Query 036119
Match_columns 839
No_of_seqs 450 out of 3650
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 09:36:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.4E-58 3E-63 525.5 25.0 481 2-529 254-787 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.4E-55 5.2E-60 529.6 40.7 596 2-818 289-910 (1153)
3 PLN00113 leucine-rich repeat r 100.0 4E-39 8.8E-44 390.9 27.9 504 259-835 89-605 (968)
4 PLN00113 leucine-rich repeat r 100.0 1.7E-38 3.7E-43 385.5 29.4 484 287-836 86-583 (968)
5 PLN03210 Resistant to P. syrin 99.9 2.4E-24 5.2E-29 261.0 27.2 433 153-699 467-909 (1153)
6 KOG0618 Serine/threonine phosp 99.9 3.5E-25 7.5E-30 238.2 -2.2 436 288-836 39-488 (1081)
7 KOG0472 Leucine-rich repeat pr 99.9 3E-27 6.5E-32 230.2 -18.1 451 289-813 63-540 (565)
8 KOG4194 Membrane glycoprotein 99.9 3.4E-24 7.4E-29 218.6 3.1 266 466-739 174-448 (873)
9 PF00931 NB-ARC: NB-ARC domain 99.9 1.2E-24 2.7E-29 225.5 -0.1 166 2-169 94-284 (287)
10 KOG0618 Serine/threonine phosp 99.9 1.7E-24 3.7E-29 233.0 -2.2 396 258-745 63-467 (1081)
11 KOG4194 Membrane glycoprotein 99.9 4.1E-23 8.9E-28 210.8 4.9 340 463-811 76-426 (873)
12 KOG0444 Cytoskeletal regulator 99.9 2.8E-24 6E-29 220.6 -5.5 357 275-724 13-379 (1255)
13 KOG0444 Cytoskeletal regulator 99.8 1.4E-23 3E-28 215.4 -5.2 358 291-743 4-375 (1255)
14 KOG0472 Leucine-rich repeat pr 99.8 1.7E-24 3.8E-29 211.1 -12.6 406 284-765 104-538 (565)
15 PRK15387 E3 ubiquitin-protein 99.6 6.1E-15 1.3E-19 165.6 16.5 73 294-380 201-273 (788)
16 PRK15387 E3 ubiquitin-protein 99.6 1.4E-14 3E-19 162.8 16.2 91 466-571 202-292 (788)
17 PRK15370 E3 ubiquitin-protein 99.4 1.3E-12 2.8E-17 148.2 13.3 244 538-812 178-426 (754)
18 KOG4237 Extracellular matrix p 99.4 1.6E-14 3.5E-19 141.9 -4.2 101 296-403 69-177 (498)
19 KOG4237 Extracellular matrix p 99.4 4.1E-14 8.8E-19 139.2 -2.0 360 463-833 65-497 (498)
20 PRK15370 E3 ubiquitin-protein 99.4 4.7E-12 1E-16 143.7 13.5 227 463-743 197-428 (754)
21 KOG0617 Ras suppressor protein 99.2 7.7E-13 1.7E-17 114.8 -3.3 164 627-819 25-190 (264)
22 KOG0617 Ras suppressor protein 99.2 2.3E-13 4.9E-18 118.1 -6.9 110 286-402 48-162 (264)
23 cd00116 LRR_RI Leucine-rich re 99.1 4.6E-12 9.9E-17 134.0 -2.1 58 777-835 250-318 (319)
24 cd00116 LRR_RI Leucine-rich re 99.0 2.1E-11 4.5E-16 129.0 -2.4 109 635-743 165-291 (319)
25 KOG4658 Apoptotic ATPase [Sign 98.7 5.8E-09 1.3E-13 120.8 4.5 40 589-629 748-787 (889)
26 KOG3207 Beta-tubulin folding c 98.7 5.2E-09 1.1E-13 105.3 0.7 105 635-740 121-232 (505)
27 KOG4341 F-box protein containi 98.6 1.1E-09 2.5E-14 109.3 -4.7 160 466-626 139-308 (483)
28 KOG3207 Beta-tubulin folding c 98.6 1.2E-08 2.7E-13 102.7 1.4 35 776-811 300-336 (505)
29 PRK15386 type III secretion pr 98.6 2.6E-07 5.6E-12 95.6 10.5 58 775-836 154-212 (426)
30 KOG4341 F-box protein containi 98.6 1.1E-09 2.4E-14 109.5 -6.6 143 429-576 159-309 (483)
31 KOG1259 Nischarin, modulator o 98.4 2.5E-08 5.4E-13 95.2 -1.2 129 656-813 281-411 (490)
32 PLN03150 hypothetical protein; 98.4 3.4E-07 7.5E-12 104.2 6.5 108 636-743 419-528 (623)
33 PRK15386 type III secretion pr 98.4 1.2E-06 2.5E-11 90.9 9.7 133 537-693 51-187 (426)
34 PF14580 LRR_9: Leucine-rich r 98.3 2.5E-07 5.5E-12 85.2 3.0 101 292-403 17-126 (175)
35 PF13855 LRR_8: Leucine rich r 98.3 8.4E-07 1.8E-11 66.7 5.2 58 294-357 1-59 (61)
36 KOG2120 SCF ubiquitin ligase, 98.3 5.6E-09 1.2E-13 99.6 -8.4 181 635-835 185-374 (419)
37 KOG0532 Leucine-rich repeat (L 98.3 2.5E-08 5.5E-13 103.7 -4.7 148 635-812 98-245 (722)
38 PF14580 LRR_9: Leucine-rich r 98.3 1.4E-07 3.1E-12 86.9 -0.2 82 635-720 42-126 (175)
39 KOG0532 Leucine-rich repeat (L 98.3 2.6E-08 5.7E-13 103.6 -5.5 152 286-501 90-246 (722)
40 KOG1259 Nischarin, modulator o 98.3 1.7E-07 3.8E-12 89.6 0.4 84 465-551 329-412 (490)
41 COG4886 Leucine-rich repeat (L 98.3 9.2E-07 2E-11 96.2 5.7 191 616-814 97-290 (394)
42 COG4886 Leucine-rich repeat (L 98.3 1E-06 2.2E-11 95.9 5.7 103 290-401 112-220 (394)
43 PF13855 LRR_8: Leucine rich r 98.2 2E-06 4.4E-11 64.7 4.3 59 660-718 2-60 (61)
44 PLN03150 hypothetical protein; 98.2 2E-06 4.4E-11 98.0 5.6 90 660-749 419-509 (623)
45 KOG2120 SCF ubiquitin ligase, 98.0 1.3E-07 2.8E-12 90.5 -6.9 61 295-361 186-248 (419)
46 PF12799 LRR_4: Leucine Rich r 97.8 2E-05 4.4E-10 53.9 3.6 38 294-332 1-38 (44)
47 KOG0531 Protein phosphatase 1, 97.6 1.4E-05 3.1E-10 86.9 0.4 110 288-407 89-203 (414)
48 KOG1909 Ran GTPase-activating 97.6 4.7E-06 1E-10 82.2 -3.2 180 613-811 93-308 (382)
49 KOG1909 Ran GTPase-activating 97.5 1.6E-05 3.6E-10 78.5 -0.4 117 283-402 81-225 (382)
50 KOG2982 Uncharacterized conser 97.4 3.2E-05 7E-10 74.5 0.1 39 291-330 68-109 (418)
51 KOG0531 Protein phosphatase 1, 97.4 3.2E-05 6.9E-10 84.3 -0.2 32 779-811 234-265 (414)
52 KOG1859 Leucine-rich repeat pr 97.4 9.9E-06 2.1E-10 87.3 -4.6 103 728-836 185-291 (1096)
53 PRK04841 transcriptional regul 97.2 0.0014 3.1E-08 80.0 10.9 193 8-217 120-332 (903)
54 KOG2982 Uncharacterized conser 97.2 0.00068 1.5E-08 65.7 5.6 83 635-717 71-156 (418)
55 KOG1644 U2-associated snRNP A' 97.1 0.0008 1.7E-08 61.6 4.8 104 636-742 43-152 (233)
56 PF12799 LRR_4: Leucine Rich r 97.0 0.00072 1.6E-08 46.3 2.8 40 778-819 2-41 (44)
57 KOG1859 Leucine-rich repeat pr 96.9 5.3E-05 1.2E-09 81.9 -5.1 114 625-743 176-292 (1096)
58 KOG3665 ZYG-1-like serine/thre 96.8 0.00056 1.2E-08 78.0 2.4 109 260-380 145-261 (699)
59 KOG1947 Leucine rich repeat pr 96.8 8.3E-05 1.8E-09 83.7 -5.1 39 779-817 403-443 (482)
60 KOG1644 U2-associated snRNP A' 96.6 0.0029 6.3E-08 58.0 4.9 99 294-401 42-151 (233)
61 KOG3665 ZYG-1-like serine/thre 96.5 0.0011 2.4E-08 75.6 1.7 107 635-743 122-233 (699)
62 KOG1947 Leucine rich repeat pr 96.3 0.00056 1.2E-08 77.0 -2.2 64 511-574 242-308 (482)
63 KOG4579 Leucine-rich repeat (L 96.1 0.00041 8.8E-09 59.1 -3.1 105 614-720 29-136 (177)
64 KOG2739 Leucine-rich acidic nu 96.1 0.0025 5.4E-08 61.2 1.3 85 655-740 61-153 (260)
65 PF00560 LRR_1: Leucine Rich R 95.8 0.0059 1.3E-07 34.5 1.5 21 295-316 1-21 (22)
66 COG5238 RNA1 Ran GTPase-activa 94.9 0.004 8.8E-08 59.7 -1.5 82 730-811 157-252 (388)
67 KOG2739 Leucine-rich acidic nu 94.9 0.016 3.4E-07 55.8 2.2 87 656-744 40-130 (260)
68 COG5238 RNA1 Ran GTPase-activa 94.9 0.0021 4.7E-08 61.5 -3.6 41 776-817 271-318 (388)
69 KOG4579 Leucine-rich repeat (L 94.5 0.0021 4.6E-08 54.9 -4.1 106 636-743 28-136 (177)
70 KOG2123 Uncharacterized conser 93.8 0.0046 1E-07 59.5 -3.9 97 613-713 20-123 (388)
71 PF00560 LRR_1: Leucine Rich R 93.7 0.05 1.1E-06 30.7 1.7 20 319-339 1-20 (22)
72 TIGR03015 pepcterm_ATPase puta 93.3 0.84 1.8E-05 46.5 11.5 98 7-105 121-242 (269)
73 PF05729 NACHT: NACHT domain 93.1 0.12 2.5E-06 48.2 4.4 65 7-71 79-155 (166)
74 PF13504 LRR_7: Leucine rich r 92.6 0.083 1.8E-06 27.6 1.4 16 295-311 2-17 (17)
75 KOG3864 Uncharacterized conser 91.0 0.039 8.4E-07 51.0 -1.4 84 637-720 103-189 (221)
76 PF13173 AAA_14: AAA domain 90.7 0.32 7E-06 42.9 4.2 63 7-71 59-127 (128)
77 KOG2123 Uncharacterized conser 89.9 0.021 4.6E-07 55.1 -4.2 84 466-553 20-103 (388)
78 PRK06893 DNA replication initi 89.9 0.28 6.2E-06 48.4 3.4 63 11-73 93-168 (229)
79 COG2909 MalT ATP-dependent tra 89.1 0.63 1.4E-05 52.9 5.6 194 8-218 128-339 (894)
80 PF01637 Arch_ATPase: Archaeal 87.3 0.48 1E-05 47.0 3.1 93 8-100 117-233 (234)
81 KOG3864 Uncharacterized conser 87.0 0.087 1.9E-06 48.8 -2.1 61 683-743 101-164 (221)
82 PF13306 LRR_5: Leucine rich r 85.9 2.6 5.7E-05 36.9 6.9 57 655-715 8-66 (129)
83 smart00370 LRR Leucine-rich re 84.2 0.71 1.5E-05 27.2 1.6 19 294-313 2-20 (26)
84 smart00369 LRR_TYP Leucine-ric 84.2 0.71 1.5E-05 27.2 1.6 19 294-313 2-20 (26)
85 PF13306 LRR_5: Leucine rich r 83.5 4.7 0.0001 35.3 7.4 75 636-715 13-89 (129)
86 PRK07471 DNA polymerase III su 83.2 3.5 7.6E-05 43.7 7.3 95 8-102 140-239 (365)
87 TIGR00678 holB DNA polymerase 78.9 2.1 4.6E-05 40.7 3.6 90 7-96 94-186 (188)
88 smart00367 LRR_CC Leucine-rich 78.8 1.3 2.7E-05 26.2 1.3 17 800-816 1-17 (26)
89 PRK06645 DNA polymerase III su 72.2 6.9 0.00015 43.4 5.8 89 7-95 126-223 (507)
90 PRK09087 hypothetical protein; 70.9 21 0.00045 35.1 8.3 87 11-99 89-193 (226)
91 PRK05564 DNA polymerase III su 69.8 7.7 0.00017 40.5 5.4 94 8-101 92-190 (313)
92 TIGR03420 DnaA_homol_Hda DnaA 69.5 6.9 0.00015 38.4 4.8 62 11-72 92-165 (226)
93 PRK09112 DNA polymerase III su 66.7 11 0.00023 39.8 5.7 95 8-102 140-241 (351)
94 PRK05707 DNA polymerase III su 64.9 9.7 0.00021 39.8 4.9 93 8-101 106-203 (328)
95 PRK00080 ruvB Holliday junctio 64.6 22 0.00048 37.3 7.6 63 39-101 151-222 (328)
96 KOG0473 Leucine-rich repeat pr 63.2 0.35 7.5E-06 45.8 -5.4 39 291-330 39-77 (326)
97 COG3903 Predicted ATPase [Gene 61.7 3.8 8.3E-05 42.9 1.1 201 3-217 82-314 (414)
98 TIGR02903 spore_lon_C ATP-depe 61.1 11 0.00023 43.4 4.7 71 2-72 285-359 (615)
99 smart00364 LRR_BAC Leucine-ric 59.2 6.1 0.00013 23.3 1.2 17 295-312 3-19 (26)
100 PF13516 LRR_6: Leucine Rich r 59.1 6.3 0.00014 22.5 1.3 13 318-330 2-14 (24)
101 PRK07940 DNA polymerase III su 58.9 17 0.00037 39.0 5.5 95 8-102 116-214 (394)
102 PRK13342 recombination factor 57.7 13 0.00028 40.6 4.4 90 7-99 90-194 (413)
103 PRK14963 DNA polymerase III su 56.4 20 0.00043 40.0 5.7 88 8-95 115-211 (504)
104 KOG0473 Leucine-rich repeat pr 56.0 0.62 1.3E-05 44.2 -5.0 61 290-357 61-121 (326)
105 PRK00411 cdc6 cell division co 55.7 30 0.00065 37.5 7.0 112 8-120 137-281 (394)
106 COG1373 Predicted ATPase (AAA+ 54.7 18 0.0004 39.0 4.9 90 9-101 94-192 (398)
107 PRK14961 DNA polymerase III su 52.5 38 0.00082 36.2 6.9 88 8-95 118-214 (363)
108 PRK06964 DNA polymerase III su 50.1 23 0.0005 37.1 4.7 94 8-102 131-226 (342)
109 KOG4308 LRR-containing protein 49.2 0.2 4.3E-06 54.9 -11.1 181 614-812 89-301 (478)
110 smart00365 LRR_SD22 Leucine-ri 48.4 13 0.00029 22.0 1.5 13 318-330 2-14 (26)
111 PRK06090 DNA polymerase III su 46.6 29 0.00063 36.0 4.7 94 8-102 107-202 (319)
112 TIGR00635 ruvB Holliday juncti 46.5 27 0.00059 36.2 4.6 64 39-102 130-202 (305)
113 PRK08769 DNA polymerase III su 46.1 34 0.00073 35.5 5.1 95 8-102 112-209 (319)
114 smart00368 LRR_RI Leucine rich 45.2 14 0.00031 22.2 1.3 13 318-330 2-14 (28)
115 TIGR02397 dnaX_nterm DNA polym 44.3 72 0.0016 33.9 7.6 89 8-96 116-213 (355)
116 KOG3763 mRNA export factor TAP 43.0 9.5 0.00021 41.5 0.6 61 635-697 218-284 (585)
117 PRK14962 DNA polymerase III su 41.8 94 0.002 34.4 8.0 112 8-119 116-240 (472)
118 PRK14959 DNA polymerase III su 41.4 58 0.0013 37.1 6.3 97 7-103 117-223 (624)
119 PRK08727 hypothetical protein; 41.3 33 0.00071 33.9 4.1 62 10-71 94-167 (233)
120 PRK12402 replication factor C 40.8 55 0.0012 34.5 6.0 64 8-71 124-189 (337)
121 PRK07003 DNA polymerase III su 39.7 42 0.00091 39.0 4.9 65 8-72 118-184 (830)
122 PF05725 FNIP: FNIP Repeat; I 39.6 42 0.0009 22.8 3.1 11 775-785 32-42 (44)
123 PRK14957 DNA polymerase III su 38.8 71 0.0015 36.0 6.5 65 7-71 117-183 (546)
124 PRK12323 DNA polymerase III su 38.8 55 0.0012 37.4 5.5 90 7-96 122-220 (700)
125 PRK14955 DNA polymerase III su 38.5 30 0.00066 37.4 3.6 93 8-100 126-228 (397)
126 KOG0741 AAA+-type ATPase [Post 38.4 57 0.0012 35.7 5.3 86 4-91 593-704 (744)
127 PF02562 PhoH: PhoH-like prote 37.9 41 0.00089 32.3 3.9 41 10-53 120-160 (205)
128 PRK06871 DNA polymerase III su 37.6 60 0.0013 33.8 5.4 92 8-99 106-201 (325)
129 cd00009 AAA The AAA+ (ATPases 37.1 36 0.00079 30.0 3.4 44 7-50 82-131 (151)
130 cd00561 CobA_CobO_BtuR ATP:cor 36.6 41 0.00088 30.8 3.5 42 8-49 94-138 (159)
131 PRK08058 DNA polymerase III su 35.8 49 0.0011 34.7 4.5 65 8-72 109-175 (329)
132 PLN03025 replication factor C 35.4 45 0.00097 34.8 4.2 65 8-72 98-164 (319)
133 PRK08903 DnaA regulatory inact 34.6 77 0.0017 31.1 5.5 60 11-70 92-161 (227)
134 PRK07399 DNA polymerase III su 33.8 90 0.002 32.4 6.0 93 7-100 122-220 (314)
135 PRK07993 DNA polymerase III su 32.9 66 0.0014 33.7 4.9 94 8-101 107-204 (334)
136 PRK06620 hypothetical protein; 31.0 93 0.002 30.2 5.3 60 10-71 86-152 (214)
137 PRK07132 DNA polymerase III su 30.7 80 0.0017 32.5 4.9 94 8-101 89-185 (299)
138 PRK14956 DNA polymerase III su 30.6 69 0.0015 35.2 4.6 65 7-71 119-185 (484)
139 PF13177 DNA_pol3_delta2: DNA 30.5 44 0.00096 30.7 2.8 59 8-66 101-161 (162)
140 PRK08084 DNA replication initi 30.2 98 0.0021 30.6 5.4 60 12-71 100-172 (235)
141 PRK14971 DNA polymerase III su 29.6 90 0.002 35.9 5.6 88 8-95 120-216 (614)
142 PRK14970 DNA polymerase III su 28.8 1.1E+02 0.0023 32.8 5.8 65 8-72 107-173 (367)
143 PRK08451 DNA polymerase III su 28.7 1.3E+02 0.0027 33.9 6.3 88 8-95 116-212 (535)
144 PRK00440 rfc replication facto 27.7 1.6E+02 0.0034 30.6 6.8 87 9-95 102-197 (319)
145 PRK14951 DNA polymerase III su 27.6 1.3E+02 0.0028 34.6 6.2 64 8-71 123-188 (618)
146 PF02463 SMC_N: RecF/RecN/SMC 27.6 38 0.00083 33.0 2.0 46 10-55 159-205 (220)
147 KOG0989 Replication factor C, 26.9 58 0.0012 33.1 2.9 83 11-93 131-222 (346)
148 PRK14954 DNA polymerase III su 25.8 1.5E+02 0.0032 34.1 6.4 92 8-99 126-227 (620)
149 PRK14960 DNA polymerase III su 25.5 1.8E+02 0.004 33.4 6.8 64 8-71 117-182 (702)
150 PRK07276 DNA polymerase III su 25.4 1E+02 0.0022 31.5 4.6 59 7-65 102-162 (290)
151 PRK06305 DNA polymerase III su 25.3 1.3E+02 0.0028 33.1 5.7 94 8-101 120-223 (451)
152 PRK14949 DNA polymerase III su 23.8 1.6E+02 0.0034 35.3 6.1 95 7-101 117-221 (944)
153 PRK08691 DNA polymerase III su 22.8 1.9E+02 0.0042 33.5 6.4 64 8-71 118-183 (709)
154 PRK14964 DNA polymerase III su 22.3 2E+02 0.0044 31.9 6.4 64 8-71 115-180 (491)
155 PRK07133 DNA polymerase III su 21.8 2.3E+02 0.0049 33.2 6.8 65 8-72 117-183 (725)
156 PHA02544 44 clamp loader, smal 21.2 2.3E+02 0.005 29.4 6.5 43 8-50 99-142 (316)
157 KOG4242 Predicted myosin-I-bin 20.4 2.9E+02 0.0063 30.1 6.7 92 684-775 355-460 (553)
158 PRK10536 hypothetical protein; 20.4 1.2E+02 0.0026 30.2 3.8 45 5-52 169-216 (262)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-58 Score=525.46 Aligned_cols=481 Identities=31% Similarity=0.523 Sum_probs=356.6
Q ss_pred hhhhcCCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHHH-hCCCCeEeCCCCCcccccCcC-----
Q 036119 2 LKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAER-MGADPVYQLKELSDDDCLDFT----- 75 (839)
Q Consensus 2 l~~~l~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~-~~~~~~~~~~~l~~~~~~~~~----- 75 (839)
|.+.|++|||+|||||||+. .+|+.++.+++....||||++|||++.||.. |++...++++.|..+|||..|
T Consensus 254 i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~ 331 (889)
T KOG4658|consen 254 LLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVG 331 (889)
T ss_pred HHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhc
Confidence 67889999999999999997 6799999999999899999999999999988 888899999999999999332
Q ss_pred -----CCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHHHHHhccccccCC------CCCcchhc---------
Q 036119 76 -----RHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWNLRD------SDILPALR--------- 135 (839)
Q Consensus 76 -----~~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~~~~~~~~~~~~------~~~~~~l~--------- 135 (839)
.++.+.++|++||++|+|+|||++++|++|+.|++.++|+++.+...+.... +.+++.|+
T Consensus 332 ~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~ 411 (889)
T KOG4658|consen 332 PNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE 411 (889)
T ss_pred cccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH
Confidence 2355899999999999999999999999999999999999999865444222 14556666
Q ss_pred hhhhhhhhccCCCCcccChhHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHhcccccccc--CCCcceeecHHHHHHH
Q 036119 136 LKQCFAYSSLFPKDYEFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSS--YDASRFVMHDLINDLA 213 (839)
Q Consensus 136 ~k~~f~~~a~f~~~~~~~~~~li~~w~~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~--~~~~~~~mHdlv~~la 213 (839)
+|.||+|||+||+||.|+++++|.+|+|+||+.+...++.+++.|..|+.+||.+++++... .....|+|||+|||||
T Consensus 412 lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~a 491 (889)
T KOG4658|consen 412 LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMA 491 (889)
T ss_pred HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHH
Confidence 89999999999999999999999999999999986678999999999999999999999875 2468899999999999
Q ss_pred HHHcc-----CceEEeccc--ccccccccccccceEEEEEccccchhhcccccccccccccccccccccccchhhhHHHH
Q 036119 214 RWAAG-----EICFRMEDT--LAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFDENYLAWSVL 286 (839)
Q Consensus 214 ~~i~~-----~e~~~~~~~--~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~ 286 (839)
.|+++ +|...+... .........+..+|+++.+..... .+..-..++.|++|+..+... ....+.
T Consensus 492 l~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~---~~~~~~~~~~L~tLll~~n~~-----~l~~is 563 (889)
T KOG4658|consen 492 LWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIE---HIAGSSENPKLRTLLLQRNSD-----WLLEIS 563 (889)
T ss_pred HHHhccccccccceEEECCcCccccccccchhheeEEEEeccchh---hccCCCCCCccceEEEeecch-----hhhhcC
Confidence 99999 554443331 111222334467899998876532 334445566899996654321 235566
Q ss_pred HHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc
Q 036119 287 QMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR 366 (839)
Q Consensus 287 ~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~ 366 (839)
.++|..++.||+|||++|...+.+|++|++|.|||||+++++.+ ..+|.++.+ |.+|.+|++.++..+. .+|.
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I-~~LP~~l~~-----Lk~L~~Lnl~~~~~l~-~~~~ 636 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI-SHLPSGLGN-----LKKLIYLNLEVTGRLE-SIPG 636 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc-cccchHHHH-----HHhhheeccccccccc-cccc
Confidence 77899999999999999987899999999999999999999999 579999888 9999999999876554 4453
Q ss_pred ---CCCCccEEeecccC-----cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCC-
Q 036119 367 ---RLLLLETLDITSCD-----QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLN- 437 (839)
Q Consensus 367 ---~l~~L~~L~l~~~~-----~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~- 437 (839)
.|.+|++|.+.... .....+.++.+|+.++........+... .....|.
T Consensus 637 i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l----------------------~~~~~L~~ 694 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDL----------------------LGMTRLRS 694 (889)
T ss_pred hhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhh----------------------hhhHHHHH
Confidence 58899999876543 2234556666666666644332000000 0000010
Q ss_pred ---ceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccC------CCCCccEEeecCCCCCcccCCC
Q 036119 438 ---WLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALL------TLSSLTEMRIHDCASLVSFPQA 508 (839)
Q Consensus 438 ---~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~------~l~~L~~L~l~~~~~~~~l~~~ 508 (839)
.+.+.++.. ......++.+ .+|+.|.+.+|.+.+....+.. .++++..+.+.+|.........
T Consensus 695 ~~~~l~~~~~~~-------~~~~~~~~~l-~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~ 766 (889)
T KOG4658|consen 695 LLQSLSIEGCSK-------RTLISSLGSL-GNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL 766 (889)
T ss_pred HhHhhhhccccc-------ceeecccccc-cCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh
Confidence 000000000 0001122222 5777777777766432222211 1456666667777666666655
Q ss_pred CCCCCccEEEeccCccccccc
Q 036119 509 ALPSQLRSVVIEECDALESLP 529 (839)
Q Consensus 509 ~~~~~L~~L~l~~~~~l~~~~ 529 (839)
..+|+|+.|.+..|..++.+.
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred hccCcccEEEEecccccccCC
Confidence 667888888888877666554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.4e-55 Score=529.56 Aligned_cols=596 Identities=23% Similarity=0.348 Sum_probs=349.2
Q ss_pred hhhhcCCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHHHhCCCCeEeCCCCCcccccCcC------
Q 036119 2 LKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPVYQLKELSDDDCLDFT------ 75 (839)
Q Consensus 2 l~~~l~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~~~~~~~~~l~~~~~~~~~------ 75 (839)
++++|++||+||||||||+. .+|+.+.+...|+++|||||||||+++++..++++.+|+|+.++++|||++|
T Consensus 289 ~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 289 MEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred HHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 57889999999999999765 7899999988899999999999999999998988999999999999999433
Q ss_pred ---CCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHHHHHhccccccCCCCCcchhc----------hhhhhhh
Q 036119 76 ---RHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWNLRDSDILPALR----------LKQCFAY 142 (839)
Q Consensus 76 ---~~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~----------~k~~f~~ 142 (839)
..+++.+++.+||++|+|+|||++++|+.|+++ +.++|+.++++..+ ..+.++.+.|+ .|.||++
T Consensus 367 ~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~-~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ 444 (1153)
T PLN03210 367 KNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRN-GLDGKIEKTLRVSYDGLNNKKDKAIFRH 444 (1153)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHh-CccHHHHHHHHHhhhccCccchhhhhhe
Confidence 224688999999999999999999999999998 78999999986433 23335555555 6899999
Q ss_pred hccCCCCcccChhHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHhccccccccCCCcceeecHHHHHHHHHHccCceE
Q 036119 143 SSLFPKDYEFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLARWAAGEICF 222 (839)
Q Consensus 143 ~a~f~~~~~~~~~~li~~w~~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~mHdlv~~la~~i~~~e~~ 222 (839)
+|+|+++..+ +.+..|.+.+.+.. +..++.|++++|++.. .+.++|||++|+||+++++++..
T Consensus 445 ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~---~~~~~MHdLl~~~~r~i~~~~~~ 507 (1153)
T PLN03210 445 IACLFNGEKV---NDIKLLLANSDLDV-----------NIGLKNLVDKSLIHVR---EDIVEMHSLLQEMGKEIVRAQSN 507 (1153)
T ss_pred ehhhcCCCCH---HHHHHHHHhcCCCc-----------hhChHHHHhcCCEEEc---CCeEEhhhHHHHHHHHHHHhhcC
Confidence 9999998754 45777877765542 1228889999999875 45799999999999999987641
Q ss_pred EecccccccccccccccceEEEEEccccchhhcccccccccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeC
Q 036119 223 RMEDTLAGENRQKFSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLC 302 (839)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 302 (839)
. + .-|. ..+...+....+..-....+.+.+ .++..... ...+.+..|..|++|++|.+.
T Consensus 508 ---~----------~-~~r~--~l~~~~di~~vl~~~~g~~~v~~i-~l~~~~~~----~~~i~~~aF~~m~~L~~L~~~ 566 (1153)
T PLN03210 508 ---E----------P-GERE--FLVDAKDICDVLEDNTGTKKVLGI-TLDIDEID----ELHIHENAFKGMRNLLFLKFY 566 (1153)
T ss_pred ---C----------C-Ccce--eEeCHHHHHHHHHhCcccceeeEE-EeccCccc----eeeecHHHHhcCccccEEEEe
Confidence 0 0 1111 111111111111111111122211 01100000 011234456777777777775
Q ss_pred CCc------ccccccccccCcC-cCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCccEEe
Q 036119 303 GYR------NIFNLPNEIGNLK-HLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLETLD 375 (839)
Q Consensus 303 ~~~------~~~~lp~~i~~L~-~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~~L~ 375 (839)
.+. ....+|..+..++ +||+|++.++.+ ..+|..+ . +.+|++|++.+| .+. .+|.
T Consensus 567 ~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f-~-----~~~L~~L~L~~s-~l~-~L~~--------- 628 (1153)
T PLN03210 567 TKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNF-R-----PENLVKLQMQGS-KLE-KLWD--------- 628 (1153)
T ss_pred cccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCcC-C-----ccCCcEEECcCc-ccc-cccc---------
Confidence 442 0123444444442 355555554443 3333322 1 233444444332 111 1110
Q ss_pred ecccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCccccccccc
Q 036119 376 ITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEE 455 (839)
Q Consensus 376 l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 455 (839)
.+..+
T Consensus 629 ---------~~~~l------------------------------------------------------------------ 633 (1153)
T PLN03210 629 ---------GVHSL------------------------------------------------------------------ 633 (1153)
T ss_pred ---------ccccC------------------------------------------------------------------
Confidence 00011
Q ss_pred ccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhC
Q 036119 456 HDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQN 535 (839)
Q Consensus 456 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 535 (839)
++|+.|+++++.....+|. +..+++|+.|++++|..+..+|. .+ .
T Consensus 634 ---------~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~-----------------------si--~ 678 (1153)
T PLN03210 634 ---------TGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS-----------------------SI--Q 678 (1153)
T ss_pred ---------CCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch-----------------------hh--h
Confidence 2444444444443344443 55556666666666655554443 22 2
Q ss_pred CCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccc
Q 036119 536 SNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLK 615 (839)
Q Consensus 536 ~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~ 615 (839)
.+++|+.|++++|..++.+|....+++|+.|.+++|..++.+|.. +.+|+.|++.++. +..+|... .+++|+
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~------~~nL~~L~L~~n~-i~~lP~~~-~l~~L~ 750 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI------STNISWLDLDETA-IEEFPSNL-RLENLD 750 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc------cCCcCeeecCCCc-cccccccc-cccccc
Confidence 334444444444444444443333444445555444444333321 1234444444432 22222211 123455
Q ss_pred eeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccc
Q 036119 616 YLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCEN 695 (839)
Q Consensus 616 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 695 (839)
+|.+.++..... .. ......+......++|+.|++++|+....+|..+..+++|+.|++++|+.
T Consensus 751 ~L~l~~~~~~~l-~~---------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 751 ELILCEMKSEKL-WE---------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN 814 (1153)
T ss_pred cccccccchhhc-cc---------------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC
Confidence 555544322110 00 00000111122346777777777777777777777777777777777777
Q ss_pred cccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCC
Q 036119 696 LKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPF 775 (839)
Q Consensus 696 l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 775 (839)
++.+|..+ ++++|+.|++++|..+..+|. .+++|++|++++|.+.. +|.+ ...+
T Consensus 815 L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n~i~~-iP~s-i~~l--------------------- 868 (1153)
T PLN03210 815 LETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRTGIEE-VPWW-IEKF--------------------- 868 (1153)
T ss_pred cCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECCCCCCcc-ChHH-HhcC---------------------
Confidence 77777655 677777777777777666654 34677778877776653 2221 1222
Q ss_pred CcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccC
Q 036119 776 PASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFS 818 (839)
Q Consensus 776 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 818 (839)
++|+.|++++|+.++.+|..+..+++|+.+++++|+.|+.++
T Consensus 869 -~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 869 -SNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred -CCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 346666666666666666666666677777777776666544
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4e-39 Score=390.88 Aligned_cols=504 Identities=18% Similarity=0.167 Sum_probs=241.0
Q ss_pred cccccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCC
Q 036119 259 ICDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGA 338 (839)
Q Consensus 259 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~ 338 (839)
+..+++|++| .+..|.+...++...+..+++||+|+|++|.+.+.+|. +.+++|++|++++|.+.+.+|..+
T Consensus 89 ~~~l~~L~~L------~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~ 160 (968)
T PLN00113 89 IFRLPYIQTI------NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI 160 (968)
T ss_pred HhCCCCCCEE------ECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH
Confidence 4455555555 33333333344444555666666666666664444553 345666666666666655555555
Q ss_pred CCCccccCCCccEEeccCccccccCCCc---CCCCccEEeecccC---cccccCCCCCCccEEEeccccceeecCCCccc
Q 036119 339 GQEVDEVFPKLRTLSLDNCCKLQGTLPR---RLLLLETLDITSCD---QLLVTIQCLPALSELQIDGCKRVVFSSPHLVH 412 (839)
Q Consensus 339 ~~~~~~~l~~L~~L~L~~~~~l~~~lp~---~l~~L~~L~l~~~~---~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~ 412 (839)
+. +++|++|++++| .+.+.+|. .+.+|++|++++|. .+|..++.+++|++|++++|....
T Consensus 161 ~~-----l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-------- 226 (968)
T PLN00113 161 GS-----FSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG-------- 226 (968)
T ss_pred hc-----CCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC--------
Confidence 54 666666666664 44445553 34555666665554 345555666666666665554221
Q ss_pred eeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCcc
Q 036119 413 AVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLT 492 (839)
Q Consensus 413 ~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 492 (839)
.. ......+++|+.|++.++......+ ..+..+ ++|+.|++++|.+.+.+|.++.++++|+
T Consensus 227 -----------~~-p~~l~~l~~L~~L~L~~n~l~~~~p------~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 287 (968)
T PLN00113 227 -----------EI-PYEIGGLTSLNHLDLVYNNLTGPIP------SSLGNL-KNLQYLFLYQNKLSGPIPPSIFSLQKLI 287 (968)
T ss_pred -----------cC-ChhHhcCCCCCEEECcCceeccccC------hhHhCC-CCCCEEECcCCeeeccCchhHhhccCcC
Confidence 00 0011233444444444332111000 011111 3445555555544444444445555555
Q ss_pred EEeecCCCCCcccCC-CCCCCCccEEEeccCccccccchhhhhCCCCccceEecccCCCCcCCCC-CCCCCCccEEEEcC
Q 036119 493 EMRIHDCASLVSFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPE-VALPSQLRTIIIGG 570 (839)
Q Consensus 493 ~L~l~~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~ 570 (839)
.|++++|.....+|. ...+++|+.|++.+|.....+|..+ ..+++|+.|++++|.....+|. +..+++|+.|++++
T Consensus 288 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred EEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH--hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence 555554433333332 1234445555555444433333332 2344455555554444333331 23334444454444
Q ss_pred CCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcC-CCCcceeeeccccccc
Q 036119 571 CHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLD-NTSLEEISISVLENLK 649 (839)
Q Consensus 571 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~ 649 (839)
|.....+|.... ..++|+.|++.+|.....++..+. .++|+.|++++|.+.+
T Consensus 366 n~l~~~~p~~~~---------------------------~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 366 NNLTGEIPEGLC---------------------------SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418 (968)
T ss_pred CeeEeeCChhHh---------------------------CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence 433333333222 123444444444443333333222 2445555555555444
Q ss_pred CccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC-CC
Q 036119 650 SLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GF 728 (839)
Q Consensus 650 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~ 728 (839)
.+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|+..+.+|..+ ..++|+.|++++|++...+|.. ..
T Consensus 419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~ 497 (968)
T PLN00113 419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS 497 (968)
T ss_pred ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh
Confidence 444444455555555555554444444444444455555555554444444332 2344555555555444444432 33
Q ss_pred CCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCC---CCcccceeeecCCCCCCccccCCCCCCccCe
Q 036119 729 PTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP---FPASLTNLWISDMPDLESISSIGENLTSLKT 805 (839)
Q Consensus 729 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~ 805 (839)
+++|++|++++|.+.+.+|. .+..+++|+.|++++|... ...|. -+++|+.|++++|...+.+|..+..+++|+.
T Consensus 498 l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIPD-ELSSCKKLVSLDLSHNQLS-GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred hhccCEEECcCCcceeeCCh-HHcCccCCCEEECCCCccc-ccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence 44455555555554443332 1233444555555442111 11111 2346778888888877778877777888888
Q ss_pred eeccCCCCccccCCCCCCcccceeeecCCC
Q 036119 806 LRLSDCPKLKYFSEQGLPKSLLQLHIYACP 835 (839)
Q Consensus 806 L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~ 835 (839)
|++++|+....+|..+.+.++....+.+++
T Consensus 576 l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 576 VNISHNHLHGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred EeccCCcceeeCCCcchhcccChhhhcCCc
Confidence 888888666667665544444444444443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-38 Score=385.47 Aligned_cols=484 Identities=18% Similarity=0.177 Sum_probs=363.7
Q ss_pred HHHhcCCCceeEEEeCCCccccccccccc-CcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC
Q 036119 287 QMLLNHLPRLRVFSLCGYRNIFNLPNEIG-NLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP 365 (839)
Q Consensus 287 ~~~~~~l~~L~~L~L~~~~~~~~lp~~i~-~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp 365 (839)
+..|..+++|++|+|++|.+.+.+|..+. .+.+|++|++++|.+.+.+|.+ . +++|++|++++| .+.+.+|
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~--~-----l~~L~~L~Ls~n-~~~~~~p 157 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--S-----IPNLETLDLSNN-MLSGEIP 157 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc--c-----cCCCCEEECcCC-cccccCC
Confidence 45677888888888888885557887665 8888888888888887777752 2 788888888886 5555677
Q ss_pred c---CCCCccEEeecccC---cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCce
Q 036119 366 R---RLLLLETLDITSCD---QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWL 439 (839)
Q Consensus 366 ~---~l~~L~~L~l~~~~---~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L 439 (839)
. .+.+|++|++++|. .+|..++++++|++|++++|.... .++..+.
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-----------------------~~p~~l~----- 209 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG-----------------------QIPRELG----- 209 (968)
T ss_pred hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC-----------------------cCChHHc-----
Confidence 4 56677888887775 466777788888888887765321 0011111
Q ss_pred ecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC-CCCCCCccEEE
Q 036119 440 QISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ-AALPSQLRSVV 518 (839)
Q Consensus 440 ~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~~~L~~L~ 518 (839)
.+ ++|+.|++++|.+.+.+|..++++++|+.|++++|...+.+|. ...+++|+.|.
T Consensus 210 ----------------------~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 266 (968)
T PLN00113 210 ----------------------QM-KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266 (968)
T ss_pred ----------------------Cc-CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEE
Confidence 11 3677777777777666777777777777777777755544543 34467777777
Q ss_pred eccCccccccchhhhhCCCCccceEecccCCCCcCCCC-CCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEee
Q 036119 519 IEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPE-VALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSY 597 (839)
Q Consensus 519 l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 597 (839)
+++|.....+|..+ ..+++|+.|++++|.....+|. +..+++|+.|++++|.....+|..+... ++|+.|++.+
T Consensus 267 L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~L~~ 341 (968)
T PLN00113 267 LYQNKLSGPIPPSI--FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL---PRLQVLQLWS 341 (968)
T ss_pred CcCCeeeccCchhH--hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC---CCCCEEECcC
Confidence 77776555555444 3457777777777766555553 3556677777777776555555443321 4678888887
Q ss_pred cCCcccccCCCCcccccceeEeccCCCchhhhhhcC-CCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccC
Q 036119 598 CSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLD-NTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFP 676 (839)
Q Consensus 598 c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 676 (839)
|.....++......++|+.|++++|.....++..+. .++|+.|++++|.+.+.+|..+..+++|+.|++++|...+.+|
T Consensus 342 n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p 421 (968)
T PLN00113 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421 (968)
T ss_pred CCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC
Confidence 765545544333446899999999877666665544 4889999999999999999999999999999999999988899
Q ss_pred CCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccc
Q 036119 677 EEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTS 756 (839)
Q Consensus 677 ~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 756 (839)
..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.+...+|.....++|+.|++++|++.+..+.. +..+++
T Consensus 422 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~-~~~l~~ 500 (968)
T PLN00113 422 SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK-LGSLSE 500 (968)
T ss_pred hhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChh-hhhhhc
Confidence 8889999999999999999998998889999999999999999988887766789999999999999877653 567899
Q ss_pred cceEEEecCCCCCcCCCC---CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCC-CCCcccceeeec
Q 036119 757 LRRFTIWGGCPDLVSPPP---FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQ-GLPKSLLQLHIY 832 (839)
Q Consensus 757 L~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~sL~~L~i~ 832 (839)
|+.|++++|- -...+|. .+++|+.|++++|...+.+|..+..+++|+.|++++|.....+|.. .-.++|++|+++
T Consensus 501 L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 579 (968)
T PLN00113 501 LMQLKLSENK-LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579 (968)
T ss_pred cCEEECcCCc-ceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence 9999999852 2223333 3578999999999999999999999999999999999665566652 223689999999
Q ss_pred CCCC
Q 036119 833 ACPL 836 (839)
Q Consensus 833 ~c~~ 836 (839)
+|+.
T Consensus 580 ~N~l 583 (968)
T PLN00113 580 HNHL 583 (968)
T ss_pred CCcc
Confidence 9974
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=2.4e-24 Score=260.97 Aligned_cols=433 Identities=21% Similarity=0.317 Sum_probs=282.0
Q ss_pred ChhHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHhccccccccCCCcceeecHHHHHHHHHHccCceEEecccccccc
Q 036119 153 QDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLARWAAGEICFRMEDTLAGEN 232 (839)
Q Consensus 153 ~~~~li~~w~~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~mHdlv~~la~~i~~~e~~~~~~~~~~~~ 232 (839)
+.+..+...++.++++...+...|++...++-.+.+.+...++. ...+.+.++-+.+......+
T Consensus 467 ~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~--~r~~l~~~~di~~vl~~~~g-------------- 530 (1153)
T PLN03210 467 DVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPG--EREFLVDAKDICDVLEDNTG-------------- 530 (1153)
T ss_pred CchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCC--cceeEeCHHHHHHHHHhCcc--------------
Confidence 34455777888888876555567888777777776644322221 23445555444444332111
Q ss_pred cccccccceEEEEEccccchh-hcccccccccccccccccccccccchhhhHHHHHHHhcCC-CceeEEEeCCCcccccc
Q 036119 233 RQKFSESLRHFSYICGEYDGE-KRLKSICDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHL-PRLRVFSLCGYRNIFNL 310 (839)
Q Consensus 233 ~~~~~~~~r~ls~~~~~~~~~-~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~l 310 (839)
...++.+++.....+.. .....|..+++|+.|.+.....-..+...... ++.|..+ .+||+|++.++. +..+
T Consensus 531 ----~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~l-p~~~~~lp~~Lr~L~~~~~~-l~~l 604 (1153)
T PLN03210 531 ----TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHL-PEGFDYLPPKLRLLRWDKYP-LRCM 604 (1153)
T ss_pred ----cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeec-CcchhhcCcccEEEEecCCC-CCCC
Confidence 13345554433222111 11235778888888855432100111111222 2334444 469999999999 9999
Q ss_pred cccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCccEEeecccCcccccCCCCC
Q 036119 311 PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLETLDITSCDQLLVTIQCLP 390 (839)
Q Consensus 311 p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~~L~l~~~~~l~~~l~~l~ 390 (839)
|..+ ...+|+.|++++|.+ ..+|.++.. +++|+.|++++|..+. .+|. ++.++
T Consensus 605 P~~f-~~~~L~~L~L~~s~l-~~L~~~~~~-----l~~Lk~L~Ls~~~~l~-~ip~-------------------ls~l~ 657 (1153)
T PLN03210 605 PSNF-RPENLVKLQMQGSKL-EKLWDGVHS-----LTGLRNIDLRGSKNLK-EIPD-------------------LSMAT 657 (1153)
T ss_pred CCcC-CccCCcEEECcCccc-ccccccccc-----CCCCCEEECCCCCCcC-cCCc-------------------cccCC
Confidence 9888 579999999999998 567777766 9999999999976554 5553 34456
Q ss_pred CccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEE
Q 036119 391 ALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFL 470 (839)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L 470 (839)
+|++|++.+|.... .++..+.+ + ++|+.|
T Consensus 658 ~Le~L~L~~c~~L~-----------------------~lp~si~~---------------------------L-~~L~~L 686 (1153)
T PLN03210 658 NLETLKLSDCSSLV-----------------------ELPSSIQY---------------------------L-NKLEDL 686 (1153)
T ss_pred cccEEEecCCCCcc-----------------------ccchhhhc---------------------------c-CCCCEE
Confidence 66666666654221 00111111 1 367777
Q ss_pred EeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEecccCCC
Q 036119 471 ELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNS 550 (839)
Q Consensus 471 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 550 (839)
++++|...+.+|..+ ++++|+.|++++|..+..+|. .+.+|+.|.++++. ++.+|.. ..+++|+.|.+.++..
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~-i~~lP~~---~~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETA-IEEFPSN---LRLENLDELILCEMKS 759 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCc-ccccccc---ccccccccccccccch
Confidence 888777777788755 788999999999988777765 35789999998876 5566654 2467888888876543
Q ss_pred CcC------CC--CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccC
Q 036119 551 LVS------FP--EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDC 622 (839)
Q Consensus 551 l~~------~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~ 622 (839)
... ++ ....+++|+.|++++|+.+..+|..+... ++|+.|++.+|..++.+|... .+++|+.|++++|
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L---~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL---HKLEHLEIENCINLETLPTGI-NLESLESLDLSGC 835 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCCCCccccChhhhCC---CCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence 211 11 11235688888888888888887764432 478888888888887777643 4567888888888
Q ss_pred CCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccc
Q 036119 623 SKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKAL 699 (839)
Q Consensus 623 ~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 699 (839)
..+..++.. .++++.|++++|.+. .+|.++..+++|+.|++++|+.+..+|.....+++|+.+++++|..+..+
T Consensus 836 ~~L~~~p~~--~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 836 SRLRTFPDI--STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred Ccccccccc--ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 777666542 257788888877664 56777778888888888888777777777777778888888888766544
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=3.5e-25 Score=238.24 Aligned_cols=436 Identities=22% Similarity=0.203 Sum_probs=236.2
Q ss_pred HHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc-
Q 036119 288 MLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR- 366 (839)
Q Consensus 288 ~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~- 366 (839)
+++.+..+|+.|++++|. +...|..+..+.+|+.|+++.|.| ...|.+... +.+|++|+|.++ .+. .+|.
T Consensus 39 ~~~~~~v~L~~l~lsnn~-~~~fp~~it~l~~L~~ln~s~n~i-~~vp~s~~~-----~~~l~~lnL~~n-~l~-~lP~~ 109 (1081)
T KOG0618|consen 39 EFVEKRVKLKSLDLSNNQ-ISSFPIQITLLSHLRQLNLSRNYI-RSVPSSCSN-----MRNLQYLNLKNN-RLQ-SLPAS 109 (1081)
T ss_pred HHhhheeeeEEeeccccc-cccCCchhhhHHHHhhcccchhhH-hhCchhhhh-----hhcchhheeccc-hhh-cCchh
Confidence 345555669999999999 999999999999999999999998 667876666 999999999984 665 6663
Q ss_pred --CCCCccEEeecccC--cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecc
Q 036119 367 --RLLLLETLDITSCD--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQIS 442 (839)
Q Consensus 367 --~l~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~ 442 (839)
.+++|+.|+++++. ..|..+..++.+..+..++|...
T Consensus 110 ~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~--------------------------------------- 150 (1081)
T KOG0618|consen 110 ISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKI--------------------------------------- 150 (1081)
T ss_pred HHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhh---------------------------------------
Confidence 34555556665554 34444555555555555544211
Q ss_pred cCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccC
Q 036119 443 RCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEEC 522 (839)
Q Consensus 443 ~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~ 522 (839)
+.++. ..++.+++..+...+.++..+..+.. .|++.+|... ......+++|+.+....+
T Consensus 151 ---------------~~lg~--~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn 209 (1081)
T KOG0618|consen 151 ---------------QRLGQ--TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERN 209 (1081)
T ss_pred ---------------hhhcc--ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhc
Confidence 11111 13555566666555666665655555 5777776444 223334566666665554
Q ss_pred ccccccchhhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcc
Q 036119 523 DALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLA 602 (839)
Q Consensus 523 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 602 (839)
...... ..-++|+.|+..+|+..+..+ ...+.+|++++++++ .+..+|.....
T Consensus 210 ~ls~l~------~~g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n-~l~~lp~wi~~------------------- 262 (1081)
T KOG0618|consen 210 QLSELE------ISGPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHN-NLSNLPEWIGA------------------- 262 (1081)
T ss_pred ccceEE------ecCcchheeeeccCcceeecc-ccccccceeeecchh-hhhcchHHHHh-------------------
Confidence 422111 223677777777776663322 234456777777766 34445522211
Q ss_pred cccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCC-
Q 036119 603 LLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLP- 681 (839)
Q Consensus 603 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~- 681 (839)
+.+|+.+.+..|............++|+.|.+..|.+ ..+|.....+.+|++|++..|.+ .++|+.+..
T Consensus 263 --------~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel-~yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v 332 (1081)
T KOG0618|consen 263 --------CANLEALNANHNRLVALPLRISRITSLVSLSAAYNEL-EYIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAV 332 (1081)
T ss_pred --------cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhh-hhCCCcccccceeeeeeehhccc-cccchHHHhh
Confidence 2344444444443322222222335555555555554 33444455566666666666532 334432211
Q ss_pred -CCCcceEecccccccccccc-cCcccccccccccccccCCccCCC-CCCCCCcceEEecCCCCCCccccccCCCccccc
Q 036119 682 -STKLTELTIYDCENLKALPN-CMHNLTSLLNLKISECPSVVSFPE-DGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLR 758 (839)
Q Consensus 682 -~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 758 (839)
..+|+.|+.+.|+ +...|. +=...+.|+.|.+.+|.+...... ...++.|++|++++|++.. +|+....+++.|+
T Consensus 333 ~~~~l~~ln~s~n~-l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas~~~kle~Le 410 (1081)
T KOG0618|consen 333 LNASLNTLNVSSNK-LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPASKLRKLEELE 410 (1081)
T ss_pred hhHHHHHHhhhhcc-ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-CCHHHHhchHHhH
Confidence 1224444444443 222221 112344555555555555443322 2445556666666655542 3444455555555
Q ss_pred eEEEecCCCCCcCCCC---CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccC-CCCCC-cccceeeecC
Q 036119 759 RFTIWGGCPDLVSPPP---FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFS-EQGLP-KSLLQLHIYA 833 (839)
Q Consensus 759 ~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~-~sL~~L~i~~ 833 (839)
.|.++|| .+..+|. .+..|+.|...+| .+...| .+..++.|+.+|+|.| +|+.+. +...| |.|++|+++|
T Consensus 411 eL~LSGN--kL~~Lp~tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 411 ELNLSGN--KLTTLPDTVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSG 485 (1081)
T ss_pred HHhcccc--hhhhhhHHHHhhhhhHHHhhcCC-ceeech-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccC
Confidence 5666553 2333333 2344555555555 233445 4555666666666643 555432 23344 5666666666
Q ss_pred CCC
Q 036119 834 CPL 836 (839)
Q Consensus 834 c~~ 836 (839)
++.
T Consensus 486 N~~ 488 (1081)
T KOG0618|consen 486 NTR 488 (1081)
T ss_pred Ccc
Confidence 653
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=3e-27 Score=230.24 Aligned_cols=451 Identities=23% Similarity=0.263 Sum_probs=241.4
Q ss_pred HhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcC-
Q 036119 289 LLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRR- 367 (839)
Q Consensus 289 ~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~- 367 (839)
.+.++..|.+|++.+|. ..++|.+++++..++.|+.++|++ ..+|..++. +.+|..|+++++ .+. .+|+.
T Consensus 63 dl~nL~~l~vl~~~~n~-l~~lp~aig~l~~l~~l~vs~n~l-s~lp~~i~s-----~~~l~~l~~s~n-~~~-el~~~i 133 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNK-LSQLPAAIGELEALKSLNVSHNKL-SELPEQIGS-----LISLVKLDCSSN-ELK-ELPDSI 133 (565)
T ss_pred hhhcccceeEEEeccch-hhhCCHHHHHHHHHHHhhcccchH-hhccHHHhh-----hhhhhhhhcccc-cee-ecCchH
Confidence 35666677777777777 667777777777777777777776 456666655 677777777764 444 45543
Q ss_pred --CCCccEEeecccC--cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceeccc
Q 036119 368 --LLLLETLDITSCD--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISR 443 (839)
Q Consensus 368 --l~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~ 443 (839)
+..|+.|+...+. .+|..++.+.+|..|.+.+|.....++. . ..++.|++++...
T Consensus 134 ~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~--------------------~-i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 134 GRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPEN--------------------H-IAMKRLKHLDCNS 192 (565)
T ss_pred HHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHH--------------------H-HHHHHHHhcccch
Confidence 3344455444443 5566666666666666666653331110 0 0022222222111
Q ss_pred CCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCC--CCCCCccEEEecc
Q 036119 444 CPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQA--ALPSQLRSVVIEE 521 (839)
Q Consensus 444 ~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~--~~~~~L~~L~l~~ 521 (839)
- -++.++ ..++.+ .+|+.|++..|.+ ..+| .|.++..|+++.+..| .+..+|.. ..++++..|++.+
T Consensus 193 N-~L~tlP------~~lg~l-~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 193 N-LLETLP------PELGGL-ESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRD 261 (565)
T ss_pred h-hhhcCC------hhhcch-hhhHHHHhhhccc-ccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccc
Confidence 0 000000 001111 3555566666655 3455 4666666666666554 34444432 2366666777766
Q ss_pred CccccccchhhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEE-eecCC
Q 036119 522 CDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEV-SYCSN 600 (839)
Q Consensus 522 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l-~~c~~ 600 (839)
|+ ++.+|... .-+.+|+.|++++|....-.+..+.+ .|+.|.+.+++ ++.+......+....-|++|.- ..|..
T Consensus 262 Nk-lke~Pde~--clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 262 NK-LKEVPDEI--CLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred cc-cccCchHH--HHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 64 55556543 33456777777766544333344555 66666666664 2333222222111111111110 00000
Q ss_pred ccc------cc---CCCCc-----ccccceeEeccCCCchhhhhh----cCCCCcceeeecccccccCccccccCCCCCC
Q 036119 601 LAL------LS---RNGNL-----PQSLKYLKIEDCSKLESLAER----LDNTSLEEISISVLENLKSLPADLHNLHHLQ 662 (839)
Q Consensus 601 l~~------~~---~~~~~-----~~~L~~L~l~~~~~l~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 662 (839)
+.. .. ..+.+ ..+.+.|.+++- .+..+|.. ....-...++++.|++ ..+|..+..+..+.
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskNqL-~elPk~L~~lkelv 414 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKNQL-CELPKRLVELKELV 414 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccchH-hhhhhhhHHHHHHH
Confidence 000 00 00111 124566666553 23333322 1123366777777766 34565555555555
Q ss_pred eEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCC
Q 036119 663 KIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLK 741 (839)
Q Consensus 663 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~ 741 (839)
+.-+..+...+-+|..+..+++|..|++++| .+..+|..++.+..|+.|+++.|++- .+|.. ..+..|+.+-.++|+
T Consensus 415 T~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 415 TDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred HHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccc
Confidence 5444455555556666666777777888765 56777777777777888888877653 45544 233445555555565
Q ss_pred CCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCC
Q 036119 742 ISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPK 813 (839)
Q Consensus 742 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~ 813 (839)
+.. ++..+..++. +|..||+.+| .+..+|..++++++|++|++++||.
T Consensus 493 i~~-vd~~~l~nm~----------------------nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 493 IGS-VDPSGLKNMR----------------------NLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ccc-cChHHhhhhh----------------------hcceeccCCC-chhhCChhhccccceeEEEecCCcc
Confidence 543 2222233333 5677777777 5577888999999999999999964
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=3.4e-24 Score=218.59 Aligned_cols=266 Identities=17% Similarity=0.170 Sum_probs=127.4
Q ss_pred CceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCC--CCCCCccEEEeccCcccccc-chhhhhCCCCccce
Q 036119 466 RLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQA--ALPSQLRSVVIEECDALESL-PEAWMQNSNSSLEC 542 (839)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~--~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~ 542 (839)
++++|+|++|.+..--...|.++.+|..|.++.| .++.+|.. ..+|+|+.|++..|.. +.+ ...| .++++|+.
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~i-rive~ltF--qgL~Sl~n 249 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRI-RIVEGLTF--QGLPSLQN 249 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccce-eeehhhhh--cCchhhhh
Confidence 5555666655554333344555555666666554 33333332 1255555555555432 111 1111 44555555
Q ss_pred EecccCCCCcCCC-CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEecc
Q 036119 543 LAIRSCNSLVSFP-EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIED 621 (839)
Q Consensus 543 L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~ 621 (839)
|.+..|..-+--. .+..+.+++.|++..+ .+..+..+++.+. ++|+.|+++++..-..-...-.+.++|+.|++++
T Consensus 250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgL--t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~ 326 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGL--TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS 326 (873)
T ss_pred hhhhhcCcccccCcceeeecccceeecccc-hhhhhhccccccc--chhhhhccchhhhheeecchhhhcccceeEeccc
Confidence 5555543322111 1223345555555554 2333433333332 3444555554432221112223345566666665
Q ss_pred CCCchhhhhhcC-CCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCC---CCCCCCCcceEecccccccc
Q 036119 622 CSKLESLAERLD-NTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPE---EGLPSTKLTELTIYDCENLK 697 (839)
Q Consensus 622 ~~~l~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~l~ 697 (839)
|...+--+..+. ...|+.|+|++|++.......|..+.+|++|++++|.+.-.+.+ .+..+++|+.|.+.+|+ ++
T Consensus 327 N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk 405 (873)
T KOG4194|consen 327 NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LK 405 (873)
T ss_pred cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-ee
Confidence 543322222222 25566666666665544444455666666666666654332221 33445666666666653 44
Q ss_pred ccc-ccCcccccccccccccccCCccCCCCCCCCCcceEEecC
Q 036119 698 ALP-NCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHD 739 (839)
Q Consensus 698 ~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 739 (839)
.+| ..|.++++|+.|++.+|.+...-|.......|++|.++.
T Consensus 406 ~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nS 448 (873)
T KOG4194|consen 406 SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNS 448 (873)
T ss_pred ecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcc
Confidence 444 245666666666666666655555444444666665543
No 9
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.89 E-value=1.2e-24 Score=225.46 Aligned_cols=166 Identities=41% Similarity=0.735 Sum_probs=124.3
Q ss_pred hhhhcCCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHHHhCC-CCeEeCCCCCcccccCcC-----
Q 036119 2 LKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGA-DPVYQLKELSDDDCLDFT----- 75 (839)
Q Consensus 2 l~~~l~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~-~~~~~~~~l~~~~~~~~~----- 75 (839)
+++.|+++++||||||||+. .+|+.+...++.+..||+||||||+++++..++. ...|+|++|+++||++++
T Consensus 94 l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 171 (287)
T PF00931_consen 94 LRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAG 171 (287)
T ss_dssp HHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHT
T ss_pred chhhhccccceeeeeeeccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67889999999999999875 5899999888888889999999999999877765 679999999999999432
Q ss_pred -----CCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHHHHHhccccccCC-----CCCcchhc---------h
Q 036119 76 -----RHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWNLRD-----SDILPALR---------L 136 (839)
Q Consensus 76 -----~~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~~~~~~~~~~~~-----~~~~~~l~---------~ 136 (839)
..+.+.+.+.+|+++|+|+|||++++|+.|+.+.+.++|+.+++...+...+ ..+...+. +
T Consensus 172 ~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~ 251 (287)
T PF00931_consen 172 RKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDEL 251 (287)
T ss_dssp SHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccH
Confidence 1244568999999999999999999999997766778999988753333321 12233332 8
Q ss_pred hhhhhhhccCCCCcccChhHHHHHHHHcCCCcc
Q 036119 137 KQCFAYSSLFPKDYEFQDEEIILLWTAEGFLDQ 169 (839)
Q Consensus 137 k~~f~~~a~f~~~~~~~~~~li~~w~~~g~~~~ 169 (839)
|.||.|||+||+++.|+++.++++|+++||+..
T Consensus 252 ~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 252 RRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred HHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999999999999999999999999975
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=1.7e-24 Score=232.98 Aligned_cols=396 Identities=24% Similarity=0.282 Sum_probs=233.9
Q ss_pred ccccccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCC
Q 036119 258 SICDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCG 337 (839)
Q Consensus 258 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~ 337 (839)
.+..+.+|+.| .+..|+ ....|....++++|++|.|.+|. ...+|.++..+++|++||+++|.+ +.+|.-
T Consensus 63 ~it~l~~L~~l------n~s~n~--i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~f-~~~Pl~ 132 (1081)
T KOG0618|consen 63 QITLLSHLRQL------NLSRNY--IRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNHF-GPIPLV 132 (1081)
T ss_pred hhhhHHHHhhc------ccchhh--HhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchhcc-CCCchh
Confidence 34455666666 444444 34455678899999999999998 899999999999999999999988 566655
Q ss_pred CCCCccccCCCccEEeccCccccccCCCcCCCCccEEeecccC---cccccCCCCCCccEEEecccccee--ecCCCccc
Q 036119 338 AGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLETLDITSCD---QLLVTIQCLPALSELQIDGCKRVV--FSSPHLVH 412 (839)
Q Consensus 338 ~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~~L~l~~~~---~l~~~l~~l~~L~~L~l~~~~~~~--~~~~~~l~ 412 (839)
+.. ++.+..+..++|.++. .++..- .+.+++..+. .++..+.+++. .|++..|.... ......++
T Consensus 133 i~~-----lt~~~~~~~s~N~~~~-~lg~~~--ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~ 202 (1081)
T KOG0618|consen 133 IEV-----LTAEEELAASNNEKIQ-RLGQTS--IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLE 202 (1081)
T ss_pred HHh-----hhHHHHHhhhcchhhh-hhcccc--chhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccchh
Confidence 444 6666666666652222 222211 3333333332 23333333433 45555544321 00000000
Q ss_pred eeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCcc
Q 036119 413 AVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLT 492 (839)
Q Consensus 413 ~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 492 (839)
.++... .....+...-++|+.|....++-.+. .....|.+|++++++.+.+ ..+|.|+..+++|+
T Consensus 203 ~l~c~r-----n~ls~l~~~g~~l~~L~a~~n~l~~~---------~~~p~p~nl~~~dis~n~l-~~lp~wi~~~~nle 267 (1081)
T KOG0618|consen 203 VLHCER-----NQLSELEISGPSLTALYADHNPLTTL---------DVHPVPLNLQYLDISHNNL-SNLPEWIGACANLE 267 (1081)
T ss_pred hhhhhh-----cccceEEecCcchheeeeccCcceee---------ccccccccceeeecchhhh-hcchHHHHhcccce
Confidence 000000 00001112233444444444432211 1111235777788877776 56777777788888
Q ss_pred EEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEecccCCCCcCCC-CCCCCCCccEEEEcCC
Q 036119 493 EMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFP-EVALPSQLRTIIIGGC 571 (839)
Q Consensus 493 ~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~ 571 (839)
.+++.+|.. ..+| ... ....+|+.|.+..|. ++.+| ......+|++|++..+
T Consensus 268 ~l~~n~N~l-~~lp-----------------------~ri--~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 268 ALNANHNRL-VALP-----------------------LRI--SRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred EecccchhH-HhhH-----------------------HHH--hhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhc
Confidence 777777633 2222 111 122455555555543 23333 2334566777777766
Q ss_pred CCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhh--hhcCCCCcceeeeccccccc
Q 036119 572 HALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLA--ERLDNTSLEEISISVLENLK 649 (839)
Q Consensus 572 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~ 649 (839)
++..+|...+... + .+|..|+.+.++ +...+ +......|+.|.+.+|.++.
T Consensus 321 -~L~~lp~~~l~v~-~------------------------~~l~~ln~s~n~-l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 321 -NLPSLPDNFLAVL-N------------------------ASLNTLNVSSNK-LSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred -cccccchHHHhhh-h------------------------HHHHHHhhhhcc-ccccccccchhhHHHHHHHHhcCcccc
Confidence 3555555333211 0 112222222221 11111 11123567788888888887
Q ss_pred CccccccCCCCCCeEEecCCCCCcccCC-CCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCC
Q 036119 650 SLPADLHNLHHLQKIWIFGCPNLESFPE-EGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGF 728 (839)
Q Consensus 650 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 728 (839)
...+.+.++.+|+.|++++|.. ..+|. .+..++.|++|++|+| .++.+|..+..++.|+.|...+|.+. .+|+...
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL-~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~ 450 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRL-NSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLL-SFPELAQ 450 (1081)
T ss_pred cchhhhccccceeeeeeccccc-ccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCcee-echhhhh
Confidence 7766888999999999999954 45665 5667889999999998 57889999999999999999988876 6777788
Q ss_pred CCCcceEEecCCCCCCc
Q 036119 729 PTNLQSLDVHDLKISKP 745 (839)
Q Consensus 729 ~~~L~~L~l~~~~~~~~ 745 (839)
++.|+.+|+|.|.+...
T Consensus 451 l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred cCcceEEecccchhhhh
Confidence 99999999999988753
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=4.1e-23 Score=210.76 Aligned_cols=340 Identities=15% Similarity=0.079 Sum_probs=172.8
Q ss_pred CcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCC-CCccEEEeccCccccccchhhhhCCCCccc
Q 036119 463 LPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALP-SQLRSVVIEECDALESLPEAWMQNSNSSLE 541 (839)
Q Consensus 463 l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 541 (839)
+|+.-+.|++++|.+...-+..+.++++|+++++.+| .++.+|..+.. ..|+.|++.+|..-+.-.... ..++.|+
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L--~~l~alr 152 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEEL--SALPALR 152 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHH--HhHhhhh
Confidence 4467788899888876656667788999999998876 67778877664 448888888876433222222 3457788
Q ss_pred eEecccCCCCcCCC--CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEe
Q 036119 542 CLAIRSCNSLVSFP--EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKI 619 (839)
Q Consensus 542 ~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l 619 (839)
.|+++.|.. ..++ .+..-.++++|++.++. +..+..+.+... .+|..|.++++...+.....+..++.|+.|++
T Consensus 153 slDLSrN~i-s~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~l--nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 153 SLDLSRNLI-SEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSL--NSLLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhhchh-hcccCCCCCCCCCceEEeecccc-cccccccccccc--chheeeecccCcccccCHHHhhhcchhhhhhc
Confidence 888877643 3333 22333467777777763 344443333332 35555666655433322222332345566655
Q ss_pred ccCCCchh-hhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccc
Q 036119 620 EDCSKLES-LAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKA 698 (839)
Q Consensus 620 ~~~~~l~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 698 (839)
..|..-.. ....-+.++|+.|.+..|.+..---..|..+.++++|++..|+....-..++.++++|+.|++|+|.+...
T Consensus 229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence 55432111 11111224555555555544332222344455555555555544333333444455555555555544444
Q ss_pred ccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCC----CCCcCC-
Q 036119 699 LPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGC----PDLVSP- 772 (839)
Q Consensus 699 lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~----~~~~~~- 772 (839)
-+++...+++|++|++++|.+...-+.. ..+..|++|++++|++.. +.+..+..+.+|+.|++..|- .+..+.
T Consensus 309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~ 387 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA 387 (873)
T ss_pred ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence 4444455555555555555543222221 334455555555555442 122233444444444444331 111110
Q ss_pred CCCCcccceeeecCCCCCCcccc-CCCCCCccCeeeccCC
Q 036119 773 PPFPASLTNLWISDMPDLESISS-IGENLTSLKTLRLSDC 811 (839)
Q Consensus 773 ~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c 811 (839)
...+++|++|++.+|.. +.||. .+..+++|++|++.+|
T Consensus 388 f~gl~~LrkL~l~gNql-k~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQL-KSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred hccchhhhheeecCcee-eecchhhhccCcccceecCCCC
Confidence 11244555555555532 33332 2355666666666655
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=2.8e-24 Score=220.56 Aligned_cols=357 Identities=19% Similarity=0.260 Sum_probs=206.3
Q ss_pred cccchhhhHHHHHHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEec
Q 036119 275 HFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSL 354 (839)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L 354 (839)
.+..|.+....+|.....|++++.|.|.... +..+|+.++.|.+|++|.+++|++. .+-.++.. |+.|+.+++
T Consensus 13 DfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~-----Lp~LRsv~~ 85 (1255)
T KOG0444|consen 13 DFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LEQVPEELSRLQKLEHLSMAHNQLI-SVHGELSD-----LPRLRSVIV 85 (1255)
T ss_pred cccCCcCCCCcCchhHHHhhheeEEEechhh-hhhChHHHHHHhhhhhhhhhhhhhH-hhhhhhcc-----chhhHHHhh
Confidence 4455666666677778899999999999998 9999999999999999999999873 34444555 899999999
Q ss_pred cCccccccCCCc---CCCCccEEeecccC--cccccCCCCCCccEEEeccccceeecCCCccceeeeccccccccccccc
Q 036119 355 DNCCKLQGTLPR---RLLLLETLDITSCD--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRL 429 (839)
Q Consensus 355 ~~~~~l~~~lp~---~l~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~ 429 (839)
+.|+--...+|. .+..|+.|+++.+. .+|..+..-+++-+|++++|+..+++.. +
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~--------------------l 145 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNS--------------------L 145 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCch--------------------H
Confidence 986433335665 34456666666665 6667777777777777777664432221 0
Q ss_pred CCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCc-ccCCC
Q 036119 430 PQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLV-SFPQA 508 (839)
Q Consensus 430 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~l~~~ 508 (839)
+-+| ..|-.|+|++|.. +.+|+.+..+.+|++|.+++|+..- .+...
T Consensus 146 ---finL----------------------------tDLLfLDLS~NrL-e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL 193 (1255)
T KOG0444|consen 146 ---FINL----------------------------TDLLFLDLSNNRL-EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL 193 (1255)
T ss_pred ---HHhh----------------------------HhHhhhccccchh-hhcCHHHHHHhhhhhhhcCCChhhHHHHhcC
Confidence 0011 2455667777666 6677777777777777777775321 11111
Q ss_pred CCCCCccEEEeccCcc-ccccchhhhhCCCCccceEecccCCCCcCCC-CCCCCCCccEEEEcCCCCCcCCchhhhcccC
Q 036119 509 ALPSQLRSVVIEECDA-LESLPEAWMQNSNSSLECLAIRSCNSLVSFP-EVALPSQLRTIIIGGCHALESLPEAWMHNEL 586 (839)
Q Consensus 509 ~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 586 (839)
..+.+|+.|.+++... +..+|... ..+.+|..++++.|+.. .+| ....+++|+.|+++++.
T Consensus 194 PsmtsL~vLhms~TqRTl~N~Ptsl--d~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~-------------- 256 (1255)
T KOG0444|consen 194 PSMTSLSVLHMSNTQRTLDNIPTSL--DDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNK-------------- 256 (1255)
T ss_pred ccchhhhhhhcccccchhhcCCCch--hhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCc--------------
Confidence 1233444444444322 22233222 23345555555443221 222 12233344444444432
Q ss_pred CCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhc-CCCCcceeeecccccc-cCccccccCCCCCCeE
Q 036119 587 PATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENL-KSLPADLHNLHHLQKI 664 (839)
Q Consensus 587 ~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L 664 (839)
++.+........+|++|+++.|.. ..+|..+ ..+.|+.|.+.+|++. .-+|++++.+..|+.+
T Consensus 257 --------------iteL~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 257 --------------ITELNMTEGEWENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred --------------eeeeeccHHHHhhhhhhccccchh-ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 111111111223455666655532 2333322 2356666666666544 4456666666666666
Q ss_pred EecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCC
Q 036119 665 WIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFP 724 (839)
Q Consensus 665 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 724 (839)
...+| .++.+|+.+..|+.|+.|.++.|. +-++|+.++-++-|+.|++..|+.+...|
T Consensus 322 ~aanN-~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 322 HAANN-KLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred Hhhcc-ccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCC
Confidence 66665 455666666666666666665553 44466666666666666666666665444
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.4e-23 Score=215.45 Aligned_cols=358 Identities=19% Similarity=0.230 Sum_probs=248.2
Q ss_pred cCCCceeEEEeCCCccc-ccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC---c
Q 036119 291 NHLPRLRVFSLCGYRNI-FNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP---R 366 (839)
Q Consensus 291 ~~l~~L~~L~L~~~~~~-~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp---~ 366 (839)
+-++-.|-.|+++|.+. ...|+++..+..++.|.|..+++ ..+|.+++. |.+|++|.+++| ++. .+- +
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-~~vPeEL~~-----lqkLEHLs~~HN-~L~-~vhGELs 75 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-EQVPEELSR-----LQKLEHLSMAHN-QLI-SVHGELS 75 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh-hhChHHHHH-----Hhhhhhhhhhhh-hhH-hhhhhhc
Confidence 34567888999999866 56999999999999999999998 678888877 999999999996 554 222 2
Q ss_pred CCCCccEEeecccC----cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecc
Q 036119 367 RLLLLETLDITSCD----QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQIS 442 (839)
Q Consensus 367 ~l~~L~~L~l~~~~----~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~ 442 (839)
.++.|+.+.+..+. .+|..+-.+..|..|+++.|+.... +. +|+.
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev------------------------P~---~LE~---- 124 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV------------------------PT---NLEY---- 124 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhc------------------------ch---hhhh----
Confidence 46667777666554 6777777777888888777753221 11 1110
Q ss_pred cCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccc-cCCCCCccEEeecCCCCCcccCC-CCCCCCccEEEec
Q 036119 443 RCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQA-LLTLSSLTEMRIHDCASLVSFPQ-AALPSQLRSVVIE 520 (839)
Q Consensus 443 ~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~l~~-~~~~~~L~~L~l~ 520 (839)
..++-.|+|++|++ ..+|.. +.+++.|-.|++++| .+..+|+ ...+..|++|.++
T Consensus 125 ---------------------AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 125 ---------------------AKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred ---------------------hcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcC
Confidence 03667788888877 566653 457888888888886 4555554 3346677777777
Q ss_pred cCccccccchhhhhCCCCccceEecccCCCC-cCCC-CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeec
Q 036119 521 ECDALESLPEAWMQNSNSSLECLAIRSCNSL-VSFP-EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYC 598 (839)
Q Consensus 521 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 598 (839)
+|+.... ... ...++++|+.|.+++.... ..+| .+..+.+|..++++.+
T Consensus 182 ~NPL~hf-QLr-QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N--------------------------- 232 (1255)
T KOG0444|consen 182 NNPLNHF-QLR-QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN--------------------------- 232 (1255)
T ss_pred CChhhHH-HHh-cCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc---------------------------
Confidence 7653211 000 0022344555555543321 2233 2223334444444433
Q ss_pred CCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCC-cccCC
Q 036119 599 SNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNL-ESFPE 677 (839)
Q Consensus 599 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~ 677 (839)
. +..+|...-..++|+.|++++|...+--.....-.+|++|+++.|++ ..+|..++.+++|+.|.+.+|+.. +-+|.
T Consensus 233 ~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 233 N-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred C-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh-ccchHHHhhhHHHHHHHhccCcccccCCcc
Confidence 2 22222222224679999999986543222212237899999999988 468999999999999999999865 45899
Q ss_pred CCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCC
Q 036119 678 EGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 678 ~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~ 743 (839)
.++.+.+|+++..++| .+..+|+++..|+.|++|.++.|+.++ +|.. ..++.|+.||+..|+..
T Consensus 311 GIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred chhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCc
Confidence 9999999999999887 689999999999999999999999875 5554 88999999999999876
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=1.7e-24 Score=211.11 Aligned_cols=406 Identities=20% Similarity=0.229 Sum_probs=212.7
Q ss_pred HHHHHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccC
Q 036119 284 SVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGT 363 (839)
Q Consensus 284 ~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 363 (839)
..+|..+..+..|+.|+.+.|. ...+|++++.+..|..|+..+|++ ..+|.++.. +.+|..|++.+| ++. .
T Consensus 104 s~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N~i-~slp~~~~~-----~~~l~~l~~~~n-~l~-~ 174 (565)
T KOG0472|consen 104 SELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNNQI-SSLPEDMVN-----LSKLSKLDLEGN-KLK-A 174 (565)
T ss_pred hhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhhhhhcccccc-ccCchHHHH-----HHHHHHhhcccc-chh-h
Confidence 3445556677777777777777 777777777777777777777777 456666665 777777777774 555 5
Q ss_pred CCc---CCCCccEEeecccC--cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCc
Q 036119 364 LPR---RLLLLETLDITSCD--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNW 438 (839)
Q Consensus 364 lp~---~l~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~ 438 (839)
+|. .+..|++|+...+. .+|..++.+.+|..|++..|+....+++ ..+..|++
T Consensus 175 l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef----------------------~gcs~L~E 232 (565)
T KOG0472|consen 175 LPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEF----------------------PGCSLLKE 232 (565)
T ss_pred CCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCC----------------------CccHHHHH
Confidence 553 45667777665554 6777788888888887777765443321 22222333
Q ss_pred eecccCCCcccccccccccCCC-----CCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC-CCCCC
Q 036119 439 LQISRCPQLISLVTVEEHDQQQ-----PELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ-AALPS 512 (839)
Q Consensus 439 L~l~~~~~l~~~~~~~~~~~~~-----~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~~ 512 (839)
+++. ++....+ ..+ +++..||+++|++ +++|..+..+.+|++|++++|. +..+|. .+.+
T Consensus 233 lh~g-----------~N~i~~lpae~~~~L-~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl- 297 (565)
T KOG0472|consen 233 LHVG-----------ENQIEMLPAEHLKHL-NSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL- 297 (565)
T ss_pred HHhc-----------ccHHHhhHHHHhccc-ccceeeecccccc-ccCchHHHHhhhhhhhcccCCc-cccCCcccccc-
Confidence 3221 1111111 112 5788899999887 7888888888999999998874 445544 4445
Q ss_pred CccEEEeccCccccccchhhhhC-CCCccceEec-------ccCCC---------CcCCCCCCCCCCccEEEEcCCCCCc
Q 036119 513 QLRSVVIEECDALESLPEAWMQN-SNSSLECLAI-------RSCNS---------LVSFPEVALPSQLRTIIIGGCHALE 575 (839)
Q Consensus 513 ~L~~L~l~~~~~l~~~~~~~~~~-~~~~L~~L~l-------~~~~~---------l~~~~~~~~~~~L~~L~l~~~~~l~ 575 (839)
.|+.|.+.+|+.- .+....... .-.-|++|.= +.-.. -..+|......+.+.|.+++- .+.
T Consensus 298 hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt 375 (565)
T KOG0472|consen 298 HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLT 375 (565)
T ss_pred eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccc
Confidence 8888888888732 222111111 1111222211 00000 001111122234555655554 355
Q ss_pred CCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccc
Q 036119 576 SLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADL 655 (839)
Q Consensus 576 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 655 (839)
.+|...+...-..-...++++.+. +..+|.... ....+.+.-+..++..+.+|..+
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNq-L~elPk~L~-----------------------~lkelvT~l~lsnn~isfv~~~l 431 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQ-LCELPKRLV-----------------------ELKELVTDLVLSNNKISFVPLEL 431 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccch-HhhhhhhhH-----------------------HHHHHHHHHHhhcCccccchHHH
Confidence 566555543211123344444432 111111100 01222222223333345555555
Q ss_pred cCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCC-CCCCCCcce
Q 036119 656 HNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPE-DGFPTNLQS 734 (839)
Q Consensus 656 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~ 734 (839)
+.+++|..|++++| .+..+|..++.+..|+.|+++.| ....+|..+..+..|+.+-.++|++...-+. ...+.+|.+
T Consensus 432 ~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred Hhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 55666666666555 34455555555555666666655 2344555444444444444444444322222 144455555
Q ss_pred EEecCCCCCCccccccCCCccccceEEEecC
Q 036119 735 LDVHDLKISKPLLEWGSNRFTSLRRFTIWGG 765 (839)
Q Consensus 735 L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~ 765 (839)
||+.+|.+....|. ..++++|++|.++||
T Consensus 510 LDL~nNdlq~IPp~--LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 510 LDLQNNDLQQIPPI--LGNMTNLRHLELDGN 538 (565)
T ss_pred eccCCCchhhCChh--hccccceeEEEecCC
Confidence 55555555443332 245555555555554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=6.1e-15 Score=165.63 Aligned_cols=73 Identities=25% Similarity=0.275 Sum_probs=55.8
Q ss_pred CceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCccE
Q 036119 294 PRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLET 373 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~~ 373 (839)
..-..|+++++. +..+|..+. .+|+.|++++|++. .+|.. .++|++|++++| +++ .+|...++|++
T Consensus 201 ~~~~~LdLs~~~-LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~l--------p~~Lk~LdLs~N-~Lt-sLP~lp~sL~~ 266 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNNLT-SLPAL--------PPELRTLEVSGN-QLT-SLPVLPPGLLE 266 (788)
T ss_pred CCCcEEEcCCCC-CCcCCcchh--cCCCEEEccCCcCC-CCCCC--------CCCCcEEEecCC-ccC-cccCcccccce
Confidence 457789999998 889998876 48999999999985 46642 678999999996 777 67765556666
Q ss_pred EeecccC
Q 036119 374 LDITSCD 380 (839)
Q Consensus 374 L~l~~~~ 380 (839)
|++.+|.
T Consensus 267 L~Ls~N~ 273 (788)
T PRK15387 267 LSIFSNP 273 (788)
T ss_pred eeccCCc
Confidence 6665543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=1.4e-14 Score=162.84 Aligned_cols=91 Identities=34% Similarity=0.431 Sum_probs=48.8
Q ss_pred CceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEec
Q 036119 466 RLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAI 545 (839)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 545 (839)
+-..|+++++.+ ..+|..+. ++|+.|.+.+| .++.+|. .+++|++|++++|. ++.+|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~L-tsLP~~l~--~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l-----p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGL-TTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPVL-----PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCC-CcCCcchh--cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCc-cCcccCc-----ccccceeec
Confidence 345666766655 35665543 36777777765 3444553 35666666666653 4444421 245666666
Q ss_pred ccCCCCcCCCCCCCCCCccEEEEcCC
Q 036119 546 RSCNSLVSFPEVALPSQLRTIIIGGC 571 (839)
Q Consensus 546 ~~~~~l~~~~~~~~~~~L~~L~l~~~ 571 (839)
.+|. +..+|. .+++|+.|++++|
T Consensus 270 s~N~-L~~Lp~--lp~~L~~L~Ls~N 292 (788)
T PRK15387 270 FSNP-LTHLPA--LPSGLCKLWIFGN 292 (788)
T ss_pred cCCc-hhhhhh--chhhcCEEECcCC
Confidence 6553 233332 2345555555555
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=1.3e-12 Score=148.21 Aligned_cols=244 Identities=21% Similarity=0.301 Sum_probs=151.8
Q ss_pred CccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCccccccee
Q 036119 538 SSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYL 617 (839)
Q Consensus 538 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L 617 (839)
.+...|.++++ .++.+|.. .+++++.|++++| .+..+|.... ++|+.|++++|. ++.++. .++++|+.|
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~-Ip~~L~~L~Ls~N-~LtsLP~~l~-----~nL~~L~Ls~N~-LtsLP~--~l~~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPAC-IPEQITTLILDNN-ELKSLPENLQ-----GNIKTLYANSNQ-LTSIPA--TLPDTIQEM 246 (754)
T ss_pred cCceEEEeCCC-CcCcCCcc-cccCCcEEEecCC-CCCcCChhhc-----cCCCEEECCCCc-cccCCh--hhhccccEE
Confidence 45677888775 45566642 3568999999888 5667776442 478888888774 455543 345678888
Q ss_pred EeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccc
Q 036119 618 KIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLK 697 (839)
Q Consensus 618 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 697 (839)
++++|... .+|..+. .+|+.|++++|++. .+|..+ .++|+.|++++|.+. .+|..+. ++|+.|++++|.. .
T Consensus 247 ~Ls~N~L~-~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~L-t 317 (754)
T PRK15370 247 ELSINRIT-ELPERLP-SALQSLDLFHNKIS-CLPENL--PEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSL-T 317 (754)
T ss_pred ECcCCccC-cCChhHh-CCCCEEECcCCccC-cccccc--CCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcc-c
Confidence 88887543 4544332 57888888877765 456544 257888888887544 4554332 3788888887754 3
Q ss_pred cccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCC-CC
Q 036119 698 ALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP-FP 776 (839)
Q Consensus 698 ~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~ 776 (839)
.+|..+ .++|+.|++++|.+.. +|. ..+++|+.|++++|++.. +|.. -.++|+.|++++| .+..+|. ++
T Consensus 318 ~LP~~l--~~sL~~L~Ls~N~Lt~-LP~-~l~~sL~~L~Ls~N~L~~-LP~~---lp~~L~~LdLs~N--~Lt~LP~~l~ 387 (754)
T PRK15370 318 ALPETL--PPGLKTLEAGENALTS-LPA-SLPPELQVLDVSKNQITV-LPET---LPPTITTLDVSRN--ALTNLPENLP 387 (754)
T ss_pred cCCccc--cccceeccccCCcccc-CCh-hhcCcccEEECCCCCCCc-CChh---hcCCcCEEECCCC--cCCCCCHhHH
Confidence 455543 2578888888887653 553 234678888888887663 3321 1246666777663 2334443 44
Q ss_pred cccceeeecCCCCCCccccCC----CCCCccCeeeccCCC
Q 036119 777 ASLTNLWISDMPDLESISSIG----ENLTSLKTLRLSDCP 812 (839)
Q Consensus 777 ~~L~~L~l~~~~~l~~~~~~~----~~l~~L~~L~l~~c~ 812 (839)
.+|+.|++++|... .+|..+ ..++++..|++.+|+
T Consensus 388 ~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 388 AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCC
Confidence 56667777766443 444332 334566666666664
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.37 E-value=1.6e-14 Score=141.95 Aligned_cols=101 Identities=25% Similarity=0.248 Sum_probs=67.2
Q ss_pred eeEEEeCCCccccccc-ccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc----CCCC
Q 036119 296 LRVFSLCGYRNIFNLP-NEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR----RLLL 370 (839)
Q Consensus 296 L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~----~l~~ 370 (839)
-..++|..|. |..+| .+|+.+++||.||||+|.|..+-|+++.- +.+|-.|-+.++++++ .+|+ ++..
T Consensus 69 tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G-----L~~l~~Lvlyg~NkI~-~l~k~~F~gL~s 141 (498)
T KOG4237|consen 69 TVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG-----LASLLSLVLYGNNKIT-DLPKGAFGGLSS 141 (498)
T ss_pred ceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhh-----hHhhhHHHhhcCCchh-hhhhhHhhhHHH
Confidence 4556677777 77776 56777777777777777776666666555 7777777777666776 6764 4445
Q ss_pred ccEEeecccC---cccccCCCCCCccEEEeccccce
Q 036119 371 LETLDITSCD---QLLVTIQCLPALSELQIDGCKRV 403 (839)
Q Consensus 371 L~~L~l~~~~---~l~~~l~~l~~L~~L~l~~~~~~ 403 (839)
|+-|.+..+. .....+..+++|..|++..|..-
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence 5555554443 23466778888888888777543
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.37 E-value=4.1e-14 Score=139.16 Aligned_cols=360 Identities=17% Similarity=0.107 Sum_probs=208.6
Q ss_pred CcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC-CCCCCCccEEEeccCccccccchhhhhCCCCccc
Q 036119 463 LPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNSSLE 541 (839)
Q Consensus 463 l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 541 (839)
+|+....++|..|.+..--+..|+.+++|+.|+|++|.+-..-|. +.++++|.+|.+.+++.++.++...+ .++..|+
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F-~gL~slq 143 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF-GGLSSLQ 143 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh-hhHHHHH
Confidence 557888889988888544445788899999999988754333333 33578888888888777888876544 4456666
Q ss_pred eEecccCCCCcCCC-CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCccc------------ccCCC
Q 036119 542 CLAIRSCNSLVSFP-EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLAL------------LSRNG 608 (839)
Q Consensus 542 ~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~------------~~~~~ 608 (839)
.|.+..|...-... .+..++++..|.+.++ .++.++...+... .+++.+.+..++.+.. .+...
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l--~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGL--AAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccch--hccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 66665543221111 1233345555555554 2333433332222 2344444444331110 00000
Q ss_pred C----------------------ccccccee---EeccCCCchhhhh--hcCCCCcceeeecccccccCccccccCCCCC
Q 036119 609 N----------------------LPQSLKYL---KIEDCSKLESLAE--RLDNTSLEEISISVLENLKSLPADLHNLHHL 661 (839)
Q Consensus 609 ~----------------------~~~~L~~L---~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 661 (839)
. +..+++.+ ....|......|. .-..++|++|++++|+++..-+.+|..+..+
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 0 00011111 0111111111111 1123889999999999988888888899999
Q ss_pred CeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCc-----------------cCC
Q 036119 662 QKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVV-----------------SFP 724 (839)
Q Consensus 662 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~-----------------~~~ 724 (839)
++|.+..|++...-...+..+..|++|++++|++....|..|..+.+|.+|.+-.|+..- ..|
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~ 380 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP 380 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC
Confidence 999999987654444567778899999999998888788888999999999998876642 223
Q ss_pred CCCCCCCcceEEecCCCCCCc---ccccc--------CCCccccceEE-EecCCCCCcCCCC-CCcccceeeecCCCCCC
Q 036119 725 EDGFPTNLQSLDVHDLKISKP---LLEWG--------SNRFTSLRRFT-IWGGCPDLVSPPP-FPASLTNLWISDMPDLE 791 (839)
Q Consensus 725 ~~~~~~~L~~L~l~~~~~~~~---~~~~~--------~~~l~~L~~l~-l~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~ 791 (839)
..+.+..++.+.+++..+... .++.. -...+.+.+.. .+ -..+..+|. +|....+|++.+|.+ +
T Consensus 381 ~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcS--nk~lk~lp~~iP~d~telyl~gn~~-~ 457 (498)
T KOG4237|consen 381 RCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCS--NKLLKLLPRGIPVDVTELYLDGNAI-T 457 (498)
T ss_pred CCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhc--ccchhhcCCCCCchhHHHhcccchh-c
Confidence 446677888888887765421 11100 00000000000 00 011223333 677788899999855 5
Q ss_pred ccccCCCCCCccCeeeccCCCCccccCCCCCC--cccceeeecC
Q 036119 792 SISSIGENLTSLKTLRLSDCPKLKYFSEQGLP--KSLLQLHIYA 833 (839)
Q Consensus 792 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--~sL~~L~i~~ 833 (839)
.+|.. .+.+| .++++++ .+..+....++ +.|.+|-+++
T Consensus 458 ~vp~~--~~~~l-~~dls~n-~i~~Lsn~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 458 SVPDE--LLRSL-LLDLSNN-RISSLSNYTFSNMTQLSTLILSY 497 (498)
T ss_pred ccCHH--HHhhh-hcccccC-ceehhhcccccchhhhheeEEec
Confidence 56655 56778 8899987 66666554444 3455555543
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=4.7e-12 Score=143.69 Aligned_cols=227 Identities=24% Similarity=0.334 Sum_probs=120.4
Q ss_pred CcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccce
Q 036119 463 LPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLEC 542 (839)
Q Consensus 463 l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 542 (839)
+|++|+.|++++|.+ ..+|..+. ++|+.|++++|. ++.+|. ..+++|+.|++++|. +..+|..+. .+|+.
T Consensus 197 Ip~~L~~L~Ls~N~L-tsLP~~l~--~nL~~L~Ls~N~-LtsLP~-~l~~~L~~L~Ls~N~-L~~LP~~l~----s~L~~ 266 (754)
T PRK15370 197 IPEQITTLILDNNEL-KSLPENLQ--GNIKTLYANSNQ-LTSIPA-TLPDTIQEMELSINR-ITELPERLP----SALQS 266 (754)
T ss_pred cccCCcEEEecCCCC-CcCChhhc--cCCCEEECCCCc-cccCCh-hhhccccEEECcCCc-cCcCChhHh----CCCCE
Confidence 345666777766655 34554332 466666666653 344443 223456666666654 334443321 34555
Q ss_pred EecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccC
Q 036119 543 LAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDC 622 (839)
Q Consensus 543 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~ 622 (839)
|++++|. +..+|.. .+++|+.|++++| .+..+|. .++++|+.|++++|
T Consensus 267 L~Ls~N~-L~~LP~~-l~~sL~~L~Ls~N-~Lt~LP~-----------------------------~lp~sL~~L~Ls~N 314 (754)
T PRK15370 267 LDLFHNK-ISCLPEN-LPEELRYLSVYDN-SIRTLPA-----------------------------HLPSGITHLNVQSN 314 (754)
T ss_pred EECcCCc-cCccccc-cCCCCcEEECCCC-ccccCcc-----------------------------cchhhHHHHHhcCC
Confidence 5555432 2334321 2234555555554 2333322 12234555555554
Q ss_pred CCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccccccc
Q 036119 623 SKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNC 702 (839)
Q Consensus 623 ~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~ 702 (839)
... .+|... .++|+.|++++|.+.+ +|..+ .++|+.|++++|.+. .+|..+. ++|+.|++++|+ +..+|..
T Consensus 315 ~Lt-~LP~~l-~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~-Lt~LP~~ 385 (754)
T PRK15370 315 SLT-ALPETL-PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNA-LTNLPEN 385 (754)
T ss_pred ccc-cCCccc-cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCc-CCCCCHh
Confidence 322 222211 2456666666665543 44443 267778888777544 4555432 478888888775 3456655
Q ss_pred CcccccccccccccccCCccCCCC-----CCCCCcceEEecCCCCC
Q 036119 703 MHNLTSLLNLKISECPSVVSFPED-----GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 703 l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~ 743 (839)
+. ++|+.|++++|++. .+|.. ...+++..|++.+|++.
T Consensus 386 l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 386 LP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 43 36777888877765 44432 23466777888887765
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.19 E-value=7.7e-13 Score=114.83 Aligned_cols=164 Identities=18% Similarity=0.196 Sum_probs=100.5
Q ss_pred hhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccc
Q 036119 627 SLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNL 706 (839)
Q Consensus 627 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l 706 (839)
.++..+.....+.|.+++|+++. +|..+..+.+|+.|++++|++ +.+|..+..+++|+.|++.-| .+..+|.+|+.+
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmn-rl~~lprgfgs~ 101 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMN-RLNILPRGFGSF 101 (264)
T ss_pred hcccccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchh-hhhcCccccCCC
Confidence 33444444566666677776643 444666777777777777643 456666677777777777665 355677777777
Q ss_pred ccccccccccccCCc-cCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeee
Q 036119 707 TSLLNLKISECPSVV-SFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWI 784 (839)
Q Consensus 707 ~~L~~L~l~~~~~~~-~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l 784 (839)
|.|+.|++.+|...+ .+|.. ..++.|+.|++++|.+.-..++. .. +++|+.|.+
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dv--g~----------------------lt~lqil~l 157 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDV--GK----------------------LTNLQILSL 157 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhh--hh----------------------hcceeEEee
Confidence 777777777666543 33433 44566777777777654322221 22 234555555
Q ss_pred cCCCCCCccccCCCCCCccCeeeccCCCCccccCC
Q 036119 785 SDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSE 819 (839)
Q Consensus 785 ~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 819 (839)
.+|.. -++|..++.++.|++|.+.+| +++.+|+
T Consensus 158 rdndl-l~lpkeig~lt~lrelhiqgn-rl~vlpp 190 (264)
T KOG0617|consen 158 RDNDL-LSLPKEIGDLTRLRELHIQGN-RLTVLPP 190 (264)
T ss_pred ccCch-hhCcHHHHHHHHHHHHhcccc-eeeecCh
Confidence 55633 356667777777777777776 6666655
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.19 E-value=2.3e-13 Score=118.06 Aligned_cols=110 Identities=27% Similarity=0.382 Sum_probs=86.4
Q ss_pred HHHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC
Q 036119 286 LQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP 365 (839)
Q Consensus 286 ~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp 365 (839)
.+..+..+.+|++|++++|+ +.++|.+++.+++||+|+++-|.+ ..+|.+++. ++-|+.||+++|+--...+|
T Consensus 48 vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl-~~lprgfgs-----~p~levldltynnl~e~~lp 120 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRL-NILPRGFGS-----FPALEVLDLTYNNLNENSLP 120 (264)
T ss_pred cCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhh-hcCccccCC-----CchhhhhhccccccccccCC
Confidence 33447888999999999999 999999999999999999999887 778999888 99999999999754445677
Q ss_pred cCC---CCccEEeecccC--cccccCCCCCCccEEEeccccc
Q 036119 366 RRL---LLLETLDITSCD--QLLVTIQCLPALSELQIDGCKR 402 (839)
Q Consensus 366 ~~l---~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~ 402 (839)
..+ ..|+-|.+.+++ -+|..++++++|+.|.+..|..
T Consensus 121 gnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 121 GNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred cchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch
Confidence 643 345556676665 5677788888887777776653
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.12 E-value=4.6e-12 Score=133.98 Aligned_cols=58 Identities=22% Similarity=0.098 Sum_probs=36.2
Q ss_pred cccceeeecCCCCC----CccccCCCCCCccCeeeccCCCCccccCCC------CCC-cccceeeecCCC
Q 036119 777 ASLTNLWISDMPDL----ESISSIGENLTSLKTLRLSDCPKLKYFSEQ------GLP-KSLLQLHIYACP 835 (839)
Q Consensus 777 ~~L~~L~l~~~~~l----~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~------~~~-~sL~~L~i~~c~ 835 (839)
+.|+.|++++|... ..+...+..+++|+.+++++| .+..-+.. ..+ +.|+.|+|.+.|
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 57888888888654 123334455688999999988 44432211 112 467888887765
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.02 E-value=2.1e-11 Score=128.97 Aligned_cols=109 Identities=18% Similarity=0.101 Sum_probs=53.0
Q ss_pred CCcceeeeccccccc----CccccccCCCCCCeEEecCCCCCcc----cCCCCCCCCCcceEecccccccccccccC---
Q 036119 635 TSLEEISISVLENLK----SLPADLHNLHHLQKIWIFGCPNLES----FPEEGLPSTKLTELTIYDCENLKALPNCM--- 703 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~lp~~l--- 703 (839)
++|+.|++++|.+.+ .++..+..+++|++|++++|..... ++..+..+++|++|++++|+........+
T Consensus 165 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~ 244 (319)
T cd00116 165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA 244 (319)
T ss_pred CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHH
Confidence 455555555555442 1222333445666666666654321 22233445566666666665432111111
Q ss_pred --cccccccccccccccCCcc----CCC-CCCCCCcceEEecCCCCC
Q 036119 704 --HNLTSLLNLKISECPSVVS----FPE-DGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 704 --~~l~~L~~L~l~~~~~~~~----~~~-~~~~~~L~~L~l~~~~~~ 743 (839)
...+.|++|++++|.+... +.. ...+++|+++++++|.+.
T Consensus 245 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 245 LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 1235666666666655311 000 122356677777777665
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.74 E-value=5.8e-09 Score=120.77 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=25.0
Q ss_pred CcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhh
Q 036119 589 TLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLA 629 (839)
Q Consensus 589 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 629 (839)
++..+.+.+|........ ..++++|+.|.+..|..++.+.
T Consensus 748 ~l~~~~~~~~~~~r~l~~-~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 748 NLSKVSILNCHMLRDLTW-LLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred HHHHHHhhccccccccch-hhccCcccEEEEecccccccCC
Confidence 455555666665555443 3456778888888777766653
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=5.2e-09 Score=105.33 Aligned_cols=105 Identities=12% Similarity=-0.035 Sum_probs=43.6
Q ss_pred CCcceeeecccccccCcc--ccccCCCCCCeEEecCCCCCcc--cCCCCCCCCCcceEecccccccccccc-cCcccccc
Q 036119 635 TSLEEISISVLENLKSLP--ADLHNLHHLQKIWIFGCPNLES--FPEEGLPSTKLTELTIYDCENLKALPN-CMHNLTSL 709 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L 709 (839)
.+|+.+.|.++... .++ .....|++++.|++++|-...- +.....++|+|+.|+++.|....-... .-..++.|
T Consensus 121 kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 34555555544431 111 2334555555555555522211 112233445555555555543221111 11234455
Q ss_pred cccccccccCCccCC--CCCCCCCcceEEecCC
Q 036119 710 LNLKISECPSVVSFP--EDGFPTNLQSLDVHDL 740 (839)
Q Consensus 710 ~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~ 740 (839)
+.|.+++|.+...-- ....+|+|+.|++..|
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 555555554431000 0023455555555555
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.63 E-value=1.1e-09 Score=109.33 Aligned_cols=160 Identities=14% Similarity=0.213 Sum_probs=91.8
Q ss_pred CceEEEeccCCCCCcc--ccccCCCCCccEEeecCCCCCcccCC---CCCCCCccEEEeccCccccccchhhhhCCCCcc
Q 036119 466 RLQFLELSCCEGLTRL--PQALLTLSSLTEMRIHDCASLVSFPQ---AALPSQLRSVVIEECDALESLPEAWMQNSNSSL 540 (839)
Q Consensus 466 ~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~l~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 540 (839)
.|+.|.+++|.....- -.....+|++++|.+.+|..++...- ...+++|+.+.+..|..++.........++++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5677777776553322 22345788999999999876654321 235788999999998888877666666788999
Q ss_pred ceEecccCCCCcCCC---CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccC--CCCcccccc
Q 036119 541 ECLAIRSCNSLVSFP---EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSR--NGNLPQSLK 615 (839)
Q Consensus 541 ~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~L~ 615 (839)
+++.+++|+.+..-. -......++.+...+|...+.=.........+ -+.++++..|..++.... .......|+
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~-~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCL-EILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccCh-HhhccchhhhccccchHHHHHhhhhhHhh
Confidence 999999998765411 11223345555555665433111111121111 244445556655443321 111233456
Q ss_pred eeEeccCCCch
Q 036119 616 YLKIEDCSKLE 626 (839)
Q Consensus 616 ~L~l~~~~~l~ 626 (839)
.|..++|..+.
T Consensus 298 ~l~~s~~t~~~ 308 (483)
T KOG4341|consen 298 VLCYSSCTDIT 308 (483)
T ss_pred hhcccCCCCCc
Confidence 66666665543
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.2e-08 Score=102.68 Aligned_cols=35 Identities=29% Similarity=0.195 Sum_probs=20.9
Q ss_pred CcccceeeecCCCC--CCccccCCCCCCccCeeeccCC
Q 036119 776 PASLTNLWISDMPD--LESISSIGENLTSLKTLRLSDC 811 (839)
Q Consensus 776 ~~~L~~L~l~~~~~--l~~~~~~~~~l~~L~~L~l~~c 811 (839)
.++|+.|+++.|+. ..++- .+..+++|+.|.+..+
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~-~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLN-HLRTLENLKHLRITLN 336 (505)
T ss_pred cccceeeecccCccccccccc-hhhccchhhhhhcccc
Confidence 45788888888865 22222 2345667777776654
No 29
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.58 E-value=2.6e-07 Score=95.62 Aligned_cols=58 Identities=21% Similarity=0.269 Sum_probs=30.5
Q ss_pred CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCC-ccccCCCCCCcccceeeecCCCC
Q 036119 775 FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPK-LKYFSEQGLPKSLLQLHIYACPL 836 (839)
Q Consensus 775 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~-l~~l~~~~~~~sL~~L~i~~c~~ 836 (839)
+|++|+.|++++|.... +|..+- .+|+.|.++.+.. ...++...+|+++ .|++.+|-.
T Consensus 154 LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lk 212 (426)
T PRK15386 154 ISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVL 212 (426)
T ss_pred cCCcccEEEecCCCccc-Cccccc--ccCcEEEecccccccccCccccccccc-Eechhhhcc
Confidence 45667777777665442 232221 4666666665421 1134444566666 666666643
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.58 E-value=1.1e-09 Score=109.46 Aligned_cols=143 Identities=13% Similarity=0.192 Sum_probs=66.7
Q ss_pred cCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccc--cccCCCCCccEEeecCCCCCccc-
Q 036119 429 LPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLP--QALLTLSSLTEMRIHDCASLVSF- 505 (839)
Q Consensus 429 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~l- 505 (839)
+...++++++|.+.+|..++.... ..+...-++|+.|++..|...+... .-...+++|++|++++|+.+..-
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~-----~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSL-----LSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHH-----HHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 345667777777777765443221 1111111466666666655433221 12235677777777777555431
Q ss_pred --CCCCCCCCccEEEeccCccccccchhhhhCCCCccceEecccCCCCcCCCC---CCCCCCccEEEEcCCCCCcC
Q 036119 506 --PQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPE---VALPSQLRTIIIGGCHALES 576 (839)
Q Consensus 506 --~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~ 576 (839)
+...+...++.+...+|...+.-........++.+.++++..|..++.... -.....|+.+..++|..+.+
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d 309 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD 309 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch
Confidence 111223445555555554433222222223344455555555544433221 12233455555555554443
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=2.5e-08 Score=95.19 Aligned_cols=129 Identities=23% Similarity=0.192 Sum_probs=82.1
Q ss_pred cCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCCCCCcceE
Q 036119 656 HNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSL 735 (839)
Q Consensus 656 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 735 (839)
..+..|+++++++|.+. .+.+...-.|.++.|++++|.+.. + ..+..+++|..|++++|.......-...+.+.+.|
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 34567788888887543 455555556778888888875443 2 23677778888888877665433222556677777
Q ss_pred EecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCC--ccccCCCCCCccCeeeccCCCC
Q 036119 736 DVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLE--SISSIGENLTSLKTLRLSDCPK 813 (839)
Q Consensus 736 ~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~ 813 (839)
.+++|.+.. +++|..| =+|..||+++|.+-. .+ ..++++|+|+++.+.+||-
T Consensus 358 ~La~N~iE~---------LSGL~KL----------------YSLvnLDl~~N~Ie~ldeV-~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 358 KLAQNKIET---------LSGLRKL----------------YSLVNLDLSSNQIEELDEV-NHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ehhhhhHhh---------hhhhHhh----------------hhheeccccccchhhHHHh-cccccccHHHHHhhcCCCc
Confidence 777776532 2222222 257777777775422 22 2568899999999998864
No 32
>PLN03150 hypothetical protein; Provisional
Probab=98.40 E-value=3.4e-07 Score=104.16 Aligned_cols=108 Identities=20% Similarity=0.174 Sum_probs=90.2
Q ss_pred CcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccc
Q 036119 636 SLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKIS 715 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~ 715 (839)
.++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|+..+.+|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888888888888888899999999999998888888888888999999999998888889889999999999999
Q ss_pred cccCCccCCCC--CCCCCcceEEecCCCCC
Q 036119 716 ECPSVVSFPED--GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 716 ~~~~~~~~~~~--~~~~~L~~L~l~~~~~~ 743 (839)
+|.+...+|.. ..+.++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 99888788764 23356678888888654
No 33
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.40 E-value=1.2e-06 Score=90.88 Aligned_cols=133 Identities=27% Similarity=0.497 Sum_probs=79.1
Q ss_pred CCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccce
Q 036119 537 NSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKY 616 (839)
Q Consensus 537 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~ 616 (839)
+.++..|++++| .++.+| ..+++|+.|.+++|..+..+|.. +|.+|+.|.+.+|..+.. +|++|+.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~-----LP~nLe~L~Ls~Cs~L~s------LP~sLe~ 116 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPGS-----IPEGLEKLTVCHCPEISG------LPESVRS 116 (426)
T ss_pred hcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCCch-----hhhhhhheEccCcccccc------cccccce
Confidence 477889999988 677777 46678999999998888777753 346788888888876653 3456778
Q ss_pred eEeccCC--CchhhhhhcCCCCcceeeecccccc--cCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccc
Q 036119 617 LKIEDCS--KLESLAERLDNTSLEEISISVLENL--KSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYD 692 (839)
Q Consensus 617 L~l~~~~--~l~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 692 (839)
|++..+. .+..+| ++|+.|.+.+++.. ..+|.. -.++|++|++++|... ..|..+. .+|+.|.++.
T Consensus 117 L~L~~n~~~~L~~LP-----ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSATDSIKNVP-----NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred EEeCCCCCcccccCc-----chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 8776432 233333 24556655432211 111100 1245666666666543 2332222 3666666655
Q ss_pred c
Q 036119 693 C 693 (839)
Q Consensus 693 ~ 693 (839)
|
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 4
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.34 E-value=2.5e-07 Score=85.23 Aligned_cols=101 Identities=27% Similarity=0.479 Sum_probs=29.5
Q ss_pred CCCceeEEEeCCCccccccccccc-CcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC----c
Q 036119 292 HLPRLRVFSLCGYRNIFNLPNEIG-NLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP----R 366 (839)
Q Consensus 292 ~l~~L~~L~L~~~~~~~~lp~~i~-~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp----~ 366 (839)
+..++|.|+|++|. +..+. .++ .+.+|+.|++++|.+.. ++ ++.. +++|++|++++| .++ .++ .
T Consensus 17 n~~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~-----L~~L~~L~L~~N-~I~-~i~~~l~~ 85 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNNQITK-LE-GLPG-----LPRLKTLDLSNN-RIS-SISEGLDK 85 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T---------TT--EEE--SS-----S-CHHHHH
T ss_pred cccccccccccccc-ccccc-chhhhhcCCCEEECCCCCCcc-cc-CccC-----hhhhhhcccCCC-CCC-ccccchHH
Confidence 33455666666666 55553 344 35666666666666532 22 2222 666666666663 444 332 1
Q ss_pred CCCCccEEeecccC----cccccCCCCCCccEEEeccccce
Q 036119 367 RLLLLETLDITSCD----QLLVTIQCLPALSELQIDGCKRV 403 (839)
Q Consensus 367 ~l~~L~~L~l~~~~----~l~~~l~~l~~L~~L~l~~~~~~ 403 (839)
.+++|++|+++++. .-...+..+++|++|++.+|+..
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 35666666666554 12256678899999999998754
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.34 E-value=8.4e-07 Score=66.75 Aligned_cols=58 Identities=29% Similarity=0.509 Sum_probs=50.7
Q ss_pred CceeEEEeCCCccccccc-ccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCc
Q 036119 294 PRLRVFSLCGYRNIFNLP-NEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNC 357 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~ 357 (839)
++|++|++++|. +..+| ..|..+++|++|++++|.+...-|..+.. +++|++|++++|
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~-----l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSN-----LPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTT-----STTESEEEETSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcC-----CCCCCEEeCcCC
Confidence 579999999998 88888 57889999999999999997665666666 999999999997
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.6e-09 Score=99.59 Aligned_cols=181 Identities=18% Similarity=0.167 Sum_probs=115.9
Q ss_pred CCcceeeecccccccC-ccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccc--cccCcccccccc
Q 036119 635 TSLEEISISVLENLKS-LPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKAL--PNCMHNLTSLLN 711 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--p~~l~~l~~L~~ 711 (839)
+.|+.++++...++.. +-..+..+.+|+.|.+.++...+.+...+..-.+|+.|+++.|.-...- .-.+.+|+.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 5688888887666532 2223457888888888888777666666666678999999888655432 224577888888
Q ss_pred cccccccCCccCCCC---CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCC
Q 036119 712 LKISECPSVVSFPED---GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMP 788 (839)
Q Consensus 712 L~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 788 (839)
|+++.|......-.. ..-++|+.|+++|+.-.- +.. ++..| ..-.++|..||+|+|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-----~~s---h~~tL------------~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-----QKS---HLSTL------------VRRCPNLVHLDLSDSV 324 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-----hhh---HHHHH------------HHhCCceeeecccccc
Confidence 888888765443221 345678888888875320 000 11111 0112478889999887
Q ss_pred CCCc-cccCCCCCCccCeeeccCCCCccc--cCCCCCCcccceeeecCCC
Q 036119 789 DLES-ISSIGENLTSLKTLRLSDCPKLKY--FSEQGLPKSLLQLHIYACP 835 (839)
Q Consensus 789 ~l~~-~~~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~~sL~~L~i~~c~ 835 (839)
.++. ....+..|+.|++|.++.|-.+-. +-...-.|+|.+|++.||-
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 6654 222336789999999999954421 1011123699999999884
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.32 E-value=2.5e-08 Score=103.72 Aligned_cols=148 Identities=21% Similarity=0.211 Sum_probs=93.3
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKI 714 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 714 (839)
..|+.+.++.|.+ ..+|..+.++..|.+|+++.|++. .+|..+..+ -|+.|.+++| +++.+|+.++.++.|..|+.
T Consensus 98 ~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNN-kl~~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 98 VSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNN-KLTSLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecC-ccccCCcccccchhHHHhhh
Confidence 4556666666555 345666777777777777777543 455544443 3777777765 46667777777777777777
Q ss_pred ccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccc
Q 036119 715 SECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESIS 794 (839)
Q Consensus 715 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 794 (839)
+.|.+....+..+.+.+|+.|.+..|++..-.++. .. -.|..||+|.| ....+|
T Consensus 174 s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El-----~~--------------------LpLi~lDfScN-kis~iP 227 (722)
T KOG0532|consen 174 SKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEEL-----CS--------------------LPLIRLDFSCN-KISYLP 227 (722)
T ss_pred hhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHH-----hC--------------------CceeeeecccC-ceeecc
Confidence 77777654445566777777777777665432221 00 03666777666 445667
Q ss_pred cCCCCCCccCeeeccCCC
Q 036119 795 SIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 795 ~~~~~l~~L~~L~l~~c~ 812 (839)
..|.++..|++|.|.+||
T Consensus 228 v~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNP 245 (722)
T ss_pred hhhhhhhhheeeeeccCC
Confidence 677777777777777664
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.28 E-value=1.4e-07 Score=86.89 Aligned_cols=82 Identities=20% Similarity=0.139 Sum_probs=20.6
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCC-CCCCCcceEecccccccc--cccccCcccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEG-LPSTKLTELTIYDCENLK--ALPNCMHNLTSLLN 711 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~ 711 (839)
.+|+.|++++|.+... + ++..+++|++|++++|.+.. +...+ ..+++|++|.+++|++.. .+ ..+..+++|+.
T Consensus 42 ~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~ 117 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNEL-EPLSSLPKLRV 117 (175)
T ss_dssp TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCC-GGGGG-TT--E
T ss_pred cCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHh-HHHHcCCCcce
Confidence 3444444444444321 1 33344555555555554332 21111 123455555555443211 11 12334445555
Q ss_pred cccccccCC
Q 036119 712 LKISECPSV 720 (839)
Q Consensus 712 L~l~~~~~~ 720 (839)
|++.+||..
T Consensus 118 L~L~~NPv~ 126 (175)
T PF14580_consen 118 LSLEGNPVC 126 (175)
T ss_dssp EE-TT-GGG
T ss_pred eeccCCccc
Confidence 555555443
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.28 E-value=2.6e-08 Score=103.59 Aligned_cols=152 Identities=24% Similarity=0.329 Sum_probs=110.5
Q ss_pred HHHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC
Q 036119 286 LQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP 365 (839)
Q Consensus 286 ~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp 365 (839)
+|..++.+..|..|.|..|. +..+|..+++|..|.||||+.|++ ..+|..+.. --|+.|.+++| +++ .+|
T Consensus 90 lp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~------lpLkvli~sNN-kl~-~lp 159 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCD------LPLKVLIVSNN-KLT-SLP 159 (722)
T ss_pred CchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchh-hcCChhhhc------CcceeEEEecC-ccc-cCC
Confidence 34446666777888888888 888888888888888888888887 567776553 34788878874 665 677
Q ss_pred cC---CCCccEEeecccC--cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCcee
Q 036119 366 RR---LLLLETLDITSCD--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQ 440 (839)
Q Consensus 366 ~~---l~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~ 440 (839)
.. ...|..|+.+.|. .+|..++.+.+|+.|.+..|....++. .+.
T Consensus 160 ~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~------------------------El~------ 209 (722)
T KOG0532|consen 160 EEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPE------------------------ELC------ 209 (722)
T ss_pred cccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCH------------------------HHh------
Confidence 53 3456666777666 677888888888888888776433111 111
Q ss_pred cccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCC
Q 036119 441 ISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCAS 501 (839)
Q Consensus 441 l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 501 (839)
. -.|.+||++.|++ ..+|..|.+|..|++|-|.+|+.
T Consensus 210 ---------------------~--LpLi~lDfScNki-s~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 210 ---------------------S--LPLIRLDFSCNKI-SYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred ---------------------C--CceeeeecccCce-eecchhhhhhhhheeeeeccCCC
Confidence 1 1588999998887 68999999999999999988854
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.28 E-value=1.7e-07 Score=89.55 Aligned_cols=84 Identities=17% Similarity=0.130 Sum_probs=44.9
Q ss_pred CCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEe
Q 036119 465 CRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLA 544 (839)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 544 (839)
++|+.|++++|.. ..+-.|-.++-+.++|.+.+| .+.++.....+-+|..|++++|. ++.+...-..+.+|.|+.+.
T Consensus 329 ~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 329 PQLQLLDLSGNLL-AECVGWHLKLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred ccceEeecccchh-HhhhhhHhhhcCEeeeehhhh-hHhhhhhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHh
Confidence 3566666666654 344445555666666666665 34444444555666666666654 22222222224556666666
Q ss_pred cccCCCC
Q 036119 545 IRSCNSL 551 (839)
Q Consensus 545 l~~~~~l 551 (839)
+.+||.-
T Consensus 406 L~~NPl~ 412 (490)
T KOG1259|consen 406 LTGNPLA 412 (490)
T ss_pred hcCCCcc
Confidence 6665543
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.26 E-value=9.2e-07 Score=96.24 Aligned_cols=191 Identities=21% Similarity=0.206 Sum_probs=117.5
Q ss_pred eeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCC-CCCeEEecCCCCCcccCCCCCCCCCcceEeccccc
Q 036119 616 YLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLH-HLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCE 694 (839)
Q Consensus 616 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 694 (839)
.+....+............+.++.+++.++.+.. ++.....+. +|+.|++++|... .+|.....+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 4666665544444444445778888888887754 443444553 8888888888543 555556778888888888885
Q ss_pred ccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCC-cCC
Q 036119 695 NLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDL-VSP 772 (839)
Q Consensus 695 ~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~ 772 (839)
+..+|......++|+.|++++|.+. .+|.. ..+..|++|.+++|+...... ....+..+..+.+.++-... ...
T Consensus 175 -l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~--~~~~~~~l~~l~l~~n~~~~~~~~ 250 (394)
T COG4886 175 -LSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSNNKLEDLPES 250 (394)
T ss_pred -hhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecch--hhhhcccccccccCCceeeeccch
Confidence 5556665557888888888888775 45544 456668888888885433222 12344444444433321110 122
Q ss_pred CCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCc
Q 036119 773 PPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKL 814 (839)
Q Consensus 773 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l 814 (839)
...+++++.|++++|.. ..++. +..+.+++.|+++++...
T Consensus 251 ~~~l~~l~~L~~s~n~i-~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 251 IGNLSNLETLDLSNNQI-SSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hccccccceeccccccc-ccccc-ccccCccCEEeccCcccc
Confidence 22445677777777743 34443 566777777777776433
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.25 E-value=1e-06 Score=95.90 Aligned_cols=103 Identities=34% Similarity=0.477 Sum_probs=73.9
Q ss_pred hcCCCceeEEEeCCCcccccccccccCcC-cCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc--
Q 036119 290 LNHLPRLRVFSLCGYRNIFNLPNEIGNLK-HLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR-- 366 (839)
Q Consensus 290 ~~~l~~L~~L~L~~~~~~~~lp~~i~~L~-~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~-- 366 (839)
+..+..++.|++.++. +..+|...+.+. +|+.|++++|.+ ..+|..+.. +++|+.|++++| .+. .+|.
T Consensus 112 ~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~-----l~~L~~L~l~~N-~l~-~l~~~~ 182 (394)
T COG4886 112 LLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRN-----LPNLKNLDLSFN-DLS-DLPKLL 182 (394)
T ss_pred hhcccceeEEecCCcc-cccCccccccchhhcccccccccch-hhhhhhhhc-----cccccccccCCc-hhh-hhhhhh
Confidence 4455789999999998 889988888885 999999999988 445544455 899999999986 565 5654
Q ss_pred -CCCCccEEeecccC--cccccCCCCCCccEEEecccc
Q 036119 367 -RLLLLETLDITSCD--QLLVTIQCLPALSELQIDGCK 401 (839)
Q Consensus 367 -~l~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~ 401 (839)
...+|+.|+++++. .+|..++.+.+|++|.+.+|.
T Consensus 183 ~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 183 SNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 55666777776665 445544455556666666653
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.18 E-value=2e-06 Score=64.66 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=25.2
Q ss_pred CCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccccccc
Q 036119 660 HLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECP 718 (839)
Q Consensus 660 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 718 (839)
+|++|++++|.+....+..+..+++|++|++++|.....-|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444443332222233444455555555443332223344444444444444443
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.15 E-value=2e-06 Score=97.96 Aligned_cols=90 Identities=18% Similarity=0.134 Sum_probs=80.6
Q ss_pred CCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEec
Q 036119 660 HLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVH 738 (839)
Q Consensus 660 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~ 738 (839)
.++.|+|++|.....+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.+...+|.. +.+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999888888988888999999999999988899999999999999999999998888865 778999999999
Q ss_pred CCCCCCccccc
Q 036119 739 DLKISKPLLEW 749 (839)
Q Consensus 739 ~~~~~~~~~~~ 749 (839)
+|.+.+.+|..
T Consensus 499 ~N~l~g~iP~~ 509 (623)
T PLN03150 499 GNSLSGRVPAA 509 (623)
T ss_pred CCcccccCChH
Confidence 99999887764
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=1.3e-07 Score=90.47 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=32.6
Q ss_pred ceeEEEeCCCccccc--ccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccc
Q 036119 295 RLRVFSLCGYRNIFN--LPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQ 361 (839)
Q Consensus 295 ~L~~L~L~~~~~~~~--lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~ 361 (839)
.|++|||++.. ++. +-.-+..+.+|+.|.+.++.+.+.+...+.. -.+|+.|+++.|++++
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-----N~~L~~lnlsm~sG~t 248 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-----NSNLVRLNLSMCSGFT 248 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-----cccceeeccccccccc
Confidence 46666666654 221 2223345556666666666654444444443 5566666666665554
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=2e-05 Score=53.92 Aligned_cols=38 Identities=34% Similarity=0.513 Sum_probs=32.2
Q ss_pred CceeEEEeCCCcccccccccccCcCcCcEeEecCccccc
Q 036119 294 PRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEE 332 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~ 332 (839)
++|++|++++|+ +..+|..+++|++|++|++++|.+..
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCC
Confidence 478999999999 88999889999999999999999853
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.61 E-value=1.4e-05 Score=86.93 Aligned_cols=110 Identities=22% Similarity=0.258 Sum_probs=82.9
Q ss_pred HHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc-
Q 036119 288 MLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR- 366 (839)
Q Consensus 288 ~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~- 366 (839)
..+..+.+|.+|++.+|. +..+...+..+++|++|++++|.|....+ +..++.|+.|++.+| .+. .++.
T Consensus 89 ~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-------l~~l~~L~~L~l~~N-~i~-~~~~~ 158 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITKLEG-------LSTLTLLKELNLSGN-LIS-DISGL 158 (414)
T ss_pred cccccccceeeeeccccc-hhhcccchhhhhcchheeccccccccccc-------hhhccchhhheeccC-cch-hccCC
Confidence 347788999999999999 88887668889999999999999855432 223778999999996 555 4553
Q ss_pred -CCCCccEEeecccCccccc---CCCCCCccEEEeccccceeecC
Q 036119 367 -RLLLLETLDITSCDQLLVT---IQCLPALSELQIDGCKRVVFSS 407 (839)
Q Consensus 367 -~l~~L~~L~l~~~~~l~~~---l~~l~~L~~L~l~~~~~~~~~~ 407 (839)
.+.+|+.+++.++...... +..+.+++.+.+.+|....+..
T Consensus 159 ~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~ 203 (414)
T KOG0531|consen 159 ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG 203 (414)
T ss_pred ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc
Confidence 4778888888888733322 4788888888888887655433
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.60 E-value=4.7e-06 Score=82.17 Aligned_cols=180 Identities=15% Similarity=0.021 Sum_probs=91.8
Q ss_pred ccceeEeccCCCchh----hhhhc-CCCCcceeeecccccccCcc-------------ccccCCCCCCeEEecCCCCCcc
Q 036119 613 SLKYLKIEDCSKLES----LAERL-DNTSLEEISISVLENLKSLP-------------ADLHNLHHLQKIWIFGCPNLES 674 (839)
Q Consensus 613 ~L~~L~l~~~~~l~~----~~~~~-~~~~L~~L~l~~~~~~~~~~-------------~~~~~l~~L~~L~l~~~~~~~~ 674 (839)
.|+.|++++|-.-.. +.+.+ +.++|++|.+.+|.+-...- .-...-+.|+.+..+.|... .
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n 171 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-N 171 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-c
Confidence 577777777642221 11111 23667777777765532111 11234556666666666432 2
Q ss_pred cC-----CCCCCCCCcceEecccccccc----cccccCcccccccccccccccCCccCCCC-----CCCCCcceEEecCC
Q 036119 675 FP-----EEGLPSTKLTELTIYDCENLK----ALPNCMHNLTSLLNLKISECPSVVSFPED-----GFPTNLQSLDVHDL 740 (839)
Q Consensus 675 ~~-----~~~~~~~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~L~~L~l~~~ 740 (839)
.+ ..+...+.|+.+.++.|.+.. .+...+..++.|+.|+|.+|-+....... ..+++|++|++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 21 223344566666666664321 22334566667777777766554322110 23456666777666
Q ss_pred CCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCc----cccCCCCCCccCeeeccCC
Q 036119 741 KISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLES----ISSIGENLTSLKTLRLSDC 811 (839)
Q Consensus 741 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~~~~l~~L~~L~l~~c 811 (839)
.+.........+ .+....++|++|.+.+|..... +...+...+.|..|+|++|
T Consensus 252 ll~~~Ga~a~~~------------------al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 252 LLENEGAIAFVD------------------ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ccccccHHHHHH------------------HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 655221100000 0111234677777777765442 2333455788888888888
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.54 E-value=1.6e-05 Score=78.48 Aligned_cols=117 Identities=16% Similarity=0.091 Sum_probs=78.2
Q ss_pred HHHHHHHhcCCCceeEEEeCCCccccccc----ccccCcCcCcEeEecCccccccccCCC---------CCCccccCCCc
Q 036119 283 WSVLQMLLNHLPRLRVFSLCGYRNIFNLP----NEIGNLKHLRCLNLSRTKWEEWIPCGA---------GQEVDEVFPKL 349 (839)
Q Consensus 283 ~~~~~~~~~~l~~L~~L~L~~~~~~~~lp----~~i~~L~~L~~L~L~~~~~~~~~p~~~---------~~~~~~~l~~L 349 (839)
...+...+...++|++|+||.|-+-..-+ +-+.+...|++|.|.+|.+ +..-.+. .......-++|
T Consensus 81 L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~L 159 (382)
T KOG1909|consen 81 LKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKL 159 (382)
T ss_pred HHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcce
Confidence 34456667788899999999998433333 3456678999999999986 2211111 11223346789
Q ss_pred cEEeccCccccccCCC--------cCCCCccEEeecccCccc-------ccCCCCCCccEEEeccccc
Q 036119 350 RTLSLDNCCKLQGTLP--------RRLLLLETLDITSCDQLL-------VTIQCLPALSELQIDGCKR 402 (839)
Q Consensus 350 ~~L~L~~~~~l~~~lp--------~~l~~L~~L~l~~~~~l~-------~~l~~l~~L~~L~l~~~~~ 402 (839)
+++....| .+. .-+ ...+.|+.+.+..+.-.+ ..+..+++|++|++..|..
T Consensus 160 rv~i~~rN-rle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 160 RVFICGRN-RLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred EEEEeecc-ccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh
Confidence 99988875 443 333 245688888888776333 4567899999999998853
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=3.2e-05 Score=74.49 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=24.3
Q ss_pred cCCCceeEEEeCCCccccc---ccccccCcCcCcEeEecCccc
Q 036119 291 NHLPRLRVFSLCGYRNIFN---LPNEIGNLKHLRCLNLSRTKW 330 (839)
Q Consensus 291 ~~l~~L~~L~L~~~~~~~~---lp~~i~~L~~L~~L~L~~~~~ 330 (839)
...+.++.|||.+|. +.. +-.-+.+|++|++|+++.|.+
T Consensus 68 ~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L 109 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSL 109 (418)
T ss_pred HHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcC
Confidence 345667777777776 443 223345677777777777765
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.41 E-value=3.2e-05 Score=84.28 Aligned_cols=32 Identities=34% Similarity=0.289 Sum_probs=14.8
Q ss_pred cceeeecCCCCCCccccCCCCCCccCeeeccCC
Q 036119 779 LTNLWISDMPDLESISSIGENLTSLKTLRLSDC 811 (839)
Q Consensus 779 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 811 (839)
|+.+++++|+.... +..+..+..+..|++.++
T Consensus 234 L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 234 LRELYLSGNRISRS-PEGLENLKNLPVLDLSSN 265 (414)
T ss_pred HHHHhcccCccccc-cccccccccccccchhhc
Confidence 55555555544322 123334455555555544
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.37 E-value=9.9e-06 Score=87.27 Aligned_cols=103 Identities=26% Similarity=0.204 Sum_probs=55.3
Q ss_pred CCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCC-CCCCcccceeeecCCCCCCccccCCCCCCccCee
Q 036119 728 FPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSP-PPFPASLTNLWISDMPDLESISSIGENLTSLKTL 806 (839)
Q Consensus 728 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 806 (839)
.++.|+.|++++|++.... ...+++.|++|+++.||.....- ...-..|+.|.+++|...+ +- .+.++.+|+.|
T Consensus 185 ll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t-L~-gie~LksL~~L 259 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT-LR-GIENLKSLYGL 259 (1096)
T ss_pred HHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhhhheeeeecccHHHh-hh-hHHhhhhhhcc
Confidence 3445555555555544322 23445555555555444332211 1111258888888886543 22 45678888888
Q ss_pred eccCCCCccccCC---CCCCcccceeeecCCCC
Q 036119 807 RLSDCPKLKYFSE---QGLPKSLLQLHIYACPL 836 (839)
Q Consensus 807 ~l~~c~~l~~l~~---~~~~~sL~~L~i~~c~~ 836 (839)
+++.| -|....+ .....+|+.|++.|+|.
T Consensus 260 DlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 260 DLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred chhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 88877 4444332 12224678888888763
No 53
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.20 E-value=0.0014 Score=79.99 Aligned_cols=193 Identities=17% Similarity=0.211 Sum_probs=106.8
Q ss_pred CCcEEEEEeccCCCChhhHhhhhccc-CCCCCCCEEEEEecChHHH--HHhC-CCCeEeCC----CCCcccccCcCC---
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPF-GAGAAGSKIVVTTRNLVVA--ERMG-ADPVYQLK----ELSDDDCLDFTR--- 76 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~-~~~~~gs~iivTtr~~~v~--~~~~-~~~~~~~~----~l~~~~~~~~~~--- 76 (839)
+++++|||||+-..+.....+....+ +...++-++|||||...-. .... .....++. .++.+|+..++.
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~ 199 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL 199 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc
Confidence 67899999999322212223233332 3335567888999984211 1111 12345555 889899875442
Q ss_pred -CchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCC-hhHHHHHHhc-cccccC---CCCCcchhc--hhhhhhhhccCCC
Q 036119 77 -HQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDD-PRDWEFVLKT-DIWNLR---DSDILPALR--LKQCFAYSSLFPK 148 (839)
Q Consensus 77 -~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~-~~~w~~~~~~-~~~~~~---~~~~~~~l~--~k~~f~~~a~f~~ 148 (839)
.+--.+.+.++.+.|+|+|+++..++..+.+... .......+.. ....+. ...++..+. .+..+...|+++
T Consensus 200 ~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~- 278 (903)
T PRK04841 200 SSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR- 278 (903)
T ss_pred CCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-
Confidence 2234567789999999999999999877754421 1100000000 000000 001112222 566667777765
Q ss_pred CcccChhHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHhcccccc-ccCCCcceeecHHHHHHHHHHc
Q 036119 149 DYEFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQ-SSYDASRFVMHDLINDLARWAA 217 (839)
Q Consensus 149 ~~~~~~~~li~~w~~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~-~~~~~~~~~mHdlv~~la~~i~ 217 (839)
.++. .+... +... +.+...+.+|.+.+++.. .+.+...|++|++++++.....
T Consensus 279 --~~~~-~l~~~-----l~~~--------~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 279 --SMND-ALIVR-----VTGE--------ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred --cCCH-HHHHH-----HcCC--------CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 2332 22221 1111 123567899999998753 3323457899999999998664
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.00068 Score=65.66 Aligned_cols=83 Identities=16% Similarity=0.139 Sum_probs=42.8
Q ss_pred CCcceeeeccccccc--CccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccc-ccccccCcccccccc
Q 036119 635 TSLEEISISVLENLK--SLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENL-KALPNCMHNLTSLLN 711 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~lp~~l~~l~~L~~ 711 (839)
+.++.+++.+|.+.. .+..-+.++|.|+.|+++.|+....+...-.+..+|++|-+.+.... +..-..+..+|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 455666666666543 22223446777777777776654333222234556676666554321 112223445555566
Q ss_pred cccccc
Q 036119 712 LKISEC 717 (839)
Q Consensus 712 L~l~~~ 717 (839)
|.++.|
T Consensus 151 lHmS~N 156 (418)
T KOG2982|consen 151 LHMSDN 156 (418)
T ss_pred hhhccc
Confidence 655555
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.05 E-value=0.0008 Score=61.60 Aligned_cols=104 Identities=15% Similarity=0.091 Sum_probs=69.0
Q ss_pred CcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccc--cccccccCcccccccccc
Q 036119 636 SLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCEN--LKALPNCMHNLTSLLNLK 713 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--l~~lp~~l~~l~~L~~L~ 713 (839)
+...+++++|.+.... .+..++.|.+|.+.+|.++..-|....-+++|..|.+.+|.+ ++.+ +.+..||.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceee
Confidence 4455666666553221 455788888888888877766665445567888888888754 2333 2367788888888
Q ss_pred cccccCCccCCCC----CCCCCcceEEecCCCC
Q 036119 714 ISECPSVVSFPED----GFPTNLQSLDVHDLKI 742 (839)
Q Consensus 714 l~~~~~~~~~~~~----~~~~~L~~L~l~~~~~ 742 (839)
+-+|+....--+. ..+|+|++||..+-..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 8888876443322 4578888888766543
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.96 E-value=0.00072 Score=46.27 Aligned_cols=40 Identities=28% Similarity=0.260 Sum_probs=32.2
Q ss_pred ccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCC
Q 036119 778 SLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSE 819 (839)
Q Consensus 778 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 819 (839)
+|++|++++|... .+|..++++++|+.|++++| .+++++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 6899999999654 67767899999999999999 6777654
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.86 E-value=5.3e-05 Score=81.87 Aligned_cols=114 Identities=22% Similarity=0.155 Sum_probs=77.0
Q ss_pred chhhhhhcCC-CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccC
Q 036119 625 LESLAERLDN-TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCM 703 (839)
Q Consensus 625 l~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l 703 (839)
+..+...+.. +.++.|+|++|++...- .+..++.|++|+|++|. +..+|.....--.|+.|.+++|. +.++ .++
T Consensus 176 L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~-l~tL-~gi 250 (1096)
T KOG1859|consen 176 LVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNA-LTTL-RGI 250 (1096)
T ss_pred HHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhhhheeeeecccH-HHhh-hhH
Confidence 3334444443 67788888888876543 66788899999999884 44566533322358899998875 4444 367
Q ss_pred cccccccccccccccCCccCC--CCCCCCCcceEEecCCCCC
Q 036119 704 HNLTSLLNLKISECPSVVSFP--EDGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 704 ~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~ 743 (839)
.+|.+|+.|++++|-+...-. ....+.+|+.|.+.||++-
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888999999999886653221 1145678888888888875
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.83 E-value=0.00056 Score=77.95 Aligned_cols=109 Identities=24% Similarity=0.254 Sum_probs=73.7
Q ss_pred ccccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCC
Q 036119 260 CDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAG 339 (839)
Q Consensus 260 ~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~ 339 (839)
.-++.||+|.+.+.. +..+.+.....++++|+.||+|+++ +..+ ..+++|++|+.|.+.+-.+.. -++ +
T Consensus 145 ~~LPsL~sL~i~~~~------~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~mrnLe~e~-~~~-l- 213 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQ------FDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQVLSMRNLEFES-YQD-L- 213 (699)
T ss_pred hhCcccceEEecCce------ecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHHHhccCCCCCc-hhh-H-
Confidence 457888888655432 1122255678899999999999999 8888 789999999999998876532 110 0
Q ss_pred CCccccCCCccEEeccCccccccC-C-------CcCCCCccEEeecccC
Q 036119 340 QEVDEVFPKLRTLSLDNCCKLQGT-L-------PRRLLLLETLDITSCD 380 (839)
Q Consensus 340 ~~~~~~l~~L~~L~L~~~~~l~~~-l-------p~~l~~L~~L~l~~~~ 380 (839)
...-.|++|++||+|.-....+. + ...+++|+.||.++.+
T Consensus 214 -~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 214 -IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred -HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 01223999999999975333211 1 1246677777777665
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.75 E-value=8.3e-05 Score=83.73 Aligned_cols=39 Identities=26% Similarity=0.238 Sum_probs=21.2
Q ss_pred cceeeecCCCCCCccccC-C-CCCCccCeeeccCCCCcccc
Q 036119 779 LTNLWISDMPDLESISSI-G-ENLTSLKTLRLSDCPKLKYF 817 (839)
Q Consensus 779 L~~L~l~~~~~l~~~~~~-~-~~l~~L~~L~l~~c~~l~~l 817 (839)
++.|+++.|...+.---. . ..+.+++.+++.+|+.+..-
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 677777777654322100 0 11556677777777665443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.62 E-value=0.0029 Score=58.04 Aligned_cols=99 Identities=25% Similarity=0.298 Sum_probs=66.0
Q ss_pred CceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC-----cCC
Q 036119 294 PRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP-----RRL 368 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp-----~~l 368 (839)
.+...+||++|. +..++. |..++.|.+|.+.+|.|+..-|.- ...+++|+.|.+.+| ++. .+- ..+
T Consensus 42 d~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNrIt~I~p~L-----~~~~p~l~~L~LtnN-si~-~l~dl~pLa~~ 112 (233)
T KOG1644|consen 42 DQFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNRITRIDPDL-----DTFLPNLKTLILTNN-SIQ-ELGDLDPLASC 112 (233)
T ss_pred cccceecccccc-hhhccc-CCCccccceEEecCCcceeeccch-----hhhccccceEEecCc-chh-hhhhcchhccC
Confidence 356678888887 777653 677888888888888886544432 223778888888885 443 222 256
Q ss_pred CCccEEeecccCcc------cccCCCCCCccEEEecccc
Q 036119 369 LLLETLDITSCDQL------LVTIQCLPALSELQIDGCK 401 (839)
Q Consensus 369 ~~L~~L~l~~~~~l------~~~l~~l~~L~~L~l~~~~ 401 (839)
++|++|.+.++..- ...+..+|+|++|++.+..
T Consensus 113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 77788877776511 1356778888888887653
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.50 E-value=0.0011 Score=75.62 Aligned_cols=107 Identities=20% Similarity=0.144 Sum_probs=68.5
Q ss_pred CCcceeeecccccccCc-cccc-cCCCCCCeEEecCCCCCc-ccCCCCCCCCCcceEecccccccccccccCcccccccc
Q 036119 635 TSLEEISISVLENLKSL-PADL-HNLHHLQKIWIFGCPNLE-SFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLN 711 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~-~~~~-~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~ 711 (839)
.+|++|++++......- |..+ .-||+|+.|.+++-.... .+.....++|+|..||+|+++. +.+ .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCc-HHHhccccHHH
Confidence 55666666654332211 1112 368888888888754432 2344556778899999998854 334 67888999998
Q ss_pred cccccccCCcc--CCCCCCCCCcceEEecCCCCC
Q 036119 712 LKISECPSVVS--FPEDGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 712 L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~ 743 (839)
|.+.+-.+... +-....+++|++||+|.-...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 88887655431 112256888999999877654
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.29 E-value=0.00056 Score=76.97 Aligned_cols=64 Identities=22% Similarity=0.416 Sum_probs=30.8
Q ss_pred CCCccEEEeccCccccccchhhhhCCCCccceEecccCCCCcCCC---CCCCCCCccEEEEcCCCCC
Q 036119 511 PSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFP---EVALPSQLRTIIIGGCHAL 574 (839)
Q Consensus 511 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l 574 (839)
+++|+.|+++.+..+...........+++|+.|.+.+|..++.-. .....++|++|++++|..+
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 455555555555544444333333445666666655555422111 1123345666666655544
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.15 E-value=0.00041 Score=59.14 Aligned_cols=105 Identities=17% Similarity=0.087 Sum_probs=70.0
Q ss_pred cceeEeccCCCchh--h-hhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEec
Q 036119 614 LKYLKIEDCSKLES--L-AERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTI 690 (839)
Q Consensus 614 L~~L~l~~~~~l~~--~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 690 (839)
+..+++++|+.... . ........|+..++++|.+....+.....++.++.|++.+|. +..+|.++..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhccc
Confidence 55667777764421 1 222334677778888887755444444567788888888874 4467777778888888888
Q ss_pred ccccccccccccCcccccccccccccccCC
Q 036119 691 YDCENLKALPNCMHNLTSLLNLKISECPSV 720 (839)
Q Consensus 691 ~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 720 (839)
+.|+... .|..+..+.+|-.|+..+|...
T Consensus 108 ~~N~l~~-~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFNPLNA-EPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccCcccc-chHHHHHHHhHHHhcCCCCccc
Confidence 8886544 4555666777777777777654
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.07 E-value=0.0025 Score=61.20 Aligned_cols=85 Identities=16% Similarity=0.120 Sum_probs=48.7
Q ss_pred ccCCCCCCeEEecCC--CCCcccCCCCCCCCCcceEeccccccc--ccccccCcccccccccccccccCCccCCCC----
Q 036119 655 LHNLHHLQKIWIFGC--PNLESFPEEGLPSTKLTELTIYDCENL--KALPNCMHNLTSLLNLKISECPSVVSFPED---- 726 (839)
Q Consensus 655 ~~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~---- 726 (839)
+-.+|+|++|.++.| .....++.....+|+|+++++++|++- .+++ .+..+.+|..|++.+|.-...--+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHHH
Confidence 335677777777777 444444444444577777777777542 2332 2456667777777777665411111
Q ss_pred CCCCCcceEEecCC
Q 036119 727 GFPTNLQSLDVHDL 740 (839)
Q Consensus 727 ~~~~~L~~L~l~~~ 740 (839)
..+++|+.|+-...
T Consensus 140 ~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDV 153 (260)
T ss_pred HHhhhhcccccccc
Confidence 34566666664443
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.76 E-value=0.0059 Score=34.54 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=12.2
Q ss_pred ceeEEEeCCCcccccccccccC
Q 036119 295 RLRVFSLCGYRNIFNLPNEIGN 316 (839)
Q Consensus 295 ~L~~L~L~~~~~~~~lp~~i~~ 316 (839)
+|++|++++|. ++.+|.+|++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 35666666665 5566655543
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.93 E-value=0.004 Score=59.67 Aligned_cols=82 Identities=16% Similarity=0.079 Sum_probs=41.9
Q ss_pred CCcceEEecCCCCC-Cccccc--cCCCccccceEEEecCCCCCcCCCC-------CCcccceeeecCCCCCCc----ccc
Q 036119 730 TNLQSLDVHDLKIS-KPLLEW--GSNRFTSLRRFTIWGGCPDLVSPPP-------FPASLTNLWISDMPDLES----ISS 795 (839)
Q Consensus 730 ~~L~~L~l~~~~~~-~~~~~~--~~~~l~~L~~l~l~~~~~~~~~~~~-------~~~~L~~L~l~~~~~l~~----~~~ 795 (839)
|.|++.....|++- ++...| .+..-.+|+.+.+..|......+.. -..+|+.||+.+|..... +..
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 55666666666654 211111 2222245566655554333322111 245788888888765432 111
Q ss_pred CCCCCCccCeeeccCC
Q 036119 796 IGENLTSLKTLRLSDC 811 (839)
Q Consensus 796 ~~~~l~~L~~L~l~~c 811 (839)
.+...+.|++|.+..|
T Consensus 237 al~~W~~lrEL~lnDC 252 (388)
T COG5238 237 ALCEWNLLRELRLNDC 252 (388)
T ss_pred Hhcccchhhhccccch
Confidence 2244566788888887
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.87 E-value=0.016 Score=55.84 Aligned_cols=87 Identities=16% Similarity=0.096 Sum_probs=63.4
Q ss_pred cCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccc--cccccccccCcccccccccccccccCC--ccCCCCCCCCC
Q 036119 656 HNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDC--ENLKALPNCMHNLTSLLNLKISECPSV--VSFPEDGFPTN 731 (839)
Q Consensus 656 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~lp~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~~~ 731 (839)
..+..|+.|.+.++..+.. . .+..+++|++|.++.| .....++.-...+|+|+++++++|++. ..++....+.+
T Consensus 40 d~~~~le~ls~~n~gltt~-~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-T-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec-c-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3566777777777654422 1 2344679999999999 556666666677899999999999874 33444467788
Q ss_pred cceEEecCCCCCC
Q 036119 732 LQSLDVHDLKISK 744 (839)
Q Consensus 732 L~~L~l~~~~~~~ 744 (839)
|.+|++.+|..+.
T Consensus 118 L~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcccCCccc
Confidence 9999999998774
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.86 E-value=0.0021 Score=61.48 Aligned_cols=41 Identities=12% Similarity=0.055 Sum_probs=22.6
Q ss_pred CcccceeeecCCCCCCc------cccCC-CCCCccCeeeccCCCCcccc
Q 036119 776 PASLTNLWISDMPDLES------ISSIG-ENLTSLKTLRLSDCPKLKYF 817 (839)
Q Consensus 776 ~~~L~~L~l~~~~~l~~------~~~~~-~~l~~L~~L~l~~c~~l~~l 817 (839)
.++|+.|...+|..-.. ++... .++|-|..|.+.+| .++..
T Consensus 271 ~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN-r~~E~ 318 (388)
T COG5238 271 VPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN-RIKEL 318 (388)
T ss_pred CCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC-cchhH
Confidence 34666666666654332 22222 55677777777776 44443
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.45 E-value=0.0021 Score=54.90 Aligned_cols=106 Identities=17% Similarity=0.127 Sum_probs=71.1
Q ss_pred Ccceeeecccccc--cCccccccCCCCCCeEEecCCCCCcccCCCCC-CCCCcceEecccccccccccccCccccccccc
Q 036119 636 SLEEISISVLENL--KSLPADLHNLHHLQKIWIFGCPNLESFPEEGL-PSTKLTELTIYDCENLKALPNCMHNLTSLLNL 712 (839)
Q Consensus 636 ~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L 712 (839)
.+..++|+.|++. ...+..+.....|+..++++|. ...+|+.+. .++.++.|++++|. +..+|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhc
Confidence 3456777777653 1222234456677888999885 445665443 35688899998874 66688889999999999
Q ss_pred ccccccCCccCCCCCCCCCcceEEecCCCCC
Q 036119 713 KISECPSVVSFPEDGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 743 (839)
+++.|++.........+.+|-.|+.-+|...
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence 9999988643332234566667777666554
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.75 E-value=0.0046 Score=59.53 Aligned_cols=97 Identities=19% Similarity=0.125 Sum_probs=58.3
Q ss_pred ccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCC--CCCCCCCcceEec
Q 036119 613 SLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPE--EGLPSTKLTELTI 690 (839)
Q Consensus 613 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l 690 (839)
+.+.|+..+|. +.++......+.|+.|.|+-|++..-. .+..+++|++|+|..|.+. ++.+ -+.++|+|+.|.|
T Consensus 20 ~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhh
Confidence 45666666663 333433344577777777777765433 3456778888888777443 2222 2456677888888
Q ss_pred ccccccccccc-----cCcccccccccc
Q 036119 691 YDCENLKALPN-----CMHNLTSLLNLK 713 (839)
Q Consensus 691 ~~~~~l~~lp~-----~l~~l~~L~~L~ 713 (839)
..|+-.+.-+. .+.-||+|++|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 77776554432 234466666664
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.66 E-value=0.05 Score=30.72 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=13.1
Q ss_pred cCcEeEecCccccccccCCCC
Q 036119 319 HLRCLNLSRTKWEEWIPCGAG 339 (839)
Q Consensus 319 ~L~~L~L~~~~~~~~~p~~~~ 339 (839)
+|++||+++|.+. .+|.++.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 4677777777775 5666543
No 72
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.28 E-value=0.84 Score=46.48 Aligned_cols=98 Identities=19% Similarity=0.174 Sum_probs=63.2
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccC---CCCCCCEEEEEecChHHHHHhC----------CCCeEeCCCCCcccccC
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFG---AGAAGSKIVVTTRNLVVAERMG----------ADPVYQLKELSDDDCLD 73 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~---~~~~gs~iivTtr~~~v~~~~~----------~~~~~~~~~l~~~~~~~ 73 (839)
.+++++||+||+|.-+...++.+..-.. ..+....|++|... ....... ....+++++++.+|...
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 6788999999998866566666543221 12233345565543 2222221 23468899999999763
Q ss_pred cC----------CCchH-HHHHHHHHHHhCCChHHHHHHHHHh
Q 036119 74 FT----------RHQSL-KEVGEQIVIKCGGLPLAAKTLGGLL 105 (839)
Q Consensus 74 ~~----------~~~~~-~~~~~~i~~~c~glPlal~~~g~~L 105 (839)
+. ....+ .+....|++.++|.|..+..++..+
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 21 11233 4788889999999999998888665
No 73
>PF05729 NACHT: NACHT domain
Probab=93.08 E-value=0.12 Score=48.17 Aligned_cols=65 Identities=25% Similarity=0.362 Sum_probs=43.2
Q ss_pred CCCcEEEEEeccCCCCh---h----hHhhhhcccCC--CCCCCEEEEEecChHH---HHHhCCCCeEeCCCCCcccc
Q 036119 7 FGKKFLLVLDDVWNENY---S----RWSELSCPFGA--GAAGSKIVVTTRNLVV---AERMGADPVYQLKELSDDDC 71 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~---~----~~~~l~~~~~~--~~~gs~iivTtr~~~v---~~~~~~~~~~~~~~l~~~~~ 71 (839)
+.+++++|+|++.+-.. . .+..+...+-. ..++.+||||+|.... .........++++++++++.
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 57899999999943221 0 12233322222 3578999999999877 33344446899999998886
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.56 E-value=0.083 Score=27.57 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=6.7
Q ss_pred ceeEEEeCCCccccccc
Q 036119 295 RLRVFSLCGYRNIFNLP 311 (839)
Q Consensus 295 ~L~~L~L~~~~~~~~lp 311 (839)
+|+.|++++|+ +.++|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45566666665 44444
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.04 E-value=0.039 Score=51.00 Aligned_cols=84 Identities=18% Similarity=0.331 Sum_probs=54.5
Q ss_pred cceeeecccccccCccccccCCCCCCeEEecCCCCCcccC--CCCCCCCCcceEecccccccccc-cccCcccccccccc
Q 036119 637 LEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFP--EEGLPSTKLTELTIYDCENLKAL-PNCMHNLTSLLNLK 713 (839)
Q Consensus 637 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~ 713 (839)
++.++-++..+...--..+..+++++.|.+.+|...+... ......++|+.|+|++|+.+++- -.++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 3444444444443333456678888888888887665432 12224579999999999876543 23567788888888
Q ss_pred cccccCC
Q 036119 714 ISECPSV 720 (839)
Q Consensus 714 l~~~~~~ 720 (839)
+.+-+..
T Consensus 183 l~~l~~v 189 (221)
T KOG3864|consen 183 LYDLPYV 189 (221)
T ss_pred hcCchhh
Confidence 8875554
No 76
>PF13173 AAA_14: AAA domain
Probab=90.74 E-value=0.32 Score=42.89 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=47.1
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHHHhCC------CCeEeCCCCCcccc
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGA------DPVYQLKELSDDDC 71 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~------~~~~~~~~l~~~~~ 71 (839)
..++.+|++|+| ....+|...+..+-+.++..+||+|+.+......-.. ...++|.+|+-.|.
T Consensus 59 ~~~~~~i~iDEi--q~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEI--QYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehh--hhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 347789999999 5456888888877766678999999999888744211 13688888887663
No 77
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.94 E-value=0.021 Score=55.14 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=48.3
Q ss_pred CceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEec
Q 036119 466 RLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAI 545 (839)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 545 (839)
+.+.|+..+|.+ .++. ....++.|+.|.|+-| .++++.+...+.+|++|++..|. +..+.+.+...++|+|+.|-|
T Consensus 20 ~vkKLNcwg~~L-~DIs-ic~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGL-DDIS-ICEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCc-cHHH-HHHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 455566666655 2222 2456677777777665 44455555556677777776654 444444444456677777766
Q ss_pred ccCCCCcC
Q 036119 546 RSCNSLVS 553 (839)
Q Consensus 546 ~~~~~l~~ 553 (839)
..||-...
T Consensus 96 ~ENPCc~~ 103 (388)
T KOG2123|consen 96 DENPCCGE 103 (388)
T ss_pred ccCCcccc
Confidence 66665443
No 78
>PRK06893 DNA replication initiation factor; Validated
Probab=89.92 E-value=0.28 Score=48.37 Aligned_cols=63 Identities=22% Similarity=0.343 Sum_probs=41.1
Q ss_pred EEEEEeccCCCC-hhhHhh-hhcccCCC-CCCCEEEEEecC----------hHHHHHhCCCCeEeCCCCCcccccC
Q 036119 11 FLLVLDDVWNEN-YSRWSE-LSCPFGAG-AAGSKIVVTTRN----------LVVAERMGADPVYQLKELSDDDCLD 73 (839)
Q Consensus 11 ~LlvLDdv~~~~-~~~~~~-l~~~~~~~-~~gs~iivTtr~----------~~v~~~~~~~~~~~~~~l~~~~~~~ 73 (839)
-+||+||+|... ..+|+. +...+... ..|..|||+|.+ +++...++....++++++++++.+.
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 489999998632 235653 33333321 345666555443 4777777778899999999998863
No 79
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.13 E-value=0.63 Score=52.93 Aligned_cols=194 Identities=18% Similarity=0.196 Sum_probs=101.9
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcc-cCCCCCCCEEEEEecChHHHHH--hCC-CCeEeCC----CCCcccccCcCC---
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCP-FGAGAAGSKIVVTTRNLVVAER--MGA-DPVYQLK----ELSDDDCLDFTR--- 76 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~-~~~~~~gs~iivTtr~~~v~~~--~~~-~~~~~~~----~l~~~~~~~~~~--- 76 (839)
.+...+||||-=-..-.....-+.. ++...+|=.+|||||++--+.. +.. +...++. .++.+|+-.++.
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~ 207 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG 207 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC
Confidence 3578999999421111122222222 2344567899999998633321 111 1233333 345555553332
Q ss_pred -CchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHHHHHh---ccccccCCCCCcchhc--hhhhhhhhccCCCCc
Q 036119 77 -HQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLK---TDIWNLRDSDILPALR--LKQCFAYSSLFPKDY 150 (839)
Q Consensus 77 -~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~~~~---~~~~~~~~~~~~~~l~--~k~~f~~~a~f~~~~ 150 (839)
.+-...-++.+.+..+|.+-|+..++=.+++..+.+.--..+. +.+++.-.++|++.+. +|....-||+++.=
T Consensus 208 ~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f- 286 (894)
T COG2909 208 SLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF- 286 (894)
T ss_pred CCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh-
Confidence 2334466788889999999999988877773322221111111 0011100112332222 34444444443221
Q ss_pred ccChhHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHhccccc-cccCCCcceeecHHHHHHHHHHcc
Q 036119 151 EFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQ-QSSYDASRFVMHDLINDLARWAAG 218 (839)
Q Consensus 151 ~~~~~~li~~w~~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~-~~~~~~~~~~mHdlv~~la~~i~~ 218 (839)
-..|+....+ ++-|..++++|..++++. +.++....++.|.++.|+-+.--.
T Consensus 287 ---~~eL~~~Ltg-------------~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 287 ---NDELCNALTG-------------EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred ---hHHHHHHHhc-------------CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 1233332211 133566799999999885 444567899999999999875543
No 80
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=87.29 E-value=0.48 Score=46.96 Aligned_cols=93 Identities=24% Similarity=0.272 Sum_probs=48.7
Q ss_pred CCcEEEEEeccCCCC------hhhHhhhhcccCC--CCCCCEEEEEecChHHHHH--------hCCCCeEeCCCCCcccc
Q 036119 8 GKKFLLVLDDVWNEN------YSRWSELSCPFGA--GAAGSKIVVTTRNLVVAER--------MGADPVYQLKELSDDDC 71 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~------~~~~~~l~~~~~~--~~~gs~iivTtr~~~v~~~--------~~~~~~~~~~~l~~~~~ 71 (839)
+++++||+||+..-. ..-...+...+.. ....-.+|+++.+...... .+....+.+++++.+++
T Consensus 117 ~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~ 196 (234)
T PF01637_consen 117 GKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEA 196 (234)
T ss_dssp HCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHH
T ss_pred CCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHH
Confidence 356999999993322 0001112222211 2344556666666666654 12234699999999999
Q ss_pred cCcCCC-----c---hHHHHHHHHHHHhCCChHHHHH
Q 036119 72 LDFTRH-----Q---SLKEVGEQIVIKCGGLPLAAKT 100 (839)
Q Consensus 72 ~~~~~~-----~---~~~~~~~~i~~~c~glPlal~~ 100 (839)
+++... . .-++...+|...+||.|-.|.-
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 197 REFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 943221 2 2356678999999999987753
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.01 E-value=0.087 Score=48.76 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=40.1
Q ss_pred CCcceEecccccccccccccCcccccccccccccccCCccCCC---CCCCCCcceEEecCCCCC
Q 036119 683 TKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPE---DGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 683 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~ 743 (839)
..++.++-+++.+...-.+.+..+++++.|.+.+|......-- .+..++|+.|+|++|+-.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rI 164 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRI 164 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCee
Confidence 4667777777766655555667777777777777766543211 135678888888888643
No 82
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.91 E-value=2.6 Score=36.94 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=21.6
Q ss_pred ccCCCCCCeEEecCCCCCcccC-CCCCCCCCcceEeccccccccccc-ccCcccccccccccc
Q 036119 655 LHNLHHLQKIWIFGCPNLESFP-EEGLPSTKLTELTIYDCENLKALP-NCMHNLTSLLNLKIS 715 (839)
Q Consensus 655 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~ 715 (839)
+.++++|+.+.+... ...++ ..+..+++|+.+.+.++ +..++ ..+.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECCC--eeEeChhhccccccccccccccc--ccccceeeeeccccccccccc
Confidence 445556666666532 22232 23444455666666542 33332 234444455555554
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.20 E-value=0.71 Score=27.19 Aligned_cols=19 Identities=32% Similarity=0.572 Sum_probs=11.2
Q ss_pred CceeEEEeCCCccccccccc
Q 036119 294 PRLRVFSLCGYRNIFNLPNE 313 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp~~ 313 (839)
++|++|+|++|. +..+|..
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 456666666666 6666543
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.20 E-value=0.71 Score=27.19 Aligned_cols=19 Identities=32% Similarity=0.572 Sum_probs=11.2
Q ss_pred CceeEEEeCCCccccccccc
Q 036119 294 PRLRVFSLCGYRNIFNLPNE 313 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp~~ 313 (839)
++|++|+|++|. +..+|..
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 456666666666 6666543
No 85
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=83.50 E-value=4.7 Score=35.30 Aligned_cols=75 Identities=25% Similarity=0.237 Sum_probs=31.0
Q ss_pred CcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCC-CCCCCCCcceEecccccccccc-cccCcccccccccc
Q 036119 636 SLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPE-EGLPSTKLTELTIYDCENLKAL-PNCMHNLTSLLNLK 713 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~ 713 (839)
+|+.+.+.. .....-...+.++++|+.+.+.++ ...++. .+..+++|+.+.+.++ ...+ ...+..+++|+.+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccccc--ccccccccccccccccccc
Confidence 555555553 222222334556666777776653 233332 3444556677766442 2222 22344456666555
Q ss_pred cc
Q 036119 714 IS 715 (839)
Q Consensus 714 l~ 715 (839)
+.
T Consensus 88 ~~ 89 (129)
T PF13306_consen 88 IP 89 (129)
T ss_dssp ET
T ss_pred cC
Confidence 54
No 86
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=83.18 E-value=3.5 Score=43.71 Aligned_cols=95 Identities=14% Similarity=0.091 Sum_probs=62.9
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChH-HHHHhCC-CCeEeCCCCCcccccCcCCC---chHHH
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLV-VAERMGA-DPVYQLKELSDDDCLDFTRH---QSLKE 82 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~~~~-~~~~~~~~l~~~~~~~~~~~---~~~~~ 82 (839)
+++.++|+||+...+......+...+..-..+..+|++|.+.+ +...... ...+++.+++.++....... ..-.+
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~~~ 219 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLPDD 219 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCCHH
Confidence 5667899999966666667777777765555677888777764 4444333 25899999999998632111 11112
Q ss_pred HHHHHHHHhCCChHHHHHHH
Q 036119 83 VGEQIVIKCGGLPLAAKTLG 102 (839)
Q Consensus 83 ~~~~i~~~c~glPlal~~~g 102 (839)
....++..++|.|..+..+.
T Consensus 220 ~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 220 PRAALAALAEGSVGRALRLA 239 (365)
T ss_pred HHHHHHHHcCCCHHHHHHHh
Confidence 22678999999998665553
No 87
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=78.85 E-value=2.1 Score=40.70 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=56.5
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecCh-HHHHHhCC-CCeEeCCCCCcccccCcCCC-chHHHH
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNL-VVAERMGA-DPVYQLKELSDDDCLDFTRH-QSLKEV 83 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~-~~~~~~~~l~~~~~~~~~~~-~~~~~~ 83 (839)
.+.+-++|+||+..-....++.+...+....+.+.+|++|++. .+...... ...+++.+++.++....... .-..+.
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~gi~~~~ 173 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQGISEEA 173 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcCCCHHH
Confidence 3566789999996554556777877777666677788777654 33333322 25899999988885411100 112355
Q ss_pred HHHHHHHhCCChH
Q 036119 84 GEQIVIKCGGLPL 96 (839)
Q Consensus 84 ~~~i~~~c~glPl 96 (839)
+..+++.++|.|.
T Consensus 174 ~~~i~~~~~g~~r 186 (188)
T TIGR00678 174 AELLLALAGGSPG 186 (188)
T ss_pred HHHHHHHcCCCcc
Confidence 6677777777663
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.80 E-value=1.3 Score=26.16 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=11.3
Q ss_pred CCccCeeeccCCCCccc
Q 036119 800 LTSLKTLRLSDCPKLKY 816 (839)
Q Consensus 800 l~~L~~L~l~~c~~l~~ 816 (839)
+++|++|+|++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 35677777777766654
No 89
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=72.16 E-value=6.9 Score=43.43 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=56.3
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEE-EecChHHHHHhCC-CCeEeCCCCCcccccCcC-------CC
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVV-TTRNLVVAERMGA-DPVYQLKELSDDDCLDFT-------RH 77 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iiv-Ttr~~~v~~~~~~-~~~~~~~~l~~~~~~~~~-------~~ 77 (839)
.+++-++|+|+++.-....|+.+...+....+.+++|+ ||+.+.+...... ...+++++++.+|..... ..
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45777899999987666778888888776666677665 4455556554433 257999999888864211 11
Q ss_pred chHHHHHHHHHHHhCCCh
Q 036119 78 QSLKEVGEQIVIKCGGLP 95 (839)
Q Consensus 78 ~~~~~~~~~i~~~c~glP 95 (839)
.--.+....|++.++|-+
T Consensus 206 ~ie~eAL~~Ia~~s~Gsl 223 (507)
T PRK06645 206 KTDIEALRIIAYKSEGSA 223 (507)
T ss_pred CCCHHHHHHHHHHcCCCH
Confidence 111234455666666654
No 90
>PRK09087 hypothetical protein; Validated
Probab=70.89 E-value=21 Score=35.09 Aligned_cols=87 Identities=17% Similarity=0.082 Sum_probs=52.0
Q ss_pred EEEEEeccCC--CChhhHhhhhcccCCCCCCCEEEEEec---------ChHHHHHhCCCCeEeCCCCCcccccCcCC---
Q 036119 11 FLLVLDDVWN--ENYSRWSELSCPFGAGAAGSKIVVTTR---------NLVVAERMGADPVYQLKELSDDDCLDFTR--- 76 (839)
Q Consensus 11 ~LlvLDdv~~--~~~~~~~~l~~~~~~~~~gs~iivTtr---------~~~v~~~~~~~~~~~~~~l~~~~~~~~~~--- 76 (839)
-+|++|||.. .+++.+-.+..... ..|..||+|++ ..++...+.....++++++++++-.....
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 4788899932 22333333443333 34677999887 34555666677899999999887652111
Q ss_pred ----CchHHHHHHHHHHHhCCChHHHH
Q 036119 77 ----HQSLKEVGEQIVIKCGGLPLAAK 99 (839)
Q Consensus 77 ----~~~~~~~~~~i~~~c~glPlal~ 99 (839)
..--+++..-|++.+.|-.-++.
T Consensus 167 ~~~~~~l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 167 ADRQLYVDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred HHcCCCCCHHHHHHHHHHhhhhHHHHH
Confidence 11124566667777766665444
No 91
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=69.84 E-value=7.7 Score=40.45 Aligned_cols=94 Identities=15% Similarity=0.219 Sum_probs=62.2
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHH-HHhCC-CCeEeCCCCCcccccCcCCC---chHHH
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVA-ERMGA-DPVYQLKELSDDDCLDFTRH---QSLKE 82 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~-~~~~~-~~~~~~~~l~~~~~~~~~~~---~~~~~ 82 (839)
+++-.+|+||+..-....|..++..+..-.+++.+|++|.+.+.. .+... ...+++..+++++....... ..-.+
T Consensus 92 ~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~ 171 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYNDIKEE 171 (313)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcCCCHH
Confidence 455566777775455567888998888777889999999876543 33322 25899999988886421110 11134
Q ss_pred HHHHHHHHhCCChHHHHHH
Q 036119 83 VGEQIVIKCGGLPLAAKTL 101 (839)
Q Consensus 83 ~~~~i~~~c~glPlal~~~ 101 (839)
.+..++.+++|.|..+...
T Consensus 172 ~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 172 EKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 4667888999988655443
No 92
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=69.47 E-value=6.9 Score=38.45 Aligned_cols=62 Identities=27% Similarity=0.411 Sum_probs=34.8
Q ss_pred EEEEEeccCCCChh-hH-hhhhcccCC-CCCCCEEEEEecCh---------HHHHHhCCCCeEeCCCCCccccc
Q 036119 11 FLLVLDDVWNENYS-RW-SELSCPFGA-GAAGSKIVVTTRNL---------VVAERMGADPVYQLKELSDDDCL 72 (839)
Q Consensus 11 ~LlvLDdv~~~~~~-~~-~~l~~~~~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~~~~l~~~~~~ 72 (839)
-+||+||+..-... .| +.+...+.. ...+.++|+||+.. .+...+.....+++++++++|..
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~ 165 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKI 165 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHH
Confidence 38999999543211 23 233333321 12345788888742 22333333467899999886653
No 93
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=66.69 E-value=11 Score=39.83 Aligned_cols=95 Identities=16% Similarity=0.144 Sum_probs=60.6
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecCh-HHHHHhCCC-CeEeCCCCCcccccCcCC----CchH-
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNL-VVAERMGAD-PVYQLKELSDDDCLDFTR----HQSL- 80 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~~-~~~~~~~l~~~~~~~~~~----~~~~- 80 (839)
+++-++|+|++..-+....+.+...+..-.++..+|++|... .+.....+. ..+++.+++.++...... ...+
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~~~ 219 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQGSD 219 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccCCC
Confidence 567789999996555555666776665544456655555443 444444322 599999999999762211 1111
Q ss_pred HHHHHHHHHHhCCChHHHHHHH
Q 036119 81 KEVGEQIVIKCGGLPLAAKTLG 102 (839)
Q Consensus 81 ~~~~~~i~~~c~glPlal~~~g 102 (839)
.+....+++.++|.|..+..+.
T Consensus 220 ~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 220 GEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred HHHHHHHHHHcCCCHHHHHHHH
Confidence 4556789999999997655443
No 94
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=64.90 E-value=9.7 Score=39.76 Aligned_cols=93 Identities=14% Similarity=0.196 Sum_probs=61.3
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecCh-HHHHHhCCC-CeEeCCCCCcccccCcCC---CchHHH
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNL-VVAERMGAD-PVYQLKELSDDDCLDFTR---HQSLKE 82 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~~-~~~~~~~l~~~~~~~~~~---~~~~~~ 82 (839)
++|+. |+|++..-.......+...+..-..++.+|+||.+. .+..+..+- ..+++.+++++++..... ...-.+
T Consensus 106 ~~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~~~ 184 (328)
T PRK05707 106 GRKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESDER 184 (328)
T ss_pred CCeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCChH
Confidence 45555 669997665566777777776555678888888876 444454432 579999999998752211 112234
Q ss_pred HHHHHHHHhCCChHHHHHH
Q 036119 83 VGEQIVIKCGGLPLAAKTL 101 (839)
Q Consensus 83 ~~~~i~~~c~glPlal~~~ 101 (839)
.+..++..++|.|..+..+
T Consensus 185 ~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 185 ERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 5567788999999765554
No 95
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=64.60 E-value=22 Score=37.31 Aligned_cols=63 Identities=19% Similarity=0.110 Sum_probs=39.6
Q ss_pred CCEEEEEecChHHHHHh--CCCCeEeCCCCCcccccCcC-------CCchHHHHHHHHHHHhCCChHHHHHH
Q 036119 39 GSKIVVTTRNLVVAERM--GADPVYQLKELSDDDCLDFT-------RHQSLKEVGEQIVIKCGGLPLAAKTL 101 (839)
Q Consensus 39 gs~iivTtr~~~v~~~~--~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~i~~~c~glPlal~~~ 101 (839)
.+-|..|||...+.... +....++++++++++..... ...--.+.+..|++.|+|.|=.+..+
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~ 222 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRL 222 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHH
Confidence 45566777755444332 22347899999999977221 12223467889999999999543333
No 96
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=63.24 E-value=0.35 Score=45.83 Aligned_cols=39 Identities=28% Similarity=0.429 Sum_probs=18.9
Q ss_pred cCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccc
Q 036119 291 NHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKW 330 (839)
Q Consensus 291 ~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~ 330 (839)
..+....+||++.|+ ...+-..|..+..|..||++.|.+
T Consensus 39 ~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq~ 77 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQI 77 (326)
T ss_pred hccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhhH
Confidence 334445555555555 444444444444455555554444
No 97
>COG3903 Predicted ATPase [General function prediction only]
Probab=61.67 E-value=3.8 Score=42.89 Aligned_cols=201 Identities=17% Similarity=0.170 Sum_probs=108.4
Q ss_pred hhhcCCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHHHhCCCCeEeCCCCCccc-cc---------
Q 036119 3 KKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPVYQLKELSDDD-CL--------- 72 (839)
Q Consensus 3 ~~~l~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~~~~~~~~~l~~~~-~~--------- 72 (839)
..+...+|.++|+||...- +++-..+...+..+++.-+|+.|+|..-.. ..+..+.++.|+.-+ +-
T Consensus 82 ~~~~~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~ 157 (414)
T COG3903 82 VRRIGDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVL 157 (414)
T ss_pred HHHHhhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHH
Confidence 4556789999999998221 123344555666677778889999854333 234577777777665 22
Q ss_pred ---CcCCCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHHHHHhccccccCCCCCc---------chhc-----
Q 036119 73 ---DFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWNLRDSDIL---------PALR----- 135 (839)
Q Consensus 73 ---~~~~~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~~---------~~l~----- 135 (839)
.+.-...-...+.+|.+...|.|+||...++..+.- ...+.-..++.....+.+..-. ..+.
T Consensus 158 ~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~l 236 (414)
T COG3903 158 VALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYAL 236 (414)
T ss_pred hccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHh
Confidence 111122334678889999999999999998877665 3333333333222112111111 1111
Q ss_pred ----hhhhhhhhccCCCCcccChhHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHhcccccccc-CCCcceeecHHHH
Q 036119 136 ----LKQCFAYSSLFPKDYEFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSS-YDASRFVMHDLIN 210 (839)
Q Consensus 136 ----~k~~f~~~a~f~~~~~~~~~~li~~w~~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~-~~~~~~~mHdlv~ 210 (839)
.+--|.-++.|.-.+... ...|.+.|-..... .-.+..-+..++++++..... .....++.-+.+|
T Consensus 237 Ltgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~-----~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r 307 (414)
T COG3903 237 LTGWERALFGRLAVFVGGFDLG----LALAVAAGADVDVP-----RYLVLLALTLLVDKSLVVALDLLGRARYRLLETGR 307 (414)
T ss_pred hhhHHHHHhcchhhhhhhhccc----HHHHHhcCCccccc-----hHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHH
Confidence 223344444444333222 33344443322101 112333367788888876543 2244555556666
Q ss_pred HHHHHHc
Q 036119 211 DLARWAA 217 (839)
Q Consensus 211 ~la~~i~ 217 (839)
.++...-
T Consensus 308 ~YalaeL 314 (414)
T COG3903 308 RYALAEL 314 (414)
T ss_pred HHHHHHH
Confidence 6665443
No 98
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=61.06 E-value=11 Score=43.45 Aligned_cols=71 Identities=17% Similarity=0.093 Sum_probs=46.9
Q ss_pred hhhhcCCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEE--EecChHHH-HHhCC-CCeEeCCCCCccccc
Q 036119 2 LKKQLFGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVV--TTRNLVVA-ERMGA-DPVYQLKELSDDDCL 72 (839)
Q Consensus 2 l~~~l~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iiv--Ttr~~~v~-~~~~~-~~~~~~~~l~~~~~~ 72 (839)
+.+.++.+++.++-|+.|..+...|+.+...+....+...|++ ||++.... ..... ...+++++++.+|.+
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~ 359 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHH
Confidence 4567788889999888887776778888877776666666666 66654322 22211 135677777766653
No 99
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=59.15 E-value=6.1 Score=23.28 Aligned_cols=17 Identities=18% Similarity=0.469 Sum_probs=10.9
Q ss_pred ceeEEEeCCCcccccccc
Q 036119 295 RLRVFSLCGYRNIFNLPN 312 (839)
Q Consensus 295 ~L~~L~L~~~~~~~~lp~ 312 (839)
+|++|++++|+ +..+|+
T Consensus 3 ~L~~L~vs~N~-Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQ-LTSLPE 19 (26)
T ss_pred ccceeecCCCc-cccCcc
Confidence 46666666666 666664
No 100
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=59.06 E-value=6.3 Score=22.52 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=6.4
Q ss_pred CcCcEeEecCccc
Q 036119 318 KHLRCLNLSRTKW 330 (839)
Q Consensus 318 ~~L~~L~L~~~~~ 330 (839)
++|++|+|++|.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 4556666666654
No 101
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=58.90 E-value=17 Score=39.04 Aligned_cols=95 Identities=12% Similarity=0.016 Sum_probs=61.4
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecCh-HHHHHhCC-CCeEeCCCCCcccccCcCC-C-chHHHH
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNL-VVAERMGA-DPVYQLKELSDDDCLDFTR-H-QSLKEV 83 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~-~~~~~~~~l~~~~~~~~~~-~-~~~~~~ 83 (839)
+++-.+|+||+..-.......+...+....++..+|++|.+. .+.....+ ...++++.++.++...... . .--.+.
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~~~~~ 195 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGVDPET 195 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCCCHHH
Confidence 455577789996554445566666666555677777777764 44444433 2589999999998763221 1 122456
Q ss_pred HHHHHHHhCCChHHHHHHH
Q 036119 84 GEQIVIKCGGLPLAAKTLG 102 (839)
Q Consensus 84 ~~~i~~~c~glPlal~~~g 102 (839)
+..++..++|-|..+..+.
T Consensus 196 a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 196 ARRAARASQGHIGRARRLA 214 (394)
T ss_pred HHHHHHHcCCCHHHHHHHh
Confidence 7788999999997554443
No 102
>PRK13342 recombination factor protein RarA; Reviewed
Probab=57.68 E-value=13 Score=40.58 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=53.5
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEE--ecChH--HHHHhCC-CCeEeCCCCCcccccCcCC-----
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVT--TRNLV--VAERMGA-DPVYQLKELSDDDCLDFTR----- 76 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivT--tr~~~--v~~~~~~-~~~~~~~~l~~~~~~~~~~----- 76 (839)
.+++.+|++|+++.-...+.+.+...+.. |..++|. |.+.. +...... ...++++++++++.+....
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 35788999999976554556666555532 4555553 33322 2222211 2589999999998872211
Q ss_pred ----C-chHHHHHHHHHHHhCCChHHHH
Q 036119 77 ----H-QSLKEVGEQIVIKCGGLPLAAK 99 (839)
Q Consensus 77 ----~-~~~~~~~~~i~~~c~glPlal~ 99 (839)
. .--.+....+++.|+|-+-.+.
T Consensus 167 ~~~~~i~i~~~al~~l~~~s~Gd~R~al 194 (413)
T PRK13342 167 KERGLVELDDEALDALARLANGDARRAL 194 (413)
T ss_pred hhcCCCCCCHHHHHHHHHhCCCCHHHHH
Confidence 0 1224566678888888875443
No 103
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.35 E-value=20 Score=39.97 Aligned_cols=88 Identities=10% Similarity=0.148 Sum_probs=56.9
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecC-hHHHHHhCC-CCeEeCCCCCcccccCcC-------CCc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRN-LVVAERMGA-DPVYQLKELSDDDCLDFT-------RHQ 78 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~-~~v~~~~~~-~~~~~~~~l~~~~~~~~~-------~~~ 78 (839)
+++-++|+|+++......++.+...+....+...+|++|.. ..+...... ...|++.++++++..... ...
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 56678999999776666788888888766556666666654 344333332 358999999998865211 111
Q ss_pred hHHHHHHHHHHHhCCCh
Q 036119 79 SLKEVGEQIVIKCGGLP 95 (839)
Q Consensus 79 ~~~~~~~~i~~~c~glP 95 (839)
--.+....|++.++|.+
T Consensus 195 i~~~Al~~ia~~s~Gdl 211 (504)
T PRK14963 195 AEPEALQLVARLADGAM 211 (504)
T ss_pred CCHHHHHHHHHHcCCCH
Confidence 12355666777777766
No 104
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=55.97 E-value=0.62 Score=44.21 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=39.7
Q ss_pred hcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCc
Q 036119 290 LNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNC 357 (839)
Q Consensus 290 ~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~ 357 (839)
|+.+..|..|+++.|. +..+|..++.+..++.+++..|.. +..|-+.+. +++++++++.++
T Consensus 61 ~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k-----~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNNH-SQQPKSQKK-----EPHPKKNEQKKT 121 (326)
T ss_pred hHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccch-hhCCccccc-----cCCcchhhhccC
Confidence 4445556666777666 677777777777777777666665 556666555 666666666664
No 105
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=55.73 E-value=30 Score=37.47 Aligned_cols=112 Identities=13% Similarity=0.134 Sum_probs=58.7
Q ss_pred CCcEEEEEeccCCCC----hhhHhhhhcccCCCCCCCE--EEEEecChHHHHHhC-------CCCeEeCCCCCcccccCc
Q 036119 8 GKKFLLVLDDVWNEN----YSRWSELSCPFGAGAAGSK--IVVTTRNLVVAERMG-------ADPVYQLKELSDDDCLDF 74 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~----~~~~~~l~~~~~~~~~gs~--iivTtr~~~v~~~~~-------~~~~~~~~~l~~~~~~~~ 74 (839)
++.++||+|+++.-. .+.+..+...+.. .++++ ||.++...++..... ....+.+++++.++..++
T Consensus 137 ~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~i 215 (394)
T PRK00411 137 DRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDI 215 (394)
T ss_pred CCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHH
Confidence 456899999995421 2234444443322 23444 677777655443221 124678999998876521
Q ss_pred -------------CCCchHHHHHHHHHHHhCCChHHHHHHHHHh-----cCC--CChhHHHHHHhc
Q 036119 75 -------------TRHQSLKEVGEQIVIKCGGLPLAAKTLGGLL-----RGR--DDPRDWEFVLKT 120 (839)
Q Consensus 75 -------------~~~~~~~~~~~~i~~~c~glPlal~~~g~~L-----~~~--~~~~~w~~~~~~ 120 (839)
+....++.++.......|..+.|+.++-.+. +++ -+.++++.+.+.
T Consensus 216 l~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~ 281 (394)
T PRK00411 216 LKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEK 281 (394)
T ss_pred HHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 1122233333333333566778877765322 122 255666666553
No 106
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=54.74 E-value=18 Score=38.99 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=60.3
Q ss_pred CcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHHHh------CCCCeEeCCCCCcccccCcCCCchHH-
Q 036119 9 KKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERM------GADPVYQLKELSDDDCLDFTRHQSLK- 81 (839)
Q Consensus 9 k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~- 81 (839)
++..|+||.| .....|+..+..+-+.++. +|++|+-+..+...- |-...+++.||+..|...+.......
T Consensus 94 ~~~yifLDEI--q~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~~~~ 170 (398)
T COG1373 94 EKSYIFLDEI--QNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEIEPS 170 (398)
T ss_pred CCceEEEecc--cCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcccccchh
Confidence 6789999999 5557899999998877777 899998887665322 22358999999988876443211111
Q ss_pred --HHHHHHHHHhCCChHHHHHH
Q 036119 82 --EVGEQIVIKCGGLPLAAKTL 101 (839)
Q Consensus 82 --~~~~~i~~~c~glPlal~~~ 101 (839)
+..-+---..||.|-++..-
T Consensus 171 ~~~~~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 171 KLELLFEKYLETGGFPESVKAD 192 (398)
T ss_pred HHHHHHHHHHHhCCCcHHHhCc
Confidence 11222233468999776653
No 107
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.48 E-value=38 Score=36.16 Aligned_cols=88 Identities=13% Similarity=0.171 Sum_probs=53.5
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecCh-HHHHHhCC-CCeEeCCCCCcccccCc-------CCCc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNL-VVAERMGA-DPVYQLKELSDDDCLDF-------TRHQ 78 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~-~~~~~~~~l~~~~~~~~-------~~~~ 78 (839)
+++-++|+|++..-....++.+...+....+..++|++|.+. .+...... ...+++++++.++.... ....
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~ 197 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID 197 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 456689999996554445777777776655667788777654 34433321 25899999988875311 1111
Q ss_pred hHHHHHHHHHHHhCCCh
Q 036119 79 SLKEVGEQIVIKCGGLP 95 (839)
Q Consensus 79 ~~~~~~~~i~~~c~glP 95 (839)
--.+.+..|++.++|-|
T Consensus 198 i~~~al~~ia~~s~G~~ 214 (363)
T PRK14961 198 TDEYALKLIAYHAHGSM 214 (363)
T ss_pred CCHHHHHHHHHHcCCCH
Confidence 12244455666666655
No 108
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=50.09 E-value=23 Score=37.10 Aligned_cols=94 Identities=15% Similarity=0.232 Sum_probs=61.0
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecCh-HHHHHhCCC-CeEeCCCCCcccccCcCCCchHHHHHH
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNL-VVAERMGAD-PVYQLKELSDDDCLDFTRHQSLKEVGE 85 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 85 (839)
+++-.+|+|++..-....+..++..+..-.++..+|.+|.+. .++.+..+- ..+.+.++++++...........+ ..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~~~-~~ 209 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGVAD-AD 209 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCCCh-HH
Confidence 455577889997766667888888887767778777777764 555554432 589999999888752211111111 22
Q ss_pred HHHHHhCCChHHHHHHH
Q 036119 86 QIVIKCGGLPLAAKTLG 102 (839)
Q Consensus 86 ~i~~~c~glPlal~~~g 102 (839)
.++..++|.|..+..+.
T Consensus 210 ~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 210 ALLAEAGGAPLAALALA 226 (342)
T ss_pred HHHHHcCCCHHHHHHHH
Confidence 35778899997554443
No 109
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=49.15 E-value=0.2 Score=54.90 Aligned_cols=181 Identities=20% Similarity=0.142 Sum_probs=87.0
Q ss_pred cceeEeccCCCchhhh----hhc-CCCCcceeeecccccccCcc----ccccCC-CCCCeEEecCCCCCcc----cCCCC
Q 036119 614 LKYLKIEDCSKLESLA----ERL-DNTSLEEISISVLENLKSLP----ADLHNL-HHLQKIWIFGCPNLES----FPEEG 679 (839)
Q Consensus 614 L~~L~l~~~~~l~~~~----~~~-~~~~L~~L~l~~~~~~~~~~----~~~~~l-~~L~~L~l~~~~~~~~----~~~~~ 679 (839)
+..|.+.+|.....-. ..+ ..+.|+.|++++|.+...-- ..+... ..|++|++..|..... +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6666777765433221 111 23677777777776653211 112222 4556666666655432 12223
Q ss_pred CCCCCcceEecccccccc----cccccCc----ccccccccccccccCCccCCCC-----CCCCC-cceEEecCCCCCCc
Q 036119 680 LPSTKLTELTIYDCENLK----ALPNCMH----NLTSLLNLKISECPSVVSFPED-----GFPTN-LQSLDVHDLKISKP 745 (839)
Q Consensus 680 ~~~~~L~~L~l~~~~~l~----~lp~~l~----~l~~L~~L~l~~~~~~~~~~~~-----~~~~~-L~~L~l~~~~~~~~ 745 (839)
.....++.++++.|.... .++..+. ...+++.|++.+|..+...-.. ...++ +..|++..|.+-..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 335566677776665421 1122222 3556666666666554211000 11222 55566666654421
Q ss_pred cccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCc----cccCCCCCCccCeeeccCCC
Q 036119 746 LLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLES----ISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 746 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~~~~l~~L~~L~l~~c~ 812 (839)
........ +...-..++.++++.|++... +...+..++.+++|.+++++
T Consensus 249 g~~~L~~~------------------l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 249 GVEKLLPC------------------LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHHHHHH------------------hcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 10000000 000113577788888876553 33334556677888888764
No 110
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=48.36 E-value=13 Score=21.96 Aligned_cols=13 Identities=38% Similarity=0.475 Sum_probs=7.7
Q ss_pred CcCcEeEecCccc
Q 036119 318 KHLRCLNLSRTKW 330 (839)
Q Consensus 318 ~~L~~L~L~~~~~ 330 (839)
.+|+.|++++|.|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4566666666655
No 111
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=46.64 E-value=29 Score=35.96 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=62.9
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecCh-HHHHHhCCC-CeEeCCCCCcccccCcCCCchHHHHHH
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNL-VVAERMGAD-PVYQLKELSDDDCLDFTRHQSLKEVGE 85 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 85 (839)
+++-.+|+|++..-.......++..+..-.+++.+|++|.+. .++.+..+- ..+.+.+++++++.......... .+.
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~~-~~~ 185 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGIT-VPA 185 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCCc-hHH
Confidence 345577889986655556777777776666678887777765 566666543 58899999998875322111111 245
Q ss_pred HHHHHhCCChHHHHHHH
Q 036119 86 QIVIKCGGLPLAAKTLG 102 (839)
Q Consensus 86 ~i~~~c~glPlal~~~g 102 (839)
.+++.++|.|+.+..+.
T Consensus 186 ~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 186 YALKLNMGSPLKTLAMM 202 (319)
T ss_pred HHHHHcCCCHHHHHHHh
Confidence 67889999998776553
No 112
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=46.45 E-value=27 Score=36.18 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=40.4
Q ss_pred CCEEEEEecChHHHHHh--CCCCeEeCCCCCcccccCcCC-------CchHHHHHHHHHHHhCCChHHHHHHH
Q 036119 39 GSKIVVTTRNLVVAERM--GADPVYQLKELSDDDCLDFTR-------HQSLKEVGEQIVIKCGGLPLAAKTLG 102 (839)
Q Consensus 39 gs~iivTtr~~~v~~~~--~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~c~glPlal~~~g 102 (839)
.+-|.+|||...+.... +....+++++++.+|..+... ..--.+....|++.|+|.|=.+..++
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll 202 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLL 202 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHH
Confidence 45666777765554332 223478999999998773221 11224677889999999995544443
No 113
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=46.14 E-value=34 Score=35.52 Aligned_cols=95 Identities=11% Similarity=0.095 Sum_probs=60.6
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecC-hHHHHHhCCC-CeEeCCCCCcccccCcCC-CchHHHHH
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRN-LVVAERMGAD-PVYQLKELSDDDCLDFTR-HQSLKEVG 84 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~-~~v~~~~~~~-~~~~~~~l~~~~~~~~~~-~~~~~~~~ 84 (839)
+++-.+|+|++..-....-..++..+..-.+++.+|++|.+ ..++.+..+- ..+.+..++.+++..... ...-.+.+
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~~~~~~a 191 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQGVSERAA 191 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcCCChHHH
Confidence 46668889999554433445566666555567878777775 4555555443 578898888888752111 11123346
Q ss_pred HHHHHHhCCChHHHHHHH
Q 036119 85 EQIVIKCGGLPLAAKTLG 102 (839)
Q Consensus 85 ~~i~~~c~glPlal~~~g 102 (839)
..++..++|.|+.+..+.
T Consensus 192 ~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 192 QEALDAARGHPGLAAQWL 209 (319)
T ss_pred HHHHHHcCCCHHHHHHHh
Confidence 678999999998665554
No 114
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=45.16 E-value=14 Score=22.17 Aligned_cols=13 Identities=46% Similarity=0.529 Sum_probs=9.0
Q ss_pred CcCcEeEecCccc
Q 036119 318 KHLRCLNLSRTKW 330 (839)
Q Consensus 318 ~~L~~L~L~~~~~ 330 (839)
++|++|||++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 4577777777765
No 115
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=44.32 E-value=72 Score=33.86 Aligned_cols=89 Identities=15% Similarity=0.127 Sum_probs=50.3
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChH-HHHHhC-CCCeEeCCCCCcccccCc-------CCCc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLV-VAERMG-ADPVYQLKELSDDDCLDF-------TRHQ 78 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~~~-~~~~~~~~~l~~~~~~~~-------~~~~ 78 (839)
+++-++|+|++..-.....+.+...+....+...+|++|.+.+ +..... -...++++++++++.... ....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4556889999844333456667766655455677777776654 333332 224777877777664311 0111
Q ss_pred hHHHHHHHHHHHhCCChH
Q 036119 79 SLKEVGEQIVIKCGGLPL 96 (839)
Q Consensus 79 ~~~~~~~~i~~~c~glPl 96 (839)
--.+.+..+++.++|-|-
T Consensus 196 i~~~a~~~l~~~~~g~~~ 213 (355)
T TIGR02397 196 IEDEALELIARAADGSLR 213 (355)
T ss_pred CCHHHHHHHHHHcCCChH
Confidence 112455556666666654
No 116
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.02 E-value=9.5 Score=41.51 Aligned_cols=61 Identities=13% Similarity=0.046 Sum_probs=31.8
Q ss_pred CCcceeeeccccccc--CccccccCCCCCCeEEecCCCCC--c--ccCCCCCCCCCcceEecccccccc
Q 036119 635 TSLEEISISVLENLK--SLPADLHNLHHLQKIWIFGCPNL--E--SFPEEGLPSTKLTELTIYDCENLK 697 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~--~--~~~~~~~~~~~L~~L~l~~~~~l~ 697 (839)
+.+..++|++|++.. .+..-....|+|..|+|++|... . .++. .....|++|-+.+|+...
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K--~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK--LKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh--hcCCCHHHeeecCCcccc
Confidence 566677777776542 22222335667777777776211 1 1111 112356666666666543
No 117
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.80 E-value=94 Score=34.45 Aligned_cols=112 Identities=18% Similarity=0.154 Sum_probs=63.9
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecC-hHHHHHhCC-CCeEeCCCCCcccccCc-------CCCc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRN-LVVAERMGA-DPVYQLKELSDDDCLDF-------TRHQ 78 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~-~~v~~~~~~-~~~~~~~~l~~~~~~~~-------~~~~ 78 (839)
+++-++|+|++..-.....+.+...+........+|++|.. ..+...... ...+++++++.++.... ....
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 56679999999443334456666666554444555544443 455444432 25889999998885411 1111
Q ss_pred hHHHHHHHHHHHhC-CChHHHHHHHHHhc---CCCChhHHHHHHh
Q 036119 79 SLKEVGEQIVIKCG-GLPLAAKTLGGLLR---GRDDPRDWEFVLK 119 (839)
Q Consensus 79 ~~~~~~~~i~~~c~-glPlal~~~g~~L~---~~~~~~~w~~~~~ 119 (839)
--.+....|++.++ +++.|+..+..+.. ++-+.+..+.++.
T Consensus 196 i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~ 240 (472)
T PRK14962 196 IDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALG 240 (472)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 22355667777775 55677766654322 2235566666554
No 118
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.40 E-value=58 Score=37.15 Aligned_cols=97 Identities=12% Similarity=0.086 Sum_probs=56.7
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecC-hHHHHHhCC-CCeEeCCCCCcccccCcC-------CC
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRN-LVVAERMGA-DPVYQLKELSDDDCLDFT-------RH 77 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~-~~v~~~~~~-~~~~~~~~l~~~~~~~~~-------~~ 77 (839)
.+++-++|+|++..-....++.|...+........+|++|.. ..+...... ...|+++.+++++..... ..
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi 196 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV 196 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC
Confidence 356778999999554445567777777554445666666655 444433321 247889999888764211 11
Q ss_pred chHHHHHHHHHHHhCCC-hHHHHHHHH
Q 036119 78 QSLKEVGEQIVIKCGGL-PLAAKTLGG 103 (839)
Q Consensus 78 ~~~~~~~~~i~~~c~gl-Plal~~~g~ 103 (839)
.--.+.+..|++.++|- --|+..+..
T Consensus 197 ~id~eal~lIA~~s~GdlR~Al~lLeq 223 (624)
T PRK14959 197 DYDPAAVRLIARRAAGSVRDSMSLLGQ 223 (624)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11234555666666663 355555543
No 119
>PRK08727 hypothetical protein; Validated
Probab=41.33 E-value=33 Score=33.88 Aligned_cols=62 Identities=21% Similarity=0.132 Sum_probs=34.3
Q ss_pred cEEEEEeccCCCC-hhhHhhhhccc-CC-CCCCCEEEEEecC---------hHHHHHhCCCCeEeCCCCCcccc
Q 036119 10 KFLLVLDDVWNEN-YSRWSELSCPF-GA-GAAGSKIVVTTRN---------LVVAERMGADPVYQLKELSDDDC 71 (839)
Q Consensus 10 ~~LlvLDdv~~~~-~~~~~~l~~~~-~~-~~~gs~iivTtr~---------~~v~~~~~~~~~~~~~~l~~~~~ 71 (839)
--+||+||+.... ...|+...-.+ .. ..+|..||+||+. .++...++....++++++++++-
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~ 167 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVAR 167 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHH
Confidence 3489999983211 12343222222 11 2346679999984 23333444455788888877664
No 120
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=40.83 E-value=55 Score=34.45 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=35.7
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecCh-HHHHHhCC-CCeEeCCCCCcccc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNL-VVAERMGA-DPVYQLKELSDDDC 71 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~-~~~~~~~~l~~~~~ 71 (839)
+.+-+||+||+..-.....+.+...+......+++|+||... .+...... ...+++.+++.++.
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~ 189 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDEL 189 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHH
Confidence 344589999994433233444554444444567788887543 23232222 24677777777664
No 121
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=39.66 E-value=42 Score=38.96 Aligned_cols=65 Identities=9% Similarity=0.117 Sum_probs=45.2
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHH-HHhCC-CCeEeCCCCCccccc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVA-ERMGA-DPVYQLKELSDDDCL 72 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~-~~~~~-~~~~~~~~l~~~~~~ 72 (839)
++.-++|+|+|..-....|..++..+....+..++|+||++.+-. ..... ...|+++.++.++..
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv 184 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIV 184 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHH
Confidence 455688899996555556888888776666678888888876443 33222 247888888887753
No 122
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=39.58 E-value=42 Score=22.79 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=5.6
Q ss_pred CCcccceeeec
Q 036119 775 FPASLTNLWIS 785 (839)
Q Consensus 775 ~~~~L~~L~l~ 785 (839)
+|.+|+.|.++
T Consensus 32 lP~sl~~L~fg 42 (44)
T PF05725_consen 32 LPNSLKSLSFG 42 (44)
T ss_pred cCCCceEEEee
Confidence 34455555554
No 123
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.84 E-value=71 Score=35.99 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=43.7
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecC-hHHHHHhCC-CCeEeCCCCCcccc
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRN-LVVAERMGA-DPVYQLKELSDDDC 71 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~-~~v~~~~~~-~~~~~~~~l~~~~~ 71 (839)
.+++-++|+||+..-....++.+...+.......++|.+|.+ ..+...... ...++++.++.++.
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI 183 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADI 183 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHH
Confidence 356779999999655555677788777765556766655554 445544322 25899999988774
No 124
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.81 E-value=55 Score=37.40 Aligned_cols=90 Identities=9% Similarity=0.074 Sum_probs=58.0
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecC-hHHHHHhCC-CCeEeCCCCCcccccCc-------CCC
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRN-LVVAERMGA-DPVYQLKELSDDDCLDF-------TRH 77 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~-~~v~~~~~~-~~~~~~~~l~~~~~~~~-------~~~ 77 (839)
.++.-++|+|+|..-....+..|+..+..-..+.++|++|.+ ..+.....+ ...|+++.++.++.... ...
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi 201 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI 201 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC
Confidence 356678999999665556778888887665556676666655 444443332 25889999988876521 111
Q ss_pred chHHHHHHHHHHHhCCChH
Q 036119 78 QSLKEVGEQIVIKCGGLPL 96 (839)
Q Consensus 78 ~~~~~~~~~i~~~c~glPl 96 (839)
..-.+....|++.++|-|-
T Consensus 202 ~~d~eAL~~IA~~A~Gs~R 220 (700)
T PRK12323 202 AHEVNALRLLAQAAQGSMR 220 (700)
T ss_pred CCCHHHHHHHHHHcCCCHH
Confidence 1123445678888888884
No 125
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.48 E-value=30 Score=37.39 Aligned_cols=93 Identities=10% Similarity=0.078 Sum_probs=56.8
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEe-cChHHHHHhCC-CCeEeCCCCCcccccCcC-------CCc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTT-RNLVVAERMGA-DPVYQLKELSDDDCLDFT-------RHQ 78 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTt-r~~~v~~~~~~-~~~~~~~~l~~~~~~~~~-------~~~ 78 (839)
+++-++|+|++..-....++.+...+....+.+.+|++| +.+.+...... ...+++++++++|..... ...
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~ 205 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS 205 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 556688999995544456888888777666677776665 44455443321 247888888887754111 111
Q ss_pred hHHHHHHHHHHHhCCCh-HHHHH
Q 036119 79 SLKEVGEQIVIKCGGLP-LAAKT 100 (839)
Q Consensus 79 ~~~~~~~~i~~~c~glP-lal~~ 100 (839)
--.+.+..+++.++|-+ .|+..
T Consensus 206 i~~~al~~l~~~s~g~lr~a~~~ 228 (397)
T PRK14955 206 VDADALQLIGRKAQGSMRDAQSI 228 (397)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHH
Confidence 12356677777888765 34443
No 126
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=38.40 E-value=57 Score=35.69 Aligned_cols=86 Identities=17% Similarity=0.214 Sum_probs=54.9
Q ss_pred hhcCCCcEEEEEeccCCCChhhHhhhhcc---------------cCCCCCCCEEEEEecChHHHHHhCCC----CeEeCC
Q 036119 4 KQLFGKKFLLVLDDVWNENYSRWSELSCP---------------FGAGAAGSKIVVTTRNLVVAERMGAD----PVYQLK 64 (839)
Q Consensus 4 ~~l~~k~~LlvLDdv~~~~~~~~~~l~~~---------------~~~~~~gs~iivTtr~~~v~~~~~~~----~~~~~~ 64 (839)
+.-|+.--.||+||+ +...+|-.++-. .++.|+.=-|+-||..+.|+..|+.. ..|+|+
T Consensus 593 DAYkS~lsiivvDdi--ErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDI--ERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HhhcCcceEEEEcch--hhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 444667778999999 444566443222 22333334456688889999999753 589999
Q ss_pred CCCc-cccc------CcCCCchHHHHHHHHHHHh
Q 036119 65 ELSD-DDCL------DFTRHQSLKEVGEQIVIKC 91 (839)
Q Consensus 65 ~l~~-~~~~------~~~~~~~~~~~~~~i~~~c 91 (839)
.++. ++.. +.|.+.....++.+...+|
T Consensus 671 nl~~~~~~~~vl~~~n~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNIFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHccCCCcchhHHHHHHHhccc
Confidence 9987 3333 4555666666666666655
No 127
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=37.87 E-value=41 Score=32.26 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=23.2
Q ss_pred cEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHH
Q 036119 10 KFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAE 53 (839)
Q Consensus 10 ~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~ 53 (839)
...||+|++-+-...++..+.... |.|||||++--..++-.
T Consensus 120 ~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~~Q~D~ 160 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDPSQIDL 160 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE-------
T ss_pred ceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCceeecC
Confidence 469999999777667777776664 78899999987766654
No 128
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=37.55 E-value=60 Score=33.80 Aligned_cols=92 Identities=9% Similarity=0.034 Sum_probs=60.7
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecCh-HHHHHhCCC-CeEeCCCCCcccccCcCCC--chHHHH
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNL-VVAERMGAD-PVYQLKELSDDDCLDFTRH--QSLKEV 83 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~~-~~~~~~~l~~~~~~~~~~~--~~~~~~ 83 (839)
+++-.+|+|++..-.......++..+..-.++..+|++|.+. .++.+..+- ..+.+.+++++++.+.... ..-...
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~~~~~ 185 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSAEISE 185 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhccChHH
Confidence 566677899996655556677777776666677888888775 555555443 5899999999887521110 111223
Q ss_pred HHHHHHHhCCChHHHH
Q 036119 84 GEQIVIKCGGLPLAAK 99 (839)
Q Consensus 84 ~~~i~~~c~glPlal~ 99 (839)
+...+..++|-|..+.
T Consensus 186 ~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 186 ILTALRINYGRPLLAL 201 (325)
T ss_pred HHHHHHHcCCCHHHHH
Confidence 5567888999996443
No 129
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=37.06 E-value=36 Score=30.03 Aligned_cols=44 Identities=9% Similarity=0.038 Sum_probs=27.8
Q ss_pred CCCcEEEEEeccCCC---ChhhHhhhhcccCCC---CCCCEEEEEecChH
Q 036119 7 FGKKFLLVLDDVWNE---NYSRWSELSCPFGAG---AAGSKIVVTTRNLV 50 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~---~~~~~~~l~~~~~~~---~~gs~iivTtr~~~ 50 (839)
..+..+||+||++.. ....+.++....... ..+.+||+||....
T Consensus 82 ~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 82 KAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred cCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 457789999999742 222344444444332 46789999988654
No 130
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=36.63 E-value=41 Score=30.75 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=28.0
Q ss_pred CCcEEEEEeccCC---CChhhHhhhhcccCCCCCCCEEEEEecCh
Q 036119 8 GKKFLLVLDDVWN---ENYSRWSELSCPFGAGAAGSKIVVTTRNL 49 (839)
Q Consensus 8 ~k~~LlvLDdv~~---~~~~~~~~l~~~~~~~~~gs~iivTtr~~ 49 (839)
++-=|||||++-- -...+.+.+..-+.....+.-||+|.|+.
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 3556999999832 12234556666665555678899999984
No 131
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=35.77 E-value=49 Score=34.71 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=44.6
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecCh-HHHHHhCCC-CeEeCCCCCccccc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNL-VVAERMGAD-PVYQLKELSDDDCL 72 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~~-~~~~~~~l~~~~~~ 72 (839)
+++-.+|+|++..-....-..+...+..-.+++.+|.+|++. .+......- ..+++.++++++..
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~ 175 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLI 175 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHH
Confidence 455568899985554445666777776666678888888764 444544433 58999999888864
No 132
>PLN03025 replication factor C subunit; Provisional
Probab=35.43 E-value=45 Score=34.83 Aligned_cols=65 Identities=14% Similarity=0.233 Sum_probs=38.0
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecCh-HHHHHhCC-CCeEeCCCCCccccc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNL-VVAERMGA-DPVYQLKELSDDDCL 72 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~-~~~~~~~~l~~~~~~ 72 (839)
++.-++|+||+..-....-+.+........+.+++|+++... .+...... ...++++++++++..
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~ 164 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEIL 164 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHH
Confidence 456789999995543333444544444445667888777543 22222211 147888888877753
No 133
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=34.62 E-value=77 Score=31.05 Aligned_cols=60 Identities=32% Similarity=0.357 Sum_probs=30.5
Q ss_pred EEEEEeccCCCChhhHhhhhcccCC-CCCCC-EEEEEecChHH--------HHHhCCCCeEeCCCCCccc
Q 036119 11 FLLVLDDVWNENYSRWSELSCPFGA-GAAGS-KIVVTTRNLVV--------AERMGADPVYQLKELSDDD 70 (839)
Q Consensus 11 ~LlvLDdv~~~~~~~~~~l~~~~~~-~~~gs-~iivTtr~~~v--------~~~~~~~~~~~~~~l~~~~ 70 (839)
-+||+|||..-+...-+.+...+.. ...|. .||+|++.... ...+.....++++++++++
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~ 161 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDAD 161 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHH
Confidence 4688999943221121223333321 12344 46666664322 1133334688999998765
No 134
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=33.80 E-value=90 Score=32.42 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=56.7
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEe-cChHHHHHhCCC-CeEeCCCCCcccccCcC----CCchH
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTT-RNLVVAERMGAD-PVYQLKELSDDDCLDFT----RHQSL 80 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTt-r~~~v~~~~~~~-~~~~~~~l~~~~~~~~~----~~~~~ 80 (839)
.+++-.+|+|++..-.......++..+..-. ...+|++| +-..+..+..+- ..+++.++++++..... .....
T Consensus 122 ~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~ 200 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL 200 (314)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc
Confidence 3567788999996554455666666665433 34555555 445555655443 58999999998875221 11111
Q ss_pred HHHHHHHHHHhCCChHHHHH
Q 036119 81 KEVGEQIVIKCGGLPLAAKT 100 (839)
Q Consensus 81 ~~~~~~i~~~c~glPlal~~ 100 (839)
......++..++|-|..+..
T Consensus 201 ~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 201 NINFPELLALAQGSPGAAIA 220 (314)
T ss_pred hhHHHHHHHHcCCCHHHHHH
Confidence 11135788899999965443
No 135
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=32.92 E-value=66 Score=33.74 Aligned_cols=94 Identities=13% Similarity=0.046 Sum_probs=61.9
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecCh-HHHHHhCCC-CeEeCCCCCcccccCcC--CCchHHHH
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNL-VVAERMGAD-PVYQLKELSDDDCLDFT--RHQSLKEV 83 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~~-~~~~~~~l~~~~~~~~~--~~~~~~~~ 83 (839)
+++-.+|+|++..-....-..++..+..-.++..+|.+|.+. .++.+..+- ..+.+.+++++++.... ......+.
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~~~~~ 186 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVTMSQDA 186 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccCCCHHH
Confidence 566678899986555555666777776656678888888775 466555432 47899999888865211 11122344
Q ss_pred HHHHHHHhCCChHHHHHH
Q 036119 84 GEQIVIKCGGLPLAAKTL 101 (839)
Q Consensus 84 ~~~i~~~c~glPlal~~~ 101 (839)
+..++..++|.|..+..+
T Consensus 187 a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 187 LLAALRLSAGAPGAALAL 204 (334)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 678899999999654433
No 136
>PRK06620 hypothetical protein; Validated
Probab=30.98 E-value=93 Score=30.19 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=33.4
Q ss_pred cEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecCh-------HHHHHhCCCCeEeCCCCCcccc
Q 036119 10 KFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNL-------VVAERMGADPVYQLKELSDDDC 71 (839)
Q Consensus 10 ~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~-------~v~~~~~~~~~~~~~~l~~~~~ 71 (839)
.-++++|||..-+...+-.+...+. ..|..||+|++.. +....+...-.++++++++++-
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~ 152 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELI 152 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHH
Confidence 3478889993211112222322232 3456899998742 2334444555788888877663
No 137
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=30.69 E-value=80 Score=32.47 Aligned_cols=94 Identities=17% Similarity=0.145 Sum_probs=57.0
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecC-hHHHHHhCC-CCeEeCCCCCcccccCcC-CCchHHHHH
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRN-LVVAERMGA-DPVYQLKELSDDDCLDFT-RHQSLKEVG 84 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~-~~v~~~~~~-~~~~~~~~l~~~~~~~~~-~~~~~~~~~ 84 (839)
+++-++|+||+..........+...+..-.+++.+|++|.+ ..+..+... ...+++.++++++..... ....-.+.+
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~~~~~~~a 168 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSKNKEKEYN 168 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHcCCChhHH
Confidence 47778889998555444566777777666667788776644 555555433 368999999888864211 111222445
Q ss_pred HHHHHHhCCChHHHHHH
Q 036119 85 EQIVIKCGGLPLAAKTL 101 (839)
Q Consensus 85 ~~i~~~c~glPlal~~~ 101 (839)
..++...+|.--|++.+
T Consensus 169 ~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 169 WFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 55666666633455443
No 138
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.57 E-value=69 Score=35.24 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=42.8
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecC-hHHHHHhCCC-CeEeCCCCCcccc
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRN-LVVAERMGAD-PVYQLKELSDDDC 71 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~-~~v~~~~~~~-~~~~~~~l~~~~~ 71 (839)
.++.-.+|+|+|..-....++.++..+........+|.+|.. ..+......- ..|++..++.++.
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i 185 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVL 185 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHH
Confidence 356778999999665556788888777654445665545544 4554444332 4789998887664
No 139
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=30.53 E-value=44 Score=30.72 Aligned_cols=59 Identities=14% Similarity=0.194 Sum_probs=39.1
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChH-HHHHhCCC-CeEeCCCC
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLV-VAERMGAD-PVYQLKEL 66 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~~~~~-~~~~~~~l 66 (839)
+++=.+|+||+..-....+..++..+..-..++++|++|++.+ |.....+- ..+.+.++
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE---
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCC
Confidence 4566789999977666778888888877778899999999865 55555433 35665554
No 140
>PRK08084 DNA replication initiation factor; Provisional
Probab=30.20 E-value=98 Score=30.57 Aligned_cols=60 Identities=20% Similarity=0.358 Sum_probs=34.9
Q ss_pred EEEEeccCCCC-hhhHhhhh-cccCC-CCCC-CEEEEEecCh---------HHHHHhCCCCeEeCCCCCcccc
Q 036119 12 LLVLDDVWNEN-YSRWSELS-CPFGA-GAAG-SKIVVTTRNL---------VVAERMGADPVYQLKELSDDDC 71 (839)
Q Consensus 12 LlvLDdv~~~~-~~~~~~l~-~~~~~-~~~g-s~iivTtr~~---------~v~~~~~~~~~~~~~~l~~~~~ 71 (839)
+|++|||-.-. ..+|+... ..+.. ...| .++|+||+.. ++...+.+..+++++++++++-
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~ 172 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEK 172 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHH
Confidence 78999993211 13455322 22221 1123 4788888743 4445566667899998887664
No 141
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.62 E-value=90 Score=35.93 Aligned_cols=88 Identities=11% Similarity=0.144 Sum_probs=52.9
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEe-cChHHHHHhCC-CCeEeCCCCCcccccCc-------CCCc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTT-RNLVVAERMGA-DPVYQLKELSDDDCLDF-------TRHQ 78 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTt-r~~~v~~~~~~-~~~~~~~~l~~~~~~~~-------~~~~ 78 (839)
+++-++|+|++..-....++.+...+..-..++.+|++| +.+.+...... ...++++.+++++.... ....
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 455678999996555556777777776655567766655 44555554433 35899999988875311 1111
Q ss_pred hHHHHHHHHHHHhCCCh
Q 036119 79 SLKEVGEQIVIKCGGLP 95 (839)
Q Consensus 79 ~~~~~~~~i~~~c~glP 95 (839)
.-.+.+..|++.++|-.
T Consensus 200 i~~~al~~La~~s~gdl 216 (614)
T PRK14971 200 AEPEALNVIAQKADGGM 216 (614)
T ss_pred CCHHHHHHHHHHcCCCH
Confidence 12244556666666644
No 142
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.78 E-value=1.1e+02 Score=32.80 Aligned_cols=65 Identities=12% Similarity=0.197 Sum_probs=37.8
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEec-ChHHHHHhC-CCCeEeCCCCCccccc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTR-NLVVAERMG-ADPVYQLKELSDDDCL 72 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr-~~~v~~~~~-~~~~~~~~~l~~~~~~ 72 (839)
+++-++|+|++..-....++.+...+........+|++|. .+.+..... ....++++++++++..
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~ 173 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIK 173 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHH
Confidence 4556799999854333456666665544444556665553 334433322 2247888888777643
No 143
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=28.72 E-value=1.3e+02 Score=33.92 Aligned_cols=88 Identities=10% Similarity=0.137 Sum_probs=54.1
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecCh-HHHHHhCC-CCeEeCCCCCcccccCc-------CCCc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNL-VVAERMGA-DPVYQLKELSDDDCLDF-------TRHQ 78 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~-~~~~~~~~l~~~~~~~~-------~~~~ 78 (839)
+++-++|+|++..-..+..+.+...+....+.+++|++|.+. .+...... ...+++.+++.++.... ....
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 456788999996655556777777776656678888777764 33222222 25889999988775311 1111
Q ss_pred hHHHHHHHHHHHhCCCh
Q 036119 79 SLKEVGEQIVIKCGGLP 95 (839)
Q Consensus 79 ~~~~~~~~i~~~c~glP 95 (839)
--.+.+..|++.++|-+
T Consensus 196 i~~~Al~~Ia~~s~Gdl 212 (535)
T PRK08451 196 YEPEALEILARSGNGSL 212 (535)
T ss_pred CCHHHHHHHHHHcCCcH
Confidence 12345556666666666
No 144
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=27.74 E-value=1.6e+02 Score=30.62 Aligned_cols=87 Identities=10% Similarity=0.094 Sum_probs=46.4
Q ss_pred CcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecCh-HHHHHh-CCCCeEeCCCCCcccccCcC-------CCch
Q 036119 9 KKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNL-VVAERM-GADPVYQLKELSDDDCLDFT-------RHQS 79 (839)
Q Consensus 9 k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~~~~l~~~~~~~~~-------~~~~ 79 (839)
.+-+|++|++..-.....+.+...+....+.+++|+++... .+.... .....++++++++++..... ...-
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i 181 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEI 181 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 45689999985433334455555555545567788777432 222211 11236788888877653110 0111
Q ss_pred HHHHHHHHHHHhCCCh
Q 036119 80 LKEVGEQIVIKCGGLP 95 (839)
Q Consensus 80 ~~~~~~~i~~~c~glP 95 (839)
-.+....+++.++|-+
T Consensus 182 ~~~al~~l~~~~~gd~ 197 (319)
T PRK00440 182 TDDALEAIYYVSEGDM 197 (319)
T ss_pred CHHHHHHHHHHcCCCH
Confidence 1345555666666655
No 145
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.61 E-value=1.3e+02 Score=34.62 Aligned_cols=64 Identities=13% Similarity=0.180 Sum_probs=43.9
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecC-hHHHHHhCC-CCeEeCCCCCcccc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRN-LVVAERMGA-DPVYQLKELSDDDC 71 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~-~~v~~~~~~-~~~~~~~~l~~~~~ 71 (839)
++.-++|+|+|..-....+..+...+..-....++|++|.+ ..+...... ...|+++.+++++.
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei 188 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETV 188 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHH
Confidence 45668899999766666778888777665556677766654 445443322 35899999988775
No 146
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=27.60 E-value=38 Score=33.01 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=27.9
Q ss_pred cEEEEEeccCCC-ChhhHhhhhcccCCCCCCCEEEEEecChHHHHHh
Q 036119 10 KFLLVLDDVWNE-NYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERM 55 (839)
Q Consensus 10 ~~LlvLDdv~~~-~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~ 55 (839)
--++|||||... +......+...+....+++.+||||.++.++..+
T Consensus 159 ~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 159 SPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp -SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 347899999431 1123445555555555678999999999988755
No 147
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=26.88 E-value=58 Score=33.06 Aligned_cols=83 Identities=13% Similarity=0.144 Sum_probs=52.5
Q ss_pred EEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHH-HHhCC-CCeEeCCCCCcccccC-------cCCCchHH
Q 036119 11 FLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVA-ERMGA-DPVYQLKELSDDDCLD-------FTRHQSLK 81 (839)
Q Consensus 11 ~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~-~~~~~-~~~~~~~~l~~~~~~~-------~~~~~~~~ 81 (839)
-.+|||++..-..+.|..+......+....|.|..+-.-+.. ..... ..-|+.+.|.+++... -...+-..
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~ 210 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD 210 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH
Confidence 357889997777788999988888777778877766654443 22222 1478888888877541 11111223
Q ss_pred HHHHHHHHHhCC
Q 036119 82 EVGEQIVIKCGG 93 (839)
Q Consensus 82 ~~~~~i~~~c~g 93 (839)
+..+.|++.++|
T Consensus 211 ~al~~I~~~S~G 222 (346)
T KOG0989|consen 211 DALKLIAKISDG 222 (346)
T ss_pred HHHHHHHHHcCC
Confidence 455566666655
No 148
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.81 E-value=1.5e+02 Score=34.13 Aligned_cols=92 Identities=12% Similarity=0.095 Sum_probs=53.8
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEe-cChHHHHHhC-CCCeEeCCCCCcccccCcC-------CCc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTT-RNLVVAERMG-ADPVYQLKELSDDDCLDFT-------RHQ 78 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTt-r~~~v~~~~~-~~~~~~~~~l~~~~~~~~~-------~~~ 78 (839)
+++-++|+||+..-.....+.+...+..-.+.+.+|++| +.+.+..... ....+++..++.++..... ...
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~ 205 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ 205 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 455578999996554455677777776655556665555 4455554433 2358999999887753110 111
Q ss_pred hHHHHHHHHHHHhCCCh-HHHH
Q 036119 79 SLKEVGEQIVIKCGGLP-LAAK 99 (839)
Q Consensus 79 ~~~~~~~~i~~~c~glP-lal~ 99 (839)
--.+.+..+++.++|-. .|+.
T Consensus 206 I~~eal~~La~~s~Gdlr~al~ 227 (620)
T PRK14954 206 IDADALQLIARKAQGSMRDAQS 227 (620)
T ss_pred CCHHHHHHHHHHhCCCHHHHHH
Confidence 12345566777777633 3433
No 149
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.45 E-value=1.8e+02 Score=33.45 Aligned_cols=64 Identities=14% Similarity=0.183 Sum_probs=42.8
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChH-HHHHh-CCCCeEeCCCCCcccc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLV-VAERM-GADPVYQLKELSDDDC 71 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~~~~l~~~~~ 71 (839)
+++-++|+|+|..-.....+.+...+.....+.++|++|.+.. +.... .-...++++.++.++.
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI 182 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEI 182 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHH
Confidence 5677899999955444566777777765556678888887643 33222 1225888888888775
No 150
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=25.44 E-value=1e+02 Score=31.49 Aligned_cols=59 Identities=12% Similarity=0.138 Sum_probs=41.5
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecCh-HHHHHhCCC-CeEeCCC
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNL-VVAERMGAD-PVYQLKE 65 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~~-~~~~~~~ 65 (839)
.+++-.+|+||+..-....+..++..+..-.++..+|++|.+. .|+.+..+- ..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~ 162 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK 162 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC
Confidence 3566788899997666667888888887666678888877665 566666543 4666654
No 151
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=25.32 E-value=1.3e+02 Score=33.14 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=52.9
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecC-hHHHHHhCC-CCeEeCCCCCcccccCc-------CCCc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRN-LVVAERMGA-DPVYQLKELSDDDCLDF-------TRHQ 78 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~-~~v~~~~~~-~~~~~~~~l~~~~~~~~-------~~~~ 78 (839)
+++-++|+|++..-.....+.+...+.....+..+|++|.+ +.+...... ...++++.+++++.... ....
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 56778899998443334455666666554456677766644 334333322 24789999988875311 1111
Q ss_pred hHHHHHHHHHHHhCCCh-HHHHHH
Q 036119 79 SLKEVGEQIVIKCGGLP-LAAKTL 101 (839)
Q Consensus 79 ~~~~~~~~i~~~c~glP-lal~~~ 101 (839)
--.+.+..+++.++|-+ .|+..+
T Consensus 200 i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 200 TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12345566677776644 344433
No 152
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.81 E-value=1.6e+02 Score=35.31 Aligned_cols=95 Identities=15% Similarity=0.073 Sum_probs=61.8
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecCh-HHHHHhCC-CCeEeCCCCCcccccCcC-------CC
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNL-VVAERMGA-DPVYQLKELSDDDCLDFT-------RH 77 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~-~~~~~~~~l~~~~~~~~~-------~~ 77 (839)
.+++-++|+|++..-....++.|+..+.......++|++|.+. .+...... ...|++++++.++..... ..
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI 196 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL 196 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 4677899999996655566777777776655567777766654 44433322 258999999998875221 11
Q ss_pred chHHHHHHHHHHHhCCCh-HHHHHH
Q 036119 78 QSLKEVGEQIVIKCGGLP-LAAKTL 101 (839)
Q Consensus 78 ~~~~~~~~~i~~~c~glP-lal~~~ 101 (839)
.--.+....|++.++|-| .|+..+
T Consensus 197 ~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 197 PFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 112356677888888877 444443
No 153
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=22.84 E-value=1.9e+02 Score=33.54 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=38.4
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecCh-HHHHHhCC-CCeEeCCCCCcccc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNL-VVAERMGA-DPVYQLKELSDDDC 71 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~-~~~~~~~~l~~~~~ 71 (839)
+++-++|+|+|..-.......++..+..-....++|++|.+. .+...... ...|++..++.++.
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI 183 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQV 183 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHH
Confidence 566789999995443334556666665444456777777654 33322211 13677777877764
No 154
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.32 E-value=2e+02 Score=31.91 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=42.7
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecC-hHHHHHhCC-CCeEeCCCCCcccc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRN-LVVAERMGA-DPVYQLKELSDDDC 71 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~-~~v~~~~~~-~~~~~~~~l~~~~~ 71 (839)
+++-++|+|+|..-.....+.+...+..-.+..++|++|.. +.+...... ...++++.++.++.
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el 180 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKL 180 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHH
Confidence 56678999999554445577777777666666777766654 455544432 25788888877764
No 155
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=21.80 E-value=2.3e+02 Score=33.23 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=41.7
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEe-cChHHHHHhCC-CCeEeCCCCCccccc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTT-RNLVVAERMGA-DPVYQLKELSDDDCL 72 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTt-r~~~v~~~~~~-~~~~~~~~l~~~~~~ 72 (839)
+++-++|+|+|..-....+..+...+..-.....+|++| +...+...... ...+++.+++.++..
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~ 183 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIV 183 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHH
Confidence 566788999995554456777777766544455555444 44555544322 258899988887753
No 156
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=21.15 E-value=2.3e+02 Score=29.39 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=25.5
Q ss_pred CCcEEEEEeccCCC-ChhhHhhhhcccCCCCCCCEEEEEecChH
Q 036119 8 GKKFLLVLDDVWNE-NYSRWSELSCPFGAGAAGSKIVVTTRNLV 50 (839)
Q Consensus 8 ~k~~LlvLDdv~~~-~~~~~~~l~~~~~~~~~gs~iivTtr~~~ 50 (839)
+.+-+||+||+... .....+.+...+.....++++|+||...+
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 34567889999543 11222334333444556789999997653
No 157
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=20.44 E-value=2.9e+02 Score=30.05 Aligned_cols=92 Identities=14% Similarity=-0.050 Sum_probs=43.3
Q ss_pred CcceEecccccccccccc--cCcccccccccccccccCCc-cCCCC---------CCCCCcceEEecCCCCCCcc--ccc
Q 036119 684 KLTELTIYDCENLKALPN--CMHNLTSLLNLKISECPSVV-SFPED---------GFPTNLQSLDVHDLKISKPL--LEW 749 (839)
Q Consensus 684 ~L~~L~l~~~~~l~~lp~--~l~~l~~L~~L~l~~~~~~~-~~~~~---------~~~~~L~~L~l~~~~~~~~~--~~~ 749 (839)
.+++|.+++|..-+..-. .+..-++.+.+++.+-.... ..+.. .-..-+..+.++.|+..... ..|
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 577888877765443322 23334566666665432210 11100 11123566777777665221 122
Q ss_pred cCCCccccceEEEecCCCCCcCCCCC
Q 036119 750 GSNRFTSLRRFTIWGGCPDLVSPPPF 775 (839)
Q Consensus 750 ~~~~l~~L~~l~l~~~~~~~~~~~~~ 775 (839)
....-+.++.++++|+......-+.+
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~l 460 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPL 460 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcC
Confidence 33334556666666655444443333
No 158
>PRK10536 hypothetical protein; Provisional
Probab=20.39 E-value=1.2e+02 Score=30.23 Aligned_cols=45 Identities=13% Similarity=0.246 Sum_probs=31.0
Q ss_pred hcCCCcE---EEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHH
Q 036119 5 QLFGKKF---LLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVA 52 (839)
Q Consensus 5 ~l~~k~~---LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~ 52 (839)
+++++.+ +||+|..-+-+..+...+.... +.|||||+|---.|+-
T Consensus 169 ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 169 YMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GENVTVIVNGDITQCD 216 (262)
T ss_pred HhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCCCEEEEeCChhhcc
Confidence 4556555 9999999776665555555444 6889999987654443
Done!