BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036119
(839 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 95/231 (41%), Gaps = 37/231 (16%)
Query: 502 LVSFP-QAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFP-EVAL 559
L FP QA S L+ I+ L LP+ Q + LE L + + N L + P +A
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAA-GLXELPDTXQQFA--GLETLTL-ARNPLRALPASIAS 148
Query: 560 PSQLRTIIIGGCHALESLPEAWMHNELPA------TLEHLEVSYCSNLALLSRNGNLPQS 613
++LR + I C L LPE + L+ L + + +L + NL Q+
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL-QN 207
Query: 614 LKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLE 673
LK LKI + L +L +H+L L+++ + GC L
Sbjct: 208 LKSLKIRNSP------------------------LSALGPAIHHLPKLEELDLRGCTALR 243
Query: 674 SFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFP 724
++P L L + DC NL LP +H LT L L + C ++ P
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 62/176 (35%), Gaps = 29/176 (16%)
Query: 648 LKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLT 707
L P L HLQ I L P+ L LT+ L+ALP + +L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAA-GLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLN 150
Query: 708 SLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCP 767
L L I CP + PE T+ + + LEW T +R
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW-----TGIRS-------- 197
Query: 768 DLVSPPPFPASLTNLW------ISDMPDLESISSIGENLTSLKTLRLSDCPKLKYF 817
PAS+ NL I + P L ++ +L L+ L L C L+ +
Sbjct: 198 -------LPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNY 245
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 88/224 (39%), Gaps = 49/224 (21%)
Query: 16 DDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAER-MGADPVYQLKE-LSDDDCLD 73
DDVW+ S A + +I++TTR+ V + MG V ++ L + L+
Sbjct: 249 DDVWD---------SWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLE 299
Query: 74 F------TRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLK----TDIW 123
+ L E I+ +C G PL +G LL RD P WE+ LK
Sbjct: 300 ILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQNKQFK 357
Query: 124 NLRDSDILPALRLKQCFAYS---------------SLFPKDYEFQDEEIILLWTAEGFLD 168
+R S L + + S S+ KD + + + +LW E
Sbjct: 358 RIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME---- 413
Query: 169 QEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDL 212
++ED+ +EFV + LF + + R+ +HDL D
Sbjct: 414 ----TEEVEDILQEFVNK---SLLFCDRNGKSFRYYLHDLQVDF 450
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 88/224 (39%), Gaps = 49/224 (21%)
Query: 16 DDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAER-MGADPVYQLKE-LSDDDCLD 73
DDVW+ S A + +I++TTR+ V + MG V ++ L + L+
Sbjct: 243 DDVWD---------SWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLE 293
Query: 74 F------TRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLK----TDIW 123
+ L E I+ +C G PL +G LL RD P WE+ LK
Sbjct: 294 ILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQNKQFK 351
Query: 124 NLRDSDILPALRLKQCFAYS---------------SLFPKDYEFQDEEIILLWTAEGFLD 168
+R S L + + S S+ KD + + + +LW E
Sbjct: 352 RIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME---- 407
Query: 169 QEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDL 212
++ED+ +EFV + LF + + R+ +HDL D
Sbjct: 408 ----TEEVEDILQEFV---NKSLLFCDRNGKSFRYYLHDLQVDF 444
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 19/159 (11%)
Query: 502 LVSFPQA------ALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFP 555
L S+P A +PS +++V ++L + + + ++L A +L
Sbjct: 187 LESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGXKAL---D 243
Query: 556 EVALPSQLRTI---IIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQ 612
E+A+P + +I ++ C AL++L +P +L S CSNL + + + +
Sbjct: 244 EIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVP----YLLCSGCSNLTKVVXDNSAIE 299
Query: 613 SLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSL 651
+L+ DC KL S+ T+L+ I + +N K+L
Sbjct: 300 TLEPRVFXDCVKLSSVTLP---TALKTIQVYAFKNCKAL 335
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 152/365 (41%), Gaps = 86/365 (23%)
Query: 524 ALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMH 583
L SLPE LE L + SCNSL PE LP L+++++ + L++L
Sbjct: 82 GLSSLPELPPH-----LESL-VASCNSLTELPE--LPQSLKSLLVDNNN-LKAL------ 126
Query: 584 NELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDC-----SKLESLAERLD----- 633
++LP LE+L VS L + L Q+ +LKI D KL L L+
Sbjct: 127 SDLPPLLEYLGVSNNQ----LEKLPEL-QNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 181
Query: 634 NTSLEEISISVLENLKSLPADLHNLHHLQKI---------WIFGCPNLESFPE-EGLPST 683
N LEE + L+NL L A + + L+K+ + G LE PE + LP
Sbjct: 182 NNQLEE--LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 239
Query: 684 KLTELTIYDCEN-LKALPNCMHNLTSLLNLK------ISECPSVVSF---PEDGF----- 728
TIY N LK LP+ +L + LN++ + E P ++F E+ F
Sbjct: 240 T----TIYADNNLLKTLPDLPPSLEA-LNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE 294
Query: 729 -PTNLQSLDVH--------DLKISKPLLEWGSNRFTSL-----RRFTIWGGCPDLVSPPP 774
P NL L+ DL S L +N+ L R + L P
Sbjct: 295 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPE 354
Query: 775 FPASLTNLWISDMPDLESISSIGENLTSLK-TLRLSDCPKLKYFSEQGLPKSLLQLHIYA 833
P +L L + P L I E++ L+ L++ P+ LP++L QLH+
Sbjct: 355 LPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPE--------LPQNLKQLHVET 405
Query: 834 CPLIE 838
PL E
Sbjct: 406 NPLRE 410
>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine
Kinase
pdb|3FZP|A Chain A, Crystal Structure Of Pyk2 Complexed With Atpgs
pdb|3FZR|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-431396
pdb|3FZS|A Chain A, Crystal Structure Of Pyk2 Complexed With Birb796
pdb|3FZT|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-4618433
pdb|3H3C|A Chain A, Crystal Structure Of Pyk2 In Complex With Sulfoximine-
Substituted Trifluoromethylpyrimidine Analog
pdb|3ET7|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-2318841
Length = 277
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 672 LESFPEEGLPSTKLTELTIYDCENLKALP-----NCMHNLTSLLNLKISECPSVVSFPED 726
L + E S K+ L +Y + KA+ NC+H ++ N+ ++ P V +
Sbjct: 95 LGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVAS-PECVKLGDF 153
Query: 727 GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFT 761
G ++ D + +++ ++W S + RRFT
Sbjct: 154 GLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFT 188
>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine
Kinase 2 Beta (ptk2b)
Length = 281
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 672 LESFPEEGLPSTKLTELTIYDCENLKALP-----NCMHNLTSLLNLKISECPSVVSFPED 726
L + E S K+ L +Y + KA+ NC+H ++ N+ ++ P V +
Sbjct: 99 LGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVAS-PECVKLGDF 157
Query: 727 GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFT 761
G ++ D + +++ ++W S + RRFT
Sbjct: 158 GLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFT 192
>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a
pdb|4H1M|A Chain A, Crystal Structure Of Pyk2 With The Indole 10c
Length = 293
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 672 LESFPEEGLPSTKLTELTIYDCENLKALP-----NCMHNLTSLLNLKISECPSVVSFPED 726
L + E S K+ L +Y + KA+ NC+H ++ N+ ++ P V +
Sbjct: 111 LGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVAS-PECVKLGDF 169
Query: 727 GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFT 761
G ++ D + +++ ++W S + RRFT
Sbjct: 170 GLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFT 204
>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
At 1.19 A Resolution
Length = 394
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 76/197 (38%), Gaps = 46/197 (23%)
Query: 510 LPSQLRSVVIEE---CDALE-SLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRT 565
LP L+S+ +E CD E ++PE + A +C SL V+LP T
Sbjct: 124 LPLXLKSIGVEAFKGCDFKEITIPEGVTVIGDE-----AFATCESL---EYVSLPDSXET 175
Query: 566 I---IIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDC 622
+ + GC L+S+ +LP L+ + YC +L N P SL YL
Sbjct: 176 LHNGLFSGCGKLKSI-------KLPRNLKIIR-DYCFAECILLENXEFPNSLYYLGDFAL 227
Query: 623 SKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPS 682
SK T ++ I I + L K +GC +LES +
Sbjct: 228 SK----------TGVKNIIIP------------DSFTELGKSVFYGCTDLESISIQN-NK 264
Query: 683 TKLTELTIYDCENLKAL 699
++ Y+C LK +
Sbjct: 265 LRIGGSLFYNCSGLKKV 281
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 31/136 (22%)
Query: 549 NSLVSFPEVALPSQLRTIIIGGC-HALESLPEAWMHNELPATLEHLEVSYC--------- 598
N+L+S PE LP+ L + C + L +LPE LPA+L+HL+V
Sbjct: 90 NALISLPE--LPASLE--YLDACDNRLSTLPE------LPASLKHLDVDNNQLTXLPELP 139
Query: 599 SNLALLSRNGN-------LPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSL 651
+ L ++ + N LP SL+ L + + ++L L E ++ ++S ++LE+L ++
Sbjct: 140 ALLEYINADNNQLTXLPELPTSLEVLSVRN-NQLTFLPELPESLEALDVSTNLLESLPAV 198
Query: 652 PADLHNLHHLQKIWIF 667
P HH ++ IF
Sbjct: 199 PV---RNHHSEETEIF 211
>pdb|3F1Y|A Chain A, Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter
Xylanophilus
pdb|3F1Y|C Chain C, Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter
Xylanophilus
pdb|3KIA|A Chain A, Crystal Structure Of Mannosyl-3-Phosphoglycerate Synthase
From Rubrobacter Xylanophilus
pdb|3KIA|C Chain C, Crystal Structure Of Mannosyl-3-Phosphoglycerate Synthase
From Rubrobacter Xylanophilus
pdb|3O3P|A Chain A, Crystal Structure Of R. Xylanophilus Mpgs In Complex With
Gdp-Mannose
pdb|3O3P|B Chain B, Crystal Structure Of R. Xylanophilus Mpgs In Complex With
Gdp-Mannose
Length = 387
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 174 RKMEDLGREFVRELHSRSL--------FQQSSYDASRFVMHDL 208
+ M D+G EF+ H R L F+Q SYD +F DL
Sbjct: 43 KAMADIGSEFMSTYHERPLGPASAAEWFRQRSYDYGQFPPEDL 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,390,903
Number of Sequences: 62578
Number of extensions: 985026
Number of successful extensions: 2038
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2008
Number of HSP's gapped (non-prelim): 52
length of query: 839
length of database: 14,973,337
effective HSP length: 107
effective length of query: 732
effective length of database: 8,277,491
effective search space: 6059123412
effective search space used: 6059123412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)