Query 036117
Match_columns 641
No_of_seqs 464 out of 4181
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 16:15:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.1E-80 7.1E-85 698.1 48.2 601 15-630 5-723 (768)
2 3rgz_A Protein brassinosteroid 100.0 8.3E-70 2.8E-74 611.9 45.7 551 62-626 99-743 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2E-58 6.7E-63 515.1 49.8 547 63-628 25-626 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-56 3.8E-61 500.9 48.5 563 67-640 8-614 (680)
5 3t6q_A CD180 antigen; protein- 100.0 3.7E-56 1.3E-60 490.2 41.7 514 89-628 34-564 (606)
6 3t6q_A CD180 antigen; protein- 100.0 2.3E-54 7.9E-59 475.8 44.8 515 63-604 33-564 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-54 3.8E-59 478.4 36.8 527 67-628 15-562 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-53 7.8E-58 467.9 38.7 518 90-641 13-551 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 5.6E-51 1.9E-55 463.4 41.4 507 87-627 23-563 (844)
10 4eco_A Uncharacterized protein 100.0 1.2E-52 3.9E-57 461.7 22.3 493 20-576 28-600 (636)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-50 4.8E-55 460.2 36.9 511 92-636 8-551 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 1.4E-50 4.7E-55 451.5 33.9 480 19-554 266-842 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 5.2E-49 1.8E-53 430.3 39.0 494 88-628 28-535 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 3.2E-49 1.1E-53 431.9 35.1 490 62-605 27-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 8.5E-48 2.9E-52 418.5 30.8 493 51-604 3-514 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 7.1E-47 2.4E-51 411.2 36.1 489 89-628 6-514 (549)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-45 4.4E-50 398.3 29.3 459 91-604 3-485 (520)
18 4eco_A Uncharacterized protein 100.0 4.7E-47 1.6E-51 417.1 16.9 456 112-625 81-601 (636)
19 4g8a_A TOLL-like receptor 4; l 100.0 6.2E-44 2.1E-48 395.5 40.8 508 88-624 52-580 (635)
20 2z7x_B TOLL-like receptor 1, v 100.0 7.7E-45 2.6E-49 392.2 29.0 452 66-554 3-483 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 1E-42 3.6E-47 385.6 39.4 502 112-641 52-573 (635)
22 4ecn_A Leucine-rich repeat pro 100.0 1.7E-43 5.9E-48 394.4 29.0 421 184-631 323-847 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.3E-41 7.9E-46 368.0 32.1 457 87-604 30-514 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.6E-41 9E-46 367.5 29.7 453 65-554 33-512 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 5.4E-40 1.8E-44 345.1 25.8 423 112-633 11-438 (454)
26 3v47_A TOLL-like receptor 5B a 100.0 3.1E-39 1E-43 342.5 28.6 390 188-604 14-412 (455)
27 3v47_A TOLL-like receptor 5B a 100.0 5.3E-39 1.8E-43 340.7 30.2 381 210-628 13-412 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 3.8E-39 1.3E-43 338.7 23.3 426 86-609 9-438 (454)
29 1ogq_A PGIP-2, polygalacturona 100.0 8E-39 2.7E-43 320.4 18.1 290 18-339 2-302 (313)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.3E-36 4.4E-41 319.7 32.3 415 103-636 33-455 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 9.5E-37 3.2E-41 320.7 28.9 356 149-607 31-394 (457)
32 1o6v_A Internalin A; bacterial 100.0 1.2E-35 4.1E-40 315.1 33.5 343 63-450 46-388 (466)
33 1o6v_A Internalin A; bacterial 100.0 1.6E-35 5.4E-40 314.1 33.5 346 205-601 44-389 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 2.5E-34 8.6E-39 306.4 29.8 320 236-577 15-334 (477)
35 2id5_A Lingo-1, leucine rich r 100.0 2.1E-34 7.2E-39 307.0 28.7 324 258-603 13-336 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 9.3E-33 3.2E-37 286.1 26.8 311 86-428 43-354 (390)
37 4fmz_A Internalin; leucine ric 100.0 3.8E-32 1.3E-36 277.1 29.6 308 83-450 39-346 (347)
38 3oja_B Anopheles plasmodium-re 100.0 2.6E-32 8.8E-37 298.3 27.2 311 86-428 49-360 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 4.1E-32 1.4E-36 281.3 27.3 311 255-602 44-354 (390)
40 4fmz_A Internalin; leucine ric 100.0 1.4E-31 4.7E-36 273.0 30.0 307 252-624 40-346 (347)
41 1ogq_A PGIP-2, polygalacturona 100.0 6.4E-33 2.2E-37 277.5 18.7 248 370-626 55-307 (313)
42 3oja_B Anopheles plasmodium-re 100.0 6.6E-32 2.3E-36 295.0 26.0 312 255-603 50-361 (597)
43 4fcg_A Uncharacterized protein 100.0 6E-32 2E-36 272.0 15.1 277 19-316 24-313 (328)
44 1z7x_W Ribonuclease inhibitor; 100.0 4.5E-34 1.6E-38 303.3 -1.9 390 207-631 3-447 (461)
45 1z7x_W Ribonuclease inhibitor; 100.0 3.9E-34 1.3E-38 303.8 -4.5 383 184-605 3-445 (461)
46 1xku_A Decorin; proteoglycan, 100.0 2.7E-29 9.1E-34 253.9 29.8 269 304-622 52-330 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 1.7E-29 5.7E-34 255.5 26.8 293 89-423 34-330 (332)
48 2ft3_A Biglycan; proteoglycan, 100.0 1.8E-29 6E-34 255.4 26.5 288 281-622 34-331 (332)
49 1xku_A Decorin; proteoglycan, 100.0 5.2E-29 1.8E-33 251.8 29.5 243 89-365 32-276 (330)
50 3ogk_B Coronatine-insensitive 100.0 5.2E-31 1.8E-35 289.0 2.3 354 202-597 159-548 (592)
51 3ogk_B Coronatine-insensitive 100.0 3.6E-31 1.2E-35 290.3 -0.8 379 230-626 110-528 (592)
52 4fcg_A Uncharacterized protein 100.0 4.5E-28 1.6E-32 243.7 19.7 218 382-624 97-314 (328)
53 2z66_A Variable lymphocyte rec 100.0 1.8E-27 6.2E-32 237.8 21.3 244 385-635 48-298 (306)
54 2z66_A Variable lymphocyte rec 100.0 4.2E-27 1.4E-31 235.1 22.6 232 389-627 28-264 (306)
55 2z80_A TOLL-like receptor 2, v 99.9 1E-27 3.5E-32 244.6 14.8 279 303-604 30-318 (353)
56 2z80_A TOLL-like receptor 2, v 99.9 1.9E-27 6.6E-32 242.6 15.8 286 49-406 27-318 (353)
57 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-26 5.9E-31 228.0 20.5 238 389-633 32-270 (285)
58 3zyi_A Leucine-rich repeat-con 99.9 6E-26 2.1E-30 239.5 24.6 228 88-340 75-302 (452)
59 2p1m_B Transport inhibitor res 99.9 8.8E-30 3E-34 279.4 -5.0 421 179-622 61-542 (594)
60 1ozn_A Reticulon 4 receptor; N 99.9 2.2E-26 7.5E-31 227.3 18.6 231 384-621 51-284 (285)
61 3zyj_A Leucine-rich repeat-con 99.9 1.2E-25 4.1E-30 236.4 24.5 244 67-340 47-291 (440)
62 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-27 5.7E-32 238.9 9.8 267 330-629 12-281 (317)
63 3zyi_A Leucine-rich repeat-con 99.9 1.6E-25 5.6E-30 236.1 24.9 248 330-601 56-304 (452)
64 3zyj_A Leucine-rich repeat-con 99.9 2.1E-25 7.1E-30 234.5 24.8 249 329-601 44-293 (440)
65 1wwl_A Monocyte differentiatio 99.9 1.2E-27 4E-32 239.4 6.7 244 372-626 50-311 (312)
66 3g06_A SSPH2 (leucine-rich rep 99.9 9.4E-25 3.2E-29 236.0 27.4 265 281-608 41-305 (622)
67 3o53_A Protein LRIM1, AGAP0063 99.9 2.6E-27 8.8E-32 237.5 6.6 239 324-595 30-270 (317)
68 2o6q_A Variable lymphocyte rec 99.9 7.1E-25 2.4E-29 214.4 22.8 216 49-269 2-218 (270)
69 3oja_A Leucine-rich immune mol 99.9 1.3E-26 4.4E-31 245.8 10.9 228 389-636 34-263 (487)
70 1wwl_A Monocyte differentiatio 99.9 3.3E-27 1.1E-31 236.1 5.8 240 386-641 40-302 (312)
71 2p1m_B Transport inhibitor res 99.9 1.9E-28 6.3E-33 268.9 -5.8 424 155-600 61-544 (594)
72 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-24 7.2E-29 233.3 25.5 281 49-411 19-306 (622)
73 3oja_A Leucine-rich immune mol 99.9 1.9E-25 6.3E-30 236.9 10.7 217 383-619 52-270 (487)
74 2z62_A TOLL-like receptor 4, v 99.9 2.2E-23 7.4E-28 204.8 21.1 209 389-604 28-241 (276)
75 3rfs_A Internalin B, repeat mo 99.9 7E-24 2.4E-28 207.5 16.8 208 387-635 39-246 (272)
76 2z62_A TOLL-like receptor 4, v 99.9 2.3E-23 7.8E-28 204.6 19.0 208 413-627 28-240 (276)
77 2o6q_A Variable lymphocyte rec 99.9 4.1E-22 1.4E-26 194.7 23.0 206 389-603 16-221 (270)
78 3rfs_A Internalin B, repeat mo 99.9 9.7E-23 3.3E-27 199.4 17.5 226 330-611 21-246 (272)
79 1p9a_G Platelet glycoprotein I 99.9 3.1E-22 1E-26 197.3 21.1 204 385-601 6-209 (290)
80 3goz_A Leucine-rich repeat-con 99.9 2.2E-24 7.5E-29 220.5 5.2 263 332-604 2-301 (362)
81 2ca6_A RAN GTPase-activating p 99.9 2.7E-24 9.1E-29 222.1 4.4 251 343-628 23-320 (386)
82 1p9a_G Platelet glycoprotein I 99.9 1.3E-21 4.6E-26 192.6 20.6 205 347-577 5-209 (290)
83 4glp_A Monocyte differentiatio 99.9 4.5E-22 1.5E-26 198.7 17.1 226 389-625 64-308 (310)
84 2ast_B S-phase kinase-associat 99.9 9.2E-24 3.1E-28 214.0 4.6 198 329-549 48-257 (336)
85 3goz_A Leucine-rich repeat-con 99.9 1.5E-23 5.2E-28 214.2 5.8 260 308-581 2-302 (362)
86 2ast_B S-phase kinase-associat 99.9 4.5E-23 1.5E-27 208.9 9.2 234 389-633 70-315 (336)
87 2ca6_A RAN GTPase-activating p 99.9 1.5E-23 5.1E-28 216.5 4.7 242 319-576 23-316 (386)
88 3m19_A Variable lymphocyte rec 99.9 1.9E-21 6.5E-26 187.8 19.1 189 50-245 3-192 (251)
89 3m19_A Variable lymphocyte rec 99.9 7E-21 2.4E-25 183.8 19.4 181 413-602 14-194 (251)
90 2xwt_C Thyrotropin receptor; s 99.9 1.9E-21 6.6E-26 186.3 14.5 197 390-622 32-237 (239)
91 2xwt_C Thyrotropin receptor; s 99.9 6.1E-21 2.1E-25 182.9 16.4 203 343-597 25-236 (239)
92 4glp_A Monocyte differentiatio 99.9 2.2E-21 7.6E-26 193.6 13.1 223 88-316 64-306 (310)
93 1h6u_A Internalin H; cell adhe 99.9 1.1E-20 3.9E-25 188.0 17.5 172 385-576 59-230 (308)
94 1h6u_A Internalin H; cell adhe 99.8 3.5E-20 1.2E-24 184.4 20.4 195 84-294 37-231 (308)
95 2o6s_A Variable lymphocyte rec 99.8 4.8E-20 1.7E-24 172.5 17.4 184 51-257 6-190 (208)
96 2o6s_A Variable lymphocyte rec 99.8 3.8E-20 1.3E-24 173.2 14.6 180 416-611 10-189 (208)
97 3cvr_A Invasion plasmid antige 99.8 6.7E-20 2.3E-24 195.6 16.0 187 390-610 60-253 (571)
98 4ay9_X Follicle-stimulating ho 99.8 1.7E-19 5.7E-24 183.2 15.3 221 88-314 30-256 (350)
99 3cvr_A Invasion plasmid antige 99.8 8.2E-20 2.8E-24 194.9 12.4 196 53-278 49-252 (571)
100 4ay9_X Follicle-stimulating ho 99.8 1.2E-18 4.1E-23 176.9 17.4 241 331-598 12-257 (350)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 2.5E-18 8.4E-23 161.9 16.5 156 440-604 14-170 (220)
102 2v9t_B SLIT homolog 2 protein 99.8 3.8E-18 1.3E-22 160.6 15.9 153 440-601 14-166 (220)
103 1m9s_A Internalin B; cell inva 99.8 3.5E-18 1.2E-22 184.5 17.4 171 387-577 41-211 (605)
104 1h6t_A Internalin B; cell adhe 99.8 2.2E-18 7.4E-23 169.9 13.2 189 391-601 26-214 (291)
105 3e6j_A Variable lymphocyte rec 99.8 1E-17 3.6E-22 158.8 16.9 155 439-603 21-175 (229)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 7.5E-18 2.6E-22 158.6 15.6 152 417-577 15-167 (220)
107 1h6t_A Internalin B; cell adhe 99.8 7.5E-18 2.6E-22 166.0 15.4 172 85-294 43-214 (291)
108 2xot_A Amphoterin-induced prot 99.7 6.6E-18 2.2E-22 172.1 14.4 176 416-600 21-202 (361)
109 2v9t_B SLIT homolog 2 protein 99.7 2.3E-17 8E-22 155.2 15.9 152 416-576 14-165 (220)
110 4ezg_A Putative uncharacterize 99.7 1.5E-17 5.2E-22 153.8 14.1 151 468-625 45-195 (197)
111 1m9s_A Internalin B; cell inva 99.7 1.2E-17 4E-22 180.4 14.6 224 390-635 22-258 (605)
112 3e6j_A Variable lymphocyte rec 99.7 6.8E-17 2.3E-21 153.2 18.0 157 49-245 16-172 (229)
113 1dce_A Protein (RAB geranylger 99.7 5.4E-20 1.9E-24 197.5 -6.3 216 386-641 346-566 (567)
114 1dce_A Protein (RAB geranylger 99.7 3.7E-20 1.3E-24 198.8 -7.8 191 411-641 347-539 (567)
115 2xot_A Amphoterin-induced prot 99.7 4.6E-17 1.6E-21 165.8 14.4 177 392-577 21-203 (361)
116 4ezg_A Putative uncharacterize 99.7 6.7E-17 2.3E-21 149.5 13.2 152 436-601 43-195 (197)
117 4b8c_D Glucose-repressible alc 99.7 2.6E-18 9E-23 190.3 1.1 231 20-266 130-369 (727)
118 1xeu_A Internalin C; cellular 99.7 1.1E-16 3.7E-21 155.1 10.8 171 411-602 17-187 (263)
119 1w8a_A SLIT protein; signaling 99.7 4.5E-16 1.5E-20 143.1 13.8 161 469-634 10-172 (192)
120 1xeu_A Internalin C; cellular 99.7 5.8E-17 2E-21 157.0 7.9 122 89-220 20-141 (263)
121 4b8c_D Glucose-repressible alc 99.7 4.3E-17 1.5E-21 180.6 6.5 183 428-626 215-406 (727)
122 1w8a_A SLIT protein; signaling 99.7 8.7E-16 3E-20 141.1 13.6 170 440-623 11-182 (192)
123 2ell_A Acidic leucine-rich nuc 99.6 7.4E-16 2.5E-20 138.5 11.8 137 491-630 24-165 (168)
124 2ell_A Acidic leucine-rich nuc 99.6 5.3E-16 1.8E-20 139.5 9.7 135 468-605 25-164 (168)
125 2je0_A Acidic leucine-rich nuc 99.6 9.7E-16 3.3E-20 134.7 10.1 127 491-619 17-148 (149)
126 2je0_A Acidic leucine-rich nuc 99.6 6.7E-16 2.3E-20 135.7 7.8 126 514-641 16-146 (149)
127 3sb4_A Hypothetical leucine ri 99.6 1.2E-15 4.2E-20 153.3 9.5 101 255-357 225-326 (329)
128 3sb4_A Hypothetical leucine ri 99.6 1.5E-15 5.2E-20 152.6 9.3 100 538-639 225-325 (329)
129 2o6r_A Variable lymphocyte rec 99.6 1.4E-14 4.9E-19 131.3 14.1 134 468-604 8-141 (177)
130 2wfh_A SLIT homolog 2 protein 99.6 1.7E-14 5.7E-19 132.5 14.3 128 470-601 13-140 (193)
131 2o6r_A Variable lymphocyte rec 99.6 1.8E-14 6.3E-19 130.5 13.8 132 494-628 10-141 (177)
132 2wfh_A SLIT homolog 2 protein 99.6 2.6E-14 9E-19 131.1 13.7 128 494-625 13-140 (193)
133 4fdw_A Leucine rich hypothetic 99.5 4E-13 1.4E-17 137.7 21.8 266 86-365 111-383 (401)
134 1a9n_A U2A', U2A'; complex (nu 99.5 4E-14 1.4E-18 128.1 11.8 134 487-625 15-154 (176)
135 4fdw_A Leucine rich hypothetic 99.5 1.4E-12 4.8E-17 133.7 22.3 270 110-424 111-381 (401)
136 1ds9_A Outer arm dynein; leuci 99.5 1.8E-16 6.1E-21 146.7 -7.8 150 468-624 19-185 (198)
137 4fs7_A Uncharacterized protein 99.5 2.5E-12 8.7E-17 132.4 22.4 333 244-639 59-392 (394)
138 4fs7_A Uncharacterized protein 99.5 1.9E-12 6.4E-17 133.4 21.4 62 105-168 64-125 (394)
139 1a9n_A U2A', U2A'; complex (nu 99.5 6.1E-14 2.1E-18 126.9 8.8 127 510-641 14-146 (176)
140 1ds9_A Outer arm dynein; leuci 99.5 7.2E-16 2.5E-20 142.6 -6.1 153 435-600 16-185 (198)
141 3g39_A Variable lymphocyte rec 99.4 1.7E-12 5.7E-17 116.4 12.2 108 493-603 11-118 (170)
142 3g39_A Variable lymphocyte rec 99.4 2.2E-12 7.5E-17 115.7 12.1 108 468-578 10-117 (170)
143 2r9u_A Variable lymphocyte rec 99.4 4.4E-12 1.5E-16 114.0 12.3 105 494-601 15-119 (174)
144 2r9u_A Variable lymphocyte rec 99.3 8.7E-12 3E-16 112.1 13.4 86 112-197 33-118 (174)
145 3un9_A NLR family member X1; l 99.3 1.4E-13 4.9E-18 139.7 -2.1 189 436-625 71-284 (372)
146 4gt6_A Cell surface protein; l 99.3 1.3E-09 4.5E-14 112.0 27.5 132 485-623 259-390 (394)
147 3un9_A NLR family member X1; l 99.3 2.3E-13 8E-18 138.1 -2.0 184 412-601 71-284 (372)
148 4gt6_A Cell surface protein; l 99.2 1E-09 3.6E-14 112.8 24.2 157 173-336 52-213 (394)
149 2ifg_A High affinity nerve gro 99.1 1.6E-10 5.5E-15 116.8 10.8 103 471-576 12-116 (347)
150 2ifg_A High affinity nerve gro 99.1 2.6E-10 8.9E-15 115.3 11.0 106 494-602 11-118 (347)
151 4h09_A Hypothetical leucine ri 99.0 8.1E-08 2.8E-12 98.1 23.7 62 384-446 281-342 (379)
152 4h09_A Hypothetical leucine ri 98.9 2.7E-07 9.2E-12 94.2 24.3 97 487-586 259-355 (379)
153 2ra8_A Uncharacterized protein 98.9 1.4E-09 4.7E-14 109.3 5.5 60 431-499 166-227 (362)
154 2ra8_A Uncharacterized protein 98.8 1.9E-09 6.5E-14 108.3 4.9 150 468-622 173-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 2.3E-08 7.9E-13 90.5 3.4 115 510-624 31-164 (185)
156 3rw6_A Nuclear RNA export fact 98.5 1.8E-08 6.1E-13 95.8 0.9 66 537-604 168-237 (267)
157 1io0_A Tropomodulin; LRR prote 98.4 4.7E-08 1.6E-12 88.4 1.9 115 486-600 31-164 (185)
158 3rw6_A Nuclear RNA export fact 98.3 1E-07 3.5E-12 90.6 1.6 80 560-641 167-257 (267)
159 3e4g_A ATP synthase subunit S, 98.1 5.6E-07 1.9E-11 79.1 1.4 84 515-598 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.1 8.3E-07 2.8E-11 78.0 2.1 83 492-574 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00012 4.1E-09 65.5 4.6 112 512-623 38-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00019 6.5E-09 64.2 2.8 65 85-149 38-111 (197)
163 3rfe_A Platelet glycoprotein I 96.3 0.0089 3E-07 49.7 7.1 56 519-576 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.0 0.011 3.9E-07 49.1 6.4 57 542-600 11-68 (130)
165 2lz0_A Uncharacterized protein 49.7 25 0.00084 27.0 4.9 14 178-191 37-50 (100)
166 2lz0_A Uncharacterized protein 44.8 27 0.00093 26.7 4.5 40 406-446 13-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-80 Score=698.08 Aligned_cols=601 Identities=31% Similarity=0.483 Sum_probs=514.9
Q ss_pred HhhcCcHHHHHHHHHHHhcCCCCC-CCCCCCCCCCCCCccccceeeCCCCCEEEEEcCCCCCccc---cCC---------
Q 036117 15 VVQISAQKEAKALLNWKSSLVSSS-LPSWTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGT---LDG--------- 81 (641)
Q Consensus 15 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~W~~~~~~~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~---~~~--------- 81 (641)
+.+++.++|+.||++||+++.++. +++|... +|||.|.||.|+ .++|++|+|+++++.|. ++.
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~~l~~W~~~---~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKNLLPDWSSN---KNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTTSSTTCCTT---SCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred ccccCCHHHHHHHHHHHhhCCCcccccCCCCC---CCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 444567889999999999997554 8899754 689999999998 78999999999999886 431
Q ss_pred -------------cCCCCCCCCCEEECCCCCCCccCch--hccCCCCCCEEECCCCcCCCCCcccc-CCCCCCCEEEccc
Q 036117 82 -------------FDFSAFPNLTALNLNMNNLVGSIPA--GIGNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVLLLYN 145 (641)
Q Consensus 82 -------------~~~~~l~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~l~~ 145 (641)
..++.+++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|++|++++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 3577788888888888888877777 78888888888888888887777665 7788888888888
Q ss_pred ccCCCCCChh---ccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCC
Q 036117 146 NSLTGQIPHQ---LSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGH 222 (641)
Q Consensus 146 n~~~~~~~~~---l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~ 222 (641)
|.+++..|.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+...+..+.++++|++|++++|.+.+.
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc
Confidence 8888777766 7788888888888888776544 3778889999999888855433488888999999999888866
Q ss_pred CChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCC-CcccEeeeecccccccCccccC
Q 036117 223 IPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLL-SNLEILEFHENLFHGLIPSSLG 301 (641)
Q Consensus 223 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~l~ 301 (641)
++. .+..+++|++|++++|.+.+.+|.. .+++|++|++++|.+.+.+|..+... ++|++|++++|.+.+.+|..+.
T Consensus 239 ~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 239 FSR-AISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp HHH-HTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred ccH-HHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh
Confidence 554 4588889999999999888777664 78889999999998888888877664 8899999999999888888899
Q ss_pred CCCCCCeeeccCccCCCCCCcC-CCCCCCCCEEEccCccccccCchhhhcCC-CCCeEeCCccccc-------------c
Q 036117 302 NLRRLQRLNLKSAGLNSSIPKE-LGFCANLTFLELSINNLTGSLPLSLASLR-QISELGISNNQLS-------------E 366 (641)
Q Consensus 302 ~l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~l~~~~~~~l~~~~-~L~~L~l~~n~~~-------------~ 366 (641)
.+++|++|++++|.+.+.+|.. +..+++|++|++++|++++.+|..+..++ +|+.|++++|.+. .
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC
Confidence 9999999999999888777765 78889999999999999888888888887 8999999988753 5
Q ss_pred cceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccC
Q 036117 367 IISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSS 446 (641)
Q Consensus 367 l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~ 446 (641)
++.+++++|.+.+.+|..++.+++|++|++++|++++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 88899999999999999999999999999999999988999999999999999999999988999999999999999999
Q ss_pred CcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCc
Q 036117 447 NQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNR 526 (641)
Q Consensus 447 n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 526 (641)
|.+++.+|..+..++ +|++|++++|++++.+|.++..+++|++|++++|++.+.+|..+.++++|++|++++|+
T Consensus 476 N~l~~~~p~~l~~l~------~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCT------NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp SCCCSCCCGGGGGCT------TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CcccCcCCHHHhcCC------CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 999999999888888 89999999999999999999999999999999999999999999999999999999998
Q ss_pred CccccCcc----------------------------------------------------------------------cC
Q 036117 527 LDGDITNA----------------------------------------------------------------------LG 536 (641)
Q Consensus 527 l~~~~~~~----------------------------------------------------------------------~~ 536 (641)
+.|.+|.. ++
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 88766643 33
Q ss_pred CCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEE
Q 036117 537 IYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRL 616 (641)
Q Consensus 537 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l 616 (641)
.+++|+.||+++|+++|.+|..+++++.|+.|+|++|+++|.+|..++++++|++|||++|+++|.+|..+..+++|++|
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCCcccCccc
Q 036117 617 NLRRNQLSDKIPAE 630 (641)
Q Consensus 617 ~l~~n~l~~~~p~~ 630 (641)
++++|+++|.||..
T Consensus 710 ~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 710 DLSNNNLSGPIPEM 723 (768)
T ss_dssp ECCSSEEEEECCSS
T ss_pred ECcCCcccccCCCc
Confidence 99999999999964
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.3e-70 Score=611.86 Aligned_cols=551 Identities=31% Similarity=0.457 Sum_probs=493.7
Q ss_pred CCCEEEEEcCCCCCccccCCc--CCCCCCCCCEEECCCCCCCccCchhc-cCCCCCCEEECCCCcCCCCCccc---cCCC
Q 036117 62 VGSISEINLANSGLDGTLDGF--DFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPE---IGYL 135 (641)
Q Consensus 62 ~~~v~~l~l~~~~~~~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~~---l~~l 135 (641)
..++++|+|++|.+.|.++ . .++++++|++|++++|.+.+..|..+ .++++|++|++++|.+++..|.. ++++
T Consensus 99 l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177 (768)
T ss_dssp CTTCCEEECCSSEEEEEGG-GGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred CCCCCEEECCCCcCCCcCC-ChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence 3678999999999998887 5 78999999999999999988877765 78999999999999999888877 7899
Q ss_pred CCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCC-CCchhhcCCCCCcEEEe
Q 036117 136 SDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE-KFPSFIAECSKLMFLDL 214 (641)
Q Consensus 136 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l 214 (641)
++|++|++++|.+++..+. .++++|++|++++|.+.+..+. +..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp TTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred CCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 9999999999999876654 7899999999999999887776 999999999999999994 67888999999999999
Q ss_pred eCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCC-CCCCEEEcCCCcCCccCCcccCCCCcccEeeeeccccc
Q 036117 215 SDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTF-PKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFH 293 (641)
Q Consensus 215 ~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~ 293 (641)
++|.+.+.++.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+.+.+|..++.+++|++|++++|.+.
T Consensus 255 s~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 255 SSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331 (768)
T ss_dssp CSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCccc
Confidence 999998777653 78999999999999998889888765 99999999999999999999999999999999999998
Q ss_pred ccCccc-cCCCCCCCeeeccCccCCCCCCcCCCCCC-CCCEEEccCccccccCchhhhc--CCCCCeEeCCccccc----
Q 036117 294 GLIPSS-LGNLRRLQRLNLKSAGLNSSIPKELGFCA-NLTFLELSINNLTGSLPLSLAS--LRQISELGISNNQLS---- 365 (641)
Q Consensus 294 ~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~n~l~~~~~~~l~~--~~~L~~L~l~~n~~~---- 365 (641)
+.+|.. +..+++|++|++++|.+.+.+|..+..++ +|++|++++|++++.+|..+.. +++|++|++++|.++
T Consensus 332 ~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 411 (768)
T 3rgz_A 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411 (768)
T ss_dssp EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC
T ss_pred CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC
Confidence 777765 88999999999999999888888888877 9999999999999988888776 789999999999765
Q ss_pred -------ccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCC
Q 036117 366 -------EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSS 438 (641)
Q Consensus 366 -------~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 438 (641)
.++.+++++|.+.+.+|..++.+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++
T Consensus 412 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 491 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCC
Confidence 6788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCcccc-------
Q 036117 439 LVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESL------- 511 (641)
Q Consensus 439 L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l------- 511 (641)
|++|++++|.+++.+|.+++.++ +|++|++++|++++.+|..+..+++|+.|++++|++.|.+|..+
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l~------~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~ 565 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRLE------NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCT------TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred CCEEEccCCccCCcCChHHhcCC------CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence 99999999999999999999888 89999999999999999999999999999999999988777543
Q ss_pred ---------------------------------------------------------------ccCCCCcEEECCCCcCc
Q 036117 512 ---------------------------------------------------------------WNCTGLTRVRLEQNRLD 528 (641)
Q Consensus 512 ---------------------------------------------------------------~~~~~L~~L~l~~n~l~ 528 (641)
..+++|+.|++++|+++
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~ 645 (768)
T 3rgz_A 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645 (768)
T ss_dssp CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence 23467899999999999
Q ss_pred cccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCcccc
Q 036117 529 GDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLF 608 (641)
Q Consensus 529 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~ 608 (641)
|.+|..++.++.|+.|+|++|+++|.+|..++++++|++|+|++|+++|.+|..++++++|++|+|++|+++|.||.. .
T Consensus 646 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~ 724 (768)
T 3rgz_A 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-G 724 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-S
T ss_pred ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-h
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999964 4
Q ss_pred CCCCCCEEeCcCCC-Cccc
Q 036117 609 RSSFLIRLNLRRNQ-LSDK 626 (641)
Q Consensus 609 ~~~~L~~l~l~~n~-l~~~ 626 (641)
.+.++....+.+|+ ++|.
T Consensus 725 ~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 725 QFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp SGGGSCGGGGCSCTEEEST
T ss_pred hhccCCHHHhcCCchhcCC
Confidence 45556666777775 6663
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2e-58 Score=515.12 Aligned_cols=547 Identities=20% Similarity=0.196 Sum_probs=427.7
Q ss_pred CCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEE
Q 036117 63 GSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLL 142 (641)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 142 (641)
.++++|+++++.+.+..+ ..|.++++|++|++++|.+.+..|..++++++|++|++++|.+++..+..|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCG-GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCH-HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 589999999999986544 6799999999999999999988899999999999999999999965555799999999999
Q ss_pred cccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchh-h--cCCCCCcEEEeeCCcC
Q 036117 143 LYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSF-I--AECSKLMFLDLSDNLI 219 (641)
Q Consensus 143 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-l--~~~~~L~~L~l~~~~~ 219 (641)
+++|.+++..|..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+..++.. + ..+++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 999999988788999999999999999999999899999999999999999999777643 3 3568999999999998
Q ss_pred CCCCChhhhcCC---------------------------CCCcEEeccCCcccccCCcccCCCCC--CCEEEcCCCcCCc
Q 036117 220 MGHIPIEQLTHL---------------------------ENLEYLNLTKNSFEGEIPREIKTFPK--LRHLKLGQNKLTG 270 (641)
Q Consensus 220 ~~~~~~~~l~~l---------------------------~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~L~~~~l~~ 270 (641)
.+..+ ..+..+ ++|++|++++|.+.+..+..+..++. |++|++++|.+.+
T Consensus 184 ~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 184 KEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCBCT-TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred cccCh-hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 85443 333444 45566666666666666666655543 7777777777666
Q ss_pred cCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCC-----CCCc----CCCCCCCCCEEEccCcccc
Q 036117 271 TIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNS-----SIPK----ELGFCANLTFLELSINNLT 341 (641)
Q Consensus 271 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~----~l~~~~~L~~L~l~~n~l~ 341 (641)
..+..++.+++|++|++++|.+.+..+..+..+++|++|+++++...+ .+|. .+..+++|++|++++|++.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 666666667777777777777666666666667777777776654332 1221 4556667777777777777
Q ss_pred ccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCC--CCCCCCEEEccCCcCcCCchhhhhCCCCCCeEe
Q 036117 342 GSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIG--LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQ 419 (641)
Q Consensus 342 ~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 419 (641)
+..+..+..+++|++|++++|.+.-. .+ -...+. ..++|+.|++++|++++..|.++..+++|+.|+
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~--------~l---~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 411 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSFTSLR--------TL---TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCBSCCC--------EE---CTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCChhHhccccCCcEEECCCCchhhh--------hc---chhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEe
Confidence 66666666677777777666643210 00 001111 135789999999999888888888899999999
Q ss_pred cccCcCCccCc-ccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCccc--ccCCccccCCCCCceE
Q 036117 420 LANNFFNGSIP-STIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFS--GKLPPGICRGGNLIYL 496 (641)
Q Consensus 420 l~~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~--~~~~~~~~~~~~L~~L 496 (641)
+++|.+.+.++ ..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+. +.+|..+..+++|+.|
T Consensus 412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~------~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP------SLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCT------TCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCc------ccccchhccccccccccCCcccccCCCCCEE
Confidence 99999887665 6788899999999999998877777777666 8999999999876 4678888889999999
Q ss_pred eccCCcccCCCccccccCCCCcEEECCCCcCccccC--------cccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEE
Q 036117 497 TANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDIT--------NALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNF 568 (641)
Q Consensus 497 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L 568 (641)
++++|++.+..+..+.++++|++|++++|++.+..+ ..++.+++|++|++++|+++...+..+.++++|++|
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 565 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence 999999987777788899999999999998876422 236788999999999999986666678899999999
Q ss_pred eCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCcccc-CCCCCCEEeCcCCCCcccCc
Q 036117 569 RISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLF-RSSFLIRLNLRRNQLSDKIP 628 (641)
Q Consensus 569 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~-~~~~L~~l~l~~n~l~~~~p 628 (641)
++++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+.+++++|++....+
T Consensus 566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 9999999876667788899999999999999876666565 67889999999999876554
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-56 Score=500.92 Aligned_cols=563 Identities=21% Similarity=0.185 Sum_probs=469.2
Q ss_pred EEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccc
Q 036117 67 EINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN 146 (641)
Q Consensus 67 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n 146 (641)
.++.++++++ .+| ..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..|..|+++++|++|++++|
T Consensus 8 ~~~cs~~~L~-~ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 8 VADCSHLKLT-QVP-DDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp EEECCSSCCS-SCC-SCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred eeECCCCCcc-ccc-cccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 3555555554 345 3343 79999999999999887888999999999999999999988999999999999999999
Q ss_pred cCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCC-chhhcCCCCCcEEEeeCCcCCCCCCh
Q 036117 147 SLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKF-PSFIAECSKLMFLDLSDNLIMGHIPI 225 (641)
Q Consensus 147 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~ 225 (641)
.+++..+..|.++++|++|++++|.+.++.+..|.++++|++|++++|.+... +..+.++++|++|++++|.+.+. +.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~ 162 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL-KS 162 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB-CH
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc-CH
Confidence 99976666899999999999999999999989999999999999999999554 56788999999999999999854 43
Q ss_pred hhhc--CCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccC---CCCcccEeeeecccccccCcccc
Q 036117 226 EQLT--HLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIG---LLSNLEILEFHENLFHGLIPSSL 300 (641)
Q Consensus 226 ~~l~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~---~~~~L~~L~l~~n~~~~~~~~~l 300 (641)
..+. .+++|++|++++|.+++..+..+..+++|+.+++.++.+.+.....+. ..++|++|++++|.+.+..+..+
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence 3333 568999999999999988888888888888888888776532221111 24678888888888887777777
Q ss_pred CCCCC--CCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCccc---------------
Q 036117 301 GNLRR--LQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQ--------------- 363 (641)
Q Consensus 301 ~~l~~--L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~--------------- 363 (641)
..++. |++|++++|.+.+..+..+..+++|++|++++|++.+..|..+..+++|+.|++++|.
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence 76654 8888888888877777778888888888888888887777788888888888887642
Q ss_pred -----ccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCC--chhhhhC--CCCCCeEecccCcCCccCccccc
Q 036117 364 -----LSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGP--IPQQIGN--LTNLFDLQLANNFFNGSIPSTIG 434 (641)
Q Consensus 364 -----~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~--~~~~~~~--l~~L~~L~l~~n~l~~~~~~~l~ 434 (641)
+..++++++++|.+.+..+..+..+++|++|++++|.+... ....|.. .++|+.|++++|.+.+..+..+.
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 24677788888888888888899999999999999975432 2223333 36899999999999988888999
Q ss_pred CCCCCCEEEccCCcCcccCC-cchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCccc--CCCcccc
Q 036117 435 NLSSLVKLSLSSNQLTGTLP-PEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLV--GPIPESL 511 (641)
Q Consensus 435 ~l~~L~~L~ls~n~l~~~~~-~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~l 511 (641)
.+++|++|++++|.+.+.+| ..+..+. +|++|++++|++.+..+..+..++.|+.|++++|.+. +.+|..+
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLE------NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCT------TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcc------cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence 99999999999999988776 5666776 8999999999999888888999999999999999986 5788899
Q ss_pred ccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCC--------hhhhcCCCCCEEeCcCCcCcccCCccc
Q 036117 512 WNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLT--------SNWGKCTNLSNFRISGNRIKGGIPAEL 583 (641)
Q Consensus 512 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~p~~l 583 (641)
.++++|+.|++++|++.+..+..++.+++|++|++++|++++..+ ..+.++++|++|++++|+++...+..|
T Consensus 477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~ 556 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc
Confidence 999999999999999998888889999999999999999986532 237889999999999999995444569
Q ss_pred cCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCccccc-CCCCCcCC
Q 036117 584 GNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIG-KLSRLQYL 640 (641)
Q Consensus 584 ~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p~~~~-~l~~L~~l 640 (641)
+++++|++|++++|++++..+..+..+++|+.|++++|++++..|..++ .+++|+.|
T Consensus 557 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l 614 (680)
T 1ziw_A 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEE
T ss_pred ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEE
Confidence 9999999999999999954444567899999999999999998888776 56777655
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.7e-56 Score=490.17 Aligned_cols=514 Identities=20% Similarity=0.201 Sum_probs=327.2
Q ss_pred CCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEec
Q 036117 89 NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIG 168 (641)
Q Consensus 89 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 168 (641)
++++|++++|.+++..|..|..+++|++|++++|.+.+..|.+|+++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 57777777777776667777777777777777777776667777777777777777777777777777777777777777
Q ss_pred cccCCCCCCcccCCCCCCCEEEcCCCCCCCCc-hhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCc--EEeccCCccc
Q 036117 169 ANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP-SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLE--YLNLTKNSFE 245 (641)
Q Consensus 169 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~--~L~l~~n~~~ 245 (641)
+|.+++..+..+.++++|++|++++|.+..++ ..+..+++|++|++++|.+. .++...+..+++|+ .|++++|.+.
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccC
Confidence 77777766667777777777777777776542 23334777777777777776 44445557777777 7777777777
Q ss_pred ccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeeccccc-----ccCccccCCCC--CCCeeeccCccCCC
Q 036117 246 GEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFH-----GLIPSSLGNLR--RLQRLNLKSAGLNS 318 (641)
Q Consensus 246 ~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~-----~~~~~~l~~l~--~L~~L~l~~~~~~~ 318 (641)
+..+..+.. .+|++|++++|.. .+..+..+.+++...+....+. ...+..+..+. +|+.+++++|.+.+
T Consensus 193 ~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 193 GIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp EECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred ccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 655555443 5677777777642 1222222222222222111111 11111222221 46666666666665
Q ss_pred CCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccC
Q 036117 319 SIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFD 398 (641)
Q Consensus 319 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~ 398 (641)
..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+.. ..|..+..+++|++|++++
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-------------LCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSB-------------GGGGCGGGCTTCSEEECCS
T ss_pred cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCc-------------CchhhhhccCcCCEEECCC
Confidence 55555666666666666666666 555556666666666655544332 2234455566666666666
Q ss_pred CcCcCCchh-hhhCCCCCCeEecccCcCCccC--cccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEcc
Q 036117 399 NKFSGPIPQ-QIGNLTNLFDLQLANNFFNGSI--PSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFS 475 (641)
Q Consensus 399 n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls 475 (641)
|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..++ +|++|+++
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~ 408 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP------QLELLDLA 408 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT------TCSEEECT
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc------cCCeEECC
Confidence 666544433 3566666666666666666443 45566666666666666666666565555555 66666666
Q ss_pred CCcccccCCcc-ccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccc---cCcccCCCCCCcEEeCCCCcc
Q 036117 476 YNNFSGKLPPG-ICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGD---ITNALGIYPDLQYIDLGDNQL 551 (641)
Q Consensus 476 ~n~l~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~~ 551 (641)
+|++++..+.. +..+++|+.|++++|.+.+..|..+..+++|++|++++|++.+. .+..++.+++|++|++++|++
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence 66666554433 56666777777777777666666666677777777777766652 224566667777777777777
Q ss_pred cccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCc
Q 036117 552 SGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIP 628 (641)
Q Consensus 552 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p 628 (641)
++..|..++.+++|++|++++|++++..|..+.++++| +|++++|++++..|..+..+++|+.+++++|++.+..+
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 76666667777777777777777776666777777777 77777777776556666666777777777777665443
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.3e-54 Score=475.81 Aligned_cols=515 Identities=18% Similarity=0.137 Sum_probs=443.8
Q ss_pred CCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEE
Q 036117 63 GSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLL 142 (641)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 142 (641)
..+++|+++++.+.+..+ ..|+++++|++|++++|.+.+..|.+|..+++|++|++++|.+++..|..|+++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCCh-hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 478999999999997656 7899999999999999999988899999999999999999999988899999999999999
Q ss_pred cccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCC-chhhcCCCCCc--EEEeeCCcC
Q 036117 143 LYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKF-PSFIAECSKLM--FLDLSDNLI 219 (641)
Q Consensus 143 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-~~~l~~~~~L~--~L~l~~~~~ 219 (641)
+++|.+++..+..+.++++|++|++++|.+.+.....+.++++|++|++++|.+..+ +..+..+++|+ .|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999999987788899999999999999999987766677799999999999999776 56799999999 999999999
Q ss_pred CCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCc-----cCCcccCCCC--cccEeeeecccc
Q 036117 220 MGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTG-----TIPDEIGLLS--NLEILEFHENLF 292 (641)
Q Consensus 220 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~-----~~~~~l~~~~--~L~~L~l~~n~~ 292 (641)
.+..+ .. .....|++|++++|.. .+..+..+.+++...+....+.+ ..+..+..+. +++.|++++|.+
T Consensus 192 ~~~~~-~~-~~~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 192 AGIEP-GA-FDSAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp CEECT-TT-TTTCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CccCh-hH-hhhccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 85444 44 3446899999999862 33344444443333332222211 1122233332 799999999999
Q ss_pred cccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeec
Q 036117 293 HGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQL 372 (641)
Q Consensus 293 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l 372 (641)
.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~-------- 337 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK-------- 337 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS--------
T ss_pred CccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc--------
Confidence 9888888999999999999999986 6777889999999999999999988888999999999999666654
Q ss_pred ccccccccCCc-CCCCCCCCCEEEccCCcCcCCc--hhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcC
Q 036117 373 QMNDLSGKLPP-EIGLLPKLEYLYLFDNKFSGPI--PQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQL 449 (641)
Q Consensus 373 ~~~~l~~~~~~-~l~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l 449 (641)
.+.++. .+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 338 -----~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 338 -----RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp -----CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred -----ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 334443 4788999999999999998766 77889999999999999999988888999999999999999999
Q ss_pred cccCCcc-hhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCC---CccccccCCCCcEEECCCC
Q 036117 450 TGTLPPE-IGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGP---IPESLWNCTGLTRVRLEQN 525 (641)
Q Consensus 450 ~~~~~~~-~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~l~~~~~L~~L~l~~n 525 (641)
.+..+.. +..++ +|++|++++|.+++..|..+..+++|+.|++++|++.+. .+..+..+++|++|++++|
T Consensus 413 ~~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 413 KVKDAQSPFQNLH------LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp ECCTTCCTTTTCT------TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CCcccchhhhCcc------cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 8776544 66666 899999999999988898999999999999999999862 3356899999999999999
Q ss_pred cCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCC
Q 036117 526 RLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIP 604 (641)
Q Consensus 526 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip 604 (641)
++.+..|..++.+++|++|++++|++++..|..+.+++.| +|++++|++++..|..++.+++|++|++++|++.+..+
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999999999999999999999999999999999999999 99999999998888889999999999999999987655
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-54 Score=478.37 Aligned_cols=527 Identities=20% Similarity=0.196 Sum_probs=369.2
Q ss_pred EEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccc
Q 036117 67 EINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN 146 (641)
Q Consensus 67 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n 146 (641)
.++.++++++ .+| ..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..|.+|+++++|++|++++|
T Consensus 15 ~~~c~~~~l~-~ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 15 TYQCMDQKLS-KVP-DDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp EEECTTSCCS-SCC-TTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEccCCCcc-cCC-CCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 3455555554 334 2232 67888888888888777777888888888888888888777777888888888888888
Q ss_pred cCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCC--CCchhhcCCCCCcEEEeeCCcCCCCCC
Q 036117 147 SLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE--KFPSFIAECSKLMFLDLSDNLIMGHIP 224 (641)
Q Consensus 147 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~--~l~~~l~~~~~L~~L~l~~~~~~~~~~ 224 (641)
.+++..|..|+++++|++|++++|.+.+..+..+.++++|++|++++|.+. .+|..+.++++|++|++++|.+.+..+
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 888777888888888888888888888777777888888888888888875 467788888888888888888774333
Q ss_pred hhhhcCCCC----CcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCC-ccCCcccCCCCcccEeeeeccccccc----
Q 036117 225 IEQLTHLEN----LEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT-GTIPDEIGLLSNLEILEFHENLFHGL---- 295 (641)
Q Consensus 225 ~~~l~~l~~----L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~l~~n~~~~~---- 295 (641)
..+..+++ ++++++++|.+++..+..+... +|++|++++|.+. +..|..+..++.++.+++..+.+.+.
T Consensus 171 -~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 171 -NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp -TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred -hhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 32344433 4478888888875544444443 7888888888775 34555667777777777655443221
Q ss_pred --CccccCCCC--CCCeeec-cCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCccccccccee
Q 036117 296 --IPSSLGNLR--RLQRLNL-KSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISL 370 (641)
Q Consensus 296 --~~~~l~~l~--~L~~L~l-~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l 370 (641)
.+..+..+. .++.+++ ..+.+.+..+. +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+.
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~----- 320 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK----- 320 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-----
T ss_pred ccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCc-----
Confidence 111122222 2445555 44555555554 667777777777777775 344 5666677777775555432
Q ss_pred ecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCcc--CcccccCCCCCCEEEccCCc
Q 036117 371 QLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGS--IPSTIGNLSSLVKLSLSSNQ 448 (641)
Q Consensus 371 ~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~ls~n~ 448 (641)
.+| .+ .+++|++|++++|+..+.. .+..+++|++|++++|.+.+. ++..+..+++|++|++++|.
T Consensus 321 ---------~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 387 (606)
T 3vq2_A 321 ---------QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387 (606)
T ss_dssp ---------SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS
T ss_pred ---------ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc
Confidence 344 33 6777777777777544333 456777777777777777654 36667777777777777777
Q ss_pred CcccCCcchhcCCCCCCCCCccEEEccCCcccccCC-ccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcC
Q 036117 449 LTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLP-PGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRL 527 (641)
Q Consensus 449 l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 527 (641)
+.+ +|..+..+. +|++|++++|++.+..| ..+..+++|+.|++++|++.+..|..+.++++|++|++++|++
T Consensus 388 l~~-~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 460 (606)
T 3vq2_A 388 AII-MSANFMGLE------ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460 (606)
T ss_dssp EEE-ECCCCTTCT------TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred ccc-chhhccCCC------CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence 663 445555555 77777777777776665 5677777788888888877777777777778888888888877
Q ss_pred cc-ccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCcc
Q 036117 528 DG-DITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQ 606 (641)
Q Consensus 528 ~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~ 606 (641)
.+ ..|..++.+++|++|++++|++++..|..+.++++|++|++++|++++..|..++++++|++|+|++|+++ .+|..
T Consensus 461 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI 539 (606)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC
T ss_pred CCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh
Confidence 76 36777777788888888888877777777777888888888888887777777778888888888888877 67776
Q ss_pred ccCCC-CCCEEeCcCCCCcccCc
Q 036117 607 LFRSS-FLIRLNLRRNQLSDKIP 628 (641)
Q Consensus 607 l~~~~-~L~~l~l~~n~l~~~~p 628 (641)
+..++ +|+.+++++|++.+..+
T Consensus 540 ~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 540 LQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp GGGSCTTCCEEECCSCCCCCSST
T ss_pred HhhhcccCcEEEccCCCcccCCc
Confidence 77775 58888888887765444
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-53 Score=467.91 Aligned_cols=518 Identities=18% Similarity=0.166 Sum_probs=445.9
Q ss_pred CCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEecc
Q 036117 90 LTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGA 169 (641)
Q Consensus 90 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 169 (641)
-++++.+++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 457899999888 5676554 7899999999999988888999999999999999999988899999999999999999
Q ss_pred ccCCCCCCcccCCCCCCCEEEcCCCCCCCCc-hhhcCCCCCcEEEeeCCcCCC-CCChhhhcCCCCCcEEeccCCccccc
Q 036117 170 NYLEDPDPVKFKGMASLTDLWLDYNLLEKFP-SFIAECSKLMFLDLSDNLIMG-HIPIEQLTHLENLEYLNLTKNSFEGE 247 (641)
Q Consensus 170 n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~ 247 (641)
|.+.+..+..|.++++|++|++++|.+..++ ..++++++|++|++++|.+.+ .+|. .+.++++|++|++++|.+++.
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCEE
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCCcceec
Confidence 9999999999999999999999999997776 679999999999999999985 4554 459999999999999999988
Q ss_pred CCcccCCCCCCC----EEEcCCCcCCccCCcccCCCCcccEeeeeccccc-ccCccccCCCCCCCeeeccCccCCCC---
Q 036117 248 IPREIKTFPKLR----HLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFH-GLIPSSLGNLRRLQRLNLKSAGLNSS--- 319 (641)
Q Consensus 248 ~~~~l~~l~~L~----~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~--- 319 (641)
.+..++.+++|+ +|++++|.+.+..+..+.. .+|++|++++|.+. +..+..+..++.++.+++..+.+...
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred ChhhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence 787777666554 8999999998655555544 49999999999886 45677888999999888865544221
Q ss_pred ---CCcCCCCCC--CCCEEEc-cCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCE
Q 036117 320 ---IPKELGFCA--NLTFLEL-SINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEY 393 (641)
Q Consensus 320 ---~~~~l~~~~--~L~~L~l-~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~ 393 (641)
.+..+..+. .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+..+ | .+..+++|++
T Consensus 248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l--------------~-~l~~~~~L~~ 311 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL--------------E-DVPKHFKWQS 311 (606)
T ss_dssp SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC--------------C-CCCTTCCCSE
T ss_pred cccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhh--------------h-hccccccCCE
Confidence 111122222 4666777 66778877776 88899999999888776543 3 6777899999
Q ss_pred EEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCccc--CCcchhcCCCCCCCCCccE
Q 036117 394 LYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGT--LPPEIGNSKSDFGPRFLRN 471 (641)
Q Consensus 394 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~--~~~~~~~~~~~~~~~~L~~ 471 (641)
|++++|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|.+++. +|..+..++ +|++
T Consensus 312 L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~------~L~~ 380 (606)
T 3vq2_A 312 LSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTN------SLRH 380 (606)
T ss_dssp EEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCS------CCCE
T ss_pred EEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCC------cccE
Confidence 99999999 5777 45 8999999999999766544 577899999999999999866 477888877 8999
Q ss_pred EEccCCcccccCCccccCCCCCceEeccCCcccCCCc-cccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCc
Q 036117 472 VSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIP-ESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ 550 (641)
Q Consensus 472 L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 550 (641)
|++++|.+++ +|..+..+++|+.|++++|++.+..| ..+.++++|++|++++|.+.+..|..++.+++|++|++++|+
T Consensus 381 L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 381 LDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp EECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred eECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 9999999884 66889999999999999999998877 689999999999999999999999999999999999999999
Q ss_pred ccc-cCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCcc
Q 036117 551 LSG-VLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPA 629 (641)
Q Consensus 551 ~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p~ 629 (641)
+++ .+|..++.+++|++|++++|++++..|..++++++|++|++++|++++.+|..+..+++|++|++++|+++ .+|.
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG 538 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence 998 47889999999999999999999999999999999999999999999888999999999999999999998 7888
Q ss_pred cccCCC-CCcCCC
Q 036117 630 EIGKLS-RLQYLD 641 (641)
Q Consensus 630 ~~~~l~-~L~~l~ 641 (641)
.+..++ +|+.||
T Consensus 539 ~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 539 ILQHFPKSLAFFN 551 (606)
T ss_dssp CGGGSCTTCCEEE
T ss_pred hHhhhcccCcEEE
Confidence 888886 587664
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-51 Score=463.43 Aligned_cols=507 Identities=22% Similarity=0.209 Sum_probs=374.6
Q ss_pred CCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCC-ccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEE
Q 036117 87 FPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPI-PPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLL 165 (641)
Q Consensus 87 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 165 (641)
.+++++|+|++|.+++..+..|.++++|++|++++|...+.+ |.+|+++++|++|++++|.+.+..|..|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 456777777777777666667777777777777777554444 5667777777777777777776667777777777777
Q ss_pred EeccccCCCCCCc--ccCCCCCCCEEEcCCCCCCCC--chhhcCCCCCcEEEeeCCcCCCCCChhhhcCC--CCCcEEec
Q 036117 166 RIGANYLEDPDPV--KFKGMASLTDLWLDYNLLEKF--PSFIAECSKLMFLDLSDNLIMGHIPIEQLTHL--ENLEYLNL 239 (641)
Q Consensus 166 ~l~~n~~~~~~~~--~l~~l~~L~~L~l~~~~~~~l--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l--~~L~~L~l 239 (641)
++++|.+.+..+. .+.++++|++|++++|.+..+ +..+.++++|++|++++|.+.+..+.. +..+ ++|+.|++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSL 181 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEE
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEEC
Confidence 7777777664433 367777777777777777544 245777777777777777776544433 3444 67777777
Q ss_pred cCCcccccCCcccCCCCC------CCEEEcCCCcCCccCCcccCC---CCcccEeeeecc---------cccccCccccC
Q 036117 240 TKNSFEGEIPREIKTFPK------LRHLKLGQNKLTGTIPDEIGL---LSNLEILEFHEN---------LFHGLIPSSLG 301 (641)
Q Consensus 240 ~~n~~~~~~~~~l~~l~~------L~~L~L~~~~l~~~~~~~l~~---~~~L~~L~l~~n---------~~~~~~~~~l~ 301 (641)
++|.+.+..+..+..+++ |++|++++|.+.+..+..+.. ...++.+.+..+ .+.+.....+.
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 777777666666655554 778888887777666655443 245666666532 22222233344
Q ss_pred CC--CCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccc
Q 036117 302 NL--RRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSG 379 (641)
Q Consensus 302 ~l--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~ 379 (641)
.+ ++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+..+++|++|++++|.+ .+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l-------------~~ 328 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-------------GE 328 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC-------------SC
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC-------------Cc
Confidence 43 6789999999988888888888889999999999999888888888888888888555544 44
Q ss_pred cCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhc
Q 036117 380 KLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGN 459 (641)
Q Consensus 380 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~ 459 (641)
..|..+..+++|++|++++|++.+..+..|..+++|+.|++++|.+++ + ..+++|+.+++++|.++ .+|..
T Consensus 329 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~~N~l~-~l~~~--- 399 (844)
T 3j0a_A 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLSGNKLV-TLPKI--- 399 (844)
T ss_dssp CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEESCCCC-CCCCC---
T ss_pred cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-c----cCCCCcchhccCCCCcc-ccccc---
Confidence 456778888999999999999887777788889999999999998873 2 23788999999999887 55543
Q ss_pred CCCCCCCCCccEEEccCCccccc-CCccccCCCCCceEeccCCcccCCCcc-ccccCCCCcEEECCCCcCc-----cccC
Q 036117 460 SKSDFGPRFLRNVSFSYNNFSGK-LPPGICRGGNLIYLTANVNKLVGPIPE-SLWNCTGLTRVRLEQNRLD-----GDIT 532 (641)
Q Consensus 460 ~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~l~-----~~~~ 532 (641)
.. .++.|++++|++++. .+..+..+++|+.|++++|++.+..+. .+..+++|+.|++++|.+. +..+
T Consensus 400 ~~------~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~ 473 (844)
T 3j0a_A 400 NL------TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473 (844)
T ss_dssp CT------TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS
T ss_pred cc------ccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccch
Confidence 12 688999999988753 223456788999999999998865443 3556788999999999886 3345
Q ss_pred cccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCC
Q 036117 533 NALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSF 612 (641)
Q Consensus 533 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~ 612 (641)
..+..+++|+.|+|++|++++..|..+..+++|++|+|++|++++..|..+. ++|+.|+|++|++++.+|..+ .+
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~ 548 (844)
T 3j0a_A 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VS 548 (844)
T ss_dssp SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SS
T ss_pred hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CC
Confidence 6678889999999999999988888889999999999999999876666655 789999999999998877654 47
Q ss_pred CCEEeCcCCCCcccC
Q 036117 613 LIRLNLRRNQLSDKI 627 (641)
Q Consensus 613 L~~l~l~~n~l~~~~ 627 (641)
|+.+++++|++....
T Consensus 549 L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 549 LSVLDITHNKFICEC 563 (844)
T ss_dssp CCEEEEEEECCCCSS
T ss_pred cCEEEecCCCccccc
Confidence 889999999887543
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-52 Score=461.65 Aligned_cols=493 Identities=18% Similarity=0.263 Sum_probs=254.0
Q ss_pred cHHHHHHHHHHHhcCCCCC----------CCCCCCCCCCCCCccc---cceeeCCCCCEEEEEcCCCCCccccCCcCCCC
Q 036117 20 AQKEAKALLNWKSSLVSSS----------LPSWTAINSNSGPCNW---NGIQCNEVGSISEINLANSGLDGTLDGFDFSA 86 (641)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~----------~~~W~~~~~~~~~c~~---~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~ 86 (641)
...|+.||.+++.++..+. .++|... .+||.| .||.|+..++|+.|+|+++++.|.+| +.+++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~---~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp-~~l~~ 103 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN---KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVP-DAIGQ 103 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS---SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEEC-GGGGG
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC---CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCC-hHHhc
Confidence 3468999999999986543 2368754 789999 99999888999999999999999999 89999
Q ss_pred CCCCCEEECCCCCC------Cc------cCchhccCCCCCCEEECCCCcCCCCCccccCCC-------------------
Q 036117 87 FPNLTALNLNMNNL------VG------SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYL------------------- 135 (641)
Q Consensus 87 l~~L~~L~L~~n~~------~~------~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l------------------- 135 (641)
+++|++|+|++|.+ .+ .+|... +..|+ ++++++.+.+.+|..+..+
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 180 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCC
T ss_pred CccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccc
Confidence 99999999999976 22 334333 45566 7777777777666655411
Q ss_pred CCCCEEEcc--cccCCCCCChhccCCCCCcEEEeccccCCCCC-CcccCCCCCCCEEEcCCCCC-CCCchhhc--CCCCC
Q 036117 136 SDLRVLLLY--NNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD-PVKFKGMASLTDLWLDYNLL-EKFPSFIA--ECSKL 209 (641)
Q Consensus 136 ~~L~~L~l~--~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~~~~-~~l~~~l~--~~~~L 209 (641)
..++.+.+. .|.+++ +|..++++++|++|++++|.+++.. ...... . +.... +.+|..++ ++++|
T Consensus 181 ~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~--~------~~~~~~~~ip~~l~~~~l~~L 251 (636)
T 4eco_A 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN--E------NSEYAQQYKTEDLKWDNLKDL 251 (636)
T ss_dssp CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC--T------TSHHHHHHTTSCCCGGGCTTC
T ss_pred cchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc--c------ccchhcccCchhhhhcccCCC
Confidence 112222221 355666 6777777777777777777766530 000000 0 00000 00344444 44444
Q ss_pred cEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCc-ccc-cCCcccCCC------CCCCEEEcCCCcCCccCCc--ccCCC
Q 036117 210 MFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNS-FEG-EIPREIKTF------PKLRHLKLGQNKLTGTIPD--EIGLL 279 (641)
Q Consensus 210 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~L~~~~l~~~~~~--~l~~~ 279 (641)
++|++++|.+.+.+|.. +.++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.++ .+|. .++.+
T Consensus 252 ~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l 329 (636)
T 4eco_A 252 TDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM 329 (636)
T ss_dssp CEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC
T ss_pred CEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC
Confidence 44444444444444422 2444444444444444 443 344433332 44444444444444 3333 34444
Q ss_pred CcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCC-CCEEEccCccccccCchhhhcCC--CCCe
Q 036117 280 SNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCAN-LTFLELSINNLTGSLPLSLASLR--QISE 356 (641)
Q Consensus 280 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~l~~~~--~L~~ 356 (641)
++|++|++++|.+.+.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+ +|+.
T Consensus 330 ~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~ 406 (636)
T 4eco_A 330 KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA 406 (636)
T ss_dssp TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEE
T ss_pred CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCE
Confidence 444444444444443333 3333444444444444433 33333333444 444444444444 3333322211 2333
Q ss_pred EeCCcccccccceeecccccccccCCcCCC-------CCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccC
Q 036117 357 LGISNNQLSEIISLQLQMNDLSGKLPPEIG-------LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSI 429 (641)
Q Consensus 357 L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~-------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 429 (641)
|+ +++|.+.+..|..+. .+++|++|++++|++++..+..+..+++|++|++++|.++ .+
T Consensus 407 L~-------------Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i 472 (636)
T 4eco_A 407 ID-------------FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EI 472 (636)
T ss_dssp EE-------------CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BC
T ss_pred EE-------------CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-Cc
Confidence 33 222222222333333 3445666666666655333333444556666666666555 33
Q ss_pred ccc-ccCC-------CCCCEEEccCCcCcccCCcchh--cCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEecc
Q 036117 430 PST-IGNL-------SSLVKLSLSSNQLTGTLPPEIG--NSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTAN 499 (641)
Q Consensus 430 ~~~-l~~l-------~~L~~L~ls~n~l~~~~~~~~~--~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~ 499 (641)
|.. +... ++|++|++++|.++ .+|..+. .++ +|++|++++|++++ +|..+..+++|+.|+++
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~------~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP------YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT------TCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred CHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC------CcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence 322 1111 14555555555554 4444433 333 44444444444443 44444444444444442
Q ss_pred CCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCc
Q 036117 500 VNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIK 576 (641)
Q Consensus 500 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 576 (641)
+|+ ++++|++.+.+|..++.+++|++|++++|++ +.+|..+. ++|++|++++|++.
T Consensus 545 ~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 545 NQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp SCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 211 1134555555666666666666666666666 34454443 56666666666554
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-50 Score=460.18 Aligned_cols=511 Identities=22% Similarity=0.195 Sum_probs=428.8
Q ss_pred EEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCC-ChhccCCCCCcEEEeccc
Q 036117 92 ALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQI-PHQLSNLQNAWLLRIGAN 170 (641)
Q Consensus 92 ~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n 170 (641)
..+.++++++ .+|. ..+++++|+|++|.+++..|..|+++++|++|++++|...+.+ |..|.++++|++|++++|
T Consensus 8 ~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 4555666666 4565 4578999999999999888999999999999999999665555 788999999999999999
Q ss_pred cCCCCCCcccCCCCCCCEEEcCCCCCCC-Cchh--hcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccccc
Q 036117 171 YLEDPDPVKFKGMASLTDLWLDYNLLEK-FPSF--IAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGE 247 (641)
Q Consensus 171 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~-l~~~--l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 247 (641)
.+.+..+..|.++++|++|++++|.+.. ++.. +.++++|++|++++|.+.+..+...++++++|++|++++|.+++.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 9999999999999999999999999954 5554 899999999999999998665556679999999999999999988
Q ss_pred CCcccCCC--CCCCEEEcCCCcCCccCCcccCCCCc------ccEeeeecccccccCccccCC---CCCCCeeeccCcc-
Q 036117 248 IPREIKTF--PKLRHLKLGQNKLTGTIPDEIGLLSN------LEILEFHENLFHGLIPSSLGN---LRRLQRLNLKSAG- 315 (641)
Q Consensus 248 ~~~~l~~l--~~L~~L~L~~~~l~~~~~~~l~~~~~------L~~L~l~~n~~~~~~~~~l~~---l~~L~~L~l~~~~- 315 (641)
.+..+..+ ++|+.|++++|.+.+..+..++.+++ |++|++++|.+.+..+..+.. ...++.+.+..+.
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 88888877 89999999999999888877777665 999999999988777766543 2567778776332
Q ss_pred --------CCCCCCcCCCC--CCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCC
Q 036117 316 --------LNSSIPKELGF--CANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI 385 (641)
Q Consensus 316 --------~~~~~~~~l~~--~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l 385 (641)
+.+.....+.. .++|+.|++++|.+.+..+..+..+++|+.|++++|++ .+..+..+
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i-------------~~~~~~~~ 310 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI-------------NKIADEAF 310 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCC-------------CEECTTTT
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcC-------------CCCChHHh
Confidence 22222223333 37899999999999988888899999999999666554 44566778
Q ss_pred CCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCC
Q 036117 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFG 465 (641)
Q Consensus 386 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~ 465 (641)
..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++ ++. ++
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~----~~---- 381 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHF----IP---- 381 (844)
T ss_dssp TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSS----CC----
T ss_pred cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccC----CC----
Confidence 899999999999999998889999999999999999999987777789999999999999999873 222 33
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCC-ccccccCCCCcEEECCCCcCccccCc-ccCCCCCCcE
Q 036117 466 PRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPI-PESLWNCTGLTRVRLEQNRLDGDITN-ALGIYPDLQY 543 (641)
Q Consensus 466 ~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~ 543 (641)
+|+.|++++|+++ .+|.. ...++.+++++|++.+.. +..+.++++|+.|++++|++.+..+. .+..+++|+.
T Consensus 382 --~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~ 455 (844)
T 3j0a_A 382 --SIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455 (844)
T ss_dssp --SCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCB
T ss_pred --CcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcccc
Confidence 8999999999998 55543 567999999999998642 33466899999999999999865443 4566899999
Q ss_pred EeCCCCccc-----ccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeC
Q 036117 544 IDLGDNQLS-----GVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNL 618 (641)
Q Consensus 544 L~Ls~n~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l 618 (641)
|++++|.++ +..+..+..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..+. ++|+.|++
T Consensus 456 L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~L 533 (844)
T 3j0a_A 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDI 533 (844)
T ss_dssp CEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEE
T ss_pred ccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEEC
Confidence 999999987 44556788999999999999999999999999999999999999999965555444 89999999
Q ss_pred cCCCCcccCcccccCCCC
Q 036117 619 RRNQLSDKIPAEIGKLSR 636 (641)
Q Consensus 619 ~~n~l~~~~p~~~~~l~~ 636 (641)
++|++++.+|..+.++..
T Consensus 534 s~N~l~~~~~~~~~~L~~ 551 (844)
T 3j0a_A 534 SRNQLLAPNPDVFVSLSV 551 (844)
T ss_dssp EEECCCCCCSCCCSSCCE
T ss_pred CCCcCCCCChhHhCCcCE
Confidence 999999999988775543
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-50 Score=451.54 Aligned_cols=480 Identities=20% Similarity=0.270 Sum_probs=263.4
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCCCCCCC--CCCCC--ccc------------cceeeCCCCCEEEEEcCCCCCccccCCc
Q 036117 19 SAQKEAKALLNWKSSLVSSSLPSWTAIN--SNSGP--CNW------------NGIQCNEVGSISEINLANSGLDGTLDGF 82 (641)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~~~~~~W~~~~--~~~~~--c~~------------~gv~c~~~~~v~~l~l~~~~~~~~~~~~ 82 (641)
...+|+.||++||+++..+ +|.... ...+| |.| .||.|+..++|+.|+|+++++.|.+| +
T Consensus 266 ~~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip-~ 341 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK---NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP-D 341 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEEC-G
T ss_pred cchHHHHHHHHHHHHcCCC---CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCc-h
Confidence 4567999999999999654 896542 01355 999 99999988999999999999999999 8
Q ss_pred CCCCCCCCCEEEC-CCCCCCccCchhccCC-CCCCE--------------EEC-CCCcCCC-----------CCccccCC
Q 036117 83 DFSAFPNLTALNL-NMNNLVGSIPAGIGNA-TKLIL--------------LDL-SSNNLTN-----------PIPPEIGY 134 (641)
Q Consensus 83 ~~~~l~~L~~L~L-~~n~~~~~~~~~l~~l-~~L~~--------------L~L-~~n~l~~-----------~~p~~l~~ 134 (641)
.++++++|++|+| ++|.+.|..|...... ..+.. ++. ....+.+ ..+.....
T Consensus 342 ~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~ 421 (876)
T 4ecn_A 342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421 (876)
T ss_dssp GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCC
T ss_pred HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccc
Confidence 9999999999999 8887766533211000 00000 000 0000000 00000011
Q ss_pred CCCCCEEEccc--ccCCCCCChhccCCCCCcEEEeccccCCCC-----------------CCcccC--CCCCCCEEEcCC
Q 036117 135 LSDLRVLLLYN--NSLTGQIPHQLSNLQNAWLLRIGANYLEDP-----------------DPVKFK--GMASLTDLWLDY 193 (641)
Q Consensus 135 l~~L~~L~l~~--n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-----------------~~~~l~--~l~~L~~L~l~~ 193 (641)
...++.+.+.. |.+++ +|..+.++++|++|++++|.+++. .|..+. ++++|++|++++
T Consensus 422 ~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~ 500 (876)
T 4ecn_A 422 RISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500 (876)
T ss_dssp CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred ccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC
Confidence 12233333332 55555 566666666666666666666651 333333 444455555544
Q ss_pred CCC-CCCchhhcCCCCCcEEEeeCCc-CCC-CCChhh------hcCCCCCcEEeccCCcccccCCc--ccCCCCCCCEEE
Q 036117 194 NLL-EKFPSFIAECSKLMFLDLSDNL-IMG-HIPIEQ------LTHLENLEYLNLTKNSFEGEIPR--EIKTFPKLRHLK 262 (641)
Q Consensus 194 ~~~-~~l~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~------l~~l~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~ 262 (641)
|.+ +.+|..+.++++|++|++++|. +.+ .+|..+ +..+++|++|++++|.++ .+|. .+..+++|++|+
T Consensus 501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~ 579 (876)
T 4ecn_A 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLD 579 (876)
T ss_dssp CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEE
T ss_pred CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEE
Confidence 443 4445555555555555555554 443 333221 123345666666666555 4555 555566666666
Q ss_pred cCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCC-CCeeeccCccCCCCCCcCCCCCC--CCCEEEccCcc
Q 036117 263 LGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRR-LQRLNLKSAGLNSSIPKELGFCA--NLTFLELSINN 339 (641)
Q Consensus 263 L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~n~ 339 (641)
+++|.+. .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+...+ +|+.|++++|+
T Consensus 580 Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 580 CVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp CTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred CCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCc
Confidence 6666555 444 4555555666666555555 44444555555 555555555554 3344433332 25555555555
Q ss_pred ccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCC--CCCCCCEEEccCCcCcCCchhhhhCCCCCCe
Q 036117 340 LTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIG--LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFD 417 (641)
Q Consensus 340 l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 417 (641)
+.+.+|.. +..+. .+++|+.|++++|+++...+..+..+++|+.
T Consensus 656 l~g~ip~l----------------------------------~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~ 701 (876)
T 4ecn_A 656 IGSEGRNI----------------------------------SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701 (876)
T ss_dssp TTTTSSSC----------------------------------SSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSE
T ss_pred CCCccccc----------------------------------hhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCE
Confidence 54433211 01111 2346777777777777433333446777777
Q ss_pred EecccCcCCccCcccccC--------CCCCCEEEccCCcCcccCCcchh--cCCCCCCCCCccEEEccCCcccccCCccc
Q 036117 418 LQLANNFFNGSIPSTIGN--------LSSLVKLSLSSNQLTGTLPPEIG--NSKSDFGPRFLRNVSFSYNNFSGKLPPGI 487 (641)
Q Consensus 418 L~l~~n~l~~~~~~~l~~--------l~~L~~L~ls~n~l~~~~~~~~~--~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 487 (641)
|++++|.+. .+|..+.. +++|++|++++|.++ .+|..+. .++ +|+.|++++|++++ +|..+
T Consensus 702 L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~------~L~~L~Ls~N~L~~-lp~~l 772 (876)
T 4ecn_A 702 IILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP------YLSNMDVSYNCFSS-FPTQP 772 (876)
T ss_dssp EECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT------TCCEEECCSSCCSS-CCCGG
T ss_pred EECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC------CcCEEEeCCCCCCc-cchhh
Confidence 777777777 44443322 226777777777666 5565554 444 66666666666664 56666
Q ss_pred cCCCCCceEeccC------CcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCccccc
Q 036117 488 CRGGNLIYLTANV------NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGV 554 (641)
Q Consensus 488 ~~~~~L~~L~l~~------n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 554 (641)
..+++|+.|++++ |++.+.+|..+.++++|+.|++++|++ +.+|..+. ++|+.|||++|++...
T Consensus 773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 6666666666655 344444444444444444444444444 33333322 3444444444444433
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-49 Score=430.27 Aligned_cols=494 Identities=19% Similarity=0.186 Sum_probs=334.4
Q ss_pred CCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEe
Q 036117 88 PNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRI 167 (641)
Q Consensus 88 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 167 (641)
+++++|++++|.+++..+..|..+++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 57999999999999887888999999999999999999877888999999999999999999888889999999999999
Q ss_pred ccccCCCCCCcccCCCCCCCEEEcCCCCCCC--CchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCC----cEEeccC
Q 036117 168 GANYLEDPDPVKFKGMASLTDLWLDYNLLEK--FPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENL----EYLNLTK 241 (641)
Q Consensus 168 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~--l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L----~~L~l~~ 241 (641)
++|.+.+.....+.++++|++|++++|.+.. +|..+.++++|++|++++|.+.+ ++...+..+++| +.+++++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE-ECGGGGHHHHTCTTCCCEEECTT
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce-ecHHHccchhccchhhhhcccCC
Confidence 9999998887778999999999999998864 68888888999999999888873 333444666666 7888888
Q ss_pred CcccccCCcccCCCCCCCEEEcCCCcCCc-cCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCC
Q 036117 242 NSFEGEIPREIKTFPKLRHLKLGQNKLTG-TIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSI 320 (641)
Q Consensus 242 n~~~~~~~~~l~~l~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 320 (641)
|.+.+..+..+... +|++|++++|.... .++..+..++.++...+....+... ..++.+ .
T Consensus 187 n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~--------~~l~~~----------~ 247 (570)
T 2z63_A 187 NPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--------GNLEKF----------D 247 (570)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC--------SSCEEC----------C
T ss_pred CCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc--------hhhhhc----------c
Confidence 88876666666554 68888887764332 2233445555555555443222110 111100 0
Q ss_pred CcCCCCCC--CCCEEEccCc-cccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEcc
Q 036117 321 PKELGFCA--NLTFLELSIN-NLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLF 397 (641)
Q Consensus 321 ~~~l~~~~--~L~~L~l~~n-~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~ 397 (641)
...+..++ .++.++++++ .+.+..|..+..+++|+.|++++|.+. .+|..+..+ +|++|+++
T Consensus 248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--------------~l~~~~~~~-~L~~L~l~ 312 (570)
T 2z63_A 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE--------------RVKDFSYNF-GWQHLELV 312 (570)
T ss_dssp TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC--------------SCCBCCSCC-CCSEEEEE
T ss_pred hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch--------------hhhhhhccC-CccEEeec
Confidence 01111111 2445555555 455555566666666666665444432 234445555 66666666
Q ss_pred CCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccC--CcchhcCCCCCCCCCccEEEcc
Q 036117 398 DNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTL--PPEIGNSKSDFGPRFLRNVSFS 475 (641)
Q Consensus 398 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~--~~~~~~~~~~~~~~~L~~L~ls 475 (641)
+|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..++ +|++|+++
T Consensus 313 ~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~------~L~~L~l~ 381 (570)
T 2z63_A 313 NCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTT------SLKYLDLS 381 (570)
T ss_dssp SCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCS------CCCEEECC
T ss_pred cCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccC------ccCEEECC
Confidence 66665 3332 3556666666666666544433 45666666666666665432 44455555 66777777
Q ss_pred CCcccccCCccccCCCCCceEeccCCcccCCCc-cccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCccc-c
Q 036117 476 YNNFSGKLPPGICRGGNLIYLTANVNKLVGPIP-ESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLS-G 553 (641)
Q Consensus 476 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~-~ 553 (641)
+|.+.+. +..+..+++|+.|++++|.+.+..| ..+.++++|++|++++|.+.+..+..++.+++|++|++++|+++ +
T Consensus 382 ~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 460 (570)
T 2z63_A 382 FNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460 (570)
T ss_dssp SCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence 7666543 3336666777777777777665544 35666777777777777777666666677777777777777765 4
Q ss_pred cCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCc
Q 036117 554 VLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIP 628 (641)
Q Consensus 554 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p 628 (641)
.+|..+..+++|++|++++|++++..|..++++++|++|++++|++++..|..+..+++|+.|++++|++++.+|
T Consensus 461 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 566667777777777777777776666677777777777777777765555556667777777777777776665
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-49 Score=431.90 Aligned_cols=490 Identities=18% Similarity=0.172 Sum_probs=337.8
Q ss_pred CCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEE
Q 036117 62 VGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVL 141 (641)
Q Consensus 62 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 141 (641)
..+++.|+++++.+.+..+ ..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|+++++|++|
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp CSSCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred cccccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 3579999999999986655 789999999999999999998888899999999999999999998888899999999999
Q ss_pred EcccccCCCCCChhccCCCCCcEEEeccccCCCC-CCcccCCCCCCCEEEcCCCCCCCC-chhhcCCCCC----cEEEee
Q 036117 142 LLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDP-DPVKFKGMASLTDLWLDYNLLEKF-PSFIAECSKL----MFLDLS 215 (641)
Q Consensus 142 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~~~~~~l-~~~l~~~~~L----~~L~l~ 215 (641)
++++|.+++..+..++++++|++|++++|.+.+. .+..+.++++|++|++++|.+..+ +..+..+++| +.++++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 9999999977666799999999999999999885 478899999999999999999766 4567777777 899999
Q ss_pred CCcCCCCCChhhhcCCCCCcEEeccCCccc-ccCCcccCCCCCCCEEEcCCCcCCc------cCCcccCCCC--cccEee
Q 036117 216 DNLIMGHIPIEQLTHLENLEYLNLTKNSFE-GEIPREIKTFPKLRHLKLGQNKLTG------TIPDEIGLLS--NLEILE 286 (641)
Q Consensus 216 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~L~~~~l~~------~~~~~l~~~~--~L~~L~ 286 (641)
+|.+.+. +...+... +|++|++++|... ..++..+..++.++...+....+.. .....+..++ .++.++
T Consensus 186 ~n~l~~~-~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 186 LNPMNFI-QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp TCCCCEE-CTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred CCCceec-CHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 9999844 44454544 7999999988533 2345566777777776654432221 1111122222 234455
Q ss_pred eecc-cccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCccccc
Q 036117 287 FHEN-LFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLS 365 (641)
Q Consensus 287 l~~n-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~ 365 (641)
+.++ .+.+..+..+..+++|+++++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|+
T Consensus 264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~------- 331 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLT------- 331 (570)
T ss_dssp EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEE-------
T ss_pred hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEe-------
Confidence 5554 444455555555556666666655554 344444444 5555555555555 3332 2344444444
Q ss_pred ccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccC--cccccCCCCCCEEE
Q 036117 366 EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSI--PSTIGNLSSLVKLS 443 (641)
Q Consensus 366 ~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~ 443 (641)
+++|.+.+..+. ..+++|++|++++|.+.+.. +..+..+++|++|+
T Consensus 332 ------------------------------l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 379 (570)
T 2z63_A 332 ------------------------------FTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379 (570)
T ss_dssp ------------------------------EESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEE
T ss_pred ------------------------------CcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEE
Confidence 444443333222 33444444444444444221 33344444555555
Q ss_pred ccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCC-ccccCCCCCceEeccCCcccCCCccccccCCCCcEEEC
Q 036117 444 LSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLP-PGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRL 522 (641)
Q Consensus 444 ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 522 (641)
+++|.+.+.. ..+..++ +|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+.++++|++|++
T Consensus 380 l~~n~l~~~~-~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 452 (570)
T 2z63_A 380 LSFNGVITMS-SNFLGLE------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452 (570)
T ss_dssp CCSCSEEEEE-EEEETCT------TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred CCCCcccccc-ccccccC------CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence 5555444222 2233333 45555555555544333 34556667777777777777667777777788888888
Q ss_pred CCCcCc-cccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcc
Q 036117 523 EQNRLD-GDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG 601 (641)
Q Consensus 523 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 601 (641)
++|++. +.+|..++.+++|++|++++|++++..|..+.++++|++|++++|++++..|..+.++++|++|++++|++++
T Consensus 453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 888776 4677777888888888888888887778888888888888888888887777778888888888888888887
Q ss_pred cCCc
Q 036117 602 KIPA 605 (641)
Q Consensus 602 ~ip~ 605 (641)
.+|.
T Consensus 533 ~~~~ 536 (570)
T 2z63_A 533 SCPR 536 (570)
T ss_dssp CTTT
T ss_pred CCcc
Confidence 7663
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.5e-48 Score=418.47 Aligned_cols=493 Identities=19% Similarity=0.203 Sum_probs=261.0
Q ss_pred CccccceeeCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCcc
Q 036117 51 PCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPP 130 (641)
Q Consensus 51 ~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 130 (641)
.|.|.|+ |+ .++++++ .+| ..+ .++|++|++++|.+++..|..|..+++|++|++++|.+++..|.
T Consensus 3 ~C~~~~~-c~---------~~~~~l~-~ip-~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CD---------GRSRSFT-SIP-SGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EE---------CTTSCCS-SCC-SCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EE---------CCCCccc-ccc-ccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4899888 74 3344444 444 233 26889999999988877788888889999999999988877778
Q ss_pred ccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCC-CCcccCCCCCCCEEEcCCCC-CCCCc-hhhcCCC
Q 036117 131 EIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDP-DPVKFKGMASLTDLWLDYNL-LEKFP-SFIAECS 207 (641)
Q Consensus 131 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~~~-~~~l~-~~l~~~~ 207 (641)
+|+.+++|++|++++|.+++..+..|+++++|++|++++|.+.+. .+..+.++++|++|++++|. ++.+| ..+.+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 888888888888888888877777788888888888888877653 23455555566665555554 34443 2444555
Q ss_pred CCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcc-cCCCCCCCEEEcCCCcCCccC--C-cccCCCCccc
Q 036117 208 KLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPRE-IKTFPKLRHLKLGQNKLTGTI--P-DEIGLLSNLE 283 (641)
Q Consensus 208 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~~--~-~~l~~~~~L~ 283 (641)
+|++|++++|.+.+..+.. +..+++|++|++++|.+. .++.. +..+++|++|++++|.+.+.. + .....+++|+
T Consensus 149 ~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~ 226 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226 (549)
T ss_dssp EEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCC
T ss_pred ccCeeeccCCcccccChhh-hhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhccc
Confidence 5555555555554333322 244445555555544443 12222 223444444444444444321 0 0112233444
Q ss_pred EeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccC------chhhhcCCCCCeE
Q 036117 284 ILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSL------PLSLASLRQISEL 357 (641)
Q Consensus 284 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~------~~~l~~~~~L~~L 357 (641)
.|++++|.+.+..+..+ +..+..+++|+.+++++|.+.+.. ...+..+++++.+
T Consensus 227 ~L~l~~n~l~~~~~~~l--------------------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L 286 (549)
T 2z81_A 227 KLAFRGSVLTDESFNEL--------------------LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV 286 (549)
T ss_dssp EEEEESCEEEHHHHHHH--------------------HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEE
T ss_pred ceeccccccchhHHHHH--------------------HHHhhhhccccccccccccccccccccccchhhhhhhcccccc
Confidence 44444444332221111 111222334444444444333210 0112233344444
Q ss_pred eCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhh-hCCCCCCeEecccCcCCccCc---ccc
Q 036117 358 GISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI-GNLTNLFDLQLANNFFNGSIP---STI 433 (641)
Q Consensus 358 ~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~---~~l 433 (641)
++.++.+.... ....++......++|+.|++++|++. .+|..+ ..+++|++|++++|.+.+.++ ..+
T Consensus 287 ~l~~~~i~~~~--------~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 357 (549)
T 2z81_A 287 TIRRLHIPQFY--------LFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357 (549)
T ss_dssp EEESCBCSCGG--------GSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCT
T ss_pred cccccccchhh--------hcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhh
Confidence 44333322210 00001111112345666666666655 333333 356666666666666655442 224
Q ss_pred cCCCCCCEEEccCCcCcccCC--cchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCcccc
Q 036117 434 GNLSSLVKLSLSSNQLTGTLP--PEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESL 511 (641)
Q Consensus 434 ~~l~~L~~L~ls~n~l~~~~~--~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 511 (641)
..+++|++|++++|.+++..+ ..+..++ +|++|++++|+++ .+|..+..+++|+.|++++|++. .+|..+
T Consensus 358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~------~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~ 429 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLK------NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI 429 (549)
T ss_dssp TSSTTCCEEECTTSCCCCHHHHHHHGGGCT------TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS
T ss_pred hccccCcEEEccCCcccccccchhhhhcCC------CCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh
Confidence 555666666666666543211 2233344 5566666666555 45555555555566666555554 222222
Q ss_pred ccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCE
Q 036117 512 WNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQN 591 (641)
Q Consensus 512 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 591 (641)
.++|++|++++|++++.. +.+++|++|++++|+++ .+|. ...+++|++|++++|++++..|..++.+++|++
T Consensus 430 --~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 501 (549)
T 2z81_A 430 --PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501 (549)
T ss_dssp --CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCE
T ss_pred --cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCE
Confidence 135566666666555422 34555666666666555 3333 344555666666666665555555555666666
Q ss_pred EeCCCCcCcccCC
Q 036117 592 LDIFDNQLTGKIP 604 (641)
Q Consensus 592 L~L~~n~l~~~ip 604 (641)
|++++|++.+..|
T Consensus 502 L~l~~N~~~~~~~ 514 (549)
T 2z81_A 502 IWLHTNPWDCSCP 514 (549)
T ss_dssp EECCSSCBCCCHH
T ss_pred EEecCCCccCCCc
Confidence 6666666555544
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.1e-47 Score=411.21 Aligned_cols=489 Identities=19% Similarity=0.182 Sum_probs=352.1
Q ss_pred CCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEec
Q 036117 89 NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIG 168 (641)
Q Consensus 89 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 168 (641)
...+.+.+++.++ .+|..+. ++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 6 ~~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 6 ASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp TTSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence 3344677777776 4555443 678888888888877777778888888888888888877777777777888888888
Q ss_pred cccCCCCCCcccCCCCCCCEEEcCCCCCCC--CchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccc
Q 036117 169 ANYLEDPDPVKFKGMASLTDLWLDYNLLEK--FPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEG 246 (641)
Q Consensus 169 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~--l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 246 (641)
+|.+.+..+..|.++++|++|++++|.+.. .|..+.++++|++|++++|...+.++...+.++++|++|++++|.+++
T Consensus 83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 777777766667777777777777776653 344566666666666666654444444444555555555555555555
Q ss_pred cCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCC---CcC
Q 036117 247 EIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSI---PKE 323 (641)
Q Consensus 247 ~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~ 323 (641)
..|..+..+++|++|++++|.+. ......+..+++|++|++++|.+.+.. ...
T Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 218 (549)
T 2z81_A 163 YQSQSLKSIRDIHHLTLHLSESA------------------------FLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218 (549)
T ss_dssp ECTTTTTTCSEEEEEEEECSBST------------------------THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSS
T ss_pred cChhhhhccccCceEecccCccc------------------------ccchhhHhhcccccEEEccCCccccccccccch
Confidence 45555555555555555544443 221112233455555555555554321 112
Q ss_pred CCCCCCCCEEEccCccccccCchh----hhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCC
Q 036117 324 LGFCANLTFLELSINNLTGSLPLS----LASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDN 399 (641)
Q Consensus 324 l~~~~~L~~L~l~~n~l~~~~~~~----l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n 399 (641)
...+++|+.|++++|.+++..+.. +..+++|+.+++++|.+..+..+ .......+..+++++.|++.++
T Consensus 219 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~-------~~~~~~~~~~l~~L~~L~l~~~ 291 (549)
T 2z81_A 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF-------NPSESDVVSELGKVETVTIRRL 291 (549)
T ss_dssp CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC-------CCCTTTCCCCCTTCCEEEEESC
T ss_pred hhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc-------cccchhhhhhhccccccccccc
Confidence 345678999999999888754443 45678899999888876544221 1111234566789999999998
Q ss_pred cCcCC-----chhhhhCCCCCCeEecccCcCCccCcccc-cCCCCCCEEEccCCcCcccCCcc---hhcCCCCCCCCCcc
Q 036117 400 KFSGP-----IPQQIGNLTNLFDLQLANNFFNGSIPSTI-GNLSSLVKLSLSSNQLTGTLPPE---IGNSKSDFGPRFLR 470 (641)
Q Consensus 400 ~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~ls~n~l~~~~~~~---~~~~~~~~~~~~L~ 470 (641)
.+... ++..+...++|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+.+|.. +..++ +|+
T Consensus 292 ~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~------~L~ 364 (549)
T 2z81_A 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP------SLQ 364 (549)
T ss_dssp BCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST------TCC
T ss_pred ccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccc------cCc
Confidence 76542 2233445679999999999987 677655 57999999999999998776432 44555 899
Q ss_pred EEEccCCcccccCC--ccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCC
Q 036117 471 NVSFSYNNFSGKLP--PGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGD 548 (641)
Q Consensus 471 ~L~ls~n~l~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 548 (641)
+|++++|++++..+ ..+..+++|++|++++|++. .+|..+..+++|++|++++|.+.+ ++..+ .++|++|++++
T Consensus 365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~ 440 (549)
T 2z81_A 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSN 440 (549)
T ss_dssp EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCS
T ss_pred EEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCC
Confidence 99999999975422 45788999999999999998 788889999999999999999874 33332 36899999999
Q ss_pred CcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCc
Q 036117 549 NQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIP 628 (641)
Q Consensus 549 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p 628 (641)
|++++.+ ..+++|++|++++|+++ .+|. ...+++|++|+|++|++++.+|..+..+++|+.|++++|++++..|
T Consensus 441 N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 441 NNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999753 57899999999999998 6776 4789999999999999998888889999999999999999998887
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-45 Score=398.29 Aligned_cols=459 Identities=20% Similarity=0.223 Sum_probs=314.3
Q ss_pred CEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccc
Q 036117 91 TALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGAN 170 (641)
Q Consensus 91 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 170 (641)
+++++++|+++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57899999988 5676665 88999999999999877788999999999999999998888888999999999999999
Q ss_pred cCCCCCCcccCCCCCCCEEEcCCCCCCC--CchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCC--cEEeccCCcc--
Q 036117 171 YLEDPDPVKFKGMASLTDLWLDYNLLEK--FPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENL--EYLNLTKNSF-- 244 (641)
Q Consensus 171 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~--l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~n~~-- 244 (641)
.++.++.. .+++|++|++++|.+.. +|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+
T Consensus 80 ~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 80 KLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp CCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTT
T ss_pred ceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccc
Confidence 88854433 78888888888888854 56788888888888888888764 234566666 8888888877
Q ss_pred cccCCcccCCCC-CCCEEEcCCCcCCccCCc-ccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCc
Q 036117 245 EGEIPREIKTFP-KLRHLKLGQNKLTGTIPD-EIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPK 322 (641)
Q Consensus 245 ~~~~~~~l~~l~-~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 322 (641)
.+..|..+..+. +...+++++|.+.+.++. .+..+++|+.+++++|....... .+.+.++
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----------------~~~~~~~- 214 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS-----------------YFLSILA- 214 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-----------------HHHHHHH-
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc-----------------eeecchh-
Confidence 556666665544 233456666666554433 34556666666666664100000 0111122
Q ss_pred CCCCCCCCCEEEccCccccccCchhhh---cCCCCCeEeCCcccccccceeecccccccccCCcCC-----CCCCCCCEE
Q 036117 323 ELGFCANLTFLELSINNLTGSLPLSLA---SLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI-----GLLPKLEYL 394 (641)
Q Consensus 323 ~l~~~~~L~~L~l~~n~l~~~~~~~l~---~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l-----~~~~~L~~L 394 (641)
.+..+++|+.|++++|.+.+..+..+. ..++|++|+ +++|.+.|.+|..+ +.+++|+.+
T Consensus 215 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~-------------l~~n~l~~~~p~~~~~~~~~~l~~L~~l 281 (520)
T 2z7x_B 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS-------------ISNVKLQGQLDFRDFDYSGTSLKALSIH 281 (520)
T ss_dssp GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE-------------EEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE-------------eecccccCccccchhhcccccCceeEec
Confidence 234445555555555555432222111 123455554 44444444555555 667778888
Q ss_pred EccCCcCcCCch-hhhhCC---CCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCcc
Q 036117 395 YLFDNKFSGPIP-QQIGNL---TNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR 470 (641)
Q Consensus 395 ~L~~n~l~~~~~-~~~~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~ 470 (641)
++++|.+ .+| ..+..+ .+|+.|++++|.+.... ....+++|++|++++|.+++.+|..+..++ +|+
T Consensus 282 ~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~ 351 (520)
T 2z7x_B 282 QVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLT------ELE 351 (520)
T ss_dssp EEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCS------SCC
T ss_pred cccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCC------CCC
Confidence 8888877 334 344333 57888888888775321 125677888888888888777777776666 788
Q ss_pred EEEccCCcccc--cCCccccCCCCCceEeccCCcccCCCccc-cccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCC
Q 036117 471 NVSFSYNNFSG--KLPPGICRGGNLIYLTANVNKLVGPIPES-LWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLG 547 (641)
Q Consensus 471 ~L~ls~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 547 (641)
+|++++|++++ .+|..+..+++|+.|++++|++.+.+|.. +..+++|++|++++|++++..+..+. ++|+.|+++
T Consensus 352 ~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls 429 (520)
T 2z7x_B 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLH 429 (520)
T ss_dssp EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECC
T ss_pred EEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECC
Confidence 88888887775 45566777778888888888877655543 66777788888888877766665543 677888888
Q ss_pred CCcccccCChhhhcCCCCCEEeCcCCcCcccCCcc-ccCCCCCCEEeCCCCcCcccCC
Q 036117 548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAE-LGNLTYLQNLDIFDNQLTGKIP 604 (641)
Q Consensus 548 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~ip 604 (641)
+|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+..+
T Consensus 430 ~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 430 SNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 88777 66666667778888888888777 45544 7777778888888887776543
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.7e-47 Score=417.06 Aligned_cols=456 Identities=21% Similarity=0.299 Sum_probs=348.2
Q ss_pred CCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCC------C------CCChhccCCCCCcEEEeccccCCCCCCcc
Q 036117 112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLT------G------QIPHQLSNLQNAWLLRIGANYLEDPDPVK 179 (641)
Q Consensus 112 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~------~------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 179 (641)
.+++.|+|+++.+.|.+|.+++++++|++|++++|.+. + .+|... +..|+ ++++++.+.+..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~-- 155 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPR-- 155 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGG--
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCch--
Confidence 46889999999999999999999999999999999762 1 222222 33344 4455444443222
Q ss_pred cCCCCCCCEEEcCCCCCCCCchhhcC-CCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEecc--CCcccccCCcccCCCC
Q 036117 180 FKGMASLTDLWLDYNLLEKFPSFIAE-CSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLT--KNSFEGEIPREIKTFP 256 (641)
Q Consensus 180 l~~l~~L~~L~l~~~~~~~l~~~l~~-~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~--~n~~~~~~~~~l~~l~ 256 (641)
..+.. +..+..+++....+.. .....++.+.+. .|.+++ +|..+++++
T Consensus 156 ---------------------~~~~~~~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~ 206 (636)
T 4eco_A 156 ---------------------EDFSDLIKDCINSDPQQKSIKK-------SSRITLKDTQIGQLSNNITF-VSKAVMRLT 206 (636)
T ss_dssp ---------------------GGSCHHHHHHHHHCTTSCCCCC-------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCT
T ss_pred ---------------------hhHHHHHHHHhhcCcccccccc-------ccccchhhhhhccccCCCcc-CCHHHhccc
Confidence 11110 0111111111111110 111223333333 467777 888888899
Q ss_pred CCCEEEcCCCcCCcc-----------------CCcccC--CCCcccEeeeecccccccCccccCCCCCCCeeeccCcc-C
Q 036117 257 KLRHLKLGQNKLTGT-----------------IPDEIG--LLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAG-L 316 (641)
Q Consensus 257 ~L~~L~L~~~~l~~~-----------------~~~~l~--~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~-~ 316 (641)
+|++|++++|.+++. +|..++ .+++|++|++++|.+.+.+|..+.++++|++|++++|. +
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence 999999999988875 888888 89999999999999888888888899999999999998 8
Q ss_pred CC-CCCcCCCCC------CCCCEEEccCccccccCch--hhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCC
Q 036117 317 NS-SIPKELGFC------ANLTFLELSINNLTGSLPL--SLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGL 387 (641)
Q Consensus 317 ~~-~~~~~l~~~------~~L~~L~l~~n~l~~~~~~--~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~ 387 (641)
++ .+|..+..+ ++|++|++++|+++ .+|. .+..+++|+.|++++| .+.|.+| .++.
T Consensus 287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N-------------~l~g~ip-~~~~ 351 (636)
T 4eco_A 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN-------------QLEGKLP-AFGS 351 (636)
T ss_dssp CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC-------------CCEEECC-CCEE
T ss_pred ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC-------------cCccchh-hhCC
Confidence 77 677766655 89999999999998 7887 8888888988885544 4555667 7778
Q ss_pred CCCCCEEEccCCcCcCCchhhhhCCCC-CCeEecccCcCCccCcccccCCC--CCCEEEccCCcCcccCCcchhcCCC-C
Q 036117 388 LPKLEYLYLFDNKFSGPIPQQIGNLTN-LFDLQLANNFFNGSIPSTIGNLS--SLVKLSLSSNQLTGTLPPEIGNSKS-D 463 (641)
Q Consensus 388 ~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~ls~n~l~~~~~~~~~~~~~-~ 463 (641)
+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|++|++++|.+.+.+|..+..... .
T Consensus 352 l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 352 EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 889999999999988 77888888888 999999999988 7787776654 8999999999999888887762111 1
Q ss_pred CCCCCccEEEccCCcccccCCcc-ccCCCCCceEeccCCcccCCCccc-cccC-------CCCcEEECCCCcCccccCcc
Q 036117 464 FGPRFLRNVSFSYNNFSGKLPPG-ICRGGNLIYLTANVNKLVGPIPES-LWNC-------TGLTRVRLEQNRLDGDITNA 534 (641)
Q Consensus 464 ~~~~~L~~L~ls~n~l~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~-l~~~-------~~L~~L~l~~n~l~~~~~~~ 534 (641)
+..++|++|++++|+++ .+|.. +..++.|+.|++++|++. .+|.. +... ++|++|++++|++. .+|..
T Consensus 430 ~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 430 FKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp CCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred ccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence 11238999999999998 56655 445899999999999998 56544 3322 38999999999999 67777
Q ss_pred cC--CCCCCcEEeCCCCcccccCChhhhcCCCCCEEeC------cCCcCcccCCccccCCCCCCEEeCCCCcCcccCCcc
Q 036117 535 LG--IYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRI------SGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQ 606 (641)
Q Consensus 535 ~~--~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L------~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~ 606 (641)
+. .+++|+.|++++|++++ +|..+.++++|++|++ ++|++.+.+|..++++++|++|+|++|++ +.+|..
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 76 89999999999999997 8889999999999999 56778889999999999999999999999 689987
Q ss_pred ccCCCCCCEEeCcCCCCcc
Q 036117 607 LFRSSFLIRLNLRRNQLSD 625 (641)
Q Consensus 607 l~~~~~L~~l~l~~n~l~~ 625 (641)
+. ++|+.|++++|++..
T Consensus 585 ~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 585 IT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CC--TTCCEEECCSCTTCE
T ss_pred Hh--CcCCEEECcCCCCcc
Confidence 66 799999999997653
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.2e-44 Score=395.49 Aligned_cols=508 Identities=20% Similarity=0.160 Sum_probs=300.3
Q ss_pred CCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEe
Q 036117 88 PNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRI 167 (641)
Q Consensus 88 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 167 (641)
+++++|||++|++++..+.+|.++++|++|+|++|.+++..|.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 37889999999998777778899999999999999988777778888999999999999988777778889999999999
Q ss_pred ccccCCCCCCcccCCCCCCCEEEcCCCCCCC--CchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCC----CCcEEeccC
Q 036117 168 GANYLEDPDPVKFKGMASLTDLWLDYNLLEK--FPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLE----NLEYLNLTK 241 (641)
Q Consensus 168 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~--l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~----~L~~L~l~~ 241 (641)
++|.++++.+..|.++++|++|++++|.+.. +|..+..+++|++|++++|.+.+..+ ..+..+. ....++++.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-GGGHHHHTCTTCCCEEECTT
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc-ccccchhhhhhhhhhhhccc
Confidence 9999988888888999999999999998854 56788888999999999998874333 3333333 234678888
Q ss_pred CcccccCCcccCCCCCCCEEEcCCCcCCcc-CCcccCCCCcccEeeeeccccc------ccCccccCCCCCCCeeeccCc
Q 036117 242 NSFEGEIPREIKTFPKLRHLKLGQNKLTGT-IPDEIGLLSNLEILEFHENLFH------GLIPSSLGNLRRLQRLNLKSA 314 (641)
Q Consensus 242 n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~l~~n~~~------~~~~~~l~~l~~L~~L~l~~~ 314 (641)
|.+....+.. .....++.+++.++..... .+..+..+..++...+..+... ......+.....+....+..+
T Consensus 211 n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 211 NPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp CCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred CcccccCccc-ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 8877444433 3344566777777654422 1223445555555544332221 111222333333444443332
Q ss_pred cCCC---CCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCC
Q 036117 315 GLNS---SIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKL 391 (641)
Q Consensus 315 ~~~~---~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L 391 (641)
.... .....+....+++.+++.++.+.... .+.....++.|++.+|.+..+. ...++.|
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~----------------~~~l~~L 351 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFP----------------TLKLKSL 351 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCC----------------CCBCTTC
T ss_pred hhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcC----------------cccchhh
Confidence 2211 12233445566777777776665332 2344566777776665543221 1123445
Q ss_pred CEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCc--cCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCc
Q 036117 392 EYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNG--SIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFL 469 (641)
Q Consensus 392 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L 469 (641)
+.+++..|...... ....+++|+.+++++|.+.. ..+..+..+.+|+++++..+.... .+..+..+. +|
T Consensus 352 ~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~------~L 422 (635)
T 4g8a_A 352 KRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLE------QL 422 (635)
T ss_dssp CEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCT------TC
T ss_pred hhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccc------cc
Confidence 55555555443221 12344555555555555432 223334445555555555554432 222233333 45
Q ss_pred cEEEccCCcccccCC-ccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcC-ccccCcccCCCCCCcEEeCC
Q 036117 470 RNVSFSYNNFSGKLP-PGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRL-DGDITNALGIYPDLQYIDLG 547 (641)
Q Consensus 470 ~~L~ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls 547 (641)
+.++++++......+ ..+..++.++.++++.|.+.+..+..+..+++++.|++++|.+ .+..|..+..+++|++|+|+
T Consensus 423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls 502 (635)
T 4g8a_A 423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502 (635)
T ss_dssp CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence 555555554443322 2344455555555555555555555555555555555555543 22344555555555555555
Q ss_pred CCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCC-CCCCEEeCcCCCCc
Q 036117 548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRLNLRRNQLS 624 (641)
Q Consensus 548 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~-~~L~~l~l~~n~l~ 624 (641)
+|++++..|..|+++++|++|+|++|++++..|..|+++++|++|+|++|++++..|..+..+ ++|+.|++++|+++
T Consensus 503 ~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 555555555555555555555555555555555555555555555555555555555555554 45555555555554
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.7e-45 Score=392.18 Aligned_cols=452 Identities=18% Similarity=0.131 Sum_probs=343.1
Q ss_pred EEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEccc
Q 036117 66 SEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYN 145 (641)
Q Consensus 66 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 145 (641)
+.+++++++++ .+| ..+. ++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip-~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVP-KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCC-CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccc-cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 57899999998 566 4444 8999999999999988888999999999999999999988899999999999999999
Q ss_pred ccCCCCCChhccCCCCCcEEEeccccCCCC-CCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCC--cEEEeeCCcC--C
Q 036117 146 NSLTGQIPHQLSNLQNAWLLRIGANYLEDP-DPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKL--MFLDLSDNLI--M 220 (641)
Q Consensus 146 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L--~~L~l~~~~~--~ 220 (641)
|.++ .+|.. .+++|++|++++|.+.+. .+..+.++++|++|++++|.+.. ..+..+++| ++|++++|.+ .
T Consensus 79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccc
Confidence 9998 45655 899999999999999985 56899999999999999999865 457778888 9999999998 6
Q ss_pred CCCChhhhcCCC-CCcEEeccCCcccccCCc-ccCCCCCCCEEEcCCCc-------CCccCCcccCCCCcccEeeeeccc
Q 036117 221 GHIPIEQLTHLE-NLEYLNLTKNSFEGEIPR-EIKTFPKLRHLKLGQNK-------LTGTIPDEIGLLSNLEILEFHENL 291 (641)
Q Consensus 221 ~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~L~~~~-------l~~~~~~~l~~~~~L~~L~l~~n~ 291 (641)
+..+.. +..+. ....+++++|.+.+.++. .+..+++|+.+++++|. +.+.++ .+..+++|+.|++++|.
T Consensus 154 ~~~~~~-l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 154 KEDPEG-LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp SCCTTT-TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred cccccc-ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence 555533 24443 233677888887765543 56789999999999987 555555 68889999999999998
Q ss_pred ccccCccccC---CCCCCCeeeccCccCCCCCCcCC-----CCCCCCCEEEccCccccccCc-hhhhcC---CCCCeEeC
Q 036117 292 FHGLIPSSLG---NLRRLQRLNLKSAGLNSSIPKEL-----GFCANLTFLELSINNLTGSLP-LSLASL---RQISELGI 359 (641)
Q Consensus 292 ~~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~~-~~l~~~---~~L~~L~l 359 (641)
+.+..+..+. ..++|++|++++|.+.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEE
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEc
Confidence 7754332211 24689999999999988888887 8889999999999988 455 444444 67888887
Q ss_pred CcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCc--cCcccccCCC
Q 036117 360 SNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNG--SIPSTIGNLS 437 (641)
Q Consensus 360 ~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~ 437 (641)
++|.+... .....+++|++|++++|++++..|..+..+++|++|++++|.+.+ .+|..+..++
T Consensus 310 ~~n~l~~~---------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~ 374 (520)
T 2z7x_B 310 SGTRMVHM---------------LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374 (520)
T ss_dssp ESSCCCCC---------------CCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT
T ss_pred CCCccccc---------------cchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC
Confidence 77765432 112467888999999998888788888888888889988888885 4566788888
Q ss_pred CCCEEEccCCcCcccCCcc-hhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCC
Q 036117 438 SLVKLSLSSNQLTGTLPPE-IGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTG 516 (641)
Q Consensus 438 ~L~~L~ls~n~l~~~~~~~-~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 516 (641)
+|++|++++|.+.+.+|.. +..++ +|++|++++|++++.+|..+. ++|+.|++++|++. .+|..+..+++
T Consensus 375 ~L~~L~Ls~N~l~~~l~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~ 445 (520)
T 2z7x_B 375 SLQQLDISQNSVSYDEKKGDCSWTK------SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEA 445 (520)
T ss_dssp TCCEEECCSSCCBCCGGGCSCCCCT------TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred CCCEEECCCCcCCcccccchhccCc------cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCC
Confidence 8888888888887656543 33333 677777777777665555443 56666666666665 55555556666
Q ss_pred CcEEECCCCcCccccCcccCCCCCCcEEeCCCCccccc
Q 036117 517 LTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGV 554 (641)
Q Consensus 517 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 554 (641)
|++|++++|++++..+..+..+++|++|++++|++++.
T Consensus 446 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 446 LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 66666666666532222355566666666666665543
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1e-42 Score=385.63 Aligned_cols=502 Identities=19% Similarity=0.149 Sum_probs=402.4
Q ss_pred CCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEc
Q 036117 112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWL 191 (641)
Q Consensus 112 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 191 (641)
+.+++|||++|.+++..+.+|.++++|++|+|++|++++..+.+|.++++|++|++++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47999999999999777788999999999999999999888889999999999999999999999999999999999999
Q ss_pred CCCCCCCCch-hhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCC----CCEEEcCCC
Q 036117 192 DYNLLEKFPS-FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPK----LRHLKLGQN 266 (641)
Q Consensus 192 ~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~----L~~L~L~~~ 266 (641)
++|.+..++. .++++++|++|++++|.+.+......+..+++|++|++++|.+++..+..+..+.+ ...++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999988876 58999999999999999875433455688999999999999999877777765443 447889999
Q ss_pred cCCccCCcccCCCCcccEeeeeccccccc-CccccCCCCCCCeeeccCccC------CCCCCcCCCCCCCCCEEEccCcc
Q 036117 267 KLTGTIPDEIGLLSNLEILEFHENLFHGL-IPSSLGNLRRLQRLNLKSAGL------NSSIPKELGFCANLTFLELSINN 339 (641)
Q Consensus 267 ~l~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~~~~------~~~~~~~l~~~~~L~~L~l~~n~ 339 (641)
.+....+. ......++.+++.+|..... .+..+..+..++...+..+.. .......+.....+...++..+.
T Consensus 212 ~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 212 PMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred cccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 88854443 44455678888888765432 234566677777666543322 12222334444556666665543
Q ss_pred ccc---cCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCC
Q 036117 340 LTG---SLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLF 416 (641)
Q Consensus 340 l~~---~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 416 (641)
... ..+..+.....++.+.+.++.+..+ ..+.....++.|++.+|.+.+..+ ..++.|+
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---------------~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~ 352 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERV---------------KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLK 352 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEEC---------------GGGGSCCCCSEEEEESCEESSCCC---CBCTTCC
T ss_pred hcccccchhhhhhhhcccccccccccccccc---------------cccccchhhhhhhcccccccCcCc---ccchhhh
Confidence 332 2334455667777777666654433 234456789999999998875543 3467899
Q ss_pred eEecccCcCCccCcccccCCCCCCEEEccCCcCcc--cCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCc
Q 036117 417 DLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTG--TLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLI 494 (641)
Q Consensus 417 ~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~ 494 (641)
.+++.+|..... .....+++|+.+++++|.+.. ..+....... +|+++++..+.... ++..+..++.|+
T Consensus 353 ~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~------~L~~L~~~~~~~~~-~~~~~~~l~~L~ 423 (635)
T 4g8a_A 353 RLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI------SLKYLDLSFNGVIT-MSSNFLGLEQLE 423 (635)
T ss_dssp EEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCS------CCCEEECCSCSEEE-ECSCCTTCTTCC
T ss_pred hcccccccCCCC--cccccccccccchhhccccccccccccchhhhh------hhhhhhcccccccc-cccccccccccc
Confidence 999999987643 234578999999999998853 4455555555 89999999998764 456678899999
Q ss_pred eEeccCCcccCCCc-cccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcc-cccCChhhhcCCCCCEEeCcC
Q 036117 495 YLTANVNKLVGPIP-ESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQL-SGVLTSNWGKCTNLSNFRISG 572 (641)
Q Consensus 495 ~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~-~~~~~~~~~~l~~L~~L~L~~ 572 (641)
.+++..++.....+ ..+..+++++.++++.|.+.+..+..+..++.++.|++++|++ .+..|..+..+++|++|+|++
T Consensus 424 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503 (635)
T ss_dssp EEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred chhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC
Confidence 99999998876555 4578899999999999999999999999999999999999984 456788999999999999999
Q ss_pred CcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCcccccCC-CCCcCCC
Q 036117 573 NRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKL-SRLQYLD 641 (641)
Q Consensus 573 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p~~~~~l-~~L~~l~ 641 (641)
|++++..|..|+++++|++|+|++|++++..|..+..+++|++|++++|++++..|..+..+ ++|+.||
T Consensus 504 N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~ 573 (635)
T 4g8a_A 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 573 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE
T ss_pred CccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE
Confidence 99999999999999999999999999997777888999999999999999999999999988 6788764
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.7e-43 Score=394.44 Aligned_cols=421 Identities=21% Similarity=0.257 Sum_probs=347.7
Q ss_pred CCCCEEEcCCCCC-CCCchhhcCCCCCcEEEe-eCCcCCCCCChhhh---------------------------------
Q 036117 184 ASLTDLWLDYNLL-EKFPSFIAECSKLMFLDL-SDNLIMGHIPIEQL--------------------------------- 228 (641)
Q Consensus 184 ~~L~~L~l~~~~~-~~l~~~l~~~~~L~~L~l-~~~~~~~~~~~~~l--------------------------------- 228 (641)
..++.|+|+++.+ +.+|..++++++|++|++ ++|.+.|..+....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 4688888888888 678888888999999999 77766544221100
Q ss_pred -----------------cCCCCCcEEeccC--CcccccCCcccCCCCCCCEEEcCCCcCCc-----------------cC
Q 036117 229 -----------------THLENLEYLNLTK--NSFEGEIPREIKTFPKLRHLKLGQNKLTG-----------------TI 272 (641)
Q Consensus 229 -----------------~~l~~L~~L~l~~--n~~~~~~~~~l~~l~~L~~L~L~~~~l~~-----------------~~ 272 (641)
.....++.+.+.. |.+++ +|..+.++++|++|++++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 1112233344433 77876 89999999999999999999998 38
Q ss_pred CcccC--CCCcccEeeeecccccccCccccCCCCCCCeeeccCcc-CCC-CCCcCCC-------CCCCCCEEEccCcccc
Q 036117 273 PDEIG--LLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAG-LNS-SIPKELG-------FCANLTFLELSINNLT 341 (641)
Q Consensus 273 ~~~l~--~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~l~-------~~~~L~~L~l~~n~l~ 341 (641)
|..++ .+++|++|++++|.+.+.+|..+.++++|+.|++++|. +.+ .+|..+. .+++|+.|++++|+++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 88887 99999999999999999999999999999999999998 877 6665444 4569999999999999
Q ss_pred ccCch--hhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCC-CCeE
Q 036117 342 GSLPL--SLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTN-LFDL 418 (641)
Q Consensus 342 ~~~~~--~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L 418 (641)
.+|. .+..+++|+.|++++|.++ .+| .++.+++|+.|++++|+++ .+|..+..+++ |+.|
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~--------------~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR--------------HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL 624 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC--------------BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEE
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc--------------cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEE
Confidence 8888 8999999999997777654 345 7888999999999999999 88888999999 9999
Q ss_pred ecccCcCCccCcccccCCCC--CCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCcccc-CCCCCce
Q 036117 419 QLANNFFNGSIPSTIGNLSS--LVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGIC-RGGNLIY 495 (641)
Q Consensus 419 ~l~~n~l~~~~~~~l~~l~~--L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~~~L~~ 495 (641)
++++|.+. .+|..+..++. |++|++++|.+.+.+|....... ....++|+.|++++|.++ .+|..+. .+++|+.
T Consensus 625 ~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~-~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~ 701 (876)
T 4ecn_A 625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD-DYKGINASTVTLSYNEIQ-KFPTELFATGSPIST 701 (876)
T ss_dssp ECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT-TCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSE
T ss_pred ECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc-cccCCCcCEEEccCCcCC-ccCHHHHccCCCCCE
Confidence 99999998 78887777654 99999999999987664322211 112247999999999998 6777665 7899999
Q ss_pred EeccCCcccCCCcccccc--------CCCCcEEECCCCcCccccCcccC--CCCCCcEEeCCCCcccccCChhhhcCCCC
Q 036117 496 LTANVNKLVGPIPESLWN--------CTGLTRVRLEQNRLDGDITNALG--IYPDLQYIDLGDNQLSGVLTSNWGKCTNL 565 (641)
Q Consensus 496 L~l~~n~~~~~~~~~l~~--------~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L 565 (641)
|++++|++. .+|..+.. |++|+.|++++|++. .+|..+. .+++|+.|+|++|++++ +|..+..+++|
T Consensus 702 L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L 778 (876)
T 4ecn_A 702 IILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL 778 (876)
T ss_dssp EECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC
T ss_pred EECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC
Confidence 999999998 66654433 338999999999999 6788876 89999999999999997 78889999999
Q ss_pred CEEeCcC------CcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCcccc
Q 036117 566 SNFRISG------NRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEI 631 (641)
Q Consensus 566 ~~L~L~~------n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p~~~ 631 (641)
+.|+|++ |++.+.+|..+.++++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+..+
T Consensus 779 ~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp CEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred CEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence 9999977 788889999999999999999999999 69998866 699999999999876554444
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.3e-41 Score=367.98 Aligned_cols=457 Identities=21% Similarity=0.221 Sum_probs=296.5
Q ss_pred CCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEE
Q 036117 87 FPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLR 166 (641)
Q Consensus 87 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 166 (641)
+...++++++++++++ +|..+. ++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 3445899999999984 676554 8899999999999987778899999999999999999988888999999999999
Q ss_pred eccccCCCCCCcccCCCCCCCEEEcCCCCCCCC--chhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCC--cEEeccCC
Q 036117 167 IGANYLEDPDPVKFKGMASLTDLWLDYNLLEKF--PSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENL--EYLNLTKN 242 (641)
Q Consensus 167 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~n 242 (641)
+++|.++.++.. .+++|++|++++|.+..+ |..+.++++|++|++++|.+.+. . +..+++| ++|++++|
T Consensus 107 Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~---~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 107 VSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-D---LLPVAHLHLSCILLDLV 179 (562)
T ss_dssp CTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-T---TGGGTTSCEEEEEEEES
T ss_pred CCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-c---hhhhhhceeeEEEeecc
Confidence 999998865544 788899999999988665 46788888888888888887642 2 2344444 88888888
Q ss_pred cc--cccCCcccCCCC-CCCEEEcCCCcCCccCCc-ccCCCCcccEeeeeccccc----ccCccccCCCCCCCeeeccCc
Q 036117 243 SF--EGEIPREIKTFP-KLRHLKLGQNKLTGTIPD-EIGLLSNLEILEFHENLFH----GLIPSSLGNLRRLQRLNLKSA 314 (641)
Q Consensus 243 ~~--~~~~~~~l~~l~-~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~l~~n~~~----~~~~~~l~~l~~L~~L~l~~~ 314 (641)
.+ ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|... ......+..++
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~---------- 249 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP---------- 249 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS----------
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC----------
Confidence 77 666666665543 111445666666554433 2345666666666665311 00111233333
Q ss_pred cCCCCCCcCCCCCCCCCEEEccCccccccCchh---hhcCCCCCeEeCCcccccccceeecccccccccCCcCC-----C
Q 036117 315 GLNSSIPKELGFCANLTFLELSINNLTGSLPLS---LASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI-----G 386 (641)
Q Consensus 315 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~---l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l-----~ 386 (641)
+|+.++++++.+.+..... ....++|++|+ +++|.+.|.+|..+ .
T Consensus 250 --------------~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~-------------l~~n~l~~~ip~~~~~~~~~ 302 (562)
T 3a79_B 250 --------------TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN-------------IYNLTITERIDREEFTYSET 302 (562)
T ss_dssp --------------SCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE-------------EEEEEECSCCCCCCCCCCSC
T ss_pred --------------cceEEEecCCcCcHHHHHHHHHhhhcccccEEE-------------EeccEeeccccchhhhcccc
Confidence 4444444444333211110 01112333333 44444444455444 4
Q ss_pred CCCCCCEEEccCCcCcCCch-hhhh---CCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCC
Q 036117 387 LLPKLEYLYLFDNKFSGPIP-QQIG---NLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKS 462 (641)
Q Consensus 387 ~~~~L~~L~L~~n~l~~~~~-~~~~---~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 462 (641)
.++.|+.+++..+.+ .+| .++. ...+|+.|++++|.+.... ....+++|++|++++|.+++.+|..+..++
T Consensus 303 ~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~- 377 (562)
T 3a79_B 303 ALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLK- 377 (562)
T ss_dssp SCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCS-
T ss_pred cchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccC-
Confidence 445555555555555 222 2222 2256777777777765221 124667777777777777766666666665
Q ss_pred CCCCCCccEEEccCCcccc--cCCccccCCCCCceEeccCCcccCCCcc-ccccCCCCcEEECCCCcCccccCcccCCCC
Q 036117 463 DFGPRFLRNVSFSYNNFSG--KLPPGICRGGNLIYLTANVNKLVGPIPE-SLWNCTGLTRVRLEQNRLDGDITNALGIYP 539 (641)
Q Consensus 463 ~~~~~~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 539 (641)
+|++|++++|++++ .+|..+..+++|+.|++++|++.+.+|. .+..+++|++|++++|++++..+..+. +
T Consensus 378 -----~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~ 450 (562)
T 3a79_B 378 -----RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P 450 (562)
T ss_dssp -----SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T
T ss_pred -----CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C
Confidence 67777777777764 2344566777777777777777764543 466677777777777777766655443 6
Q ss_pred CCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCcc-ccCCCCCCEEeCCCCcCcccCC
Q 036117 540 DLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAE-LGNLTYLQNLDIFDNQLTGKIP 604 (641)
Q Consensus 540 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~ip 604 (641)
+|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++.+..|
T Consensus 451 ~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 7777777777777 45555557777777777777777 45544 7777777777777777776544
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.6e-41 Score=367.52 Aligned_cols=453 Identities=19% Similarity=0.150 Sum_probs=320.3
Q ss_pred EEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcc
Q 036117 65 ISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLY 144 (641)
Q Consensus 65 v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 144 (641)
.+.++++++++++ +| ..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|+++
T Consensus 33 ~~~l~ls~~~L~~-ip-~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VP-KDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCCS-CC-TTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCcc-CC-CCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 3889999999984 66 3343 899999999999998888899999999999999999998889999999999999999
Q ss_pred cccCCCCCChhccCCCCCcEEEeccccCCCCC-CcccCCCCCCCEEEcCCCCCCCCchhhcCCCCC--cEEEeeCCcC--
Q 036117 145 NNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD-PVKFKGMASLTDLWLDYNLLEKFPSFIAECSKL--MFLDLSDNLI-- 219 (641)
Q Consensus 145 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L--~~L~l~~~~~-- 219 (641)
+|.++ .+|.. .+++|++|++++|.+.+.. +..|.++++|++|++++|.+... .+..+++| ++|++++|.+
T Consensus 109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp TSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCC
T ss_pred CCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccc
Confidence 99998 45655 8999999999999999865 57899999999999999998653 35555666 9999999998
Q ss_pred CCCCChhhhcCCC-CCcEEeccCCcccccCCc-ccCCCCCCCEEEcCCCcCC----ccCCcccCCCCcccEeeeeccccc
Q 036117 220 MGHIPIEQLTHLE-NLEYLNLTKNSFEGEIPR-EIKTFPKLRHLKLGQNKLT----GTIPDEIGLLSNLEILEFHENLFH 293 (641)
Q Consensus 220 ~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~L~~~~l~----~~~~~~l~~~~~L~~L~l~~n~~~ 293 (641)
.+..+.. +..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|... ......+..++.++.+++.++.+.
T Consensus 184 ~~~~~~~-l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 184 KGGETES-LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CSSSCCE-EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred cccCccc-ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence 6555533 34433 122567788887765543 4567889999999998521 012234677889999998888765
Q ss_pred ccC----ccccCCCCCCCeeeccCccCCCCCCcCC-----CCCCCCCEEEccCccccccCc-hhhh---cCCCCCeEeCC
Q 036117 294 GLI----PSSLGNLRRLQRLNLKSAGLNSSIPKEL-----GFCANLTFLELSINNLTGSLP-LSLA---SLRQISELGIS 360 (641)
Q Consensus 294 ~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~~-~~l~---~~~~L~~L~l~ 360 (641)
+.. +..+ ..++|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ .+| ..+. ...+++.|+++
T Consensus 263 ~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 263 WKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp HHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEE
T ss_pred HHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEcc
Confidence 432 1122 23589999999999887777766 5555666666666655 334 2222 23567778776
Q ss_pred cccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCc--cCcccccCCCC
Q 036117 361 NNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNG--SIPSTIGNLSS 438 (641)
Q Consensus 361 ~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~ 438 (641)
+|.+... .....+++|++|++++|++++..|..+..+++|++|++++|.+++ .+|..+..+++
T Consensus 340 ~n~~~~~---------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 404 (562)
T 3a79_B 340 DTPFIHM---------------VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS 404 (562)
T ss_dssp SSCCCCC---------------CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT
T ss_pred CCCcccc---------------cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC
Confidence 6665432 112467788888888888887778888888888888888888875 33456777888
Q ss_pred CCEEEccCCcCcccCCcc-hhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCC
Q 036117 439 LVKLSLSSNQLTGTLPPE-IGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGL 517 (641)
Q Consensus 439 L~~L~ls~n~l~~~~~~~-~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 517 (641)
|++|++++|.+++.+|.. +..+. +|++|++++|++++.+|..+. +.|+.|++++|++. .+|..+..+++|
T Consensus 405 L~~L~l~~N~l~~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L 475 (562)
T 3a79_B 405 LETLDVSLNSLNSHAYDRTCAWAE------SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL 475 (562)
T ss_dssp CCEEECTTSCCBSCCSSCCCCCCT------TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCC
T ss_pred CCEEECCCCcCCCccChhhhcCcc------cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCC
Confidence 888888888877655543 33333 677777777776655544332 45666666666555 444444455555
Q ss_pred cEEECCCCcCccccCcccCCCCCCcEEeCCCCccccc
Q 036117 518 TRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGV 554 (641)
Q Consensus 518 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 554 (641)
++|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus 476 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 476 QELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 5555555555532222255555555555555555543
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.4e-40 Score=345.10 Aligned_cols=423 Identities=22% Similarity=0.243 Sum_probs=170.7
Q ss_pred CCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEc
Q 036117 112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWL 191 (641)
Q Consensus 112 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 191 (641)
++|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++++++|+.+++.+|.. .++++|++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l 78 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL 78 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence 4444455554444 34444455555555555555554444454444444443333322211 22333333
Q ss_pred CCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCcc
Q 036117 192 DYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGT 271 (641)
Q Consensus 192 ~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~ 271 (641)
++|.+..+|.. .++|++|++++|.+.+ ++. ..++|++|++++|.+++ ++.. .++|++|++++|.+++
T Consensus 79 ~~~~l~~lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~- 145 (454)
T 1jl5_A 79 NNLGLSSLPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK- 145 (454)
T ss_dssp TTSCCSCCCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-
T ss_pred cCCccccCCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-
Confidence 33333333321 1344444444444442 221 12344444444444432 1110 1344555555554443
Q ss_pred CCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcC
Q 036117 272 IPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASL 351 (641)
Q Consensus 272 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~ 351 (641)
+| .++.+++|++|++++|++.+ +|.. .++|++|++++|.+.+ +| .+..+++|++|++++|++++ +|.. .
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~ 214 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---P 214 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---C
T ss_pred Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---c
Confidence 33 24445555555555554443 2221 1345555555555544 22 34555555555555555553 2221 1
Q ss_pred CCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcc
Q 036117 352 RQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPS 431 (641)
Q Consensus 352 ~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 431 (641)
++|++|++++|.++. +| .++.+++|++|++++|++++ +|. .+++|+.|++++|.+.+ +|.
T Consensus 215 ~~L~~L~l~~n~l~~--------------lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~ 274 (454)
T 1jl5_A 215 LSLESIVAGNNILEE--------------LP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPE 274 (454)
T ss_dssp TTCCEEECCSSCCSS--------------CC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCC
T ss_pred CcccEEECcCCcCCc--------------cc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCc
Confidence 345555544443321 22 24555666666666666653 222 13566666666666653 333
Q ss_pred cccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCC-CCCceEeccCCcccCCCccc
Q 036117 432 TIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG-GNLIYLTANVNKLVGPIPES 510 (641)
Q Consensus 432 ~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~ 510 (641)
. .++|++|++++|.+++. |.. +++|++|++++|++++ ++ .. ++|+.|++++|++.+ +|..
T Consensus 275 ~---~~~L~~L~ls~N~l~~l-~~~---------~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~ 335 (454)
T 1jl5_A 275 L---PQSLTFLDVSENIFSGL-SEL---------PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL 335 (454)
T ss_dssp C---CTTCCEEECCSSCCSEE-SCC---------CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC
T ss_pred c---cCcCCEEECcCCccCcc-cCc---------CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc
Confidence 2 25666677766666541 110 0156777777776653 11 22 467777777777664 4443
Q ss_pred cccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccc--cCChhhhcCCCCCEEeCcCCcCcccCCccccCCCC
Q 036117 511 LWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSG--VLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTY 588 (641)
Q Consensus 511 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 588 (641)
+++|++|++++|++.+ +|. .+++|++|++++|++++ .+|..++. | +.|.+.+.+|.. +++
T Consensus 336 ---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~------L--~~n~~~~~i~~~---~~~ 397 (454)
T 1jl5_A 336 ---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED------L--RMNSHLAEVPEL---PQN 397 (454)
T ss_dssp ---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE------E--ECCC--------------
T ss_pred ---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh------h--hhcccccccccc---cCc
Confidence 4677777777777773 444 36778888888887776 55554432 2 345566666653 477
Q ss_pred CCEEeCCCCcCcc--cCCccccCCCCCCEEeCcCCCCcccCcccccC
Q 036117 589 LQNLDIFDNQLTG--KIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGK 633 (641)
Q Consensus 589 L~~L~L~~n~l~~--~ip~~l~~~~~L~~l~l~~n~l~~~~p~~~~~ 633 (641)
|++|++++|++++ .+|.+ ++.|.+.+|.+.+.+|.....
T Consensus 398 L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 398 LKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp -----------------------------------------------
T ss_pred CCEEECCCCcCCccccchhh------HhheeCcCcccCCccccCHHH
Confidence 8888999998886 56643 566778888888777755443
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.1e-39 Score=342.53 Aligned_cols=390 Identities=19% Similarity=0.208 Sum_probs=245.7
Q ss_pred EEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccC-CcccCCCCCCCEEEcCCC
Q 036117 188 DLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEI-PREIKTFPKLRHLKLGQN 266 (641)
Q Consensus 188 ~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~L~~~ 266 (641)
.++.+++.+..+|. + .++|++|++++|.+.+ ++...+.++++|++|++++|.+.+.+ +..|..+++|++|++++|
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCSSCCCE-ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecCCccCc-CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 34444444444444 1 1455555555555542 22233355555555555555554332 344555566666666666
Q ss_pred cCCccCCcccCCCCcccEeeeecccccccCccc--cCCCCCCCeeeccCccCCCCCCcC-CCCCCCCCEEEccCcccccc
Q 036117 267 KLTGTIPDEIGLLSNLEILEFHENLFHGLIPSS--LGNLRRLQRLNLKSAGLNSSIPKE-LGFCANLTFLELSINNLTGS 343 (641)
Q Consensus 267 ~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~l~~~ 343 (641)
.+.+..|..++.+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|++.+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 655555555555666666666666555433332 555666666666666665554443 55666666666666666665
Q ss_pred CchhhhcC--CCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCC---CCCCeE
Q 036117 344 LPLSLASL--RQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNL---TNLFDL 418 (641)
Q Consensus 344 ~~~~l~~~--~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L 418 (641)
.+..+..+ ..++.|++++|.+..+....+.. .....+..+++|++|++++|++++..|..+... ++|+.|
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L 244 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW-----EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH-----HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred ChhhhhccccccccccccccCcccccchhhccc-----cccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence 55555544 45556665555544331111100 001123345678888888888877777666543 677777
Q ss_pred ecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEec
Q 036117 419 QLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTA 498 (641)
Q Consensus 419 ~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l 498 (641)
++++|...+... ..+.+.+..+..+..+. .++|++|++++|.+++..|..+..+++|+.|++
T Consensus 245 ~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 306 (455)
T 3v47_A 245 ILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLE----ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306 (455)
T ss_dssp ECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGT----TSCCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred eecccccccccc--------------chhhhccCccccccccc----ccCceEEEecCccccccchhhcccCCCCCEEEC
Confidence 777776553211 11111111111111110 126888888888888777888888888888888
Q ss_pred cCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCccc
Q 036117 499 NVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGG 578 (641)
Q Consensus 499 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 578 (641)
++|++.+..|..+.++++|++|++++|.+.+..+..++.+++|++|++++|++++..|..+..+++|++|++++|++++.
T Consensus 307 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC
Confidence 88888877777888888888888888888877778888888888888888888888888888888888888888888866
Q ss_pred CCccccCCCCCCEEeCCCCcCcccCC
Q 036117 579 IPAELGNLTYLQNLDIFDNQLTGKIP 604 (641)
Q Consensus 579 ~p~~l~~l~~L~~L~L~~n~l~~~ip 604 (641)
.+..++.+++|++|++++|++++.+|
T Consensus 387 ~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 387 PDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CHhHhccCCcccEEEccCCCcccCCC
Confidence 66677888888888888888888777
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.3e-39 Score=340.71 Aligned_cols=381 Identities=19% Similarity=0.182 Sum_probs=260.4
Q ss_pred cEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccC-CcccCCCCcccEeeee
Q 036117 210 MFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTI-PDEIGLLSNLEILEFH 288 (641)
Q Consensus 210 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~-~~~l~~~~~L~~L~l~ 288 (641)
+.++.+++.++ .+|. -.+++++|++++|.+++..|..+..+++|++|++++|.+.+.+ +..+..+++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 34555666555 4443 2256777777777777666666777777777777777665433 3456667777777777
Q ss_pred cccccccCccccCCCCCCCeeeccCccCCCCCCcC--CCCCCCCCEEEccCccccccCchh-hhcCCCCCeEeCCccccc
Q 036117 289 ENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKE--LGFCANLTFLELSINNLTGSLPLS-LASLRQISELGISNNQLS 365 (641)
Q Consensus 289 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--l~~~~~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~l~~n~~~ 365 (641)
+|.+.+..|..+..+++|++|++++|.+.+..+.. +..+++|++|++++|++++..|.. +..+++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 77776666666666777777777777665533332 566666666776666666555544 556666666664444433
Q ss_pred ccceeecccccccccCCcCCCCC--CCCCEEEccCCcCcCCchhhh--------hCCCCCCeEecccCcCCccCcccccC
Q 036117 366 EIISLQLQMNDLSGKLPPEIGLL--PKLEYLYLFDNKFSGPIPQQI--------GNLTNLFDLQLANNFFNGSIPSTIGN 435 (641)
Q Consensus 366 ~l~~l~l~~~~l~~~~~~~l~~~--~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~l~~n~l~~~~~~~l~~ 435 (641)
. ..+..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..+..+..
T Consensus 168 ~-------------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 168 S-------------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp C-------------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred c-------------cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 2 223333322 455666666665554333221 13345555555555555444433322
Q ss_pred C---CCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCcccc--CCCCCceEeccCCcccCCCccc
Q 036117 436 L---SSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGIC--RGGNLIYLTANVNKLVGPIPES 510 (641)
Q Consensus 436 l---~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~ 510 (641)
. ++|+.+++++|...+.... .+.+.+..+..+. ..++|+.|++++|++.+..|..
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 294 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFG--------------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV 294 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTT--------------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT
T ss_pred cccccceeeEeeccccccccccc--------------------hhhhccCcccccccccccCceEEEecCccccccchhh
Confidence 2 4455555555443322100 0011111111122 2468999999999999999999
Q ss_pred cccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCC
Q 036117 511 LWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQ 590 (641)
Q Consensus 511 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 590 (641)
+..+++|++|++++|++.+..+..++.+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+.++++|+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 99999999999999999998899999999999999999999999899999999999999999999988899999999999
Q ss_pred EEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCc
Q 036117 591 NLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIP 628 (641)
Q Consensus 591 ~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p 628 (641)
+|++++|++++..+..+..+++|+.|++++|++++.+|
T Consensus 375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999999996445566889999999999999999888
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.8e-39 Score=338.67 Aligned_cols=426 Identities=24% Similarity=0.289 Sum_probs=227.6
Q ss_pred CCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEE
Q 036117 86 AFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLL 165 (641)
Q Consensus 86 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 165 (641)
..++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++.+++|+++++.+|.. .++++|
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 457899999999999 68999999999999999999999989999999888875555554431 345556
Q ss_pred EeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccc
Q 036117 166 RIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFE 245 (641)
Q Consensus 166 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 245 (641)
++++|.+++.+. -.++|++|++++|.+..+|.. .++|++|++++|.+.+ ++. ..++|++|++++|.++
T Consensus 77 ~l~~~~l~~lp~----~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 77 ELNNLGLSSLPE----LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLE 144 (454)
T ss_dssp ECTTSCCSCCCS----CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCS
T ss_pred EecCCccccCCC----CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCC
Confidence 666665554332 124566666666666555542 3566666666666652 221 1256777777777766
Q ss_pred ccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCC
Q 036117 246 GEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELG 325 (641)
Q Consensus 246 ~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 325 (641)
+ +| .+..+++|++|++++|.+++ +|.. .++|++|++++|.+.+ +| .+..+++|++|++++|.+.+ +|..
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-- 213 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-- 213 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC--
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC--
Confidence 4 55 46677777777777777663 4432 2467777777777765 33 46677777777777777654 2222
Q ss_pred CCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCc
Q 036117 326 FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPI 405 (641)
Q Consensus 326 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~ 405 (641)
.++|++|++++|.+. .+| .+..+++|++|++++|+++.+ |. .+++|++|++++|++++ +
T Consensus 214 -~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l--------------~~---~~~~L~~L~l~~N~l~~-l 272 (454)
T 1jl5_A 214 -PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL--------------PD---LPPSLEALNVRDNYLTD-L 272 (454)
T ss_dssp -CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC--------------CS---CCTTCCEEECCSSCCSC-C
T ss_pred -cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc--------------cc---cccccCEEECCCCcccc-c
Confidence 247777777777777 555 366777777777666655432 22 13677888888887775 3
Q ss_pred hhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCc
Q 036117 406 PQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPP 485 (641)
Q Consensus 406 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 485 (641)
|.. +++|+.|++++|.+++ ++.. .++|++|++++|.+++ ++ .. +++|++|++++|++++ +|.
T Consensus 273 ~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~-----~~~L~~L~Ls~N~l~~-lp~ 334 (454)
T 1jl5_A 273 PEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DL-----PPSLEELNVSNNKLIE-LPA 334 (454)
T ss_dssp CCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CC-----CTTCCEEECCSSCCSC-CCC
T ss_pred Ccc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CC-----cCcCCEEECCCCcccc-ccc
Confidence 332 3678888888888775 2211 2578888888887764 22 11 1268888888888874 554
Q ss_pred cccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCcc--ccCcccCCCCCCcEEeCCCCcccccCChhhhcCC
Q 036117 486 GICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDG--DITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCT 563 (641)
Q Consensus 486 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~ 563 (641)
. +++|+.|++++|++. .+|. .+++|++|++++|++.+ .+|..++ . ++.|.+.+.+|.. ++
T Consensus 335 ~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~------~--L~~n~~~~~i~~~---~~ 396 (454)
T 1jl5_A 335 L---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVE------D--LRMNSHLAEVPEL---PQ 396 (454)
T ss_dssp C---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC------E--EECCC-------------
T ss_pred c---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHH------h--hhhcccccccccc---cC
Confidence 3 478888888888887 4565 46788889998888887 5555433 2 2346666666653 56
Q ss_pred CCCEEeCcCCcCcc--cCCccccCCCCCCEEeCCCCcCcccCCccccC
Q 036117 564 NLSNFRISGNRIKG--GIPAELGNLTYLQNLDIFDNQLTGKIPAQLFR 609 (641)
Q Consensus 564 ~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~ 609 (641)
+|++|++++|++++ .+|. +++.|++.+|.+.+.+|.....
T Consensus 397 ~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 397 NLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp ------------------------------------------------
T ss_pred cCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHHH
Confidence 78888999998886 5553 4666778888888776655443
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8e-39 Score=320.37 Aligned_cols=290 Identities=26% Similarity=0.443 Sum_probs=196.1
Q ss_pred cCcHHHHHHHHHHHhcCCCCC-CCCCCCCCCCCCCcc--ccceeeCCC---CCEEEEEcCCCCCcc--ccCCcCCCCCCC
Q 036117 18 ISAQKEAKALLNWKSSLVSSS-LPSWTAINSNSGPCN--WNGIQCNEV---GSISEINLANSGLDG--TLDGFDFSAFPN 89 (641)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~-~~~W~~~~~~~~~c~--~~gv~c~~~---~~v~~l~l~~~~~~~--~~~~~~~~~l~~ 89 (641)
.|.++|+.||++||+++..+. +.+|... .+||. |.||.|+.. ++|++|+++++.+.+ .++ ..+.++++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~---~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~-~~l~~l~~ 77 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SSLANLPY 77 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTT---SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC-GGGGGCTT
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCC---CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccC-hhHhCCCC
Confidence 588999999999999996544 7889754 68998 999999864 789999999998887 677 67888888
Q ss_pred CCEEECCC-CCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEec
Q 036117 90 LTALNLNM-NNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIG 168 (641)
Q Consensus 90 L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 168 (641)
|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 88888885 77877788888888888888888888877778788888888888888888877777777777777777777
Q ss_pred cccCCCCCCcccCCCC-CCCEEEcCCCCCC-CCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccc
Q 036117 169 ANYLEDPDPVKFKGMA-SLTDLWLDYNLLE-KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEG 246 (641)
Q Consensus 169 ~n~~~~~~~~~l~~l~-~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 246 (641)
+|.+++..+..+..++ +|++|++++|.+. .+|..+..++ |++|++++|.+++
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--------------------------L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--------------------------LAFVDLSRNMLEG 211 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--------------------------CSEEECCSSEEEE
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc--------------------------ccEEECcCCcccC
Confidence 7777655555555554 5555555555442 3444444443 5555555555554
Q ss_pred cCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCC
Q 036117 247 EIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGF 326 (641)
Q Consensus 247 ~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 326 (641)
..+..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.. ..
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~ 289 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence 4455555555555555555555433333 444555555555555555555555555555555555555555554443 45
Q ss_pred CCCCCEEEccCcc
Q 036117 327 CANLTFLELSINN 339 (641)
Q Consensus 327 ~~~L~~L~l~~n~ 339 (641)
+++|+.+++++|+
T Consensus 290 l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 290 LQRFDVSAYANNK 302 (313)
T ss_dssp GGGSCGGGTCSSS
T ss_pred ccccChHHhcCCC
Confidence 5555555555554
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.3e-36 Score=319.69 Aligned_cols=415 Identities=19% Similarity=0.216 Sum_probs=236.8
Q ss_pred cCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCC
Q 036117 103 SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKG 182 (641)
Q Consensus 103 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 182 (641)
..+..++++++|++|++++|.+++. | .++.+++|++|++++|.+++. | +..+++|++|++++|.+++.. +..
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~---~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD---VTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred ccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee---cCC
Confidence 4445677888888888888888854 5 678888888888888888764 3 777888888888888877652 667
Q ss_pred CCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEE
Q 036117 183 MASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLK 262 (641)
Q Consensus 183 l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 262 (641)
+++|++|++++|.+..++ +..+++|++|++++|.+.+ ++ ++.+++|++|++++|...+.+ .+..+++|++|+
T Consensus 105 l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp CTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred CCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 777777777777776665 6677777777777777664 32 356666677777666443333 355566666666
Q ss_pred cCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccc
Q 036117 263 LGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTG 342 (641)
Q Consensus 263 L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 342 (641)
+++|.+++ +| +..+++|+.|++++|.+++. .+..+++|++|++++|.+.+ +| +..+++|+.|++++|++++
T Consensus 177 ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 177 CSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred CCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 66666654 22 45555666666666655543 24445555555555555544 22 4444555555555555543
Q ss_pred cCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEeccc
Q 036117 343 SLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLAN 422 (641)
Q Consensus 343 ~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 422 (641)
.. +.. +++|+.|++++| +|+.+++++
T Consensus 248 ~~---~~~-------------------------------------l~~L~~L~l~~n--------------~L~~L~l~~ 273 (457)
T 3bz5_A 248 LD---VST-------------------------------------LSKLTTLHCIQT--------------DLLEIDLTH 273 (457)
T ss_dssp CC---CTT-------------------------------------CTTCCEEECTTC--------------CCSCCCCTT
T ss_pred cC---HHH-------------------------------------CCCCCEEeccCC--------------CCCEEECCC
Confidence 21 223 344444444332 233444444
Q ss_pred CcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCc
Q 036117 423 NFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNK 502 (641)
Q Consensus 423 n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 502 (641)
|.+.+.+| +..+++|+.|++++|...+.+|... . +|+.|++++| ++|+.|++++|+
T Consensus 274 n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~---~------~L~~L~l~~~-------------~~L~~L~L~~N~ 329 (457)
T 3bz5_A 274 NTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQA---A------GITELDLSQN-------------PKLVYLYLNNTE 329 (457)
T ss_dssp CTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTT---C------CCSCCCCTTC-------------TTCCEEECTTCC
T ss_pred CccCCccc--ccccccCCEEECCCCcccceeccCC---C------cceEechhhc-------------ccCCEEECCCCc
Confidence 44444433 2344555555555555444443211 1 3444433332 355666666666
Q ss_pred ccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCcc
Q 036117 503 LVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAE 582 (641)
Q Consensus 503 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 582 (641)
+.+. + +.++++|+.|++++|++.+ ++.|+.|++++|.+.|. +.+..|+.+++++|+++|.+|..
T Consensus 330 l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 330 LTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred cccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 6552 2 5666677777777776664 24566666777776655 34556677777777777777755
Q ss_pred ccC-CCCCCEEeCCCCcCcccCCc-----ccc-CC-CCCCEEeCcCCCCcccCcccccCCCC
Q 036117 583 LGN-LTYLQNLDIFDNQLTGKIPA-----QLF-RS-SFLIRLNLRRNQLSDKIPAEIGKLSR 636 (641)
Q Consensus 583 l~~-l~~L~~L~L~~n~l~~~ip~-----~l~-~~-~~L~~l~l~~n~l~~~~p~~~~~l~~ 636 (641)
+.. ...+....-..+........ ++. .. .-+.....++|.++|.|++.+.....
T Consensus 394 ~~~~~~~~~~~~~~~~~~y~~~~~~i~~k~~~~~~~~~~y~~~~~~~~fsG~i~~p~~~~~~ 455 (457)
T 3bz5_A 394 LLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFEAPQP 455 (457)
T ss_dssp CBCTTSCCCEEEESSSEEEETTTTEEEESSCCTTSCEECEEEECTTSSEEEEEEEEBC----
T ss_pred HhcccCceeeccCCCCccccCCCCeeEEEeccCCCceEEEEEecCCcEEeeEeccccccccc
Confidence 432 23333333333222211100 000 01 12233344578999999988766543
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9.5e-37 Score=320.71 Aligned_cols=356 Identities=17% Similarity=0.170 Sum_probs=178.9
Q ss_pred CCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhh
Q 036117 149 TGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQL 228 (641)
Q Consensus 149 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 228 (641)
.+..+..++++++|++|++++|.+++.+ .+..+++|++|++++|.+..+| +..+++|++|++++|.+.+ ++ +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~---~ 102 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD---V 102 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC---C
T ss_pred CcccccChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee---c
Confidence 3344455666777777777777766552 4666666666666666665554 5566666666666666653 22 3
Q ss_pred cCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCe
Q 036117 229 THLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQR 308 (641)
Q Consensus 229 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 308 (641)
+++++|++|++++|.+++ ++ +..+++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++|++
T Consensus 103 ~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 556666666666666553 22 55556666666666655542 1445555555555555333332 2344444444
Q ss_pred eeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCC
Q 036117 309 LNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLL 388 (641)
Q Consensus 309 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~ 388 (641)
|++++|.+.+. + +..+++|+.|++++|++++. . ++.+
T Consensus 175 L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~-------------------------------------l~~l 211 (457)
T 3bz5_A 175 LDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---D-------------------------------------LNQN 211 (457)
T ss_dssp EECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---C-------------------------------------CTTC
T ss_pred EECCCCcccee-c--cccCCCCCEEECcCCcCCee---c-------------------------------------cccC
Confidence 44444444332 1 33444444444444444432 1 3344
Q ss_pred CCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCC
Q 036117 389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRF 468 (641)
Q Consensus 389 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~ 468 (641)
++|++|++++|++++ +| +..+++|+.|++++|.+++.. ...+++|+.|++++| +
T Consensus 212 ~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------------~ 265 (457)
T 3bz5_A 212 IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------------D 265 (457)
T ss_dssp TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------------C
T ss_pred CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------------C
Confidence 555555555555554 23 445555555555555555321 233445555554433 2
Q ss_pred ccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccc--------cccCCCCcEEECCCCcCccccCcccCCCCC
Q 036117 469 LRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPES--------LWNCTGLTRVRLEQNRLDGDITNALGIYPD 540 (641)
Q Consensus 469 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--------l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 540 (641)
|+.|++++|.+.+.+| +..++.|+.|++++|...+.+|.. +..+++|++|++++|++++. .++.+++
T Consensus 266 L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~ 340 (457)
T 3bz5_A 266 LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTK 340 (457)
T ss_dssp CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTT
T ss_pred CCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCc
Confidence 3344445554444443 234455555555555544444421 12224455555555555542 1444555
Q ss_pred CcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccc
Q 036117 541 LQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQL 607 (641)
Q Consensus 541 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l 607 (641)
|+.|++++|++++ ++.|..|++++|.+.|. .++.+|+.+++++|+++|.||..+
T Consensus 341 L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 341 LKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred CcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 5555555555443 12334444555555443 123344455555555555555443
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.2e-35 Score=315.06 Aligned_cols=343 Identities=30% Similarity=0.461 Sum_probs=178.6
Q ss_pred CCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEE
Q 036117 63 GSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLL 142 (641)
Q Consensus 63 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 142 (641)
.+++.++++++.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ ++.+++|++|+
T Consensus 46 ~~l~~L~l~~~~i~~-l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSCCCC-CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred ccccEEecCCCCCcc-Cc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 456666666666553 22 35666777777777776664432 6667777777777776664433 66677777777
Q ss_pred cccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCC
Q 036117 143 LYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGH 222 (641)
Q Consensus 143 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~ 222 (641)
+++|.+++..+ +.++++|++|++++|.+.+.. .+..+++|++|+++ +.+..++. +.++++|++|++++|.+.+
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~- 191 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSD- 191 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCC-
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCC-
Confidence 77766664322 666666777777666665532 35566666666664 33333332 5556666666666665542
Q ss_pred CChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCC
Q 036117 223 IPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGN 302 (641)
Q Consensus 223 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~ 302 (641)
++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..
T Consensus 192 ~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 192 IS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp CG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred Ch--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 22 23555566666666665554332 44455555666655555432 234455555555555555554332 444
Q ss_pred CCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCC
Q 036117 303 LRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLP 382 (641)
Q Consensus 303 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~ 382 (641)
+++|++|++++|.+.+..+ +..+++|++|++++|++.+..+ +..+++|+.|++++|+++.+ .|
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-------------~~ 326 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI-------------SP 326 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC-------------GG
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc-------------hh
Confidence 5555555555555543322 4444555555555555543222 34444444444443333221 11
Q ss_pred cCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCc
Q 036117 383 PEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLT 450 (641)
Q Consensus 383 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 450 (641)
+..+++|++|++++|++++. ..+..+++|+.|++++|.+.+..| +..+++|++|++++|.++
T Consensus 327 --~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 327 --VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp --GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred --hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 23344444444444444432 234444444444444444443333 444444444444444443
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.6e-35 Score=314.14 Aligned_cols=346 Identities=29% Similarity=0.375 Sum_probs=270.9
Q ss_pred CCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccE
Q 036117 205 ECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEI 284 (641)
Q Consensus 205 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 284 (641)
.+++++.|++.++.+. .++. +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|++
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 4568899999999887 4552 5778999999999999885443 8889999999999999885544 888999999
Q ss_pred eeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccc
Q 036117 285 LEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQL 364 (641)
Q Consensus 285 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~ 364 (641)
|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|+++ +.+.+.. .+..+++|+.|++++|.+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence 9999998886643 78889999999999888653 247888899999986 4554332 377888888888888776
Q ss_pred cccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEc
Q 036117 365 SEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSL 444 (641)
Q Consensus 365 ~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 444 (641)
..+ +.+..+++|++|++++|.+.+..+ ++.+++|+.|++++|.+.+ + ..+..+++|++|++
T Consensus 190 ~~~---------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 190 SDI---------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDL 250 (466)
T ss_dssp CCC---------------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred CCC---------------hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEEC
Confidence 543 235667889999999998887655 6678889999999988874 3 35778888999999
Q ss_pred cCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCC
Q 036117 445 SSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQ 524 (641)
Q Consensus 445 s~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 524 (641)
++|.+.+..+ +..++ +|++|++++|.+++..+ +..+++|+.|++++|++.+..+ +..+++|+.|++++
T Consensus 251 ~~n~l~~~~~--~~~l~------~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 251 ANNQISNLAP--LSGLT------KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 318 (466)
T ss_dssp CSSCCCCCGG--GTTCT------TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCS
T ss_pred CCCccccchh--hhcCC------CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcC
Confidence 9888875433 55555 78888888888875333 7778888888888888876443 67888888888888
Q ss_pred CcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcc
Q 036117 525 NRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG 601 (641)
Q Consensus 525 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 601 (641)
|++.+..+ ++.+++|+.|++++|++++. ..+..+++|++|++++|++++..| +..+++|++|++++|.+++
T Consensus 319 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 319 NNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 88887655 67788888888888888865 467788888888888888887666 7888888888888888875
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=306.39 Aligned_cols=320 Identities=22% Similarity=0.217 Sum_probs=226.4
Q ss_pred EEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCcc
Q 036117 236 YLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAG 315 (641)
Q Consensus 236 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 315 (641)
.++.+++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+.++++|++|++++|.
T Consensus 15 ~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 4555555554 3444332 356666666666665555566666666666666666666666666666667777776666
Q ss_pred CCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEE
Q 036117 316 LNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLY 395 (641)
Q Consensus 316 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~ 395 (641)
+.+..+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+. +..+..+..+++|++|+
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-------------~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-------------YISHRAFSGLNSLEQLT 158 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-------------EECTTSSTTCTTCCEEE
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-------------eeChhhccCCCCCCEEE
Confidence 66555555666777777777777777666666777777777775555433 33445667778888888
Q ss_pred ccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEcc
Q 036117 396 LFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFS 475 (641)
Q Consensus 396 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls 475 (641)
+++|++++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.+|....... +|++|+++
T Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~------~L~~L~l~ 232 (477)
T 2id5_A 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL------NLTSLSIT 232 (477)
T ss_dssp EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC------CCSEEEEE
T ss_pred CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCc------cccEEECc
Confidence 888888877777788888888888888888876667788888888888888877766666554444 68888888
Q ss_pred CCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccC
Q 036117 476 YNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVL 555 (641)
Q Consensus 476 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~ 555 (641)
+|.+++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++++..
T Consensus 233 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 312 (477)
T 2id5_A 233 HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312 (477)
T ss_dssp SSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeC
Confidence 88877433346777788888888888877666667777888888888888887777777778888888888888887776
Q ss_pred ChhhhcCCCCCEEeCcCCcCcc
Q 036117 556 TSNWGKCTNLSNFRISGNRIKG 577 (641)
Q Consensus 556 ~~~~~~l~~L~~L~L~~n~l~~ 577 (641)
+..+..+++|++|++++|++.+
T Consensus 313 ~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 313 ESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp GGGBSCGGGCCEEECCSSCEEC
T ss_pred HhHcCCCcccCEEEccCCCccC
Confidence 6677777888888888887764
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=307.00 Aligned_cols=324 Identities=19% Similarity=0.160 Sum_probs=286.1
Q ss_pred CCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccC
Q 036117 258 LRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSI 337 (641)
Q Consensus 258 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 337 (641)
-+.++.+++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 357888888887 5666543 6899999999999998888999999999999999999888889999999999999999
Q ss_pred ccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCe
Q 036117 338 NNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFD 417 (641)
Q Consensus 338 n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 417 (641)
|++++..+..+..+++|++|++++|.+. +..+..+..+++|++|++++|.+.+..+..|..+++|++
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIV-------------ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCC-------------EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred CcCCccCcccccCCCCCCEEECCCCccc-------------cCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence 9999766667888999999997766554 345667888999999999999999888889999999999
Q ss_pred EecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEe
Q 036117 418 LQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLT 497 (641)
Q Consensus 418 L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ 497 (641)
|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+. +|++|++++|...+.+|.......+|+.|+
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY------RLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT------TCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCc------ccceeeCCCCccccccCcccccCccccEEE
Confidence 99999999976667799999999999999999877777777776 899999999998888888877788999999
Q ss_pred ccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcc
Q 036117 498 ANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKG 577 (641)
Q Consensus 498 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 577 (641)
+++|++.+..+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|++++..|..+..+++|++|++++|++++
T Consensus 231 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp EESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred CcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 99999985555678999999999999999998888889999999999999999999999999999999999999999997
Q ss_pred cCCccccCCCCCCEEeCCCCcCcccC
Q 036117 578 GIPAELGNLTYLQNLDIFDNQLTGKI 603 (641)
Q Consensus 578 ~~p~~l~~l~~L~~L~L~~n~l~~~i 603 (641)
..+..|..+++|++|++++|++.+..
T Consensus 311 ~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 311 LEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp CCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred eCHhHcCCCcccCEEEccCCCccCcc
Confidence 77778899999999999999998543
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.3e-33 Score=286.14 Aligned_cols=311 Identities=20% Similarity=0.202 Sum_probs=247.0
Q ss_pred CCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEE
Q 036117 86 AFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLL 165 (641)
Q Consensus 86 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 165 (641)
.++++++|+++++.+....+..+..+++|++|++++|.+++..+..|+.+++|++|++++|.+++..|..+.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46788889998888875555557888889999999988887777788888899999999988888778888888999999
Q ss_pred EeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCc-hhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcc
Q 036117 166 RIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP-SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF 244 (641)
Q Consensus 166 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 244 (641)
++++|.+.......|.++++|++|++++|.+..++ ..+..+++|++|++++|.+.+ ++ +..+++|+.+++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~---~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC---GGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc---cccccccceeecccccc
Confidence 99998888877777888889999999998886664 457888899999999888873 33 35678888999988877
Q ss_pred cccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCC
Q 036117 245 EGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKEL 324 (641)
Q Consensus 245 ~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 324 (641)
.+ +...++|++|++++|.+... +. ...++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 63 23446788999998888744 32 2347888999999888864 567888889999999998888778888
Q ss_pred CCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCC
Q 036117 325 GFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGP 404 (641)
Q Consensus 325 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 404 (641)
..+++|++|++++|++++ +|..+..+++|++|++++|+++. +|..+..+++|++|++++|++++.
T Consensus 269 ~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~--------------~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH--------------VERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC--------------CGGGHHHHTTCSEEECCSSCCCCC
T ss_pred cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee--------------cCccccccCcCCEEECCCCcccee
Confidence 888899999999998884 45566778888888877776653 344556678899999999988755
Q ss_pred chhhhhCCCCCCeEecccCcCCcc
Q 036117 405 IPQQIGNLTNLFDLQLANNFFNGS 428 (641)
Q Consensus 405 ~~~~~~~l~~L~~L~l~~n~l~~~ 428 (641)
+ +..+++|+.|++++|.+.+.
T Consensus 334 -~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 334 -K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp -C--CCTTCCCSEEECCSSCEEHH
T ss_pred -C--chhhccCCEEEcCCCCccch
Confidence 2 66778899999999988753
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.8e-32 Score=277.05 Aligned_cols=308 Identities=24% Similarity=0.366 Sum_probs=176.4
Q ss_pred CCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCC
Q 036117 83 DFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNA 162 (641)
Q Consensus 83 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 162 (641)
.+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.++.. ..+.++++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred cchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 34567788888888887763 33 377788888888888877743 33 77778888888887777642 346666666
Q ss_pred cEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCC
Q 036117 163 WLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN 242 (641)
Q Consensus 163 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n 242 (641)
++|++++|.+.+..+ +..+++|++|++++|.....+..+..+++|++|++++|.+.+. +
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~------------------ 171 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-T------------------ 171 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC-G------------------
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc-h------------------
Confidence 666666666654433 5555555555555554322222345555555555555544421 1
Q ss_pred cccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCc
Q 036117 243 SFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPK 322 (641)
Q Consensus 243 ~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 322 (641)
+ +..+++|++|++++|.+.+. +. +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+.+..+
T Consensus 172 ------~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 172 ------P--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp ------G--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred ------h--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence 1 33444444444444444322 11 3444444444444444443322 4444555555555555433322
Q ss_pred CCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCc
Q 036117 323 ELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFS 402 (641)
Q Consensus 323 ~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~ 402 (641)
+..+++|++|++++|.+++. ..+..+++|+.|++++|+++.+ +.+..+++|++|++++|+++
T Consensus 239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI---------------SVLNNLSQLNSLFLNNNQLG 300 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC---------------GGGGGCTTCSEEECCSSCCC
T ss_pred -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC---------------hhhcCCCCCCEEECcCCcCC
Confidence 45555666666666655532 2355556666666555554432 23445667777777777777
Q ss_pred CCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCc
Q 036117 403 GPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLT 450 (641)
Q Consensus 403 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 450 (641)
+..+..+..+++|++|++++|.+++..| +..+++|++|++++|+++
T Consensus 301 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 301 NEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 6677777777777777777777765444 666777777777777654
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.6e-32 Score=298.26 Aligned_cols=311 Identities=20% Similarity=0.199 Sum_probs=230.7
Q ss_pred CCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEE
Q 036117 86 AFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLL 165 (641)
Q Consensus 86 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 165 (641)
.+++++.+++++|.+....+..+..+++|++|++++|.+++..|..|+.+++|++|++++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 35677888888887776555567778888888888888887667778888888888888888887777777888888888
Q ss_pred EeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCc-hhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcc
Q 036117 166 RIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP-SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF 244 (641)
Q Consensus 166 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 244 (641)
++++|.+...++..|.++++|++|++++|.+..++ ..+..+++|++|++++|.+.+ ++ +..+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhhhhhcccCcc
Confidence 88888888777777788888888888888875554 357778888888888887763 33 35577788888888876
Q ss_pred cccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCC
Q 036117 245 EGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKEL 324 (641)
Q Consensus 245 ~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 324 (641)
.+ +...++|+.|++++|.+....+. + .++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|..+
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence 63 23455788888888877643222 2 35788888888887763 567778888888888888877777778
Q ss_pred CCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCC
Q 036117 325 GFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGP 404 (641)
Q Consensus 325 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 404 (641)
..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.+.+.
T Consensus 275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~--------------i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH--------------VERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC--------------CGGGHHHHTTCSEEECCSSCCCCC
T ss_pred cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc--------------cCcccccCCCCCEEECCCCCCCCc
Confidence 888888888888888875 45566667788888876666542 345556677888888888887754
Q ss_pred chhhhhCCCCCCeEecccCcCCcc
Q 036117 405 IPQQIGNLTNLFDLQLANNFFNGS 428 (641)
Q Consensus 405 ~~~~~~~l~~L~~L~l~~n~l~~~ 428 (641)
. +..+++|+.|++++|.+.+.
T Consensus 340 ~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 340 K---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp C---CCTTCCCSEEECCSSCEEHH
T ss_pred C---hhhcCCCCEEEeeCCCCCCh
Confidence 2 55677888888888887653
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.1e-32 Score=281.28 Aligned_cols=311 Identities=17% Similarity=0.195 Sum_probs=209.1
Q ss_pred CCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEE
Q 036117 255 FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLE 334 (641)
Q Consensus 255 l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 334 (641)
+++++.++++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 46778888888877744444466777888888888887776666777778888888888877777677777778888888
Q ss_pred ccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCC
Q 036117 335 LSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTN 414 (641)
Q Consensus 335 l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 414 (641)
+++|++++..+..+..+++|++|++++|.++ +..+..+..+++|++|++++|++++. .+..+++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~ 187 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-------------RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPS 187 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTT
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccC-------------ccChhhccCCCCCCEEECCCCcCCcc---ccccccc
Confidence 8888777444444567777777775555443 23345566777777777777777654 2455677
Q ss_pred CCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCc
Q 036117 415 LFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLI 494 (641)
Q Consensus 415 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~ 494 (641)
|+.+++++|.+.+ +...++|++|++++|.+... |... . ++|++|++++|.+++. ..+..+++|+
T Consensus 188 L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~~--~------~~L~~L~l~~n~l~~~--~~l~~l~~L~ 251 (390)
T 3o6n_A 188 LFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--N------VELTILKLQHNNLTDT--AWLLNYPGLV 251 (390)
T ss_dssp CSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECCC--C------SSCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred cceeecccccccc-----cCCCCcceEEECCCCeeeec-cccc--c------ccccEEECCCCCCccc--HHHcCCCCcc
Confidence 7777777777653 23345677777777776533 2211 1 2677777777777642 4566677777
Q ss_pred eEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCc
Q 036117 495 YLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNR 574 (641)
Q Consensus 495 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~ 574 (641)
.|++++|++.+..|..+..+++|++|++++|++.+ ++..+..+++|++|++++|+++ .+|..+..+++|++|++++|+
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred EEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCc
Confidence 77777777776666667777777777777777764 3444456677777777777766 345556667777777777777
Q ss_pred CcccCCccccCCCCCCEEeCCCCcCccc
Q 036117 575 IKGGIPAELGNLTYLQNLDIFDNQLTGK 602 (641)
Q Consensus 575 l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 602 (641)
+++. | +..+++|++|++++|++.+.
T Consensus 330 i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 330 IVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred ccee-C--chhhccCCEEEcCCCCccch
Confidence 7633 2 55666777777777777644
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.4e-31 Score=272.96 Aligned_cols=307 Identities=25% Similarity=0.333 Sum_probs=182.9
Q ss_pred cCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCC
Q 036117 252 IKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLT 331 (641)
Q Consensus 252 l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 331 (641)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 3456677777777777763 33 36667777777777777665432 66666677777666666442 2355666666
Q ss_pred EEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhC
Q 036117 332 FLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGN 411 (641)
Q Consensus 332 ~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~ 411 (641)
+|++++|.+.+..+ +..+++|+.|++ ++|......+ .+..
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l-------------------------------------~~n~~~~~~~-~~~~ 153 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNL-------------------------------------GANHNLSDLS-PLSN 153 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEEC-------------------------------------TTCTTCCCCG-GGTT
T ss_pred EEECcCCcccCchh--hccCCceeEEEC-------------------------------------CCCCCccccc-chhh
Confidence 66666666553222 444555555554 4443222222 2444
Q ss_pred CCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCC
Q 036117 412 LTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGG 491 (641)
Q Consensus 412 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~ 491 (641)
+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. +. +..+. +|+.+++++|.+++..+ +..++
T Consensus 154 l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~------~L~~L~l~~n~l~~~~~--~~~~~ 221 (347)
T 4fmz_A 154 MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLT------SLHYFTAYVNQITDITP--VANMT 221 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCT------TCCEEECCSSCCCCCGG--GGGCT
T ss_pred CCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCC------ccceeecccCCCCCCch--hhcCC
Confidence 4444444444444432211 44444555555555544321 11 33333 45555555555543222 45566
Q ss_pred CCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCc
Q 036117 492 NLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRIS 571 (641)
Q Consensus 492 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 571 (641)
+|+.|++++|++.+..+ +..+++|++|++++|.+.+. ..+..+++|++|++++|++++. ..+..+++|++|+++
T Consensus 222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLN 295 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECc
Confidence 66666666666654332 66677777777777777653 3567777888888888877754 357777888888888
Q ss_pred CCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCc
Q 036117 572 GNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLS 624 (641)
Q Consensus 572 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~ 624 (641)
+|++.+..|..++.+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 888877777777888888888888888875444 667788888888888775
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.4e-33 Score=277.51 Aligned_cols=248 Identities=32% Similarity=0.483 Sum_probs=201.9
Q ss_pred eecccccccc--cCCcCCCCCCCCCEEEccC-CcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccC
Q 036117 370 LQLQMNDLSG--KLPPEIGLLPKLEYLYLFD-NKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSS 446 (641)
Q Consensus 370 l~l~~~~l~~--~~~~~l~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~ 446 (641)
+++++|.+.+ .+|..++.+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++
T Consensus 55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 134 (313)
T 1ogq_A 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134 (313)
T ss_dssp EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred EECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC
Confidence 3344555555 5566666677777777774 777777777777788888888888888777777788888888888888
Q ss_pred CcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCC-CCceEeccCCcccCCCccccccCCCCcEEECCCC
Q 036117 447 NQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGG-NLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQN 525 (641)
Q Consensus 447 n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 525 (641)
|.+++.+|..+..++ +|++|++++|++++.+|..+..++ .|+.|++++|++.+.+|..+..++ |++|++++|
T Consensus 135 N~l~~~~p~~~~~l~------~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 135 NALSGTLPPSISSLP------NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp SEEESCCCGGGGGCT------TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred CccCCcCChHHhcCC------CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 888777777777777 788888888888878888888887 888888888888888888888877 899999999
Q ss_pred cCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCc
Q 036117 526 RLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPA 605 (641)
Q Consensus 526 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~ 605 (641)
.+.+..+..++.+++|+.|++++|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|+|++|+++|.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 88888888888899999999999998877665 77888999999999999888999999999999999999999988887
Q ss_pred cccCCCCCCEEeCcCCC-Cccc
Q 036117 606 QLFRSSFLIRLNLRRNQ-LSDK 626 (641)
Q Consensus 606 ~l~~~~~L~~l~l~~n~-l~~~ 626 (641)
. ..+++|+.+++++|+ ++|.
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEEST
T ss_pred C-ccccccChHHhcCCCCccCC
Confidence 6 778889999999998 6663
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.6e-32 Score=295.01 Aligned_cols=312 Identities=17% Similarity=0.184 Sum_probs=236.4
Q ss_pred CCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEE
Q 036117 255 FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLE 334 (641)
Q Consensus 255 l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 334 (641)
+.+++.++++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56788888888888755555567788888888888888887777888888888888888888887777788888888888
Q ss_pred ccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCC
Q 036117 335 LSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTN 414 (641)
Q Consensus 335 l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 414 (641)
+++|.+++..+..+..+++|++|++++|.+ .+..|..++.+++|++|++++|.+++.. +..+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~ 193 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNL-------------ERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPS 193 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCC-------------CBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTT
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcC-------------CCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhh
Confidence 888888855555567888888888555544 4445567778888888888888887653 455678
Q ss_pred CCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCc
Q 036117 415 LFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLI 494 (641)
Q Consensus 415 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~ 494 (641)
|+.|++++|.+.+ +...++|++|++++|.+....+ .+ +++|+.|++++|.+++ +..+..+++|+
T Consensus 194 L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--------~~~L~~L~L~~n~l~~--~~~l~~l~~L~ 257 (597)
T 3oja_B 194 LFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG-PV--------NVELTILKLQHNNLTD--TAWLLNYPGLV 257 (597)
T ss_dssp CSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEEC-SC--------CSCCCEEECCSSCCCC--CGGGGGCTTCS
T ss_pred hhhhhcccCcccc-----ccCCchhheeeccCCccccccc-cc--------CCCCCEEECCCCCCCC--ChhhccCCCCC
Confidence 8888888887764 3345678888888888763322 11 1268888888888865 46677788888
Q ss_pred eEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCc
Q 036117 495 YLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNR 574 (641)
Q Consensus 495 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~ 574 (641)
.|++++|.+.+..|..+..+++|+.|++++|.+.+ +|..++.+++|+.|+|++|.++ .+|..+..+++|++|++++|+
T Consensus 258 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred EEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCC
Confidence 88888888887777788888888888888888875 4555567788888888888877 456667778888888888888
Q ss_pred CcccCCccccCCCCCCEEeCCCCcCcccC
Q 036117 575 IKGGIPAELGNLTYLQNLDIFDNQLTGKI 603 (641)
Q Consensus 575 l~~~~p~~l~~l~~L~~L~L~~n~l~~~i 603 (641)
+++. | +..+++|+.|++++|++.+..
T Consensus 336 l~~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 336 IVTL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 8743 3 566778888888888877653
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=6e-32 Score=272.03 Aligned_cols=277 Identities=19% Similarity=0.247 Sum_probs=186.0
Q ss_pred CcHHHHHHHHHHHhcCCCCC---CCCCCC-CCCCCCCccccceeeCC---------CCCEEEEEcCCCCCccccCCcCCC
Q 036117 19 SAQKEAKALLNWKSSLVSSS---LPSWTA-INSNSGPCNWNGIQCNE---------VGSISEINLANSGLDGTLDGFDFS 85 (641)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~~~---~~~W~~-~~~~~~~c~~~gv~c~~---------~~~v~~l~l~~~~~~~~~~~~~~~ 85 (641)
+..+|+.||++||.++..++ ..+|.. ...+.++|.|.|+.|.. .++++.|+++++.+. .+| ..+.
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp-~~l~ 101 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP-DQAF 101 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCC-SCGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcC-hhhh
Confidence 44578999999999874332 456731 01126789999999952 256666666666665 444 4455
Q ss_pred CCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEE
Q 036117 86 AFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLL 165 (641)
Q Consensus 86 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 165 (641)
++++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+.+.+|..+...
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~------ 173 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST------ 173 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE------
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc------
Confidence 5666666666666666 55656666666666666666666 556566666666666666665555555544320
Q ss_pred EeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccc
Q 036117 166 RIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFE 245 (641)
Q Consensus 166 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 245 (641)
.....+.++++|++|++++|.+..+|..+..+++|++|++++|.+. .++.. +..+++|++|++++|.+.
T Consensus 174 ---------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~-l~~l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 174 ---------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHLPKLEELDLRGCTAL 242 (328)
T ss_dssp ---------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGG-GGGCTTCCEEECTTCTTC
T ss_pred ---------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchh-hccCCCCCEEECcCCcch
Confidence 0011233466667777777766777777777777777777777776 34443 467777788888777777
Q ss_pred ccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccC
Q 036117 246 GEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGL 316 (641)
Q Consensus 246 ~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 316 (641)
+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++++.+++..+.+
T Consensus 243 ~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 77777777788888888888777777777777788888888888887777888888888888887776544
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.5e-34 Score=303.34 Aligned_cols=390 Identities=18% Similarity=0.149 Sum_probs=257.0
Q ss_pred CCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccc----cCCcccCCCCCCCEEEcCCCcCCccCCcccC-CCCc
Q 036117 207 SKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEG----EIPREIKTFPKLRHLKLGQNKLTGTIPDEIG-LLSN 281 (641)
Q Consensus 207 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~-~~~~ 281 (641)
++|++|+++++.+........+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+. .++.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4577778877777643333335667777777777777663 2344556667777777777666542222111 1220
Q ss_pred ccEeeeecccccccCccccCCCCCCCeeeccCccCCC----CCCcCCCCCCCCCEEEccCccccccCchhhhc-----CC
Q 036117 282 LEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNS----SIPKELGFCANLTFLELSINNLTGSLPLSLAS-----LR 352 (641)
Q Consensus 282 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~-----~~ 352 (641)
..++|++|++++|.+.. .++..+..+++|++|++++|.+++..+..+.. .+
T Consensus 83 --------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 83 --------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp --------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred --------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 00134444444444432 23444555566666666666665443333222 34
Q ss_pred CCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhh-----CCCCCCeEecccCcCCc
Q 036117 353 QISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIG-----NLTNLFDLQLANNFFNG 427 (641)
Q Consensus 353 ~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~ 427 (641)
+|++|++++|.++.... ..++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++
T Consensus 143 ~L~~L~L~~n~l~~~~~---------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASC---------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp CCCEEECTTSCCBGGGH---------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred cceEEECCCCCCCHHHH---------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 56666666655442100 01223445578899999999998766555443 36799999999999886
Q ss_pred c----CcccccCCCCCCEEEccCCcCcccCCcchh-----cCCCCCCCCCccEEEccCCccccc----CCccccCCCCCc
Q 036117 428 S----IPSTIGNLSSLVKLSLSSNQLTGTLPPEIG-----NSKSDFGPRFLRNVSFSYNNFSGK----LPPGICRGGNLI 494 (641)
Q Consensus 428 ~----~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-----~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~~~~~~L~ 494 (641)
. ++..+..+++|++|++++|.+.+.....+. ... +|++|++++|.+++. ++..+..+++|+
T Consensus 214 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~------~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 287 (461)
T 1z7x_W 214 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS------RLRTLWIWECGITAKGCGDLCRVLRAKESLK 287 (461)
T ss_dssp THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC------CCCEEECTTSCCCHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCC------CceEEECcCCCCCHHHHHHHHHHHhhCCCcc
Confidence 3 566777889999999999988754322221 233 799999999988764 566777789999
Q ss_pred eEeccCCcccCCCcccccc-----CCCCcEEECCCCcCccc----cCcccCCCCCCcEEeCCCCcccccCChhhhc----
Q 036117 495 YLTANVNKLVGPIPESLWN-----CTGLTRVRLEQNRLDGD----ITNALGIYPDLQYIDLGDNQLSGVLTSNWGK---- 561 (641)
Q Consensus 495 ~L~l~~n~~~~~~~~~l~~-----~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~---- 561 (641)
.|++++|.+.+..+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|++++..+..+..
T Consensus 288 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 367 (461)
T 1z7x_W 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367 (461)
T ss_dssp EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred eEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcC
Confidence 9999999886544433332 36899999999998765 4556677899999999999988766655543
Q ss_pred -CCCCCEEeCcCCcCcc----cCCccccCCCCCCEEeCCCCcCcccCCcc----cc-CCCCCCEEeCcCCCCcccCcccc
Q 036117 562 -CTNLSNFRISGNRIKG----GIPAELGNLTYLQNLDIFDNQLTGKIPAQ----LF-RSSFLIRLNLRRNQLSDKIPAEI 631 (641)
Q Consensus 562 -l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~ip~~----l~-~~~~L~~l~l~~n~l~~~~p~~~ 631 (641)
.++|++|++++|.+++ .+|..+..+++|++|++++|++++.-... +. ....|+.|++.++......+..+
T Consensus 368 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l 447 (461)
T 1z7x_W 368 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 447 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred CCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHH
Confidence 6789999999999886 67888888999999999999987652222 21 23468888888888776555443
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.9e-34 Score=303.84 Aligned_cols=383 Identities=19% Similarity=0.167 Sum_probs=240.8
Q ss_pred CCCCEEEcCCCCCCCCc--hhhcCCCCCcEEEeeCCcCCCCC---ChhhhcCCCCCcEEeccCCcccccCCccc-CCCC-
Q 036117 184 ASLTDLWLDYNLLEKFP--SFIAECSKLMFLDLSDNLIMGHI---PIEQLTHLENLEYLNLTKNSFEGEIPREI-KTFP- 256 (641)
Q Consensus 184 ~~L~~L~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~- 256 (641)
++|++|+++++.+...+ ..+..+++|++|++++|.+.+.. -...+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 57899999999985543 34788999999999999987321 12345788999999999999876444333 2344
Q ss_pred ---CCCEEEcCCCcCCc----cCCcccCCCCcccEeeeecccccccCccccC-----CCCCCCeeeccCccCCCCC----
Q 036117 257 ---KLRHLKLGQNKLTG----TIPDEIGLLSNLEILEFHENLFHGLIPSSLG-----NLRRLQRLNLKSAGLNSSI---- 320 (641)
Q Consensus 257 ---~L~~L~L~~~~l~~----~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~---- 320 (641)
+|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+.+..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 69999999998874 3466677788888888888877654333221 2345555555555554321
Q ss_pred CcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCC-CCCCCCCEEEccCC
Q 036117 321 PKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI-GLLPKLEYLYLFDN 399 (641)
Q Consensus 321 ~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l-~~~~~L~~L~L~~n 399 (641)
+..+..+++|++|++++|.+.+..+..+.. .+ ...++|++|++++|
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~---------------------------------~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQ---------------------------------GLKDSPCQLEALKLESC 209 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHH---------------------------------HHHHSCCCCCEEECTTS
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHH---------------------------------HHhcCCCCceEEEccCC
Confidence 222333444555555544444322222211 00 01335666666666
Q ss_pred cCcCC----chhhhhCCCCCCeEecccCcCCccC-----cccccCCCCCCEEEccCCcCccc----CCcchhcCCCCCCC
Q 036117 400 KFSGP----IPQQIGNLTNLFDLQLANNFFNGSI-----PSTIGNLSSLVKLSLSSNQLTGT----LPPEIGNSKSDFGP 466 (641)
Q Consensus 400 ~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~ls~n~l~~~----~~~~~~~~~~~~~~ 466 (641)
.+++. ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++. ++..+..++
T Consensus 210 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~----- 284 (461)
T 1z7x_W 210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE----- 284 (461)
T ss_dssp CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT-----
T ss_pred CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC-----
Confidence 66543 3445555666666666666655321 12222456666666666666543 344444444
Q ss_pred CCccEEEccCCcccccCCccccC-----CCCCceEeccCCcccCC----CccccccCCCCcEEECCCCcCccccCcccC-
Q 036117 467 RFLRNVSFSYNNFSGKLPPGICR-----GGNLIYLTANVNKLVGP----IPESLWNCTGLTRVRLEQNRLDGDITNALG- 536 (641)
Q Consensus 467 ~~L~~L~ls~n~l~~~~~~~~~~-----~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~- 536 (641)
+|++|++++|.+++..+..+.. .+.|+.|++++|.+.+. ++..+..+++|++|++++|.+.+..+..+.
T Consensus 285 -~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 363 (461)
T 1z7x_W 285 -SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363 (461)
T ss_dssp -TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred -CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH
Confidence 5666666666665433322222 25777777777777654 455677788888899988888765443333
Q ss_pred ----CCCCCcEEeCCCCcccc----cCChhhhcCCCCCEEeCcCCcCcccCCccc-----cCCCCCCEEeCCCCcCcccC
Q 036117 537 ----IYPDLQYIDLGDNQLSG----VLTSNWGKCTNLSNFRISGNRIKGGIPAEL-----GNLTYLQNLDIFDNQLTGKI 603 (641)
Q Consensus 537 ----~l~~L~~L~Ls~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~i 603 (641)
..++|++|++++|++++ .+|..+..+++|++|++++|++++.....+ .....|+.|++.++......
T Consensus 364 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~ 443 (461)
T 1z7x_W 364 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 443 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHH
Confidence 26789999999999886 677788888999999999998875422111 12356888888887776544
Q ss_pred Cc
Q 036117 604 PA 605 (641)
Q Consensus 604 p~ 605 (641)
++
T Consensus 444 ~~ 445 (461)
T 1z7x_W 444 ED 445 (461)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.7e-29 Score=253.88 Aligned_cols=269 Identities=17% Similarity=0.199 Sum_probs=152.3
Q ss_pred CCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCc
Q 036117 304 RRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPP 383 (641)
Q Consensus 304 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~ 383 (641)
+.++.|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|+++.+ |.
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l--------------~~ 117 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL--------------PE 117 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC--------------CS
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc--------------Ch
Confidence 3455555555555554444555666666666666666655566666666666666665554422 22
Q ss_pred CCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCc--cCcccccCCCCCCEEEccCCcCcccCCcchhcCC
Q 036117 384 EIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNG--SIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSK 461 (641)
Q Consensus 384 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 461 (641)
.+. ++|++|++++|++++..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++ .+|..+.
T Consensus 118 ~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--- 191 (330)
T 1xku_A 118 KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--- 191 (330)
T ss_dssp SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC---
T ss_pred hhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc---
Confidence 222 578888888888887777777888888888888887753 45566777788888888887776 3443322
Q ss_pred CCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCC
Q 036117 462 SDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDL 541 (641)
Q Consensus 462 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 541 (641)
++|++|++++|++++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++
T Consensus 192 -----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~----------------- 249 (330)
T 1xku_A 192 -----PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN----------------- 249 (330)
T ss_dssp -----TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS-----------------
T ss_pred -----ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC-----------------
Confidence 1566666666666554455555555555555555555444444444444444444444
Q ss_pred cEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccC------CCCCCEEeCCCCcCcc--cCCccccCCCCC
Q 036117 542 QYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGN------LTYLQNLDIFDNQLTG--KIPAQLFRSSFL 613 (641)
Q Consensus 542 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~L~~n~l~~--~ip~~l~~~~~L 613 (641)
|+++ .+|..+..+++|++|++++|++++..+..|.. .++++.+++++|++.. ..|..+..+.++
T Consensus 250 -------N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l 321 (330)
T 1xku_A 250 -------NKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321 (330)
T ss_dssp -------SCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred -------CcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccce
Confidence 4444 33444444445555555555544333333322 2455666666666542 223445555666
Q ss_pred CEEeCcCCC
Q 036117 614 IRLNLRRNQ 622 (641)
Q Consensus 614 ~~l~l~~n~ 622 (641)
+.+++++|+
T Consensus 322 ~~l~L~~N~ 330 (330)
T 1xku_A 322 AAVQLGNYK 330 (330)
T ss_dssp GGEEC----
T ss_pred eEEEecccC
Confidence 666666653
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.7e-29 Score=255.52 Aligned_cols=293 Identities=25% Similarity=0.335 Sum_probs=154.9
Q ss_pred CCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEec
Q 036117 89 NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIG 168 (641)
Q Consensus 89 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 168 (641)
++++++++++.+. .+|..+ .++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4555555555554 334333 2455555555555554444455555555555555555554444445555555555554
Q ss_pred cccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccc--c
Q 036117 169 ANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFE--G 246 (641)
Q Consensus 169 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~--~ 246 (641)
+| .+..+|..+. ++|++|++++|.+. .++...+..+++|++|++++|.++ +
T Consensus 111 ~n------------------------~l~~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 163 (332)
T 2ft3_A 111 KN------------------------HLVEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSG 163 (332)
T ss_dssp SS------------------------CCCSCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred CC------------------------cCCccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCC
Confidence 44 4444444332 45555555555555 334444455666666666666654 2
Q ss_pred cCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCC
Q 036117 247 EIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGF 326 (641)
Q Consensus 247 ~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 326 (641)
..+..+..+ +|++|++++|.+++ +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred CCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 444455555 66666666666663 343332 56666666666666665556666666666666666666555555666
Q ss_pred CCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCc--CC
Q 036117 327 CANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFS--GP 404 (641)
Q Consensus 327 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~--~~ 404 (641)
+++|++|++++|+++ .+|..+..+++|+.|++++|+++.+.. ..+.+..+ ....+.|+.|++++|.+. +.
T Consensus 240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~-----~~~~~~~~--~~~~~~l~~L~l~~N~~~~~~~ 311 (332)
T 2ft3_A 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV-----NDFCPVGF--GVKRAYYNGISLFNNPVPYWEV 311 (332)
T ss_dssp CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT-----TSSSCSSC--CSSSCCBSEEECCSSSSCGGGS
T ss_pred CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccCh-----hHcccccc--ccccccccceEeecCccccccc
Confidence 666666666666666 555556666666666655555443210 00000000 001244556666665554 34
Q ss_pred chhhhhCCCCCCeEecccC
Q 036117 405 IPQQIGNLTNLFDLQLANN 423 (641)
Q Consensus 405 ~~~~~~~l~~L~~L~l~~n 423 (641)
.+.+|..+++|+.+++++|
T Consensus 312 ~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 312 QPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CGGGGTTBCCSTTEEC---
T ss_pred Ccccccccchhhhhhcccc
Confidence 4445555555555555554
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.8e-29 Score=255.36 Aligned_cols=288 Identities=21% Similarity=0.285 Sum_probs=156.7
Q ss_pred cccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCC
Q 036117 281 NLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGIS 360 (641)
Q Consensus 281 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~ 360 (641)
+++.++++++.+.. +|..+ .++++.|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 34555555554442 23222 1455556666555555545555666666666666666665556666666666666655
Q ss_pred cccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCc--cCcccccCCCC
Q 036117 361 NNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNG--SIPSTIGNLSS 438 (641)
Q Consensus 361 ~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~ 438 (641)
+|+++.+ |..+. ++|++|++++|++++..+..+..+++|+.|++++|.+.. ..+..+..+ +
T Consensus 111 ~n~l~~l--------------~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 111 KNHLVEI--------------PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173 (332)
T ss_dssp SSCCCSC--------------CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred CCcCCcc--------------Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence 5554322 22222 566677777776665555556666666777766666642 344445555 6
Q ss_pred CCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCc
Q 036117 439 LVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLT 518 (641)
Q Consensus 439 L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 518 (641)
|++|++++|.+++ +|..+. ++|+.|++++|++.+..+..+..+++|+
T Consensus 174 L~~L~l~~n~l~~-l~~~~~--------------------------------~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 220 (332)
T 2ft3_A 174 LNYLRISEAKLTG-IPKDLP--------------------------------ETLNELHLDHNKIQAIELEDLLRYSKLY 220 (332)
T ss_dssp CSCCBCCSSBCSS-CCSSSC--------------------------------SSCSCCBCCSSCCCCCCTTSSTTCTTCS
T ss_pred cCEEECcCCCCCc-cCcccc--------------------------------CCCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 6666666666552 333221 3444444444444444444455555555
Q ss_pred EEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccC------CCCCCEE
Q 036117 519 RVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGN------LTYLQNL 592 (641)
Q Consensus 519 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L 592 (641)
.|++++|++.+..+..++.+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .++|+.|
T Consensus 221 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L 299 (332)
T 2ft3_A 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299 (332)
T ss_dssp CCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEE
T ss_pred EEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccce
Confidence 5555555555544445555556666666666555 44555555666666666666665444444433 2456667
Q ss_pred eCCCCcCc--ccCCccccCCCCCCEEeCcCCC
Q 036117 593 DIFDNQLT--GKIPAQLFRSSFLIRLNLRRNQ 622 (641)
Q Consensus 593 ~L~~n~l~--~~ip~~l~~~~~L~~l~l~~n~ 622 (641)
++++|++. +..|..+..++.|+.+++++|+
T Consensus 300 ~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred EeecCcccccccCcccccccchhhhhhccccc
Confidence 77777665 3344556666667777766653
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.2e-29 Score=251.77 Aligned_cols=243 Identities=23% Similarity=0.316 Sum_probs=129.4
Q ss_pred CCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEec
Q 036117 89 NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIG 168 (641)
Q Consensus 89 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 168 (641)
++++++++++.+. .+|..+. +.+++|++++|.+++..+..|+++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5666777666665 3444332 456666666666665555556666666666666666665555566666666666665
Q ss_pred cccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccc--
Q 036117 169 ANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEG-- 246 (641)
Q Consensus 169 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~-- 246 (641)
+|.++. +|..+. ++|++|++++|.+. .++...+.++++|++|++++|.+..
T Consensus 109 ~n~l~~------------------------l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 161 (330)
T 1xku_A 109 KNQLKE------------------------LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG 161 (330)
T ss_dssp SSCCSB------------------------CCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred CCcCCc------------------------cChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccC
Confidence 555543 333222 34555555555544 3333344555555555555555432
Q ss_pred cCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCC
Q 036117 247 EIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGF 326 (641)
Q Consensus 247 ~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 326 (641)
..+..+..+++|++|++++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred cChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 34445555556666666665555 2333222 45555555555555544455555555555555555554444444455
Q ss_pred CCCCCEEEccCccccccCchhhhcCCCCCeEeCCccccc
Q 036117 327 CANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLS 365 (641)
Q Consensus 327 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~ 365 (641)
+++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 555555555555555 44444444555555554444443
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=5.2e-31 Score=289.04 Aligned_cols=354 Identities=15% Similarity=0.085 Sum_probs=183.6
Q ss_pred hhcCCCCCcEEEeeCCcCCCCCC---hhhhcCCCCCcEEeccCCccc----ccCCcccCCCCCCCEEEcCCCcCCccCCc
Q 036117 202 FIAECSKLMFLDLSDNLIMGHIP---IEQLTHLENLEYLNLTKNSFE----GEIPREIKTFPKLRHLKLGQNKLTGTIPD 274 (641)
Q Consensus 202 ~l~~~~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~n~~~----~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 274 (641)
....+++|++|++++|.+.+.-. ......+++|++|++++|.++ +.++..+..+++|++|++++|.+.+ ++.
T Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~ 237 (592)
T 3ogk_B 159 IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVG 237 (592)
T ss_dssp HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHH
T ss_pred HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHH
Confidence 34466777777777776653321 123345666777777666664 2233334456666666666666553 444
Q ss_pred ccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCC
Q 036117 275 EIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQI 354 (641)
Q Consensus 275 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L 354 (641)
.+..+++|++|+++.+..... ....+..+..+++|+.++++++.. +.+|..+..+++|
T Consensus 238 ~~~~~~~L~~L~l~~~~~~~~---------------------~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L 295 (592)
T 3ogk_B 238 FFKAAANLEEFCGGSLNEDIG---------------------MPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQI 295 (592)
T ss_dssp HHHHCTTCCEEEECBCCCCTT---------------------CTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGC
T ss_pred HHhhhhHHHhhcccccccccc---------------------hHHHHHHhhccccccccCccccch-hHHHHHHhhcCCC
Confidence 455566666666654221100 011122333444555555544321 2344444445555
Q ss_pred CeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcC-CchhhhhCCCCCCeEeccc-----------
Q 036117 355 SELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSG-PIPQQIGNLTNLFDLQLAN----------- 422 (641)
Q Consensus 355 ~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~----------- 422 (641)
++|++++|.++.. .++..+..+++|++|+++ +.+.+ .++.....+++|++|++++
T Consensus 296 ~~L~Ls~~~l~~~------------~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~ 362 (592)
T 3ogk_B 296 RKLDLLYALLETE------------DHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362 (592)
T ss_dssp CEEEETTCCCCHH------------HHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred cEEecCCCcCCHH------------HHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence 5555444432211 000112345556666555 22221 2222334556666666662
Q ss_pred CcCCcc-CcccccCCCCCCEEEccCCcCcccCCcchhc-CCCCCCCCCccEEEcc----CCccccc-----CCccccCCC
Q 036117 423 NFFNGS-IPSTIGNLSSLVKLSLSSNQLTGTLPPEIGN-SKSDFGPRFLRNVSFS----YNNFSGK-----LPPGICRGG 491 (641)
Q Consensus 423 n~l~~~-~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~-~~~~~~~~~L~~L~ls----~n~l~~~-----~~~~~~~~~ 491 (641)
+.+++. ++.....+++|++|+++.+.+++..+..+.. ++ +|++|+++ .+.+++. ++..+..++
T Consensus 363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~------~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~ 436 (592)
T 3ogk_B 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK------NLCDFRLVLLDREERITDLPLDNGVRSLLIGCK 436 (592)
T ss_dssp CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCC------SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT
T ss_pred CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCC------CCcEEEEeecCCCccccCchHHHHHHHHHHhCC
Confidence 333322 1222334566666666555555544444433 33 56666664 3444432 222345567
Q ss_pred CCceEeccCCc--ccCCCccccc-cCCCCcEEECCCCcCccc-cCcccCCCCCCcEEeCCCCccccc-CChhhhcCCCCC
Q 036117 492 NLIYLTANVNK--LVGPIPESLW-NCTGLTRVRLEQNRLDGD-ITNALGIYPDLQYIDLGDNQLSGV-LTSNWGKCTNLS 566 (641)
Q Consensus 492 ~L~~L~l~~n~--~~~~~~~~l~-~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~-~~~~~~~l~~L~ 566 (641)
+|+.|+++.|. +.+..+..+. .+++|++|++++|++++. .+..+..+++|++|++++|++++. ++..+..+++|+
T Consensus 437 ~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 516 (592)
T 3ogk_B 437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516 (592)
T ss_dssp TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCC
T ss_pred CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccC
Confidence 77777776543 4433333333 367788888888877653 344456778888888888887654 333445678888
Q ss_pred EEeCcCCcCcccCCccc-cCCCCCCEEeCCCC
Q 036117 567 NFRISGNRIKGGIPAEL-GNLTYLQNLDIFDN 597 (641)
Q Consensus 567 ~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n 597 (641)
+|++++|++++.....+ ..++.++...+..+
T Consensus 517 ~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 517 YLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred eeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 88888888765433333 34566665555444
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.6e-31 Score=290.28 Aligned_cols=379 Identities=15% Similarity=0.062 Sum_probs=193.3
Q ss_pred CCCCCcEEeccCCcccccCCcccCC-CC-CCCEEEcCCCcC-Cc-cCCcccCCCCcccEeeeeccccccc----CccccC
Q 036117 230 HLENLEYLNLTKNSFEGEIPREIKT-FP-KLRHLKLGQNKL-TG-TIPDEIGLLSNLEILEFHENLFHGL----IPSSLG 301 (641)
Q Consensus 230 ~l~~L~~L~l~~n~~~~~~~~~l~~-l~-~L~~L~L~~~~l-~~-~~~~~l~~~~~L~~L~l~~n~~~~~----~~~~l~ 301 (641)
.+++|++|++++|.+++..+..+.. ++ +|++|++++|.. .. .++.....+++|++|++++|.+.+. ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4455555555555444333333332 22 255555555431 10 0111112445555555555554433 112233
Q ss_pred CCCCCCeeeccCccCCC----CCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccc
Q 036117 302 NLRRLQRLNLKSAGLNS----SIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDL 377 (641)
Q Consensus 302 ~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l 377 (641)
.+++|++|++++|.+.+ .++..+..+++|++|++++|.+.+ ++..+..+++|++|+++..... .-
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~----------~~ 258 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNED----------IG 258 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCC----------TT
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccc----------cc
Confidence 45556666666555542 222233455666666666666653 4555666666666665432110 00
Q ss_pred cccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCc-ccccCCCCCCEEEccCCcCcccCCcc
Q 036117 378 SGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIP-STIGNLSSLVKLSLSSNQLTGTLPPE 456 (641)
Q Consensus 378 ~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~ 456 (641)
.+..+..+..+++|+.++++++.. +.+|..+..+++|++|++++|.+.+... ..+..+++|++|+++++-..+.++..
T Consensus 259 ~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~ 337 (592)
T 3ogk_B 259 MPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL 337 (592)
T ss_dssp CTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHH
T ss_pred hHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHH
Confidence 012233445566666666666432 2455555566666666666666543322 33456666666666632211122222
Q ss_pred hhcCCCCCCCCCccEEEcc-----------CCccccc-CCccccCCCCCceEeccCCcccCCCcccccc-CCCCcEEECC
Q 036117 457 IGNSKSDFGPRFLRNVSFS-----------YNNFSGK-LPPGICRGGNLIYLTANVNKLVGPIPESLWN-CTGLTRVRLE 523 (641)
Q Consensus 457 ~~~~~~~~~~~~L~~L~ls-----------~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~-~~~L~~L~l~ 523 (641)
...++ +|++|+++ .+.+++. ++.....+++|+.|++..+++.+..+..+.. +++|+.|+++
T Consensus 338 ~~~~~------~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 338 AQYCK------QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHCT------TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHhCC------CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 23334 56666666 2344332 1222334666677766666665555444444 6667777664
Q ss_pred ----CCcCccc-----cCcccCCCCCCcEEeCCCCc--ccccCChhhhc-CCCCCEEeCcCCcCcc-cCCccccCCCCCC
Q 036117 524 ----QNRLDGD-----ITNALGIYPDLQYIDLGDNQ--LSGVLTSNWGK-CTNLSNFRISGNRIKG-GIPAELGNLTYLQ 590 (641)
Q Consensus 524 ----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--~~~~~~~~~~~-l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~ 590 (641)
.|.+++. ++..+..+++|++|++++|. +++..+..+.. +++|++|++++|++++ .++..+..+++|+
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ 491 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCC
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccC
Confidence 4455432 22234456677777776543 45444444433 6667777777776654 2334446666777
Q ss_pred EEeCCCCcCccc-CCccccCCCCCCEEeCcCCCCccc
Q 036117 591 NLDIFDNQLTGK-IPAQLFRSSFLIRLNLRRNQLSDK 626 (641)
Q Consensus 591 ~L~L~~n~l~~~-ip~~l~~~~~L~~l~l~~n~l~~~ 626 (641)
+|+|++|.+++. ++.....+++|+.|++++|++++.
T Consensus 492 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred eeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 777777776544 333334566677777777776654
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.5e-28 Score=243.69 Aligned_cols=218 Identities=18% Similarity=0.227 Sum_probs=133.9
Q ss_pred CcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCC
Q 036117 382 PPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSK 461 (641)
Q Consensus 382 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 461 (641)
|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..+..+++|++|++++|++.+.+|..+....
T Consensus 97 p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 174 (328)
T 4fcg_A 97 PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174 (328)
T ss_dssp CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence 444444555555555555555 44555555555555555555555 4455555555555555555555444444332200
Q ss_pred CCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCC
Q 036117 462 SDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDL 541 (641)
Q Consensus 462 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 541 (641)
.+..+..+++|+.|++++|++. .+|..+.++++|++|++++|++.+ +|..++.+++|
T Consensus 175 ---------------------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L 231 (328)
T 4fcg_A 175 ---------------------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL 231 (328)
T ss_dssp ----------------------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC
T ss_pred ---------------------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC
Confidence 0111233666677777766666 666666667777777777777664 44456667777
Q ss_pred cEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCC
Q 036117 542 QYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRN 621 (641)
Q Consensus 542 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n 621 (641)
++|++++|++.+.+|..++.+++|++|++++|++.+.+|..++++++|++|+|++|++.+.+|..+..+++|+.+++..+
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777665
Q ss_pred CCc
Q 036117 622 QLS 624 (641)
Q Consensus 622 ~l~ 624 (641)
.+.
T Consensus 312 ~~~ 314 (328)
T 4fcg_A 312 LQA 314 (328)
T ss_dssp GSC
T ss_pred HHH
Confidence 543
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.8e-27 Score=237.77 Aligned_cols=244 Identities=18% Similarity=0.111 Sum_probs=188.4
Q ss_pred CCCCCCCCEEEccCCcCcCC--chhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCC-cchhcCC
Q 036117 385 IGLLPKLEYLYLFDNKFSGP--IPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLP-PEIGNSK 461 (641)
Q Consensus 385 l~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~ 461 (641)
+..+++|++|++++|+++.. .+..+..+++|++|++++|.+. .++..+..+++|++|++++|.+.+..+ ..+..+.
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 126 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhcc
Confidence 45666777777777766632 2455667778888888888776 456667778888888888887764433 3455555
Q ss_pred CCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccC-CCccccccCCCCcEEECCCCcCccccCcccCCCCC
Q 036117 462 SDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVG-PIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPD 540 (641)
Q Consensus 462 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 540 (641)
+|++|++++|.+.+..+..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+.+..+..++.+++
T Consensus 127 ------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 127 ------NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200 (306)
T ss_dssp ------TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ------CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence 78888888888877777778888888888888888876 57778888999999999999998888888889999
Q ss_pred CcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCC-CCCEEeCCCCcCcccCCc-ccc-CCCCCCEEe
Q 036117 541 LQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLT-YLQNLDIFDNQLTGKIPA-QLF-RSSFLIRLN 617 (641)
Q Consensus 541 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~ip~-~l~-~~~~L~~l~ 617 (641)
|++|++++|++++..+..+..+++|++|++++|++.+..|..+..++ +|++|++++|++.+..+. ++. -+...+.+.
T Consensus 201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~ 280 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 280 (306)
T ss_dssp CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGB
T ss_pred CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhh
Confidence 99999999999888777888899999999999999988888888884 899999999999865321 111 224455567
Q ss_pred CcCCCCcccCcccccCCC
Q 036117 618 LRRNQLSDKIPAEIGKLS 635 (641)
Q Consensus 618 l~~n~l~~~~p~~~~~l~ 635 (641)
+..+.+....|..+.+.+
T Consensus 281 ~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 281 VEVERMECATPSDKQGMP 298 (306)
T ss_dssp SCGGGCBEEESGGGTTCB
T ss_pred ccccccccCCchhhCCce
Confidence 777888888888877754
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.2e-27 Score=235.09 Aligned_cols=232 Identities=21% Similarity=0.166 Sum_probs=208.9
Q ss_pred CCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCcc--CcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCC
Q 036117 389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGS--IPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGP 466 (641)
Q Consensus 389 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~ 466 (641)
+++++|++++|++++..+..|..+++|++|++++|.+... .+..+..+++|++|++++|.+. .+|..+..++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~----- 101 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE----- 101 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCT-----
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCC-----
Confidence 6899999999999966666689999999999999999833 3566778999999999999987 5666677777
Q ss_pred CCccEEEccCCcccccCC-ccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCcc-ccCcccCCCCCCcEE
Q 036117 467 RFLRNVSFSYNNFSGKLP-PGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDG-DITNALGIYPDLQYI 544 (641)
Q Consensus 467 ~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L 544 (641)
+|++|++++|.+++..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|
T Consensus 102 -~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 102 -QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp -TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred -CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 89999999999986554 578899999999999999998888899999999999999999987 678889999999999
Q ss_pred eCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCC-CCCCEEeCcCCCC
Q 036117 545 DLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRLNLRRNQL 623 (641)
Q Consensus 545 ~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~-~~L~~l~l~~n~l 623 (641)
++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+ ++|+.|++++|++
T Consensus 181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 999999999989999999999999999999998877789999999999999999999899888888 4999999999999
Q ss_pred cccC
Q 036117 624 SDKI 627 (641)
Q Consensus 624 ~~~~ 627 (641)
++..
T Consensus 261 ~~~c 264 (306)
T 2z66_A 261 ACTC 264 (306)
T ss_dssp ECSG
T ss_pred eccc
Confidence 8653
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=244.56 Aligned_cols=279 Identities=19% Similarity=0.176 Sum_probs=209.0
Q ss_pred CCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCC
Q 036117 303 LRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLP 382 (641)
Q Consensus 303 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~ 382 (641)
++.....+.+++.+.. +|..+. ++|++|++++|++++..+..+..+++|++|++++|.++. ..+
T Consensus 30 C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------------~~~ 93 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-------------IEE 93 (353)
T ss_dssp ECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-------------ECT
T ss_pred CCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-------------cCH
Confidence 3444557777777754 444433 589999999999987666688888999998866665543 345
Q ss_pred cCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCc-ccccCCCCCCEEEccCCc-CcccCCcchhcC
Q 036117 383 PEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIP-STIGNLSSLVKLSLSSNQ-LTGTLPPEIGNS 460 (641)
Q Consensus 383 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~ls~n~-l~~~~~~~~~~~ 460 (641)
..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|. +.+..+..+..+
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 173 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence 668888999999999999987777678889999999999998884333 368889999999999984 655556667666
Q ss_pred CCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCccc---CC
Q 036117 461 KSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNAL---GI 537 (641)
Q Consensus 461 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~---~~ 537 (641)
. +|++|++++|.+++..|..+..+++|+.|++++|++....+..+..+++|++|++++|.+.+..+..+ ..
T Consensus 174 ~------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 174 T------FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp C------EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred C------CCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccc
Confidence 6 89999999999888888888888889999998888753333334567888888888888876554433 24
Q ss_pred CCCCcEEeCCCCcccc----cCChhhhcCCCCCEEeCcCCcCcccCCcc-ccCCCCCCEEeCCCCcCcccCC
Q 036117 538 YPDLQYIDLGDNQLSG----VLTSNWGKCTNLSNFRISGNRIKGGIPAE-LGNLTYLQNLDIFDNQLTGKIP 604 (641)
Q Consensus 538 l~~L~~L~Ls~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~ip 604 (641)
.+.++.++++++.+++ .+|..+..+++|++|++++|+++ .+|.. ++++++|++|++++|++.+..|
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 5667778888877765 35666777888888888888887 45544 5778888888888888876554
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=242.57 Aligned_cols=286 Identities=20% Similarity=0.249 Sum_probs=170.8
Q ss_pred CCCccccceeeCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCC
Q 036117 49 SGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPI 128 (641)
Q Consensus 49 ~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 128 (641)
..+|.|.|+ |+ .++++++ .+| ..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 27 ~~~C~~~~~-c~---------~~~~~l~-~iP-~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (353)
T 2z80_A 27 SLSCDRNGI-CK---------GSSGSLN-SIP-SGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92 (353)
T ss_dssp CCEECTTSE-EE---------CCSTTCS-SCC-TTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred CCCCCCCeE-ee---------CCCCCcc-ccc-ccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC
Confidence 457889887 53 3444444 334 222 247788888888777655556777777777777777777666
Q ss_pred ccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCC-cccCCCCCCCEEEcCCCCCCCCchhhcCCC
Q 036117 129 PPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDP-VKFKGMASLTDLWLDYNLLEKFPSFIAECS 207 (641)
Q Consensus 129 p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~ 207 (641)
|..|+++++|++|++++|.+++..+..+.++++|++|++++|.+..... . .+..++
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-----------------------~~~~l~ 149 (353)
T 2z80_A 93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETS-----------------------LFSHLT 149 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSC-----------------------SCTTCT
T ss_pred HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchh-----------------------hhccCC
Confidence 6667777777777777777765444445666666666666555554333 2 344455
Q ss_pred CCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeee
Q 036117 208 KLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEF 287 (641)
Q Consensus 208 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l 287 (641)
+|++|++++|...+.++...+..+++|++|++++|.+++..|..+..+++|++|++++|.+.......+..+++|++|++
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 229 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEE
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEEC
Confidence 55555555553222333334455666666666666666555566666666666666666654222222334566666666
Q ss_pred ecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccc----cCchhhhcCCCCCeEeCCccc
Q 036117 288 HENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTG----SLPLSLASLRQISELGISNNQ 363 (641)
Q Consensus 288 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~----~~~~~l~~~~~L~~L~l~~n~ 363 (641)
++|.+.+..+..+.. ....+.++.++++++.+.+ .+|..+..+++|++|++++|+
T Consensus 230 ~~n~l~~~~~~~l~~---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 230 RDTDLDTFHFSELST---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp ESCBCTTCCCC---------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred CCCcccccccccccc---------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 666655433221110 1223456666666666654 356677778888888877666
Q ss_pred ccccceeecccccccccCCcC-CCCCCCCCEEEccCCcCcCCch
Q 036117 364 LSEIISLQLQMNDLSGKLPPE-IGLLPKLEYLYLFDNKFSGPIP 406 (641)
Q Consensus 364 ~~~l~~l~l~~~~l~~~~~~~-l~~~~~L~~L~L~~n~l~~~~~ 406 (641)
++. +|.. +..+++|++|++++|.+.+..|
T Consensus 289 l~~--------------i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 289 LKS--------------VPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCC--------------CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCc--------------cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 543 3333 4678888888888888887654
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.7e-26 Score=228.04 Aligned_cols=238 Identities=19% Similarity=0.170 Sum_probs=171.4
Q ss_pred CCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCc-CcccCCcchhcCCCCCCCC
Q 036117 389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQ-LTGTLPPEIGNSKSDFGPR 467 (641)
Q Consensus 389 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~~~~ 467 (641)
+++++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|. +....|..+..+.
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~------ 105 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG------ 105 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT------
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc------
Confidence 566777777777766555666677777777777777766556667777777777777775 5544455555555
Q ss_pred CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCC
Q 036117 468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLG 547 (641)
Q Consensus 468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 547 (641)
+|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++.+..+..+..+++|+.|+++
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence 67777777777776666667777778888888877776666667778888888888888876666667788888888888
Q ss_pred CCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccC
Q 036117 548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKI 627 (641)
Q Consensus 548 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~ 627 (641)
+|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++....+.. .....++.+..+.+.+....
T Consensus 186 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~ 264 (285)
T 1ozn_A 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSL 264 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEE
T ss_pred CCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCC
Confidence 88888777888888888888888888888666666788888888888888887544321 12234555667777887778
Q ss_pred cccccC
Q 036117 628 PAEIGK 633 (641)
Q Consensus 628 p~~~~~ 633 (641)
|..+..
T Consensus 265 p~~l~g 270 (285)
T 1ozn_A 265 PQRLAG 270 (285)
T ss_dssp SGGGTT
T ss_pred chHhCC
Confidence 776655
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=6e-26 Score=239.50 Aligned_cols=228 Identities=25% Similarity=0.230 Sum_probs=111.9
Q ss_pred CCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEe
Q 036117 88 PNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRI 167 (641)
Q Consensus 88 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 167 (641)
+++++|+|++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 35555555555555555555555555555555555555544455555555555555555555444444555555555555
Q ss_pred ccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccccc
Q 036117 168 GANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGE 247 (641)
Q Consensus 168 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 247 (641)
++|.+..+....|.++++ |++|++++|...+.++...+..+++|++|++++|.+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~-----------------------L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPS-----------------------LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp CSCCCCEECTTTTTTCTT-----------------------CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CCCCcceeCHhHHhcCCc-----------------------ccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 555544444444444444 44444444333223333334445555555555555442
Q ss_pred CCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCC
Q 036117 248 IPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFC 327 (641)
Q Consensus 248 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 327 (641)
+| .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 22 24444455555555555544444444444445555554444444444444444444444444444444333344444
Q ss_pred CCCCEEEccCccc
Q 036117 328 ANLTFLELSINNL 340 (641)
Q Consensus 328 ~~L~~L~l~~n~l 340 (641)
++|+.|++++|.+
T Consensus 290 ~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 290 RYLVELHLHHNPW 302 (452)
T ss_dssp TTCCEEECCSSCE
T ss_pred cCCCEEEccCCCc
Confidence 4444455444443
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=8.8e-30 Score=279.40 Aligned_cols=421 Identities=13% Similarity=0.090 Sum_probs=225.1
Q ss_pred ccCCCCCCCEEEcCCCCC-C---CC------------chhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCC
Q 036117 179 KFKGMASLTDLWLDYNLL-E---KF------------PSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN 242 (641)
Q Consensus 179 ~l~~l~~L~~L~l~~~~~-~---~l------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n 242 (641)
.+..+++|++|+++++.. . -. +.....+++|++|++++|.+.+.........+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 345567778887777642 1 11 1223456677777777776654333333235677777777776
Q ss_pred -ccccc-CCcccCCCCCCCEEEcCCCcCCccCCccc----CCCCcccEeeeeccc--cccc-CccccCCCCCCCeeeccC
Q 036117 243 -SFEGE-IPREIKTFPKLRHLKLGQNKLTGTIPDEI----GLLSNLEILEFHENL--FHGL-IPSSLGNLRRLQRLNLKS 313 (641)
Q Consensus 243 -~~~~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~l----~~~~~L~~L~l~~n~--~~~~-~~~~l~~l~~L~~L~l~~ 313 (641)
.++.. ++..+..+++|++|++++|.+++..+..+ ..+++|++|++++|. +... +......+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 33322 33333466777777777776654333322 245567777776665 1111 111123356666666666
Q ss_pred ccCCCCCCcCCCCCCCCCEEEccCcc-------ccccCchhhhcCCCCCeE-eCCcccccccceeecccccccccCCcCC
Q 036117 314 AGLNSSIPKELGFCANLTFLELSINN-------LTGSLPLSLASLRQISEL-GISNNQLSEIISLQLQMNDLSGKLPPEI 385 (641)
Q Consensus 314 ~~~~~~~~~~l~~~~~L~~L~l~~n~-------l~~~~~~~l~~~~~L~~L-~l~~n~~~~l~~l~l~~~~l~~~~~~~l 385 (641)
|...+.++..+..+++|++|++..+. +. .++..+..+++|+.+ .+.+.. .+.++..+
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~--------------~~~l~~~~ 285 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAV--------------PAYLPAVY 285 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCC--------------GGGGGGGH
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccc--------------hhhHHHHH
Confidence 62222244445556666666644332 22 233355566666665 222111 11222233
Q ss_pred CCCCCCCEEEccCCcCcCCch-hhhhCCCCCCeEecccCcCCc-cCcccccCCCCCCEEEccC---------CcCcccCC
Q 036117 386 GLLPKLEYLYLFDNKFSGPIP-QQIGNLTNLFDLQLANNFFNG-SIPSTIGNLSSLVKLSLSS---------NQLTGTLP 454 (641)
Q Consensus 386 ~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~ls~---------n~l~~~~~ 454 (641)
..+++|++|++++|.+++... ..+..+++|++|++++| +.+ .++.....+++|++|++++ +.+++...
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 346777788887777654322 22456777777777777 332 2223333467777777743 23332221
Q ss_pred cchh-cCCCCCCCCCccEEEccCCcccccCCcccc-CCCCCceEecc--C----CcccC-----CCccccccCCCCcEEE
Q 036117 455 PEIG-NSKSDFGPRFLRNVSFSYNNFSGKLPPGIC-RGGNLIYLTAN--V----NKLVG-----PIPESLWNCTGLTRVR 521 (641)
Q Consensus 455 ~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~~~L~~L~l~--~----n~~~~-----~~~~~l~~~~~L~~L~ 521 (641)
..+. .++ +|++|.+.++.+++..+..+. .+++|+.|+++ + +.+++ .++..+..+++|+.|+
T Consensus 365 ~~l~~~~~------~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~ 438 (594)
T 2p1m_B 365 VSVSMGCP------KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438 (594)
T ss_dssp HHHHHHCT------TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHhch------hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence 2222 233 677777777766654444443 46777777776 2 23331 1112245567777777
Q ss_pred CCCCcCccccCcccCC-CCCCcEEeCCCCcccccCChhh-hcCCCCCEEeCcCCcCcccCCc-cccCCCCCCEEeCCCCc
Q 036117 522 LEQNRLDGDITNALGI-YPDLQYIDLGDNQLSGVLTSNW-GKCTNLSNFRISGNRIKGGIPA-ELGNLTYLQNLDIFDNQ 598 (641)
Q Consensus 522 l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~ 598 (641)
+++ .+++..+..++. +++|+.|++++|.+++..+..+ ..+++|++|++++|++++..+. ....+++|++|++++|+
T Consensus 439 L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 439 LSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred ecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 765 454444444433 6677777777777665544444 5567777777777776443322 33446677777777777
Q ss_pred CcccCCccc-cCCCCCCEEeCcCCC
Q 036117 599 LTGKIPAQL-FRSSFLIRLNLRRNQ 622 (641)
Q Consensus 599 l~~~ip~~l-~~~~~L~~l~l~~n~ 622 (641)
++......+ ..++.++...+..+.
T Consensus 518 ~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 518 VSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp CBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CCHHHHHHHHHhCCCCEEEEecCCC
Confidence 653333333 234555555555443
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.2e-26 Score=227.30 Aligned_cols=231 Identities=20% Similarity=0.163 Sum_probs=143.9
Q ss_pred CCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCc-CCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCC
Q 036117 384 EIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNF-FNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKS 462 (641)
Q Consensus 384 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 462 (641)
.+..+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..+.
T Consensus 51 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~- 129 (285)
T 1ozn_A 51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA- 129 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-
T ss_pred HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc-
Confidence 34444555555555555554445555555555555555554 4433344555555555555555555544444444444
Q ss_pred CCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCc
Q 036117 463 DFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQ 542 (641)
Q Consensus 463 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 542 (641)
+|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+.+..+..++.+++|+
T Consensus 130 -----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 130 -----ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204 (285)
T ss_dssp -----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred -----CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence 566666666665544444466666777777777777655555677778888888888888877777788888888
Q ss_pred EEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccC--CCCCCEEeCcC
Q 036117 543 YIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFR--SSFLIRLNLRR 620 (641)
Q Consensus 543 ~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~--~~~L~~l~l~~ 620 (641)
.|++++|++++..+..+..+++|++|++++|++.+..+.. .-...++.+..+.+.+.+..|..+.. +..++..++.+
T Consensus 205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~ 283 (285)
T 1ozn_A 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283 (285)
T ss_dssp EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCC
T ss_pred EeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhcc
Confidence 8888888888766667788888888888888876443211 11123455567777787778876654 34555555555
Q ss_pred C
Q 036117 621 N 621 (641)
Q Consensus 621 n 621 (641)
|
T Consensus 284 C 284 (285)
T 1ozn_A 284 C 284 (285)
T ss_dssp C
T ss_pred C
Confidence 4
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.2e-25 Score=236.36 Aligned_cols=244 Identities=23% Similarity=0.230 Sum_probs=139.0
Q ss_pred EEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccc
Q 036117 67 EINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN 146 (641)
Q Consensus 67 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n 146 (641)
.++.++.++. .+| ..+ .+++++|+|++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 47 ~v~c~~~~l~-~iP-~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 47 KVICVRKNLR-EVP-DGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp EEECCSCCCS-SCC-SCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred EEEeCCCCcC-cCC-CCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4444444444 344 222 257888888888888777777888888888888888887766677778888888888888
Q ss_pred cCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCC-CCCCchhhcCCCCCcEEEeeCCcCCCCCCh
Q 036117 147 SLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNL-LEKFPSFIAECSKLMFLDLSDNLIMGHIPI 225 (641)
Q Consensus 147 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~-~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~ 225 (641)
.+++..+..|..+++|++|++++|.+.......|..+++|++|++++|. +..+ +.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i------------------------~~ 178 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI------------------------SE 178 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE------------------------CT
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee------------------------Cc
Confidence 7776655667777777777777777766665566666666666665532 2333 32
Q ss_pred hhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCC
Q 036117 226 EQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRR 305 (641)
Q Consensus 226 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~ 305 (641)
..|.++++|++|++++|.++ .+| .+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred chhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence 33344444444444444443 222 2344444444444444444444444444444444444444444444444444444
Q ss_pred CCeeeccCccCCCCCCcCCCCCCCCCEEEccCccc
Q 036117 306 LQRLNLKSAGLNSSIPKELGFCANLTFLELSINNL 340 (641)
Q Consensus 306 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l 340 (641)
|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 44444444444443333344444444444444443
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.7e-27 Score=238.86 Aligned_cols=267 Identities=17% Similarity=0.189 Sum_probs=158.3
Q ss_pred CCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhh
Q 036117 330 LTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI 409 (641)
Q Consensus 330 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~ 409 (641)
++..+++.+.+.......+..+++|++|++++|.++ +..|..+..+++|++|++++|++++..+ +
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~ 76 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-------------QISAADLAPFTKLELLNLSSNVLYETLD--L 76 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-------------CCCHHHHTTCTTCCEEECTTSCCEEEEE--E
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-------------cCCHHHhhCCCcCCEEECCCCcCCcchh--h
Confidence 344444444444333344444556666664444433 2333455666677777777776665443 6
Q ss_pred hCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccC
Q 036117 410 GNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICR 489 (641)
Q Consensus 410 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 489 (641)
..+++|++|++++|.+++. + ..++|++|++++|.+++..+.. +. +|++|++++|++++..+..+..
T Consensus 77 ~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~~---~~------~L~~L~l~~N~l~~~~~~~~~~ 142 (317)
T 3o53_A 77 ESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAANNNISRVSCSR---GQ------GKKNIYLANNKITMLRDLDEGC 142 (317)
T ss_dssp TTCTTCCEEECCSSEEEEE-E----ECTTCCEEECCSSCCSEEEECC---CS------SCEEEECCSSCCCSGGGBCTGG
T ss_pred hhcCCCCEEECcCCccccc-c----CCCCcCEEECCCCccCCcCccc---cC------CCCEEECCCCCCCCccchhhhc
Confidence 6667777777777766532 2 2366777777777666443221 22 5677777777766555556666
Q ss_pred CCCCceEeccCCcccCCCcccc-ccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEE
Q 036117 490 GGNLIYLTANVNKLVGPIPESL-WNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNF 568 (641)
Q Consensus 490 ~~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L 568 (641)
++.|+.|++++|++.+..+..+ ..+++|++|++++|.+.+.. ....+++|++|++++|++++..+ .+..+++|++|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L 219 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWI 219 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEE
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhcccCcccEE
Confidence 6677777777776665555544 35666777777777666442 22346667777777777664433 36666677777
Q ss_pred eCcCCcCcccCCccccCCCCCCEEeCCCCcCc-ccCCccccCCCCCCEEeCcCC-CCcccCcc
Q 036117 569 RISGNRIKGGIPAELGNLTYLQNLDIFDNQLT-GKIPAQLFRSSFLIRLNLRRN-QLSDKIPA 629 (641)
Q Consensus 569 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~ip~~l~~~~~L~~l~l~~n-~l~~~~p~ 629 (641)
++++|+++ .+|..+..+++|+.|++++|++. +.+|..+..++.|+.+++++| .+.|..|.
T Consensus 220 ~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp ECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 77777666 45566666677777777777766 556666666666666666633 34444443
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.6e-25 Score=236.15 Aligned_cols=248 Identities=17% Similarity=0.155 Sum_probs=163.0
Q ss_pred CCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhh
Q 036117 330 LTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI 409 (641)
Q Consensus 330 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~ 409 (641)
...++.++..++ .+|..+. +.++.|++++|.+ .+..+..+..+++|++|++++|++++..+..|
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i-------------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 119 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNI-------------QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF 119 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCC-------------CEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcC-------------ceECHHHcCCCCCCCEEECCCCccCCcChhhc
Confidence 466777766666 4554432 4566666444443 33445666777777777777777776666777
Q ss_pred hCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCc-ccc
Q 036117 410 GNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPP-GIC 488 (641)
Q Consensus 410 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~ 488 (641)
..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|...+.++. .+.
T Consensus 120 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~l~~~~~l~~i~~~~~~ 193 (452)
T 3zyi_A 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP------SLMRLDLGELKKLEYISEGAFE 193 (452)
T ss_dssp TTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT------TCCEEECCCCTTCCEECTTTTT
T ss_pred cCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC------cccEEeCCCCCCccccChhhcc
Confidence 7777777777777777755555677777777777777777654444555555 677777777443333333 466
Q ss_pred CCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEE
Q 036117 489 RGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNF 568 (641)
Q Consensus 489 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L 568 (641)
.+++|+.|++++|++.+. | .+..+++|++|++++|++.+..+..|..+++|+.|++++|++++..+..+..+++|++|
T Consensus 194 ~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 194 GLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp TCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence 667777777777776632 3 35666677777777777776666667777777777777777776666666777777777
Q ss_pred eCcCCcCcccCCccccCCCCCCEEeCCCCcCcc
Q 036117 569 RISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG 601 (641)
Q Consensus 569 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 601 (641)
+|++|++++..+..+..+++|+.|+|++|++..
T Consensus 272 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp ECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 777777765555666667777777777776653
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.1e-25 Score=234.53 Aligned_cols=249 Identities=18% Similarity=0.145 Sum_probs=178.1
Q ss_pred CCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhh
Q 036117 329 NLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQ 408 (641)
Q Consensus 329 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~ 408 (641)
....++.++..++ .+|..+. +.++.|++++|+++ +..+..+..+++|++|++++|.+++..+..
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-------------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~ 107 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-------------IIKVNSFKHLRHLEILQLSRNHIRTIEIGA 107 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-------------EECTTTTSSCSSCCEEECCSSCCCEECGGG
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-------------eeCHHHhhCCCCCCEEECCCCcCCccChhh
Confidence 3567777777777 5665443 56666665555443 334456777788888888888887777777
Q ss_pred hhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCC-ccc
Q 036117 409 IGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLP-PGI 487 (641)
Q Consensus 409 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~ 487 (641)
|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+. +|++|++++|...+.++ ..+
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~------~L~~L~l~~~~~l~~i~~~~~ 181 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP------SLRRLDLGELKRLSYISEGAF 181 (440)
T ss_dssp GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT------TCCEEECCCCTTCCEECTTTT
T ss_pred ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCc------ccCEeCCCCCCCcceeCcchh
Confidence 88888888888888888755555677788888888888887755555566665 78888888754433443 356
Q ss_pred cCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCE
Q 036117 488 CRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSN 567 (641)
Q Consensus 488 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~ 567 (641)
..+++|+.|++++|++. .+| .+..+++|++|++++|++.+..+..|..+++|+.|++++|++++..+..+..+++|++
T Consensus 182 ~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 259 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259 (440)
T ss_dssp TTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred hcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence 67777888888777776 444 3667777777777777777777777777777777777777777777777777777777
Q ss_pred EeCcCCcCcccCCccccCCCCCCEEeCCCCcCcc
Q 036117 568 FRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG 601 (641)
Q Consensus 568 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 601 (641)
|+|++|++++..+..+..+++|+.|+|++|++..
T Consensus 260 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp EECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred EECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 7777777776666667777777777777777753
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.2e-27 Score=239.43 Aligned_cols=244 Identities=18% Similarity=0.146 Sum_probs=186.0
Q ss_pred cccccccccCCcCCCCCCCCCEEEccCCcCc-CCchhhhh-------CCCCCCeEecccCcCCccCcccc--cCCCCCCE
Q 036117 372 LQMNDLSGKLPPEIGLLPKLEYLYLFDNKFS-GPIPQQIG-------NLTNLFDLQLANNFFNGSIPSTI--GNLSSLVK 441 (641)
Q Consensus 372 l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~ 441 (641)
+++|.+ .+|..+... |+.|++++|.+. ..++..+. .+++|++|++++|.+++.+|..+ ..+++|++
T Consensus 50 l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 125 (312)
T 1wwl_A 50 KRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125 (312)
T ss_dssp HHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSE
T ss_pred eccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccE
Confidence 444444 344433322 777777777773 33444443 67888888998888887777765 78888999
Q ss_pred EEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCC--Ccccc--ccCCCC
Q 036117 442 LSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGP--IPESL--WNCTGL 517 (641)
Q Consensus 442 L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~l--~~~~~L 517 (641)
|++++|.+++. |..+..+.. ...++|++|++++|++++..|..+..+++|+.|++++|++.+. .|..+ ..+++|
T Consensus 126 L~Ls~N~l~~~-~~~~~~l~~-~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L 203 (312)
T 1wwl_A 126 LNLRNVSWATR-DAWLAELQQ-WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203 (312)
T ss_dssp EEEESCBCSSS-SSHHHHHHT-TCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTC
T ss_pred EEccCCCCcch-hHHHHHHHH-hhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCC
Confidence 99999988866 766665510 0012799999999999877778888899999999999987764 23333 788999
Q ss_pred cEEECCCCcCcc---ccCcccCCCCCCcEEeCCCCcccccCC-hhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEe
Q 036117 518 TRVRLEQNRLDG---DITNALGIYPDLQYIDLGDNQLSGVLT-SNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLD 593 (641)
Q Consensus 518 ~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 593 (641)
++|++++|++.+ .....+..+++|++|++++|++++.+| ..+..+++|++|++++|+++ .+|..+. ++|++|+
T Consensus 204 ~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~ 280 (312)
T 1wwl_A 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLD 280 (312)
T ss_dssp CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEE
T ss_pred CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEE
Confidence 999999999883 222445678999999999999998775 45667889999999999998 7787776 8899999
Q ss_pred CCCCcCcccCCccccCCCCCCEEeCcCCCCccc
Q 036117 594 IFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDK 626 (641)
Q Consensus 594 L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~ 626 (641)
+++|++++ +|. +..+++|++|++++|++++.
T Consensus 281 Ls~N~l~~-~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 281 LSYNRLDR-NPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCSSCCCS-CCC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCCCCCCC-Chh-HhhCCCCCEEeccCCCCCCC
Confidence 99999985 476 88899999999999999763
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=9.4e-25 Score=236.00 Aligned_cols=265 Identities=28% Similarity=0.380 Sum_probs=143.0
Q ss_pred cccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCC
Q 036117 281 NLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGIS 360 (641)
Q Consensus 281 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~ 360 (641)
+++.|++++|.++ .+|..+. ++|++|++++|.+.. +|. .+++|++|++++|+++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 4667777777766 3444443 567777777776653 332 3566777777777666 3443 45566666655
Q ss_pred cccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCC
Q 036117 361 NNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLV 440 (641)
Q Consensus 361 ~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 440 (641)
+|+++.+ |. .+++|+.|++++|++++ +|.. +++|++|++++|.+++ +|. .+++|+
T Consensus 110 ~N~l~~l--------------~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~ 164 (622)
T 3g06_A 110 SNPLTHL--------------PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELC 164 (622)
T ss_dssp SCCCCCC--------------CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCC
T ss_pred CCcCCCC--------------CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCC
Confidence 5554432 11 34566666666666653 3322 3566666666666653 332 234566
Q ss_pred EEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEE
Q 036117 441 KLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRV 520 (641)
Q Consensus 441 ~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 520 (641)
.|++++|.+++ +| ..+. +|+.|++++|.+++ +|.. .++|+.|++++|.+. .+|.. +++|+.|
T Consensus 165 ~L~L~~N~l~~-l~---~~~~------~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L 226 (622)
T 3g06_A 165 KLWAYNNQLTS-LP---MLPS------GLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKEL 226 (622)
T ss_dssp EEECCSSCCSC-CC---CCCT------TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEE
T ss_pred EEECCCCCCCC-Cc---ccCC------CCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEE
Confidence 66666666652 33 1112 56666666666552 3321 245556666665555 23321 2455555
Q ss_pred ECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCc
Q 036117 521 RLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT 600 (641)
Q Consensus 521 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 600 (641)
++++|++++ +| ..+++|+.|++++|+++. +|. .+++|+.|++++|+++ .+|..+.++++|+.|+|++|+++
T Consensus 227 ~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 227 IVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp ECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred EccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 666555553 22 334555555555555552 232 3455555555555555 44555555555555555555555
Q ss_pred ccCCcccc
Q 036117 601 GKIPAQLF 608 (641)
Q Consensus 601 ~~ip~~l~ 608 (641)
+.+|..+.
T Consensus 298 ~~~~~~l~ 305 (622)
T 3g06_A 298 ERTLQALR 305 (622)
T ss_dssp HHHHHHHH
T ss_pred CcCHHHHH
Confidence 55554444
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.6e-27 Score=237.47 Aligned_cols=239 Identities=20% Similarity=0.165 Sum_probs=131.0
Q ss_pred CCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcC
Q 036117 324 LGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSG 403 (641)
Q Consensus 324 l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 403 (641)
+..+++|++|++++|++++..|..+..+++|++|++++|.++.. . .+..+++|++|++++|++++
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------------~--~~~~l~~L~~L~Ls~n~l~~ 94 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-------------L--DLESLSTLRTLDLNNNYVQE 94 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-------------E--EETTCTTCCEEECCSSEEEE
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-------------h--hhhhcCCCCEEECcCCcccc
Confidence 33445666666666666655555566666666666555544322 1 14445566666666665553
Q ss_pred CchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccC
Q 036117 404 PIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKL 483 (641)
Q Consensus 404 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 483 (641)
.. ..++|++|++++|.+.+..+. .+++|++|++++|.+++..+..+..+. +|++|++++|.+++..
T Consensus 95 l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 95 LL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRS------RVQYLDLKLNEIDTVN 160 (317)
T ss_dssp EE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGS------SEEEEECTTSCCCEEE
T ss_pred cc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccC------CCCEEECCCCCCCccc
Confidence 22 225666666666666543322 245566666666666544444444444 5666666666665544
Q ss_pred Ccccc-CCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcC
Q 036117 484 PPGIC-RGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKC 562 (641)
Q Consensus 484 ~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l 562 (641)
+..+. .++.|+.|++++|++.+. + ....+++|++|++++|++.+.. ..+..+++|+.|++++|+++ .+|..+..+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 44442 456666666666665533 2 1223556666666666665432 23555666666666666665 344455556
Q ss_pred CCCCEEeCcCCcCc-ccCCccccCCCCCCEEeCC
Q 036117 563 TNLSNFRISGNRIK-GGIPAELGNLTYLQNLDIF 595 (641)
Q Consensus 563 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~ 595 (641)
++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 66666666666665 4555555666666666665
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=7.1e-25 Score=214.40 Aligned_cols=216 Identities=24% Similarity=0.309 Sum_probs=163.6
Q ss_pred CCCccccceeeCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCC
Q 036117 49 SGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPI 128 (641)
Q Consensus 49 ~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 128 (641)
.++|.|.|+.|...+..+.++++++.++ .+| ..+. +++++|++++|.+.+..+..|..+++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~-~ip-~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLT-AIP-SNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCS-SCC-SCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCC-ccC-CCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 4789999999876667788999998887 355 3332 67899999999988766678888999999999999988655
Q ss_pred ccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchh-hcCCC
Q 036117 129 PPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSF-IAECS 207 (641)
Q Consensus 129 p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-l~~~~ 207 (641)
+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+....+..|..+++|++|++++|.+..++.. +..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 55668889999999999988877777788888888888888888888777788888888888888887766653 56677
Q ss_pred CCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCC
Q 036117 208 KLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT 269 (641)
Q Consensus 208 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~ 269 (641)
+|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 158 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 158 SLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccceeEecCCcCc-EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 7777777777766 344444566666777777776666544445666666666666666554
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.3e-26 Score=245.83 Aligned_cols=228 Identities=20% Similarity=0.145 Sum_probs=109.4
Q ss_pred CCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCC
Q 036117 389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRF 468 (641)
Q Consensus 389 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~ 468 (641)
++|++|++++|.+++..|..|..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ .+ +
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~------~ 100 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GP------S 100 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CT------T
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CC------C
Confidence 345555555555554444445555555555555555543332 4445555555555554442111 11 4
Q ss_pred ccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccC-CCCCCcEEeCC
Q 036117 469 LRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALG-IYPDLQYIDLG 547 (641)
Q Consensus 469 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls 547 (641)
|++|++++|.+++..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|+++
T Consensus 101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 55555555555433221 234455555555555544444455555555555555555554444443 45555555555
Q ss_pred CCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCc-cc
Q 036117 548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLS-DK 626 (641)
Q Consensus 548 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~-~~ 626 (641)
+|.+++..+ +..+++|++|++++|.+++. |..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.
T Consensus 178 ~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 178 YNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp TSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred CCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence 555554422 22345555555555555532 2234555555555555555542 4444455555555555555554 44
Q ss_pred CcccccCCCC
Q 036117 627 IPAEIGKLSR 636 (641)
Q Consensus 627 ~p~~~~~l~~ 636 (641)
+|..+..++.
T Consensus 254 ~~~~~~~l~~ 263 (487)
T 3oja_A 254 LRDFFSKNQR 263 (487)
T ss_dssp HHHHHTTCHH
T ss_pred hHHHHHhCCC
Confidence 4444444433
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=3.3e-27 Score=236.09 Aligned_cols=240 Identities=21% Similarity=0.242 Sum_probs=203.6
Q ss_pred CCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCC-ccCccccc-------CCCCCCEEEccCCcCcccCCcch
Q 036117 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN-GSIPSTIG-------NLSSLVKLSLSSNQLTGTLPPEI 457 (641)
Q Consensus 386 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~-------~l~~L~~L~ls~n~l~~~~~~~~ 457 (641)
+..++|+++++++|.+ .+|..+... |+.|++++|.+. ..++..+. .+++|++|++++|.+++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4457899999999999 667666543 999999999984 45666555 78999999999999999898876
Q ss_pred --hcCCCCCCCCCccEEEccCCcccccCCccccCC-----CCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccc
Q 036117 458 --GNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG-----GNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGD 530 (641)
Q Consensus 458 --~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 530 (641)
..++ +|++|++++|++++. |..+..+ ++|++|++++|++.+..|..+.++++|++|++++|++.+.
T Consensus 116 ~~~~l~------~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 116 LEATGP------DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp SSCCSC------CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred HHhcCC------CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence 6666 899999999999976 7777766 8999999999999988889999999999999999998765
Q ss_pred --cCccc--CCCCCCcEEeCCCCccccc---CChhhhcCCCCCEEeCcCCcCcccCC-ccccCCCCCCEEeCCCCcCccc
Q 036117 531 --ITNAL--GIYPDLQYIDLGDNQLSGV---LTSNWGKCTNLSNFRISGNRIKGGIP-AELGNLTYLQNLDIFDNQLTGK 602 (641)
Q Consensus 531 --~~~~~--~~l~~L~~L~Ls~n~~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~ 602 (641)
.+..+ +.+++|++|++++|++++. ....+..+++|++|++++|++++..| ..+..+++|++|++++|.++ .
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 267 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-Q 267 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-S
T ss_pred hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-h
Confidence 23334 8899999999999999832 22344678999999999999998775 55677899999999999998 8
Q ss_pred CCccccCCCCCCEEeCcCCCCcccCcccccCCCCCcCCC
Q 036117 603 IPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641 (641)
Q Consensus 603 ip~~l~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~l~ 641 (641)
+|..+. ++|+.|++++|++++. |. ++.+++|+.||
T Consensus 268 ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~ 302 (312)
T 1wwl_A 268 VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLS 302 (312)
T ss_dssp CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEE
T ss_pred hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEe
Confidence 998877 8999999999999976 76 88999988764
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.9e-28 Score=268.88 Aligned_cols=424 Identities=13% Similarity=0.090 Sum_probs=290.2
Q ss_pred hccCCCCCcEEEeccccCC-CC--CC------------cccCCCCCCCEEEcCCCCCCCC-chhhc-CCCCCcEEEeeCC
Q 036117 155 QLSNLQNAWLLRIGANYLE-DP--DP------------VKFKGMASLTDLWLDYNLLEKF-PSFIA-ECSKLMFLDLSDN 217 (641)
Q Consensus 155 ~l~~l~~L~~L~l~~n~~~-~~--~~------------~~l~~l~~L~~L~l~~~~~~~l-~~~l~-~~~~L~~L~l~~~ 217 (641)
.+..+++|++|+++++... +. .+ .....+++|++|++++|.+... +..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 4567889999999987521 11 11 1124578999999999987432 33443 6899999999999
Q ss_pred -cCCCCCChhhhcCCCCCcEEeccCCcccccCCccc----CCCCCCCEEEcCCCc--CCcc-CCcccCCCCcccEeeeec
Q 036117 218 -LIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREI----KTFPKLRHLKLGQNK--LTGT-IPDEIGLLSNLEILEFHE 289 (641)
Q Consensus 218 -~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l----~~l~~L~~L~L~~~~--l~~~-~~~~l~~~~~L~~L~l~~ 289 (641)
.+..........++++|++|++++|.+++..+.++ ..+++|++|++++|. +... +......+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 44422223444679999999999999776554444 367899999999986 2211 111124579999999999
Q ss_pred ccccccCccccCCCCCCCeeeccCccC-------CCCCCcCCCCCCCCCEE-EccCccccccCchhhhcCCCCCeEeCCc
Q 036117 290 NLFHGLIPSSLGNLRRLQRLNLKSAGL-------NSSIPKELGFCANLTFL-ELSINNLTGSLPLSLASLRQISELGISN 361 (641)
Q Consensus 290 n~~~~~~~~~l~~l~~L~~L~l~~~~~-------~~~~~~~l~~~~~L~~L-~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 361 (641)
|...+.++..+..+++|++|++..+.. .+ ++..+..+++|+.+ .+.+... +.++..+..+++|++|++++
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~ 298 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSY 298 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTT
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccC
Confidence 843334677778889999999765532 12 23356788999998 4443322 34555566789999999888
Q ss_pred ccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCC-chhhhhCCCCCCeEeccc---------CcCCccCcc
Q 036117 362 NQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGP-IPQQIGNLTNLFDLQLAN---------NFFNGSIPS 431 (641)
Q Consensus 362 n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~---------n~l~~~~~~ 431 (641)
|.++.. .+...+..+++|++|++++| +++. ++.....+++|++|++.+ +.+++....
T Consensus 299 ~~l~~~------------~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 299 ATVQSY------------DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp CCCCHH------------HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred CCCCHH------------HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 764421 11123457899999999988 4433 233334689999999944 344433222
Q ss_pred cc-cCCCCCCEEEccCCcCcccCCcchh-cCCCCCCCCCccEEEcc--C----Ccccc-----cCCccccCCCCCceEec
Q 036117 432 TI-GNLSSLVKLSLSSNQLTGTLPPEIG-NSKSDFGPRFLRNVSFS--Y----NNFSG-----KLPPGICRGGNLIYLTA 498 (641)
Q Consensus 432 ~l-~~l~~L~~L~ls~n~l~~~~~~~~~-~~~~~~~~~~L~~L~ls--~----n~l~~-----~~~~~~~~~~~L~~L~l 498 (641)
.+ ..+++|++|+++.+.+++..+..+. .++ +|++|+++ + +.+++ .++..+..+++|+.|++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~------~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRP------NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCT------TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCC------CcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 23 3489999999988888766555554 355 89999999 3 44542 12223567889999999
Q ss_pred cCCcccCCCcccccc-CCCCcEEECCCCcCccccCccc-CCCCCCcEEeCCCCcccccCCh-hhhcCCCCCEEeCcCCcC
Q 036117 499 NVNKLVGPIPESLWN-CTGLTRVRLEQNRLDGDITNAL-GIYPDLQYIDLGDNQLSGVLTS-NWGKCTNLSNFRISGNRI 575 (641)
Q Consensus 499 ~~n~~~~~~~~~l~~-~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~~~-~~~~l~~L~~L~L~~n~l 575 (641)
++ .+.+..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|++++..+. ....+++|++|++++|++
T Consensus 440 ~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 440 SG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 77 665555555555 8999999999999876555444 5689999999999999765444 345689999999999998
Q ss_pred cccCCccc-cCCCCCCEEeCCCCcCc
Q 036117 576 KGGIPAEL-GNLTYLQNLDIFDNQLT 600 (641)
Q Consensus 576 ~~~~p~~l-~~l~~L~~L~L~~n~l~ 600 (641)
+......+ ..++.++...+..+...
T Consensus 519 ~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 519 SFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp BHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred CHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 64433444 56788877777766544
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.1e-24 Score=233.27 Aligned_cols=281 Identities=27% Similarity=0.280 Sum_probs=148.4
Q ss_pred CCCccccceeeC-------CCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCC
Q 036117 49 SGPCNWNGIQCN-------EVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSS 121 (641)
Q Consensus 49 ~~~c~~~gv~c~-------~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~ 121 (641)
.++|.|+|..|. ....++.++++++++. .+| ..+. ++|++|++++|.++ .+|. .+++|++|++++
T Consensus 19 ~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp-~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~ 90 (622)
T 3g06_A 19 APAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLP-DCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSG 90 (622)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCC-SCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECS
T ss_pred CCcchhccccccCcccccccCCCCcEEEecCCCcC-ccC-hhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCC
Confidence 467888664321 0234677777777776 444 3332 67777777777766 3444 456677777777
Q ss_pred CcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCch
Q 036117 122 NNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS 201 (641)
Q Consensus 122 n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 201 (641)
|.++ .+|. .+++|++|++++|.+++. |. .+++|++|++++|.++.++. .+++|++|++++|.+..+|.
T Consensus 91 N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~ 158 (622)
T 3g06_A 91 NQLT-SLPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA 158 (622)
T ss_dssp CCCS-CCCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC
T ss_pred CcCC-cCCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcCC
Confidence 7766 3444 456677777776666642 22 44556666666665554332 12555555555555554443
Q ss_pred hhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCc
Q 036117 202 FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSN 281 (641)
Q Consensus 202 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~ 281 (641)
.+++|+.|++++|.+. .++ ..+++|+.|++++|.+++ +|. . .++
T Consensus 159 ---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~---~------------------------~~~ 202 (622)
T 3g06_A 159 ---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPT---L------------------------PSE 202 (622)
T ss_dssp ---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC---C------------------------CTT
T ss_pred ---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCC---c------------------------cch
Confidence 2234555555555544 233 223444455555444442 222 1 244
Q ss_pred ccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCc
Q 036117 282 LEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISN 361 (641)
Q Consensus 282 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 361 (641)
|+.|++++|.+... |. .+++|++|++++|.+.+ +| ..+++|+.|++++|+++ .+|. .+++|+.|++++
T Consensus 203 L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~ 270 (622)
T 3g06_A 203 LYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYR 270 (622)
T ss_dssp CCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred hhEEECcCCccccc-CC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCC
Confidence 45555555544422 21 12455555555555543 22 23355666666666555 3333 345555555444
Q ss_pred ccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhC
Q 036117 362 NQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGN 411 (641)
Q Consensus 362 n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~ 411 (641)
|+++ .+|..+..+++|+.|++++|.+++..+..+..
T Consensus 271 N~L~--------------~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 271 NQLT--------------RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp SCCC--------------SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred CCCC--------------cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 4433 23455556666777777777766666655543
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.9e-25 Score=236.91 Aligned_cols=217 Identities=17% Similarity=0.189 Sum_probs=146.0
Q ss_pred cCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCC
Q 036117 383 PEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKS 462 (641)
Q Consensus 383 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 462 (641)
..+..+++|++|++++|.+++..| +..+++|++|++++|.+++. + ..++|++|++++|.+++..+.. ++
T Consensus 52 ~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L~~N~l~~~~~~~---l~- 120 (487)
T 3oja_A 52 ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAANNNISRVSCSR---GQ- 120 (487)
T ss_dssp GGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEECCSSCCCCEEECC---CS-
T ss_pred HHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEECcCCcCCCCCccc---cC-
Confidence 344455555555555555554433 55555566666666555532 1 1256666666666665433221 12
Q ss_pred CCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccc-cCCCCcEEECCCCcCccccCcccCCCCCC
Q 036117 463 DFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLW-NCTGLTRVRLEQNRLDGDITNALGIYPDL 541 (641)
Q Consensus 463 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 541 (641)
+|++|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+++..+ ...+++|
T Consensus 121 -----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L 193 (487)
T 3oja_A 121 -----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKL 193 (487)
T ss_dssp -----SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTC
T ss_pred -----CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCC
Confidence 577777777777666666667777777777777777776666665 67888888888888876532 3357888
Q ss_pred cEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCc-ccCCccccCCCCCCEEeCc
Q 036117 542 QYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT-GKIPAQLFRSSFLIRLNLR 619 (641)
Q Consensus 542 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~ip~~l~~~~~L~~l~l~ 619 (641)
+.|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 194 ~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 194 KTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 888888888886544 47788888888888888874 6777888888888888888887 5677777777777777775
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.2e-23 Score=204.75 Aligned_cols=209 Identities=18% Similarity=0.137 Sum_probs=136.8
Q ss_pred CCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCC
Q 036117 389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRF 468 (641)
Q Consensus 389 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~ 468 (641)
++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+. +
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS------S 101 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT------T
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc------c
Confidence 4688888888888766666777788888888888887766666677777888888888877766656666655 6
Q ss_pred ccEEEccCCcccccCCccccCCCCCceEeccCCcccC-CCccccccCCCCcEEECCCCcCccccCcccCCCCCCc----E
Q 036117 469 LRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVG-PIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQ----Y 543 (641)
Q Consensus 469 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~ 543 (641)
|++|++++|.+.+..+..+..+++|+.|++++|++.+ .+|..+.++++|++|++++|++.+..+..+..+++|+ .
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence 7777777777765544456666666666666666654 2466666666666666666666655555555444444 6
Q ss_pred EeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCC
Q 036117 544 IDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIP 604 (641)
Q Consensus 544 L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip 604 (641)
|++++|++++..+..+. ..+|++|++++|.+++..+..++.+++|+.|++++|++.+..|
T Consensus 182 L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred eecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 66666666654444333 2356666666666664444445666666666666666665443
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=7e-24 Score=207.46 Aligned_cols=208 Identities=24% Similarity=0.222 Sum_probs=107.5
Q ss_pred CCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCC
Q 036117 387 LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGP 466 (641)
Q Consensus 387 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~ 466 (641)
.+++|+.|++++|.+... ..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~---------- 104 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGV---------- 104 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTT----------
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhH----------
Confidence 345566666666655422 234555666666666665553 2 24555555555555555555333333
Q ss_pred CCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeC
Q 036117 467 RFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDL 546 (641)
Q Consensus 467 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 546 (641)
+..+++|++|++++|++.+..+..+..+++|++|++++|++.+..+..++.+++|++|++
T Consensus 105 --------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 105 --------------------FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp --------------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred --------------------hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 344444444444444444444444455555555555555555444444455555555555
Q ss_pred CCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCccc
Q 036117 547 GDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDK 626 (641)
Q Consensus 547 s~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~ 626 (641)
++|++++..+..++.+++|++|++++|++++..|..++.+++|+.|++++|++.+.. +.++.++++.|+++|.
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGV 237 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGG
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCc
Confidence 555555544444555555555555555555544444555555555555555554332 2345555555555555
Q ss_pred CcccccCCC
Q 036117 627 IPAEIGKLS 635 (641)
Q Consensus 627 ~p~~~~~l~ 635 (641)
+|..++.++
T Consensus 238 ip~~~~~~~ 246 (272)
T 3rfs_A 238 VRNSAGSVA 246 (272)
T ss_dssp BBCTTSCBC
T ss_pred ccCcccccC
Confidence 555555443
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.3e-23 Score=204.58 Aligned_cols=208 Identities=15% Similarity=0.100 Sum_probs=113.6
Q ss_pred CCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCC
Q 036117 413 TNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGN 492 (641)
Q Consensus 413 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~ 492 (641)
+++++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+. +|++|++++|.+++..+..+..+++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS------HLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCT------TCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCc------CCCEEECCCCccCccChhhhcCCcc
Confidence 3455666666665544444555556666666666655544444444444 5666666666655555555555566
Q ss_pred CceEeccCCcccCCCccccccCCCCcEEECCCCcCccc-cCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCC----E
Q 036117 493 LIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGD-ITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLS----N 567 (641)
Q Consensus 493 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~----~ 567 (641)
|+.|++++|++.+..+..+.++++|++|++++|.+.+. +|..++.+++|++|++++|++++..+..+..+++|+ +
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence 66666666655554444555556666666666655542 355555556666666666665555555555555554 5
Q ss_pred EeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccC
Q 036117 568 FRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKI 627 (641)
Q Consensus 568 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~ 627 (641)
|++++|++.+..+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|++++..
T Consensus 182 L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp EECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred eecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 56666665543333332 235666666666655332333445556666666666655443
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=4.1e-22 Score=194.73 Aligned_cols=206 Identities=21% Similarity=0.183 Sum_probs=165.9
Q ss_pred CCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCC
Q 036117 389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRF 468 (641)
Q Consensus 389 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~ 468 (641)
...+.++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+. +
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~------~ 86 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK------N 86 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCT------T
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCC------C
Confidence 35788999999888 4555443 6799999999999866666888999999999999988744444445566 8
Q ss_pred ccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCC
Q 036117 469 LRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGD 548 (641)
Q Consensus 469 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 548 (641)
|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+.+..+..++.+++|+.|++++
T Consensus 87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence 99999999988865556677888888899988888877777788888888888888888876666778888888888888
Q ss_pred CcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccC
Q 036117 549 NQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKI 603 (641)
Q Consensus 549 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i 603 (641)
|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++....
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 8888777777888888888888888888666666888888888888888886543
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=9.7e-23 Score=199.36 Aligned_cols=226 Identities=21% Similarity=0.219 Sum_probs=156.1
Q ss_pred CCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhh
Q 036117 330 LTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI 409 (641)
Q Consensus 330 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~ 409 (641)
+..+++..+.+.+. .....+++|+.|++++|.++.+ +.+..+++|++|++++|.+++. ..+
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~---------------~~l~~l~~L~~L~l~~n~l~~~--~~l 81 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV---------------QGIQYLPNVRYLALGGNKLHDI--SAL 81 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC---------------TTGGGCTTCCEEECTTSCCCCC--GGG
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCcccc---------------cccccCCCCcEEECCCCCCCCc--hhh
Confidence 33444555555433 2355788899999888876654 3467789999999999999864 478
Q ss_pred hCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccC
Q 036117 410 GNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICR 489 (641)
Q Consensus 410 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 489 (641)
..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+. +|++|++++|.+++
T Consensus 82 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~-------- 147 (272)
T 3rfs_A 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT------NLTYLNLAHNQLQS-------- 147 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT------TCCEEECCSSCCCC--------
T ss_pred cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC------CCCEEECCCCccCc--------
Confidence 8999999999999999977777789999999999999988755544455444 56666666555543
Q ss_pred CCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEe
Q 036117 490 GGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFR 569 (641)
Q Consensus 490 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 569 (641)
..+..+..+++|+.|++++|++++..+..++.+++|++|++++|++++..+..+..+++|++|+
T Consensus 148 ----------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 148 ----------------LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp ----------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ----------------cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEE
Confidence 3333445556666666666666655555556666666666666666666666666666777777
Q ss_pred CcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCC
Q 036117 570 ISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSS 611 (641)
Q Consensus 570 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~ 611 (641)
+++|++.+. +++|+.+++..|.++|.+|.+++.+.
T Consensus 212 l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 212 LHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred ccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 777766533 34566677777777777776666553
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.1e-22 Score=197.26 Aligned_cols=204 Identities=19% Similarity=0.170 Sum_probs=156.4
Q ss_pred CCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCC
Q 036117 385 IGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDF 464 (641)
Q Consensus 385 l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 464 (641)
+..++++++++++++.++ .+|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.+++..+. ..+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~--- 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLP--- 77 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCT---
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCC---
Confidence 456788999999999887 4454443 6889999999999877778888899999999999988743221 3333
Q ss_pred CCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEE
Q 036117 465 GPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYI 544 (641)
Q Consensus 465 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 544 (641)
+|++|++++|+++ .+|..+..+++|+.|++++|++.+..+..|.++++|++|++++|++.+..+..|..+++|+.|
T Consensus 78 ---~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 78 ---VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp ---TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ---cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 7888888888887 677777777888888888888876666777778888888888888876666667777888888
Q ss_pred eCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcc
Q 036117 545 DLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG 601 (641)
Q Consensus 545 ~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 601 (641)
++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|+.++|++|++..
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 88888887666666677788888888888877 667777777778888888887753
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=2.2e-24 Score=220.46 Aligned_cols=263 Identities=16% Similarity=0.140 Sum_probs=164.9
Q ss_pred EEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCC-CCCEEEccCCcCcCCchhhhh
Q 036117 332 FLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLP-KLEYLYLFDNKFSGPIPQQIG 410 (641)
Q Consensus 332 ~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~-~L~~L~L~~n~l~~~~~~~~~ 410 (641)
.++++.|.+++.+|..+...++|++|++++|.++....- .+...+..++ +|++|++++|++++..+..+.
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~---------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 72 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTV---------ELIQAFANTPASVTSLNLSGNSLGFKNSDELV 72 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHH---------HHHHHHHTCCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHH---------HHHHHHHhCCCceeEEECcCCCCCHHHHHHHH
Confidence 457778888877777766666788888766665433100 0003445566 788888888888777666665
Q ss_pred CC-----CCCCeEecccCcCCccCccc----ccCC-CCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCccc
Q 036117 411 NL-----TNLFDLQLANNFFNGSIPST----IGNL-SSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFS 480 (641)
Q Consensus 411 ~l-----~~L~~L~l~~n~l~~~~~~~----l~~l-~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 480 (641)
.+ ++|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+...-. ..+.+|++|++++|.++
T Consensus 73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS-NLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHT-TSCTTCCEEECTTSCGG
T ss_pred HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHH-hCCCceeEEEccCCcCC
Confidence 53 78888888888877655443 3444 67888888888877655544432100 00116888888888777
Q ss_pred ccCC----ccccCCC-CCceEeccCCcccCCCcccc----ccC-CCCcEEECCCCcCccc----cCcccCC-CCCCcEEe
Q 036117 481 GKLP----PGICRGG-NLIYLTANVNKLVGPIPESL----WNC-TGLTRVRLEQNRLDGD----ITNALGI-YPDLQYID 545 (641)
Q Consensus 481 ~~~~----~~~~~~~-~L~~L~l~~n~~~~~~~~~l----~~~-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~ 545 (641)
+..+ ..+...+ .|+.|++++|++.+..+..+ ..+ ++|++|++++|.+.+. ++..+.. .++|++|+
T Consensus 152 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~ 231 (362)
T 3goz_A 152 IKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEE
T ss_pred HHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEE
Confidence 5333 3334444 77888888887776555433 334 4777788877777652 3333433 35777777
Q ss_pred CCCCcccccCCh----hhhcCCCCCEEeCcCCcCccc-------CCccccCCCCCCEEeCCCCcCcccCC
Q 036117 546 LGDNQLSGVLTS----NWGKCTNLSNFRISGNRIKGG-------IPAELGNLTYLQNLDIFDNQLTGKIP 604 (641)
Q Consensus 546 Ls~n~~~~~~~~----~~~~l~~L~~L~L~~n~l~~~-------~p~~l~~l~~L~~L~L~~n~l~~~ip 604 (641)
+++|++++..+. .+..+++|++|++++|.+.+. ++..+..+++|++||+++|++.+..|
T Consensus 232 Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 777777765442 234557777777777774332 22345667777777777777765533
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2.7e-24 Score=222.13 Aligned_cols=251 Identities=19% Similarity=0.229 Sum_probs=133.3
Q ss_pred cCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCC---cCcCCchhhh-------hCC
Q 036117 343 SLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDN---KFSGPIPQQI-------GNL 412 (641)
Q Consensus 343 ~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n---~l~~~~~~~~-------~~l 412 (641)
.++..+..+++|+.|++++|.+..... ..++..+..+++|++|++++| ++.+.+|..+ ..+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~---------~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~ 93 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAA---------RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHH---------HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHH---------HHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC
Confidence 345555666666666655554432100 012233455666666666664 3333334333 455
Q ss_pred CCCCeEecccCcCCc----cCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCcccc
Q 036117 413 TNLFDLQLANNFFNG----SIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGIC 488 (641)
Q Consensus 413 ~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 488 (641)
++|++|++++|.+.+ .++..+..+++|++|++++|.+++..+..+.. .+.
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------------~l~ 147 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------------ALQ 147 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------------HHH
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------------HHH
Confidence 666666666666654 24445555666666666666554332222221 111
Q ss_pred CC---------CCCceEeccCCccc-CCCc---cccccCCCCcEEECCCCcCcc-----ccCcccCCCCCCcEEeCCCCc
Q 036117 489 RG---------GNLIYLTANVNKLV-GPIP---ESLWNCTGLTRVRLEQNRLDG-----DITNALGIYPDLQYIDLGDNQ 550 (641)
Q Consensus 489 ~~---------~~L~~L~l~~n~~~-~~~~---~~l~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~ 550 (641)
.+ +.|+.|++++|++. +.++ ..+..+++|++|++++|++.. ..+..+..+++|+.|+|++|.
T Consensus 148 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp HHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred HHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC
Confidence 11 45555555555554 2222 234455666666666666552 222255556666666666666
Q ss_pred cc----ccCChhhhcCCCCCEEeCcCCcCccc----CCcccc--CCCCCCEEeCCCCcCcc----cCCccc-cCCCCCCE
Q 036117 551 LS----GVLTSNWGKCTNLSNFRISGNRIKGG----IPAELG--NLTYLQNLDIFDNQLTG----KIPAQL-FRSSFLIR 615 (641)
Q Consensus 551 ~~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~--~l~~L~~L~L~~n~l~~----~ip~~l-~~~~~L~~ 615 (641)
++ ..+|..+..+++|++|+|++|.+++. +|..+. .+++|++|+|++|.+++ .+|..+ ..+++|+.
T Consensus 228 l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 64 34555566666666666666666544 344442 26666666666666665 356555 34566666
Q ss_pred EeCcCCCCcccCc
Q 036117 616 LNLRRNQLSDKIP 628 (641)
Q Consensus 616 l~l~~n~l~~~~p 628 (641)
|++++|++++..|
T Consensus 308 L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 308 LELNGNRFSEEDD 320 (386)
T ss_dssp EECTTSBSCTTSH
T ss_pred EEccCCcCCcchh
Confidence 6666666665553
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.3e-21 Score=192.65 Aligned_cols=205 Identities=22% Similarity=0.178 Sum_probs=174.8
Q ss_pred hhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCC
Q 036117 347 SLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN 426 (641)
Q Consensus 347 ~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 426 (641)
.+..++++++++++++.++. +|..+ .++++.|++++|.+++..+..|..+++|+.|++++|.++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~--------------ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 68 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA--------------LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS--------------CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC
T ss_pred cccccCCccEEECCCCCCCc--------------CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC
Confidence 46677888888877776654 34433 268999999999999888889999999999999999998
Q ss_pred ccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCC
Q 036117 427 GSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGP 506 (641)
Q Consensus 427 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 506 (641)
+. +. ...+++|++|++++|.+. .+|..+..+. +|++|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus 69 ~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~------~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 69 KL-QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLP------ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139 (290)
T ss_dssp EE-EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCT------TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred cc-cC-CCCCCcCCEEECCCCcCC-cCchhhccCC------CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc
Confidence 54 33 278899999999999997 6777776666 899999999999976667899999999999999999977
Q ss_pred CccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcc
Q 036117 507 IPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKG 577 (641)
Q Consensus 507 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 577 (641)
.+..|..+++|+.|++++|++.+..+..+..+++|+.|++++|+++ .+|..+...++|+.+++++|++..
T Consensus 140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 7777889999999999999999777777888999999999999999 667778888899999999999864
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=4.5e-22 Score=198.71 Aligned_cols=226 Identities=15% Similarity=0.129 Sum_probs=177.1
Q ss_pred CCCCEEEccCCcCcCCchh---hhhCCCCCCeEecccCcCCccCcccc--cCCCCCCEEEccCCcCcccCC----cchhc
Q 036117 389 PKLEYLYLFDNKFSGPIPQ---QIGNLTNLFDLQLANNFFNGSIPSTI--GNLSSLVKLSLSSNQLTGTLP----PEIGN 459 (641)
Q Consensus 389 ~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~ls~n~l~~~~~----~~~~~ 459 (641)
..++.+.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4578888888877533111 12245679999999999988888777 889999999999999886555 22233
Q ss_pred CCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCC--C--ccccccCCCCcEEECCCCcCcccc--Cc
Q 036117 460 SKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGP--I--PESLWNCTGLTRVRLEQNRLDGDI--TN 533 (641)
Q Consensus 460 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~--~--~~~l~~~~~L~~L~l~~n~l~~~~--~~ 533 (641)
++ +|++|++++|.+++..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|+++... +.
T Consensus 144 ~~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 217 (310)
T 4glp_A 144 KP------GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA 217 (310)
T ss_dssp CS------CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH
T ss_pred cc------CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH
Confidence 44 899999999999877778888999999999999987642 2 233467899999999999996322 12
Q ss_pred -ccCCCCCCcEEeCCCCcccccCChhhhcC---CCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccC
Q 036117 534 -ALGIYPDLQYIDLGDNQLSGVLTSNWGKC---TNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFR 609 (641)
Q Consensus 534 -~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~ 609 (641)
.++.+++|++||+++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|+|++|++++ +|. +..
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~ 292 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDE 292 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTS
T ss_pred HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhh
Confidence 34678999999999999998878777776 69999999999998 6777764 799999999999985 454 567
Q ss_pred CCCCCEEeCcCCCCcc
Q 036117 610 SSFLIRLNLRRNQLSD 625 (641)
Q Consensus 610 ~~~L~~l~l~~n~l~~ 625 (641)
+++|+.|++++|+++.
T Consensus 293 l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 293 LPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCSCEECSSTTTSC
T ss_pred CCCccEEECcCCCCCC
Confidence 8999999999999874
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=9.2e-24 Score=213.96 Aligned_cols=198 Identities=17% Similarity=0.206 Sum_probs=118.1
Q ss_pred CCCEEEccCccccccCchhhhcC--CCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCC-c
Q 036117 329 NLTFLELSINNLTGSLPLSLASL--RQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGP-I 405 (641)
Q Consensus 329 ~L~~L~l~~n~l~~~~~~~l~~~--~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~-~ 405 (641)
.++.++++++.+. +..+..+ +.++.+++++|.+ .+..+. +..+++|++|++++|.+++. +
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l-------------~~~~~~-~~~~~~L~~L~L~~~~l~~~~~ 110 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFM-------------DQPLAE-HFSPFRVQHMDLSNSVIEVSTL 110 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEE-------------CSCCCS-CCCCBCCCEEECTTCEECHHHH
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccc-------------cccchh-hccCCCCCEEEccCCCcCHHHH
Confidence 4788888887776 4555555 6777777555543 333333 44678888888888887755 6
Q ss_pred hhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCC-cCccc-CCcchhcCCCCCCCCCccEEEccCC-ccccc
Q 036117 406 PQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSN-QLTGT-LPPEIGNSKSDFGPRFLRNVSFSYN-NFSGK 482 (641)
Q Consensus 406 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n-~l~~~-~~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~ 482 (641)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .+++.
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~------~L~~L~l~~~~~l~~~ 184 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS------RLDELNLSWCFDFTEK 184 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT------TCCEEECCCCTTCCHH
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC------CCCEEcCCCCCCcChH
Confidence 667777888888888888877667777777788888888877 45542 444444454 5666666666 55542
Q ss_pred -CCccccCCC-CCceEeccCCc--cc-CCCccccccCCCCcEEECCCCc-CccccCcccCCCCCCcEEeCCCC
Q 036117 483 -LPPGICRGG-NLIYLTANVNK--LV-GPIPESLWNCTGLTRVRLEQNR-LDGDITNALGIYPDLQYIDLGDN 549 (641)
Q Consensus 483 -~~~~~~~~~-~L~~L~l~~n~--~~-~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 549 (641)
++..+..++ +|+.|++++|. +. +.+|..+.++++|++|++++|. +++..+..++.+++|++|++++|
T Consensus 185 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 344444455 55555555552 22 2233334444444444444444 33333334444444444444444
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.5e-23 Score=214.22 Aligned_cols=260 Identities=18% Similarity=0.127 Sum_probs=174.3
Q ss_pred eeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCc----hhhhcCC-CCCeEeCCcccccccceeecccccccccCC
Q 036117 308 RLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLP----LSLASLR-QISELGISNNQLSEIISLQLQMNDLSGKLP 382 (641)
Q Consensus 308 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~----~~l~~~~-~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~ 382 (641)
.++++.+.+.+.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.++.. .+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-------------~~ 68 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-------------NS 68 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS-------------CH
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH-------------HH
Confidence 35677777877777766666678888888888887666 6667777 788888766665432 22
Q ss_pred cCCCC-----CCCCCEEEccCCcCcCCchhhh----hCC-CCCCeEecccCcCCccCccc----ccC-CCCCCEEEccCC
Q 036117 383 PEIGL-----LPKLEYLYLFDNKFSGPIPQQI----GNL-TNLFDLQLANNFFNGSIPST----IGN-LSSLVKLSLSSN 447 (641)
Q Consensus 383 ~~l~~-----~~~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~~~~----l~~-l~~L~~L~ls~n 447 (641)
..+.. +++|++|++++|++++..+..+ ..+ ++|++|++++|.+++..+.. +.. .++|++|++++|
T Consensus 69 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 69 DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred HHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 22332 2788888888888887666544 334 78888888888887654433 333 358888888888
Q ss_pred cCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCcccc----CC-CCCceEeccCCcccCC----Ccccccc-CCCC
Q 036117 448 QLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGIC----RG-GNLIYLTANVNKLVGP----IPESLWN-CTGL 517 (641)
Q Consensus 448 ~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~----~~-~~L~~L~l~~n~~~~~----~~~~l~~-~~~L 517 (641)
.+++..+..+...- ...+++|++|++++|++++..+..+. .+ ++|+.|++++|.+.+. ++..+.. .++|
T Consensus 149 ~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 149 DLGIKSSDELIQIL-AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp CGGGSCHHHHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred cCCHHHHHHHHHHH-hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence 88754443332110 00012688888888888766554333 34 5888888888888753 3444544 4588
Q ss_pred cEEECCCCcCccccC----cccCCCCCCcEEeCCCCcccccCC-------hhhhcCCCCCEEeCcCCcCcccCCc
Q 036117 518 TRVRLEQNRLDGDIT----NALGIYPDLQYIDLGDNQLSGVLT-------SNWGKCTNLSNFRISGNRIKGGIPA 581 (641)
Q Consensus 518 ~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~~~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~p~ 581 (641)
++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|++.+..+.
T Consensus 228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 888888888876433 345677888888888888543322 3456677888888888888765443
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=4.5e-23 Score=208.90 Aligned_cols=234 Identities=18% Similarity=0.204 Sum_probs=152.5
Q ss_pred CCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCcc-CcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCC
Q 036117 389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGS-IPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPR 467 (641)
Q Consensus 389 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~ 467 (641)
+.++.+++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~------ 142 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS------ 142 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT------
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC------
Confidence 5677777777777665554 44567777777777776654 566677777777777777777666666666655
Q ss_pred CccEEEccCC-ccccc-CCccccCCCCCceEeccCC-cccCC-CccccccCC-CCcEEECCCC--cCc-cccCcccCCCC
Q 036117 468 FLRNVSFSYN-NFSGK-LPPGICRGGNLIYLTANVN-KLVGP-IPESLWNCT-GLTRVRLEQN--RLD-GDITNALGIYP 539 (641)
Q Consensus 468 ~L~~L~ls~n-~l~~~-~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~l~~~~-~L~~L~l~~n--~l~-~~~~~~~~~l~ 539 (641)
+|++|++++| .+++. ++..+..+++|+.|++++| .+.+. ++..+..++ +|++|++++| .++ +.++..+..++
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 222 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC
Confidence 6777777777 46542 5555666777777777777 66543 455566677 7777777777 344 34455556677
Q ss_pred CCcEEeCCCCc-ccccCChhhhcCCCCCEEeCcCCc-CcccCCccccCCCCCCEEeCCCCcCcccCCccccCC-CCCCEE
Q 036117 540 DLQYIDLGDNQ-LSGVLTSNWGKCTNLSNFRISGNR-IKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRL 616 (641)
Q Consensus 540 ~L~~L~Ls~n~-~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~-~~L~~l 616 (641)
+|++|++++|. +++..+..+..+++|++|++++|. +.......++++++|++|++++| +.. ..+..+ ..++.|
T Consensus 223 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L 298 (336)
T 2ast_B 223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHL 298 (336)
T ss_dssp TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTS
T ss_pred CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcce
Confidence 77777777777 666666677777777777777774 22222224666777777777777 321 122333 336666
Q ss_pred eCcCCCCcccCcccccC
Q 036117 617 NLRRNQLSDKIPAEIGK 633 (641)
Q Consensus 617 ~l~~n~l~~~~p~~~~~ 633 (641)
++++|++++..|..++.
T Consensus 299 ~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 299 QINCSHFTTIARPTIGN 315 (336)
T ss_dssp EESCCCSCCTTCSSCSS
T ss_pred EEecccCccccCCcccc
Confidence 67777777777766554
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.5e-23 Score=216.53 Aligned_cols=242 Identities=21% Similarity=0.235 Sum_probs=145.7
Q ss_pred CCCcCCCCCCCCCEEEccCccccccCch----hhhcCCCCCeEeCCcccccccceeecccccccccCCcCC-------CC
Q 036117 319 SIPKELGFCANLTFLELSINNLTGSLPL----SLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI-------GL 387 (641)
Q Consensus 319 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~----~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l-------~~ 387 (641)
.++..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+..+ .+.+|..+ ..
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l----------~~~~~~~~~~l~~~l~~ 92 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRV----------KDEIPEALRLLLQALLK 92 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSC----------GGGSHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCcc----------ccchhHHHHHHHHHHhh
Confidence 3555677889999999999999876444 466899999999888765433 34444444 67
Q ss_pred CCCCCEEEccCCcCcC----CchhhhhCCCCCCeEecccCcCCccCccc----ccCC---------CCCCEEEccCCcCc
Q 036117 388 LPKLEYLYLFDNKFSG----PIPQQIGNLTNLFDLQLANNFFNGSIPST----IGNL---------SSLVKLSLSSNQLT 450 (641)
Q Consensus 388 ~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----l~~l---------~~L~~L~ls~n~l~ 450 (641)
+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+.. +..+ ++|++|++++|.++
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 8999999999999997 47778899999999999999997543333 3333 78888888888776
Q ss_pred -ccCC---cchhcCCCCCCCCCccEEEccCCccccc-----CCccccCCCCCceEeccCCccc----CCCccccccCCCC
Q 036117 451 -GTLP---PEIGNSKSDFGPRFLRNVSFSYNNFSGK-----LPPGICRGGNLIYLTANVNKLV----GPIPESLWNCTGL 517 (641)
Q Consensus 451 -~~~~---~~~~~~~~~~~~~~L~~L~ls~n~l~~~-----~~~~~~~~~~L~~L~l~~n~~~----~~~~~~l~~~~~L 517 (641)
+.++ ..+..++ +|++|++++|.++.. .+..+..+++|+.|++++|.+. +.+|..+..+++|
T Consensus 173 ~~~~~~l~~~l~~~~------~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHR------LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp GGGHHHHHHHHHHCT------TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred cHHHHHHHHHHHhCC------CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 2333 2333444 566666666665421 2223444444555555544443 2334444444444
Q ss_pred cEEECCCCcCccc----cCccc--CCCCCCcEEeCCCCcccc----cCChhh-hcCCCCCEEeCcCCcCc
Q 036117 518 TRVRLEQNRLDGD----ITNAL--GIYPDLQYIDLGDNQLSG----VLTSNW-GKCTNLSNFRISGNRIK 576 (641)
Q Consensus 518 ~~L~l~~n~l~~~----~~~~~--~~l~~L~~L~Ls~n~~~~----~~~~~~-~~l~~L~~L~L~~n~l~ 576 (641)
++|++++|.+.+. ++..+ +.+++|++|+|++|.+++ .+|..+ .++++|++|++++|+++
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 4444444444332 22222 124444444444444443 233333 23344444444444444
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.9e-21 Score=187.79 Aligned_cols=189 Identities=25% Similarity=0.319 Sum_probs=125.0
Q ss_pred CCccccceeeCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCc
Q 036117 50 GPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIP 129 (641)
Q Consensus 50 ~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 129 (641)
+||.|.|+.|.. ..++++++++.+. .+| ..+. +++++|++++|.+.+..+..+..+++|++|++++|.+++..|
T Consensus 3 ~Cp~~~gC~C~~--~~~~l~~~~~~l~-~~p-~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE--GKKEVDCQGKSLD-SVP-SGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG--GGTEEECTTCCCS-SCC-SCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC--CCeEEecCCCCcc-ccC-CCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 578999999952 3456788888776 344 2332 578888888888887777778888888888888888887777
Q ss_pred cccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCch-hhcCCCC
Q 036117 130 PEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS-FIAECSK 208 (641)
Q Consensus 130 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~l~~~~~ 208 (641)
..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+..++. .+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 677778888888888888776666667777777777777777776666666666666666666666655544 3445555
Q ss_pred CcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccc
Q 036117 209 LMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFE 245 (641)
Q Consensus 209 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 245 (641)
|++|++++|.+. .++...+..+++|++|++++|.+.
T Consensus 157 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 157 LQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCcee
Confidence 555555555544 223233344444444444444443
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=7e-21 Score=183.78 Aligned_cols=181 Identities=21% Similarity=0.214 Sum_probs=150.4
Q ss_pred CCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCC
Q 036117 413 TNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGN 492 (641)
Q Consensus 413 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~ 492 (641)
...+.++++++.+. .+|..+. +.+++|++++|.+.+..+..+..+. +|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~ 84 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLT------KLTWLNLDYNQLQTLSAGVFDDLTE 84 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCT------TCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcc------cCCEEECCCCcCCccCHhHhccCCc
Confidence 45678899988887 5665543 6889999999998877777777776 8999999999888777777888889
Q ss_pred CceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcC
Q 036117 493 LIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISG 572 (641)
Q Consensus 493 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~ 572 (641)
|+.|++++|++.+..+..+..+++|++|++++|++.+..+..++.+++|++|++++|++++..+..++.+++|++|++++
T Consensus 85 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC
Confidence 99999999988877777788888899999999988877777778888999999999988877777788888899999999
Q ss_pred CcCcccCCccccCCCCCCEEeCCCCcCccc
Q 036117 573 NRIKGGIPAELGNLTYLQNLDIFDNQLTGK 602 (641)
Q Consensus 573 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 602 (641)
|++++..+..+..+++|+.|++++|++.+.
T Consensus 165 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 165 NQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 988877777888888899999999988765
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.9e-21 Score=186.34 Aligned_cols=197 Identities=17% Similarity=0.167 Sum_probs=114.0
Q ss_pred CCCEEEccCCcCcCCchhhhhCCCCCCeEecccCc-CCccCcccccCCCCCCEEEccC-CcCcccCCcchhcCCCCCCCC
Q 036117 390 KLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNF-FNGSIPSTIGNLSSLVKLSLSS-NQLTGTLPPEIGNSKSDFGPR 467 (641)
Q Consensus 390 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~ls~-n~l~~~~~~~~~~~~~~~~~~ 467 (641)
++++|++++|++++..+..|..+++|++|++++|. +++..+..|..+++|++|++++ |.+++..+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~------------- 98 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP------------- 98 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT-------------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH-------------
Confidence 55666666666655444455555666666666654 5433334455555555555555 55543333
Q ss_pred CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCc---EEECCCC-cCccccCcccCCCCCCc-
Q 036117 468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLT---RVRLEQN-RLDGDITNALGIYPDLQ- 542 (641)
Q Consensus 468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~- 542 (641)
..+..+++|+.|++++|++.+ +|. +..+++|+ +|++++| .+.+..+..|..+++|+
T Consensus 99 -----------------~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~ 159 (239)
T 2xwt_C 99 -----------------DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159 (239)
T ss_dssp -----------------TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEE
T ss_pred -----------------HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhccee
Confidence 334444555555555555443 333 45555555 6666666 66655555566677777
Q ss_pred EEeCCCCcccccCChhhhcCCCCCEEeCcCCc-CcccCCccccCC-CCCCEEeCCCCcCcccCCccccCCCCCCEEeCcC
Q 036117 543 YIDLGDNQLSGVLTSNWGKCTNLSNFRISGNR-IKGGIPAELGNL-TYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRR 620 (641)
Q Consensus 543 ~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~ 620 (641)
.|++++|+++...+..+.. ++|++|++++|+ +++..+..|..+ ++|++|++++|+++ .+|.. .++.|+.|++++
T Consensus 160 ~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 160 TLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARN 235 (239)
T ss_dssp EEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTT
T ss_pred EEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccC
Confidence 7777777766333333333 667777777774 665555666777 77777777777776 45544 456677777766
Q ss_pred CC
Q 036117 621 NQ 622 (641)
Q Consensus 621 n~ 622 (641)
+.
T Consensus 236 ~~ 237 (239)
T 2xwt_C 236 TW 237 (239)
T ss_dssp C-
T ss_pred cc
Confidence 53
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=6.1e-21 Score=182.85 Aligned_cols=203 Identities=16% Similarity=0.189 Sum_probs=140.4
Q ss_pred cCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCc-CcCCchhhhhCCCCCCeEecc
Q 036117 343 SLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNK-FSGPIPQQIGNLTNLFDLQLA 421 (641)
Q Consensus 343 ~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~ 421 (641)
.+|. + .+++++|++++|+++ +..+..+..+++|++|++++|+ +++..+..|..+++|++|+++
T Consensus 25 ~ip~-~--~~~l~~L~l~~n~l~-------------~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~ 88 (239)
T 2xwt_C 25 RIPS-L--PPSTQTLKLIETHLR-------------TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88 (239)
T ss_dssp SCCC-C--CTTCCEEEEESCCCS-------------EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEE
T ss_pred ccCC-C--CCcccEEEEeCCcce-------------EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECC
Confidence 5665 3 237777776555544 4445578889999999999997 887777789999999999999
Q ss_pred c-CcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCcc---EEEccCC-cccccCCccccCCCCCceE
Q 036117 422 N-NFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR---NVSFSYN-NFSGKLPPGICRGGNLIYL 496 (641)
Q Consensus 422 ~-n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~---~L~ls~n-~l~~~~~~~~~~~~~L~~L 496 (641)
+ |.+++..+..|..+++|++|++++|.+++ +|. +..+. +|+ +|++++| .++
T Consensus 89 ~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~------~L~~L~~L~l~~N~~l~---------------- 144 (239)
T 2xwt_C 89 NTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY------STDIFFILEITDNPYMT---------------- 144 (239)
T ss_dssp EETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC------BCCSEEEEEEESCTTCC----------------
T ss_pred CCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc------ccccccEEECCCCcchh----------------
Confidence 9 99997666789999999999999999874 554 44433 444 5555555 444
Q ss_pred eccCCcccCCCccccccCCCCc-EEECCCCcCccccCcccCCCCCCcEEeCCCCc-ccccCChhhhcC-CCCCEEeCcCC
Q 036117 497 TANVNKLVGPIPESLWNCTGLT-RVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ-LSGVLTSNWGKC-TNLSNFRISGN 573 (641)
Q Consensus 497 ~l~~n~~~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~l-~~L~~L~L~~n 573 (641)
+..+..|.++++|+ +|++++|++....+..+.. ++|+.|++++|+ +++..+..+..+ ++|++|++++|
T Consensus 145 --------~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 145 --------SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp --------EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred --------hcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 33334455566666 6666666666333333333 677777777774 766666667777 77777777777
Q ss_pred cCcccCCccccCCCCCCEEeCCCC
Q 036117 574 RIKGGIPAELGNLTYLQNLDIFDN 597 (641)
Q Consensus 574 ~l~~~~p~~l~~l~~L~~L~L~~n 597 (641)
+++ .+|.. .+++|+.|+++++
T Consensus 216 ~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 216 SVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCC-CCCCT--TCTTCSEEECTTC
T ss_pred ccc-cCChh--HhccCceeeccCc
Confidence 776 34433 5667777777765
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.2e-21 Score=193.64 Aligned_cols=223 Identities=17% Similarity=0.136 Sum_probs=136.5
Q ss_pred CCCCEEECCCCCCCccCch---hccCCCCCCEEECCCCcCCCCCcccc--CCCCCCCEEEcccccCCCCCC----hhccC
Q 036117 88 PNLTALNLNMNNLVGSIPA---GIGNATKLILLDLSSNNLTNPIPPEI--GYLSDLRVLLLYNNSLTGQIP----HQLSN 158 (641)
Q Consensus 88 ~~L~~L~L~~n~~~~~~~~---~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~l~~n~~~~~~~----~~l~~ 158 (641)
..++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3567788887776532111 12234668888888888888888777 788888888888888886544 34457
Q ss_pred CCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCC---Cch--hhcCCCCCcEEEeeCCcCCCCCCh---hhhcC
Q 036117 159 LQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEK---FPS--FIAECSKLMFLDLSDNLIMGHIPI---EQLTH 230 (641)
Q Consensus 159 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~---l~~--~l~~~~~L~~L~l~~~~~~~~~~~---~~l~~ 230 (641)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.. ++. .+..+++|++|++++|.++ .++. ..+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 8888888888888887777777788888888888877532 221 2345666666666666664 2221 12345
Q ss_pred CCCCcEEeccCCcccccCCcccCCC---CCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCC
Q 036117 231 LENLEYLNLTKNSFEGEIPREIKTF---PKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQ 307 (641)
Q Consensus 231 l~~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 307 (641)
+++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++. | .+..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~-~~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P-QPDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C-CTTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c-hhhhCCCcc
Confidence 5666666666666665545554444 45666666666555 3444332 4555555555554432 1 123334444
Q ss_pred eeeccCccC
Q 036117 308 RLNLKSAGL 316 (641)
Q Consensus 308 ~L~l~~~~~ 316 (641)
.|++++|.+
T Consensus 298 ~L~L~~N~l 306 (310)
T 4glp_A 298 NLTLDGNPF 306 (310)
T ss_dssp CEECSSTTT
T ss_pred EEECcCCCC
Confidence 444444443
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.1e-20 Score=187.96 Aligned_cols=172 Identities=27% Similarity=0.398 Sum_probs=82.2
Q ss_pred CCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCC
Q 036117 385 IGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDF 464 (641)
Q Consensus 385 l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 464 (641)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+++ ++. +..++
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~--- 129 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLS--- 129 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCT---
T ss_pred hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCC---
Confidence 4445566666666666654333 5556666666666666553 22 35555566666666665543 221 33333
Q ss_pred CCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEE
Q 036117 465 GPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYI 544 (641)
Q Consensus 465 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 544 (641)
+|++|++++|.+++. +. +..+++|+.|++++|++.+..+ +..+++|+.|++++|++.+..+ +..+++|++|
T Consensus 130 ---~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L 200 (308)
T 1h6u_A 130 ---NLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEV 200 (308)
T ss_dssp ---TCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred ---CCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEE
Confidence 455555555555422 11 4444444445444444442211 4444444444444444443222 3444444444
Q ss_pred eCCCCcccccCChhhhcCCCCCEEeCcCCcCc
Q 036117 545 DLGDNQLSGVLTSNWGKCTNLSNFRISGNRIK 576 (641)
Q Consensus 545 ~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 576 (641)
++++|++++..+ +..+++|++|++++|+++
T Consensus 201 ~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 201 HLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp ECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred EccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 444444443321 344444444444444443
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=3.5e-20 Score=184.39 Aligned_cols=195 Identities=22% Similarity=0.365 Sum_probs=130.6
Q ss_pred CCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCc
Q 036117 84 FSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAW 163 (641)
Q Consensus 84 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 163 (641)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 3356677777777777663 33 466777777777777777743 33 77777777777777777643 3566777777
Q ss_pred EEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCc
Q 036117 164 LLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNS 243 (641)
Q Consensus 164 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 243 (641)
+|++++|.+.+.. .+..+++|++|++++|.+..++. +..+++|++|++++|.+.+ ++. +..+++|++|++++|.
T Consensus 111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh--hcCCCCCCEEECCCCc
Confidence 7777777776643 26677777777777777766655 6677777777777777663 332 4667777777777777
Q ss_pred ccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccc
Q 036117 244 FEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHG 294 (641)
Q Consensus 244 ~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~ 294 (641)
+++..+ +..+++|++|++++|.+.+.. .+..+++|++|++++|.+++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 764322 666777777777777776443 26667777777777777654
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=4.8e-20 Score=172.49 Aligned_cols=184 Identities=22% Similarity=0.222 Sum_probs=146.6
Q ss_pred CccccceeeCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCcc
Q 036117 51 PCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPP 130 (641)
Q Consensus 51 ~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 130 (641)
.|.|+++.|...+ +. .+| ..-.++|++|++++|.+.+..+..+..+++|++|++++|.+++..+.
T Consensus 6 ~C~~~~v~c~~~~-----------l~-~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (208)
T 2o6s_A 6 SCSGTTVECYSQG-----------RT-SVP---TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70 (208)
T ss_dssp EEETTEEECCSSC-----------CS-SCC---SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred EECCCEEEecCCC-----------cc-CCC---CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence 4789999997422 11 222 22246899999999999877777788999999999999999976666
Q ss_pred ccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchh-hcCCCCC
Q 036117 131 EIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSF-IAECSKL 209 (641)
Q Consensus 131 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-l~~~~~L 209 (641)
.|..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+..++.. +..+++|
T Consensus 71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 678999999999999999877777788999999999999999888888888888999999998888777654 6778888
Q ss_pred cEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCC
Q 036117 210 MFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPK 257 (641)
Q Consensus 210 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 257 (641)
++|++++|.+. ..++.|++|+++.|.++|.+|..++.++.
T Consensus 151 ~~L~l~~N~~~--------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 151 QYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CEEECCSCCBC--------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cEEEecCCCee--------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 88888888665 34567788888888888888877766544
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3.8e-20 Score=173.18 Aligned_cols=180 Identities=17% Similarity=0.137 Sum_probs=99.7
Q ss_pred CeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCce
Q 036117 416 FDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIY 495 (641)
Q Consensus 416 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 495 (641)
+.++++++.++ .+|..+ .+++++|++++|.+++..+..+..+. +|++|++++|++++..+..+..+++|++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELT------SLTQLYLGGNKLQSLPNGVFNKLTSLTY 80 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT------TCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccc------cCcEEECCCCccCccChhhcCCCCCcCE
Confidence 45566666655 334322 34666777777666644443444444 5666666666665433334455566666
Q ss_pred EeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcC
Q 036117 496 LTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRI 575 (641)
Q Consensus 496 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l 575 (641)
|++++|++.+..+..+..+++|++|++++|++.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 66666665544444455556666666666665554444455556666666666665555444455555666666666655
Q ss_pred cccCCccccCCCCCCEEeCCCCcCcccCCccccCCC
Q 036117 576 KGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSS 611 (641)
Q Consensus 576 ~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~ 611 (641)
.+ .+++|+.|+++.|+++|.+|.+++.++
T Consensus 161 ~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 161 DC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 42 233455555556666555555555443
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=6.7e-20 Score=195.57 Aligned_cols=187 Identities=26% Similarity=0.338 Sum_probs=104.2
Q ss_pred CCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCc
Q 036117 390 KLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFL 469 (641)
Q Consensus 390 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L 469 (641)
+++.|++++|.+++ +|..+ +++|+.|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--------~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--------SL 122 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--------TC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--------CC
Confidence 66667777666664 44433 256666666666666 444 335666666666666664 444 322 46
Q ss_pred cEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCC
Q 036117 470 RNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDN 549 (641)
Q Consensus 470 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 549 (641)
++|++++|++++ +|. .+++|+.|++++|++.+ +|. .+++|++|++++|++++ +|. +. ++|+.|++++|
T Consensus 123 ~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 123 KHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS
T ss_pred CEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC
Confidence 666666666654 444 45566666666666654 443 34556666666666654 333 33 56666666666
Q ss_pred cccccCChhhhcCCCC-------CEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCC
Q 036117 550 QLSGVLTSNWGKCTNL-------SNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS 610 (641)
Q Consensus 550 ~~~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~ 610 (641)
+++ .+|. +.. +| +.|++++|+++ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus 191 ~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 191 LLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 655 3333 332 44 55666666555 455555555666666666666655555554443
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.7e-19 Score=183.19 Aligned_cols=221 Identities=18% Similarity=0.120 Sum_probs=143.1
Q ss_pred CCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCcc-ccCCCCCCCE-EEcccccCCCCCChhccCCCCCcEE
Q 036117 88 PNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPP-EIGYLSDLRV-LLLYNNSLTGQIPHQLSNLQNAWLL 165 (641)
Q Consensus 88 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~-L~l~~n~~~~~~~~~l~~l~~L~~L 165 (641)
+++++|+|++|+++...+.+|.++++|++|+|++|.+.+.+|. +|.+++++++ +.+..|+++...|..|.++++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 5677788888877754445677778888888888777655543 5677777664 4555677776667777777888888
Q ss_pred EeccccCCCCCCcccCCCCCCCEEEcCC-CCCCCCch-hhcCC-CCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccC-
Q 036117 166 RIGANYLEDPDPVKFKGMASLTDLWLDY-NLLEKFPS-FIAEC-SKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTK- 241 (641)
Q Consensus 166 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~-~~~~~l~~-~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~- 241 (641)
++++|.+....+..+....++..+++.+ +.+..++. .+..+ ..++.|++++|.+. .++...+ ...+|+++++++
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f-~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAF-NGTQLDELNLSDN 187 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSS-TTEEEEEEECTTC
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhc-cccchhHHhhccC
Confidence 8888877777766666667777777754 45555554 23333 35777788887776 5555443 345677777765
Q ss_pred CcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCc
Q 036117 242 NSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSA 314 (641)
Q Consensus 242 n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~ 314 (641)
|.++...+..|..+++|++|++++|+++...+.. +.+|+.|.+.++.-...+| .+..+++|+.+++.++
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4455333345677778888888888777433322 3445555544444334444 4667777888777654
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=8.2e-20 Score=194.91 Aligned_cols=196 Identities=25% Similarity=0.328 Sum_probs=145.7
Q ss_pred cccce-eeCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccc
Q 036117 53 NWNGI-QCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPE 131 (641)
Q Consensus 53 ~~~gv-~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 131 (641)
.|.|+ .|. .++++.|+++++.+.+ +| ..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|.
T Consensus 49 ~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp-~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~- 117 (571)
T 3cvr_A 49 AVSLLKECL-INQFSELQLNRLNLSS-LP-DNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE- 117 (571)
T ss_dssp HHHHHHHHH-HTTCSEEECCSSCCSC-CC-SCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred hhhhccccc-cCCccEEEeCCCCCCc-cC-HhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-
Confidence 68888 675 4689999999999886 66 334 478999999999998 566 457899999999999986 676
Q ss_pred cCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcE
Q 036117 132 IGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMF 211 (641)
Q Consensus 132 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~ 211 (641)
+.. +|++|++++|.+++ +|. .+++|++|++++|.+++++. .+++|++|++++|.+..+|. +. ++|++
T Consensus 118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~ 184 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEA 184 (571)
T ss_dssp CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCE
T ss_pred hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCE
Confidence 655 89999999999886 555 67888999999888887544 56788888888888877777 54 78888
Q ss_pred EEeeCCcCCCCCChhhhcCCCCC-------cEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCC
Q 036117 212 LDLSDNLIMGHIPIEQLTHLENL-------EYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGL 278 (641)
Q Consensus 212 L~l~~~~~~~~~~~~~l~~l~~L-------~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~ 278 (641)
|++++|.++ .+|. + .. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..
T Consensus 185 L~Ls~N~L~-~lp~-~-~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 185 LDVSTNLLE-SLPA-V-PV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp EECCSSCCS-SCCC-C-C----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred EECcCCCCC-chhh-H-HH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 888888777 5554 2 22 45 67777777766 45666666666777777777666655554443
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=1.2e-18 Score=176.89 Aligned_cols=241 Identities=18% Similarity=0.126 Sum_probs=146.5
Q ss_pred CEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCch-hhh
Q 036117 331 TFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIP-QQI 409 (641)
Q Consensus 331 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~ 409 (641)
++++.++++++ .+|..+ .+++++|++++|+++.+ -+..|..+++|++|+|++|++.+.++ .+|
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i-------------~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f 75 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVI-------------QKGAFSGFGDLEKIEISQNDVLEVIEADVF 75 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEE-------------CTTSSTTCTTCCEEEEECCTTCCEECTTSB
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCc-------------CHHHHcCCCCCCEEECcCCCCCCccChhHh
Confidence 67777777777 566655 35677777666655433 23457778888888888888765554 456
Q ss_pred hCCCCCCe-EecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCC-cccccCCccc
Q 036117 410 GNLTNLFD-LQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYN-NFSGKLPPGI 487 (641)
Q Consensus 410 ~~l~~L~~-L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~~~~~~ 487 (641)
.+++++++ +.+.+|++....+..|..+++|++|++++|.+....+..+.... ++..+++.++ .+....+..+
T Consensus 76 ~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~------~l~~l~l~~~~~i~~l~~~~f 149 (350)
T 4ay9_X 76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL------QKVLLDIQDNINIHTIERNSF 149 (350)
T ss_dssp CSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBS------SCEEEEEESCTTCCEECTTSS
T ss_pred hcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccc------hhhhhhhccccccccccccch
Confidence 77777665 45566777766677778888888888888887644333333333 5667777553 4442222334
Q ss_pred cCC-CCCceEeccCCcccCCCccccccCCCCcEEECCC-CcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCC
Q 036117 488 CRG-GNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQ-NRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNL 565 (641)
Q Consensus 488 ~~~-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L 565 (641)
..+ ..++.|++++|++.. +|.......+|+++++++ |.+....+..|+.+++|++||+++|+++...+.. +.+|
T Consensus 150 ~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L 225 (350)
T 4ay9_X 150 VGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENL 225 (350)
T ss_dssp TTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTC
T ss_pred hhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccc
Confidence 443 346667777777763 333333445677777764 4444333345667777777777777776443333 3445
Q ss_pred CEEeCcCCcCcccCCccccCCCCCCEEeCCCCc
Q 036117 566 SNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQ 598 (641)
Q Consensus 566 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 598 (641)
+.|.+.++.-.+.+|. +.++++|+.++++++.
T Consensus 226 ~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 226 KKLRARSTYNLKKLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp CEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred hHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence 5555555544445553 5667777777776543
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2.5e-18 Score=161.95 Aligned_cols=156 Identities=16% Similarity=0.215 Sum_probs=102.9
Q ss_pred CEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCC-ccccCCCCCceEeccCCcccCCCccccccCCCCc
Q 036117 440 VKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLP-PGICRGGNLIYLTANVNKLVGPIPESLWNCTGLT 518 (641)
Q Consensus 440 ~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 518 (641)
+.+++++|.++ .+|..+.. .+++|++++|.+++..+ ..+..++.|+.|++++|++.+..+..|.++++|+
T Consensus 14 ~~l~~s~n~l~-~iP~~~~~--------~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 84 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIPQ--------YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN 84 (220)
T ss_dssp TEEECCSSCCS-SCCSCCCT--------TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEeEeCCCCcc-cCccCCCC--------CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCC
Confidence 46777777765 45544322 46677777777765543 3356667777777777776665555666677777
Q ss_pred EEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCc
Q 036117 519 RVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQ 598 (641)
Q Consensus 519 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 598 (641)
+|++++|++.+..+..|+.+++|++|++++|++++..|..+..+++|++|+|++|++++..|..|..+++|++|++++|+
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 77777777766666666667777777777777776666666667777777777777766666666677777777777776
Q ss_pred CcccCC
Q 036117 599 LTGKIP 604 (641)
Q Consensus 599 l~~~ip 604 (641)
+.+..+
T Consensus 165 l~c~c~ 170 (220)
T 2v70_A 165 FNCNCY 170 (220)
T ss_dssp EECSGG
T ss_pred CcCCCc
Confidence 665433
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=3.8e-18 Score=160.64 Aligned_cols=153 Identities=14% Similarity=0.177 Sum_probs=106.4
Q ss_pred CEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcE
Q 036117 440 VKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTR 519 (641)
Q Consensus 440 ~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 519 (641)
+.++.+++.++ .+|..+. +.+++|++++|.+++..+..+..+++|+.|++++|++.+..|..|.++++|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--------~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--------ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--------TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred CEEEcCCCCcC-cCCCccC--------cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence 46777777665 4554432 16777777777777555556667777777777777777666677777777777
Q ss_pred EECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcC
Q 036117 520 VRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQL 599 (641)
Q Consensus 520 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 599 (641)
|++++|++.+..+..|..+++|++|++++|++++..|..+..+++|++|+|++|++++..+..+..+++|+.|+|++|++
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 77777777755555566777777777777777776677777777777777777777766666677777777777777776
Q ss_pred cc
Q 036117 600 TG 601 (641)
Q Consensus 600 ~~ 601 (641)
..
T Consensus 165 ~c 166 (220)
T 2v9t_B 165 IC 166 (220)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=3.5e-18 Score=184.53 Aligned_cols=171 Identities=23% Similarity=0.263 Sum_probs=97.6
Q ss_pred CCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCC
Q 036117 387 LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGP 466 (641)
Q Consensus 387 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~ 466 (641)
.++.|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++|.+.+ +| .+..+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~----- 109 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLK----- 109 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCT-----
T ss_pred cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCC-----
Confidence 456667777777766533 2 36666777777777776664333 6666677777777766653 22 344444
Q ss_pred CCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeC
Q 036117 467 RFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDL 546 (641)
Q Consensus 467 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 546 (641)
+|++|++++|.+.+ + ..+..+++|+.|++++|++.+. ..+..+++|+.|+|++|.+.+..+ +..+++|+.|+|
T Consensus 110 -~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 110 -KLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp -TCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred -CCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence 56666666666653 2 3355556666666666655543 345555556666666655554443 555555566666
Q ss_pred CCCcccccCChhhhcCCCCCEEeCcCCcCcc
Q 036117 547 GDNQLSGVLTSNWGKCTNLSNFRISGNRIKG 577 (641)
Q Consensus 547 s~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 577 (641)
++|++++. ..+..+++|+.|+|++|++.+
T Consensus 183 s~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 183 SKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred cCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 65555543 235555555555555555543
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=2.2e-18 Score=169.86 Aligned_cols=189 Identities=22% Similarity=0.257 Sum_probs=139.2
Q ss_pred CCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCcc
Q 036117 391 LEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR 470 (641)
Q Consensus 391 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~ 470 (641)
+..+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+++.. . +..+. +|+
T Consensus 26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~------~L~ 93 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK-P-LANLK------NLG 93 (291)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCT------TCC
T ss_pred HHHHHhcCCCcccccc--hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCc-c-cccCC------CCC
Confidence 3444566666654432 3467788899999888874 33 3777888999999988887533 3 66666 788
Q ss_pred EEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCc
Q 036117 471 NVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ 550 (641)
Q Consensus 471 ~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 550 (641)
+|++++|.+++ ++.+..+++|+.|++++|++.+. ..+..+++|+.|++++|++.+. ..++.+++|+.|++++|+
T Consensus 94 ~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 94 WLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp EEECCSSCCCC--GGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred EEECCCCcCCC--ChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCc
Confidence 88888888864 23477788888888888887753 3577788888888888888754 467778888888888888
Q ss_pred ccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcc
Q 036117 551 LSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG 601 (641)
Q Consensus 551 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 601 (641)
+++..+ +..+++|++|++++|.+++ +| .+..+++|+.|++++|++..
T Consensus 168 l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 168 ISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred cccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 876654 7778888888888888874 33 37788888888888888764
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1e-17 Score=158.77 Aligned_cols=155 Identities=18% Similarity=0.113 Sum_probs=95.3
Q ss_pred CCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCc
Q 036117 439 LVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLT 518 (641)
Q Consensus 439 L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 518 (641)
-+.++.+++.+. .+|..+. ++|++|++++|.+++..|..+..+++|+.|++++|++....+..|..+++|+
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 91 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCEeEccCCCcC-ccCCCCC--------CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence 445666666654 4454332 1566666666666665566666666666666666666544444556666666
Q ss_pred EEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCc
Q 036117 519 RVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQ 598 (641)
Q Consensus 519 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 598 (641)
.|++++|++.+..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus 92 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 6666666666555555666666666666666666 455566666666666666666665544556666666666666666
Q ss_pred CcccC
Q 036117 599 LTGKI 603 (641)
Q Consensus 599 l~~~i 603 (641)
+.+..
T Consensus 171 ~~c~c 175 (229)
T 3e6j_A 171 WDCEC 175 (229)
T ss_dssp BCTTB
T ss_pred ccCCc
Confidence 65443
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=7.5e-18 Score=158.60 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=80.9
Q ss_pred eEecccCcCCccCcccccCCCCCCEEEccCCcCcccCC-cchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCce
Q 036117 417 DLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLP-PEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIY 495 (641)
Q Consensus 417 ~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 495 (641)
.+++++|.++ .+|..+ .+.+++|++++|.+++..+ ..+..+. +|++|++++|++++..+..+..+++|+.
T Consensus 15 ~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~------~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLP------QLRKINFSNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCT------TCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred EeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCC------CCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence 5555555554 234332 1234555555555554433 2234444 5555555555555444445555555555
Q ss_pred EeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcC
Q 036117 496 LTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRI 575 (641)
Q Consensus 496 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l 575 (641)
|++++|++.+..+..|..+++|++|++++|++.+..+..+..+++|+.|++++|++++..|..+..+++|++|++++|++
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 55555555555445555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cc
Q 036117 576 KG 577 (641)
Q Consensus 576 ~~ 577 (641)
.+
T Consensus 166 ~c 167 (220)
T 2v70_A 166 NC 167 (220)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=7.5e-18 Score=165.98 Aligned_cols=172 Identities=23% Similarity=0.362 Sum_probs=83.7
Q ss_pred CCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcE
Q 036117 85 SAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWL 164 (641)
Q Consensus 85 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 164 (641)
+.+++|++|++++|.+.+. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 3455566666666655532 2 25556666666666666654322 55556666666666655431 22444555555
Q ss_pred EEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcc
Q 036117 165 LRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF 244 (641)
Q Consensus 165 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 244 (641)
|++++|.+.+. ..+..+++|++|++++|.+..+ ..+ ..+++|++|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l-------------------------~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVL-------------------------SRLTKLDTLSLEDNQI 168 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGG-------------------------GGCTTCSEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhh-------------------------ccCCCCCEEEccCCcc
Confidence 55555544432 2233344444444444444333 223 4444455555555444
Q ss_pred cccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccc
Q 036117 245 EGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHG 294 (641)
Q Consensus 245 ~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~ 294 (641)
++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+..
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 43222 4445555555555555542 22 24555555555555555543
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=6.6e-18 Score=172.12 Aligned_cols=176 Identities=22% Similarity=0.138 Sum_probs=97.5
Q ss_pred CeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchh-cCCCCCCCCCccEEEccCCcccccCCccccCCCCCc
Q 036117 416 FDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIG-NSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLI 494 (641)
Q Consensus 416 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~ 494 (641)
+.++++++.+. .+|..+. +.++.|++++|.+++..+..+. .+. +|++|++++|++++..+..+..++.|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~------~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLT------NLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCT------TCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhccc------ccCEEECCCCcCCccChhhccCCCCCC
Confidence 45666666666 3454332 3466667776666654444443 444 566666666666554445555566666
Q ss_pred eEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhh---hcCCCCCEEeCc
Q 036117 495 YLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNW---GKCTNLSNFRIS 571 (641)
Q Consensus 495 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~---~~l~~L~~L~L~ 571 (641)
.|++++|++.+..+..|..+++|+.|++++|++.+..+..|..+++|+.|+|++|++++..+..+ ..+++|+.|+|+
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 66666666554444455556666666666666655555555556666666666666554333333 345555666666
Q ss_pred CCcCcccCCccccCCCC--CCEEeCCCCcCc
Q 036117 572 GNRIKGGIPAELGNLTY--LQNLDIFDNQLT 600 (641)
Q Consensus 572 ~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~ 600 (641)
+|++++..+..+..++. ++.|+|++|++.
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 66555433344555544 255555555554
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=2.3e-17 Score=155.24 Aligned_cols=152 Identities=17% Similarity=0.191 Sum_probs=101.2
Q ss_pred CeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCce
Q 036117 416 FDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIY 495 (641)
Q Consensus 416 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 495 (641)
+.++++++.++ .+|..+. +++++|++++|.+++..+..+..+. +|++|++++|++++..|..+..+++|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~------~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK------KLRRIDLSNNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT------TCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC------CCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence 45666666666 4454332 5677777777777655555555555 6777777777776666666777777777
Q ss_pred EeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcC
Q 036117 496 LTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRI 575 (641)
Q Consensus 496 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l 575 (641)
|++++|++....+..|..+++|++|++++|++.+..+..|..+++|+.|+|++|++++..+..+..+++|++|++++|++
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 77777777654445566677777777777777766666677777777777777777766666666677777777777766
Q ss_pred c
Q 036117 576 K 576 (641)
Q Consensus 576 ~ 576 (641)
.
T Consensus 165 ~ 165 (220)
T 2v9t_B 165 I 165 (220)
T ss_dssp E
T ss_pred C
Confidence 5
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.5e-17 Score=153.81 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=102.8
Q ss_pred CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCC
Q 036117 468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLG 547 (641)
Q Consensus 468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 547 (641)
+|++|++++|.++ .+| .+..+++|+.|++++|.+. .+..+..+++|++|++++|++.+..+..++.+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 4555555555544 333 4555566666666666443 22356677778888888887777677777778888888888
Q ss_pred CCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcc
Q 036117 548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSD 625 (641)
Q Consensus 548 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~ 625 (641)
+|++++..+..+..+++|++|++++|+..+.+| .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 888877777777888888888888887333455 57788888888888888874 54 66777888888888888753
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.2e-17 Score=180.42 Aligned_cols=224 Identities=19% Similarity=0.193 Sum_probs=176.9
Q ss_pred CCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCc
Q 036117 390 KLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFL 469 (641)
Q Consensus 390 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L 469 (641)
.+..+.+..+.+.+..+ +..++.|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+ +..+. +|
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~------~L 89 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLK------NL 89 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCT------TC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCC------CC
Confidence 45566677777775543 4678899999999999874 44 58889999999999999985443 66776 89
Q ss_pred cEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCC
Q 036117 470 RNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDN 549 (641)
Q Consensus 470 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 549 (641)
+.|++++|.+.+ + +.+..+++|+.|++++|++.+. ..+..+++|+.|+|++|.+.+. ..++.+++|+.|+|++|
T Consensus 90 ~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 90 GWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp CEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred CEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC
Confidence 999999999974 3 3788899999999999999853 4588999999999999999865 67889999999999999
Q ss_pred cccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccC-------------CCCCCEE
Q 036117 550 QLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFR-------------SSFLIRL 616 (641)
Q Consensus 550 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~-------------~~~L~~l 616 (641)
.+++..| +..+++|+.|+|++|++.+. ..+..+++|+.|+|++|++.+.....+.. ....+.+
T Consensus 164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l~~l~g~~~~~~~i 239 (605)
T 1m9s_A 164 QISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 239 (605)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCCBCSSSCBCCCSEE
T ss_pred cCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccEEecccccccCCCCcCchhc
Confidence 9998766 88999999999999999864 46899999999999999998642222111 2233444
Q ss_pred eCcCCCCcccCcccccCCC
Q 036117 617 NLRRNQLSDKIPAEIGKLS 635 (641)
Q Consensus 617 ~l~~n~l~~~~p~~~~~l~ 635 (641)
...++...|.+|+.+..++
T Consensus 240 ~~~g~~~~~~i~~~l~~~~ 258 (605)
T 1m9s_A 240 SDDGDYEKPNVKWHLPEFT 258 (605)
T ss_dssp STTCEEETTEEECCCSSCC
T ss_pred ccCCcccCCcceecccccc
Confidence 4555556667777666554
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=6.8e-17 Score=153.15 Aligned_cols=157 Identities=24% Similarity=0.277 Sum_probs=87.0
Q ss_pred CCCccccceeeCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCC
Q 036117 49 SGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPI 128 (641)
Q Consensus 49 ~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 128 (641)
...|.|+++.|+.. + +. .+| ..+ .++|++|+|++|.+.+..|..+..+++|++|++++|.+....
T Consensus 16 ~~~Cs~~~v~c~~~-~----------l~-~ip-~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~ 80 (229)
T 3e6j_A 16 QCSCSGTTVDCRSK-R----------HA-SVP-AGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP 80 (229)
T ss_dssp TCEEETTEEECTTS-C----------CS-SCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCEEeCCEeEccCC-C----------cC-ccC-CCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC
Confidence 46899999999742 1 11 223 111 256666666666666655666666666666666666665443
Q ss_pred ccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCC
Q 036117 129 PPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSK 208 (641)
Q Consensus 129 p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~ 208 (641)
+..|..+++|++|++++|.+++.. +..|..+++|++|++++|.+..+|..+..+++
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~~l~------------------------~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 136 (229)
T 3e6j_A 81 VGVFDSLTQLTVLDLGTNQLTVLP------------------------SAVFDRLVHLKELFMCCNKLTELPRGIERLTH 136 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCC------------------------TTTTTTCTTCCEEECCSSCCCSCCTTGGGCTT
T ss_pred hhhcccCCCcCEEECCCCcCCccC------------------------hhHhCcchhhCeEeccCCcccccCcccccCCC
Confidence 344555555666665555555443 34444445555555555555555555555555
Q ss_pred CcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccc
Q 036117 209 LMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFE 245 (641)
Q Consensus 209 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 245 (641)
|++|++++|.+. .++...+..+++|+.|++++|.+.
T Consensus 137 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 137 LTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555555555554 333333455555555555555544
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=5.4e-20 Score=197.49 Aligned_cols=216 Identities=17% Similarity=0.128 Sum_probs=121.9
Q ss_pred CCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCC
Q 036117 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFG 465 (641)
Q Consensus 386 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~ 465 (641)
..++.|+.|++++|+++ .+|..++.+++|+.|++++|......+..+ ..+...+..|..+..+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~---- 409 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFS---- 409 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHH----
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHH----
Confidence 34567777777777775 567777777777777775543111111100 01112233344444444
Q ss_pred CCCccEEE-ccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEE
Q 036117 466 PRFLRNVS-FSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYI 544 (641)
Q Consensus 466 ~~~L~~L~-ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 544 (641)
+|+.|+ ++.|.+. .|..+.+++|.+....+ ..|+.|++++|.+++ +|. ++.+++|+.|
T Consensus 410 --~L~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L 468 (567)
T 1dce_A 410 --TLKAVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHL 468 (567)
T ss_dssp --HHHHHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEE
T ss_pred --hcccCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEe
Confidence 455554 3333221 23333344444432111 236666666666664 344 6666777777
Q ss_pred eCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccC-CccccCCCCCCEEeCcCCCC
Q 036117 545 DLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKI-PAQLFRSSFLIRLNLRRNQL 623 (641)
Q Consensus 545 ~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i-p~~l~~~~~L~~l~l~~n~l 623 (641)
++++|.++ .+|..++.+++|+.|+|++|++++ +| .++++++|++|+|++|.+++.+ |..+..+++|+.|++++|++
T Consensus 469 ~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 469 DLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp ECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred ecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 77777766 556667777777777777777764 45 6667777777777777776554 66677777777777777777
Q ss_pred cccCccc---ccCCCCCcCCC
Q 036117 624 SDKIPAE---IGKLSRLQYLD 641 (641)
Q Consensus 624 ~~~~p~~---~~~l~~L~~l~ 641 (641)
++..|.. +..+++|+.||
T Consensus 546 ~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 546 CQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCccHHHHHHHHCcccCccC
Confidence 6654422 23356665543
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=3.7e-20 Score=198.82 Aligned_cols=191 Identities=18% Similarity=0.132 Sum_probs=129.5
Q ss_pred CCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCC
Q 036117 411 NLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG 490 (641)
Q Consensus 411 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~ 490 (641)
.++.|+.|++++|.+. .+|..++.+++|+.|++++|......|.. + ..+...+..|..+..+
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l------------l-----~~~~~~~~~~~~l~~l 408 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL------------M-----RALDPLLYEKETLQYF 408 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------H-----HHHCTGGGHHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH------------H-----HhcccccCCHHHHHHH
Confidence 4556666666666655 45655666666666665443211111100 0 0112334455566666
Q ss_pred CCCceEe-ccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEe
Q 036117 491 GNLIYLT-ANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFR 569 (641)
Q Consensus 491 ~~L~~L~-l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 569 (641)
++|+.|+ ++.|.+. .|..+.+++|.+.+..+ ..|+.|++++|.+++ +|. ++.+++|+.|+
T Consensus 409 ~~L~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~ 469 (567)
T 1dce_A 409 STLKAVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLD 469 (567)
T ss_dssp HHHHHHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEE
T ss_pred HhcccCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEee
Confidence 6666666 4444332 23344455555553222 248899999999886 565 88899999999
Q ss_pred CcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccC-cccccCCCCCcCCC
Q 036117 570 ISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKI-PAEIGKLSRLQYLD 641 (641)
Q Consensus 570 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~-p~~~~~l~~L~~l~ 641 (641)
+++|.++ .+|..++++++|+.|+|++|.+++ +| .+..+++|+.|++++|++++.. |..++.+++|+.||
T Consensus 470 Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 470 LSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp CCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred cCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 9999998 788899999999999999999985 77 7888999999999999998887 89999999888764
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=4.6e-17 Score=165.83 Aligned_cols=177 Identities=19% Similarity=0.147 Sum_probs=149.3
Q ss_pred CEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCccccc-CCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCcc
Q 036117 392 EYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIG-NLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR 470 (641)
Q Consensus 392 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~ 470 (641)
+.++++++.++ .+|..+. +.++.|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+. +|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~------~L~ 91 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP------NLR 91 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT------TCC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC------CCC
Confidence 68999999888 4565443 4689999999999977777777 899999999999999877777777777 899
Q ss_pred EEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCccc---CCCCCCcEEeCC
Q 036117 471 NVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNAL---GIYPDLQYIDLG 547 (641)
Q Consensus 471 ~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls 547 (641)
+|++++|++++..+..+..+++|+.|++++|++.+..|..|..+++|+.|++++|++.+..+..+ ..+++|+.|+|+
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 99999999987777778899999999999999998888889999999999999999987555555 578999999999
Q ss_pred CCcccccCChhhhcCCC--CCEEeCcCCcCcc
Q 036117 548 DNQLSGVLTSNWGKCTN--LSNFRISGNRIKG 577 (641)
Q Consensus 548 ~n~~~~~~~~~~~~l~~--L~~L~L~~n~l~~ 577 (641)
+|++++..+..+..++. ++.|++++|++..
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 99999777778888877 4889999999864
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=6.7e-17 Score=149.46 Aligned_cols=152 Identities=18% Similarity=0.226 Sum_probs=101.7
Q ss_pred CCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCC
Q 036117 436 LSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCT 515 (641)
Q Consensus 436 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~ 515 (641)
+++|++|++++|.+. .+| .+..++ +|++|++++|.++ .+..+..+++|+.|++++|++.+..+..+..++
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~------~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAH------NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCT------TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCC------CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 344445555554444 333 233333 4555555555332 233556667777777777777766667777888
Q ss_pred CCcEEECCCCcCccccCcccCCCCCCcEEeCCCCc-ccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeC
Q 036117 516 GLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ-LSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDI 594 (641)
Q Consensus 516 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 594 (641)
+|++|++++|++.+..+..++.+++|++|++++|+ ++ .++ .+..+++|++|++++|++++ ++ .+..+++|+.|++
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYA 188 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEe
Confidence 88888888888887777778888888888888887 55 444 57888888888888888875 33 6788888888888
Q ss_pred CCCcCcc
Q 036117 595 FDNQLTG 601 (641)
Q Consensus 595 ~~n~l~~ 601 (641)
++|++.+
T Consensus 189 ~~N~i~~ 195 (197)
T 4ezg_A 189 FSQTIGG 195 (197)
T ss_dssp CBC----
T ss_pred eCcccCC
Confidence 8888753
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=2.6e-18 Score=190.35 Aligned_cols=231 Identities=20% Similarity=0.194 Sum_probs=126.1
Q ss_pred cHHHHHHHHHHHhcCCCC---CCCCCCCCCCCCCCccccceeeCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEE---
Q 036117 20 AQKEAKALLNWKSSLVSS---SLPSWTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTAL--- 93 (641)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~---~~~~W~~~~~~~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L--- 93 (641)
.+.++.++.++..++..+ .-..|.... ...+.|.++.+. .++++.+++..+.+... + ..+.....|+.+
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s-~~~~~~l~L~~n~~~~~-~-~~~l~~l~Ls~~~i~ 204 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGDS--TPSGTATNSAVS-TPLTPKIELFANGKDEA-N-QALLQHKKLSQYSID 204 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCCC--CccccCCCceec-CCccceEEeeCCCCCcc-h-hhHhhcCccCccccc
Confidence 345667788877655221 133554432 345678888776 47899999988887642 2 222222222222
Q ss_pred --ECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEecccc
Q 036117 94 --NLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANY 171 (641)
Q Consensus 94 --~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 171 (641)
+++.|.+. ..+..+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|.
T Consensus 205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 23333333 45777889999999999999998 67877889999999999999998 788899999999999999999
Q ss_pred CCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCC-CCCcEEeccCCcccccCCc
Q 036117 172 LEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHL-ENLEYLNLTKNSFEGEIPR 250 (641)
Q Consensus 172 ~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~ 250 (641)
++. .+..|..+++|++|+|++|.++.+|..+..+++|++|++++|.+.+.++..+ ... .....+++++|.+++.+|.
T Consensus 282 l~~-lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 282 LTS-LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL-TEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CSS-CCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH-HHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCc-cChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH-hhcchhhhHHhhccCcccCcCcc
Confidence 984 4777899999999999999999999889999999999999999986665443 222 2223477888888877665
Q ss_pred ccCCCCCCCEEEcCCC
Q 036117 251 EIKTFPKLRHLKLGQN 266 (641)
Q Consensus 251 ~l~~l~~L~~L~L~~~ 266 (641)
. |+.|+++.|
T Consensus 360 ~------l~~l~l~~n 369 (727)
T 4b8c_D 360 E------RRFIEINTD 369 (727)
T ss_dssp C---------------
T ss_pred c------cceeEeecc
Confidence 3 445555555
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.1e-16 Score=155.09 Aligned_cols=171 Identities=19% Similarity=0.279 Sum_probs=141.7
Q ss_pred CCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCC
Q 036117 411 NLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG 490 (641)
Q Consensus 411 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~ 490 (641)
.+.++..++++++.+.+ ++ .+..+++|++|++++|.++ .++ .+..+. +|++|++++|++++. +. +..+
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~------~L~~L~L~~N~i~~~-~~-l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFT------NLKELHLSHNQISDL-SP-LKDL 84 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCT------TCCEEECCSSCCCCC-GG-GTTC
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCC------CCCEEECCCCccCCC-hh-hccC
Confidence 34567788899999884 33 5778999999999999987 455 566666 899999999999854 44 8899
Q ss_pred CCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeC
Q 036117 491 GNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRI 570 (641)
Q Consensus 491 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 570 (641)
++|+.|++++|++.+ +|. +.. ++|+.|++++|++.+. ..++.+++|+.|++++|++++. + .+..+++|++|++
T Consensus 85 ~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 85 TKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDL 157 (263)
T ss_dssp SSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEEC
T ss_pred CCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEEC
Confidence 999999999999985 343 233 8999999999999864 3588999999999999999875 3 6889999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEeCCCCcCccc
Q 036117 571 SGNRIKGGIPAELGNLTYLQNLDIFDNQLTGK 602 (641)
Q Consensus 571 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 602 (641)
++|++++. ..+..+++|+.|++++|++.+.
T Consensus 158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 158 HGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 99999866 6688999999999999999854
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=4.5e-16 Score=143.07 Aligned_cols=161 Identities=18% Similarity=0.233 Sum_probs=128.9
Q ss_pred ccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCcc-ccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCC
Q 036117 469 LRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPE-SLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLG 547 (641)
Q Consensus 469 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 547 (641)
-++++++++.++ .+|..+.. .++.|++++|++.+..+. .+..+++|++|++++|++++..|..|+.+++|++|+++
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 478999999985 77776644 899999999999866654 48899999999999999998889999999999999999
Q ss_pred CCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCc-cccCCCCCCEEeCcCCCCccc
Q 036117 548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPA-QLFRSSFLIRLNLRRNQLSDK 626 (641)
Q Consensus 548 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~-~l~~~~~L~~l~l~~n~l~~~ 626 (641)
+|++++..+..+..+++|++|++++|++++..|..+..+++|++|+|++|++.+..+. ++.. .++...+..+.....
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~ 164 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCG 164 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCC
Confidence 9999998888899999999999999999988899999999999999999999877652 2211 122223444444445
Q ss_pred CcccccCC
Q 036117 627 IPAEIGKL 634 (641)
Q Consensus 627 ~p~~~~~l 634 (641)
.|..+...
T Consensus 165 ~P~~l~~~ 172 (192)
T 1w8a_A 165 APSKVRDV 172 (192)
T ss_dssp SSTTTTTS
T ss_pred CChHHcCC
Confidence 55554443
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=5.8e-17 Score=156.99 Aligned_cols=122 Identities=20% Similarity=0.298 Sum_probs=55.4
Q ss_pred CCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEec
Q 036117 89 NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIG 168 (641)
Q Consensus 89 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 168 (641)
+++.++++++.+++. + .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +.++++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 344444555554422 2 34455555555555555552 33 34555555555555555553322 4455555555555
Q ss_pred cccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCC
Q 036117 169 ANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIM 220 (641)
Q Consensus 169 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 220 (641)
+|.+++.... .. ++|++|++++|.+..++ .+..+++|++|++++|.+.
T Consensus 94 ~N~l~~l~~~--~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 94 RNRLKNLNGI--PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp SSCCSCCTTC--CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCC
T ss_pred CCccCCcCcc--cc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCC
Confidence 5554443221 11 44444444444443332 2334444444444444433
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=4.3e-17 Score=180.60 Aligned_cols=183 Identities=20% Similarity=0.180 Sum_probs=120.5
Q ss_pred cCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCC
Q 036117 428 SIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPI 507 (641)
Q Consensus 428 ~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 507 (641)
..+..+..++.|+.|++++|.+. .+|..+..+. +|++|+|++|.++ .+|..+..+++|+.|++++|++. .+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~------~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l 285 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD------FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL 285 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCC------SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SC
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCC------CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-cc
Confidence 45667788888999999998887 7777777776 8999999999888 88888889999999999999988 77
Q ss_pred ccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCC-CCEEeCcCCcCcccCCccccCC
Q 036117 508 PESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTN-LSNFRISGNRIKGGIPAELGNL 586 (641)
Q Consensus 508 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l 586 (641)
|..+.++++|++|+|++|.+. .+|..|+.+++|+.|+|++|++++.+|..+..+.. +..+++++|.+++.+|..
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~---- 360 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE---- 360 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----
T ss_pred ChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc----
Confidence 888999999999999999887 67878999999999999999999988888765432 234789999999888864
Q ss_pred CCCCEEeCCCC--------cCcccCCccccCCCCCCEEeCcCCCCccc
Q 036117 587 TYLQNLDIFDN--------QLTGKIPAQLFRSSFLIRLNLRRNQLSDK 626 (641)
Q Consensus 587 ~~L~~L~L~~n--------~l~~~ip~~l~~~~~L~~l~l~~n~l~~~ 626 (641)
|+.|++++| .+.+.++..+..+..+....+++|-+.+.
T Consensus 361 --l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~ 406 (727)
T 4b8c_D 361 --RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQH 406 (727)
T ss_dssp -------------------------------------------CCCGG
T ss_pred --cceeEeecccccccccCCccccccchhhcccccceeeeeccccccc
Confidence 556667766 33333344445566667778888887643
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=8.7e-16 Score=141.14 Aligned_cols=170 Identities=15% Similarity=0.224 Sum_probs=130.6
Q ss_pred CEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCc-cccCCCCCceEeccCCcccCCCccccccCCCCc
Q 036117 440 VKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPP-GICRGGNLIYLTANVNKLVGPIPESLWNCTGLT 518 (641)
Q Consensus 440 ~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 518 (641)
++++++++.++ .+|..+.. ++++|++++|.+++..+. .+..++.|+.|++++|++.+..|..|.++++|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--------~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--------HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--------TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CEEEcCCCCcC-cCccCCCC--------CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 78999999885 67765432 699999999999866554 488899999999999999988888999999999
Q ss_pred EEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCcc-ccCCCCCCEEeCCCC
Q 036117 519 RVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAE-LGNLTYLQNLDIFDN 597 (641)
Q Consensus 519 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n 597 (641)
+|++++|++.+..+..|+.+++|++|++++|++++..|..+..+++|++|++++|++.+..+-. +. ..++...+..+
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~ 159 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGG 159 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGG
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCC
Confidence 9999999999888888999999999999999999999999999999999999999998664421 11 11222334445
Q ss_pred cCcccCCccccCCCCCCEEeCcCCCC
Q 036117 598 QLTGKIPAQLFRSSFLIRLNLRRNQL 623 (641)
Q Consensus 598 ~l~~~ip~~l~~~~~L~~l~l~~n~l 623 (641)
......|..+.. ....++..+.+
T Consensus 160 ~~~C~~P~~l~~---~~l~~l~~~~~ 182 (192)
T 1w8a_A 160 AARCGAPSKVRD---VQIKDLPHSEF 182 (192)
T ss_dssp GCBBCSSTTTTT---SBGGGSCTTTC
T ss_pred CCCCCCChHHcC---CChhhCcHhhc
Confidence 555455654433 23335555554
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=7.4e-16 Score=138.51 Aligned_cols=137 Identities=23% Similarity=0.218 Sum_probs=103.7
Q ss_pred CCCceEeccCCccc-CCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEe
Q 036117 491 GNLIYLTANVNKLV-GPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFR 569 (641)
Q Consensus 491 ~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 569 (641)
+.++.|++++|++. +.+|..+..+++|++|++++|.+.+. ..++.+++|++|++++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56777777777776 56676677778888888888887755 6677788888888888888877777777788888888
Q ss_pred CcCCcCcccC-CccccCCCCCCEEeCCCCcCcccCC---ccccCCCCCCEEeCcCCCCcccCccc
Q 036117 570 ISGNRIKGGI-PAELGNLTYLQNLDIFDNQLTGKIP---AQLFRSSFLIRLNLRRNQLSDKIPAE 630 (641)
Q Consensus 570 L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~ip---~~l~~~~~L~~l~l~~n~l~~~~p~~ 630 (641)
+++|.+++.. +..+..+++|++|++++|++++..+ ..+..+++|+.|++++|.+. .+|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 8888887532 2678888888888888888874433 36777888888888888876 44543
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=5.3e-16 Score=139.48 Aligned_cols=135 Identities=19% Similarity=0.216 Sum_probs=86.7
Q ss_pred CccEEEccCCccc-ccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeC
Q 036117 468 FLRNVSFSYNNFS-GKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDL 546 (641)
Q Consensus 468 ~L~~L~ls~n~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 546 (641)
++++|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|++.+..|..+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 4555555555554 45555555566666666666665543 45666667777777777776656666566777777777
Q ss_pred CCCcccccC-ChhhhcCCCCCEEeCcCCcCcccCC---ccccCCCCCCEEeCCCCcCcccCCc
Q 036117 547 GDNQLSGVL-TSNWGKCTNLSNFRISGNRIKGGIP---AELGNLTYLQNLDIFDNQLTGKIPA 605 (641)
Q Consensus 547 s~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~~~ip~ 605 (641)
++|++++.. +..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+. .+|.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 777776542 2566677777777777777764444 36677777777777777765 4554
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=9.7e-16 Score=134.70 Aligned_cols=127 Identities=24% Similarity=0.240 Sum_probs=84.3
Q ss_pred CCCceEeccCCccc-CCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEe
Q 036117 491 GNLIYLTANVNKLV-GPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFR 569 (641)
Q Consensus 491 ~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 569 (641)
++++.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..++.+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44556666666655 45555566666777777777766654 5566677777777777777766666666677777777
Q ss_pred CcCCcCccc-CCccccCCCCCCEEeCCCCcCcccCC---ccccCCCCCCEEeCc
Q 036117 570 ISGNRIKGG-IPAELGNLTYLQNLDIFDNQLTGKIP---AQLFRSSFLIRLNLR 619 (641)
Q Consensus 570 L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~ip---~~l~~~~~L~~l~l~ 619 (641)
+++|++++. .+..++.+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777777653 33667777777777777777764433 356667777777765
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=6.7e-16 Score=135.72 Aligned_cols=126 Identities=20% Similarity=0.331 Sum_probs=113.9
Q ss_pred CCCCcEEECCCCcCc-cccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEE
Q 036117 514 CTGLTRVRLEQNRLD-GDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNL 592 (641)
Q Consensus 514 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 592 (641)
.++++.|++++|.+. +.+|..++.+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 367999999999998 78888889999999999999999976 678999999999999999998789888889999999
Q ss_pred eCCCCcCccc-CCccccCCCCCCEEeCcCCCCcccCc---ccccCCCCCcCCC
Q 036117 593 DIFDNQLTGK-IPAQLFRSSFLIRLNLRRNQLSDKIP---AEIGKLSRLQYLD 641 (641)
Q Consensus 593 ~L~~n~l~~~-ip~~l~~~~~L~~l~l~~n~l~~~~p---~~~~~l~~L~~l~ 641 (641)
++++|.+++. .|..+..+++|++|++++|++++..+ ..++.+++|+.||
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence 9999999863 34788999999999999999998776 5789999999876
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=1.2e-15 Score=153.25 Aligned_cols=101 Identities=15% Similarity=0.118 Sum_probs=47.0
Q ss_pred CCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCC-eeeccCccCCCCCCcCCCCCCCCCEE
Q 036117 255 FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQ-RLNLKSAGLNSSIPKELGFCANLTFL 333 (641)
Q Consensus 255 l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L 333 (641)
+++|+++++++|.++......|..+++|+.+++.+| +....+.+|.++++|+ .+++.+ .+....+..|..|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 445555555555444333334445555555555444 3333344444555554 555444 3333333444444555555
Q ss_pred EccCccccccCchhhhcCCCCCeE
Q 036117 334 ELSINNLTGSLPLSLASLRQISEL 357 (641)
Q Consensus 334 ~l~~n~l~~~~~~~l~~~~~L~~L 357 (641)
+++.|+++...+.+|..+++|+.+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEE
T ss_pred EeCCCccCccchhhhcCCcchhhh
Confidence 544444443333444444444444
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=1.5e-15 Score=152.55 Aligned_cols=100 Identities=12% Similarity=0.105 Sum_probs=48.2
Q ss_pred CCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCC-EEeCCCCcCcccCCccccCCCCCCEE
Q 036117 538 YPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQ-NLDIFDNQLTGKIPAQLFRSSFLIRL 616 (641)
Q Consensus 538 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~ip~~l~~~~~L~~l 616 (641)
+++|+.+++++|+++...+.+|.++++|+++++.+| +....+..|.++++|+ .+++.+ .++..-+..|..|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 445555555555554444444555555555555554 4333334455555555 555554 3432222344445555555
Q ss_pred eCcCCCCcccCcccccCCCCCcC
Q 036117 617 NLRRNQLSDKIPAEIGKLSRLQY 639 (641)
Q Consensus 617 ~l~~n~l~~~~p~~~~~l~~L~~ 639 (641)
++++|+++..-+..|.++++|+.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCE
T ss_pred EeCCCccCccchhhhcCCcchhh
Confidence 55555555444445555555543
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.4e-14 Score=131.28 Aligned_cols=134 Identities=21% Similarity=0.247 Sum_probs=99.3
Q ss_pred CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCC
Q 036117 468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLG 547 (641)
Q Consensus 468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 547 (641)
..+.++++++.++ .+|..+ .+.++.|++++|++.+..+..+..+++|++|++++|++.+..+..++.+++|++|+++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 3567888888876 455443 3578888888888876655667777888888888888876666667778888888888
Q ss_pred CCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCC
Q 036117 548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIP 604 (641)
Q Consensus 548 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip 604 (641)
+|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 888887766667777888888888888875555556777888888888888776554
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=132.48 Aligned_cols=128 Identities=23% Similarity=0.264 Sum_probs=85.9
Q ss_pred cEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCC
Q 036117 470 RNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDN 549 (641)
Q Consensus 470 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 549 (641)
+.++++++.++ .+|..+. +.++.|++++|++. .+|..+.++++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 35555555554 4444332 45666666666665 55566677777777777777777666666777777777777777
Q ss_pred cccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcc
Q 036117 550 QLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG 601 (641)
Q Consensus 550 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 601 (641)
++++..+..+..+++|++|+|++|+++...+..|..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7777666677777777777777777775555557777777777777777654
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1.8e-14 Score=130.52 Aligned_cols=132 Identities=22% Similarity=0.279 Sum_probs=67.5
Q ss_pred ceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCC
Q 036117 494 IYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGN 573 (641)
Q Consensus 494 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n 573 (641)
+.++++++++. .+|..+ .++|+.|++++|++.+..+..++.+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 44555555544 233222 245555555555555444444555555555555555555444444555555555555555
Q ss_pred cCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCc
Q 036117 574 RIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIP 628 (641)
Q Consensus 574 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p 628 (641)
++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 5554444445555555555555555553222223445555555555555554433
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=2.6e-14 Score=131.15 Aligned_cols=128 Identities=22% Similarity=0.288 Sum_probs=114.1
Q ss_pred ceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCC
Q 036117 494 IYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGN 573 (641)
Q Consensus 494 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n 573 (641)
+.++++++++. .+|..+. +++++|++++|.+. .+|..+..+++|+.|++++|++++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57899999887 6665543 68999999999998 67788999999999999999999998899999999999999999
Q ss_pred cCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcc
Q 036117 574 RIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSD 625 (641)
Q Consensus 574 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~ 625 (641)
++++..|..|..+++|++|+|++|.+++..+..+..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9998888899999999999999999995444567889999999999999864
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=4e-13 Score=137.72 Aligned_cols=266 Identities=11% Similarity=0.109 Sum_probs=179.2
Q ss_pred CCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEE
Q 036117 86 AFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLL 165 (641)
Q Consensus 86 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 165 (641)
.+..++.+.+..+ ++..-..+|.++ +|+.+++..+ ++..-..+|.++ +|+.+.+.. .+....+.+|.++++|+.+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 3466777777543 443445566664 6777777665 544444556664 577777775 5555566677788888888
Q ss_pred EeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCc-hhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcc
Q 036117 166 RIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP-SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF 244 (641)
Q Consensus 166 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 244 (641)
++++|.+..+....|. +.+|+.+.+..+ +..++ ..|.++++|+.+++..+ +. .++...|.+ .+|+.+.+. +.+
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCc
Confidence 8877777777777776 477888887643 55554 35677778888888764 33 455555566 678888883 445
Q ss_pred cccCCcccCCCCCCCEEEcCCCcCC-----ccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCC
Q 036117 245 EGEIPREIKTFPKLRHLKLGQNKLT-----GTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSS 319 (641)
Q Consensus 245 ~~~~~~~l~~l~~L~~L~L~~~~l~-----~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 319 (641)
+......|..|++|+.+.+.++.+. ......|..+++|+.+.+.+ .+......+|.++++|+.+.+..+ +...
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 5455667788888888888776554 23445677788888888874 466566667888888888888544 5555
Q ss_pred CCcCCCCCCCCCEEEccCccccccCchhhhcCC-CCCeEeCCccccc
Q 036117 320 IPKELGFCANLTFLELSINNLTGSLPLSLASLR-QISELGISNNQLS 365 (641)
Q Consensus 320 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~-~L~~L~l~~n~~~ 365 (641)
...+|..+ +|+.+++.+|......+..+..++ .++.+.+..+.+.
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 56677788 888888888877765556666664 6777877766544
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=4e-14 Score=128.10 Aligned_cols=134 Identities=13% Similarity=0.144 Sum_probs=98.0
Q ss_pred ccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCC
Q 036117 487 ICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLS 566 (641)
Q Consensus 487 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 566 (641)
+..+..|+.|++++|++. .+|......++|++|++++|.+.+. ..++.+++|++|++++|++++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 445666777777777666 3343222234788888888888764 5677788888888888888866555568888888
Q ss_pred EEeCcCCcCcccCCc--cccCCCCCCEEeCCCCcCcccCCcc----ccCCCCCCEEeCcCCCCcc
Q 036117 567 NFRISGNRIKGGIPA--ELGNLTYLQNLDIFDNQLTGKIPAQ----LFRSSFLIRLNLRRNQLSD 625 (641)
Q Consensus 567 ~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~ip~~----l~~~~~L~~l~l~~n~l~~ 625 (641)
+|++++|++. .+|. .+..+++|+.|++++|++. .+|.. +..++.|+.|++++|....
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 8888888885 4555 6788888888888888887 56664 7778888888888887653
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.50 E-value=1.4e-12 Score=133.71 Aligned_cols=270 Identities=11% Similarity=0.043 Sum_probs=147.6
Q ss_pred CCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEE
Q 036117 110 NATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDL 189 (641)
Q Consensus 110 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 189 (641)
.+..++.+.+..+ ++..-..+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+..+....|.++++|+.+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 3466666666543 443344556664 6777777655 555555666664 577777775 5666667777777777777
Q ss_pred EcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCC
Q 036117 190 WLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT 269 (641)
Q Consensus 190 ~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~ 269 (641)
++..|.+..++.....+.+|+.+.+..+ +. .++...|.++++|+.+++..+ ++......|.. .+|+.+.+.. .+.
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC
T ss_pred ecCCCcceEechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc
Confidence 7777777777665555677777777643 33 555556667777777777653 33333444544 4666666632 344
Q ss_pred ccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhh
Q 036117 270 GTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLA 349 (641)
Q Consensus 270 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 349 (641)
......|..+++|+.+.+.++.+... .........|..|++|+.+++.+ .+......+|.
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~-------------------~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~ 320 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDD-------------------PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLG 320 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCC-------------------TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTT
T ss_pred EEChhHhhCCCCCCEEEeCCccccCC-------------------cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhc
Confidence 33344555666666666655543300 00012223344444555555442 23333334444
Q ss_pred cCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCC-CCCeEecccCc
Q 036117 350 SLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLT-NLFDLQLANNF 424 (641)
Q Consensus 350 ~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~ 424 (641)
.|++|+.+.+..+ ++.+ -...|..+ +|+.+++.+|.........|.+++ .++.+.+..+.
T Consensus 321 ~c~~L~~l~lp~~-l~~I-------------~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 321 GNRKVTQLTIPAN-VTQI-------------NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TCCSCCEEEECTT-CCEE-------------CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCCCccEEEECcc-ccEE-------------cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 5555555554322 1111 12344455 566666666655544444455553 55566665544
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=1.8e-16 Score=146.73 Aligned_cols=150 Identities=21% Similarity=0.214 Sum_probs=115.0
Q ss_pred CccEEEccCCcccccCCc------cccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCC
Q 036117 468 FLRNVSFSYNNFSGKLPP------GICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDL 541 (641)
Q Consensus 468 ~L~~L~ls~n~l~~~~~~------~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 541 (641)
.++.++++.+.+++.+|. .+..+++|+.|++++|++.+ +| .+.++++|++|++++|.+. .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 577777777777777665 78888888888888888875 56 7788888888888888887 456666667888
Q ss_pred cEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCC-ccccCCCCCCEEeCCCCcCcccCCcc----------ccCC
Q 036117 542 QYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIP-AELGNLTYLQNLDIFDNQLTGKIPAQ----------LFRS 610 (641)
Q Consensus 542 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~ip~~----------l~~~ 610 (641)
++|++++|++++. | .+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+.+|.. +..+
T Consensus 96 ~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 96 EELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp SEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 8888888888863 3 57788888888888888874322 46788888888888888887666543 6677
Q ss_pred CCCCEEeCcCCCCc
Q 036117 611 SFLIRLNLRRNQLS 624 (641)
Q Consensus 611 ~~L~~l~l~~n~l~ 624 (641)
+.|+.|| +|+++
T Consensus 174 ~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 174 PNLKKLD--GMPVD 185 (198)
T ss_dssp SSCSEEC--CGGGT
T ss_pred CCcEEEC--CcccC
Confidence 8888776 56554
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.48 E-value=2.5e-12 Score=132.44 Aligned_cols=333 Identities=14% Similarity=0.080 Sum_probs=162.0
Q ss_pred ccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcC
Q 036117 244 FEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKE 323 (641)
Q Consensus 244 ~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 323 (641)
++.....+|.+|.+|+++.+..+ ++......|.++++|+.+++.++ +.......|.++.+|+.+.+..+ +.......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 44445566777788888887643 54344455777777777777544 33334445666666666554332 21222223
Q ss_pred CCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcC
Q 036117 324 LGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSG 403 (641)
Q Consensus 324 l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 403 (641)
+..+..+....... ....... .+..+++|+.+.+.++. ..
T Consensus 136 F~~~~~~~~~~~~~--~~~i~~~-------------------------------------aF~~c~~L~~i~l~~~~-~~ 175 (394)
T 4fs7_A 136 FKGCDFKEITIPEG--VTVIGDE-------------------------------------AFATCESLEYVSLPDSM-ET 175 (394)
T ss_dssp TTTCCCSEEECCTT--CCEECTT-------------------------------------TTTTCTTCCEEECCTTC-CE
T ss_pred eecccccccccCcc--ccccchh-------------------------------------hhcccCCCcEEecCCcc-ce
Confidence 33332221111111 1111122 34444555555554332 11
Q ss_pred CchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccC
Q 036117 404 PIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKL 483 (641)
Q Consensus 404 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 483 (641)
....+|.++.+|+.+++..+ +.......|.++..|+.+.+..+... +.+...... .|+.+.+.... +..-
T Consensus 176 I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~------~l~~i~ip~~~-~~i~ 245 (394)
T 4fs7_A 176 LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKT------GVKNIIIPDSF-TELG 245 (394)
T ss_dssp ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTC------CCCEEEECTTC-CEEC
T ss_pred eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccC------CCceEEECCCc-eecc
Confidence 23334555555555555443 22222334455555555544443221 011111111 45555443321 1112
Q ss_pred CccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCC
Q 036117 484 PPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCT 563 (641)
Q Consensus 484 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~ 563 (641)
...+..+..++.+.+..+... .....+..+..++.+......+. ...|..+.+|+.+.+.++ +......+|.+++
T Consensus 246 ~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~ 320 (394)
T 4fs7_A 246 KSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCT 320 (394)
T ss_dssp SSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCT
T ss_pred cccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCC
Confidence 233445555666655544322 22344556666666665544322 234555666666666544 4444455666666
Q ss_pred CCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccC-CccccCCCCCCEEeCcCCCCcccCcccccCCCCCcC
Q 036117 564 NLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKI-PAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQY 639 (641)
Q Consensus 564 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i-p~~l~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~ 639 (641)
+|+.+++..+ ++..-..+|.++++|+.+++..+ ++ .| ...+..|++|+.+++..+- ..+...|.++++|+.
T Consensus 321 ~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~~--~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 321 SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKRL--EQYRYDFEDTTKFKW 392 (394)
T ss_dssp TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGGG--GGGGGGBCTTCEEEE
T ss_pred CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCCC--EEhhheecCCCCCcE
Confidence 7777776543 44344456666777777777655 44 33 3455566677777765442 133455666666553
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.48 E-value=1.9e-12 Score=133.43 Aligned_cols=62 Identities=10% Similarity=-0.006 Sum_probs=31.6
Q ss_pred chhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEec
Q 036117 105 PAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIG 168 (641)
Q Consensus 105 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 168 (641)
..+|.+|++|+.+++..+ ++..-..+|.+|++|+.+++..+ ++.....+|.++++|+.+.+.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 345666666666666532 43333345556666666666433 333334455555555554443
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=6.1e-14 Score=126.88 Aligned_cols=127 Identities=20% Similarity=0.193 Sum_probs=108.5
Q ss_pred ccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCC
Q 036117 510 SLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYL 589 (641)
Q Consensus 510 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 589 (641)
.+.++++|+.|++++|++.. ++......++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 46778999999999999985 454334445999999999999976 578999999999999999996655656999999
Q ss_pred CEEeCCCCcCcccCCc--cccCCCCCCEEeCcCCCCcccCccc----ccCCCCCcCCC
Q 036117 590 QNLDIFDNQLTGKIPA--QLFRSSFLIRLNLRRNQLSDKIPAE----IGKLSRLQYLD 641 (641)
Q Consensus 590 ~~L~L~~n~l~~~ip~--~l~~~~~L~~l~l~~n~l~~~~p~~----~~~l~~L~~l~ 641 (641)
++|++++|.+. .+|. .+..+++|+.|++++|+++ .+|.. ++.+++|+.||
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeC
Confidence 99999999996 6776 7889999999999999998 56664 88999998876
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=7.2e-16 Score=142.64 Aligned_cols=153 Identities=17% Similarity=0.252 Sum_probs=88.3
Q ss_pred CCCCCCEEEccCCcCcccCCc------chhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCc
Q 036117 435 NLSSLVKLSLSSNQLTGTLPP------EIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIP 508 (641)
Q Consensus 435 ~l~~L~~L~ls~n~l~~~~~~------~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 508 (641)
..+.++.++++++.+.+.+|. .+..+. +|++|++++|.+++ +| .+..+++|+.|++++|++. .+|
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~------~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~ 86 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLK------ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIE 86 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTT------TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCS
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCC------CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-ccc
Confidence 344555555555555555554 555555 56666666666654 44 5556666666666666665 455
Q ss_pred cccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCC-hhhhcCCCCCEEeCcCCcCcccCCcc-----
Q 036117 509 ESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLT-SNWGKCTNLSNFRISGNRIKGGIPAE----- 582 (641)
Q Consensus 509 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~----- 582 (641)
..+..+++|++|++++|++.+. + .++.+++|+.|++++|++++..+ ..+..+++|++|++++|++.+..|..
T Consensus 87 ~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 164 (198)
T 1ds9_A 87 NLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164 (198)
T ss_dssp SHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred chhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHH
Confidence 5555556666666666666542 2 35556666666666666654322 34556666666666666665544432
Q ss_pred -----ccCCCCCCEEeCCCCcCc
Q 036117 583 -----LGNLTYLQNLDIFDNQLT 600 (641)
Q Consensus 583 -----l~~l~~L~~L~L~~n~l~ 600 (641)
+..+++|+.|| ++.++
T Consensus 165 ~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 165 YRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHHHhCCCcEEEC--CcccC
Confidence 55566666665 44443
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=1.7e-12 Score=116.42 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=89.5
Q ss_pred CceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcC
Q 036117 493 LIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISG 572 (641)
Q Consensus 493 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~ 572 (641)
.+.+++++|++. .+|..+. ++|++|++++|++.+..+..|+.+++|++|+|++|++++..+..+..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 468888888887 4665543 7888999999999888888888899999999999998877777788888999999999
Q ss_pred CcCcccCCccccCCCCCCEEeCCCCcCcccC
Q 036117 573 NRIKGGIPAELGNLTYLQNLDIFDNQLTGKI 603 (641)
Q Consensus 573 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i 603 (641)
|++++..+..|..+++|++|+|++|++.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9988766667888899999999999887543
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=2.2e-12 Score=115.65 Aligned_cols=108 Identities=21% Similarity=0.225 Sum_probs=90.2
Q ss_pred CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCC
Q 036117 468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLG 547 (641)
Q Consensus 468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 547 (641)
..+.+++++|.++ .+|..+. +.++.|++++|++.+..|..|.++++|++|++++|++.+..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4678889988887 5676553 788899999999988878888888999999999999887777778888999999999
Q ss_pred CCcccccCChhhhcCCCCCEEeCcCCcCccc
Q 036117 548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGG 578 (641)
Q Consensus 548 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 578 (641)
+|++++..+..+..+++|++|+|++|++.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9998877777788888999999999988744
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=4.4e-12 Score=114.04 Aligned_cols=105 Identities=19% Similarity=0.302 Sum_probs=87.3
Q ss_pred ceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCC
Q 036117 494 IYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGN 573 (641)
Q Consensus 494 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n 573 (641)
+.++++++++. .+|..+. ++|++|++++|++.+..+..|+.+++|++|+|++|++++..+..+..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888885 6676554 78899999999998888888888999999999999988776667788889999999999
Q ss_pred cCcccCCccccCCCCCCEEeCCCCcCcc
Q 036117 574 RIKGGIPAELGNLTYLQNLDIFDNQLTG 601 (641)
Q Consensus 574 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 601 (641)
++++..+..|..+++|++|+|++|++..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9886665668888999999999998874
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=8.7e-12 Score=112.09 Aligned_cols=86 Identities=26% Similarity=0.256 Sum_probs=40.5
Q ss_pred CCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEc
Q 036117 112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWL 191 (641)
Q Consensus 112 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 191 (641)
++|++|++++|.+++..|..|+.+++|++|++++|++++..+..|.++++|++|++++|.+..+.+..|..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 34444444444444444444444444555555544444333333444444444444444444444444444455555555
Q ss_pred CCCCCC
Q 036117 192 DYNLLE 197 (641)
Q Consensus 192 ~~~~~~ 197 (641)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 555443
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=1.4e-13 Score=139.65 Aligned_cols=189 Identities=16% Similarity=0.098 Sum_probs=120.7
Q ss_pred CCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccc-cCCCCCceEeccCCcccCCCcccc---
Q 036117 436 LSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGI-CRGGNLIYLTANVNKLVGPIPESL--- 511 (641)
Q Consensus 436 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~l--- 511 (641)
.+.|++|++++|.++......+...-. ...++|++|++++|.+++.....+ ..+++|+.|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLG-SGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHS-SCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHh-hCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 467899999999987543333332200 011279999999998865433322 234578888998888865433333
Q ss_pred --ccCCCCcEEECCCCcCccc----cCcccCCCCCCcEEeCCCCcccccC----ChhhhcCCCCCEEeCcCCcCccc---
Q 036117 512 --WNCTGLTRVRLEQNRLDGD----ITNALGIYPDLQYIDLGDNQLSGVL----TSNWGKCTNLSNFRISGNRIKGG--- 578 (641)
Q Consensus 512 --~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~--- 578 (641)
...++|++|++++|.++.. ++..+...++|++|+|++|.+++.. +..+...++|++|+|++|.+++.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 2467888888888888642 3444567788888888888887543 45566777888888888888643
Q ss_pred -CCccccCCCCCCEEeCCCCcCcccCCccccCC---C--CCCEEe--CcCCCCcc
Q 036117 579 -IPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS---S--FLIRLN--LRRNQLSD 625 (641)
Q Consensus 579 -~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~---~--~L~~l~--l~~n~l~~ 625 (641)
++..+...++|++|+|++|.+++.-...+..+ . .++.+. +..|.++.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 33445566888888888888875544444332 1 166666 66666543
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.28 E-value=1.3e-09 Score=112.05 Aligned_cols=132 Identities=14% Similarity=0.194 Sum_probs=83.0
Q ss_pred ccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCC
Q 036117 485 PGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTN 564 (641)
Q Consensus 485 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 564 (641)
..+.++..|+.+.+..+... ....+|.+|+.|+.+.+. +.+.......|..+.+|+.++|..+ ++.....+|.+|.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 34566777777777554332 334567778888888875 3455445567778888888888754 55556677888888
Q ss_pred CCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCC
Q 036117 565 LSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQL 623 (641)
Q Consensus 565 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l 623 (641)
|+.+.+..+ ++..-..+|.++++|+.+++.++.... ..+..+..|+.+.+..+.+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 888888654 554455678888888888888876542 3456677788887776654
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=2.3e-13 Score=138.13 Aligned_cols=184 Identities=17% Similarity=0.127 Sum_probs=129.5
Q ss_pred CCCCCeEecccCcCCccCccc----cc-CCCCCCEEEccCCcCcccCCcchh-cCCCCCCCCCccEEEccCCcccccCCc
Q 036117 412 LTNLFDLQLANNFFNGSIPST----IG-NLSSLVKLSLSSNQLTGTLPPEIG-NSKSDFGPRFLRNVSFSYNNFSGKLPP 485 (641)
Q Consensus 412 l~~L~~L~l~~n~l~~~~~~~----l~-~l~~L~~L~ls~n~l~~~~~~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~ 485 (641)
.+.|+.|++++|.++...... +. ..++|++|++++|.+++.....+. .+. +|++|++++|.+++....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~------~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL------RARKLGLQLNSLGPEACK 144 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH------TEEEEECCSSCCCHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH------hccHhhcCCCCCCHHHHH
Confidence 468999999999987543332 32 236999999999998754333332 223 699999999998764433
Q ss_pred cc-----cCCCCCceEeccCCcccC----CCccccccCCCCcEEECCCCcCccc----cCcccCCCCCCcEEeCCCCccc
Q 036117 486 GI-----CRGGNLIYLTANVNKLVG----PIPESLWNCTGLTRVRLEQNRLDGD----ITNALGIYPDLQYIDLGDNQLS 552 (641)
Q Consensus 486 ~~-----~~~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~ 552 (641)
.+ ...+.|+.|++++|.+.. .++..+..+++|++|++++|.+... ++..+...+.|++|+|++|.++
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 33 246789999999999865 2344567789999999999999753 3556677889999999999998
Q ss_pred cc----CChhhhcCCCCCEEeCcCCcCcccCCccccCC---CC--CCEEe--CCCCcCcc
Q 036117 553 GV----LTSNWGKCTNLSNFRISGNRIKGGIPAELGNL---TY--LQNLD--IFDNQLTG 601 (641)
Q Consensus 553 ~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l---~~--L~~L~--L~~n~l~~ 601 (641)
+. ++..+...++|++|+|++|.+++.....+..+ .. ++.+. +..+.+..
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 64 33455667999999999999976544444333 21 67776 67776653
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.25 E-value=1e-09 Score=112.83 Aligned_cols=157 Identities=10% Similarity=0.143 Sum_probs=83.4
Q ss_pred CCCCCcccCCCC-CCCEEEcCCCCCCCCc-hhhcCCCCCcEEEeeCCc---CCCCCChhhhcCCCCCcEEeccCCccccc
Q 036117 173 EDPDPVKFKGMA-SLTDLWLDYNLLEKFP-SFIAECSKLMFLDLSDNL---IMGHIPIEQLTHLENLEYLNLTKNSFEGE 247 (641)
Q Consensus 173 ~~~~~~~l~~l~-~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~---~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 247 (641)
+.+...+|.++. .|+.+.+..+ ++.+. ..|.+|++|+.+.+..+. ++ .+....|..+..|+.+.+..+ ++..
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-ccee
Confidence 344556777774 5888887653 44443 356777888888776653 32 445555667777777666443 3334
Q ss_pred CCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCC
Q 036117 248 IPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFC 327 (641)
Q Consensus 248 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 327 (641)
....|..+.+|+.+.+... +.......+..+..|+.+.+.++ +......+|.+ ..|+.+.+..+-. ......+..+
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c 204 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSEC 204 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTC
T ss_pred hhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhc
Confidence 4455667777777777543 22233344556666666666543 22222223322 3455555543211 1222334444
Q ss_pred CCCCEEEcc
Q 036117 328 ANLTFLELS 336 (641)
Q Consensus 328 ~~L~~L~l~ 336 (641)
..++.....
T Consensus 205 ~~l~~~~~~ 213 (394)
T 4gt6_A 205 FALSTITSD 213 (394)
T ss_dssp TTCCEEEEC
T ss_pred cccceeccc
Confidence 455444443
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=1.6e-10 Score=116.83 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=58.8
Q ss_pred EEEccCC-cccccCCccccCCCCCceEeccC-CcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCC
Q 036117 471 NVSFSYN-NFSGKLPPGICRGGNLIYLTANV-NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGD 548 (641)
Q Consensus 471 ~L~ls~n-~l~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 548 (641)
.++++++ .++ .+|. +..+++|+.|++++ |++.+..+..|.++++|+.|+|++|++.+..+..|+.+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4466665 555 3555 55556666666654 555555555555666666666666666655555555666666666666
Q ss_pred CcccccCChhhhcCCCCCEEeCcCCcCc
Q 036117 549 NQLSGVLTSNWGKCTNLSNFRISGNRIK 576 (641)
Q Consensus 549 n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 576 (641)
|++++..+..+..++ |+.|+|.+|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666554444444443 666666666554
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=2.6e-10 Score=115.26 Aligned_cols=106 Identities=20% Similarity=0.144 Sum_probs=91.7
Q ss_pred ceEeccCC-cccCCCccccccCCCCcEEECCC-CcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCc
Q 036117 494 IYLTANVN-KLVGPIPESLWNCTGLTRVRLEQ-NRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRIS 571 (641)
Q Consensus 494 ~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 571 (641)
..++.+++ ++. .+|. +..+++|++|+|++ |.+.+..+..|+.+++|+.|+|++|++++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 676 5787 89999999999996 99998888889999999999999999999999999999999999999
Q ss_pred CCcCcccCCccccCCCCCCEEeCCCCcCccc
Q 036117 572 GNRIKGGIPAELGNLTYLQNLDIFDNQLTGK 602 (641)
Q Consensus 572 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 602 (641)
+|++++..+..+..++ |+.|+|.+|++...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9999976666676666 99999999998743
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.97 E-value=8.1e-08 Score=98.11 Aligned_cols=62 Identities=11% Similarity=0.066 Sum_probs=34.8
Q ss_pred CCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccC
Q 036117 384 EIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSS 446 (641)
Q Consensus 384 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~ 446 (641)
.+..+.+|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++..-..+|.+|.+|+.+.+..
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 3455566666666655555444555666666666666543 3323334566666666666644
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.90 E-value=2.7e-07 Score=94.24 Aligned_cols=97 Identities=13% Similarity=0.095 Sum_probs=52.3
Q ss_pred ccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCC
Q 036117 487 ICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLS 566 (641)
Q Consensus 487 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 566 (641)
+.++..|+.+.+..+ +......+|.+|++|+.+.+.++.+......+|.++.+|+.++|..+ ++.....+|.+|++|+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 334444444444322 22122234566666666666666565555556666666777666543 4444455666777777
Q ss_pred EEeCcCCcCcccCCccccCC
Q 036117 567 NFRISGNRIKGGIPAELGNL 586 (641)
Q Consensus 567 ~L~L~~n~l~~~~p~~l~~l 586 (641)
.+.+..+ ++..-..+|.++
T Consensus 337 ~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 337 TISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCCCCTT-CCEECTTTTTTS
T ss_pred EEEECCc-cCEEchhHhhCC
Confidence 7766543 333334445544
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=1.4e-09 Score=109.29 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=28.7
Q ss_pred ccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCcccc--CCCCCceEecc
Q 036117 431 STIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGIC--RGGNLIYLTAN 499 (641)
Q Consensus 431 ~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~--~~~~L~~L~l~ 499 (641)
..+..+|+|+.|.+++|.-. .++. +. . ++|++|++..|.++......+. .+++|+.|+++
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~------~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-R------PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-C------TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-C------CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 44455666777766665211 1111 11 1 2566666666555433222222 45566666553
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=1.9e-09 Score=108.29 Aligned_cols=150 Identities=15% Similarity=0.225 Sum_probs=100.2
Q ss_pred CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccc--cCCCCcEEECCC--CcCccc-----cCccc--C
Q 036117 468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLW--NCTGLTRVRLEQ--NRLDGD-----ITNAL--G 536 (641)
Q Consensus 468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~--~~~~L~~L~l~~--n~l~~~-----~~~~~--~ 536 (641)
+|+.|++++|.-. .++. + ..++|+.|++..|.+.......+. .+++|+.|+|+. +...+. +...+ .
T Consensus 173 ~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~ 249 (362)
T 2ra8_A 173 LLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249 (362)
T ss_dssp TCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred CCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence 8999999887311 3333 3 378999999988887544333343 689999998853 221111 11122 3
Q ss_pred CCCCCcEEeCCCCcccccCChhhh---cCCCCCEEeCcCCcCccc----CCccccCCCCCCEEeCCCCcCcccCCccccC
Q 036117 537 IYPDLQYIDLGDNQLSGVLTSNWG---KCTNLSNFRISGNRIKGG----IPAELGNLTYLQNLDIFDNQLTGKIPAQLFR 609 (641)
Q Consensus 537 ~l~~L~~L~Ls~n~~~~~~~~~~~---~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~ 609 (641)
.+|+|+.|++++|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.++...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 578999999999988765444443 478899999999988763 3444566789999999999887543333332
Q ss_pred -CCCCCEEeCcCCC
Q 036117 610 -SSFLIRLNLRRNQ 622 (641)
Q Consensus 610 -~~~L~~l~l~~n~ 622 (641)
+ ...++++.++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3557888776
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=2.3e-08 Score=90.51 Aligned_cols=115 Identities=18% Similarity=0.174 Sum_probs=77.6
Q ss_pred ccccCCCCcEEECCCC-cCccc----cCcccCCCCCCcEEeCCCCccccc----CChhhhcCCCCCEEeCcCCcCccc--
Q 036117 510 SLWNCTGLTRVRLEQN-RLDGD----ITNALGIYPDLQYIDLGDNQLSGV----LTSNWGKCTNLSNFRISGNRIKGG-- 578 (641)
Q Consensus 510 ~l~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~-- 578 (641)
.+...++|++|++++| .+... +...+...+.|++|+|++|++... +...+...++|++|+|++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4555677777777777 66532 334555667788888888877653 234455567788888888887643
Q ss_pred --CCccccCCCCCCEEeC--CCCcCccc----CCccccCCCCCCEEeCcCCCCc
Q 036117 579 --IPAELGNLTYLQNLDI--FDNQLTGK----IPAQLFRSSFLIRLNLRRNQLS 624 (641)
Q Consensus 579 --~p~~l~~l~~L~~L~L--~~n~l~~~----ip~~l~~~~~L~~l~l~~n~l~ 624 (641)
+...+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455666778888888 77888654 3344455678888888888774
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.50 E-value=1.8e-08 Score=95.77 Aligned_cols=66 Identities=29% Similarity=0.382 Sum_probs=33.4
Q ss_pred CCCCCcEEeCCCCcccc--cCChhhhcCCCCCEEeCcCCcCcccCCccccCCC--CCCEEeCCCCcCcccCC
Q 036117 537 IYPDLQYIDLGDNQLSG--VLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLT--YLQNLDIFDNQLTGKIP 604 (641)
Q Consensus 537 ~l~~L~~L~Ls~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~~~ip 604 (641)
.++.|+.|+|++|++++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|++.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 35555666666665554 2334445555555555555555533 2222222 55555555555554444
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=4.7e-08 Score=88.43 Aligned_cols=115 Identities=19% Similarity=0.182 Sum_probs=74.5
Q ss_pred cccCCCCCceEeccCC-cccCC----CccccccCCCCcEEECCCCcCccc----cCcccCCCCCCcEEeCCCCccccc--
Q 036117 486 GICRGGNLIYLTANVN-KLVGP----IPESLWNCTGLTRVRLEQNRLDGD----ITNALGIYPDLQYIDLGDNQLSGV-- 554 (641)
Q Consensus 486 ~~~~~~~L~~L~l~~n-~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~-- 554 (641)
.+...+.|++|++++| .+... +...+...++|++|+|++|.+... +...+...+.|++|+|++|.+++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444566666666666 55431 233455567777888887777542 234445567788888888887754
Q ss_pred --CChhhhcCCCCCEEeC--cCCcCccc----CCccccCCCCCCEEeCCCCcCc
Q 036117 555 --LTSNWGKCTNLSNFRI--SGNRIKGG----IPAELGNLTYLQNLDIFDNQLT 600 (641)
Q Consensus 555 --~~~~~~~l~~L~~L~L--~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~ 600 (641)
+...+...++|++|+| ++|.+... +...+...++|++|+|++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445666678888888 77877643 3344555678888888888775
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=1e-07 Score=90.55 Aligned_cols=80 Identities=23% Similarity=0.278 Sum_probs=43.6
Q ss_pred hcCCCCCEEeCcCCcCcc--cCCccccCCCCCCEEeCCCCcCcccCCccccCCC--CCCEEeCcCCCCcccCcc------
Q 036117 560 GKCTNLSNFRISGNRIKG--GIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSS--FLIRLNLRRNQLSDKIPA------ 629 (641)
Q Consensus 560 ~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~--~L~~l~l~~n~l~~~~p~------ 629 (641)
.+++.|+.|+|++|++++ .+|..++.+++|+.|+|++|.+.+. ..+..+. .|++|++++|++++.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 345566666666666654 3344455566666666666666532 2223332 566666666666655542
Q ss_pred -cccCCCCCcCCC
Q 036117 630 -EIGKLSRLQYLD 641 (641)
Q Consensus 630 -~~~~l~~L~~l~ 641 (641)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 244555555554
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=5.6e-07 Score=79.07 Aligned_cols=84 Identities=8% Similarity=-0.005 Sum_probs=48.5
Q ss_pred CCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCc-ccccCChhhhcC----CCCCEEeCcCCc-CcccCCccccCCCC
Q 036117 515 TGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ-LSGVLTSNWGKC----TNLSNFRISGNR-IKGGIPAELGNLTY 588 (641)
Q Consensus 515 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~ 588 (641)
..|+.|++++|.++..-...+..+++|++|+|++|. +++.....+..+ ++|++|+|++|. +++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 456666666666655544555666666666666664 555444444442 356666666664 54433344555666
Q ss_pred CCEEeCCCCc
Q 036117 589 LQNLDIFDNQ 598 (641)
Q Consensus 589 L~~L~L~~n~ 598 (641)
|+.|+|++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666664
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=8.3e-07 Score=77.98 Aligned_cols=83 Identities=8% Similarity=0.035 Sum_probs=40.2
Q ss_pred CCceEeccCCcccCCCccccccCCCCcEEECCCCc-CccccCcccCCC----CCCcEEeCCCCc-ccccCChhhhcCCCC
Q 036117 492 NLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNR-LDGDITNALGIY----PDLQYIDLGDNQ-LSGVLTSNWGKCTNL 565 (641)
Q Consensus 492 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-~~~~~~~~~~~l~~L 565 (641)
.|+.||+++|.++..--..+.+|++|+.|+|++|. ++..-...++.+ ++|++|+|++|. +++.....+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555444333344555555555555553 333222233332 245555555553 554444444555555
Q ss_pred CEEeCcCCc
Q 036117 566 SNFRISGNR 574 (641)
Q Consensus 566 ~~L~L~~n~ 574 (641)
++|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.40 E-value=0.00012 Score=65.53 Aligned_cols=112 Identities=12% Similarity=0.126 Sum_probs=69.1
Q ss_pred ccCCCCcEEECCCC-cCcc----ccCcccCCCCCCcEEeCCCCccccc----CChhhhcCCCCCEEeCcCCcCccc----
Q 036117 512 WNCTGLTRVRLEQN-RLDG----DITNALGIYPDLQYIDLGDNQLSGV----LTSNWGKCTNLSNFRISGNRIKGG---- 578 (641)
Q Consensus 512 ~~~~~L~~L~l~~n-~l~~----~~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~---- 578 (641)
.+-+.|++|+|++| ++.. .+...+.....|+.|+|++|++.+. +.+.+..-++|++|+|++|.+.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44466777777764 5543 2344556667777888888777643 233445567788888888877543
Q ss_pred CCccccCCCCCCEEeCCCC---cCccc----CCccccCCCCCCEEeCcCCCC
Q 036117 579 IPAELGNLTYLQNLDIFDN---QLTGK----IPAQLFRSSFLIRLNLRRNQL 623 (641)
Q Consensus 579 ~p~~l~~l~~L~~L~L~~n---~l~~~----ip~~l~~~~~L~~l~l~~n~l 623 (641)
+-+.+..-+.|++|+|++| .+... +...+..-++|..|+++.|..
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2234555567888888765 33322 333444557788888876654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.11 E-value=0.00019 Score=64.20 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=34.5
Q ss_pred CCCCCCCEEECCCC-CCCcc----CchhccCCCCCCEEECCCCcCCCC----CccccCCCCCCCEEEcccccCC
Q 036117 85 SAFPNLTALNLNMN-NLVGS----IPAGIGNATKLILLDLSSNNLTNP----IPPEIGYLSDLRVLLLYNNSLT 149 (641)
Q Consensus 85 ~~l~~L~~L~L~~n-~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~ 149 (641)
..-+.|++|+|+++ .+.+. +..++..-+.|++|+|++|.+.+. +...+..-+.|++|+|++|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34456666666664 55432 334455556666666666666533 2222333455555666555554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.31 E-value=0.0089 Score=49.73 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=29.1
Q ss_pred EEECCCCcCc-cccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCc
Q 036117 519 RVRLEQNRLD-GDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIK 576 (641)
Q Consensus 519 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 576 (641)
.++.+++.++ ..+|.. -.++|+.|+|++|+++...+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4455555443 223322 1234566666666666555555555666666666666553
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.03 E-value=0.011 Score=49.08 Aligned_cols=57 Identities=19% Similarity=0.315 Sum_probs=46.4
Q ss_pred cEEeCCCCccc-ccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCc
Q 036117 542 QYIDLGDNQLS-GVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT 600 (641)
Q Consensus 542 ~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 600 (641)
..++.++++++ ..+|..+ .++|++|+|++|+++...+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888999886 3556443 347999999999999776777899999999999999886
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=49.68 E-value=25 Score=26.99 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=5.4
Q ss_pred cccCCCCCCCEEEc
Q 036117 178 VKFKGMASLTDLWL 191 (641)
Q Consensus 178 ~~l~~l~~L~~L~l 191 (641)
.+|.+|.+|+.+.+
T Consensus 37 ~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 37 GMFSGCTALEKLIL 50 (100)
T ss_dssp TSSTTCTTCCCEEE
T ss_pred HHHhccCCccEEEE
Confidence 33333333333333
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.83 E-value=27 Score=26.75 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=18.8
Q ss_pred hhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccC
Q 036117 406 PQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSS 446 (641)
Q Consensus 406 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~ 446 (641)
..+|.+|.+|+.+.+..+ ++......|.+|.+|+.+.+.+
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344555555555555443 2212334455555555555543
Done!