766531 22345566677777777666553
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=9e-10 Score=101.71 Aligned_cols=158 Identities=21% Similarity=0.147 Sum_probs=71.8
Q ss_pred CCCCCCEEEcCCCCC-CCCchhhcCCCCCcEEEeeCCc-CCCCCChhhhcCCCCCcEEeccCCcccccCCccc-C-CCCC
Q 036117 182 GMASLTDLWLDYNLL-EKFPSFIAECSKLMFLDLSDNL-IMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREI-K-TFPK 257 (641)
Q Consensus 182 ~l~~L~~L~l~~~~~-~~l~~~l~~~~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~-~l~~ 257 (641)
.|.+|+.|.+.++.+ +.+...+.+..+|+.|+++.+. ++.......+.+++.|..|++++|.........+ . --++
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~ 287 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET 287 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence 344444444444444 3333344444455555554432 2211112233455555555555554332211111 1 1234
Q ss_pred CCEEEcCCCcCC---ccCCcccCCCCcccEeeeeccc-ccccCccccCCCCCCCeeeccCccCCCCCCc---CCCCCCCC
Q 036117 258 LRHLKLGQNKLT---GTIPDEIGLLSNLEILEFHENL-FHGLIPSSLGNLRRLQRLNLKSAGLNSSIPK---ELGFCANL 330 (641)
Q Consensus 258 L~~L~L~~~~l~---~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~l~~~~~L 330 (641)
|+.|+++++.-. ..+..-...+++|.+||+++|. ++......+.+++.|+++.++.|.. ..|. .+...|.|
T Consensus 288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl 365 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSL 365 (419)
T ss_pred hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcce
Confidence 555555554211 0111112356666666666653 2222334455666677777666642 2222 34556777
Q ss_pred CEEEccCcccc
Q 036117 331 TFLELSINNLT 341 (641)
Q Consensus 331 ~~L~l~~n~l~ 341 (641)
.+|++.++--.
T Consensus 366 ~yLdv~g~vsd 376 (419)
T KOG2120|consen 366 VYLDVFGCVSD 376 (419)
T ss_pred EEEEeccccCc
Confidence 77777765433
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.47 E-value=1.1e-09 Score=112.70 Aligned_cols=126 Identities=23% Similarity=0.192 Sum_probs=72.7
Q ss_pred CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCc-ccCCCCCCcEEeC
Q 036117 468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITN-ALGIYPDLQYIDL 546 (641)
Q Consensus 468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L 546 (641)
.|...++++|.+. .+...+.-++.++.|++++|++..-. .+..|++|+.|||+.|.+.. +|. .-..+. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhhh-heeeee
Confidence 5777777777775 45555655666777777777765322 45666667777777666652 222 112222 666666
Q ss_pred CCCcccccCChhhhcCCCCCEEeCcCCcCcccCC-ccccCCCCCCEEeCCCCcCc
Q 036117 547 GDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIP-AELGNLTYLQNLDIFDNQLT 600 (641)
Q Consensus 547 s~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~ 600 (641)
++|.++.. ..+.++.+|+.||+++|-+.+.-. ..++.+.+|++|.|.+|++-
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 66665533 235566666666666665543211 22445556666666666664
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.45 E-value=9.1e-09 Score=84.05 Aligned_cols=138 Identities=22% Similarity=0.269 Sum_probs=106.8
Q ss_pred CceEeccCCcccCCCc---cccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEe
Q 036117 493 LIYLTANVNKLVGPIP---ESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFR 569 (641)
Q Consensus 493 L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 569 (641)
+..++++.|.+. .++ ..+.....|+.+++++|.+....+..-..+|..+.|++++|.++ .+|+++..++.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 455667777665 233 33455667888899999998665555566789999999999999 6677899999999999
Q ss_pred CcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCcccccCC
Q 036117 570 ISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKL 634 (641)
Q Consensus 570 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p~~~~~l 634 (641)
++.|++. ..|..+..+.++..|+..+|... +||..+..-+..-..++.++++.+..|..+..+
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa~ 169 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQAL 169 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccccc
Confidence 9999998 66777777999999999999886 788775544445556788999998888665443
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.33 E-value=2e-07 Score=85.34 Aligned_cols=87 Identities=23% Similarity=0.190 Sum_probs=37.1
Q ss_pred CCCCCEEEcCCCCCCCCch-----hhcCCCCCcEEEeeCCcCCCCCC----hhhhcCCCCCcEEeccCCcccccC----C
Q 036117 183 MASLTDLWLDYNLLEKFPS-----FIAECSKLMFLDLSDNLIMGHIP----IEQLTHLENLEYLNLTKNSFEGEI----P 249 (641)
Q Consensus 183 l~~L~~L~l~~~~~~~l~~-----~l~~~~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~~----~ 249 (641)
-|.|++..+..|.+..-+. .+..-..|+.+.+..|.+.-... ..-+..+.+|+.||++.|.++-.. .
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 3455555555555533332 22222355555555555541100 001123445555555555444211 1
Q ss_pred cccCCCCCCCEEEcCCCcCC
Q 036117 250 REIKTFPKLRHLKLGQNKLT 269 (641)
Q Consensus 250 ~~l~~l~~L~~L~L~~~~l~ 269 (641)
..+...+.|++|.+.+|-++
T Consensus 236 ~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHhcccchhhhccccchhhc
Confidence 12233344555555555444
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=1.4e-07 Score=87.47 Aligned_cols=85 Identities=24% Similarity=0.272 Sum_probs=48.0
Q ss_pred CCCEEEccCCcCcCCch-hhh-hCCCCCCeEecccCcCCc--cCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCC
Q 036117 390 KLEYLYLFDNKFSGPIP-QQI-GNLTNLFDLQLANNFFNG--SIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFG 465 (641)
Q Consensus 390 ~L~~L~L~~n~l~~~~~-~~~-~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~ 465 (641)
.++.+.+.++.+..... ..| ..++.++.+||.+|.+++ .+...+.++|.|+.|+++.|++...+-..-....
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~---- 121 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK---- 121 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc----
Confidence 44455555555543321 112 245677788888887763 3455667788888888888877633221101112
Q ss_pred CCCccEEEccCCccc
Q 036117 466 PRFLRNVSFSYNNFS 480 (641)
Q Consensus 466 ~~~L~~L~ls~n~l~ 480 (641)
+|+.|.+.+..+.
T Consensus 122 --nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 122 --NLRVLVLNGTGLS 134 (418)
T ss_pred --ceEEEEEcCCCCC
Confidence 5666666665553
No 50
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.32 E-value=9e-07 Score=58.66 Aligned_cols=40 Identities=38% Similarity=0.938 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHhcCCCCC---CCCCCCCCCCCCCccccceeeC
Q 036117 20 AQKEAKALLNWKSSLVSSS---LPSWTAINSNSGPCNWNGIQCN 60 (641)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~---~~~W~~~~~~~~~c~~~gv~c~ 60 (641)
+++|++||++||+++..++ +.+|.... +.+||.|.||.|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence 3689999999999998533 88998752 2589999999995
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.20 E-value=3.9e-07 Score=83.52 Aligned_cols=231 Identities=21% Similarity=0.184 Sum_probs=154.9
Q ss_pred CCEEEEEcCCCCCccccC---CcCCCCCCCCCEEECCCCC---CCccCc-------hhccCCCCCCEEECCCCcCCCCCc
Q 036117 63 GSISEINLANSGLDGTLD---GFDFSAFPNLTALNLNMNN---LVGSIP-------AGIGNATKLILLDLSSNNLTNPIP 129 (641)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~---~~~~~~l~~L~~L~L~~n~---~~~~~~-------~~l~~l~~L~~L~L~~n~l~~~~p 129 (641)
..++.++||+|.|..... ...+++-++|+..+++.-- ..+.++ .++..|++|+..+||.|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 567899999998865432 1456677888888887642 222333 345789999999999999887766
Q ss_pred ccc----CCCCCCCEEEcccccCCCC----CC---------hhccCCCCCcEEEeccccCCCCCCcc----cCCCCCCCE
Q 036117 130 PEI----GYLSDLRVLLLYNNSLTGQ----IP---------HQLSNLQNAWLLRIGANYLEDPDPVK----FKGMASLTD 188 (641)
Q Consensus 130 ~~l----~~l~~L~~L~l~~n~~~~~----~~---------~~l~~l~~L~~L~l~~n~~~~~~~~~----l~~l~~L~~ 188 (641)
..+ +.-+.|++|.+++|.+.-. +. ....+-+.|+++.++.|++....... +..-..|++
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 554 5668899999999876421 11 12345678999999999987664432 333368999
Q ss_pred EEcCCCCCCC--C----chhhcCCCCCcEEEeeCCcCCCCCC---hhhhcCCCCCcEEeccCCcccccCCccc------C
Q 036117 189 LWLDYNLLEK--F----PSFIAECSKLMFLDLSDNLIMGHIP---IEQLTHLENLEYLNLTKNSFEGEIPREI------K 253 (641)
Q Consensus 189 L~l~~~~~~~--l----~~~l~~~~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~n~~~~~~~~~l------~ 253 (641)
+.+..|.|.. + -..+..+++|+.||+.+|.++-... ...+...+.|++|.+..|-++......+ .
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~ 269 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEK 269 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhh
Confidence 9999998832 1 2256778999999999998873221 2334667889999999987664433322 2
Q ss_pred CCCCCCEEEcCCCcCCccCCccc-------CCCCcccEeeeeccccc
Q 036117 254 TFPKLRHLKLGQNKLTGTIPDEI-------GLLSNLEILEFHENLFH 293 (641)
Q Consensus 254 ~l~~L~~L~L~~~~l~~~~~~~l-------~~~~~L~~L~l~~n~~~ 293 (641)
..++|..|...+|...+.+...+ ..+|-|..+.+.+|.+.
T Consensus 270 ~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 270 FVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 35778888888887665332211 23445555555555554
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.14 E-value=3.3e-08 Score=102.11 Aligned_cols=128 Identities=30% Similarity=0.271 Sum_probs=100.2
Q ss_pred CCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcC
Q 036117 113 KLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLD 192 (641)
Q Consensus 113 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 192 (641)
.|.+.++++|.+. .+-.++.-++.|+.|||++|+++.. +.+..+++|++||+++|.+..++.....++. |..|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 3556667777766 3445566678889999999988754 3788899999999999988877766666666 8999999
Q ss_pred CCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccc
Q 036117 193 YNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFE 245 (641)
Q Consensus 193 ~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 245 (641)
+|.++++- .+.++.+|+.||+++|-+.+.-....+..+..|+.|+|.+|.+-
T Consensus 241 nN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99887764 37888899999999998887666666677888889999988764
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.93 E-value=2.3e-07 Score=90.25 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=17.8
Q ss_pred CCCCCEEEccCcccc-ccCchhhhcCCCCCeEeCCcc
Q 036117 327 CANLTFLELSINNLT-GSLPLSLASLRQISELGISNN 362 (641)
Q Consensus 327 ~~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~l~~n 362 (641)
...++.+.++++... +..-..+..++.|+.+++-.+
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 345566666665443 223334445556665554443
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=3.9e-05 Score=76.93 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=74.2
Q ss_pred hhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCcccc
Q 036117 409 IGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGIC 488 (641)
Q Consensus 409 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 488 (641)
+..+.+++.|++++|.++ .+|. -.++|++|.+++|.--..+|..+. ++|++|++++|.....+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--------~nLe~L~Ls~Cs~L~sLP~--- 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--------EGLEKLTVCHCPEISGLPE--- 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--------hhhhheEccCccccccccc---
Confidence 455788888999988776 4552 224688888888654445554332 2688888887732224443
Q ss_pred CCCCCceEeccCCccc--CCCccccccCCCCcEEECCCCcCc-c-ccCcccCCCCCCcEEeCCCCcccccCChhhhcCCC
Q 036117 489 RGGNLIYLTANVNKLV--GPIPESLWNCTGLTRVRLEQNRLD-G-DITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTN 564 (641)
Q Consensus 489 ~~~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~l~~n~l~-~-~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 564 (641)
.|+.|++..+... +.+| ++|+.|.+.+++.. . .++. .-.++|++|++++|... ..|..+. .+
T Consensus 113 ---sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~S 178 (426)
T PRK15386 113 ---SVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ES 178 (426)
T ss_pred ---ccceEEeCCCCCcccccCc------chHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--cc
Confidence 4566666544332 2233 23556665432211 0 0111 11256777777776644 2333332 46
Q ss_pred CCEEeCcCC
Q 036117 565 LSNFRISGN 573 (641)
Q Consensus 565 L~~L~L~~n 573 (641)
|+.|+++.+
T Consensus 179 Lk~L~ls~n 187 (426)
T PRK15386 179 LQSITLHIE 187 (426)
T ss_pred CcEEEeccc
Confidence 666766655
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=4.9e-05 Score=76.24 Aligned_cols=135 Identities=20% Similarity=0.199 Sum_probs=74.4
Q ss_pred CCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCC
Q 036117 387 LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGP 466 (641)
Q Consensus 387 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~ 466 (641)
.+.+++.|++++|.++ .+|. -..+|+.|.+++|.-...+|+.+ .++|++|++++|.....+|.
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~----------- 112 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE----------- 112 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-----------
Confidence 3567788888887766 3341 12467888887765433555443 25778888887732223432
Q ss_pred CCccEEEccCCccc--ccCCccccCCCCCceEeccCCccc--CCCccccccCCCCcEEECCCCcCccccCcccCCCCCCc
Q 036117 467 RFLRNVSFSYNNFS--GKLPPGICRGGNLIYLTANVNKLV--GPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQ 542 (641)
Q Consensus 467 ~~L~~L~ls~n~l~--~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 542 (641)
+|+.|+++++... +.+|. +|+.|.+.+++.. ..+|..+ .++|++|++++|... ..|..+. .+|+
T Consensus 113 -sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk 180 (426)
T PRK15386 113 -SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQ 180 (426)
T ss_pred -ccceEEeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCc
Confidence 5677777655432 12332 4556666433211 0111111 156788888777654 2333222 5778
Q ss_pred EEeCCCCc
Q 036117 543 YIDLGDNQ 550 (641)
Q Consensus 543 ~L~Ls~n~ 550 (641)
.|+++.+.
T Consensus 181 ~L~ls~n~ 188 (426)
T PRK15386 181 SITLHIEQ 188 (426)
T ss_pred EEEecccc
Confidence 88877663
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.91 E-value=3.2e-06 Score=92.00 Aligned_cols=150 Identities=22% Similarity=0.301 Sum_probs=79.1
Q ss_pred CCCCEEECCCCcC-CCCCccccC-CCCCCCEEEcccccCCCC-CChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCE
Q 036117 112 TKLILLDLSSNNL-TNPIPPEIG-YLSDLRVLLLYNNSLTGQ-IPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTD 188 (641)
Q Consensus 112 ~~L~~L~L~~n~l-~~~~p~~l~-~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 188 (641)
.+|++||+++... ...-|..++ .+|.|+.|.+++-.+... ......++++|..||+++.+++.. ..++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4566666666432 222333343 356666666665444321 122334566666666666666544 34555666666
Q ss_pred EEcCCCCCCCCc--hhhcCCCCCcEEEeeCCcCCCCC--Ch---hhhcCCCCCcEEeccCCcccccCCccc-CCCCCCCE
Q 036117 189 LWLDYNLLEKFP--SFIAECSKLMFLDLSDNLIMGHI--PI---EQLTHLENLEYLNLTKNSFEGEIPREI-KTFPKLRH 260 (641)
Q Consensus 189 L~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~~~~~~--~~---~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~ 260 (641)
|.+.+-.+..-. ..+.++++|+.||+|........ .. +.-..+|+|+.||++++.+.....+.+ ...++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 666665553322 24666777777777765543211 00 111346788888888777665433332 23445554
Q ss_pred EEc
Q 036117 261 LKL 263 (641)
Q Consensus 261 L~L 263 (641)
+..
T Consensus 280 i~~ 282 (699)
T KOG3665|consen 280 IAA 282 (699)
T ss_pred hhh
Confidence 443
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.85 E-value=3.2e-05 Score=68.19 Aligned_cols=105 Identities=24% Similarity=0.204 Sum_probs=57.2
Q ss_pred CCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCC-CcccCCCCCCCEEE
Q 036117 112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD-PVKFKGMASLTDLW 190 (641)
Q Consensus 112 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~ 190 (641)
.+...+||++|.+... ..|..++.|.+|.+.+|+|+.+-|.--..+++|.+|.+.+|.+.... ...+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3455666666665421 23556666666666666666555544445556666666666554432 23355556666666
Q ss_pred cCCCCCCCCch----hhcCCCCCcEEEeeCCc
Q 036117 191 LDYNLLEKFPS----FIAECSKLMFLDLSDNL 218 (641)
Q Consensus 191 l~~~~~~~l~~----~l~~~~~L~~L~l~~~~ 218 (641)
+-+|++..... .+..+++|+.||...-.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 66665533321 34455556666555443
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.83 E-value=1.1e-06 Score=72.03 Aligned_cols=64 Identities=30% Similarity=0.352 Sum_probs=38.2
Q ss_pred CCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChh
Q 036117 161 NAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIE 226 (641)
Q Consensus 161 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~ 226 (641)
.++++++++|.+++++.. +..++.|+.|+++.|++...|..+..+.++..|+..+|... .++..
T Consensus 78 t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 78 TATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred hhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 444555555555444333 55566666666666666666666666777777777776665 55544
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=2.4e-05 Score=51.90 Aligned_cols=6 Identities=50% Similarity=0.994 Sum_probs=2.1
Q ss_pred EeCCCC
Q 036117 544 IDLGDN 549 (641)
Q Consensus 544 L~Ls~n 549 (641)
|++++|
T Consensus 6 L~l~~N 11 (44)
T PF12799_consen 6 LDLSNN 11 (44)
T ss_dssp EEETSS
T ss_pred EEccCC
Confidence 333333
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=4e-05 Score=50.82 Aligned_cols=36 Identities=36% Similarity=0.678 Sum_probs=16.7
Q ss_pred CCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCc
Q 036117 564 NLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT 600 (641)
Q Consensus 564 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 600 (641)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555554 33334455555555555555544
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.62 E-value=2e-06 Score=83.88 Aligned_cols=294 Identities=21% Similarity=0.154 Sum_probs=137.8
Q ss_pred CCCEEECCCCCCCc--cCchhccCCCCCCEEECCCCc-CCCCCcccc-CCCCCCCEEEccccc-CCCCCCh-hccCCCCC
Q 036117 89 NLTALNLNMNNLVG--SIPAGIGNATKLILLDLSSNN-LTNPIPPEI-GYLSDLRVLLLYNNS-LTGQIPH-QLSNLQNA 162 (641)
Q Consensus 89 ~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~l~~n~-~~~~~~~-~l~~l~~L 162 (641)
.|+.|.++++.=.+ .+-....+++++++|++.++. +++..-..+ ..+++|+++++..|. ++...-. ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46667776664322 122334567777777777664 222211122 356677777776642 3322111 22345556
Q ss_pred cEEEecccc-CCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhh----cCCCCCcEE
Q 036117 163 WLLRIGANY-LEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQL----THLENLEYL 237 (641)
Q Consensus 163 ~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l----~~l~~L~~L 237 (641)
.+++++.+. +++. .+.....+++.++.+.+.+|.-. +...+ ..+..+.++
T Consensus 219 ~~lNlSwc~qi~~~----------------------gv~~~~rG~~~l~~~~~kGC~e~---~le~l~~~~~~~~~i~~l 273 (483)
T KOG4341|consen 219 KYLNLSWCPQISGN----------------------GVQALQRGCKELEKLSLKGCLEL---ELEALLKAAAYCLEILKL 273 (483)
T ss_pred HHhhhccCchhhcC----------------------cchHHhccchhhhhhhhcccccc---cHHHHHHHhccChHhhcc
Confidence 666655543 2221 11222233333333333333211 11111 222334444
Q ss_pred eccCCc-ccccC-CcccCCCCCCCEEEcCCCcCCccCC-ccc-CCCCcccEeeeecccc-cccCcccc-CCCCCCCeeec
Q 036117 238 NLTKNS-FEGEI-PREIKTFPKLRHLKLGQNKLTGTIP-DEI-GLLSNLEILEFHENLF-HGLIPSSL-GNLRRLQRLNL 311 (641)
Q Consensus 238 ~l~~n~-~~~~~-~~~l~~l~~L~~L~L~~~~l~~~~~-~~l-~~~~~L~~L~l~~n~~-~~~~~~~l-~~l~~L~~L~l 311 (641)
++..+. +++.. ...-..+..|+.+..+++...+..+ ..+ .+..+|+.+.++.++. +......+ .+.+.|+.+++
T Consensus 274 nl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~ 353 (483)
T KOG4341|consen 274 NLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDL 353 (483)
T ss_pred chhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence 443332 22111 0111234556666665554322111 111 3456666666666652 22222222 24567777777
Q ss_pred cCccCC--CCCCcCCCCCCCCCEEEccCccccccC-----chhhhcCCCCCeEeCCcccccccceeecccccccccCCcC
Q 036117 312 KSAGLN--SSIPKELGFCANLTFLELSINNLTGSL-----PLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPE 384 (641)
Q Consensus 312 ~~~~~~--~~~~~~l~~~~~L~~L~l~~n~l~~~~-----~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~ 384 (641)
..+... +.+...-.+++.|+++.+++|..-... ...-..+..++.+.+++++...- ..-..
T Consensus 354 e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d------------~~Le~ 421 (483)
T KOG4341|consen 354 EECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD------------ATLEH 421 (483)
T ss_pred cccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH------------HHHHH
Confidence 776542 223333457788888888887543221 11123456777777777765422 12234
Q ss_pred CCCCCCCCEEEccCCc-CcCCchhhh-hCCCCCCeEe
Q 036117 385 IGLLPKLEYLYLFDNK-FSGPIPQQI-GNLTNLFDLQ 419 (641)
Q Consensus 385 l~~~~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~ 419 (641)
+..+++|+.+++-+++ ++......| ..+|++++.-
T Consensus 422 l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 422 LSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred HhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 5567888888888874 332222222 3455555443
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=5.2e-05 Score=82.76 Aligned_cols=134 Identities=16% Similarity=0.223 Sum_probs=76.3
Q ss_pred CCCCEEEcccccC-CCCCChhcc-CCCCCcEEEeccccCCCCC-CcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEE
Q 036117 136 SDLRVLLLYNNSL-TGQIPHQLS-NLQNAWLLRIGANYLEDPD-PVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFL 212 (641)
Q Consensus 136 ~~L~~L~l~~n~~-~~~~~~~l~-~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L 212 (641)
.+|++|++++... ....|..++ .+|.|++|.+.+-.+.... .....++++|+.|+++++++..+ .+++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 5678888877542 223333333 4677777777765544332 23345667777777777777666 556777777777
Q ss_pred EeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccC--C----cccCCCCCCCEEEcCCCcCCc
Q 036117 213 DLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEI--P----REIKTFPKLRHLKLGQNKLTG 270 (641)
Q Consensus 213 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~----~~l~~l~~L~~L~L~~~~l~~ 270 (641)
.+.+-.+...-....+.++++|+.||+|........ . +.-..+|+|+.||.+++.+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 776666553333334456677777777665433111 0 111235566666666555543
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.56 E-value=0.00012 Score=64.81 Aligned_cols=103 Identities=19% Similarity=0.226 Sum_probs=68.5
Q ss_pred CCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccC-CccccCCCCCCEEeC
Q 036117 516 GLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGI-PAELGNLTYLQNLDI 594 (641)
Q Consensus 516 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L 594 (641)
+...+++++|.+.. ...|..++.|.+|.+++|+|+.+.|.--.-++.|+.|.|.+|++.... -..+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 45677888887752 234566788888888888888776655555677888888888774221 133567778888888
Q ss_pred CCCcCcccC---CccccCCCCCCEEeCcC
Q 036117 595 FDNQLTGKI---PAQLFRSSFLIRLNLRR 620 (641)
Q Consensus 595 ~~n~l~~~i---p~~l~~~~~L~~l~l~~ 620 (641)
-+|+....- ---+..+++|+.||...
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 888776331 12244667777777654
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.23 E-value=0.00079 Score=57.51 Aligned_cols=84 Identities=19% Similarity=0.154 Sum_probs=31.0
Q ss_pred cCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCC
Q 036117 82 FDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQN 161 (641)
Q Consensus 82 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 161 (641)
..|.++++|+.+.+.. .+...-..+|..+++|+.+++..+ +...-...|.++++++.+.+.. .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3455555555555543 233233344555555555555443 3322223344444455555543 222222233444444
Q ss_pred CcEEEec
Q 036117 162 AWLLRIG 168 (641)
Q Consensus 162 L~~L~l~ 168 (641)
|+.+.+.
T Consensus 83 l~~i~~~ 89 (129)
T PF13306_consen 83 LKNIDIP 89 (129)
T ss_dssp ECEEEET
T ss_pred ccccccC
Confidence 4444443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.16 E-value=0.001 Score=56.78 Aligned_cols=99 Identities=20% Similarity=0.270 Sum_probs=33.2
Q ss_pred hhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCch-hhcCCCCCcEEEeeCCcCCCCCChhhhcCCC
Q 036117 154 HQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS-FIAECSKLMFLDLSDNLIMGHIPIEQLTHLE 232 (641)
Q Consensus 154 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 232 (641)
..|.++++|+.+.+.++ +..+....|.++++++.+.+.. .+..++. .+..+++|+.+++..+ +. .++...|.++
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~- 103 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIGSSSFSNC- 103 (129)
T ss_dssp TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEHTTTTTT--
T ss_pred hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc-EEchhhhcCC-
Confidence 33444444444444432 3333444444444455555433 2222222 2344555555555443 22 3333444554
Q ss_pred CCcEEeccCCcccccCCcccCCCCCC
Q 036117 233 NLEYLNLTKNSFEGEIPREIKTFPKL 258 (641)
Q Consensus 233 ~L~~L~l~~n~~~~~~~~~l~~l~~L 258 (641)
.++.+.+.. .+.......|.++++|
T Consensus 104 ~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 104 NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp T--EEE-TT-B-SS----GGG-----
T ss_pred CceEEEECC-CccEECCccccccccC
Confidence 566666554 2222333445555444
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.99 E-value=0.00044 Score=64.01 Aligned_cols=109 Identities=25% Similarity=0.264 Sum_probs=68.3
Q ss_pred CccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCC--cccccCChhhhcCCCCCEEeCcCCcCccc-CCccc
Q 036117 507 IPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDN--QLSGVLTSNWGKCTNLSNFRISGNRIKGG-IPAEL 583 (641)
Q Consensus 507 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l 583 (641)
+.........|+.+++.+..++. ...+..+|+|++|++|.| .+.+..+.-...+++|++++++.|++... -...+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 44444455666777777766652 234566788899999998 55555555556668889999999887631 11234
Q ss_pred cCCCCCCEEeCCCCcCcccCC---ccccCCCCCCEEe
Q 036117 584 GNLTYLQNLDIFDNQLTGKIP---AQLFRSSFLIRLN 617 (641)
Q Consensus 584 ~~l~~L~~L~L~~n~l~~~ip---~~l~~~~~L~~l~ 617 (641)
..+.+|..|++.+|..++.-- .-+..+++|..+|
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 566777888888887765211 1122346666554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.77 E-value=0.00083 Score=62.21 Aligned_cols=39 Identities=28% Similarity=0.326 Sum_probs=16.1
Q ss_pred CCCCCCEEECCCC--cCCCCCccccCCCCCCCEEEcccccC
Q 036117 110 NATKLILLDLSSN--NLTNPIPPEIGYLSDLRVLLLYNNSL 148 (641)
Q Consensus 110 ~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~l~~n~~ 148 (641)
.+++|++|.++.| .+.+.++.....+++|+++++++|++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 3444444444444 23322222223334444444444443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=6.7e-05 Score=69.45 Aligned_cols=101 Identities=28% Similarity=0.355 Sum_probs=70.5
Q ss_pred CCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCC
Q 036117 303 LRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLP 382 (641)
Q Consensus 303 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~ 382 (641)
+.+.++|+..+|.+... .....++.|++|.++-|+++..-| +..|+.|++|+|..|.|..+.+|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL------------ 81 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDEL------------ 81 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHH------------
Confidence 44567788888877554 234567888888888888885443 56788888888888887765432
Q ss_pred cCCCCCCCCCEEEccCCcCcCCchh-----hhhCCCCCCeEe
Q 036117 383 PEIGLLPKLEYLYLFDNKFSGPIPQ-----QIGNLTNLFDLQ 419 (641)
Q Consensus 383 ~~l~~~~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~ 419 (641)
..+.++|+|+.|.|..|...+..+. .+..+|+|++||
T Consensus 82 ~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 2355678888888888876665443 245677777776
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.55 E-value=0.00033 Score=75.23 Aligned_cols=110 Identities=20% Similarity=0.132 Sum_probs=52.7
Q ss_pred CCCCCEEEcCCCCC-CC--CchhhcCCCCCcEEEeeCC-cCCCCC---ChhhhcCCCCCcEEeccCCc-ccccCCcccC-
Q 036117 183 MASLTDLWLDYNLL-EK--FPSFIAECSKLMFLDLSDN-LIMGHI---PIEQLTHLENLEYLNLTKNS-FEGEIPREIK- 253 (641)
Q Consensus 183 l~~L~~L~l~~~~~-~~--l~~~l~~~~~L~~L~l~~~-~~~~~~---~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~- 253 (641)
++.|+.+.+.++.- .. +-.....++.|+.|+++++ ...... .......+++|+.++++++. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555532 22 3344555666666666652 111111 11223445666666666665 4433222332
Q ss_pred CCCCCCEEEcCCCc-CCccCCc-ccCCCCcccEeeeecccc
Q 036117 254 TFPKLRHLKLGQNK-LTGTIPD-EIGLLSNLEILEFHENLF 292 (641)
Q Consensus 254 ~l~~L~~L~L~~~~-l~~~~~~-~l~~~~~L~~L~l~~n~~ 292 (641)
.+++|++|.+.+|. +++.... ....++.|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 25666666665554 3322111 123455666666666554
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.44 E-value=0.00031 Score=75.38 Aligned_cols=186 Identities=24% Similarity=0.171 Sum_probs=81.8
Q ss_pred CCCCcEEEecccc-CCCC-CCcccCCCCCCCEEEcCCC-CC-CC----CchhhcCCCCCcEEEeeCCcCCCCCChhhh-c
Q 036117 159 LQNAWLLRIGANY-LEDP-DPVKFKGMASLTDLWLDYN-LL-EK----FPSFIAECSKLMFLDLSDNLIMGHIPIEQL-T 229 (641)
Q Consensus 159 l~~L~~L~l~~n~-~~~~-~~~~l~~l~~L~~L~l~~~-~~-~~----l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l-~ 229 (641)
++.|+.+.+.++. +... .......+++|+.|+++++ .. .. .......+++|+.|+++.+....+.....+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4445555554443 1111 1223344555555555542 11 11 112344456666666666662222222222 2
Q ss_pred CCCCCcEEeccCCc-ccccC-CcccCCCCCCCEEEcCCCcCCcc--CCcccCCCCcccEeeeecccccccCccccCCCCC
Q 036117 230 HLENLEYLNLTKNS-FEGEI-PREIKTFPKLRHLKLGQNKLTGT--IPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRR 305 (641)
Q Consensus 230 ~l~~L~~L~l~~n~-~~~~~-~~~l~~l~~L~~L~L~~~~l~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~ 305 (641)
.+++|++|.+.++. +++.. ......++.|++|++++|..... +......+++++.+.+.... .++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c~~ 336 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GCPS 336 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CCcc
Confidence 36667777666555 33221 12234566677777776654311 11112334555544332221 1333
Q ss_pred CCeeeccCccCC---CCCCcCCCCCCCCCEEEccCccccccC-chhhhcCCCC
Q 036117 306 LQRLNLKSAGLN---SSIPKELGFCANLTFLELSINNLTGSL-PLSLASLRQI 354 (641)
Q Consensus 306 L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L 354 (641)
++.+.+...... .........++.++.+.+..+...... ...+..|+.+
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 444443332221 112223456677777777776633222 2344455555
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.00011 Score=68.13 Aligned_cols=86 Identities=26% Similarity=0.336 Sum_probs=40.9
Q ss_pred eCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCC-CccccCCCCC
Q 036117 59 CNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNP-IPPEIGYLSD 137 (641)
Q Consensus 59 c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~ 137 (641)
|++...|..|++.++++.+. ....+|+.|++|.|+-|+|+.. ..+..|++|++|.|+.|.|.+. -...+.++++
T Consensus 15 ~sdl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 15 CSDLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred hhHHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 33334455555555555422 2234555556666655555422 2245555555555555555422 0112344555
Q ss_pred CCEEEcccccCC
Q 036117 138 LRVLLLYNNSLT 149 (641)
Q Consensus 138 L~~L~l~~n~~~ 149 (641)
|++|.|..|.-.
T Consensus 90 Lr~LWL~ENPCc 101 (388)
T KOG2123|consen 90 LRTLWLDENPCC 101 (388)
T ss_pred hhhHhhccCCcc
Confidence 555555554433
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.32 E-value=0.0056 Score=33.60 Aligned_cols=17 Identities=47% Similarity=0.728 Sum_probs=8.0
Q ss_pred CCEEeCCCCcCcccCCcc
Q 036117 589 LQNLDIFDNQLTGKIPAQ 606 (641)
Q Consensus 589 L~~L~L~~n~l~~~ip~~ 606 (641)
|++|||++|+++ .+|.+
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 444555555444 44443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.77 E-value=0.01 Score=32.50 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=11.9
Q ss_pred CCEEeCcCCCCcccCcccccC
Q 036117 613 LIRLNLRRNQLSDKIPAEIGK 633 (641)
Q Consensus 613 L~~l~l~~n~l~~~~p~~~~~ 633 (641)
|++||+++|+++ .+|..|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 556666666666 56655544
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.19 E-value=0.00027 Score=73.85 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=43.1
Q ss_pred CCCCcEEECCCCcCcccc----CcccCCCCC-CcEEeCCCCcccccCC----hhhhcC-CCCCEEeCcCCcCcccCC---
Q 036117 514 CTGLTRVRLEQNRLDGDI----TNALGIYPD-LQYIDLGDNQLSGVLT----SNWGKC-TNLSNFRISGNRIKGGIP--- 580 (641)
Q Consensus 514 ~~~L~~L~l~~n~l~~~~----~~~~~~l~~-L~~L~Ls~n~~~~~~~----~~~~~l-~~L~~L~L~~n~l~~~~p--- 580 (641)
..+++.|++.+|.++... ...+...+. +..|++.+|.+.+... ..+..+ ..++.++++.|+++..-.
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 445566666666554221 122233333 5556666666553311 222233 445666666666654322
Q ss_pred -ccccCCCCCCEEeCCCCcCcc
Q 036117 581 -AELGNLTYLQNLDIFDNQLTG 601 (641)
Q Consensus 581 -~~l~~l~~L~~L~L~~n~l~~ 601 (641)
..+..++.++++.+..|++..
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhhhHHHHHhhcccCcccc
Confidence 333444566666666666543
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.45 E-value=0.00099 Score=69.73 Aligned_cols=186 Identities=24% Similarity=0.192 Sum_probs=91.4
Q ss_pred CCEEECCCCCCCcc----CchhccCCCCCCEEECCCCcCCCCCccc----cCCC-CCCCEEEcccccCCCC----CChhc
Q 036117 90 LTALNLNMNNLVGS----IPAGIGNATKLILLDLSSNNLTNPIPPE----IGYL-SDLRVLLLYNNSLTGQ----IPHQL 156 (641)
Q Consensus 90 L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~~----l~~l-~~L~~L~l~~n~~~~~----~~~~l 156 (641)
+..+.|.+|.+.+. +...+.....|..|++++|.+.+.-... +... ..+++|++..|.++.. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66677777766543 2334556677777777777776432211 2222 4466666666666532 33444
Q ss_pred cCCCCCcEEEeccccCCCCC----CcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCC---hhhhc
Q 036117 157 SNLQNAWLLRIGANYLEDPD----PVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIP---IEQLT 229 (641)
Q Consensus 157 ~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~---~~~l~ 229 (641)
.....++.++++.|.+.... ...+.. .+....++++|.+++|.++...- ...+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~-------------------~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~ 229 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALES-------------------AASPLSSLETLKLSRCGVTSSSCALLDEVLA 229 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhh-------------------hhcccccHHHHhhhhcCcChHHHHHHHHHHh
Confidence 45566666666666543110 011111 11223344444444444431100 01112
Q ss_pred CCCC-CcEEeccCCccccc----CCcccCCC-CCCCEEEcCCCcCCccCCc----ccCCCCcccEeeeecccccc
Q 036117 230 HLEN-LEYLNLTKNSFEGE----IPREIKTF-PKLRHLKLGQNKLTGTIPD----EIGLLSNLEILEFHENLFHG 294 (641)
Q Consensus 230 ~l~~-L~~L~l~~n~~~~~----~~~~l~~l-~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~l~~n~~~~ 294 (641)
..+. +..+++..|.+.+. ....+..+ ..+++++++.|.++..... .+..++.++++.++.|.+..
T Consensus 230 ~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 230 SGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred ccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2223 44455555554422 11223333 4566777777766643322 23455677777777776653
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.95 E-value=0.033 Score=49.80 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=51.0
Q ss_pred CceEeccCCcccCCCccccccCCCCcEEECCCCcCcccc-Cccc-CCCCCCcEEeCCCCc-ccccCChhhhcCCCCCEEe
Q 036117 493 LIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDI-TNAL-GIYPDLQYIDLGDNQ-LSGVLTSNWGKCTNLSNFR 569 (641)
Q Consensus 493 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~-~~l~~L~~L~Ls~n~-~~~~~~~~~~~l~~L~~L~ 569 (641)
++.++-+++.+..+--+.+..++.++.|.+.+|.--+.. -..+ +-.++|+.|+|++|+ |++.....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 444555555555444444555666666666655432211 0111 235788999999885 8877777888888888888
Q ss_pred CcCCcC
Q 036117 570 ISGNRI 575 (641)
Q Consensus 570 L~~n~l 575 (641)
+.+=+.
T Consensus 183 l~~l~~ 188 (221)
T KOG3864|consen 183 LYDLPY 188 (221)
T ss_pred hcCchh
Confidence 876543
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.40 E-value=0.11 Score=26.36 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=3.6
Q ss_pred CCEEeCCCCcC
Q 036117 589 LQNLDIFDNQL 599 (641)
Q Consensus 589 L~~L~L~~n~l 599 (641)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.84 E-value=0.37 Score=27.49 Aligned_cols=19 Identities=37% Similarity=0.663 Sum_probs=10.5
Q ss_pred CCCCEEeCCCCcCcccCCcc
Q 036117 587 TYLQNLDIFDNQLTGKIPAQ 606 (641)
Q Consensus 587 ~~L~~L~L~~n~l~~~ip~~ 606 (641)
++|+.|+|++|++. .+|.+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45566666666655 45543
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.84 E-value=0.37 Score=27.49 Aligned_cols=19 Identities=37% Similarity=0.663 Sum_probs=10.5
Q ss_pred CCCCEEeCCCCcCcccCCcc
Q 036117 587 TYLQNLDIFDNQLTGKIPAQ 606 (641)
Q Consensus 587 ~~L~~L~L~~n~l~~~ip~~ 606 (641)
++|+.|+|++|++. .+|.+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45566666666655 45543
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.43 E-value=0.13 Score=28.71 Aligned_cols=16 Identities=38% Similarity=0.765 Sum_probs=7.5
Q ss_pred CCCcEEeCCCCccccc
Q 036117 539 PDLQYIDLGDNQLSGV 554 (641)
Q Consensus 539 ~~L~~L~Ls~n~~~~~ 554 (641)
++|++|+|++|++++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4555555555555544
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.09 E-value=0.11 Score=46.57 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=46.2
Q ss_pred CCcEEECCCCcCccccCcccCCCCCCcEEeCCCCc-ccccCChhhh-cCCCCCEEeCcCCc-CcccCCccccCCCCCCEE
Q 036117 516 GLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ-LSGVLTSNWG-KCTNLSNFRISGNR-IKGGIPAELGNLTYLQNL 592 (641)
Q Consensus 516 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L 592 (641)
.++.++-++..+..+-..-+..++.++.|.+.+|. +.+.-.+.++ -.++|+.|++++|+ |+.---.++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 35666767776666555566666777777777665 2222111221 23566777777664 444444555566666666
Q ss_pred eCCCCc
Q 036117 593 DIFDNQ 598 (641)
Q Consensus 593 ~L~~n~ 598 (641)
.+.+=+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 555443
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.31 E-value=0.019 Score=52.33 Aligned_cols=84 Identities=21% Similarity=0.249 Sum_probs=38.8
Q ss_pred CCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCc
Q 036117 84 FSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAW 163 (641)
Q Consensus 84 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 163 (641)
+..+...+.||++.|++. .+...|+-++.+..||++.|.+. ..|..++....++.+++..|..+ ..|.+++..++++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 334444555555555443 12223444444555555555444 34445555455555555444433 3444444444444
Q ss_pred EEEeccc
Q 036117 164 LLRIGAN 170 (641)
Q Consensus 164 ~L~l~~n 170 (641)
++++.++
T Consensus 115 ~~e~k~~ 121 (326)
T KOG0473|consen 115 KNEQKKT 121 (326)
T ss_pred hhhhccC
Confidence 4444443
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.07 E-value=0.025 Score=51.54 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=64.8
Q ss_pred cccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCC
Q 036117 511 LWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQ 590 (641)
Q Consensus 511 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 590 (641)
+......+.||++.|++.. .-..|+.++.+..||++.|.+. ..|+.+++...+..+++..|..+ ..|..++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 3344556677777776642 2234455667778888888876 67788888888888888888876 7788888888888
Q ss_pred EEeCCCCcCcccC
Q 036117 591 NLDIFDNQLTGKI 603 (641)
Q Consensus 591 ~L~L~~n~l~~~i 603 (641)
++++..|.+...+
T Consensus 115 ~~e~k~~~~~~~~ 127 (326)
T KOG0473|consen 115 KNEQKKTEFFRKL 127 (326)
T ss_pred hhhhccCcchHHH
Confidence 8888888876443
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.44 E-value=0.87 Score=25.91 Aligned_cols=14 Identities=57% Similarity=0.937 Sum_probs=6.7
Q ss_pred CCCcEEeCCCCccc
Q 036117 539 PDLQYIDLGDNQLS 552 (641)
Q Consensus 539 ~~L~~L~Ls~n~~~ 552 (641)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444555555444
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.44 E-value=0.87 Score=25.91 Aligned_cols=14 Identities=57% Similarity=0.937 Sum_probs=6.7
Q ss_pred CCCcEEeCCCCccc
Q 036117 539 PDLQYIDLGDNQLS 552 (641)
Q Consensus 539 ~~L~~L~Ls~n~~~ 552 (641)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444555555444
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=66.57 E-value=34 Score=35.44 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=18.4
Q ss_pred CCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccc
Q 036117 304 RRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTG 342 (641)
Q Consensus 304 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 342 (641)
+.+++++++.|.+....|..+..-. --+.++.|+.+.
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lss 201 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSS 201 (553)
T ss_pred chhhhhccCCCcccccCCccccCCC--Cccchhhhhhhh
Confidence 4566777777766555444332211 114455555543
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.86 E-value=4.9 Score=23.00 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=7.3
Q ss_pred CCCeEeCCccccccc
Q 036117 353 QISELGISNNQLSEI 367 (641)
Q Consensus 353 ~L~~L~l~~n~~~~l 367 (641)
+|+.|++++|+|+.+
T Consensus 3 ~L~~L~L~~NkI~~I 17 (26)
T smart00365 3 NLEELDLSQNKIKKI 17 (26)
T ss_pred ccCEEECCCCcccee
Confidence 445555555554443
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.87 E-value=3.3 Score=24.12 Aligned_cols=15 Identities=40% Similarity=0.773 Sum_probs=8.8
Q ss_pred CCCcEEeCCCCcccc
Q 036117 539 PDLQYIDLGDNQLSG 553 (641)
Q Consensus 539 ~~L~~L~Ls~n~~~~ 553 (641)
++|++|||++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 356666666666553
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.16 E-value=5.2 Score=22.84 Aligned_cols=16 Identities=44% Similarity=0.764 Sum_probs=8.4
Q ss_pred CCCEEeCCCCcCcccCC
Q 036117 588 YLQNLDIFDNQLTGKIP 604 (641)
Q Consensus 588 ~L~~L~L~~n~l~~~ip 604 (641)
+|+.|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4555555555554 444
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.49 E-value=9.8 Score=39.97 Aligned_cols=65 Identities=20% Similarity=0.056 Sum_probs=32.2
Q ss_pred CCCCCcEEEeccccCCCCCCc--ccCCCCCCCEEEcCCC--CCCCCch-hhcCCCCCcEEEeeCCcCCCC
Q 036117 158 NLQNAWLLRIGANYLEDPDPV--KFKGMASLTDLWLDYN--LLEKFPS-FIAECSKLMFLDLSDNLIMGH 222 (641)
Q Consensus 158 ~l~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~~--~~~~l~~-~l~~~~~L~~L~l~~~~~~~~ 222 (641)
+.+.+..+++++|++...... .-...|+|+.|+|++| .+..-+. .-.+...|++|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 344455555666655433221 1233466666777666 3322111 112234567777777776643
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=40.44 E-value=34 Score=35.44 Aligned_cols=202 Identities=16% Similarity=0.068 Sum_probs=96.6
Q ss_pred CCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCC-
Q 036117 412 LTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG- 490 (641)
Q Consensus 412 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~- 490 (641)
-+.+++++++.|.+....|-.+.+-.. -+.++.|..+...-. .+....+...+.+++++.|..-..+|.....+
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis---~l~~qsg~~~lteldls~n~~Kddip~~~n~~a 238 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFIS---KLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKA 238 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHH---HhhhhhccccccccccccCCCCccchhHHHHhh
Confidence 456777888888777655543332211 155566665533221 22222222357788888877766666543322
Q ss_pred --CCCceEeccCCcccCC---CccccccCCCCcEEECCCCcCcc----ccC----cccCCCCCCcEEeCCCCcccccCCh
Q 036117 491 --GNLIYLTANVNKLVGP---IPESLWNCTGLTRVRLEQNRLDG----DIT----NALGIYPDLQYIDLGDNQLSGVLTS 557 (641)
Q Consensus 491 --~~L~~L~l~~n~~~~~---~~~~l~~~~~L~~L~l~~n~l~~----~~~----~~~~~l~~L~~L~Ls~n~~~~~~~~ 557 (641)
..++.++.+...+.-. .+.....-++++..+++.|.... +.+ ..++.-+++ .|++..+..-..-+.
T Consensus 239 ~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lk 317 (553)
T KOG4242|consen 239 GTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLK 317 (553)
T ss_pred hhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhh
Confidence 3455666665554321 12223334566666666654421 111 223333445 556665554322111
Q ss_pred hh-h-----cCCCCCEEeCcCCcCccc--CCccccCCCCCCEEeCCCCcCcccCCccc--cCCCCCCEEeCcC
Q 036117 558 NW-G-----KCTNLSNFRISGNRIKGG--IPAELGNLTYLQNLDIFDNQLTGKIPAQL--FRSSFLIRLNLRR 620 (641)
Q Consensus 558 ~~-~-----~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~ip~~l--~~~~~L~~l~l~~ 620 (641)
.+ - .-+.=-++++..|...+. ....+..-. +++|++++|.+.|+..... .+.++.+++++..
T Consensus 318 s~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R-~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 318 SMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQR-VQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred hhhcccccccccccccCChhhccccccchhhcccccee-eeEeeccccccccccccccceeeccccccccccc
Confidence 11 0 001112456666654321 112222223 7777788877776654322 2235555555544
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=36.90 E-value=25 Score=19.81 Aligned_cols=11 Identities=45% Similarity=0.401 Sum_probs=5.9
Q ss_pred CCCCEEECCCC
Q 036117 112 TKLILLDLSSN 122 (641)
Q Consensus 112 ~~L~~L~L~~n 122 (641)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555555
Done!