Query 036119
Match_columns 839
No_of_seqs 450 out of 3650
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 16:17:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.6E-44 1.9E-48 420.8 27.9 531 290-837 96-740 (768)
2 3rgz_A Protein brassinosteroid 100.0 6.2E-42 2.1E-46 403.4 33.2 529 286-835 69-715 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 8.8E-37 3E-41 356.9 36.7 553 236-835 23-620 (680)
4 3t6q_A CD180 antigen; protein- 100.0 2.6E-36 8.9E-41 348.1 34.8 478 295-836 34-559 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 4.1E-36 1.4E-40 346.5 34.5 482 288-836 50-557 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 4.7E-36 1.6E-40 350.8 35.5 536 238-814 49-622 (680)
7 3vq2_A TLR4, TOLL-like recepto 100.0 5.3E-35 1.8E-39 337.2 27.7 154 236-404 30-195 (606)
8 3t6q_A CD180 antigen; protein- 100.0 1.9E-34 6.6E-39 332.5 32.1 505 236-812 31-558 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1E-31 3.6E-36 319.7 38.7 472 293-835 23-537 (844)
10 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-32 3.7E-37 311.5 24.4 423 294-835 21-479 (520)
11 3j0a_A TOLL-like receptor 5; m 100.0 2.1E-31 7E-36 317.2 36.5 495 262-836 23-559 (844)
12 2z81_A CD282 antigen, TOLL-lik 100.0 7.8E-32 2.7E-36 306.9 29.0 449 294-814 26-510 (549)
13 2z81_A CD282 antigen, TOLL-lik 100.0 3.1E-31 1E-35 302.0 33.3 468 296-836 7-509 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 2.2E-31 7.7E-36 304.8 32.0 435 288-814 46-531 (570)
15 4eco_A Uncharacterized protein 100.0 7.1E-32 2.4E-36 310.1 22.8 431 294-838 81-633 (636)
16 4ecn_A Leucine-rich repeat pro 100.0 5.7E-31 1.9E-35 306.6 30.0 429 294-838 323-873 (876)
17 2z63_A TOLL-like receptor 4, v 100.0 1.5E-30 5E-35 298.1 30.8 473 294-836 28-530 (570)
18 1jl5_A Outer protein YOPM; leu 100.0 8.4E-31 2.9E-35 287.4 26.3 416 293-835 10-427 (454)
19 4ecn_A Leucine-rich repeat pro 100.0 5.1E-31 1.7E-35 307.0 24.0 105 636-744 729-841 (876)
20 4eco_A Uncharacterized protein 100.0 4.7E-31 1.6E-35 303.3 21.2 104 636-743 489-600 (636)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-30 3.9E-35 294.9 20.5 432 263-812 21-479 (520)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-29 5.2E-34 287.9 27.9 429 294-835 52-508 (562)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-28 6.7E-33 278.8 25.3 383 263-743 52-463 (562)
24 4g8a_A TOLL-like receptor 4; l 100.0 2E-27 6.7E-32 276.3 32.7 496 295-835 53-578 (635)
25 2a5y_B CED-4; apoptosis; HET: 100.0 3.4E-29 1.2E-33 281.3 14.3 206 2-222 235-473 (549)
26 3v47_A TOLL-like receptor 5B a 100.0 2.6E-27 8.9E-32 262.7 27.7 265 465-744 129-409 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 2.6E-27 8.7E-32 259.7 24.9 392 262-744 10-430 (454)
28 4g8a_A TOLL-like receptor 4; l 99.9 1E-26 3.5E-31 270.2 24.8 439 286-747 68-559 (635)
29 3v47_A TOLL-like receptor 5B a 99.9 2.5E-26 8.5E-31 254.8 24.6 360 294-725 30-413 (455)
30 3bz5_A Internalin-J, INLJ; leu 99.9 2.1E-25 7.1E-30 244.8 27.1 100 290-401 38-138 (457)
31 1o6v_A Internalin A; bacterial 99.9 2.6E-25 8.7E-30 246.6 27.8 325 293-746 45-369 (466)
32 3bz5_A Internalin-J, INLJ; leu 99.9 3.8E-24 1.3E-28 234.8 24.7 355 258-748 37-392 (457)
33 1o6v_A Internalin A; bacterial 99.9 1.5E-23 5.2E-28 232.3 26.7 347 432-819 44-392 (466)
34 4fmz_A Internalin; leucine ric 99.9 1.5E-23 5E-28 223.4 22.4 306 291-743 41-346 (347)
35 3o6n_A APL1; leucine-rich repe 99.9 2E-23 6.8E-28 226.0 23.7 310 292-744 43-353 (390)
36 2id5_A Lingo-1, leucine rich r 99.9 9.9E-23 3.4E-27 227.0 28.0 318 297-743 14-333 (477)
37 3oja_B Anopheles plasmodium-re 99.9 3.5E-23 1.2E-27 236.5 24.2 309 293-744 50-359 (597)
38 4fmz_A Internalin; leucine ric 99.9 4.2E-23 1.4E-27 219.8 21.7 301 465-835 44-344 (347)
39 2id5_A Lingo-1, leucine rich r 99.9 1.5E-22 5.3E-27 225.5 26.7 295 294-694 32-331 (477)
40 1vt4_I APAF-1 related killer D 99.9 3.9E-23 1.3E-27 233.6 3.8 176 7-214 242-437 (1221)
41 3o6n_A APL1; leucine-rich repe 99.9 7.5E-21 2.6E-25 205.7 21.4 302 465-812 45-350 (390)
42 3oja_B Anopheles plasmodium-re 99.9 1.8E-20 6.1E-25 214.1 22.5 302 465-812 51-356 (597)
43 1ogq_A PGIP-2, polygalacturona 99.8 2.2E-21 7.6E-26 202.3 12.7 249 465-742 50-303 (313)
44 2ft3_A Biglycan; proteoglycan, 99.8 1.4E-19 4.7E-24 191.0 25.6 292 466-812 34-331 (332)
45 1xku_A Decorin; proteoglycan, 99.8 1.2E-19 4E-24 191.4 25.0 129 636-765 193-329 (330)
46 3ogk_B Coronatine-insensitive 99.8 1.6E-22 5.4E-27 232.4 3.1 206 285-520 103-326 (592)
47 2ft3_A Biglycan; proteoglycan, 99.8 9.4E-20 3.2E-24 192.2 22.9 130 635-765 193-330 (332)
48 1ogq_A PGIP-2, polygalacturona 99.8 6.7E-21 2.3E-25 198.6 13.8 179 538-744 50-235 (313)
49 3sfz_A APAF-1, apoptotic pepti 99.8 3E-21 1E-25 242.1 11.5 197 2-221 227-453 (1249)
50 3ogk_B Coronatine-insensitive 99.8 1.3E-22 4.5E-27 233.1 -1.4 101 465-569 220-326 (592)
51 1xku_A Decorin; proteoglycan, 99.8 5.8E-19 2E-23 186.1 25.3 173 612-788 145-330 (330)
52 1z7x_W Ribonuclease inhibitor; 99.8 1.1E-22 3.7E-27 226.0 -4.4 366 286-744 20-441 (461)
53 3g06_A SSPH2 (leucine-rich rep 99.8 1.3E-18 4.4E-23 196.3 23.7 72 294-379 40-111 (622)
54 4fcg_A Uncharacterized protein 99.8 9.7E-19 3.3E-23 183.3 18.8 230 465-742 81-313 (328)
55 4fcg_A Uncharacterized protein 99.8 6.4E-19 2.2E-23 184.7 16.8 220 561-811 81-311 (328)
56 1z7x_W Ribonuclease inhibitor; 99.8 1.2E-21 4.2E-26 217.5 -7.7 369 465-835 3-438 (461)
57 2p1m_B Transport inhibitor res 99.8 3.1E-21 1.1E-25 221.8 -4.7 88 655-743 428-519 (594)
58 3g06_A SSPH2 (leucine-rich rep 99.8 2.8E-17 9.5E-22 185.4 25.8 91 466-571 41-131 (622)
59 3zyi_A Leucine-rich repeat-con 99.8 1.3E-17 4.5E-22 183.8 20.2 241 564-835 57-301 (452)
60 3zyj_A Leucine-rich repeat-con 99.8 2.8E-17 9.6E-22 180.4 21.5 241 563-811 45-289 (440)
61 2z66_A Variable lymphocyte rec 99.8 1.8E-17 6.1E-22 172.7 18.2 177 612-811 78-258 (306)
62 2z80_A TOLL-like receptor 2, v 99.7 8.1E-18 2.8E-22 179.1 15.4 267 542-835 35-312 (353)
63 3zyi_A Leucine-rich repeat-con 99.7 3.4E-17 1.1E-21 180.5 19.3 227 463-719 73-302 (452)
64 2p1m_B Transport inhibitor res 99.7 1.7E-19 6E-24 207.2 0.2 133 261-400 103-245 (594)
65 3zyj_A Leucine-rich repeat-con 99.7 7.4E-17 2.5E-21 177.1 20.6 231 550-789 54-291 (440)
66 1z6t_A APAF-1, apoptotic prote 99.7 1.8E-18 6.2E-23 197.7 8.0 191 3-217 228-449 (591)
67 2z66_A Variable lymphocyte rec 99.7 3.2E-17 1.1E-21 170.7 16.8 133 612-744 126-262 (306)
68 2z80_A TOLL-like receptor 2, v 99.7 5.8E-17 2E-21 172.4 18.7 255 463-746 50-317 (353)
69 1ozn_A Reticulon 4 receptor; N 99.7 4.6E-17 1.6E-21 167.5 17.2 201 611-812 31-236 (285)
70 1wwl_A Monocyte differentiatio 99.7 1E-18 3.5E-23 182.2 4.1 198 634-836 94-308 (312)
71 1ozn_A Reticulon 4 receptor; N 99.7 7.2E-17 2.4E-21 166.1 17.8 109 635-743 129-238 (285)
72 3o53_A Protein LRIM1, AGAP0063 99.7 2.7E-17 9.1E-22 171.9 9.9 208 589-811 35-247 (317)
73 1wwl_A Monocyte differentiatio 99.7 4.4E-18 1.5E-22 177.4 3.4 243 537-812 42-307 (312)
74 3o53_A Protein LRIM1, AGAP0063 99.7 2.5E-16 8.6E-21 164.5 16.2 225 283-574 23-250 (317)
75 2xwt_C Thyrotropin receptor; s 99.7 3.3E-16 1.1E-20 156.4 15.5 200 610-837 29-239 (239)
76 3oja_A Leucine-rich immune mol 99.7 1.3E-16 4.4E-21 176.6 13.1 209 589-812 35-248 (487)
77 3oja_A Leucine-rich immune mol 99.7 6.1E-16 2.1E-20 171.1 17.7 217 290-573 30-249 (487)
78 2o6q_A Variable lymphocyte rec 99.7 2.4E-15 8.2E-20 153.1 19.3 174 636-812 38-216 (270)
79 4glp_A Monocyte differentiatio 99.7 2.6E-16 8.8E-21 163.9 12.4 196 614-836 93-306 (310)
80 2z62_A TOLL-like receptor 4, v 99.7 9.7E-16 3.3E-20 156.8 16.3 199 611-812 27-235 (276)
81 2z62_A TOLL-like receptor 4, v 99.6 2.5E-15 8.5E-20 153.7 15.6 196 635-835 28-235 (276)
82 1p9a_G Platelet glycoprotein I 99.6 5.9E-15 2E-19 151.4 18.3 171 635-812 31-206 (290)
83 2xwt_C Thyrotropin receptor; s 99.6 4.4E-15 1.5E-19 148.2 15.4 209 571-813 20-238 (239)
84 3rfs_A Internalin B, repeat mo 99.6 3.8E-15 1.3E-19 151.7 14.7 184 612-802 63-247 (272)
85 2o6q_A Variable lymphocyte rec 99.6 1.8E-14 6E-19 146.7 19.2 176 562-743 17-194 (270)
86 4glp_A Monocyte differentiatio 99.6 4E-15 1.4E-19 154.9 14.6 195 589-812 92-305 (310)
87 3rfs_A Internalin B, repeat mo 99.6 4.1E-14 1.4E-18 144.0 17.6 194 612-818 41-239 (272)
88 1p9a_G Platelet glycoprotein I 99.6 6.1E-14 2.1E-18 143.8 18.1 197 559-790 8-208 (290)
89 3m19_A Variable lymphocyte rec 99.6 5.3E-14 1.8E-18 141.3 16.9 110 635-744 35-145 (251)
90 1h6u_A Internalin H; cell adhe 99.6 2.4E-14 8.1E-19 148.5 14.2 193 611-819 40-234 (308)
91 1h6u_A Internalin H; cell adhe 99.5 2.6E-14 8.9E-19 148.2 13.6 190 588-790 41-230 (308)
92 4ay9_X Follicle-stimulating ho 99.5 1.3E-13 4.6E-18 145.9 19.2 156 384-570 98-255 (350)
93 3m19_A Variable lymphocyte rec 99.5 1.5E-13 5.1E-18 138.1 17.5 171 636-812 15-190 (251)
94 2ast_B S-phase kinase-associat 99.5 3.9E-15 1.3E-19 157.3 5.8 247 466-749 48-312 (336)
95 2ast_B S-phase kinase-associat 99.5 9.6E-16 3.3E-20 162.0 0.0 240 588-834 47-303 (336)
96 4ay9_X Follicle-stimulating ho 99.5 4E-13 1.4E-17 142.2 19.8 228 550-810 20-255 (350)
97 2ca6_A RAN GTPase-activating p 99.5 1.1E-15 3.8E-20 164.7 -2.0 87 635-721 216-317 (386)
98 3cvr_A Invasion plasmid antige 99.5 6.8E-13 2.3E-17 147.7 16.5 178 613-815 60-244 (571)
99 2o6s_A Variable lymphocyte rec 99.4 7E-13 2.4E-17 129.0 14.4 167 636-812 29-196 (208)
100 3cvr_A Invasion plasmid antige 99.4 6.6E-13 2.3E-17 147.8 15.5 184 589-800 60-253 (571)
101 4ezg_A Putative uncharacterize 99.4 5.7E-13 1.9E-17 128.2 11.2 128 612-742 66-193 (197)
102 4ezg_A Putative uncharacterize 99.4 9.1E-13 3.1E-17 126.8 11.6 130 612-744 44-173 (197)
103 1h6t_A Internalin B; cell adhe 99.4 1.2E-12 4.2E-17 134.2 12.4 60 292-361 44-103 (291)
104 1h6t_A Internalin B; cell adhe 99.4 1.3E-12 4.3E-17 134.1 12.4 172 612-819 46-217 (291)
105 2ca6_A RAN GTPase-activating p 99.4 3E-14 1E-18 153.4 -0.1 110 635-744 159-288 (386)
106 3goz_A Leucine-rich repeat-con 99.4 5.8E-14 2E-18 149.5 1.8 109 636-744 168-298 (362)
107 3goz_A Leucine-rich repeat-con 99.4 3.7E-14 1.3E-18 151.1 -0.9 225 587-811 21-294 (362)
108 1m9s_A Internalin B; cell inva 99.3 1.2E-12 4.2E-17 147.4 9.9 174 633-819 41-214 (605)
109 2v9t_B SLIT homolog 2 protein 99.3 1.3E-11 4.4E-16 120.7 14.8 128 615-744 14-142 (220)
110 1m9s_A Internalin B; cell inva 99.3 5.3E-12 1.8E-16 142.2 13.2 124 612-743 65-188 (605)
111 2o6s_A Variable lymphocyte rec 99.3 5.3E-12 1.8E-16 122.7 9.9 132 612-749 52-184 (208)
112 2v70_A SLIT-2, SLIT homolog 2 99.3 1.8E-11 6.3E-16 119.6 13.4 130 614-745 13-144 (220)
113 2v9t_B SLIT homolog 2 protein 99.3 1.8E-11 6E-16 119.8 12.9 134 610-743 30-165 (220)
114 3e6j_A Variable lymphocyte rec 99.3 2.8E-11 9.7E-16 119.2 13.7 133 611-744 39-173 (229)
115 3e6j_A Variable lymphocyte rec 99.3 2.4E-11 8.1E-16 119.8 12.7 130 613-745 20-150 (229)
116 1xeu_A Internalin C; cellular 99.2 8.9E-12 3E-16 125.6 8.7 163 613-811 20-182 (263)
117 2v70_A SLIT-2, SLIT homolog 2 99.2 2.8E-11 9.7E-16 118.3 12.0 134 611-744 31-167 (220)
118 2xot_A Amphoterin-induced prot 99.2 1.6E-11 5.3E-16 130.5 10.7 132 611-743 38-176 (361)
119 2xot_A Amphoterin-induced prot 99.2 2.5E-11 8.5E-16 128.9 10.6 172 564-743 21-202 (361)
120 1xeu_A Internalin C; cellular 99.2 6.9E-11 2.3E-15 119.1 12.0 62 290-361 37-98 (263)
121 2ell_A Acidic leucine-rich nuc 99.2 2.7E-11 9.4E-16 113.1 8.4 137 658-819 23-164 (168)
122 4b8c_D Glucose-repressible alc 99.2 8.8E-12 3E-16 144.4 3.6 109 635-747 224-333 (727)
123 2je0_A Acidic leucine-rich nuc 99.1 1.2E-11 4.2E-16 112.8 3.3 109 635-745 17-128 (149)
124 2ell_A Acidic leucine-rich nuc 99.1 2.5E-11 8.5E-16 113.3 5.4 109 635-745 24-135 (168)
125 1w8a_A SLIT protein; signaling 99.1 1.6E-10 5.4E-15 110.3 11.0 129 615-745 11-141 (192)
126 2je0_A Acidic leucine-rich nuc 99.1 5.2E-11 1.8E-15 108.6 4.6 85 658-744 16-102 (149)
127 1dce_A Protein (RAB geranylger 99.1 2.5E-12 8.4E-17 144.1 -5.2 188 612-830 349-566 (567)
128 2wfh_A SLIT homolog 2 protein 99.0 7.9E-10 2.7E-14 105.3 11.1 125 616-743 14-139 (193)
129 2o6r_A Variable lymphocyte rec 99.0 1.8E-09 6.1E-14 101.6 12.1 131 614-746 9-140 (177)
130 1w8a_A SLIT protein; signaling 99.0 1E-09 3.4E-14 104.7 10.3 112 611-722 28-141 (192)
131 1a9n_A U2A', U2A'; complex (nu 99.0 1.9E-10 6.6E-15 108.1 3.8 126 612-743 19-153 (176)
132 4b8c_D Glucose-repressible alc 99.0 1.9E-10 6.6E-15 133.1 3.7 159 640-811 206-369 (727)
133 3sb4_A Hypothetical leucine ri 98.9 6.3E-09 2.2E-13 108.8 13.2 234 589-830 26-327 (329)
134 2wfh_A SLIT homolog 2 protein 98.9 7.6E-09 2.6E-13 98.5 11.3 110 610-720 29-139 (193)
135 1a9n_A U2A', U2A'; complex (nu 98.9 1.1E-09 3.7E-14 102.9 4.5 107 633-744 17-127 (176)
136 3sb4_A Hypothetical leucine ri 98.9 4.4E-08 1.5E-12 102.3 17.1 99 658-761 225-327 (329)
137 1ds9_A Outer arm dynein; leuci 98.8 1.8E-11 6.3E-16 117.7 -8.4 106 635-744 18-129 (198)
138 2o6r_A Variable lymphocyte rec 98.8 1.2E-08 4E-13 95.9 10.4 112 611-722 27-139 (177)
139 1dce_A Protein (RAB geranylger 98.8 4.1E-09 1.4E-13 118.0 8.3 104 637-745 443-548 (567)
140 3g39_A Variable lymphocyte rec 98.8 1.9E-08 6.6E-13 93.5 9.9 104 638-744 12-116 (170)
141 3g39_A Variable lymphocyte rec 98.7 2.2E-08 7.5E-13 93.1 9.0 107 613-721 10-116 (170)
142 2r9u_A Variable lymphocyte rec 98.7 3.5E-08 1.2E-12 92.0 10.1 101 639-743 16-118 (174)
143 2r9u_A Variable lymphocyte rec 98.7 4.4E-08 1.5E-12 91.4 9.0 105 615-721 15-119 (174)
144 4fdw_A Leucine rich hypothetic 98.6 2.4E-06 8.3E-11 91.1 20.9 146 611-763 179-331 (401)
145 1ds9_A Outer arm dynein; leuci 98.5 4E-09 1.4E-13 101.2 -3.3 106 288-403 42-153 (198)
146 4fdw_A Leucine rich hypothetic 98.5 7E-06 2.4E-10 87.5 21.3 85 654-743 266-358 (401)
147 2ifg_A High affinity nerve gro 98.4 4.5E-07 1.6E-11 95.5 9.4 93 650-743 23-116 (347)
148 4fs7_A Uncharacterized protein 98.3 5.9E-05 2E-09 80.7 23.3 39 288-328 65-104 (394)
149 3un9_A NLR family member X1; l 98.3 8.2E-09 2.8E-13 109.1 -7.8 132 612-743 72-224 (372)
150 3un9_A NLR family member X1; l 98.3 3.1E-08 1.1E-12 104.6 -4.5 133 612-744 101-253 (372)
151 2ifg_A High affinity nerve gro 98.2 1.6E-06 5.6E-11 91.2 8.4 93 600-694 20-114 (347)
152 2ra8_A Uncharacterized protein 98.1 1.4E-06 4.8E-11 91.0 3.4 91 651-744 164-266 (362)
153 4fs7_A Uncharacterized protein 98.1 0.00031 1.1E-08 75.0 21.8 145 656-810 227-375 (394)
154 2ra8_A Uncharacterized protein 97.9 2.4E-06 8.1E-11 89.3 2.5 12 560-571 138-149 (362)
155 4gt6_A Cell surface protein; l 97.7 0.0018 6.3E-08 68.9 20.3 103 654-763 260-365 (394)
156 3e4g_A ATP synthase subunit S, 97.7 1.5E-05 5.2E-10 72.5 3.1 87 294-404 61-153 (176)
157 3e4g_A ATP synthase subunit S, 97.6 2.6E-05 9E-10 71.0 3.3 38 466-503 62-99 (176)
158 4gt6_A Cell surface protein; l 97.5 0.009 3.1E-07 63.5 21.3 80 678-762 260-341 (394)
159 3rw6_A Nuclear RNA export fact 97.3 0.00015 5E-09 71.5 5.0 71 286-365 162-237 (267)
160 1io0_A Tropomodulin; LRR prote 97.2 2.2E-05 7.5E-10 73.7 -2.3 90 654-743 60-164 (185)
161 4h09_A Hypothetical leucine ri 97.2 0.045 1.6E-06 57.7 23.4 102 655-762 213-317 (379)
162 4h09_A Hypothetical leucine ri 97.2 0.034 1.1E-06 58.7 21.6 119 635-760 217-338 (379)
163 2qen_A Walker-type ATPase; unk 97.1 0.00057 2E-08 71.6 7.3 188 9-212 128-347 (350)
164 1io0_A Tropomodulin; LRR prote 97.1 8.5E-05 2.9E-09 69.6 0.1 109 612-720 36-164 (185)
165 2fna_A Conserved hypothetical 97.1 0.0015 5.1E-08 68.6 9.7 188 9-212 137-355 (357)
166 3rw6_A Nuclear RNA export fact 97.0 0.00025 8.6E-09 69.9 3.0 64 658-723 169-236 (267)
167 1w5s_A Origin recognition comp 96.4 0.0051 1.7E-07 66.0 7.9 186 8-197 137-372 (412)
168 1njg_A DNA polymerase III subu 95.9 0.012 4.2E-07 57.5 7.1 97 7-103 124-229 (250)
169 3rfe_A Platelet glycoprotein I 92.9 0.12 4.2E-06 44.4 5.2 51 298-357 12-65 (130)
170 2chg_A Replication factor C sm 92.2 0.16 5.4E-06 48.5 5.7 93 8-100 101-202 (226)
171 3rfe_A Platelet glycoprotein I 91.8 0.19 6.6E-06 43.1 5.1 35 684-718 32-66 (130)
172 1pgv_A TMD-1, tropomodulin TMD 90.9 0.092 3.2E-06 48.6 2.2 35 683-717 98-136 (197)
173 1sxj_B Activator 1 37 kDa subu 89.3 0.46 1.6E-05 48.4 6.3 97 7-103 105-211 (323)
174 1pgv_A TMD-1, tropomodulin TMD 88.3 0.38 1.3E-05 44.5 4.2 43 287-330 34-82 (197)
175 1hqc_A RUVB; extended AAA-ATPa 87.7 0.65 2.2E-05 47.3 6.2 184 8-195 89-324 (324)
176 1fnn_A CDC6P, cell division co 87.7 2.6 9E-05 44.0 11.1 201 8-218 124-385 (389)
177 2qby_B CDC6 homolog 3, cell di 86.1 1.2 4E-05 46.7 7.2 114 3-120 127-269 (384)
178 1iqp_A RFCS; clamp loader, ext 82.7 2.1 7.2E-05 43.4 7.1 94 8-101 109-211 (327)
179 2v1u_A Cell division control p 75.6 1.8 6.3E-05 45.1 4.1 113 7-120 128-275 (387)
180 1jr3_A DNA polymerase III subu 73.9 4.7 0.00016 41.7 6.7 95 7-101 117-220 (373)
181 2chq_A Replication factor C sm 72.7 11 0.00036 37.9 8.9 90 8-97 101-199 (319)
182 2qby_A CDC6 homolog 1, cell di 69.3 2.7 9.1E-05 43.8 3.4 112 8-119 127-270 (386)
183 1d2n_A N-ethylmaleimide-sensit 60.5 37 0.0013 32.9 9.7 112 7-119 122-259 (272)
184 3bos_A Putative DNA replicatio 55.9 5.6 0.00019 37.9 2.7 90 9-98 104-213 (242)
185 1a5t_A Delta prime, HOLB; zinc 54.9 11 0.00039 38.1 5.0 93 8-100 107-203 (334)
186 1sxj_E Activator 1 40 kDa subu 42.6 20 0.00069 36.5 4.6 64 9-72 134-199 (354)
187 1jr3_D DNA polymerase III, del 39.8 51 0.0017 33.3 7.1 65 7-71 74-147 (343)
188 2z4s_A Chromosomal replication 33.2 27 0.00093 36.9 3.7 88 9-96 194-300 (440)
189 1sxj_D Activator 1 41 kDa subu 28.8 88 0.003 31.4 6.8 92 8-99 132-232 (353)
190 2vda_B Maltoporin; sugar trans 26.6 40 0.0014 18.5 1.8 17 92-108 9-25 (28)
191 2gno_A DNA polymerase III, gam 23.7 31 0.0011 34.3 2.0 63 8-71 81-144 (305)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.6e-44 Score=420.84 Aligned_cols=531 Identities=17% Similarity=0.097 Sum_probs=346.2
Q ss_pred hcCCCceeEEEeCCCcccccccc--cccCcCcCcEeEecCccccccccCCC-CC-------------------C---ccc
Q 036119 290 LNHLPRLRVFSLCGYRNIFNLPN--EIGNLKHLRCLNLSRTKWEEWIPCGA-GQ-------------------E---VDE 344 (839)
Q Consensus 290 ~~~l~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~L~~~~~~~~~p~~~-~~-------------------~---~~~ 344 (839)
|..+++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+.+|..+ .. . ..+
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 175 (768)
T 3rgz_A 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175 (768)
T ss_dssp CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTT
T ss_pred hccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhc
Confidence 45555555555555553344444 55555555555555555544444332 22 0 011
Q ss_pred cCCCccEEeccCccccccCCC-cCCCCccEEeecccC--cccccCCCCCCccEEEecccccee-----ecCCCccceeee
Q 036119 345 VFPKLRTLSLDNCCKLQGTLP-RRLLLLETLDITSCD--QLLVTIQCLPALSELQIDGCKRVV-----FSSPHLVHAVNV 416 (839)
Q Consensus 345 ~l~~L~~L~L~~~~~l~~~lp-~~l~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~l~~l~l 416 (839)
.+++|++|++++| .+.+..| ..+.+|++|++++|. ..+..++.+++|++|++++|.... +.....++.+++
T Consensus 176 ~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 176 GCGELKHLAISGN-KISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp CCTTCCEEECCSS-EEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred cCCCCCEEECCCC-cccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 1444444444443 3333333 245555555555554 112225556666666666555331 223344444444
Q ss_pred cccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEee
Q 036119 417 REQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRI 496 (839)
Q Consensus 417 ~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 496 (839)
.........+. ..+++|+.|++.++.-....+ ..+....++|+.|++++|.+.+.+|..++.+++|++|++
T Consensus 255 s~n~l~~~~~~---~~l~~L~~L~L~~n~l~~~ip------~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 325 (768)
T 3rgz_A 255 SSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIP------DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325 (768)
T ss_dssp CSSCCEESCCC---CCCTTCCEEECCSSEEEESCC------CCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEEC
T ss_pred CCCcccCccCc---cccCCCCEEECcCCccCCccC------HHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEEC
Confidence 43332221111 145556666665543211111 111122257788888888776677777888888888888
Q ss_pred cCCCCCcccCC--CCCCCCccEEEeccCccccccchhhhhCCCC-ccceEecccCCCCcCCCC-CCC--CCCccEEEEcC
Q 036119 497 HDCASLVSFPQ--AALPSQLRSVVIEECDALESLPEAWMQNSNS-SLECLAIRSCNSLVSFPE-VAL--PSQLRTIIIGG 570 (839)
Q Consensus 497 ~~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~-~~~--~~~L~~L~l~~ 570 (839)
++|...+.+|. ...+++|++|++++|.....+|..+. .++ +|+.|++++|.....++. ... +++|+.|++++
T Consensus 326 ~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT--NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp CSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHH--HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred CCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHH--hhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 88765555554 34577888888888776556665442 223 788888888766554442 222 56788888888
Q ss_pred CCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcC-CCCcceeeeccccccc
Q 036119 571 CHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLD-NTSLEEISISVLENLK 649 (839)
Q Consensus 571 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~ 649 (839)
|.....+|..+... ++|+.|++++|......+.....+++|+.|++++|.....++..+. .++|+.|++++|++.+
T Consensus 404 n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 404 NGFTGKIPPTLSNC---SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp SEEEEECCGGGGGC---TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CccccccCHHHhcC---CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence 86555666554332 4788888888865545554444456788888888877666665544 4889999999998888
Q ss_pred CccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC---
Q 036119 650 SLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED--- 726 (839)
Q Consensus 650 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--- 726 (839)
.+|..+..+++|++|++++|...+.+|..+..+++|++|++++|+..+.+|..+..+++|+.|++++|++...+|..
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 88888888999999999999888888888888889999999999888888888888999999999988877555521
Q ss_pred --------------------------------------------------------------------CCCCCcceEEec
Q 036119 727 --------------------------------------------------------------------GFPTNLQSLDVH 738 (839)
Q Consensus 727 --------------------------------------------------------------------~~~~~L~~L~l~ 738 (839)
..+++|++|+++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence 124678899999
Q ss_pred CCCCCCccccccCCCccccceEEEecCCCCCcCCCC---CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCcc
Q 036119 739 DLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP---FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLK 815 (839)
Q Consensus 739 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~ 815 (839)
+|++.+.+|.. +..+++|+.|++++|-.. ..+|. -+++|+.||+++|...+.+|..+..+++|+.|++++|+--.
T Consensus 641 ~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~-g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 641 YNMLSGYIPKE-IGSMPYLFILNLGHNDIS-GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp SSCCBSCCCGG-GGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CCcccccCCHH-HhccccCCEEeCcCCccC-CCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 99999887763 577889999999885322 23443 35689999999999988999889999999999999996666
Q ss_pred ccCCCCCCcccceeeecCCCCC
Q 036119 816 YFSEQGLPKSLLQLHIYACPLI 837 (839)
Q Consensus 816 ~l~~~~~~~sL~~L~i~~c~~l 837 (839)
.+|..+.+.++....+.|||.|
T Consensus 719 ~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 719 PIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp ECCSSSSGGGSCGGGGCSCTEE
T ss_pred cCCCchhhccCCHHHhcCCchh
Confidence 7887776667777777787754
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.2e-42 Score=403.44 Aligned_cols=529 Identities=17% Similarity=0.097 Sum_probs=327.9
Q ss_pred HHHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccC--CCCCCccccCCCccEEeccCccccccC
Q 036119 286 LQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPC--GAGQEVDEVFPKLRTLSLDNCCKLQGT 363 (839)
Q Consensus 286 ~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~--~~~~~~~~~l~~L~~L~L~~~~~l~~~ 363 (839)
++..+.++++|++++++.+. +..+|+.|+++++|++|+|++|.+.+.+|. .++. +++|++|++++| .+.+.
T Consensus 69 l~~~l~~L~~L~~l~~~~~~-~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-----l~~L~~L~Ls~n-~l~~~ 141 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSH-INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS-----CSGLKFLNVSSN-TLDFP 141 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSC-EEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGG-----CTTCCEEECCSS-EEECC
T ss_pred cChhHhccCcccccCCcCCC-cCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhC-----CCCCCEEECcCC-ccCCc
Confidence 45678999999999999998 777889999999999999999999888887 6666 999999999996 66666
Q ss_pred CCc----CCCCccEEeecccC---ccccc---CCCCCCccEEEeccccceee---cCCCccceeeecccccccccccccC
Q 036119 364 LPR----RLLLLETLDITSCD---QLLVT---IQCLPALSELQIDGCKRVVF---SSPHLVHAVNVREQAYFWRSETRLP 430 (839)
Q Consensus 364 lp~----~l~~L~~L~l~~~~---~l~~~---l~~l~~L~~L~l~~~~~~~~---~~~~~l~~l~l~~l~~~~~~~~~~~ 430 (839)
+|. .+++|++|++++|. ..+.. ++.+++|++|++++|..... .....++.+++.........+. .
T Consensus 142 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l 219 (768)
T 3rgz_A 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--L 219 (768)
T ss_dssp SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--C
T ss_pred CCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--c
Confidence 773 57899999999987 22333 78899999999999875542 2334555555554433222222 4
Q ss_pred CCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCC-
Q 036119 431 QDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAA- 509 (839)
Q Consensus 431 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~- 509 (839)
..+++|+.|++.++.-....+ ..+..+ ++|+.|++++|.+.+.+|.. .+++|++|++++|...+.+|...
T Consensus 220 ~~l~~L~~L~Ls~n~l~~~~~------~~l~~l-~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~ 290 (768)
T 3rgz_A 220 GDCSALQHLDISGNKLSGDFS------RAISTC-TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLS 290 (768)
T ss_dssp TTCCSCCEEECCSSCCCSCHH------HHTTTC-SSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSC
T ss_pred ccCCCCCEEECcCCcCCCccc------HHHhcC-CCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHH
Confidence 566777777776653211111 011112 35566666655554444432 55555555555554443444322
Q ss_pred -CCCCccEEEeccCccccccchhhhhCCCCccceEecccCCCCcCCCC--CCCCCCccEEEEcCCCCCcCCchhhhccc-
Q 036119 510 -LPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPE--VALPSQLRTIIIGGCHALESLPEAWMHNE- 585 (839)
Q Consensus 510 -~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~- 585 (839)
.+++|+.|++++|.....+|..+ ..+++|+.|++++|.....+|. +..+++|++|++++|.....+|..+....
T Consensus 291 ~~~~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 368 (768)
T 3rgz_A 291 GACDTLTGLDLSGNHFYGAVPPFF--GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368 (768)
T ss_dssp TTCTTCSEEECCSSEEEECCCGGG--GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTT
T ss_pred hhcCcCCEEECcCCcCCCccchHH--hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhc
Confidence 13555555555555444444433 3345555555555544434441 34445555555555543323333222110
Q ss_pred -----------------------CCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcC-CCCcceee
Q 036119 586 -----------------------LPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLD-NTSLEEIS 641 (839)
Q Consensus 586 -----------------------~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~ 641 (839)
..++|+.|++++|.....++.....+++|+.|++++|.....++..+. .++|+.|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 012455555555544333333333345566666666654444443333 36677777
Q ss_pred ecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCc
Q 036119 642 ISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVV 721 (839)
Q Consensus 642 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 721 (839)
+++|.+.+.+|..+..+++|++|++++|...+.+|..+..+++|++|++++|+..+.+|.++..+++|++|++++|++..
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 77777766677667777777777777776666666666667777777777777666777777777777777777777766
Q ss_pred cCCCC-CCCCCcceEEecCCCCCCcccccc--------------------------------------------------
Q 036119 722 SFPED-GFPTNLQSLDVHDLKISKPLLEWG-------------------------------------------------- 750 (839)
Q Consensus 722 ~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~-------------------------------------------------- 750 (839)
.+|.. ..+++|++|++++|++.+.+|...
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 66644 556777777777777665544321
Q ss_pred -------------------CCCccccceEEEecCCCCCcCCCC---CCcccceeeecCCCCCCccccCCCCCCccCeeec
Q 036119 751 -------------------SNRFTSLRRFTIWGGCPDLVSPPP---FPASLTNLWISDMPDLESISSIGENLTSLKTLRL 808 (839)
Q Consensus 751 -------------------~~~l~~L~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 808 (839)
+..+++|+.+++++|.. ...+|. -+++|+.|++++|...+.+|..++.+++|+.|++
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l-~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdL 687 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML-SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC-BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcc-cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEEC
Confidence 12245566677766421 122332 3457788888888777788877888888888888
Q ss_pred cCCCCccccCCC-CCCcccceeeecCCC
Q 036119 809 SDCPKLKYFSEQ-GLPKSLLQLHIYACP 835 (839)
Q Consensus 809 ~~c~~l~~l~~~-~~~~sL~~L~i~~c~ 835 (839)
++|.--..+|.. +-.++|++|++++|+
T Consensus 688 s~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 688 SSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 887433355542 223578888888774
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.8e-37 Score=356.93 Aligned_cols=553 Identities=16% Similarity=0.096 Sum_probs=267.1
Q ss_pred ccccceEEEEEccccchhhcccccccccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccccc-cc
Q 036119 236 FSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPN-EI 314 (839)
Q Consensus 236 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i 314 (839)
.+..++++.+........ ....+.++++|++| .+..+.+. ...+..|.++++|++|++++|. +..+|. +|
T Consensus 23 ~~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L------~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~ 93 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRL-PAANFTRYSQLTSL------DVGFNTIS-KLEPELCQKLPMLKVLNLQHNE-LSQLSDKTF 93 (680)
T ss_dssp SCTTCSEEECCSSCCCCC-CGGGGGGGTTCSEE------ECCSSCCC-CCCTTHHHHCTTCCEEECCSSC-CCCCCTTTT
T ss_pred cCCCCcEEECCCCCCCCc-CHHHHhCCCcCcEE------ECCCCccC-ccCHHHHhcccCcCEEECCCCc-cCccChhhh
Confidence 345677777665443221 11246667777777 33333221 2234557778888888888887 667775 57
Q ss_pred cCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc---CCCCccEEeecccC--ccc-cc--C
Q 036119 315 GNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR---RLLLLETLDITSCD--QLL-VT--I 386 (839)
Q Consensus 315 ~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~---~l~~L~~L~l~~~~--~l~-~~--l 386 (839)
+++++|++|++++|.+.+..|..+.. +++|++|++++| .+.+..|. .+.+|++|+++++. .++ .. .
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 167 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVK-----QKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTT-----CTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG
T ss_pred ccCCCCCEEECCCCccCccChhHccc-----cCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccccCHHHhhc
Confidence 88888888888888876555556666 888888888885 55544443 46678888887765 222 22 2
Q ss_pred CCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCC
Q 036119 387 QCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCR 466 (839)
Q Consensus 387 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~ 466 (839)
..+++|++|++++|....+... ....+++|+.+.+.++......... ....+. .++
T Consensus 168 ~~~~~L~~L~L~~n~l~~~~~~--------------------~~~~l~~L~~L~l~~~~l~~~~~~~--~~~~l~--~~~ 223 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIKEFSPG--------------------CFHAIGRLFGLFLNNVQLGPSLTEK--LCLELA--NTS 223 (680)
T ss_dssp GTTCEESEEECTTCCCCCBCTT--------------------GGGGSSEECEEECTTCCCHHHHHHH--HHHHHT--TSC
T ss_pred cccccccEEECCCCcccccChh--------------------hhhhhhhhhhhhccccccChhhHHH--HHHHhh--hcc
Confidence 3457788888887754332211 1122233333333222100000000 000000 023
Q ss_pred ceEEEeccCCCCCccccccCCCCC--ccEEeecCCCCCcccCC-CCCCCCccEEEeccCccccccchhhhhCCCCccceE
Q 036119 467 LQFLELSCCEGLTRLPQALLTLSS--LTEMRIHDCASLVSFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNSSLECL 543 (839)
Q Consensus 467 L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 543 (839)
|+.|++++|.+.+..|.++..++. |+.|++++|......+. ...+++|+.|++++|......+..+ ..+++|+.|
T Consensus 224 L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L 301 (680)
T 1ziw_A 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL--HGLFNVRYL 301 (680)
T ss_dssp CCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTT--TTCTTCCEE
T ss_pred ccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhh--cCCCCccEE
Confidence 444444444443333333433322 44444444432222111 2234444444444443322222222 233444444
Q ss_pred ecccCCCCc-----CCC-----CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCC-cccccCC---CC
Q 036119 544 AIRSCNSLV-----SFP-----EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSN-LALLSRN---GN 609 (839)
Q Consensus 544 ~l~~~~~l~-----~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~-l~~~~~~---~~ 609 (839)
++++|.... .+| .+..+++|+.|++++|. +..++...+... ++|+.|++++|.. ...++.. ..
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l--~~L~~L~Ls~n~~~~~~l~~~~f~~~ 378 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGL--INLKYLSLSNSFTSLRTLTNETFVSL 378 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTTTTTC--TTCCEEECTTCBSCCCEECTTTTGGG
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCChhHhccc--cCCcEEECCCCchhhhhcchhhhccc
Confidence 444332111 111 12233444444444442 222222211111 2444444444421 1111110 00
Q ss_pred cccccceeEeccCCCchhhhhhcC-CCCcceeeecccccccCcc-ccccCCCCCCeEEecCCCCCcccCCCCCCCCCcce
Q 036119 610 LPQSLKYLKIEDCSKLESLAERLD-NTSLEEISISVLENLKSLP-ADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTE 687 (839)
Q Consensus 610 ~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 687 (839)
..++|+.|++++|......+..+. .++|+.|++++|.+.+.+| ..+..+++|++|++++|......+..+..+++|+.
T Consensus 379 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~ 458 (680)
T 1ziw_A 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458 (680)
T ss_dssp TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCE
T ss_pred ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccccc
Confidence 013455555555544333333222 2556666666665554443 34555666666666666554444445555566666
Q ss_pred Eeccccccc--ccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCcc-------ccccCCCcccc
Q 036119 688 LTIYDCENL--KALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPL-------LEWGSNRFTSL 757 (839)
Q Consensus 688 L~l~~~~~l--~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~-------~~~~~~~l~~L 757 (839)
|++++|... +.+|..+..+++|+.|++++|.+....+.. ..+++|++|++++|++.+.. +...+..+++|
T Consensus 459 L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L 538 (680)
T 1ziw_A 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538 (680)
T ss_dssp EECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred chhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC
Confidence 666665432 345555666666666666666554333322 44556666666666555321 11123455666
Q ss_pred ceEEEecCCCCCcCCCC----CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCCC---Ccccceee
Q 036119 758 RRFTIWGGCPDLVSPPP----FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGL---PKSLLQLH 830 (839)
Q Consensus 758 ~~l~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~---~~sL~~L~ 830 (839)
+.|++++|. +..++. .+++|+.|++++|......+..+..+++|+.|++++| +++.+++..+ .++|+.|+
T Consensus 539 ~~L~L~~N~--l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~ 615 (680)
T 1ziw_A 539 HILNLESNG--FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELD 615 (680)
T ss_dssp CEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEE
T ss_pred CEEECCCCC--CCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEE
Confidence 666665542 222221 2346666666666544333333456666666666666 5555554321 24666666
Q ss_pred ecCCC
Q 036119 831 IYACP 835 (839)
Q Consensus 831 i~~c~ 835 (839)
+++||
T Consensus 616 l~~N~ 620 (680)
T 1ziw_A 616 MRFNP 620 (680)
T ss_dssp CTTCC
T ss_pred ccCCC
Confidence 66654
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.6e-36 Score=348.10 Aligned_cols=478 Identities=16% Similarity=0.062 Sum_probs=315.9
Q ss_pred ceeEEEeCCCcccccc-cccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc---CCCC
Q 036119 295 RLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR---RLLL 370 (839)
Q Consensus 295 ~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~---~l~~ 370 (839)
.+++|++++|. +..+ |.+|+++++|++|++++|.+.+..|..+.. +++|++|++++| .+.+..|. .+.+
T Consensus 34 ~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 34 STECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-----QHRLDTLVLTAN-PLIFMAETALSGPKA 106 (606)
T ss_dssp TCCEEECTTCC-CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTT-----CTTCCEEECTTC-CCSEECTTTTSSCTT
T ss_pred cCcEEEccCCc-cCcCChhHhccCccceEEECCCCccceeChhhccC-----ccccCeeeCCCC-cccccChhhhccccc
Confidence 57888888888 5554 567888888888888888887766777766 888888888885 55534443 4566
Q ss_pred ccEEeecccC--cc-cccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCc
Q 036119 371 LETLDITSCD--QL-LVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQL 447 (839)
Q Consensus 371 L~~L~l~~~~--~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l 447 (839)
|++|++++|. .+ +..++.+++|++|++++|....+... .+ ..++
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------------~~-~~l~------------- 153 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP-------------------KG-FPTE------------- 153 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC-------------------TT-CCCT-------------
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc-------------------cc-cCCc-------------
Confidence 7777777765 22 45677778888888877753321100 00 1123
Q ss_pred ccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCcc--EEeecCCCCCcccCCCCCCCCccEEEeccCccc
Q 036119 448 ISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLT--EMRIHDCASLVSFPQAALPSQLRSVVIEECDAL 525 (839)
Q Consensus 448 ~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l 525 (839)
+|+.|++++|.+....+..++.+++|+ .|++++|......+......+|+.|++.+|..+
T Consensus 154 ------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~ 215 (606)
T 3t6q_A 154 ------------------KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215 (606)
T ss_dssp ------------------TCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCH
T ss_pred ------------------ccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhH
Confidence 455555555544333344445555555 455555443333333333344555555444311
Q ss_pred c-------------------------ccchh-hhhCCCCccceEecccCCCCcCCCC-CCCCCCccEEEEcCCCCCcCCc
Q 036119 526 E-------------------------SLPEA-WMQNSNSSLECLAIRSCNSLVSFPE-VALPSQLRTIIIGGCHALESLP 578 (839)
Q Consensus 526 ~-------------------------~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~ 578 (839)
. .++.. +......+|+.|++++|......+. +..+++|++|++++|. +..+|
T Consensus 216 ~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp 294 (606)
T 3t6q_A 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELP 294 (606)
T ss_dssp HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCC
T ss_pred HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCC
Confidence 1 01111 1000112688888888755443332 5667788888888884 55676
Q ss_pred hhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhh--hcCCCCcceeeecccccccCc--ccc
Q 036119 579 EAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAE--RLDNTSLEEISISVLENLKSL--PAD 654 (839)
Q Consensus 579 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~ 654 (839)
..+... ++|++|++++|......+.....+++|+.|++++|.....++. ....++|+.|++++|.+.+.. +..
T Consensus 295 ~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 295 SGLVGL---STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp SSCCSC---TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred hhhccc---ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 544222 4788888888865554443344457888999888876544433 223488999999988887655 667
Q ss_pred ccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccc-cCcccccccccccccccCCccCCCC-CCCCCc
Q 036119 655 LHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPN-CMHNLTSLLNLKISECPSVVSFPED-GFPTNL 732 (839)
Q Consensus 655 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L 732 (839)
+..+++|++|++++|......|..+..+++|++|++++|+..+..|. .+..+++|+.|++++|.+....|.. ..+++|
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence 78889999999999887777777788888999999999877666554 3788899999999998887665554 668889
Q ss_pred ceEEecCCCCCCcc-c-cccCCCccccceEEEecCCCCCcC--CCCCCcccceeeecCCCCCCccccCCCCCCccCeeec
Q 036119 733 QSLDVHDLKISKPL-L-EWGSNRFTSLRRFTIWGGCPDLVS--PPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRL 808 (839)
Q Consensus 733 ~~L~l~~~~~~~~~-~-~~~~~~l~~L~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 808 (839)
++|++++|++.+.. + ...+..+++|+.|++++|...-.. ....+++|+.|++++|...+..|..+..+++| .|++
T Consensus 452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L 530 (606)
T 3t6q_A 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL 530 (606)
T ss_dssp CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC
T ss_pred CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEEC
Confidence 99999999887522 1 124567888999999875322111 11235689999999998888888888899999 9999
Q ss_pred cCCCCccccCCCCC--CcccceeeecCCCC
Q 036119 809 SDCPKLKYFSEQGL--PKSLLQLHIYACPL 836 (839)
Q Consensus 809 ~~c~~l~~l~~~~~--~~sL~~L~i~~c~~ 836 (839)
++| +++.+++..+ .++|+.|++++||.
T Consensus 531 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 531 ASN-HISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CSS-CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred cCC-cccccCHhhcccCCCCCEEeCCCCCc
Confidence 998 6677665433 26899999999873
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.1e-36 Score=346.50 Aligned_cols=482 Identities=16% Similarity=0.080 Sum_probs=275.5
Q ss_pred HHhcCCCceeEEEeCCCcccccc-cccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC-
Q 036119 288 MLLNHLPRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP- 365 (839)
Q Consensus 288 ~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp- 365 (839)
..|.++++|++|++++|. +..+ |.+|+++++|++|++++|.+.+..|..+.. +++|++|++++| .+. .+|
T Consensus 50 ~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~L~~n-~l~-~~~~ 121 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG-----LTSLENLVAVET-KLA-SLES 121 (606)
T ss_dssp TTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT-----CTTCCEEECTTS-CCC-CSSS
T ss_pred hhccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCCcccccChhhcCC-----cccCCEEEccCC-ccc-cccc
Confidence 346666777777777766 4443 456667777777777777665555665555 677777777765 444 222
Q ss_pred ---cCCCCccEEeecccC----cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCc
Q 036119 366 ---RRLLLLETLDITSCD----QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNW 438 (839)
Q Consensus 366 ---~~l~~L~~L~l~~~~----~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~ 438 (839)
..+.+|++|++++|. .+|..++.+++|++|++++|....+.. ..+..+
T Consensus 122 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~-----------------------~~~~~l-- 176 (606)
T 3vq2_A 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV-----------------------NDLQFL-- 176 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT-----------------------TTTHHH--
T ss_pred cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh-----------------------hhhhhh--
Confidence 245566666666654 245566666666666666654322100 000000
Q ss_pred eecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcc-cCC-CCCCCCccE
Q 036119 439 LQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVS-FPQ-AALPSQLRS 516 (839)
Q Consensus 439 L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-l~~-~~~~~~L~~ 516 (839)
..++..++.|++++|.+. .++.......+|+.|++++|..... ++. ...+++|+.
T Consensus 177 ----------------------~~L~~~l~~L~l~~n~l~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 233 (606)
T 3vq2_A 177 ----------------------RENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233 (606)
T ss_dssp ----------------------HHCTTCCCEEECTTCCCC-EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEE
T ss_pred ----------------------hccccccceeeccCCCcc-eeCcccccCceeeeeeccCCccchhHHHHHhcccccccc
Confidence 001123668999999884 4554444445899999999865422 111 224566666
Q ss_pred EEeccCcc-----ccccchhhh-hCCCCccceEeccc-CCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCC
Q 036119 517 VVIEECDA-----LESLPEAWM-QNSNSSLECLAIRS-CNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPAT 589 (839)
Q Consensus 517 L~l~~~~~-----l~~~~~~~~-~~~~~~L~~L~l~~-~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 589 (839)
+.+..... +..+..... ......++.+.+.. +.....++.+..+++|+.|++.++. +..++ .+.. .++
T Consensus 234 l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~--~l~~--~~~ 308 (606)
T 3vq2_A 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLE--DVPK--HFK 308 (606)
T ss_dssp EEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC-CCCCC--CCCT--TCC
T ss_pred ccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCcc-chhhh--hccc--ccc
Confidence 55532211 111111100 00001344455522 2223333444555666667666664 34444 1111 135
Q ss_pred cceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccC--ccccccCCCCCCeEEec
Q 036119 590 LEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKS--LPADLHNLHHLQKIWIF 667 (839)
Q Consensus 590 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~ 667 (839)
|+.|++.+|.. ..++.. .+++|+.|++++|...... .....++|+.|++++|.+.+. .|..+..+++|++|+++
T Consensus 309 L~~L~l~~n~l-~~lp~~--~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~ 384 (606)
T 3vq2_A 309 WQSLSIIRCQL-KQFPTL--DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384 (606)
T ss_dssp CSEEEEESCCC-SSCCCC--CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECC
T ss_pred CCEEEcccccC-cccccC--CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECC
Confidence 66677766655 444432 3456777777766544433 222446677777777666543 25556667777777777
Q ss_pred CCCCCcccCCCCCCCCCcceEeccccccccccc-ccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCc
Q 036119 668 GCPNLESFPEEGLPSTKLTELTIYDCENLKALP-NCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKP 745 (839)
Q Consensus 668 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~ 745 (839)
+|... .+|..+..+++|++|++++|...+..| ..+..+++|+.|++++|.+....|.. ..+++|++|++++|.+.+.
T Consensus 385 ~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 463 (606)
T 3vq2_A 385 FNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463 (606)
T ss_dssp SCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc
Confidence 76533 355566666777777777776555555 45666777777777777666555543 5566777777777766653
Q ss_pred cccccCCCccccceEEEecCCCCCcCC--CCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCC--C
Q 036119 746 LLEWGSNRFTSLRRFTIWGGCPDLVSP--PPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQ--G 821 (839)
Q Consensus 746 ~~~~~~~~l~~L~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~ 821 (839)
.....+..+++|+.|++++|...-... ...+++|+.|++++|...+..|..+..+++|+.|++++| +++.+|.. .
T Consensus 464 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~ 542 (606)
T 3vq2_A 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQH 542 (606)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGG
T ss_pred chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhh
Confidence 222234566777777776642211110 113467888888888777777777888888888888888 57777764 3
Q ss_pred CCcccceeeecCCCC
Q 036119 822 LPKSLLQLHIYACPL 836 (839)
Q Consensus 822 ~~~sL~~L~i~~c~~ 836 (839)
++++|++|++++||.
T Consensus 543 l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 543 FPKSLAFFNLTNNSV 557 (606)
T ss_dssp SCTTCCEEECCSCCC
T ss_pred hcccCcEEEccCCCc
Confidence 345688888888764
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.7e-36 Score=350.78 Aligned_cols=536 Identities=15% Similarity=0.047 Sum_probs=380.3
Q ss_pred ccceEEEEEccccchhhcccccccccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCccccccc-ccccC
Q 036119 238 ESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLP-NEIGN 316 (839)
Q Consensus 238 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~ 316 (839)
...+++.+....... .....+.++++|++| .+..+.+. .+++..|..+++|++|++++|. +..+| ..|++
T Consensus 49 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L------~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 119 (680)
T 1ziw_A 49 SQLTSLDVGFNTISK-LEPELCQKLPMLKVL------NLQHNELS-QLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVK 119 (680)
T ss_dssp TTCSEEECCSSCCCC-CCTTHHHHCTTCCEE------ECCSSCCC-CCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTT
T ss_pred CcCcEEECCCCccCc-cCHHHHhcccCcCEE------ECCCCccC-ccChhhhccCCCCCEEECCCCc-cCccChhHccc
Confidence 456777765443221 112346778899988 33444332 3344568999999999999999 66665 78999
Q ss_pred cCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc-----CCCCccEEeecccC---cccccCCC
Q 036119 317 LKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR-----RLLLLETLDITSCD---QLLVTIQC 388 (839)
Q Consensus 317 L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~-----~l~~L~~L~l~~~~---~l~~~l~~ 388 (839)
+++|++|++++|.+.+..|..+.. +++|++|++++| .+++..|. .+.+|++|+++++. ..+..++.
T Consensus 120 l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 193 (680)
T 1ziw_A 120 QKNLITLDLSHNGLSSTKLGTQVQ-----LENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193 (680)
T ss_dssp CTTCCEEECCSSCCSCCCCCSSSC-----CTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred cCCCCEEECCCCcccccCchhhcc-----cccCCEEEccCC-cccccCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence 999999999999998877777766 999999999996 66643332 34789999999886 23466788
Q ss_pred CCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCc-CCc
Q 036119 389 LPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELP-CRL 467 (839)
Q Consensus 389 l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~-~~L 467 (839)
+++|+.|.+.++...... ...... ....++|+.|++.++.-.. .. ...+..++ ++|
T Consensus 194 l~~L~~L~l~~~~l~~~~---------------~~~~~~--~l~~~~L~~L~L~~n~l~~-~~-----~~~~~~l~~~~L 250 (680)
T 1ziw_A 194 IGRLFGLFLNNVQLGPSL---------------TEKLCL--ELANTSIRNLSLSNSQLST-TS-----NTTFLGLKWTNL 250 (680)
T ss_dssp SSEECEEECTTCCCHHHH---------------HHHHHH--HHTTSCCCEEECTTSCCCE-EC-----TTTTGGGGGSCC
T ss_pred hhhhhhhhccccccChhh---------------HHHHHH--HhhhccccEEEccCCcccc-cC-----hhHhhccCcCCC
Confidence 999999999876532100 000000 0123567777777653211 10 01122221 359
Q ss_pred eEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC-CCCCCCccEEEeccCcccc-----ccch--hhhhCCCCc
Q 036119 468 QFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ-AALPSQLRSVVIEECDALE-----SLPE--AWMQNSNSS 539 (839)
Q Consensus 468 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~-----~~~~--~~~~~~~~~ 539 (839)
+.|++++|.+....+.+++.+++|+.|++++|......+. ...+++|+.|++.++.... .+|. ......+++
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 9999999988666677888999999999999866554443 4568999999998764322 1221 111145789
Q ss_pred cceEecccCCCCcCCC-CCCCCCCccEEEEcCCCC-CcCCchhhhcccCCCCcceEEEeecCCcccccCCCCccccccee
Q 036119 540 LECLAIRSCNSLVSFP-EVALPSQLRTIIIGGCHA-LESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYL 617 (839)
Q Consensus 540 L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L 617 (839)
|+.|++++|......+ .+..+++|++|++++|.. +..++...+.....++|+.|++++|......+.....+++|+.|
T Consensus 331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 410 (680)
T 1ziw_A 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410 (680)
T ss_dssp CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEE
Confidence 9999999987655444 356778999999998752 33333333322222479999999987665555445556789999
Q ss_pred EeccCCCchhhh--hhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCC--cccCCCCCCCCCcceEecccc
Q 036119 618 KIEDCSKLESLA--ERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNL--ESFPEEGLPSTKLTELTIYDC 693 (839)
Q Consensus 618 ~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~ 693 (839)
++++|.....++ .....++|++|++++|++.+..+..+..+++|+.|++++|... +..|..+..+++|+.|++++|
T Consensus 411 ~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N 490 (680)
T 1ziw_A 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490 (680)
T ss_dssp ECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS
T ss_pred eCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC
Confidence 999998765553 2234589999999999988888888889999999999998764 467888888999999999999
Q ss_pred cccccccccCcccccccccccccccCCccCC----C-----CCCCCCcceEEecCCCCCCccccccCCCccccceEEEec
Q 036119 694 ENLKALPNCMHNLTSLLNLKISECPSVVSFP----E-----DGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWG 764 (839)
Q Consensus 694 ~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~----~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~ 764 (839)
...+..|..+.++++|++|++++|.+....+ . ...+++|++|++++|.+.. ++...+..+++|+.+++++
T Consensus 491 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC-CCHHHcccccCcceeECCC
Confidence 8766556678999999999999998764321 1 2567899999999999884 5554568899999999987
Q ss_pred CCCCCcCCCC----CCcccceeeecCCCCCCccccCCC-CCCccCeeeccCCCCc
Q 036119 765 GCPDLVSPPP----FPASLTNLWISDMPDLESISSIGE-NLTSLKTLRLSDCPKL 814 (839)
Q Consensus 765 ~~~~~~~~~~----~~~~L~~L~l~~~~~l~~~~~~~~-~l~~L~~L~l~~c~~l 814 (839)
|. +..++. .+++|+.|++++|......+..+. .+++|+.|++++||-.
T Consensus 570 N~--l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 570 NN--LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp SC--CCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CC--CCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 53 334443 357899999999977665554454 6889999999998644
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.3e-35 Score=337.19 Aligned_cols=154 Identities=17% Similarity=0.184 Sum_probs=113.1
Q ss_pred ccccceEEEEEccccchhhcccccccccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccc-cccc
Q 036119 236 FSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNL-PNEI 314 (839)
Q Consensus 236 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i 314 (839)
++..+|++.+........ ....+.++++|++| .+..|.+. .+.+..|.++++|++|+|++|. +..+ |.+|
T Consensus 30 ~~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L------~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~ 100 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKIL-KSYSFSNFSELQWL------DLSRCEIE-TIEDKAWHGLHHLSNLILTGNP-IQSFSPGSF 100 (606)
T ss_dssp SCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEE------ECTTCCCC-EECTTTTTTCTTCCEEECTTCC-CCCCCTTSS
T ss_pred CCCCcCEEECCCCCcCEe-ChhhccCCccCcEE------eCCCCccc-ccCHHHhhchhhcCEeECCCCc-ccccChhhc
Confidence 456788887765443221 12357788899988 34444332 2345678999999999999999 6555 8999
Q ss_pred cCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCcccccc-CCCc---CCCCccEEeecccC--cc-cccCC
Q 036119 315 GNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQG-TLPR---RLLLLETLDITSCD--QL-LVTIQ 387 (839)
Q Consensus 315 ~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~-~lp~---~l~~L~~L~l~~~~--~l-~~~l~ 387 (839)
+++++|++|++++|.+.+..|..++. +++|++|++++| .+.+ .+|. .+++|++|+++++. .+ +..++
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQ-----LITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTT-----CTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred CCcccCCEEEccCCccccccccccCC-----CCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 99999999999999997766677776 999999999997 5543 5675 67899999999986 22 34455
Q ss_pred CCCCcc----EEEecccccee
Q 036119 388 CLPALS----ELQIDGCKRVV 404 (839)
Q Consensus 388 ~l~~L~----~L~l~~~~~~~ 404 (839)
.+++|+ +|++++|....
T Consensus 175 ~l~~L~~~l~~L~l~~n~l~~ 195 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNPIDF 195 (606)
T ss_dssp HHHHCTTCCCEEECTTCCCCE
T ss_pred hhhccccccceeeccCCCcce
Confidence 555554 89998887544
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.9e-34 Score=332.47 Aligned_cols=505 Identities=14% Similarity=0.086 Sum_probs=291.0
Q ss_pred ccccceEEEEEccccchhhcccccccccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCccccccccccc
Q 036119 236 FSESLRHFSYICGEYDGEKRLKSICDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIG 315 (839)
Q Consensus 236 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~ 315 (839)
++..++++.+........ ....+.++++|++| .+..|.+. .+.+..|.++++|++|++++|.+....|..|+
T Consensus 31 l~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L------~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTI-QNTTFSRLINLTFL------DLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp SCTTCCEEECTTCCCSEE-CTTTSTTCTTCSEE------ECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred CCCcCcEEEccCCccCcC-ChhHhccCccceEE------ECCCCccc-eeChhhccCccccCeeeCCCCcccccChhhhc
Confidence 344556665544332211 11245566666666 23333221 12344566677777777777763333456667
Q ss_pred CcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCcccccc-CCCc--CCCCccEEeecccC--cc-cccCCCC
Q 036119 316 NLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQG-TLPR--RLLLLETLDITSCD--QL-LVTIQCL 389 (839)
Q Consensus 316 ~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~-~lp~--~l~~L~~L~l~~~~--~l-~~~l~~l 389 (839)
++++|++|++++|.+.+..|..+.. +++|++|++++| .+.+ .+|. .+++|++|+++++. .+ +..++.+
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~~~~~~-----l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDFIPLHN-----QKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGGSCCTT-----CTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred ccccccEeeccccCcccCCcchhcc-----CCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccccChhhhhhh
Confidence 7777777777777765544555544 677777777765 4442 2232 35667777776664 22 3445666
Q ss_pred CCcc--EEEeccccceeecCC----CccceeeecccccccccccccCCCCC--CCCceecccCCCcccccccccccCCCC
Q 036119 390 PALS--ELQIDGCKRVVFSSP----HLVHAVNVREQAYFWRSETRLPQDIR--SLNWLQISRCPQLISLVTVEEHDQQQP 461 (839)
Q Consensus 390 ~~L~--~L~l~~~~~~~~~~~----~~l~~l~l~~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~l~~~~~~~~~~~~~~ 461 (839)
++|+ .|++++|....+... ..++.+++........ ....+. .+..+.+..+..+............+.
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLV----IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHH----HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred cccceeEEecCCCccCccChhHhhhccccccccCCchhHHH----HhhhccccchhheechhhccccccccChhHhchhh
Confidence 6666 666666654443221 1122222221110000 000011 111111211111111111111111111
Q ss_pred CCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC-CCCCCCccEEEeccCccccccchhhhhCCCCcc
Q 036119 462 ELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNSSL 540 (839)
Q Consensus 462 ~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 540 (839)
. .+|+.|++++|.+....+..++.+++|+.|++++|. ++.+|. ...+++|++|++++|......+..+ ..+++|
T Consensus 253 ~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L 327 (606)
T 3t6q_A 253 E--MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISA--SNFPSL 327 (606)
T ss_dssp G--SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG--GGCTTC
T ss_pred c--CceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhh--hccCcC
Confidence 1 268888888888865555568888889999998884 445554 4457888888888886544434333 456788
Q ss_pred ceEecccCCCCcCCCC--CCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeE
Q 036119 541 ECLAIRSCNSLVSFPE--VALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLK 618 (839)
Q Consensus 541 ~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~ 618 (839)
+.|++++|.....++. +..+++|+.|++++|.... +.. .+.....+++|+.|+
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~------------------------~~~~~~~l~~L~~L~ 382 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET-SDC------------------------CNLQLRNLSHLQSLN 382 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE-EEE------------------------STTTTTTCTTCCEEE
T ss_pred CEEECCCCCcccccchhhhhccCcCCEEECCCCcccc-ccC------------------------cchhcccCCCCCEEE
Confidence 8888888766555542 4556677777776663211 100 011122235677777
Q ss_pred eccCCCchhhhhhcC-CCCcceeeecccccccCcccc-ccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccc
Q 036119 619 IEDCSKLESLAERLD-NTSLEEISISVLENLKSLPAD-LHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENL 696 (839)
Q Consensus 619 l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 696 (839)
+++|......+..+. .++|+.|++++|++.+..+.. +..+++|++|++++|......|..+..+++|++|++++|+..
T Consensus 383 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp CCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred CCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence 777765444444333 377888888888877665543 678888888888888777767777777888888888888765
Q ss_pred cc---ccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCC
Q 036119 697 KA---LPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSP 772 (839)
Q Consensus 697 ~~---lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 772 (839)
+. .+..+..+++|+.|++++|.+....|.. ..+++|++|++++|++.+..+.. +..++
T Consensus 463 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~----------------- 524 (606)
T 3t6q_A 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA-LSHLK----------------- 524 (606)
T ss_dssp GGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGG-GTTCC-----------------
T ss_pred ccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhH-hCccc-----------------
Confidence 52 2346788888888888888887665544 66788888888888887655432 22222
Q ss_pred CCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCC
Q 036119 773 PPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 773 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
+| .|++++|...+..|..+..+++|+.|++++||
T Consensus 525 -----~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 525 -----GI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp -----SC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred -----cc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 45 66666666655555555666677777777764
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=319.67 Aligned_cols=472 Identities=16% Similarity=0.074 Sum_probs=295.3
Q ss_pred CCceeEEEeCCCccccc-ccccccCcCcCcEeEecCccccccc-cCCCCCCccccCCCccEEeccCccccccCCCc---C
Q 036119 293 LPRLRVFSLCGYRNIFN-LPNEIGNLKHLRCLNLSRTKWEEWI-PCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR---R 367 (839)
Q Consensus 293 l~~L~~L~L~~~~~~~~-lp~~i~~L~~L~~L~L~~~~~~~~~-p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~---~ 367 (839)
.++|++|+|++|. +.. .|.+|.++++|++|++++|...+.+ |..+.. +++|++|+|++| .+.+..|. .
T Consensus 23 p~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~-----L~~L~~L~Ls~N-~l~~~~p~~~~~ 95 (844)
T 3j0a_A 23 LNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN-----LPNLRILDLGSS-KIYFLHPDAFQG 95 (844)
T ss_dssp CTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSS-----CTTCCEEECTTC-CCCEECTTSSCS
T ss_pred CCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcC-----CCCCCEEECCCC-cCcccCHhHccC
Confidence 4678888888888 444 4678888888888888888655555 555655 888888888885 55544453 4
Q ss_pred CCCccEEeecccCc---cccc--CCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecc
Q 036119 368 LLLLETLDITSCDQ---LLVT--IQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQIS 442 (839)
Q Consensus 368 l~~L~~L~l~~~~~---l~~~--l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~ 442 (839)
+.+|++|++++|.- ++.. ++.+++|++|++++|........
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~---------------------------------- 141 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH---------------------------------- 141 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC----------------------------------
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc----------------------------------
Confidence 56677777777652 2333 66777777777777653210000
Q ss_pred cCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCC--CCccEEeecCCCCCcccCCC-CCCC------C
Q 036119 443 RCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTL--SSLTEMRIHDCASLVSFPQA-ALPS------Q 513 (839)
Q Consensus 443 ~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~l~~~-~~~~------~ 513 (839)
..+..+ ++|+.|++++|.+....+..++.+ ++|+.|++++|......+.. ..++ +
T Consensus 142 ---------------~~~~~L-~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 205 (844)
T 3j0a_A 142 ---------------PSFGKL-NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205 (844)
T ss_dssp ---------------GGGGTC-SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred ---------------hhHhhC-CCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence 001111 588999999998877777777777 89999999998766544432 2222 4
Q ss_pred ccEEEeccCccccccchhhhh-CCCCccceEecccCCCCcCC--------C--CC--CCCCCccEEEEcCCCCCcCCchh
Q 036119 514 LRSVVIEECDALESLPEAWMQ-NSNSSLECLAIRSCNSLVSF--------P--EV--ALPSQLRTIIIGGCHALESLPEA 580 (839)
Q Consensus 514 L~~L~l~~~~~l~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~--------~--~~--~~~~~L~~L~l~~~~~l~~~~~~ 580 (839)
|+.|++++|......+..+.. ...+.++.+.+..+..-..+ . .+ ..+++|+.|++++|... .++..
T Consensus 206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~~~ 284 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSR 284 (844)
T ss_dssp BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC-EECSC
T ss_pred eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc-ccChh
Confidence 899999988655444433321 12356777777632211111 0 01 12367888988887543 33222
Q ss_pred hhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCC
Q 036119 581 WMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLH 659 (839)
Q Consensus 581 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~ 659 (839)
.+... ++|+.|++++|......+.....+++|+.|++++|......+..+ ..++|+.|++++|.+....+..+..++
T Consensus 285 ~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 362 (844)
T 3j0a_A 285 VFETL--KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362 (844)
T ss_dssp CSSSC--CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred hhhcC--CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence 22221 478888888886555444444445688888888886544434333 347888888888888766666778888
Q ss_pred CCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC---CCCCCcceEE
Q 036119 660 HLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED---GFPTNLQSLD 736 (839)
Q Consensus 660 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~L~~L~ 736 (839)
+|++|++++|... .++ .+++|+.|++++|+.. .+|.. ..+++.|++++|.+.. ++.. ..+++|++|+
T Consensus 363 ~L~~L~Ls~N~l~-~i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~-l~~~~~~~~l~~L~~L~ 432 (844)
T 3j0a_A 363 KLQTLDLRDNALT-TIH----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLEN-LDILYFLLRVPHLQILI 432 (844)
T ss_dssp CCCEEEEETCCSC-CCS----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCS-STTHHHHTTCTTCCEEE
T ss_pred CCCEEECCCCCCC-ccc----CCCCcchhccCCCCcc-ccccc---ccccceeecccCcccc-CchhhhhhcCCccceee
Confidence 8888888888654 233 2667888888887543 45543 3456666666665543 2211 3466777777
Q ss_pred ecCCCCCCccccccCCCccccceEEEecCCCCCc-------CCCCCCcccceeeecCCCCCCccccCCCCCCccCeeecc
Q 036119 737 VHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLV-------SPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLS 809 (839)
Q Consensus 737 l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 809 (839)
+++|++.+..+......+++|+.|++++|..... .....+++|+.|++++|...+..|..+..+++|+.|+++
T Consensus 433 Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 512 (844)
T 3j0a_A 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512 (844)
T ss_dssp EESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEE
T ss_pred CCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECC
Confidence 7777766544433344566777777776432210 001123567777777776655555556667777777777
Q ss_pred CCCCccccCCCCCCcccceeeecCCC
Q 036119 810 DCPKLKYFSEQGLPKSLLQLHIYACP 835 (839)
Q Consensus 810 ~c~~l~~l~~~~~~~sL~~L~i~~c~ 835 (839)
+| +++.+++..++++|+.|++++|.
T Consensus 513 ~N-~l~~l~~~~~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 513 SN-RLTVLSHNDLPANLEILDISRNQ 537 (844)
T ss_dssp SC-CCSSCCCCCCCSCCCEEEEEEEC
T ss_pred CC-CCCccChhhhhccccEEECCCCc
Confidence 76 66666666666666666666553
No 10
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=311.46 Aligned_cols=423 Identities=15% Similarity=0.103 Sum_probs=249.3
Q ss_pred CceeEEEeCCCccccccc-ccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc-CCCCc
Q 036119 294 PRLRVFSLCGYRNIFNLP-NEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR-RLLLL 371 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~-~l~~L 371 (839)
++|++|++++|. +..+| ..|.++++|++|++++|.+.+..|..+.. +++|++|++++| .++ .+|. .+.+|
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N-~l~-~lp~~~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-----NQELEYLDLSHN-KLV-KISCHPTVNL 92 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-----CTTCCEEECCSS-CCC-EEECCCCCCC
T ss_pred ccccEEECCCCc-ccccChhhccccccccEEecCCCccCCcChHHhhc-----ccCCCEEecCCC-cee-ecCccccCCc
Confidence 677888888877 55544 56777888888888888776666666665 778888888775 555 4553 56677
Q ss_pred cEEeecccC----cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCc
Q 036119 372 ETLDITSCD----QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQL 447 (839)
Q Consensus 372 ~~L~l~~~~----~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l 447 (839)
++|++++|. .+|..++.+++|++|++++|.... . .+.
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--------------------------~--------~~~----- 133 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--------------------------S--------SVL----- 133 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--------------------------G--------GGG-----
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCcccch--------------------------h--------hcc-----
Confidence 777777665 234667777777777776654211 0 000
Q ss_pred ccccccccccCCCCCCcCCc--eEEEeccCCC--CCccccccCCCC-CccEEeecCCCCCcccCCC--CCCCCccEEEec
Q 036119 448 ISLVTVEEHDQQQPELPCRL--QFLELSCCEG--LTRLPQALLTLS-SLTEMRIHDCASLVSFPQA--ALPSQLRSVVIE 520 (839)
Q Consensus 448 ~~~~~~~~~~~~~~~l~~~L--~~L~l~~~~~--~~~~~~~l~~l~-~L~~L~l~~~~~~~~l~~~--~~~~~L~~L~l~ 520 (839)
.+ ++| +.|++++|.+ ....|.++..+. ....+++++|.....++.. ..+++|+.|+++
T Consensus 134 -----------~l----~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 198 (520)
T 2z7x_B 134 -----------PI----AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198 (520)
T ss_dssp -----------GG----TTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEE
T ss_pred -----------cc----ccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccc
Confidence 00 234 8888888877 566666666555 2334555566554444432 235666666666
Q ss_pred cCcc-------ccccchhhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceE
Q 036119 521 ECDA-------LESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHL 593 (839)
Q Consensus 521 ~~~~-------l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L 593 (839)
+|.. ...++ .+ ..+++|+.|++++|.... ............++|+.|
T Consensus 199 ~n~~~~~~~~~~~~~~-~l--~~l~~L~~L~l~~~~l~~-----------------------~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 199 CVLEDNKCSYFLSILA-KL--QTNPKLSNLTLNNIETTW-----------------------NSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp ECCSTTTTHHHHHHHH-GG--GGCTTCCEEEEEEEEEEH-----------------------HHHHHHHHHHHTSSCSEE
T ss_pred ccccccccceeecchh-hh--ccccchhhccccccccCH-----------------------HHHHHHHHHhhhCcccEE
Confidence 6541 11111 11 233445555444432211 100000000001245566
Q ss_pred EEeecCCcccccCCC-----CcccccceeEeccCCCchhhh-----hhcCCCCcceeeecccccccCccccccCCCCCCe
Q 036119 594 EVSYCSNLALLSRNG-----NLPQSLKYLKIEDCSKLESLA-----ERLDNTSLEEISISVLENLKSLPADLHNLHHLQK 663 (839)
Q Consensus 594 ~l~~c~~l~~~~~~~-----~~~~~L~~L~l~~~~~l~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 663 (839)
++++|.....++... ..+++|+.+++.+|.. .+| ..+...+|+.|++++|.+.... ....+++|++
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~ 328 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLH 328 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCE
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccE
Confidence 665554332333322 3345677777776654 222 1122356888888887765432 1257788888
Q ss_pred EEecCCCCCcccCCCCCCCCCcceEecccccccc--cccccCcccccccccccccccCCccCCCC--CCCCCcceEEecC
Q 036119 664 IWIFGCPNLESFPEEGLPSTKLTELTIYDCENLK--ALPNCMHNLTSLLNLKISECPSVVSFPED--GFPTNLQSLDVHD 739 (839)
Q Consensus 664 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~ 739 (839)
|++++|...+..|..+..+++|++|++++|+..+ .+|..+..+++|+.|++++|.+...+|.. ..+++|++|++++
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 8888887777777777788888888888887654 55667788888888888888877645543 5667888888888
Q ss_pred CCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCC
Q 036119 740 LKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSE 819 (839)
Q Consensus 740 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 819 (839)
|.+.+..+.. ++++|+.|++++|... .+|..+..+++|+.|++++| +++.+|.
T Consensus 409 N~l~~~~~~~-------------------------l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N-~l~~l~~ 461 (520)
T 2z7x_B 409 NILTDTIFRC-------------------------LPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN-QLKSVPD 461 (520)
T ss_dssp SCCCGGGGGS-------------------------CCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCcchhhh-------------------------hcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCC-cCCccCH
Confidence 8877654432 1135666666666433 55555556666666666666 5555555
Q ss_pred CCC--CcccceeeecCCC
Q 036119 820 QGL--PKSLLQLHIYACP 835 (839)
Q Consensus 820 ~~~--~~sL~~L~i~~c~ 835 (839)
..+ .++|++|++++|+
T Consensus 462 ~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 462 GIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred HHhccCCcccEEECcCCC
Confidence 322 2456666666655
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-31 Score=317.16 Aligned_cols=495 Identities=15% Similarity=0.117 Sum_probs=332.9
Q ss_pred ccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccc-cccccCcCcCcEeEecCccccccccCCCCC
Q 036119 262 VEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQ 340 (839)
Q Consensus 262 ~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~ 340 (839)
.+++++| .+..|.+. .+.+..|.++++|++|+|++|..+..+ |.+|+++++|++|+|++|.+.+..|..+..
T Consensus 23 p~~l~~L------dLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 23 LNTTERL------LLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp CTTCCEE------EEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCCcCEE------ECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 4567777 33334332 233456899999999999999657777 788999999999999999998888888888
Q ss_pred CccccCCCccEEeccCccccccCCCc-----CCCCccEEeecccC--cc--cccCCCCCCccEEEeccccceeecCCCcc
Q 036119 341 EVDEVFPKLRTLSLDNCCKLQGTLPR-----RLLLLETLDITSCD--QL--LVTIQCLPALSELQIDGCKRVVFSSPHLV 411 (839)
Q Consensus 341 ~~~~~l~~L~~L~L~~~~~l~~~lp~-----~l~~L~~L~l~~~~--~l--~~~l~~l~~L~~L~l~~~~~~~~~~~~~l 411 (839)
+++|++|++++| .+.+.+|. .+++|++|++++|. .+ +..++++++|++|++++|......
T Consensus 96 -----l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~----- 164 (844)
T 3j0a_A 96 -----LFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC----- 164 (844)
T ss_dssp -----CSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC-----
T ss_pred -----CcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC-----
Confidence 999999999997 66655553 57899999999987 22 357899999999999998632210
Q ss_pred ceeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCC-
Q 036119 412 HAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSS- 490 (839)
Q Consensus 412 ~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~- 490 (839)
...+..+. .++|+.|++++|.+....|..++.+++
T Consensus 165 ------------------~~~l~~l~--------------------------~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 200 (844)
T 3j0a_A 165 ------------------EHELEPLQ--------------------------GKTLSFFSLAANSLYSRVSVDWGKCMNP 200 (844)
T ss_dssp ------------------SGGGHHHH--------------------------HCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred ------------------HHHccccc--------------------------CCccceEECCCCccccccccchhhcCCc
Confidence 00000000 037888899988887777776766665
Q ss_pred -----ccEEeecCCCCCcccCC----CCCCCCccEEEeccCcc--------ccccc-hhhhhCCCCccceEecccCCCCc
Q 036119 491 -----LTEMRIHDCASLVSFPQ----AALPSQLRSVVIEECDA--------LESLP-EAWMQNSNSSLECLAIRSCNSLV 552 (839)
Q Consensus 491 -----L~~L~l~~~~~~~~l~~----~~~~~~L~~L~l~~~~~--------l~~~~-~~~~~~~~~~L~~L~l~~~~~l~ 552 (839)
|+.|++++|......+. .....+++.+.+..+.. +.... ..+.....++|+.|++++|....
T Consensus 201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~ 280 (844)
T 3j0a_A 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280 (844)
T ss_dssp TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence 99999999854443332 22346677777763221 11111 11211223789999998887655
Q ss_pred CCC-CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhh
Q 036119 553 SFP-EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAER 631 (839)
Q Consensus 553 ~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 631 (839)
..+ .+..+++|+.|++++|... .++...+... ++|+.|++++|......+.....+++|+.|++++|......+..
T Consensus 281 ~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 357 (844)
T 3j0a_A 281 LNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGL--DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357 (844)
T ss_dssp ECSCCSSSCCCCCEEEEESCCCC-EECTTTTTTC--SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred cChhhhhcCCCCCEEECCCCcCC-CCChHHhcCC--CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh
Confidence 444 3466788999999988543 3333233222 47999999988655444444445678999999988543333333
Q ss_pred cC-CCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccc-ccccCcccccc
Q 036119 632 LD-NTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKA-LPNCMHNLTSL 709 (839)
Q Consensus 632 ~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-lp~~l~~l~~L 709 (839)
+. .++|+.|++++|.+.+ +..+++|+.|++++|... .+|.. ..+++.|++++|...+. .+..+.++++|
T Consensus 358 ~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L 428 (844)
T 3j0a_A 358 FKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHL 428 (844)
T ss_dssp SCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred hcCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCcc
Confidence 33 4889999999988753 234888999999998665 55543 35788888888764431 12235578888
Q ss_pred cccccccccCCccCCC--CCCCCCcceEEecCCCCCCccc----cccCCCccccceEEEecCCCCCcCCCC----CCccc
Q 036119 710 LNLKISECPSVVSFPE--DGFPTNLQSLDVHDLKISKPLL----EWGSNRFTSLRRFTIWGGCPDLVSPPP----FPASL 779 (839)
Q Consensus 710 ~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~l~l~~~~~~~~~~~~----~~~~L 779 (839)
+.|++++|.+....+. ...+++|++|++++|.+.+..+ ...+..+++|+.|++++| .+..++. .+++|
T Consensus 429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L 506 (844)
T 3j0a_A 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN--YLNSLPPGVFSHLTAL 506 (844)
T ss_dssp CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH--HHTTCCTTSSSSCCSC
T ss_pred ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC--cccccChhHccchhhh
Confidence 8888888877643332 1446788888888888763221 123566778888888775 2222222 35678
Q ss_pred ceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCCCCcccceeeecCCCC
Q 036119 780 TNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYACPL 836 (839)
Q Consensus 780 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~ 836 (839)
+.|++++|......+..+. ++|+.|++++| +++.+++..++ +|+.|+++++|.
T Consensus 507 ~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N-~l~~~~~~~~~-~L~~l~l~~Np~ 559 (844)
T 3j0a_A 507 RGLSLNSNRLTVLSHNDLP--ANLEILDISRN-QLLAPNPDVFV-SLSVLDITHNKF 559 (844)
T ss_dssp SEEEEESCCCSSCCCCCCC--SCCCEEEEEEE-CCCCCCSCCCS-SCCEEEEEEECC
T ss_pred heeECCCCCCCccChhhhh--ccccEEECCCC-cCCCCChhHhC-CcCEEEecCCCc
Confidence 8888888866544443333 78888888887 66666665554 788888877653
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.8e-32 Score=306.93 Aligned_cols=449 Identities=16% Similarity=0.106 Sum_probs=252.7
Q ss_pred CceeEEEeCCCcccccc-cccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc---CCC
Q 036119 294 PRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR---RLL 369 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~---~l~ 369 (839)
++|++|++++|. +..+ |.+|.++++|++|++++|.+.+..|..+.. +++|++|++++| .+.+..|. .++
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS-----LGSLEHLDLSDN-HLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTT-----CTTCCEEECTTS-CCCSCCHHHHTTCT
T ss_pred CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccc-----cccCCEEECCCC-ccCccCHHHhccCC
Confidence 567777777777 4444 566777777888888877776666666665 777778877775 55533332 466
Q ss_pred CccEEeecccC----cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCC
Q 036119 370 LLETLDITSCD----QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCP 445 (839)
Q Consensus 370 ~L~~L~l~~~~----~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 445 (839)
+|++|++++|. ..+..++.+++|++|++++|.... ..+......+++|+.|++.++.
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~-------------------~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS-------------------EIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-------------------EECTTTTTTCCEEEEEEEEETT
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCcccc-------------------ccCHhhhhcccccCeeeccCCc
Confidence 77777777665 234567777777777777765211 0011112233344444443322
Q ss_pred CcccccccccccCCCCCCcCCceEEEeccCCCCCcccccc-CCCCCccEEeecCCCCCcc----cCCCCCCCCccEEEec
Q 036119 446 QLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQAL-LTLSSLTEMRIHDCASLVS----FPQAALPSQLRSVVIE 520 (839)
Q Consensus 446 ~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~----l~~~~~~~~L~~L~l~ 520 (839)
-.... ...+..+ ++|+.|++++|.. ..+|.++ ..+++|+.|++++|...+. .+....+++|+.|++.
T Consensus 160 l~~~~------~~~l~~l-~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 231 (549)
T 2z81_A 160 LRNYQ------SQSLKSI-RDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231 (549)
T ss_dssp CCEEC------TTTTTTC-SEEEEEEEECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEE
T ss_pred ccccC------hhhhhcc-ccCceEecccCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecc
Confidence 11000 0111222 3566666666554 3333332 3466666666666543321 1112235566666666
Q ss_pred cCccccccchhhh--hCCCCccceEecccCCCCcC--C-----CCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcc
Q 036119 521 ECDALESLPEAWM--QNSNSSLECLAIRSCNSLVS--F-----PEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLE 591 (839)
Q Consensus 521 ~~~~l~~~~~~~~--~~~~~~L~~L~l~~~~~l~~--~-----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~ 591 (839)
++......+..+. ...+++|+.+++++|..... + .....+++ ++
T Consensus 232 ~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~---------------------------L~ 284 (549)
T 2z81_A 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK---------------------------VE 284 (549)
T ss_dssp SCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT---------------------------CC
T ss_pred ccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc---------------------------cc
Confidence 6543222221110 02235556666655532210 0 01122334 44
Q ss_pred eEEEeecCCcccccC-----CCCcccccceeEeccCCCchhhhhhc--CCCCcceeeecccccccCccc---cccCCCCC
Q 036119 592 HLEVSYCSNLALLSR-----NGNLPQSLKYLKIEDCSKLESLAERL--DNTSLEEISISVLENLKSLPA---DLHNLHHL 661 (839)
Q Consensus 592 ~L~l~~c~~l~~~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~---~~~~l~~L 661 (839)
.+.+.++........ .....++|+.|++++|. +..+|..+ ..++|+.|++++|++.+.+|. .+..+++|
T Consensus 285 ~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L 363 (549)
T 2z81_A 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363 (549)
T ss_dssp EEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTC
T ss_pred cccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccC
Confidence 444444322111000 01122457777777764 33444433 357777777777777665532 35677788
Q ss_pred CeEEecCCCCCcccC--CCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecC
Q 036119 662 QKIWIFGCPNLESFP--EEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHD 739 (839)
Q Consensus 662 ~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 739 (839)
++|++++|......+ ..+..+++|++|++++|+. ..+|..+..+++|++|++++|.+. .+|. ..+++|++|++++
T Consensus 364 ~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~-~~~~~L~~L~Ls~ 440 (549)
T 2z81_A 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKT-CIPQTLEVLDVSN 440 (549)
T ss_dssp CEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC-CCCCSCCCCCTTCCEEECTTSCCS-CCCT-TSCTTCSEEECCS
T ss_pred cEEEccCCcccccccchhhhhcCCCCCEEECCCCCC-ccCChhhcccccccEEECCCCCcc-cccc-hhcCCceEEECCC
Confidence 888888876543221 2355667788888887754 467777777788888888887764 3333 2346788888888
Q ss_pred CCCCCccccccCCCccccceEEEecCCCCCcCCCC--CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCc
Q 036119 740 LKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP--FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKL 814 (839)
Q Consensus 740 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l 814 (839)
|++.+.. ..+++|+.|++++| .+..+|. .+++|+.|++++|...+..|..+..+++|+.|++++|+-.
T Consensus 441 N~l~~~~-----~~l~~L~~L~Ls~N--~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 441 NNLDSFS-----LFLPRLQELYISRN--KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp SCCSCCC-----CCCTTCCEEECCSS--CCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred CChhhhc-----ccCChhcEEECCCC--ccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 8776532 35667777777764 2334443 3567888888888776666666777888888888888643
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.1e-31 Score=302.00 Aligned_cols=468 Identities=16% Similarity=0.162 Sum_probs=326.9
Q ss_pred eeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc---CCCCcc
Q 036119 296 LRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR---RLLLLE 372 (839)
Q Consensus 296 L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~---~l~~L~ 372 (839)
..+.+.+++. +..+|..+. ++|++|++++|.+.+..|..+.. +++|++|++++| .+.+..|. .+++|+
T Consensus 7 ~~~c~~~~~~-l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~ 77 (549)
T 2z81_A 7 SGVCDGRSRS-FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRA-----CANLQVLILKSS-RINTIEGDAFYSLGSLE 77 (549)
T ss_dssp TSEEECTTSC-CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSS-----CTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred CceEECCCCc-cccccccCC--CCccEEECcCCccCccChhhhhc-----CCcccEEECCCC-CcCccChhhccccccCC
Confidence 3456788888 899998775 79999999999998777777777 999999999996 66644443 567888
Q ss_pred EEeecccC--ccc-ccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCccc
Q 036119 373 TLDITSCD--QLL-VTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLIS 449 (839)
Q Consensus 373 ~L~l~~~~--~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 449 (839)
+|++++|. .++ ..++.+++|++|++++|....+.. ......+
T Consensus 78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------------------~~~~~~l---------------- 122 (549)
T 2z81_A 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV-------------------TSLFPNL---------------- 122 (549)
T ss_dssp EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS-------------------SCSCTTC----------------
T ss_pred EEECCCCccCccCHHHhccCCCCcEEECCCCcccccch-------------------hhhhhcc----------------
Confidence 99998886 343 448888999999998876322100 0001111
Q ss_pred ccccccccCCCCCCcCCceEEEeccCCCCCccc-cccCCCCCccEEeecCCCCCcccCC-CCCCCCccEEEeccCccccc
Q 036119 450 LVTVEEHDQQQPELPCRLQFLELSCCEGLTRLP-QALLTLSSLTEMRIHDCASLVSFPQ-AALPSQLRSVVIEECDALES 527 (839)
Q Consensus 450 ~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~ 527 (839)
++|+.|++++|...+.+| ..++++++|++|++++|...+..+. ...+++|+.|+++++.. ..
T Consensus 123 ---------------~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~ 186 (549)
T 2z81_A 123 ---------------TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AF 186 (549)
T ss_dssp ---------------TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-TT
T ss_pred ---------------CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc-cc
Confidence 467777777776445554 4677777788888877765544443 33467777777777653 33
Q ss_pred cchhhhhCCCCccceEecccCCCCcC----CCCCCCCCCccEEEEcCCCCCcCCchhhhc-ccCCCCcceEEEeecCCcc
Q 036119 528 LPEAWMQNSNSSLECLAIRSCNSLVS----FPEVALPSQLRTIIIGGCHALESLPEAWMH-NELPATLEHLEVSYCSNLA 602 (839)
Q Consensus 528 ~~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~L~~L~l~~c~~l~ 602 (839)
++..+. ..+++|+.|++++|..... .+....+++|+.|+++++......+..... .....+++.+++.+|....
T Consensus 187 ~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 187 LLEIFA-DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp HHHHHH-HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred cchhhH-hhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 443332 3467888888888765442 122345678888888887432221111110 0111478888888885322
Q ss_pred c--cc----CCCCcccccceeEeccCCCchhh-----hh-hcCCCCcceeeecccccccCccccc-cCCCCCCeEEecCC
Q 036119 603 L--LS----RNGNLPQSLKYLKIEDCSKLESL-----AE-RLDNTSLEEISISVLENLKSLPADL-HNLHHLQKIWIFGC 669 (839)
Q Consensus 603 ~--~~----~~~~~~~~L~~L~l~~~~~l~~~-----~~-~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~ 669 (839)
. ++ ......++++.|.+.++...... +. .....+|+.|++++|.+. .+|..+ ..+++|++|++++|
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCC
Confidence 1 10 00123467899999887533211 11 011368999999999874 677666 57999999999999
Q ss_pred CCCcccC---CCCCCCCCcceEeccccccccccc---ccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCC
Q 036119 670 PNLESFP---EEGLPSTKLTELTIYDCENLKALP---NCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKI 742 (839)
Q Consensus 670 ~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~lp---~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~ 742 (839)
...+.+| ..+..+++|++|++++|+... ++ ..+..+++|++|++++|++. .+|.. ..+++|++|++++|.+
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCC
T ss_pred ccccccccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCc
Confidence 8877653 346778999999999997544 33 45889999999999999887 56654 6789999999999998
Q ss_pred CCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCCC
Q 036119 743 SKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGL 822 (839)
Q Consensus 743 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 822 (839)
.+... ...++|+.|++++| .+..++..+++|+.|++++|... .+|. ...+++|+.|++++| +++.+++..+
T Consensus 423 ~~l~~----~~~~~L~~L~Ls~N--~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~ 493 (549)
T 2z81_A 423 RVVKT----CIPQTLEVLDVSNN--NLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRN-QLKSVPDGIF 493 (549)
T ss_dssp SCCCT----TSCTTCSEEECCSS--CCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSS-CCCCCCTTGG
T ss_pred ccccc----hhcCCceEEECCCC--ChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCC-ccCCcCHHHH
Confidence 74321 22368999999986 44555566779999999999664 7875 467999999999998 7788776533
Q ss_pred --CcccceeeecCCCC
Q 036119 823 --PKSLLQLHIYACPL 836 (839)
Q Consensus 823 --~~sL~~L~i~~c~~ 836 (839)
.++|+.|++++|+.
T Consensus 494 ~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 494 DRLTSLQKIWLHTNPW 509 (549)
T ss_dssp GGCTTCCEEECCSSCB
T ss_pred hcCcccCEEEecCCCc
Confidence 46899999999974
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-31 Score=304.85 Aligned_cols=435 Identities=17% Similarity=0.136 Sum_probs=204.0
Q ss_pred HHhcCCCceeEEEeCCCcccccc-cccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC-
Q 036119 288 MLLNHLPRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP- 365 (839)
Q Consensus 288 ~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp- 365 (839)
..|..+++|++|++++|. +..+ |..|+++++|++|++++|.+.+..|..+.. +++|++|++++| .+. .+|
T Consensus 46 ~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~-~l~~ 117 (570)
T 2z63_A 46 YSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-----LSSLQKLVAVET-NLA-SLEN 117 (570)
T ss_dssp TTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-----CTTCCEEECTTS-CCC-CSTT
T ss_pred hHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCccCHhhhcC-----cccccccccccc-ccc-cCCC
Confidence 346667777777777776 4444 355667777777777777765555555555 777777777765 444 333
Q ss_pred ---cCCCCccEEeecccC----cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCc
Q 036119 366 ---RRLLLLETLDITSCD----QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNW 438 (839)
Q Consensus 366 ---~~l~~L~~L~l~~~~----~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~ 438 (839)
..+.+|++|++++|. .+|..++.+++|++|++++|....+.. ..+..
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~--- 171 (570)
T 2z63_A 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-----------------------TDLRV--- 171 (570)
T ss_dssp CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG-----------------------GGGHH---
T ss_pred ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH-----------------------HHccc---
Confidence 245566666666654 245566666666666666654221100 00000
Q ss_pred eecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCc-ccCC-CCCCCCc--
Q 036119 439 LQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLV-SFPQ-AALPSQL-- 514 (839)
Q Consensus 439 L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~l~~-~~~~~~L-- 514 (839)
+..++...+.|++++|.+....+..+... +|+.|++++|.... .++. ...++.+
T Consensus 172 ---------------------l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~ 229 (570)
T 2z63_A 172 ---------------------LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229 (570)
T ss_dssp ---------------------HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEE
T ss_pred ---------------------hhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccce
Confidence 00010122688888888765555555544 78999888763211 0000 0112222
Q ss_pred ------------------------------cEEEeccCcccc-ccchhhhhCCCCccceEecccCCCCcCCCC-CCCCCC
Q 036119 515 ------------------------------RSVVIEECDALE-SLPEAWMQNSNSSLECLAIRSCNSLVSFPE-VALPSQ 562 (839)
Q Consensus 515 ------------------------------~~L~l~~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~ 562 (839)
+.+.+.++..+. ..+..+ ..+++|+.|++++|... .+|. .... +
T Consensus 230 ~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~l~-~l~~~~~~~-~ 305 (570)
T 2z63_A 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF--NCLTNVSSFSLVSVTIE-RVKDFSYNF-G 305 (570)
T ss_dssp EEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT--GGGTTCSEEEEESCEEC-SCCBCCSCC-C
T ss_pred eeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhh--cCcCcccEEEecCccch-hhhhhhccC-C
Confidence 223333321111 111111 22344555555444322 2331 2222 4
Q ss_pred ccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhh---hhhcCCCCcce
Q 036119 563 LRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESL---AERLDNTSLEE 639 (839)
Q Consensus 563 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~~~L~~ 639 (839)
|+.|++.+|.. ..+|.. .+ ++|+.|++.+|......+. ..+++|+.|++++|...... ......++|++
T Consensus 306 L~~L~l~~n~~-~~l~~~----~l-~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 377 (570)
T 2z63_A 306 WQHLELVNCKF-GQFPTL----KL-KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377 (570)
T ss_dssp CSEEEEESCBC-SSCCBC----BC-SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCE
T ss_pred ccEEeeccCcc-cccCcc----cc-cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCE
Confidence 55555555432 233321 11 2455555554443332222 12234555555444322111 11122344444
Q ss_pred eeecccccccCccccccCCCCCCeEEecCCCCCcccC-CCCCCCCCcceEecccccccccccccCccccccccccccccc
Q 036119 640 ISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFP-EEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECP 718 (839)
Q Consensus 640 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 718 (839)
|++++|.+.+..+ .+..+++|++|++++|......+ ..+..+++|++|++++|...+..|..+..+++|++|++++|.
T Consensus 378 L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 456 (570)
T 2z63_A 378 LDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456 (570)
T ss_dssp EECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred EECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCc
Confidence 5554444433222 24444445555554444333222 233344445555554444444444444444445555554444
Q ss_pred CC-ccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccC
Q 036119 719 SV-VSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSI 796 (839)
Q Consensus 719 ~~-~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 796 (839)
+. ..+|.. ..+++|++|++++|.+.+..+.. +. .+++|+.|++++|...+..+..
T Consensus 457 l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~-~~----------------------~l~~L~~L~l~~n~l~~~~~~~ 513 (570)
T 2z63_A 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-FN----------------------SLSSLQVLNMASNQLKSVPDGI 513 (570)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-TT----------------------TCTTCCEEECCSSCCSCCCTTT
T ss_pred CccccchhhhhcccCCCEEECCCCccccCChhh-hh----------------------cccCCCEEeCCCCcCCCCCHHH
Confidence 43 123322 33444444444444444322211 11 1346777777777655555555
Q ss_pred CCCCCccCeeeccCCCCc
Q 036119 797 GENLTSLKTLRLSDCPKL 814 (839)
Q Consensus 797 ~~~l~~L~~L~l~~c~~l 814 (839)
+..+++|+.|++++|+--
T Consensus 514 ~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 514 FDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TTTCTTCCEEECCSSCBC
T ss_pred hhcccCCcEEEecCCccc
Confidence 667777777777776433
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.98 E-value=7.1e-32 Score=310.08 Aligned_cols=431 Identities=15% Similarity=0.168 Sum_probs=249.6
Q ss_pred CceeEEEeCCCcccccccccccCcCcCcEeEecCccc---------------------------------cccccCCCCC
Q 036119 294 PRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKW---------------------------------EEWIPCGAGQ 340 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~---------------------------------~~~~p~~~~~ 340 (839)
.+++.|+|+++.+.+.+|.+|++|++|++|+|++|.+ .+..|..+..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 4678888888886677888888888888888888854 1111111110
Q ss_pred --------------CccccCCCccEEeccC-ccccccCCCc---CCCCccEEeecccC--c------------------c
Q 036119 341 --------------EVDEVFPKLRTLSLDN-CCKLQGTLPR---RLLLLETLDITSCD--Q------------------L 382 (839)
Q Consensus 341 --------------~~~~~l~~L~~L~L~~-~~~l~~~lp~---~l~~L~~L~l~~~~--~------------------l 382 (839)
........++.+.+.. ++++++ +|. .+++|++|+++++. . +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 0000012233333332 457776 885 56788888888776 3 6
Q ss_pred cccCC--CCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCC
Q 036119 383 LVTIQ--CLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQ 460 (839)
Q Consensus 383 ~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 460 (839)
|..++ ++++|++|++++|.... .++..+.+
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~-----------------------~~p~~l~~------------------------- 271 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLT-----------------------KLPTFLKA------------------------- 271 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCS-----------------------SCCTTTTT-------------------------
T ss_pred chhhhhcccCCCCEEEecCCcCCc-----------------------cChHHHhc-------------------------
Confidence 66666 77777777777664221 01111111
Q ss_pred CCCcCCceEEEeccCC-CCC-ccccccCCC------CCccEEeecCCCCCcccCC---CCCCCCccEEEeccCccccccc
Q 036119 461 PELPCRLQFLELSCCE-GLT-RLPQALLTL------SSLTEMRIHDCASLVSFPQ---AALPSQLRSVVIEECDALESLP 529 (839)
Q Consensus 461 ~~l~~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~l~~---~~~~~~L~~L~l~~~~~l~~~~ 529 (839)
+ ++|+.|++++|. +.+ .+|..++.+ ++|+.|++++|... .+|. ...+++|+.|++++|.....+|
T Consensus 272 --l-~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 272 --L-PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp --C-SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred --C-CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 1 366777777776 544 566666554 67777777776443 5554 4456666666666665443554
Q ss_pred hhhhhCCCCccceEecccCCCCcCCC-CCCCCCC-ccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCC
Q 036119 530 EAWMQNSNSSLECLAIRSCNSLVSFP-EVALPSQ-LRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRN 607 (839)
Q Consensus 530 ~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 607 (839)
.+ ..+++|+.|++++|... .+| .+..+++ |+.|++++|. +..+|..+...
T Consensus 348 -~~--~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~----------------------- 399 (636)
T 4eco_A 348 -AF--GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAK----------------------- 399 (636)
T ss_dssp -CC--EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTT-----------------------
T ss_pred -hh--CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc-Ccccchhhhhc-----------------------
Confidence 22 33456666666665433 333 2233344 5555555543 22333211100
Q ss_pred CCcccccceeEeccCCCchhhhhhc--------CCCCcceeeecccccccCcccc-ccCCCCCCeEEecCCCCCcccCCC
Q 036119 608 GNLPQSLKYLKIEDCSKLESLAERL--------DNTSLEEISISVLENLKSLPAD-LHNLHHLQKIWIFGCPNLESFPEE 678 (839)
Q Consensus 608 ~~~~~~L~~L~l~~~~~l~~~~~~~--------~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~ 678 (839)
..++|+.|++++|......|..+ ..++|+.|++++|.+. .+|.. +..+++|++|++++|.+. .+|..
T Consensus 400 --~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~ 475 (636)
T 4eco_A 400 --SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKN 475 (636)
T ss_dssp --CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSS
T ss_pred --ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHH
Confidence 01246666666665544443322 2357777777777776 34433 445777888888877665 55554
Q ss_pred CCCC--------CCcceEecccccccccccccCc--ccccccccccccccCCccCCCC-CCCCCcceEEecC------CC
Q 036119 679 GLPS--------TKLTELTIYDCENLKALPNCMH--NLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHD------LK 741 (839)
Q Consensus 679 ~~~~--------~~L~~L~l~~~~~l~~lp~~l~--~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~------~~ 741 (839)
.... ++|++|++++|... .+|..+. .+++|+.|++++|++.. +|.. ..+++|++|++++ |.
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred HhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCc
Confidence 3332 27777888777544 6777665 77777778887777765 5543 5677777777754 33
Q ss_pred CCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCC
Q 036119 742 ISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQG 821 (839)
Q Consensus 742 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 821 (839)
+.+.+|.. +. -+++|+.|++++|.. +.+|..+. ++|+.|++++| .+..+...+
T Consensus 554 l~~~~p~~-l~----------------------~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N-~l~~~~~~~ 606 (636)
T 4eco_A 554 TLREWPEG-IT----------------------LCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDN-PNISIDLSY 606 (636)
T ss_dssp CCCCCCTT-GG----------------------GCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSC-TTCEEECTT
T ss_pred ccccChHH-Hh----------------------cCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCC-CCccccHHh
Confidence 33333321 01 134788888888877 77887654 78999999998 445554333
Q ss_pred CC----------cccceeeecCCCCCC
Q 036119 822 LP----------KSLLQLHIYACPLIE 838 (839)
Q Consensus 822 ~~----------~sL~~L~i~~c~~l~ 838 (839)
+. ...+..++.+|+.|+
T Consensus 607 ~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 607 VCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp THHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred cchhhhcccceeecCCccccCCCcccc
Confidence 31 122456788998875
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.98 E-value=5.7e-31 Score=306.58 Aligned_cols=429 Identities=16% Similarity=0.147 Sum_probs=255.1
Q ss_pred CceeEEEeCCCcccccccccccCcCcCcEeEe-cCccccccccCCCCCC-------------------------------
Q 036119 294 PRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNL-SRTKWEEWIPCGAGQE------------------------------- 341 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L-~~~~~~~~~p~~~~~~------------------------------- 341 (839)
.++..|+|+++.+.+.+|.+|++|++|++|+| ++|.+.+..|......
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999977899999999999999999 8887655433221000
Q ss_pred -------------cc--ccCCCccEEeccC-ccccccCCCc---CCCCccEEeecccC--c------------------c
Q 036119 342 -------------VD--EVFPKLRTLSLDN-CCKLQGTLPR---RLLLLETLDITSCD--Q------------------L 382 (839)
Q Consensus 342 -------------~~--~~l~~L~~L~L~~-~~~l~~~lp~---~l~~L~~L~l~~~~--~------------------l 382 (839)
.+ .....++.+.+.. ++.+++ +|. .+++|+.|+++++. . +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00 0122333333333 246665 885 56788888888775 2 3
Q ss_pred cccCC--CCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCC
Q 036119 383 LVTIQ--CLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQ 460 (839)
Q Consensus 383 ~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 460 (839)
|..++ .++
T Consensus 482 P~~l~f~~L~---------------------------------------------------------------------- 491 (876)
T 4ecn_A 482 NEELSWSNLK---------------------------------------------------------------------- 491 (876)
T ss_dssp TSCCCGGGCT----------------------------------------------------------------------
T ss_pred ChhhhhccCC----------------------------------------------------------------------
Confidence 33333 444
Q ss_pred CCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCC-CCc-ccC--------CCCCCCCccEEEeccCccccccch
Q 036119 461 PELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCA-SLV-SFP--------QAALPSQLRSVVIEECDALESLPE 530 (839)
Q Consensus 461 ~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~l~--------~~~~~~~L~~L~l~~~~~l~~~~~ 530 (839)
+|+.|++++|.+.+.+|..++++++|+.|++++|. ..+ .+| ....+++|+.|++++|... .+|.
T Consensus 492 -----~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~ 565 (876)
T 4ecn_A 492 -----DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA 565 (876)
T ss_dssp -----TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred -----CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC
Confidence 44555555555445555555555555555555554 211 122 1223445555555555433 4443
Q ss_pred --hhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCC-cceEEEeecCCcccccCC
Q 036119 531 --AWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPAT-LEHLEVSYCSNLALLSRN 607 (839)
Q Consensus 531 --~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~ 607 (839)
.+ ..+++|+.|++++|... .+|.+..+++|+.|++++|.. ..+|..+... ++ |+.|++++|... .++..
T Consensus 566 ~~~l--~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l-~~lp~~l~~l---~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 566 SASL--QKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQI-EEIPEDFCAF---TDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp HHHH--TTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCC-SCCCTTSCEE---CTTCCEEECCSSCCC-SCCSC
T ss_pred hhhh--hcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCcc-ccchHHHhhc---cccCCEEECcCCCCC-cCchh
Confidence 22 34555666666555443 455445555566666655542 2444332221 23 555555555422 33332
Q ss_pred CCcc--cccceeEeccCCCchhhhhhc------CCCCcceeeecccccccCccccc-cCCCCCCeEEecCCCCCcccCCC
Q 036119 608 GNLP--QSLKYLKIEDCSKLESLAERL------DNTSLEEISISVLENLKSLPADL-HNLHHLQKIWIFGCPNLESFPEE 678 (839)
Q Consensus 608 ~~~~--~~L~~L~l~~~~~l~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~ 678 (839)
.... ++|+.|++++|.....++... ..++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+. .+|..
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 715 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPEN 715 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence 2222 237777777776544333211 2357888888888876 455544 47888888888888655 66654
Q ss_pred CCC--------CCCcceEecccccccccccccCc--ccccccccccccccCCccCCCC-CCCCCcceEEecCCC------
Q 036119 679 GLP--------STKLTELTIYDCENLKALPNCMH--NLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLK------ 741 (839)
Q Consensus 679 ~~~--------~~~L~~L~l~~~~~l~~lp~~l~--~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~------ 741 (839)
... +++|+.|++++|+.. .+|..+. .+++|+.|++++|++.. +|.. ..+++|+.|++++|+
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred HhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccc
Confidence 433 237888888888544 6777776 78888888888888765 5543 667888888887643
Q ss_pred CCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCC
Q 036119 742 ISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQG 821 (839)
Q Consensus 742 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 821 (839)
+.+.+|.. +. -+++|+.|++++|.. +.+|..+. ++|+.|+|++|+ +..+....
T Consensus 794 l~~~ip~~-l~----------------------~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~-l~~i~~~~ 846 (876)
T 4ecn_A 794 ILRQWPTG-IT----------------------TCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP-NISIDVTS 846 (876)
T ss_dssp CCCCCCTT-GG----------------------GCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT-TCEEECGG
T ss_pred ccccChHH-Hh----------------------cCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC-CCccChHH
Confidence 33333221 00 135799999999977 88887764 699999999995 55554333
Q ss_pred CCc-------c---cceeeecCCCCCC
Q 036119 822 LPK-------S---LLQLHIYACPLIE 838 (839)
Q Consensus 822 ~~~-------s---L~~L~i~~c~~l~ 838 (839)
+.+ . -+..+|.+|+.|+
T Consensus 847 ~~~~~~~~~~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 847 VCPYIEAGMYVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp GHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred ccccccchheeecCCCccccCCCCCcc
Confidence 311 1 1334688998764
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=298.10 Aligned_cols=473 Identities=15% Similarity=0.070 Sum_probs=285.2
Q ss_pred CceeEEEeCCCccccccc-ccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc---CCC
Q 036119 294 PRLRVFSLCGYRNIFNLP-NEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR---RLL 369 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~---~l~ 369 (839)
+++++|++++|. +..++ .+|.++++|++|++++|.+.+..|..+.. +++|++|++++| .+++..|. .+.
T Consensus 28 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~-----l~~L~~L~L~~n-~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-----LSHLSTLILTGN-PIQSLALGAFSGLS 100 (570)
T ss_dssp SSCCEEECCSCC-CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTT-----CTTCCEEECTTC-CCCEECTTTTTTCT
T ss_pred ccccEEEccCCc-cCccChhHhhCCCCceEEECCCCcCCccCcccccC-----chhCCEEeCcCC-cCCccCHhhhcCcc
Confidence 478999999998 66554 57889999999999999887666666666 899999999986 55533332 456
Q ss_pred CccEEeecccC--cccc-cCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCC
Q 036119 370 LLETLDITSCD--QLLV-TIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQ 446 (839)
Q Consensus 370 ~L~~L~l~~~~--~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 446 (839)
+|++|+++++. .++. .++.+++|++|++++|....+. ++..
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~----------------------lp~~-------------- 144 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK----------------------LPEY-------------- 144 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC----------------------CCGG--------------
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceec----------------------Chhh--------------
Confidence 77777777665 2332 4677777777777776422100 0000
Q ss_pred cccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCc----cEEeecCCCCCcccCCCCCCCCccEEEeccC
Q 036119 447 LISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSL----TEMRIHDCASLVSFPQAALPSQLRSVVIEEC 522 (839)
Q Consensus 447 l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~ 522 (839)
+..+ ++|+.|++++|.+....+..++.+++| ..|++++|......+......+|+.|++.++
T Consensus 145 -------------~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 210 (570)
T 2z63_A 145 -------------FSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210 (570)
T ss_dssp -------------GGGC-TTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred -------------hccc-CCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccc
Confidence 1111 588999999998866666677777777 8899999865554444444558999999887
Q ss_pred cccc-ccchhhhhCCCCccceEecccC-----CCCcCCCC--CCCC--CCccEEEEcCCCCCcCCchhhhcccCCCCcce
Q 036119 523 DALE-SLPEAWMQNSNSSLECLAIRSC-----NSLVSFPE--VALP--SQLRTIIIGGCHALESLPEAWMHNELPATLEH 592 (839)
Q Consensus 523 ~~l~-~~~~~~~~~~~~~L~~L~l~~~-----~~l~~~~~--~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~ 592 (839)
.... .++..+ ..++.++...+... ..+..++. +..+ ..++.+.+.++..+.......+... ++|+.
T Consensus 211 ~~~~~~~~~~~--~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l--~~L~~ 286 (570)
T 2z63_A 211 FDSLNVMKTCI--QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL--TNVSS 286 (570)
T ss_dssp CSCTTHHHHHH--HTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGG--TTCSE
T ss_pred cccccchhhhh--cCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCc--CcccE
Confidence 4221 112111 23344433332211 01111110 0000 1244555554422222111111111 35666
Q ss_pred EEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCC
Q 036119 593 LEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNL 672 (839)
Q Consensus 593 L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 672 (839)
|++.+|... .++...... +|+.|++.+|... .++. ...++|+.|++++|...+..+. ..+++|++|++++|...
T Consensus 287 L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~ 360 (570)
T 2z63_A 287 FSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLS 360 (570)
T ss_dssp EEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCB
T ss_pred EEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccC
Confidence 666666422 333322223 5666666666433 3333 2446667777776666554443 45667777777776554
Q ss_pred ccc--CCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCC--CCCCCCcceEEecCCCCCCcccc
Q 036119 673 ESF--PEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPE--DGFPTNLQSLDVHDLKISKPLLE 748 (839)
Q Consensus 673 ~~~--~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~ 748 (839)
... +..+..+++|++|++++|...+ +|..+..+++|++|++++|.+....+. ...+++|++|++++|.+.+..+.
T Consensus 361 ~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 439 (570)
T 2z63_A 361 FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439 (570)
T ss_dssp EEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred ccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh
Confidence 322 3344556677777777765433 333466677777777777666544442 24566777777777766654332
Q ss_pred ccCCCccccceEEEecCCCCCcCCC---CCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCCC--C
Q 036119 749 WGSNRFTSLRRFTIWGGCPDLVSPP---PFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGL--P 823 (839)
Q Consensus 749 ~~~~~l~~L~~l~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~ 823 (839)
.+..+++|+.|++++|......+| ..+++|+.|++++|...+..|..+..+++|+.|++++| +++.+++..+ .
T Consensus 440 -~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l 517 (570)
T 2z63_A 440 -IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRL 517 (570)
T ss_dssp -TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred -hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcc
Confidence 345566777777766422111122 23568999999999888777888899999999999999 7888876543 3
Q ss_pred cccceeeecCCCC
Q 036119 824 KSLLQLHIYACPL 836 (839)
Q Consensus 824 ~sL~~L~i~~c~~ 836 (839)
++|++|++++|+.
T Consensus 518 ~~L~~L~l~~N~~ 530 (570)
T 2z63_A 518 TSLQKIWLHTNPW 530 (570)
T ss_dssp TTCCEEECCSSCB
T ss_pred cCCcEEEecCCcc
Confidence 6899999999763
No 18
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=8.4e-31 Score=287.39 Aligned_cols=416 Identities=21% Similarity=0.240 Sum_probs=195.3
Q ss_pred CCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCcc
Q 036119 293 LPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLE 372 (839)
Q Consensus 293 l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~ 372 (839)
.++|++|++++|. ++.+|.+|+++++|++|++++|.+.+.+|.+++. +++|+.+++.+|.. .+++
T Consensus 10 ~~~L~~L~l~~n~-l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~-----l~~L~~l~l~~c~~---------~~l~ 74 (454)
T 1jl5_A 10 NTFLQEPLRHSSN-LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGE-----QREMAVSRLRDCLD---------RQAH 74 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCC-----CHHHHHHHHHHHHH---------HTCS
T ss_pred cccchhhhcccCc-hhhCChhHhcccchhhhhccCCcccccCCccccc-----chhcchhhhhhhhc---------cCCC
Confidence 5889999999999 7999999999999999999999999899998887 77764444443310 2233
Q ss_pred EEeecccC--cccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccc
Q 036119 373 TLDITSCD--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISL 450 (839)
Q Consensus 373 ~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 450 (839)
+|+++++. .+|. ..++|++|++++|.... ++..+++|+.|+++++. +
T Consensus 75 ~L~l~~~~l~~lp~---~~~~L~~L~l~~n~l~~------------------------lp~~~~~L~~L~l~~n~-l--- 123 (454)
T 1jl5_A 75 ELELNNLGLSSLPE---LPPHLESLVASCNSLTE------------------------LPELPQSLKSLLVDNNN-L--- 123 (454)
T ss_dssp EEECTTSCCSCCCS---CCTTCSEEECCSSCCSS------------------------CCCCCTTCCEEECCSSC-C---
T ss_pred EEEecCCccccCCC---CcCCCCEEEccCCcCCc------------------------cccccCCCcEEECCCCc-c---
Confidence 44443332 1111 12345555555443211 11112334444443321 0
Q ss_pred cccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccch
Q 036119 451 VTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPE 530 (839)
Q Consensus 451 ~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~ 530 (839)
..++.+|++|+.|++++|.+. .+| .++.+++|++|++++|. ++.+|. .+++|+.|++++|. ++.+|.
T Consensus 124 -------~~l~~~~~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~-l~~lp~--~~~~L~~L~L~~n~-l~~l~~ 190 (454)
T 1jl5_A 124 -------KALSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNS-LKKLPD--LPPSLEFIAAGNNQ-LEELPE 190 (454)
T ss_dssp -------SCCCSCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CSSCCC
T ss_pred -------CcccCCCCCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCc-CcccCC--CcccccEEECcCCc-CCcCcc
Confidence 122333357888888887774 466 47788888888888774 333443 23566777766664 233442
Q ss_pred hhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCc
Q 036119 531 AWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNL 610 (839)
Q Consensus 531 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 610 (839)
+ ..+++|+.|++++|... .+|. .+++|+.|++++| . +..++. ...
T Consensus 191 -~--~~l~~L~~L~l~~N~l~-~l~~--~~~~L~~L~l~~n---------------------------~-l~~lp~-~~~ 235 (454)
T 1jl5_A 191 -L--QNLPFLTAIYADNNSLK-KLPD--LPLSLESIVAGNN---------------------------I-LEELPE-LQN 235 (454)
T ss_dssp -C--TTCTTCCEEECCSSCCS-SCCC--CCTTCCEEECCSS---------------------------C-CSSCCC-CTT
T ss_pred -c--cCCCCCCEEECCCCcCC-cCCC--CcCcccEEECcCC---------------------------c-CCcccc-cCC
Confidence 1 44556666666555322 2321 1234444444444 2 122222 222
Q ss_pred ccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEec
Q 036119 611 PQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTI 690 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 690 (839)
+++|+.|++++|... .++. ..++|+.|++++|++.+ +|. .+++|++|++++|...+ +|.. .++|+.|++
T Consensus 236 l~~L~~L~l~~N~l~-~l~~--~~~~L~~L~l~~N~l~~-l~~---~~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l 304 (454)
T 1jl5_A 236 LPFLTTIYADNNLLK-TLPD--LPPSLEALNVRDNYLTD-LPE---LPQSLTFLDVSENIFSG-LSEL---PPNLYYLNA 304 (454)
T ss_dssp CTTCCEEECCSSCCS-SCCS--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSE-ESCC---CTTCCEEEC
T ss_pred CCCCCEEECCCCcCC-cccc--cccccCEEECCCCcccc-cCc---ccCcCCEEECcCCccCc-ccCc---CCcCCEEEC
Confidence 356777777776432 2332 13678888888887755 443 24778888888886543 3321 257888888
Q ss_pred ccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCc
Q 036119 691 YDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLV 770 (839)
Q Consensus 691 ~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 770 (839)
++|...+ ++.. .++|+.|++++|.+.. +|. .+++|++|++++|.+.+ ++. .+++|+.|++++| .+.
T Consensus 305 ~~N~l~~-i~~~---~~~L~~L~Ls~N~l~~-lp~--~~~~L~~L~L~~N~l~~-lp~----~l~~L~~L~L~~N--~l~ 370 (454)
T 1jl5_A 305 SSNEIRS-LCDL---PPSLEELNVSNNKLIE-LPA--LPPRLERLIASFNHLAE-VPE----LPQNLKQLHVEYN--PLR 370 (454)
T ss_dssp CSSCCSE-ECCC---CTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSS--CCS
T ss_pred cCCcCCc-ccCC---cCcCCEEECCCCcccc-ccc--cCCcCCEEECCCCcccc-ccc----hhhhccEEECCCC--CCC
Confidence 8876443 3321 1478888888887654 554 36788888888887764 332 3566666666653 333
Q ss_pred CCCCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCCCCcccceeeecCCC
Q 036119 771 SPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYACP 835 (839)
Q Consensus 771 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~ 835 (839)
.++.+|..+..|. .|...+.+|. .+++|+.|++++| .++.++. +|++++.|.+.+|.
T Consensus 371 ~l~~ip~~l~~L~--~n~~~~~i~~---~~~~L~~L~ls~N-~l~~~~~--iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 371 EFPDIPESVEDLR--MNSHLAEVPE---LPQNLKQLHVETN-PLREFPD--IPESVEDLRMNSER 427 (454)
T ss_dssp SCCCCCTTCCEEE--CCC-----------------------------------------------
T ss_pred cCCCChHHHHhhh--hccccccccc---ccCcCCEEECCCC-cCCcccc--chhhHhheeCcCcc
Confidence 4444455555443 2334444443 2488999999998 6666644 77889999888764
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=5.1e-31 Score=307.00 Aligned_cols=105 Identities=23% Similarity=0.236 Sum_probs=80.1
Q ss_pred CcceeeecccccccCcccccc--CCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccc------ccccccccccCcccc
Q 036119 636 SLEEISISVLENLKSLPADLH--NLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYD------CENLKALPNCMHNLT 707 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~lp~~l~~l~ 707 (839)
+|+.|++++|++. .+|..+. .+++|+.|++++|.+.. +|..+..+++|+.|++++ |...+.+|..+.+++
T Consensus 729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 6777777777665 5666665 78888888888886655 677777778888888866 556777888888888
Q ss_pred cccccccccccCCccCCCCCCCCCcceEEecCCCCCC
Q 036119 708 SLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 708 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 744 (839)
+|+.|++++|++ ..+|.. ..++|+.|++++|++..
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp SCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred CCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 888888888888 667765 34688888888888764
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=4.7e-31 Score=303.26 Aligned_cols=104 Identities=23% Similarity=0.235 Sum_probs=77.2
Q ss_pred CcceeeecccccccCcccccc--CCCCCCeEEecCCCCCcccCCCCCCCCCcceEecc------cccccccccccCcccc
Q 036119 636 SLEEISISVLENLKSLPADLH--NLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIY------DCENLKALPNCMHNLT 707 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~------~~~~l~~lp~~l~~l~ 707 (839)
+|+.|++++|++. .+|..+. .+++|++|++++|.+.+ +|..+..+++|++|+++ +|+..+.+|..+..++
T Consensus 489 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 489 LLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp GCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 6777777777766 5666665 77888888888886665 77777777888888884 4556677788888888
Q ss_pred cccccccccccCCccCCCCCCCCCcceEEecCCCCC
Q 036119 708 SLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 708 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 743 (839)
+|++|++++|.+ +.+|.. ..++|++|++++|++.
T Consensus 567 ~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 567 SLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNI 600 (636)
T ss_dssp SCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTC
T ss_pred CCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCc
Confidence 888888888887 566654 3378888888888765
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=294.87 Aligned_cols=432 Identities=15% Similarity=0.130 Sum_probs=282.3
Q ss_pred cccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccc-cccccCcCcCcEeEecCccccccccCCCCCC
Q 036119 263 EHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQE 341 (839)
Q Consensus 263 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~ 341 (839)
++|+.| .++.+.+. ..++..|..+++|++|++++|. +..+ |..|+++++|++|++++|.+. .+|.. .
T Consensus 21 ~~L~~L------~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~- 88 (520)
T 2z7x_B 21 QKTTIL------NISQNYIS-ELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKLV-KISCH--P- 88 (520)
T ss_dssp TTCSEE------ECCSSCCC-CCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--C-
T ss_pred ccccEE------ECCCCccc-ccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCcee-ecCcc--c-
Confidence 677877 44444432 3345679999999999999999 5555 789999999999999999995 57765 4
Q ss_pred ccccCCCccEEeccCcccccc-CCCc---CCCCccEEeecccCcccccCCCCCCc--cEEEeccccceeecCCCccceee
Q 036119 342 VDEVFPKLRTLSLDNCCKLQG-TLPR---RLLLLETLDITSCDQLLVTIQCLPAL--SELQIDGCKRVVFSSPHLVHAVN 415 (839)
Q Consensus 342 ~~~~l~~L~~L~L~~~~~l~~-~lp~---~l~~L~~L~l~~~~~l~~~l~~l~~L--~~L~l~~~~~~~~~~~~~l~~l~ 415 (839)
+++|++|++++| .+++ .+|. .+++|++|+++++.--...++.+++| ++|++++|....
T Consensus 89 ----l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~----------- 152 (520)
T 2z7x_B 89 ----TVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG----------- 152 (520)
T ss_dssp ----CCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTT-----------
T ss_pred ----cCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccc-----------
Confidence 999999999997 5654 4564 67899999999987444667778888 999999886310
Q ss_pred ecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCcccc-ccCCCCCccEE
Q 036119 416 VREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQ-ALLTLSSLTEM 494 (839)
Q Consensus 416 l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L 494 (839)
....+..+..++ .+...+++++|...+.++. .+..+++|+.|
T Consensus 153 ----------~~~~~~~l~~l~---------------------------~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 195 (520)
T 2z7x_B 153 ----------EKEDPEGLQDFN---------------------------TESLHIVFPTNKEFHFILDVSVKTVANLELS 195 (520)
T ss_dssp ----------SSCCTTTTTTCC---------------------------EEEEEEECCSSSCCCCCCCCCCTTCSEEEEC
T ss_pred ----------cccccccccccc---------------------------cceEEEEeccCcchhhhhhhhhhcccceeec
Confidence 001112222221 2344567788877665554 56789999999
Q ss_pred eecCCC-------CCcccCCCCCCCCccEEEeccCccccccchhhh-hCCCCccceEecccCCCCcCCCC-C-----CCC
Q 036119 495 RIHDCA-------SLVSFPQAALPSQLRSVVIEECDALESLPEAWM-QNSNSSLECLAIRSCNSLVSFPE-V-----ALP 560 (839)
Q Consensus 495 ~l~~~~-------~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~-~-----~~~ 560 (839)
++++|. ..+.++....+++|+.|.+.+|........... ....++|+.|++++|.....+|. . ..+
T Consensus 196 ~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l 275 (520)
T 2z7x_B 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275 (520)
T ss_dssp CEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCC
T ss_pred cccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccC
Confidence 999985 334455556789999999998764432221111 01236899999999876656663 2 456
Q ss_pred CCccEEEEcCCCCCcCCchhhhcccC-CCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcce
Q 036119 561 SQLRTIIIGGCHALESLPEAWMHNEL-PATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEE 639 (839)
Q Consensus 561 ~~L~~L~l~~~~~l~~~~~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~ 639 (839)
++|+.++++++.. .+|...+...+ ..+++.|++++|..... +.....++|++
T Consensus 276 ~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-------------------------~~~~~l~~L~~ 328 (520)
T 2z7x_B 276 KALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM-------------------------LCPSKISPFLH 328 (520)
T ss_dssp CEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC-------------------------CCCSSCCCCCE
T ss_pred ceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc-------------------------cchhhCCcccE
Confidence 6777777777654 45422211100 02355555555532111 10013356666
Q ss_pred eeecccccccCccccccCCCCCCeEEecCCCCCc--ccCCCCCCCCCcceEeccccccccccccc-Cccccccccccccc
Q 036119 640 ISISVLENLKSLPADLHNLHHLQKIWIFGCPNLE--SFPEEGLPSTKLTELTIYDCENLKALPNC-MHNLTSLLNLKISE 716 (839)
Q Consensus 640 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~l~~ 716 (839)
|++++|++.+.+|..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|...+.+|.. +..+++|+.|++++
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 7777777766667777778888888888876654 44555666778888888887766656654 67778888888888
Q ss_pred ccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccC
Q 036119 717 CPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSI 796 (839)
Q Consensus 717 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 796 (839)
|.+...+|.. .+++|++|++++|.+.. +|.... .++ +|+.|++++|... .+|..
T Consensus 409 N~l~~~~~~~-l~~~L~~L~Ls~N~l~~-ip~~~~-~l~----------------------~L~~L~L~~N~l~-~l~~~ 462 (520)
T 2z7x_B 409 NILTDTIFRC-LPPRIKVLDLHSNKIKS-IPKQVV-KLE----------------------ALQELNVASNQLK-SVPDG 462 (520)
T ss_dssp SCCCGGGGGS-CCTTCCEEECCSSCCCC-CCGGGG-GCT----------------------TCCEEECCSSCCC-CCCTT
T ss_pred CCCCcchhhh-hcccCCEEECCCCcccc-cchhhh-cCC----------------------CCCEEECCCCcCC-ccCHH
Confidence 8776555542 22678888888887763 333211 233 4556666666443 45544
Q ss_pred -CCCCCccCeeeccCCC
Q 036119 797 -GENLTSLKTLRLSDCP 812 (839)
Q Consensus 797 -~~~l~~L~~L~l~~c~ 812 (839)
+..+++|+.|++++|+
T Consensus 463 ~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhccCCcccEEECcCCC
Confidence 5666677777777664
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.5e-29 Score=287.90 Aligned_cols=429 Identities=16% Similarity=0.124 Sum_probs=222.9
Q ss_pred CceeEEEeCCCccccccc-ccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc-CCCCc
Q 036119 294 PRLRVFSLCGYRNIFNLP-NEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR-RLLLL 371 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~-~l~~L 371 (839)
++|++|++++|. +..+| .+|.++++|++|++++|.+.+..|..+.. +++|++|++++| .++ .+|. .+.+|
T Consensus 52 ~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N-~l~-~lp~~~l~~L 123 (562)
T 3a79_B 52 PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF-----NQDLEYLDVSHN-RLQ-NISCCPMASL 123 (562)
T ss_dssp TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT-----CTTCCEEECTTS-CCC-EECSCCCTTC
T ss_pred CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCC-----CCCCCEEECCCC-cCC-ccCccccccC
Confidence 567777777777 55544 56777777777777777776655665555 777777777775 454 4553 55666
Q ss_pred cEEeecccC--c--ccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCc
Q 036119 372 ETLDITSCD--Q--LLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQL 447 (839)
Q Consensus 372 ~~L~l~~~~--~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l 447 (839)
++|++++|. . .|..++.+++|++|++++|.... ..+
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--------------------------~~~-------------- 163 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--------------------------LDL-------------- 163 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--------------------------TTT--------------
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCCcccc--------------------------Cch--------------
Confidence 666666665 2 23456666666666666653110 000
Q ss_pred ccccccccccCCCCCCcCCceEEEeccCCC--CCccccccCCCCC-ccEEeecCCCCCcccCC--CCCCCCccEEEeccC
Q 036119 448 ISLVTVEEHDQQQPELPCRLQFLELSCCEG--LTRLPQALLTLSS-LTEMRIHDCASLVSFPQ--AALPSQLRSVVIEEC 522 (839)
Q Consensus 448 ~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~--~~~~~~~l~~l~~-L~~L~l~~~~~~~~l~~--~~~~~~L~~L~l~~~ 522 (839)
..++.+ +|+.|++++|.+ ....|.++..+.. .-.+++++|.....++. ...+++|+.+++++|
T Consensus 164 ----------~~l~~L--~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 231 (562)
T 3a79_B 164 ----------LPVAHL--HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231 (562)
T ss_dssp ----------GGGTTS--CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECC
T ss_pred ----------hhhhhc--eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccc
Confidence 001111 348888888777 5666666655441 11345555544433322 123566667776665
Q ss_pred cc----ccccchhhhhCCCCccceEecccCCCCcC----CCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEE
Q 036119 523 DA----LESLPEAWMQNSNSSLECLAIRSCNSLVS----FPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLE 594 (839)
Q Consensus 523 ~~----l~~~~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~ 594 (839)
.. +......+ ...+.|+.+++.++..... ++.....++|++|++++|.....+|...+... ..+++.
T Consensus 232 ~~~~~~l~~~~~~l--~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~-~~~L~~-- 306 (562)
T 3a79_B 232 DENCQRLMTFLSEL--TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS-ETALKS-- 306 (562)
T ss_dssp STTHHHHHHHHHHH--HSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCC-SCSCCE--
T ss_pred ccccchHHHHHHHH--hccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcc-cccchh--
Confidence 31 11111111 2345555555554422110 01011112445555544432223332221110 012222
Q ss_pred EeecCCcccccCCCCcccccceeEeccCCC-c--hhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCC
Q 036119 595 VSYCSNLALLSRNGNLPQSLKYLKIEDCSK-L--ESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPN 671 (839)
Q Consensus 595 l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~-l--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 671 (839)
|+.+++..+.. + ..+...+...+++.|++++|.+.... ....+++|++|++++|..
T Consensus 307 -------------------L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 307 -------------------LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp -------------------EEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCC
T ss_pred -------------------eehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCcc
Confidence 22222222221 0 01111122356777777777654322 114677788888888777
Q ss_pred CcccCCCCCCCCCcceEecccccccc--cccccCcccccccccccccccCCccCCCC--CCCCCcceEEecCCCCCCccc
Q 036119 672 LESFPEEGLPSTKLTELTIYDCENLK--ALPNCMHNLTSLLNLKISECPSVVSFPED--GFPTNLQSLDVHDLKISKPLL 747 (839)
Q Consensus 672 ~~~~~~~~~~~~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~ 747 (839)
.+..|..+..+++|++|++++|+..+ .+|..+..+++|+.|++++|.+...+|.. ..+++|++|++++|.+.+.++
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence 76677777777788888887776543 34456777788888888887776545543 556778888888887765443
Q ss_pred cccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCC--CCCcc
Q 036119 748 EWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQ--GLPKS 825 (839)
Q Consensus 748 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~s 825 (839)
.. + +++|+.|++++|.. +.+|..+..+++|+.|++++| +++.+|.. +-.++
T Consensus 446 ~~----l---------------------~~~L~~L~L~~N~l-~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~ 498 (562)
T 3a79_B 446 RC----L---------------------PPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTS 498 (562)
T ss_dssp SS----C---------------------CTTCSEEECCSSCC-CCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTT
T ss_pred hh----h---------------------cCcCCEEECCCCcC-cccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCC
Confidence 21 1 12455555555522 244444445555555555554 44444442 11234
Q ss_pred cceeeecCCC
Q 036119 826 LLQLHIYACP 835 (839)
Q Consensus 826 L~~L~i~~c~ 835 (839)
|+.|++++||
T Consensus 499 L~~L~l~~N~ 508 (562)
T 3a79_B 499 LQYIWLHDNP 508 (562)
T ss_dssp CCCEECCSCC
T ss_pred CCEEEecCCC
Confidence 5555555544
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2e-28 Score=278.76 Aligned_cols=383 Identities=15% Similarity=0.092 Sum_probs=229.2
Q ss_pred cccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccc-cccccCcCcCcEeEecCccccccccCCCCCC
Q 036119 263 EHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQE 341 (839)
Q Consensus 263 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~ 341 (839)
++++.| .++.|.+. ..++..|..+++|++|++++|. +..+ |..|+++++|++|++++|.+. .+|.. .
T Consensus 52 ~~L~~L------~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~- 119 (562)
T 3a79_B 52 PRTKAL------SLSQNSIS-ELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--P- 119 (562)
T ss_dssp TTCCEE------ECCSSCCC-CCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSCCC-EECSC--C-
T ss_pred CCcCEE------ECCCCCcc-ccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--c-
Confidence 677777 34444332 3345678999999999999999 6665 788999999999999999995 67765 4
Q ss_pred ccccCCCccEEeccCcccccc-CCCc---CCCCccEEeecccCcccccCCCCCCc--cEEEeccccc--eeecCCCccce
Q 036119 342 VDEVFPKLRTLSLDNCCKLQG-TLPR---RLLLLETLDITSCDQLLVTIQCLPAL--SELQIDGCKR--VVFSSPHLVHA 413 (839)
Q Consensus 342 ~~~~l~~L~~L~L~~~~~l~~-~lp~---~l~~L~~L~l~~~~~l~~~l~~l~~L--~~L~l~~~~~--~~~~~~~~l~~ 413 (839)
+++|++|++++| .+.+ .+|. .+++|++|+++++.--...+..+++| ++|++++|.. ...
T Consensus 120 ----l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~-------- 186 (562)
T 3a79_B 120 ----MASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG-------- 186 (562)
T ss_dssp ----CTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSS--------
T ss_pred ----cccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeeccccccccc--------
Confidence 999999999997 5653 3343 67899999999987444456666666 9999998863 110
Q ss_pred eeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCcccc-ccCCCCCcc
Q 036119 414 VNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQ-ALLTLSSLT 492 (839)
Q Consensus 414 l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~ 492 (839)
.+..+..+. ...-.+++++|.+...++. .+..+++|+
T Consensus 187 ---------------~~~~l~~l~---------------------------~~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 224 (562)
T 3a79_B 187 ---------------ETESLQIPN---------------------------TTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224 (562)
T ss_dssp ---------------SCCEEEECC---------------------------EEEEEEEECSSSCCCCCCEEEESSEEEEE
T ss_pred ---------------CcccccccC---------------------------cceEEEEecCccchhhhhhhcccccceEE
Confidence 001111110 1122567888877665554 566899999
Q ss_pred EEeecCCCC-----CcccCCCCCCCCccEEEeccCccccc----cchhhhhCCCCccceEecccCCCCcCCCCC------
Q 036119 493 EMRIHDCAS-----LVSFPQAALPSQLRSVVIEECDALES----LPEAWMQNSNSSLECLAIRSCNSLVSFPEV------ 557 (839)
Q Consensus 493 ~L~l~~~~~-----~~~l~~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~------ 557 (839)
.+++++|.. ...++....+++|+.+.+.++..... ++.. ...++|++|++++|.....+|..
T Consensus 225 ~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~ip~~~~~~~~ 301 (562)
T 3a79_B 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF---FWPRPVEYLNIYNLTITERIDREEFTYSE 301 (562)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH---HTTSSEEEEEEEEEEECSCCCCCCCCCCS
T ss_pred EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh---hhcccccEEEEeccEeeccccchhhhccc
Confidence 999998741 11222234578888898887653221 1221 22358999999999876666642
Q ss_pred CCCCCccEEEEcCCCCCcCCchhhhcccC-CCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCC
Q 036119 558 ALPSQLRTIIIGGCHALESLPEAWMHNEL-PATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTS 636 (839)
Q Consensus 558 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 636 (839)
..++.|+.+++..+.. .+|.......+ ..+++.|++++|....... ...+ ++
T Consensus 302 ~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l-----------------------~~ 354 (562)
T 3a79_B 302 TALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSP-----------------------SS 354 (562)
T ss_dssp CSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSC-----------------------CC
T ss_pred ccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCC-----------------------CC
Confidence 2333444444444432 44432221110 0246666666664321110 0122 44
Q ss_pred cceeeecccccccCccccccCCCCCCeEEecCCCCCc--ccCCCCCCCCCcceEecccccccccccc-cCcccccccccc
Q 036119 637 LEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLE--SFPEEGLPSTKLTELTIYDCENLKALPN-CMHNLTSLLNLK 713 (839)
Q Consensus 637 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~ 713 (839)
|++|++++|.+.+.+|..+..+++|++|++++|.... .+|..+..+++|++|++++|...+.+|. .+..+++|++|+
T Consensus 355 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~ 434 (562)
T 3a79_B 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434 (562)
T ss_dssp CCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEE
T ss_pred ceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEE
Confidence 5555555555555555555566666666666664443 2233445555666666666654443443 245556666666
Q ss_pred cccccCCccCCCCCCCCCcceEEecCCCCC
Q 036119 714 ISECPSVVSFPEDGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 714 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 743 (839)
+++|.+....|.. .+++|++|++++|.+.
T Consensus 435 l~~n~l~~~~~~~-l~~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 435 LSSNMLTGSVFRC-LPPKVKVLDLHNNRIM 463 (562)
T ss_dssp CCSSCCCGGGGSS-CCTTCSEEECCSSCCC
T ss_pred CCCCCCCcchhhh-hcCcCCEEECCCCcCc
Confidence 6666555444332 1146666666666554
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2e-27 Score=276.28 Aligned_cols=496 Identities=16% Similarity=0.066 Sum_probs=263.4
Q ss_pred ceeEEEeCCCccccccc-ccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc----CCC
Q 036119 295 RLRVFSLCGYRNIFNLP-NEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR----RLL 369 (839)
Q Consensus 295 ~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~----~l~ 369 (839)
.+++|+|++|. +..+| .+|.++++|++|+|++|.+.+..|.++.. +++|++|+|++| +++ .+|. .+.
T Consensus 53 ~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~-----L~~L~~L~Ls~N-~l~-~l~~~~f~~L~ 124 (635)
T 4g8a_A 53 STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-----LSHLSTLILTGN-PIQ-SLALGAFSGLS 124 (635)
T ss_dssp TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-----CTTCCEEECTTC-CCC-EECGGGGTTCT
T ss_pred CCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC-----CCCCCEEEccCC-cCC-CCCHHHhcCCC
Confidence 57788888887 66665 46778888888888888775544555555 788888888875 565 4442 466
Q ss_pred CccEEeecccC--ccc-ccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCC
Q 036119 370 LLETLDITSCD--QLL-VTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQ 446 (839)
Q Consensus 370 ~L~~L~l~~~~--~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 446 (839)
+|++|++++|. .++ ..++.+++|++|++++|....+.. ......+++|+.|++.+..-
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~-------------------~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL-------------------PEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC-------------------CGGGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCC-------------------chhhccchhhhhhcccCccc
Confidence 77777777765 333 347777788888877775322110 11223344555555544321
Q ss_pred cccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC--CCCCCCccEEEeccC--
Q 036119 447 LISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ--AALPSQLRSVVIEEC-- 522 (839)
Q Consensus 447 l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~--~~~~~~L~~L~l~~~-- 522 (839)
..+.. .....+..++.....++++.|.+ ..++........+..+.+.++.....+.. ...++.++...+...
T Consensus 186 -~~~~~--~~l~~L~~l~~~~~~~~ls~n~l-~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 261 (635)
T 4g8a_A 186 -QSIYC--TDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 261 (635)
T ss_dssp -CEECG--GGGHHHHTCTTCCCEEECTTCCC-CEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred -ccccc--ccccchhhhhhhhhhhhcccCcc-cccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence 11100 00000111112344566666655 33443344444566666666532221111 112334443333211
Q ss_pred ccccccc---hhhhhCCCCccceEecccCCCCc----CCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEE
Q 036119 523 DALESLP---EAWMQNSNSSLECLAIRSCNSLV----SFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEV 595 (839)
Q Consensus 523 ~~l~~~~---~~~~~~~~~~L~~L~l~~~~~l~----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l 595 (839)
.....+. .... .....+....+..+.... .........+++.+.+.++... .+.... ...+++.|++
T Consensus 262 ~~~~~l~~~~~~~~-~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~----~~~~L~~L~l 335 (635)
T 4g8a_A 262 RNEGNLEKFDKSAL-EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVKDFS----YNFGWQHLEL 335 (635)
T ss_dssp TTSCCCSCCCTTTT-GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECGGGG----SCCCCSEEEE
T ss_pred cccccccccccccc-ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-cccccc----cchhhhhhhc
Confidence 1111110 0000 111222222222211100 0112233345666666555321 121111 1135677777
Q ss_pred eecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeeccccccc--CccccccCCCCCCeEEecCCCCCc
Q 036119 596 SYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLK--SLPADLHNLHHLQKIWIFGCPNLE 673 (839)
Q Consensus 596 ~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~ 673 (839)
.+|....... .....|+.+.+.++.... .......++|+.+++++|.+.. ..+.....+.+|+.+++..+...
T Consensus 336 ~~~~~~~~~~---~~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~- 410 (635)
T 4g8a_A 336 VNCKFGQFPT---LKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI- 410 (635)
T ss_dssp ESCEESSCCC---CBCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-
T ss_pred ccccccCcCc---ccchhhhhcccccccCCC-Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-
Confidence 6664222111 123456666666654322 2222344667777777766532 33444456667777777766443
Q ss_pred ccCCCCCCCCCcceEeccccccccccc-ccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccC
Q 036119 674 SFPEEGLPSTKLTELTIYDCENLKALP-NCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGS 751 (839)
Q Consensus 674 ~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~ 751 (839)
..+..+..+++|+.+++++|+.....+ ..+..+++++.+++++|.+....+.. ..+++|++|++++|.....+....+
T Consensus 411 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~ 490 (635)
T 4g8a_A 411 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 490 (635)
T ss_dssp EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhh
Confidence 344455566777777777665554433 34566677777777777665544433 4566777777777765443333345
Q ss_pred CCccccceEEEecCCCCCcCCC----CCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCC---CCc
Q 036119 752 NRFTSLRRFTIWGGCPDLVSPP----PFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQG---LPK 824 (839)
Q Consensus 752 ~~l~~L~~l~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~---~~~ 824 (839)
..+++|+.|++++|- +..++ ..+++|++|++++|...+..|..+..+++|+.|++++| +++.+++.. +++
T Consensus 491 ~~l~~L~~L~Ls~N~--L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~ 567 (635)
T 4g8a_A 491 TELRNLTFLDLSQCQ--LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPS 567 (635)
T ss_dssp TTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCT
T ss_pred hhccccCEEECCCCc--cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhC
Confidence 666777777776642 22221 13467888888888766656666778888888888887 666666543 356
Q ss_pred ccceeeecCCC
Q 036119 825 SLLQLHIYACP 835 (839)
Q Consensus 825 sL~~L~i~~c~ 835 (839)
+|++|+++++|
T Consensus 568 ~L~~L~L~~Np 578 (635)
T 4g8a_A 568 SLAFLNLTQND 578 (635)
T ss_dssp TCCEEECTTCC
T ss_pred cCCEEEeeCCC
Confidence 78888888776
No 25
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.96 E-value=3.4e-29 Score=281.34 Aligned_cols=206 Identities=15% Similarity=0.245 Sum_probs=159.7
Q ss_pred hhhhcCCC-cEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHHHhC-CCCeEeCCCCCcccccCcC----
Q 036119 2 LKKQLFGK-KFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMG-ADPVYQLKELSDDDCLDFT---- 75 (839)
Q Consensus 2 l~~~l~~k-~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~-~~~~~~~~~l~~~~~~~~~---- 75 (839)
+++.|++| |+||||||||+.++..|... +|||||||||++.|+..++ ....|+|++|+++|||++|
T Consensus 235 l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 306 (549)
T 2a5y_B 235 ICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYG 306 (549)
T ss_dssp HHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTS
T ss_pred HHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHh
Confidence 56788896 99999999998644345432 7999999999999999886 4468999999999999322
Q ss_pred -C---CchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHHHHHhccccccCCCCCcchhc---------hhhhhh-
Q 036119 76 -R---HQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWNLRDSDILPALR---------LKQCFA- 141 (839)
Q Consensus 76 -~---~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~---------~k~~f~- 141 (839)
. .+.+.+++.+|+++|+|+||||+++|+.|+.+ .+ +|...+....+.....++.+.++ +|.||.
T Consensus 307 ~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~ 384 (549)
T 2a5y_B 307 MPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEV 384 (549)
T ss_dssp CCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHT
T ss_pred cCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhc
Confidence 1 25788899999999999999999999999876 43 33344443333323344555554 889999
Q ss_pred ----------hhccCCCCcccChhHHHHHHHHc--CCCcccCCCCCHHHHHHHHHHHHHhccccccccC-CCcceeecHH
Q 036119 142 ----------YSSLFPKDYEFQDEEIILLWTAE--GFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSY-DASRFVMHDL 208 (839)
Q Consensus 142 ----------~~a~f~~~~~~~~~~li~~w~~~--g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~-~~~~~~mHdl 208 (839)
|||+||+++.|+ +++|+|+ ||+.....+..+++.++ ++++|++++|++.... ...+|+|||+
T Consensus 385 Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdl 459 (549)
T 2a5y_B 385 LSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHI 459 (549)
T ss_dssp SCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHH
T ss_pred cchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChH
Confidence 999999999988 8999999 99986544667888888 9999999999998753 3567999999
Q ss_pred HHHHHHHHccCceE
Q 036119 209 INDLARWAAGEICF 222 (839)
Q Consensus 209 v~~la~~i~~~e~~ 222 (839)
||++|++++++++.
T Consensus 460 v~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 460 IHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHHHTTSCTHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=2.6e-27 Score=262.75 Aligned_cols=265 Identities=13% Similarity=0.021 Sum_probs=126.1
Q ss_pred CCceEEEeccCCCCCccccc-cCCCCCccEEeecCCCCCcccCCCC---CCCCccEEEeccCccccccchhhh------h
Q 036119 465 CRLQFLELSCCEGLTRLPQA-LLTLSSLTEMRIHDCASLVSFPQAA---LPSQLRSVVIEECDALESLPEAWM------Q 534 (839)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~l~~~~---~~~~L~~L~l~~~~~l~~~~~~~~------~ 534 (839)
++|+.|++++|.+....|.. +.++++|++|++++|......+... ..++|+.|.+++|......+..+. .
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 208 (455)
T 3v47_A 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208 (455)
T ss_dssp TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT
T ss_pred ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccc
Confidence 47888888888876555654 7788888888888875544333211 125667777766653322111100 0
Q ss_pred CCCCccceEecccCCCCcCCCC----CCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCc
Q 036119 535 NSNSSLECLAIRSCNSLVSFPE----VALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNL 610 (839)
Q Consensus 535 ~~~~~L~~L~l~~~~~l~~~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 610 (839)
..+++|+.|++++|......+. ....++|+.|+++++........ .. .+. ........+..
T Consensus 209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~----~~~--------~~~~~~~~~~~ 273 (455)
T 3v47_A 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG---HT----NFK--------DPDNFTFKGLE 273 (455)
T ss_dssp TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT---CC----SSC--------CCCTTTTGGGT
T ss_pred cccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc---hh----hhc--------cCccccccccc
Confidence 1224555555555543322221 01123445555444432211100 00 000 00000000111
Q ss_pred ccccceeEeccCCCchhhhhhcC-CCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEe
Q 036119 611 PQSLKYLKIEDCSKLESLAERLD-NTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELT 689 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 689 (839)
.++|+.|++++|......+..+. .++|+.|++++|.+.+..|..+..+++|++|++++|...+..|..+..+++|++|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 13455555555544433333322 25555555555555554455555555555555555554443444445555555555
Q ss_pred cccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCC
Q 036119 690 IYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 690 l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 744 (839)
+++|...+..|..+..+++|++|++++|.+....+.. ..+++|++|++++|++.+
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 5555544444555555555555555555554322222 344555555555555543
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=2.6e-27 Score=259.74 Aligned_cols=392 Identities=23% Similarity=0.286 Sum_probs=241.3
Q ss_pred ccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccccccccCcCcC-------------cEeEecCc
Q 036119 262 VEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHL-------------RCLNLSRT 328 (839)
Q Consensus 262 ~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L-------------~~L~L~~~ 328 (839)
.++||.+ .+..+.+ ..+|..++++++|++|++++|.+.+.+|.+++++.+| ++|++++|
T Consensus 10 ~~~L~~L------~l~~n~l--~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 10 NTFLQEP------LRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred cccchhh------hcccCch--hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence 4566766 3444444 3456668999999999999998667899999988875 88999998
Q ss_pred cccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCccEEeecccCcccccCCCC-CCccEEEeccccceeecC
Q 036119 329 KWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLETLDITSCDQLLVTIQCL-PALSELQIDGCKRVVFSS 407 (839)
Q Consensus 329 ~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~~L~l~~~~~l~~~l~~l-~~L~~L~l~~~~~~~~~~ 407 (839)
.+.+ +|.. .++|++|++++| .++ .+|..+.+|++|+++++.- ..+..+ ++|++|++++|....+
T Consensus 82 ~l~~-lp~~--------~~~L~~L~l~~n-~l~-~lp~~~~~L~~L~l~~n~l--~~l~~~~~~L~~L~L~~n~l~~l-- 146 (454)
T 1jl5_A 82 GLSS-LPEL--------PPHLESLVASCN-SLT-ELPELPQSLKSLLVDNNNL--KALSDLPPLLEYLGVSNNQLEKL-- 146 (454)
T ss_dssp CCSC-CCSC--------CTTCSEEECCSS-CCS-SCCCCCTTCCEEECCSSCC--SCCCSCCTTCCEEECCSSCCSSC--
T ss_pred cccc-CCCC--------cCCCCEEEccCC-cCC-ccccccCCCcEEECCCCcc--CcccCCCCCCCEEECcCCCCCCC--
Confidence 8744 4541 568899999885 677 4887778899999888751 112223 6888999888763321
Q ss_pred CCccceeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCC
Q 036119 408 PHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLT 487 (839)
Q Consensus 408 ~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~ 487 (839)
+ ....+++|+.|+++++. + ..+|..+++|+.|++++|.+. .+| .++.
T Consensus 147 ------------------p--~~~~l~~L~~L~l~~N~-l----------~~lp~~~~~L~~L~L~~n~l~-~l~-~~~~ 193 (454)
T 1jl5_A 147 ------------------P--ELQNSSFLKIIDVDNNS-L----------KKLPDLPPSLEFIAAGNNQLE-ELP-ELQN 193 (454)
T ss_dssp ------------------C--CCTTCTTCCEEECCSSC-C----------SCCCCCCTTCCEEECCSSCCS-SCC-CCTT
T ss_pred ------------------c--ccCCCCCCCEEECCCCc-C----------cccCCCcccccEEECcCCcCC-cCc-cccC
Confidence 1 13566778888887653 1 223444468999999999884 466 5899
Q ss_pred CCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEE
Q 036119 488 LSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTII 567 (839)
Q Consensus 488 l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~ 567 (839)
+++|+.|++++|.. ..+|. .+++|+.|++++|. +..+|. + ..+++|+.|++++|... .+|. .+++|+.|+
T Consensus 194 l~~L~~L~l~~N~l-~~l~~--~~~~L~~L~l~~n~-l~~lp~-~--~~l~~L~~L~l~~N~l~-~l~~--~~~~L~~L~ 263 (454)
T 1jl5_A 194 LPFLTAIYADNNSL-KKLPD--LPLSLESIVAGNNI-LEELPE-L--QNLPFLTTIYADNNLLK-TLPD--LPPSLEALN 263 (454)
T ss_dssp CTTCCEEECCSSCC-SSCCC--CCTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEECCSSCCS-SCCS--CCTTCCEEE
T ss_pred CCCCCEEECCCCcC-CcCCC--CcCcccEEECcCCc-CCcccc-c--CCCCCCCEEECCCCcCC-cccc--cccccCEEE
Confidence 99999999999854 34544 34799999999986 446664 3 57789999999987544 4553 357899999
Q ss_pred EcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeeccccc
Q 036119 568 IGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLEN 647 (839)
Q Consensus 568 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~ 647 (839)
+++|. +..+|.. +++|+.|++++|.. +.++ ..+++|+.|++++|.... ++. ..++|+.|++++|++
T Consensus 264 l~~N~-l~~l~~~------~~~L~~L~ls~N~l-~~l~---~~~~~L~~L~l~~N~l~~-i~~--~~~~L~~L~Ls~N~l 329 (454)
T 1jl5_A 264 VRDNY-LTDLPEL------PQSLTFLDVSENIF-SGLS---ELPPNLYYLNASSNEIRS-LCD--LPPSLEELNVSNNKL 329 (454)
T ss_dssp CCSSC-CSCCCCC------CTTCCEEECCSSCC-SEES---CCCTTCCEEECCSSCCSE-ECC--CCTTCCEEECCSSCC
T ss_pred CCCCc-ccccCcc------cCcCCEEECcCCcc-Cccc---CcCCcCCEEECcCCcCCc-ccC--CcCcCCEEECCCCcc
Confidence 99885 4555542 25899999998853 3332 245789999999885432 221 125899999999888
Q ss_pred ccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccc--cccccCccc-------------cccccc
Q 036119 648 LKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLK--ALPNCMHNL-------------TSLLNL 712 (839)
Q Consensus 648 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~lp~~l~~l-------------~~L~~L 712 (839)
.+ +|.. +++|++|++++|... .+|. .+++|++|++++|+..+ .+|.++..+ ++|+.|
T Consensus 330 ~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L 401 (454)
T 1jl5_A 330 IE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQL 401 (454)
T ss_dssp SC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------
T ss_pred cc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEE
Confidence 65 5543 688999999998655 5666 35789999999998777 677777665 455555
Q ss_pred ccccccCCccCCCCCCCCCcceEEecCCCCCC
Q 036119 713 KISECPSVVSFPEDGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 744 (839)
++++|++.. +|. .+++++.|.+++|.+.+
T Consensus 402 ~ls~N~l~~-~~~--iP~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 402 HVETNPLRE-FPD--IPESVEDLRMNSERVVD 430 (454)
T ss_dssp --------------------------------
T ss_pred ECCCCcCCc-ccc--chhhHhheeCcCcccCC
Confidence 555555432 111 23345555555554443
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1e-26 Score=270.25 Aligned_cols=439 Identities=15% Similarity=0.089 Sum_probs=220.5
Q ss_pred HHHHhcCCCceeEEEeCCCccccccc-ccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCC
Q 036119 286 LQMLLNHLPRLRVFSLCGYRNIFNLP-NEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTL 364 (839)
Q Consensus 286 ~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~l 364 (839)
++..|.++++|++|+|++|. +..+| .+|.+|++|++|+|++|++.+..|..+.. +++|++|++++| .++ .+
T Consensus 68 ~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~-----L~~L~~L~Ls~N-~l~-~l 139 (635)
T 4g8a_A 68 GSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-----LSSLQKLVAVET-NLA-SL 139 (635)
T ss_dssp CTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT-----CTTCCEEECTTS-CCC-CS
T ss_pred CHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC-----CCCCCEEECCCC-cCC-CC
Confidence 34567778888888888887 66665 45777888888888888775543344444 778888888875 555 34
Q ss_pred C----cCCCCccEEeecccC----cccccCCCCCCccEEEeccccceeecCCC--cc-------ceeeeccccccccccc
Q 036119 365 P----RRLLLLETLDITSCD----QLLVTIQCLPALSELQIDGCKRVVFSSPH--LV-------HAVNVREQAYFWRSET 427 (839)
Q Consensus 365 p----~~l~~L~~L~l~~~~----~l~~~l~~l~~L~~L~l~~~~~~~~~~~~--~l-------~~l~l~~l~~~~~~~~ 427 (839)
| ..+++|++|+++++. .++..++.+++|++|++++|....+.... .+ ..+++..-. +.....
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~-l~~i~~ 218 (635)
T 4g8a_A 140 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQP 218 (635)
T ss_dssp TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC-CCEECT
T ss_pred ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc-ccccCc
Confidence 4 246677888887765 34566777888888888877654432110 00 001110000 000000
Q ss_pred c------------------------cCCCCCCCCceecc--cCCCcccccccccccCCCCCCcCCceEEEeccCCCC---
Q 036119 428 R------------------------LPQDIRSLNWLQIS--RCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGL--- 478 (839)
Q Consensus 428 ~------------------------~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~--- 478 (839)
. ....+..++...+. .......+.. .....+... ..+....+..+...
T Consensus 219 ~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~--~~~~~~~~~-~~l~~~~l~~~~~~~~~ 295 (635)
T 4g8a_A 219 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK--FDKSALEGL-CNLTIEEFRLAYLDYYL 295 (635)
T ss_dssp TTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC--CCTTTTGGG-GGSEEEEEEEECCCSCE
T ss_pred ccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc--ccccccccc-cchhhhhhhhhhhcccc
Confidence 0 00111111111110 0000000000 000000000 22333333222111
Q ss_pred CccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEecccCCCCcCCCCCC
Q 036119 479 TRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVA 558 (839)
Q Consensus 479 ~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 558 (839)
...+..+..+.+++.+.+.++.. ..++......+|+.|.+.+|......+ ..++.|+.+.+..+... ..+...
T Consensus 296 ~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~-----~~l~~L~~l~l~~n~~~-~~~~~~ 368 (635)
T 4g8a_A 296 DGIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNFGWQHLELVNCKFGQFPT-----LKLKSLKRLTFTSNKGG-NAFSEV 368 (635)
T ss_dssp EECTTTTGGGTTCSEEEEESCEE-EECGGGGSCCCCSEEEEESCEESSCCC-----CBCTTCCEEEEESCCSC-CBCCCC
T ss_pred cchhhhhhhhccccccccccccc-ccccccccchhhhhhhcccccccCcCc-----ccchhhhhcccccccCC-CCcccc
Confidence 12222344455666666666532 222333345667777776664322211 23456666666665433 223334
Q ss_pred CCCCccEEEEcCCCCCc--CCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhh--hcCC
Q 036119 559 LPSQLRTIIIGGCHALE--SLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAE--RLDN 634 (839)
Q Consensus 559 ~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~ 634 (839)
.+++|+.++++++.... ..+...... .+++.+++..+........ ....++|+.+++..+......+. ....
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~---~~L~~L~~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGT---ISLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSC---SCCCEEECCSCSEEEECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred cccccccchhhccccccccccccchhhh---hhhhhhhcccccccccccc-ccccccccchhhhhccccccccccccccc
Confidence 45677777776654321 122222111 3566666655543322222 22334566666665544333321 1223
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCc-ccCCCCCCCCCcceEecccccccccccccCcccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLE-SFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLK 713 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~ 713 (839)
++++.++++.|.+....+..+..+++|+.|++++|.... ..|..+..+++|++|++++|+..+..|..|.++++|++|+
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 566666666666666556556666666666666665433 2445556666666666666655555556666666666666
Q ss_pred cccccCCccCCCC-CCCCCcceEEecCCCCCCccc
Q 036119 714 ISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLL 747 (839)
Q Consensus 714 l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~ 747 (839)
|++|.+....+.. ..+++|++|++++|++.+..+
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 6666655433322 445666666666666665443
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=2.5e-26 Score=254.84 Aligned_cols=360 Identities=15% Similarity=0.094 Sum_probs=235.7
Q ss_pred CceeEEEeCCCcccccc-cccccCcCcCcEeEecCcccccccc-CCCCCCccccCCCccEEeccCccccccCCCc---CC
Q 036119 294 PRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIP-CGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR---RL 368 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p-~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~---~l 368 (839)
++|++|+|++|. +..+ |..|+++++|++|++++|.+.+.+| ..+.. +++|++|++++| .+.+..|. .+
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~-----l~~L~~L~Ls~n-~l~~~~~~~~~~l 102 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG-----LSSLIILKLDYN-QFLQLETGAFNGL 102 (455)
T ss_dssp TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTT-----CTTCCEEECTTC-TTCEECTTTTTTC
T ss_pred CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccc-----cccCCEEeCCCC-ccCccChhhccCc
Confidence 567777777777 4444 6677777778888887777654443 33444 777777777775 44433343 45
Q ss_pred CCccEEeecccCc---cccc--CCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceeccc
Q 036119 369 LLLETLDITSCDQ---LLVT--IQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISR 443 (839)
Q Consensus 369 ~~L~~L~l~~~~~---l~~~--l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~ 443 (839)
.+|++|++++|.- .+.. ++.+++|++|++++|....... ..+...+
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------------~~~~~~l---------- 153 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-------------------ASFFLNM---------- 153 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC-------------------CGGGGGC----------
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc-------------------ccccCCC----------
Confidence 5666677666652 2333 6777777777777765322100 0001111
Q ss_pred CCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCC--CCccEEeecCCCCCcccCC----------CCCC
Q 036119 444 CPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTL--SSLTEMRIHDCASLVSFPQ----------AALP 511 (839)
Q Consensus 444 ~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~l~~----------~~~~ 511 (839)
++|+.|++++|.+....+..+..+ ++|+.|++++|.... ++. ...+
T Consensus 154 ---------------------~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 154 ---------------------RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD-MNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp ---------------------TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT-CSTTCTTHHHHCCTTTT
T ss_pred ---------------------CcccEEeCCCCcccccChhhhhccccccccccccccCcccc-cchhhcccccccccccc
Confidence 467777777777655555555544 567777777764332 221 1234
Q ss_pred CCccEEEeccCccccccchhhhh-CCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCc
Q 036119 512 SQLRSVVIEECDALESLPEAWMQ-NSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATL 590 (839)
Q Consensus 512 ~~L~~L~l~~~~~l~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L 590 (839)
++|+.|++++|......+..+.. ...++|+.|++++|............+ ......+.....++|
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~L 277 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK--------------DPDNFTFKGLEASGV 277 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC--------------CCCTTTTGGGTTSCC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc--------------cCcccccccccccCc
Confidence 77888888888765555544322 224788899988876544322111111 111111111112467
Q ss_pred ceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCC
Q 036119 591 EHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGC 669 (839)
Q Consensus 591 ~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 669 (839)
+.|++++|......+.....+++|+.|++++|......+..+ ..++|+.|++++|.+.+..|..+..+++|++|++++|
T Consensus 278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS
T ss_pred eEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC
Confidence 777777776555544444455789999999987665555444 3489999999999998887888999999999999999
Q ss_pred CCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCC
Q 036119 670 PNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPE 725 (839)
Q Consensus 670 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~ 725 (839)
.+....|..+..+++|++|++++|+..+..+..+..+++|+.|++++|++....|.
T Consensus 358 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 88877788889999999999999976654455678999999999999999876553
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=2.1e-25 Score=244.80 Aligned_cols=100 Identities=20% Similarity=0.174 Sum_probs=70.8
Q ss_pred hcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCC-cCC
Q 036119 290 LNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLP-RRL 368 (839)
Q Consensus 290 ~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp-~~l 368 (839)
+..+++|++|++++|. +..+| +++.+++|++|++++|.+.+ +| ++. +++|++|++++| .+++ +| ..+
T Consensus 38 ~~~l~~L~~L~Ls~n~-l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~-----l~~L~~L~Ls~N-~l~~-~~~~~l 105 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSS-ITDMT-GIEKLTGLTKLICTSNNITT-LD--LSQ-----NTNLTYLACDSN-KLTN-LDVTPL 105 (457)
T ss_dssp HHHHTTCCEEECCSSC-CCCCT-TGGGCTTCSEEECCSSCCSC-CC--CTT-----CTTCSEEECCSS-CCSC-CCCTTC
T ss_pred hhHcCCCCEEEccCCC-cccCh-hhcccCCCCEEEccCCcCCe-Ec--ccc-----CCCCCEEECcCC-CCce-eecCCC
Confidence 4567888999999888 77777 68888999999999998855 33 444 888999999886 5653 33 356
Q ss_pred CCccEEeecccCcccccCCCCCCccEEEecccc
Q 036119 369 LLLETLDITSCDQLLVTIQCLPALSELQIDGCK 401 (839)
Q Consensus 369 ~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~ 401 (839)
++|++|++++|.--...++.+++|++|++++|.
T Consensus 106 ~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNT 138 (457)
T ss_dssp TTCCEEECCSSCCSCCCCTTCTTCCEEECTTSC
T ss_pred CcCCEEECCCCcCCeecCCCCCcCCEEECCCCc
Confidence 667777776665111126667777777776664
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.6e-25 Score=246.61 Aligned_cols=325 Identities=18% Similarity=0.168 Sum_probs=180.4
Q ss_pred CCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCcc
Q 036119 293 LPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLE 372 (839)
Q Consensus 293 l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~ 372 (839)
+.+++.|+++++. +..+|. +..+++|++|++++|.+.+..| +.. +++|++|++++| .+. .+
T Consensus 45 l~~l~~L~l~~~~-i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~-----l~~L~~L~l~~n-~l~-~~-------- 105 (466)
T 1o6v_A 45 LDQVTTLQADRLG-IKSIDG-VEYLNNLTQINFSNNQLTDITP--LKN-----LTKLVDILMNNN-QIA-DI-------- 105 (466)
T ss_dssp HHTCCEEECCSSC-CCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTT-----CTTCCEEECCSS-CCC-CC--------
T ss_pred hccccEEecCCCC-CccCcc-hhhhcCCCEEECCCCccCCchh--hhc-----cccCCEEECCCC-ccc-cC--------
Confidence 4578888898888 778874 7888899999999988855433 444 888888888886 443 11
Q ss_pred EEeecccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccccc
Q 036119 373 TLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVT 452 (839)
Q Consensus 373 ~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 452 (839)
+. ++.+++|++|++++|....++ . +..
T Consensus 106 ----------~~-~~~l~~L~~L~L~~n~l~~~~----------------------------~-----~~~--------- 132 (466)
T 1o6v_A 106 ----------TP-LANLTNLTGLTLFNNQITDID----------------------------P-----LKN--------- 132 (466)
T ss_dssp ----------GG-GTTCTTCCEEECCSSCCCCCG----------------------------G-----GTT---------
T ss_pred ----------hh-hcCCCCCCEEECCCCCCCCCh----------------------------H-----HcC---------
Confidence 12 566677777777666422100 0 000
Q ss_pred cccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhh
Q 036119 453 VEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAW 532 (839)
Q Consensus 453 ~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~ 532 (839)
+ ++|+.|++++|.+ ..++ .+..+++|+.|++.++ ...++....+++|+.|++++|. +..++. +
T Consensus 133 ----------l-~~L~~L~l~~n~l-~~~~-~~~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-l 195 (466)
T 1o6v_A 133 ----------L-TNLNRLELSSNTI-SDIS-ALSGLTSLQQLSFGNQ--VTDLKPLANLTTLERLDISSNK-VSDISV-L 195 (466)
T ss_dssp ----------C-TTCSEEEEEEEEE-CCCG-GGTTCTTCSEEEEEES--CCCCGGGTTCTTCCEEECCSSC-CCCCGG-G
T ss_pred ----------C-CCCCEEECCCCcc-CCCh-hhccCCcccEeecCCc--ccCchhhccCCCCCEEECcCCc-CCCChh-h
Confidence 0 4677777777765 3344 3778888888888642 3333345556777777777765 333322 1
Q ss_pred hhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCccc
Q 036119 533 MQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQ 612 (839)
Q Consensus 533 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 612 (839)
..+++|+.|++++|...... ....+++|+.|++++|. +..+ +. ...++
T Consensus 196 --~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~---------------------------~~-l~~l~ 243 (466)
T 1o6v_A 196 --AKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQ-LKDI---------------------------GT-LASLT 243 (466)
T ss_dssp --GGCTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCSSC-CCCC---------------------------GG-GGGCT
T ss_pred --ccCCCCCEEEecCCcccccc-cccccCCCCEEECCCCC-cccc---------------------------hh-hhcCC
Confidence 34456666666655433221 13334444444444442 1111 11 11124
Q ss_pred ccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccc
Q 036119 613 SLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYD 692 (839)
Q Consensus 613 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 692 (839)
+|+.|++++|..... +.....++|+.|++++|.+.+..+ +..+++|+.|++++|...+..+ +..+++|+.|++++
T Consensus 244 ~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 244 NLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 318 (466)
T ss_dssp TCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCS
T ss_pred CCCEEECCCCccccc-hhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcC
Confidence 566666666543222 223334566666666665544332 4556666666666665443222 44555666666666
Q ss_pred ccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCcc
Q 036119 693 CENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPL 746 (839)
Q Consensus 693 ~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 746 (839)
|+..+..| +..+++|+.|++++|++.. ++....+++|++|++++|++.+..
T Consensus 319 n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 319 NNISDISP--VSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp SCCSCCGG--GGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCBCG
T ss_pred CcCCCchh--hccCccCCEeECCCCccCC-chhhccCCCCCEEeCCCCccCccc
Confidence 65444333 4556666666666665443 233345556666666666555433
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=3.8e-24 Score=234.78 Aligned_cols=355 Identities=14% Similarity=0.101 Sum_probs=205.4
Q ss_pred ccccccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCC
Q 036119 258 SICDVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCG 337 (839)
Q Consensus 258 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~ 337 (839)
.+.++++|++| .+..+.+.. .+ .+..+++|++|++++|. +..+| ++.+++|++|++++|.+.+ +|
T Consensus 37 ~~~~l~~L~~L------~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~l~~-~~-- 101 (457)
T 3bz5_A 37 SEEQLATLTSL------DCHNSSITD--MT-GIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNKLTN-LD-- 101 (457)
T ss_dssp EHHHHTTCCEE------ECCSSCCCC--CT-TGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSC-CC--
T ss_pred ChhHcCCCCEE------EccCCCccc--Ch-hhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCCCce-ee--
Confidence 45567777777 333333321 12 47889999999999999 77786 8899999999999999865 33
Q ss_pred CCCCccccCCCccEEeccCccccccCCC-cCCCCccEEeecccCcccccCCCCCCccEEEeccccceeecCCCccceeee
Q 036119 338 AGQEVDEVFPKLRTLSLDNCCKLQGTLP-RRLLLLETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNV 416 (839)
Q Consensus 338 ~~~~~~~~l~~L~~L~L~~~~~l~~~lp-~~l~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l 416 (839)
++. +++|++|++++| .++ .+| ..+++|++|++++|.--...++.+++|++|++++|.....
T Consensus 102 ~~~-----l~~L~~L~L~~N-~l~-~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~----------- 163 (457)
T 3bz5_A 102 VTP-----LTKLTYLNCDTN-KLT-KLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITK----------- 163 (457)
T ss_dssp CTT-----CTTCCEEECCSS-CCS-CCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCC-----------
T ss_pred cCC-----CCcCCEEECCCC-cCC-eecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccc-----------
Confidence 455 999999999996 676 355 5788999999998872223488899999999988853210
Q ss_pred cccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEee
Q 036119 417 REQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRI 496 (839)
Q Consensus 417 ~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 496 (839)
. -...+ ++|+.|++++|.+. .+| ++.+++|+.|++
T Consensus 164 --------~---~~~~l-------------------------------~~L~~L~ls~n~l~-~l~--l~~l~~L~~L~l 198 (457)
T 3bz5_A 164 --------L---DVTPQ-------------------------------TQLTTLDCSFNKIT-ELD--VSQNKLLNRLNC 198 (457)
T ss_dssp --------C---CCTTC-------------------------------TTCCEEECCSSCCC-CCC--CTTCTTCCEEEC
T ss_pred --------c---ccccC-------------------------------CcCCEEECCCCccc-eec--cccCCCCCEEEC
Confidence 0 01122 35555555555552 233 555566666666
Q ss_pred cCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcC
Q 036119 497 HDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALES 576 (839)
Q Consensus 497 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~ 576 (839)
++|... .+ ....+++|+.|++++|... .+| + ..+++|+.|++++|.... ++ ...+++|+.|+++++
T Consensus 199 ~~N~l~-~~-~l~~l~~L~~L~Ls~N~l~-~ip--~--~~l~~L~~L~l~~N~l~~-~~-~~~l~~L~~L~l~~n----- 264 (457)
T 3bz5_A 199 DTNNIT-KL-DLNQNIQLTFLDCSSNKLT-EID--V--TPLTQLTYFDCSVNPLTE-LD-VSTLSKLTTLHCIQT----- 264 (457)
T ss_dssp CSSCCS-CC-CCTTCTTCSEEECCSSCCS-CCC--C--TTCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECTTC-----
T ss_pred cCCcCC-ee-ccccCCCCCEEECcCCccc-ccC--c--cccCCCCEEEeeCCcCCC-cC-HHHCCCCCEEeccCC-----
Confidence 655322 22 2344556666666655422 233 1 344566666666554322 22 233445555554432
Q ss_pred CchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCcccccc
Q 036119 577 LPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLH 656 (839)
Q Consensus 577 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 656 (839)
+|+.+++++|.....++. + .+++|+.|++++|..++.++. ...+|+.|+++
T Consensus 265 ------------~L~~L~l~~n~~~~~~~~-~-~l~~L~~L~Ls~n~~l~~l~~--~~~~L~~L~l~------------- 315 (457)
T 3bz5_A 265 ------------DLLEIDLTHNTQLIYFQA-E-GCRKIKELDVTHNTQLYLLDC--QAAGITELDLS------------- 315 (457)
T ss_dssp ------------CCSCCCCTTCTTCCEEEC-T-TCTTCCCCCCTTCTTCCEEEC--TTCCCSCCCCT-------------
T ss_pred ------------CCCEEECCCCccCCcccc-c-ccccCCEEECCCCcccceecc--CCCcceEechh-------------
Confidence 344444444444444332 1 224566666666655554442 22334444333
Q ss_pred CCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEE
Q 036119 657 NLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLD 736 (839)
Q Consensus 657 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 736 (839)
++++|++|++++|...+ ++ +..+++|+.|++++|+..+ ++.|..|.+++|.+... ..+.+|+.++
T Consensus 316 ~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~----~~~~~l~~l~ 380 (457)
T 3bz5_A 316 QNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE----GQTITMPKET 380 (457)
T ss_dssp TCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE----EEEEECCCBC
T ss_pred hcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec----ceeeecCccc
Confidence 23556666666665544 22 4556666666666664332 24455555555544332 1334556666
Q ss_pred ecCCCCCCcccc
Q 036119 737 VHDLKISKPLLE 748 (839)
Q Consensus 737 l~~~~~~~~~~~ 748 (839)
+++|+++|.+|.
T Consensus 381 l~~N~l~g~ip~ 392 (457)
T 3bz5_A 381 LTNNSLTIAVSP 392 (457)
T ss_dssp CBTTBEEEECCT
T ss_pred cccCcEEEEcCh
Confidence 666666655544
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.5e-23 Score=232.30 Aligned_cols=347 Identities=19% Similarity=0.131 Sum_probs=253.7
Q ss_pred CCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCC
Q 036119 432 DIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALP 511 (839)
Q Consensus 432 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~ 511 (839)
.+++++.|++.++.- ..+. .+..+ ++|+.|++++|.+ ..++. +..+++|++|++++|... .++....+
T Consensus 44 ~l~~l~~L~l~~~~i-~~l~-------~~~~l-~~L~~L~Ls~n~l-~~~~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l 111 (466)
T 1o6v_A 44 DLDQVTTLQADRLGI-KSID-------GVEYL-NNLTQINFSNNQL-TDITP-LKNLTKLVDILMNNNQIA-DITPLANL 111 (466)
T ss_dssp HHHTCCEEECCSSCC-CCCT-------TGGGC-TTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCC-CCGGGTTC
T ss_pred HhccccEEecCCCCC-ccCc-------chhhh-cCCCEEECCCCcc-CCchh-hhccccCCEEECCCCccc-cChhhcCC
Confidence 356788888876532 1111 11122 6899999999987 45555 899999999999998544 44446778
Q ss_pred CCccEEEeccCccccccchhhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcc
Q 036119 512 SQLRSVVIEECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLE 591 (839)
Q Consensus 512 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~ 591 (839)
++|+.|++++|. +..++. + ..+++|++|++++|.. ..++.+..+++|+.|.++++ +..++. +.. + ++|+
T Consensus 112 ~~L~~L~L~~n~-l~~~~~-~--~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~~--~~~~~~--~~~-l-~~L~ 180 (466)
T 1o6v_A 112 TNLTGLTLFNNQ-ITDIDP-L--KNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFGNQ--VTDLKP--LAN-L-TTLE 180 (466)
T ss_dssp TTCCEEECCSSC-CCCCGG-G--TTCTTCSEEEEEEEEE-CCCGGGTTCTTCSEEEEEES--CCCCGG--GTT-C-TTCC
T ss_pred CCCCEEECCCCC-CCCChH-H--cCCCCCCEEECCCCcc-CCChhhccCCcccEeecCCc--ccCchh--hcc-C-CCCC
Confidence 999999999986 444443 2 6789999999999864 44566777889999999743 333332 221 2 5899
Q ss_pred eEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCC
Q 036119 592 HLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPN 671 (839)
Q Consensus 592 ~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 671 (839)
.|++++|.. ..++. ...+++|+.|++++|......+ ....++|+.|++++|.+.+. ..+..+++|++|++++|..
T Consensus 181 ~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 255 (466)
T 1o6v_A 181 RLDISSNKV-SDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 255 (466)
T ss_dssp EEECCSSCC-CCCGG-GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred EEECcCCcC-CCChh-hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcc
Confidence 999998863 33333 2334689999999986544333 44568999999999987653 3577899999999999977
Q ss_pred CcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccC
Q 036119 672 LESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGS 751 (839)
Q Consensus 672 ~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 751 (839)
....+ +..+++|++|++++|...+ ++. +..+++|+.|++++|.+.. ++....+++|++|++++|++.+..+ .
T Consensus 256 ~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~ 327 (466)
T 1o6v_A 256 SNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDISP---V 327 (466)
T ss_dssp CCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSCCSCCGG---G
T ss_pred ccchh--hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccC-chhhcCCCCCCEEECcCCcCCCchh---h
Confidence 65444 6778899999999987554 444 7889999999999998765 3335678899999999999887654 4
Q ss_pred CCccccceEEEecCCCCCcCCCC--CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCC
Q 036119 752 NRFTSLRRFTIWGGCPDLVSPPP--FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSE 819 (839)
Q Consensus 752 ~~l~~L~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 819 (839)
..+++|+.|++++|. +..++. .+++|+.|++++|+..+..| +..+++|+.|++++| .++.+|.
T Consensus 328 ~~l~~L~~L~l~~n~--l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~~~~~p~ 392 (466)
T 1o6v_A 328 SSLTKLQRLFFYNNK--VSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ-AWTNAPV 392 (466)
T ss_dssp GGCTTCCEEECCSSC--CCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE-EEECCCB
T ss_pred ccCccCCEeECCCCc--cCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC-cccCCch
Confidence 678999999998853 223322 45789999999998776666 778999999999988 5566554
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.5e-23 Score=223.39 Aligned_cols=306 Identities=18% Similarity=0.180 Sum_probs=177.8
Q ss_pred cCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCC
Q 036119 291 NHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLL 370 (839)
Q Consensus 291 ~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~ 370 (839)
..+++|++|+++++. +..+|. +..+++|++|++++|.+.+ +|. +.. +++|++|++++| .++ .+
T Consensus 41 ~~l~~L~~L~l~~~~-i~~~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~-----l~~L~~L~L~~n-~i~-~~------ 103 (347)
T 4fmz_A 41 EELESITKLVVAGEK-VASIQG-IEYLTNLEYLNLNGNQITD-ISP-LSN-----LVKLTNLYIGTN-KIT-DI------ 103 (347)
T ss_dssp HHHTTCSEEECCSSC-CCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTT-----CTTCCEEECCSS-CCC-CC------
T ss_pred hhcccccEEEEeCCc-cccchh-hhhcCCccEEEccCCcccc-chh-hhc-----CCcCCEEEccCC-ccc-Cc------
Confidence 356789999999998 888875 8889999999999998854 333 444 888999988886 444 22
Q ss_pred ccEEeecccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccc
Q 036119 371 LETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISL 450 (839)
Q Consensus 371 L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 450 (839)
..+..+++|++|++++|....++ . +.
T Consensus 104 -------------~~~~~l~~L~~L~l~~n~i~~~~----------------------------~-----~~-------- 129 (347)
T 4fmz_A 104 -------------SALQNLTNLRELYLNEDNISDIS----------------------------P-----LA-------- 129 (347)
T ss_dssp -------------GGGTTCTTCSEEECTTSCCCCCG----------------------------G-----GT--------
T ss_pred -------------hHHcCCCcCCEEECcCCcccCch----------------------------h-----hc--------
Confidence 23566677777777766422100 0 00
Q ss_pred cccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccch
Q 036119 451 VTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPE 530 (839)
Q Consensus 451 ~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~ 530 (839)
.+ ++|+.|++++|.....++. +..+++|+.|++++|.. ..++....+++|+.|++++|.. ..++.
T Consensus 130 -----------~l-~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~L~l~~n~l-~~~~~ 194 (347)
T 4fmz_A 130 -----------NL-TKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKV-KDVTPIANLTDLYSLSLNYNQI-EDISP 194 (347)
T ss_dssp -----------TC-TTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECTTSCC-CCCGG
T ss_pred -----------cC-CceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCc-CCchhhccCCCCCEEEccCCcc-ccccc
Confidence 00 3677777777755444443 67777777777777643 2222233455555555555532 22221
Q ss_pred hhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCc
Q 036119 531 AWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNL 610 (839)
Q Consensus 531 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 610 (839)
+ ..+++|+.+++++|.... ++.+..+
T Consensus 195 -~--~~l~~L~~L~l~~n~l~~-~~~~~~~-------------------------------------------------- 220 (347)
T 4fmz_A 195 -L--ASLTSLHYFTAYVNQITD-ITPVANM-------------------------------------------------- 220 (347)
T ss_dssp -G--GGCTTCCEEECCSSCCCC-CGGGGGC--------------------------------------------------
T ss_pred -c--cCCCccceeecccCCCCC-CchhhcC--------------------------------------------------
Confidence 1 223444444444432211 1111222
Q ss_pred ccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEec
Q 036119 611 PQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTI 690 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 690 (839)
++|+.|++++|.... ++.....++|++|++++|.+.+. ..+..+++|++|++++|...+ ++ .+..+++|+.|++
T Consensus 221 -~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L 294 (347)
T 4fmz_A 221 -TRLNSLKIGNNKITD-LSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFL 294 (347)
T ss_dssp -TTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEEC
T ss_pred -CcCCEEEccCCccCC-CcchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEEC
Confidence 233344443332211 11122234555555555554432 246677788888888775543 33 3556678888888
Q ss_pred ccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCC
Q 036119 691 YDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 691 ~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 743 (839)
++|+..+..|..+..+++|++|++++|++....| ...+++|++|++++|++.
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred cCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 8887666666777778888888888887665444 556777888888887654
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=2e-23 Score=225.97 Aligned_cols=310 Identities=16% Similarity=0.158 Sum_probs=206.2
Q ss_pred CCCceeEEEeCCCccccccccc-ccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCC
Q 036119 292 HLPRLRVFSLCGYRNIFNLPNE-IGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLL 370 (839)
Q Consensus 292 ~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~ 370 (839)
.+.++++|+++++. ++.+|.. +..+++|++|++++|.+.+..|..+.. +++|++|++++| .+.+ +|
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~L~~n-~l~~-~~----- 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY-----AHTIQKLYMGFN-AIRY-LP----- 109 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT-----CTTCCEEECCSS-CCCC-CC-----
T ss_pred ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccC-----CCCcCEEECCCC-CCCc-CC-----
Confidence 35788999999988 8888865 578899999999999886655556666 889999999886 4542 22
Q ss_pred ccEEeecccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccc
Q 036119 371 LETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISL 450 (839)
Q Consensus 371 L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 450 (839)
+..++.+++|++|++++|....++. .
T Consensus 110 ------------~~~~~~l~~L~~L~L~~n~l~~l~~------------------------~------------------ 135 (390)
T 3o6n_A 110 ------------PHVFQNVPLLTVLVLERNDLSSLPR------------------------G------------------ 135 (390)
T ss_dssp ------------TTTTTTCTTCCEEECCSSCCCCCCT------------------------T------------------
T ss_pred ------------HHHhcCCCCCCEEECCCCccCcCCH------------------------H------------------
Confidence 2345666777777777664221100 0
Q ss_pred cccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccch
Q 036119 451 VTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPE 530 (839)
Q Consensus 451 ~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~ 530 (839)
.+..+ ++|+.|++++|.+....+..++.+++|+.|++++|... .++ ...+++|+.|.+++|.. ..+
T Consensus 136 --------~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~~~l~~L~~L~l~~n~l-~~~-- 201 (390)
T 3o6n_A 136 --------IFHNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD-LSLIPSLFHANVSYNLL-STL-- 201 (390)
T ss_dssp --------TTTTC-TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC-GGGCTTCSEEECCSSCC-SEE--
T ss_pred --------HhcCC-CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc-cccccccceeecccccc-ccc--
Confidence 00111 46777788777775555666778888888888877432 221 22344455555444421 111
Q ss_pred hhhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCc
Q 036119 531 AWMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNL 610 (839)
Q Consensus 531 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 610 (839)
..+++|+.|+++++. +..++ ...
T Consensus 202 ---------------------------~~~~~L~~L~l~~n~-l~~~~-----------------------------~~~ 224 (390)
T 3o6n_A 202 ---------------------------AIPIAVEELDASHNS-INVVR-----------------------------GPV 224 (390)
T ss_dssp ---------------------------ECCSSCSEEECCSSC-CCEEE-----------------------------CCC
T ss_pred ---------------------------CCCCcceEEECCCCe-eeecc-----------------------------ccc
Confidence 122244444444442 11111 111
Q ss_pred ccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEec
Q 036119 611 PQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTI 690 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 690 (839)
+++|+.|++++|.... .+.....++|+.|++++|.+.+..|..+..+++|++|++++|... .+|.....+++|++|++
T Consensus 225 ~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 225 NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302 (390)
T ss_dssp CSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEEC
T ss_pred cccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEEC
Confidence 2456666666654322 233334578888888888888777888899999999999999665 46666677899999999
Q ss_pred ccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCC
Q 036119 691 YDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 691 ~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 744 (839)
++|+ +..+|..+..+++|+.|++++|++.. ++ ...+++|+.|++++|++..
T Consensus 303 ~~n~-l~~~~~~~~~l~~L~~L~L~~N~i~~-~~-~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 303 SHNH-LLHVERNQPQFDRLENLYLDHNSIVT-LK-LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CSSC-CCCCGGGHHHHTTCSEEECCSSCCCC-CC-CCTTCCCSEEECCSSCEEH
T ss_pred CCCc-ceecCccccccCcCCEEECCCCccce-eC-chhhccCCEEEcCCCCccc
Confidence 9996 45688888899999999999999864 33 4578899999999998874
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=9.9e-23 Score=227.05 Aligned_cols=318 Identities=17% Similarity=0.121 Sum_probs=170.1
Q ss_pred eEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCccEEee
Q 036119 297 RVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLETLDI 376 (839)
Q Consensus 297 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~~L~l 376 (839)
+.++.+++. +..+|..+. .+|++|++++|.+.+..|..+.. +++|++|++++| .+.+..
T Consensus 14 ~~v~c~~~~-l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n-~i~~~~------------ 72 (477)
T 2id5_A 14 RAVLCHRKR-FVAVPEGIP--TETRLLDLGKNRIKTLNQDEFAS-----FPHLEELELNEN-IVSAVE------------ 72 (477)
T ss_dssp TEEECCSCC-CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTT-----CTTCCEEECTTS-CCCEEC------------
T ss_pred CEEEeCCCC-cCcCCCCCC--CCCcEEECCCCccceECHhHccC-----CCCCCEEECCCC-ccCEeC------------
Confidence 456666666 677776553 57778888888776655666655 777777777775 444211
Q ss_pred cccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccccccccc
Q 036119 377 TSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEH 456 (839)
Q Consensus 377 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 456 (839)
+..++.+++|++|++++|....++.
T Consensus 73 ------~~~~~~l~~L~~L~L~~n~l~~~~~------------------------------------------------- 97 (477)
T 2id5_A 73 ------PGAFNNLFNLRTLGLRSNRLKLIPL------------------------------------------------- 97 (477)
T ss_dssp ------TTTTTTCTTCCEEECCSSCCCSCCT-------------------------------------------------
T ss_pred ------hhhhhCCccCCEEECCCCcCCccCc-------------------------------------------------
Confidence 2345566667777776654221100
Q ss_pred cCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccC-CCCCCCCccEEEeccCccccccchhhhhC
Q 036119 457 DQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFP-QAALPSQLRSVVIEECDALESLPEAWMQN 535 (839)
Q Consensus 457 ~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 535 (839)
..+..+ ++|+.|++++|.+....+..+..+++|+.|++++|......+ ....+++|+.|++++|.. ..++.... .
T Consensus 98 -~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l-~ 173 (477)
T 2id5_A 98 -GVFTGL-SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEAL-S 173 (477)
T ss_dssp -TSSTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC-SSCCHHHH-T
T ss_pred -ccccCC-CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC-cccChhHh-c
Confidence 000111 477888888888766667778889999999998875443322 233467777777777643 33332211 3
Q ss_pred CCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccc
Q 036119 536 SNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLK 615 (839)
Q Consensus 536 ~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~ 615 (839)
.+++|+.|++++|... .++...+... ++|+.|++++|..+..++.......+|+
T Consensus 174 ~l~~L~~L~l~~n~i~------------------------~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 227 (477)
T 2id5_A 174 HLHGLIVLRLRHLNIN------------------------AIRDYSFKRL--YRLKVLEISHWPYLDTMTPNCLYGLNLT 227 (477)
T ss_dssp TCTTCCEEEEESCCCC------------------------EECTTCSCSC--TTCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred ccCCCcEEeCCCCcCc------------------------EeChhhcccC--cccceeeCCCCccccccCcccccCcccc
Confidence 3455555555554221 1111111111 3566666666655554443222223455
Q ss_pred eeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccc
Q 036119 616 YLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCEN 695 (839)
Q Consensus 616 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 695 (839)
.|++++ |.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|..
T Consensus 228 ~L~l~~-----------------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 228 SLSITH-----------------------CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp EEEEES-----------------------SCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred EEECcC-----------------------CcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc
Confidence 555544 444332223444555555555555554433334444555555555555554
Q ss_pred cccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCC
Q 036119 696 LKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 696 l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~ 743 (839)
.+..|..+..+++|+.|++++|.+....+.. ..+++|++|++++|++.
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 4444555555555555555555544322211 33455555555555544
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3.5e-23 Score=236.55 Aligned_cols=309 Identities=16% Similarity=0.151 Sum_probs=211.0
Q ss_pred CCceeEEEeCCCccccccccc-ccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCc
Q 036119 293 LPRLRVFSLCGYRNIFNLPNE-IGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLL 371 (839)
Q Consensus 293 l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L 371 (839)
+.++++|++++|. ++.+|.. +.++++|++|++++|.+.+..|..+.. +++|++|++++| .+.+ +|
T Consensus 50 l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~~-~~------ 115 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY-----AHTIQKLYMGFN-AIRY-LP------ 115 (597)
T ss_dssp GCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT-----CTTCCEEECCSS-CCCC-CC------
T ss_pred CCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC-----CCCCCEEECCCC-cCCC-CC------
Confidence 5788999999998 8888865 678899999999999987766667776 999999999986 5553 22
Q ss_pred cEEeecccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCccccc
Q 036119 372 ETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLV 451 (839)
Q Consensus 372 ~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 451 (839)
+..++.+++|++|++++|....++. .
T Consensus 116 -----------~~~~~~l~~L~~L~L~~n~l~~l~~------------------------~------------------- 141 (597)
T 3oja_B 116 -----------PHVFQNVPLLTVLVLERNDLSSLPR------------------------G------------------- 141 (597)
T ss_dssp -----------TTTTTTCTTCCEEECCSSCCCCCCT------------------------T-------------------
T ss_pred -----------HHHHcCCCCCCEEEeeCCCCCCCCH------------------------H-------------------
Confidence 2345667777777777765221100 0
Q ss_pred ccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchh
Q 036119 452 TVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEA 531 (839)
Q Consensus 452 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~ 531 (839)
.+..+ ++|+.|++++|.+....|..++.+++|+.|++++|... .++ ...+++|+.|++++|.. ..
T Consensus 142 -------~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~-~~~l~~L~~L~l~~n~l-~~---- 206 (597)
T 3oja_B 142 -------IFHNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD-LSLIPSLFHANVSYNLL-ST---- 206 (597)
T ss_dssp -------TTTTC-TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC-GGGCTTCSEEECCSSCC-SE----
T ss_pred -------HhccC-CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC-hhhhhhhhhhhcccCcc-cc----
Confidence 00111 47778888888776666667788888888888887432 222 22344444444444321 11
Q ss_pred hhhCCCCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcc
Q 036119 532 WMQNSNSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLP 611 (839)
Q Consensus 532 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 611 (839)
+..+++|+.|++++|. +..++ +..+
T Consensus 207 -------------------------l~~~~~L~~L~ls~n~-l~~~~-----------------------------~~~~ 231 (597)
T 3oja_B 207 -------------------------LAIPIAVEELDASHNS-INVVR-----------------------------GPVN 231 (597)
T ss_dssp -------------------------EECCTTCSEEECCSSC-CCEEE-----------------------------CSCC
T ss_pred -------------------------ccCCchhheeeccCCc-ccccc-----------------------------cccC
Confidence 1122344444444442 11111 1122
Q ss_pred cccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecc
Q 036119 612 QSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIY 691 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 691 (839)
++|+.|++++|.... .+.....++|+.|++++|.+.+..|..+..+++|+.|++++|... .+|..+..+++|+.|+++
T Consensus 232 ~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 232 VELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp SCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECC
T ss_pred CCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECC
Confidence 456666666654332 233344578888889888888888889999999999999999765 467777778999999999
Q ss_pred cccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCC
Q 036119 692 DCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 692 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 744 (839)
+|... .+|..+..+++|+.|++++|++... + ...+++|+.|++++|++.+
T Consensus 310 ~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 310 HNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEH
T ss_pred CCCCC-ccCcccccCCCCCEEECCCCCCCCc-C-hhhcCCCCEEEeeCCCCCC
Confidence 99654 6888889999999999999998643 3 4567899999999999874
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=4.2e-23 Score=219.82 Aligned_cols=301 Identities=17% Similarity=0.128 Sum_probs=191.1
Q ss_pred CCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEe
Q 036119 465 CRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLA 544 (839)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 544 (839)
++|+.|+++++.+ ..++. +..+++|++|++++|. +..++....+++|++|++++|. +..++. + ..+++|++|+
T Consensus 44 ~~L~~L~l~~~~i-~~~~~-~~~~~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~L~~n~-i~~~~~-~--~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKV-ASIQG-IEYLTNLEYLNLNGNQ-ITDISPLSNLVKLTNLYIGTNK-ITDISA-L--QNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCC-CCCTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGG-G--TTCTTCSEEE
T ss_pred ccccEEEEeCCcc-ccchh-hhhcCCccEEEccCCc-cccchhhhcCCcCCEEEccCCc-ccCchH-H--cCCCcCCEEE
Confidence 5788888888776 44543 7778888888888873 3444445567777777777764 333432 1 4556666666
Q ss_pred cccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCC
Q 036119 545 IRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSK 624 (839)
Q Consensus 545 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~ 624 (839)
+++|... .++.+..+++|+.|++++|.....+ +. ...+++|+.|++++|..
T Consensus 117 l~~n~i~-~~~~~~~l~~L~~L~l~~n~~~~~~---------------------------~~-~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 117 LNEDNIS-DISPLANLTKMYSLNLGANHNLSDL---------------------------SP-LSNMTGLNYLTVTESKV 167 (347)
T ss_dssp CTTSCCC-CCGGGTTCTTCCEEECTTCTTCCCC---------------------------GG-GTTCTTCCEEECCSSCC
T ss_pred CcCCccc-CchhhccCCceeEEECCCCCCcccc---------------------------cc-hhhCCCCcEEEecCCCc
Confidence 6665432 2333444455555555555433322 22 11235677777777653
Q ss_pred chhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCc
Q 036119 625 LESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMH 704 (839)
Q Consensus 625 l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~ 704 (839)
. .++.....++|+.|++++|.+.+..+ +..+++|+.|++++|......+ +..+++|++|++++|.... ++. +.
T Consensus 168 ~-~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~ 240 (347)
T 4fmz_A 168 K-DVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LA 240 (347)
T ss_dssp C-CCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GT
T ss_pred C-CchhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hh
Confidence 3 22333445777788887777654332 5677778888887776554333 5566777888887775433 443 67
Q ss_pred ccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeee
Q 036119 705 NLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWI 784 (839)
Q Consensus 705 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l 784 (839)
.+++|++|++++|.+.. ++....+++|++|++++|.+.+. +. +. .+++|+.|++
T Consensus 241 ~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~-~~--~~----------------------~l~~L~~L~L 294 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQISDI-SV--LN----------------------NLSQLNSLFL 294 (347)
T ss_dssp TCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCC-GG--GG----------------------GCTTCSEEEC
T ss_pred cCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCccCCC-hh--hc----------------------CCCCCCEEEC
Confidence 77777777777776643 34445667777777777766542 11 11 1347888888
Q ss_pred cCCCCCCccccCCCCCCccCeeeccCCCCccccCCCCCCcccceeeecCCC
Q 036119 785 SDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYACP 835 (839)
Q Consensus 785 ~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~ 835 (839)
++|...+..+..+..+++|+.|++++| .++.+++.+-.++|++|++++|+
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECCSS-SCCCCGGGGGCTTCSEESSSCC-
T ss_pred cCCcCCCcChhHhhccccCCEEEccCC-ccccccChhhhhccceeehhhhc
Confidence 889877777777788999999999998 46666554444689999999986
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.5e-22 Score=225.47 Aligned_cols=295 Identities=20% Similarity=0.192 Sum_probs=182.5
Q ss_pred CceeEEEeCCCcccccc-cccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCcc
Q 036119 294 PRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLE 372 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~ 372 (839)
+++++|+|++|. +..+ |..|.++++|++|+|++|.+.+..|..+.. +++|++|++++| .++ .+|.
T Consensus 32 ~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~L~~n-~l~-~~~~------ 97 (477)
T 2id5_A 32 TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-----LFNLRTLGLRSN-RLK-LIPL------ 97 (477)
T ss_dssp TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-----CTTCCEEECCSS-CCC-SCCT------
T ss_pred CCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhC-----CccCCEEECCCC-cCC-ccCc------
Confidence 579999999999 6665 578999999999999999998877888877 999999999996 555 3442
Q ss_pred EEeecccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccccc
Q 036119 373 TLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVT 452 (839)
Q Consensus 373 ~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 452 (839)
..+..+++|++|++++|....+.. ..
T Consensus 98 -----------~~~~~l~~L~~L~Ls~n~i~~~~~-----------------------~~-------------------- 123 (477)
T 2id5_A 98 -----------GVFTGLSNLTKLDISENKIVILLD-----------------------YM-------------------- 123 (477)
T ss_dssp -----------TSSTTCTTCCEEECTTSCCCEECT-----------------------TT--------------------
T ss_pred -----------ccccCCCCCCEEECCCCccccCCh-----------------------hH--------------------
Confidence 235677888888888876432110 00
Q ss_pred cccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC--CCCCCCccEEEeccCccccccch
Q 036119 453 VEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ--AALPSQLRSVVIEECDALESLPE 530 (839)
Q Consensus 453 ~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~ 530 (839)
+..+ ++|+.|++++|.+....+..+..+++|+.|++++|. ++.++. ...+++|+.|++.+|......+.
T Consensus 124 -------~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 194 (477)
T 2id5_A 124 -------FQDL-YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194 (477)
T ss_dssp -------TTTC-TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTT
T ss_pred -------cccc-ccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChh
Confidence 1111 478899999998866667789999999999999984 444443 45689999999999875443332
Q ss_pred hhhhCCCCccceEecccCCCCcCCCCC-CCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCC
Q 036119 531 AWMQNSNSSLECLAIRSCNSLVSFPEV-ALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGN 609 (839)
Q Consensus 531 ~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 609 (839)
.+ ..+++|+.|++++|+....++.. ....+|+.|++++|. +..++...+.
T Consensus 195 ~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~-------------------------- 245 (477)
T 2id5_A 195 SF--KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVR-------------------------- 245 (477)
T ss_dssp CS--CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHT--------------------------
T ss_pred hc--ccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhc--------------------------
Confidence 22 45677777777777666555422 222355555555552 3333322111
Q ss_pred cccccceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceE
Q 036119 610 LPQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTEL 688 (839)
Q Consensus 610 ~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 688 (839)
.+++|+.|++++|......+..+ ..++|+.|++++|++.+..|..+..+++|+.|++++|.+....+..+..+++|++|
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence 12456666666554322222111 12445555555554444444444445555555555544333222233344445555
Q ss_pred eccccc
Q 036119 689 TIYDCE 694 (839)
Q Consensus 689 ~l~~~~ 694 (839)
++++|+
T Consensus 326 ~l~~N~ 331 (477)
T 2id5_A 326 ILDSNP 331 (477)
T ss_dssp ECCSSC
T ss_pred EccCCC
Confidence 554444
No 40
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.86 E-value=3.9e-23 Score=233.57 Aligned_cols=176 Identities=19% Similarity=0.250 Sum_probs=138.1
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHHHhCCCCeEeCC------CCCcccccCcCCCc--
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPVYQLK------ELSDDDCLDFTRHQ-- 78 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~~~~~~~~------~l~~~~~~~~~~~~-- 78 (839)
.+||+||||||||+. ++|+.+ ++|||||||||++.++..++....|+|+ +|+++|||+++...
T Consensus 242 ~~KRvLLVLDDVwd~--eqLe~f-------~pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g 312 (1221)
T 1vt4_I 242 PYENCLLVLLNVQNA--KAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312 (1221)
T ss_dssp TTSSCEEEEESCCCH--HHHHHH-------HSSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHC
T ss_pred cCCCEEEEEeCcChH--HHHHhh-------CCCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcC
Confidence 689999999999984 677764 2799999999999999766544567777 99999999654321
Q ss_pred -hHHHHHHHHHHHhCCChHHHHHHHHHhcCCC-ChhHHHHHHhccccccCCCCCcchhc---------h-hhhhhhhccC
Q 036119 79 -SLKEVGEQIVIKCGGLPLAAKTLGGLLRGRD-DPRDWEFVLKTDIWNLRDSDILPALR---------L-KQCFAYSSLF 146 (839)
Q Consensus 79 -~~~~~~~~i~~~c~glPlal~~~g~~L~~~~-~~~~w~~~~~~~~~~~~~~~~~~~l~---------~-k~~f~~~a~f 146 (839)
...+++.++ |+|+||||+++|+.|+++. +.++|+..- ...+...++ . |.||++||+|
T Consensus 313 ~~~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~~--------~~~I~aaLelSYd~Lp~eelK~cFL~LAIF 381 (1221)
T 1vt4_I 313 CRPQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVN--------CDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381 (1221)
T ss_dssp CCTTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHCS--------CHHHHHHHHHHHHHSCTTHHHHHHHHTTSS
T ss_pred CCHHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcCC--------hhHHHHHHHHHHHhCCHHHHHHHHHHHhCC
Confidence 133444444 9999999999999999885 678887531 112222222 5 9999999999
Q ss_pred CCCcccChhHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHhccccccccCCCcceeecHHHHHHHH
Q 036119 147 PKDYEFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVMHDLINDLAR 214 (839)
Q Consensus 147 ~~~~~~~~~~li~~w~~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~mHdlv~~la~ 214 (839)
|+++.|+.+.++.+|+++| ++.++.++++|+++||++... ....|+|||++++++.
T Consensus 382 Ped~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 382 PPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELKV 437 (1221)
T ss_dssp CTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHhc
Confidence 9999999999999998876 145788999999999999853 4678999999999764
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=7.5e-21 Score=205.70 Aligned_cols=302 Identities=15% Similarity=0.070 Sum_probs=161.9
Q ss_pred CCceEEEeccCCCCCcccc-ccCCCCCccEEeecCCCCCcccC-CCCCCCCccEEEeccCccccccchhhhhCCCCccce
Q 036119 465 CRLQFLELSCCEGLTRLPQ-ALLTLSSLTEMRIHDCASLVSFP-QAALPSQLRSVVIEECDALESLPEAWMQNSNSSLEC 542 (839)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 542 (839)
++++.|+++++.+ +.+|. .+..+++|+.|++++|......+ ....+++|++|++++|......+..+ ..+++|+.
T Consensus 45 ~~l~~l~l~~~~l-~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~ 121 (390)
T 3o6n_A 45 NNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLTV 121 (390)
T ss_dssp CCCSEEEEESCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCE
T ss_pred CCceEEEecCCch-hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh--cCCCCCCE
Confidence 3566666666554 33443 24556666666666654322221 23345666666666665332222222 34566666
Q ss_pred EecccCCCCcCCCC--CCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEec
Q 036119 543 LAIRSCNSLVSFPE--VALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIE 620 (839)
Q Consensus 543 L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~ 620 (839)
|++++|... .+|. +..+++|++|++++|. +..++...+... ++|+.|++++|.... ++ ...+++|+.|+++
T Consensus 122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L~~L~l~~n~l~~-~~--~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQAT--TSLQNLQLSSNRLTH-VD--LSLIPSLFHANVS 194 (390)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSC--TTCCEEECCSSCCSB-CC--GGGCTTCSEEECC
T ss_pred EECCCCccC-cCCHHHhcCCCCCcEEECCCCc-cCccChhhccCC--CCCCEEECCCCcCCc-cc--cccccccceeecc
Confidence 666665433 3332 2445566666666653 233322222211 345555555553221 11 1223456666666
Q ss_pred cCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccccc
Q 036119 621 DCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALP 700 (839)
Q Consensus 621 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp 700 (839)
+|.... + ...++|+.|++++|.+... |. ..+++|+.|++++|..... ..+..+++|++|++++|...+..|
T Consensus 195 ~n~l~~-~---~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 195 YNLLST-L---AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp SSCCSE-E---ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred cccccc-c---CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence 553211 1 1124566666666665432 22 1346677777777755432 245556677777777776665556
Q ss_pred ccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccc
Q 036119 701 NCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLT 780 (839)
Q Consensus 701 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~ 780 (839)
..+..+++|++|++++|.+....+....+++|++|++++|++.+..+.. .. +++|+
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~----------------------l~~L~ 321 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ--PQ----------------------FDRLE 321 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH--HH----------------------HTTCS
T ss_pred hHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccc--cc----------------------cCcCC
Confidence 6677777777777777766543222345667777777777665322111 11 23577
Q ss_pred eeeecCCCCCCccccCCCCCCccCeeeccCCC
Q 036119 781 NLWISDMPDLESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 781 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
.|++++|+... ++ +..+++|+.|++++|+
T Consensus 322 ~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 322 NLYLDHNSIVT-LK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp EEECCSSCCCC-CC--CCTTCCCSEEECCSSC
T ss_pred EEECCCCccce-eC--chhhccCCEEEcCCCC
Confidence 77777776533 33 5667888888888874
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.8e-20 Score=214.13 Aligned_cols=302 Identities=15% Similarity=0.061 Sum_probs=183.4
Q ss_pred CCceEEEeccCCCCCcccc-ccCCCCCccEEeecCCCCCcccC-CCCCCCCccEEEeccCccccccchhhhhCCCCccce
Q 036119 465 CRLQFLELSCCEGLTRLPQ-ALLTLSSLTEMRIHDCASLVSFP-QAALPSQLRSVVIEECDALESLPEAWMQNSNSSLEC 542 (839)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 542 (839)
++++.+++++|.+ ..+|. .+..+++|+.|++++|......+ ....+++|+.|++++|......+..+ ..+++|+.
T Consensus 51 ~~l~~l~l~~~~l-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~ 127 (597)
T 3oja_B 51 NNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLTV 127 (597)
T ss_dssp CCCSEEEESSCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCE
T ss_pred CCceEEEeeCCCC-CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH--cCCCCCCE
Confidence 4788888888877 44544 46788899999998885443333 34568889999998887444333333 56788999
Q ss_pred EecccCCCCcCCCC--CCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEec
Q 036119 543 LAIRSCNSLVSFPE--VALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIE 620 (839)
Q Consensus 543 L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~ 620 (839)
|++++|... .+|. +..+++|+.|++++|.. ..++...+... ++|+.|++++|.... ++ ...+++|+.|+++
T Consensus 128 L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l--~~L~~L~L~~N~l~~-~~--~~~l~~L~~L~l~ 200 (597)
T 3oja_B 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQAT--TSLQNLQLSSNRLTH-VD--LSLIPSLFHANVS 200 (597)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTC--TTCCEEECTTSCCSB-CC--GGGCTTCSEEECC
T ss_pred EEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcC-CCCChhhhhcC--CcCcEEECcCCCCCC-cC--hhhhhhhhhhhcc
Confidence 999888554 4443 36678888888888853 44433322221 467777777764322 22 2233567777776
Q ss_pred cCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccccc
Q 036119 621 DCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALP 700 (839)
Q Consensus 621 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp 700 (839)
+|.... + ....+|+.|++++|.+....+ . ..++|+.|++++|...+ +..+..+++|+.|++++|...+..|
T Consensus 201 ~n~l~~-l---~~~~~L~~L~ls~n~l~~~~~-~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 201 YNLLST-L---AIPIAVEELDASHNSINVVRG-P--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp SSCCSE-E---ECCTTCSEEECCSSCCCEEEC-S--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES
T ss_pred cCcccc-c---cCCchhheeeccCCccccccc-c--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH
Confidence 663221 1 122466667776666543221 1 23566677777665543 2345556667777777666666556
Q ss_pred ccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccc
Q 036119 701 NCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLT 780 (839)
Q Consensus 701 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~ 780 (839)
..+..+++|+.|++++|.+....+....+++|++|++++|.+.+. |.. ... +++|+
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i-~~~-~~~----------------------l~~L~ 327 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV-ERN-QPQ----------------------FDRLE 327 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCC-GGG-HHH----------------------HTTCS
T ss_pred HHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCcc-Ccc-ccc----------------------CCCCC
Confidence 666666677777777666654322224456666666666666532 211 011 23677
Q ss_pred eeeecCCCCCCccccCCCCCCccCeeeccCCC
Q 036119 781 NLWISDMPDLESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 781 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
.|++++|.... ++ +..+++|+.|++++|+
T Consensus 328 ~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 328 NLYLDHNSIVT-LK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp EEECCSSCCCC-CC--CCTTCCCSEEECCSSC
T ss_pred EEECCCCCCCC-cC--hhhcCCCCEEEeeCCC
Confidence 77777776543 22 4667888888888875
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=2.2e-21 Score=202.27 Aligned_cols=249 Identities=16% Similarity=0.146 Sum_probs=192.4
Q ss_pred CCceEEEeccCCCCC--ccccccCCCCCccEEeecC-CCCCcccCC-CCCCCCccEEEeccCccccccchhhhhCCCCcc
Q 036119 465 CRLQFLELSCCEGLT--RLPQALLTLSSLTEMRIHD-CASLVSFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNSSL 540 (839)
Q Consensus 465 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 540 (839)
.+++.|++++|.+.+ .+|..++.+++|++|++++ |...+.+|. ...+++|++|++++|.....+|..+ ..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--hCCCCC
Confidence 479999999999977 7899999999999999995 555545554 4468899999999987666677655 456888
Q ss_pred ceEecccCCCCcCCC-CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEe
Q 036119 541 ECLAIRSCNSLVSFP-EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKI 619 (839)
Q Consensus 541 ~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l 619 (839)
++|++++|.....+| .+..+++|++|++++|.....+|..+. ..+++|+.|++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--------------------------~l~~~L~~L~L 181 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG--------------------------SFSKLFTSMTI 181 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG--------------------------CCCTTCCEEEC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh--------------------------hhhhcCcEEEC
Confidence 888888887665555 345566777777777653333433221 12236777777
Q ss_pred ccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccc
Q 036119 620 EDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKAL 699 (839)
Q Consensus 620 ~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 699 (839)
++|.....++..+...+|+.|++++|.+.+..|..+..+++|+.|++++|......|. +..+++|++|++++|...+.+
T Consensus 182 ~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~ 260 (313)
T 1ogq_A 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260 (313)
T ss_dssp CSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECC
T ss_pred cCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcC
Confidence 7776655555555554589999999988888888888999999999999987666655 667789999999999888888
Q ss_pred cccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCC
Q 036119 700 PNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKI 742 (839)
Q Consensus 700 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 742 (839)
|..+..+++|+.|++++|++...+|....+++|+.|++++|+.
T Consensus 261 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 261 PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred ChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCC
Confidence 9899999999999999999988888877888999999999873
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.4e-19 Score=190.98 Aligned_cols=292 Identities=14% Similarity=0.082 Sum_probs=155.5
Q ss_pred CceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccC-CCCCCCCccEEEeccCccccccchhhhhCCCCccceEe
Q 036119 466 RLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFP-QAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLA 544 (839)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 544 (839)
+++.++++++.+ ..+|..+ .++|+.|++++|......+ ....+++|++|++++|......+..+ ..+++|++|+
T Consensus 34 ~l~~l~~~~~~l-~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGL-KAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF--SPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCC-SSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS--TTCTTCCEEE
T ss_pred cCCEEECCCCCc-cccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh--hCcCCCCEEE
Confidence 455555555544 3444433 2456666666653222212 13345566666666554332223332 4456666666
Q ss_pred cccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCC
Q 036119 545 IRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSK 624 (839)
Q Consensus 545 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~ 624 (839)
+++|... .+|.... ++|++|+++++. +..++...+. .+++|+.|++++|..
T Consensus 109 L~~n~l~-~l~~~~~-~~L~~L~l~~n~-i~~~~~~~~~--------------------------~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP-SSLVELRIHDNR-IRKVPKGVFS--------------------------GLRNMNCIEMGGNPL 159 (332)
T ss_dssp CCSSCCC-SCCSSCC-TTCCEEECCSSC-CCCCCSGGGS--------------------------SCSSCCEEECCSCCC
T ss_pred CCCCcCC-ccCcccc-ccCCEEECCCCc-cCccCHhHhC--------------------------CCccCCEEECCCCcc
Confidence 6665432 3432222 466666666553 2333322211 123455555555543
Q ss_pred ch--hhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccccccc
Q 036119 625 LE--SLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNC 702 (839)
Q Consensus 625 l~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~ 702 (839)
.. ..+..+...+|+.|++++|.+.+ +|..+ .++|++|++++|......+..+..+++|++|++++|...+..+..
T Consensus 160 ~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 160 ENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp BGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred ccCCCCcccccCCccCEEECcCCCCCc-cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 21 12222222356666666666543 44333 267777777777666555566667777777777777655555556
Q ss_pred CcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccce
Q 036119 703 MHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTN 781 (839)
Q Consensus 703 l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~ 781 (839)
+..+++|++|++++|.+. .+|.. ..+++|++|++++|++.+..+.. +... .+.....+|+.
T Consensus 237 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~----~~~~-------------~~~~~~~~l~~ 298 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND----FCPV-------------GFGVKRAYYNG 298 (332)
T ss_dssp GGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS----SSCS-------------SCCSSSCCBSE
T ss_pred hhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH----cccc-------------ccccccccccc
Confidence 777777777777777665 45543 55677777777777766432211 0000 00001246778
Q ss_pred eeecCCCCC--CccccCCCCCCccCeeeccCCC
Q 036119 782 LWISDMPDL--ESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 782 L~l~~~~~l--~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
|++++|+.. ...|..+..+++|+.+++++|.
T Consensus 299 L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred eEeecCcccccccCcccccccchhhhhhccccc
Confidence 888888765 4455566778888888888774
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=1.2e-19 Score=191.44 Aligned_cols=129 Identities=11% Similarity=-0.011 Sum_probs=80.5
Q ss_pred CcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccc
Q 036119 636 SLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKIS 715 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~ 715 (839)
+|++|++++|.+.+..|..+..+++|++|++++|......+..+..+++|++|++++|+. ..+|..+..+++|++|+++
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTCSSCCEEECC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC-ccCChhhccCCCcCEEECC
Confidence 444444444444444455666777777777777766655555666677777777777753 4677777777777777777
Q ss_pred cccCCccCCCC-------CCCCCcceEEecCCCCCC-ccccccCCCccccceEEEecC
Q 036119 716 ECPSVVSFPED-------GFPTNLQSLDVHDLKISK-PLLEWGSNRFTSLRRFTIWGG 765 (839)
Q Consensus 716 ~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~l~l~~~ 765 (839)
+|++....+.. ...++|+.|++++|++.. .++...+..+.+++.+++++|
T Consensus 272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 77765432221 123677888888887752 222234566777888877663
No 46
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=1.6e-22 Score=232.40 Aligned_cols=206 Identities=12% Similarity=0.062 Sum_probs=98.4
Q ss_pred HHHHHhcCCCceeEEEeCCCcccccccccccCc--CcCcEeEecCccccccccCCCCCCccccCCCccEEeccCcccccc
Q 036119 285 VLQMLLNHLPRLRVFSLCGYRNIFNLPNEIGNL--KHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQG 362 (839)
Q Consensus 285 ~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L--~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~ 362 (839)
.+...+..+++|++|+|++|......+..+... .+|++|++++|.. ..+.++. .....+++|++|++++| .+.+
T Consensus 103 ~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~--~~~~~l~-~~~~~~~~L~~L~L~~~-~~~~ 178 (592)
T 3ogk_B 103 WVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG--FTTDGLL-SIVTHCRKIKTLLMEES-SFSE 178 (592)
T ss_dssp HHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE--EEHHHHH-HHHHHCTTCSEEECTTC-EEEC
T ss_pred HHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC--cCHHHHH-HHHhhCCCCCEEECccc-cccC
Confidence 344455567777777777776333334445443 3477777777651 0010000 01123677777777776 3332
Q ss_pred C-------CCcCCCCccEEeecccCc-------ccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccc
Q 036119 363 T-------LPRRLLLLETLDITSCDQ-------LLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETR 428 (839)
Q Consensus 363 ~-------lp~~l~~L~~L~l~~~~~-------l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~ 428 (839)
. ++..+++|++|+++++.- ++..+..+++|++|++.+|....+ ..
T Consensus 179 ~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l---------------------~~ 237 (592)
T 3ogk_B 179 KDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL---------------------VG 237 (592)
T ss_dssp CCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG---------------------HH
T ss_pred cchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH---------------------HH
Confidence 2 233566677777665541 223344566666666666542110 01
Q ss_pred cCCCCCCCCceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcc-cCC
Q 036119 429 LPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVS-FPQ 507 (839)
Q Consensus 429 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-l~~ 507 (839)
....+++|+.|.+..+....... .....+... ++|+.|.++++.. ..+|..+..+++|++|++++|..... +..
T Consensus 238 ~~~~~~~L~~L~l~~~~~~~~~~---~~~~~l~~~-~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~ 312 (592)
T 3ogk_B 238 FFKAAANLEEFCGGSLNEDIGMP---EKYMNLVFP-RKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCT 312 (592)
T ss_dssp HHHHCTTCCEEEECBCCCCTTCT---TSSSCCCCC-TTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHH
T ss_pred HHhhhhHHHhhcccccccccchH---HHHHHhhcc-ccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHH
Confidence 23344566666655422111000 001111222 4566666655432 44555555566666666666541111 100
Q ss_pred -CCCCCCccEEEec
Q 036119 508 -AALPSQLRSVVIE 520 (839)
Q Consensus 508 -~~~~~~L~~L~l~ 520 (839)
...+++|+.|++.
T Consensus 313 ~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 313 LIQKCPNLEVLETR 326 (592)
T ss_dssp HHTTCTTCCEEEEE
T ss_pred HHHhCcCCCEEecc
Confidence 2345566666655
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=9.4e-20 Score=192.24 Aligned_cols=130 Identities=10% Similarity=-0.060 Sum_probs=84.6
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKI 714 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 714 (839)
++|+.|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|+. ..+|..+..+++|+.|++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC-CBCCTTGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC-eecChhhhcCccCCEEEC
Confidence 3455555555555555555667777788888887766655555566677888888887754 467777777888888888
Q ss_pred ccccCCccCCCC-------CCCCCcceEEecCCCCCC-ccccccCCCccccceEEEecC
Q 036119 715 SECPSVVSFPED-------GFPTNLQSLDVHDLKISK-PLLEWGSNRFTSLRRFTIWGG 765 (839)
Q Consensus 715 ~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~l~l~~~ 765 (839)
++|++....+.. ...++|+.|++++|++.. .++...+..+++|+.++++++
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 887765433222 114668888888888761 233334567888888888764
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=6.7e-21 Score=198.61 Aligned_cols=179 Identities=18% Similarity=0.163 Sum_probs=87.5
Q ss_pred CccceEecccCCCCc--CCC-CCCCCCCccEEEEcC-CCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccc
Q 036119 538 SSLECLAIRSCNSLV--SFP-EVALPSQLRTIIIGG-CHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQS 613 (839)
Q Consensus 538 ~~L~~L~l~~~~~l~--~~~-~~~~~~~L~~L~l~~-~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 613 (839)
.+++.|++++|.... .+| .+..+++|++|++++ +.....+|..+... ++|++|++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l---~~L~~L~Ls~n--------------- 111 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL---TQLHYLYITHT--------------- 111 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC---TTCSEEEEEEE---------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcC---CCCCEEECcCC---------------
Confidence 456677777665544 333 334555666666664 33222344332211 24444444444
Q ss_pred cceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCC-CcceEecc
Q 036119 614 LKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPST-KLTELTIY 691 (839)
Q Consensus 614 L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~ 691 (839)
.....++..+ ..++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|+++
T Consensus 112 ---------~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~ 182 (313)
T 1ogq_A 112 ---------NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182 (313)
T ss_dssp ---------CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred ---------eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc
Confidence 3332333222 224555555555555555555555555555555555554444554444444 55555555
Q ss_pred cccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCC
Q 036119 692 DCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 692 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 744 (839)
+|...+.+|..+..++ |+.|++++|.+....|.. ..+++|++|++++|.+.+
T Consensus 183 ~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 183 RNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp SSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred CCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 5554445555555554 555555555544333322 344555555555555443
No 49
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.84 E-value=3e-21 Score=242.14 Aligned_cols=197 Identities=24% Similarity=0.429 Sum_probs=153.2
Q ss_pred hhhhcCCC--cEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHHH-hCCCCeEeCCC-CCcccccCcC--
Q 036119 2 LKKQLFGK--KFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAER-MGADPVYQLKE-LSDDDCLDFT-- 75 (839)
Q Consensus 2 l~~~l~~k--~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~-~~~~~~~~~~~-l~~~~~~~~~-- 75 (839)
++..+.+| |+||||||||+. .+|+.+ ++|||||||||++.|+.. ++....++++. |+++|||+++
T Consensus 227 l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~ 297 (1249)
T 3sfz_A 227 LRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSL 297 (1249)
T ss_dssp HHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHH
T ss_pred HHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHH
Confidence 44556655 999999999875 455543 689999999999999954 45668999996 9999999543
Q ss_pred ----CCchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHHHHHhcccccc----CCC------CCcchhc------
Q 036119 76 ----RHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWNL----RDS------DILPALR------ 135 (839)
Q Consensus 76 ----~~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~~~~~~~~~~----~~~------~~~~~l~------ 135 (839)
..+.+.+.+.+|+++|+|+||||+++|+.|++++ ..|+..++...... ... .+...++
T Consensus 298 ~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L 375 (1249)
T 3sfz_A 298 FVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 375 (1249)
T ss_dssp HHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTS
T ss_pred hhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhC
Confidence 2345678899999999999999999999999874 46777665421111 111 1122222
Q ss_pred ---hhhhhhhhccCCCCcccChhHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHhccccccccCC-CcceeecHHHHH
Q 036119 136 ---LKQCFAYSSLFPKDYEFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYD-ASRFVMHDLIND 211 (839)
Q Consensus 136 ---~k~~f~~~a~f~~~~~~~~~~li~~w~~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~-~~~~~mHdlv~~ 211 (839)
.|.||.|||+||+++.|+.+.++.+|.++ ++.++.++++|++++|++..... ...|+|||++|+
T Consensus 376 ~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~ 443 (1249)
T 3sfz_A 376 REDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVD 443 (1249)
T ss_dssp CTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHH
T ss_pred CHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHH
Confidence 79999999999999999999999999543 36788999999999999976522 335999999999
Q ss_pred HHHHHccCce
Q 036119 212 LARWAAGEIC 221 (839)
Q Consensus 212 la~~i~~~e~ 221 (839)
+|+..+.+|.
T Consensus 444 ~~~~~~~~~~ 453 (1249)
T 3sfz_A 444 FLTEKNRSQL 453 (1249)
T ss_dssp HHHHHTGGGH
T ss_pred HHHhhhhHHH
Confidence 9999977653
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=1.3e-22 Score=233.05 Aligned_cols=101 Identities=10% Similarity=0.016 Sum_probs=57.6
Q ss_pred CCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcc----cCCCCCCCCccEEEeccCccccccchhhhhCCCCcc
Q 036119 465 CRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVS----FPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSL 540 (839)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~----l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 540 (839)
++|+.|++++|.. ..++..+..+++|+.|.++++..... ......+++|+.|.+.++. ...++..+ ..+++|
T Consensus 220 ~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~--~~~~~L 295 (592)
T 3ogk_B 220 RSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILF--PFAAQI 295 (592)
T ss_dssp TTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGG--GGGGGC
T ss_pred CCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHH--hhcCCC
Confidence 5788888888766 44667777788888888875432211 1223446777777776642 22333222 345677
Q ss_pred ceEecccCCCCcCCC--CCCCCCCccEEEEc
Q 036119 541 ECLAIRSCNSLVSFP--EVALPSQLRTIIIG 569 (839)
Q Consensus 541 ~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~ 569 (839)
++|++++|....... ....+++|+.|++.
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 777777765211110 12345566666665
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=5.8e-19 Score=186.10 Aligned_cols=173 Identities=12% Similarity=0.023 Sum_probs=117.2
Q ss_pred cccceeEeccCCCch--hhhhh-cCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceE
Q 036119 612 QSLKYLKIEDCSKLE--SLAER-LDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTEL 688 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~--~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 688 (839)
++|+.|++++|.... ..+.. ...++|+.|++++|.+.. +|..+ .++|++|++++|......+..+..+++|++|
T Consensus 145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 221 (330)
T 1xku_A 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKL 221 (330)
T ss_dssp TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 345555555554321 11211 223677777777777653 44443 3899999999998777667778888999999
Q ss_pred ecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCcccccc-----CCCccccceEEE
Q 036119 689 TIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWG-----SNRFTSLRRFTI 762 (839)
Q Consensus 689 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~-----~~~l~~L~~l~l 762 (839)
++++|...+..+..+..+++|++|++++|.+. .+|.. ..+++|++|++++|++.+..+... ....+.++.+++
T Consensus 222 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp ECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred ECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEe
Confidence 99999876666667889999999999999886 55543 678899999999999886433221 123578889999
Q ss_pred ecCCCCCcCCCC----CCcccceeeecCCC
Q 036119 763 WGGCPDLVSPPP----FPASLTNLWISDMP 788 (839)
Q Consensus 763 ~~~~~~~~~~~~----~~~~L~~L~l~~~~ 788 (839)
.+|......++. .+.+++.+++++|.
T Consensus 301 ~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ecCcccccccCccccccccceeEEEecccC
Confidence 887544322221 35678899998873
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=1.1e-22 Score=225.99 Aligned_cols=366 Identities=23% Similarity=0.196 Sum_probs=193.7
Q ss_pred HHHHhcCCCceeEEEeCCCcccc-----cccccccCcCcCcEeEecCccccccccCCCCCCccccCC----CccEEeccC
Q 036119 286 LQMLLNHLPRLRVFSLCGYRNIF-----NLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFP----KLRTLSLDN 356 (839)
Q Consensus 286 ~~~~~~~l~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~----~L~~L~L~~ 356 (839)
....+..+++|++|++++|. +. .+|..+..+++|++|++++|.+.+..+..+.. .+. +|++|++++
T Consensus 20 ~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~----~l~~~~~~L~~L~L~~ 94 (461)
T 1z7x_W 20 WAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ----GLQTPSCKIQKLSLQN 94 (461)
T ss_dssp HHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH----TTCSTTCCCCEEECTT
T ss_pred HHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH----HHhhCCCceeEEEccC
Confidence 44445666666777776666 44 34555666666777777666653322211110 122 466666665
Q ss_pred ccccccCCCcCCCCccEEeecccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCC
Q 036119 357 CCKLQGTLPRRLLLLETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSL 436 (839)
Q Consensus 357 ~~~l~~~lp~~l~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L 436 (839)
| .+.. .++..++..+..+++|++|++++|....... ......+....
T Consensus 95 n-~i~~--------------~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~---------------~~l~~~l~~~~--- 141 (461)
T 1z7x_W 95 C-CLTG--------------AGCGVLSSTLRTLPTLQELHLSDNLLGDAGL---------------QLLCEGLLDPQ--- 141 (461)
T ss_dssp S-CCBG--------------GGHHHHHHHTTSCTTCCEEECCSSBCHHHHH---------------HHHHHHHTSTT---
T ss_pred C-CCCH--------------HHHHHHHHHHccCCceeEEECCCCcCchHHH---------------HHHHHHHhcCC---
Confidence 4 2220 0011335667778888888888775321000 00000000001
Q ss_pred CceecccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCc----cccccCCCCCccEEeecCCCCCcccCC-C---
Q 036119 437 NWLQISRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTR----LPQALLTLSSLTEMRIHDCASLVSFPQ-A--- 508 (839)
Q Consensus 437 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~l~~-~--- 508 (839)
++|++|++++|.+... ++..+..+++|++|++++|......+. .
T Consensus 142 ----------------------------~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 193 (461)
T 1z7x_W 142 ----------------------------CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQG 193 (461)
T ss_dssp ----------------------------CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred ----------------------------CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHH
Confidence 3577777777766442 344556677788888877753221100 0
Q ss_pred --CCCCCccEEEeccCccccc----cchhhhhCCCCccceEecccCCCCcC----C-CC-CCCCCCccEEEEcCCCCCcC
Q 036119 509 --ALPSQLRSVVIEECDALES----LPEAWMQNSNSSLECLAIRSCNSLVS----F-PE-VALPSQLRTIIIGGCHALES 576 (839)
Q Consensus 509 --~~~~~L~~L~l~~~~~l~~----~~~~~~~~~~~~L~~L~l~~~~~l~~----~-~~-~~~~~~L~~L~l~~~~~l~~ 576 (839)
...++|+.|++++|..... ++..+ ..+++|++|++++|..... + +. ....++|++|++++|. +..
T Consensus 194 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~ 270 (461)
T 1z7x_W 194 LKDSPCQLEALKLESCGVTSDNCRDLCGIV--ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITA 270 (461)
T ss_dssp HHHSCCCCCEEECTTSCCBTTHHHHHHHHH--HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCH
T ss_pred HhcCCCCceEEEccCCCCcHHHHHHHHHHH--HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCH
Confidence 0134677777776643221 22222 2346666676666642211 0 00 1123455555555552 221
Q ss_pred CchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhh----hhhcC--CCCcceeeecccccccC
Q 036119 577 LPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESL----AERLD--NTSLEEISISVLENLKS 650 (839)
Q Consensus 577 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~----~~~~~--~~~L~~L~l~~~~~~~~ 650 (839)
..... ++......++|++|++++|...... ...+. .++|++|++++|.+.+.
T Consensus 271 ~~~~~----------------------l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 271 KGCGD----------------------LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp HHHHH----------------------HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHHHH----------------------HHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 00000 0100011245777777776543221 11111 15788888888877654
Q ss_pred ----ccccccCCCCCCeEEecCCCCCcccCCCCC-----CCCCcceEecccccccc----cccccCcccccccccccccc
Q 036119 651 ----LPADLHNLHHLQKIWIFGCPNLESFPEEGL-----PSTKLTELTIYDCENLK----ALPNCMHNLTSLLNLKISEC 717 (839)
Q Consensus 651 ----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~l~~~ 717 (839)
++..+..+++|++|++++|...+..+..+. ..++|++|++++|+... .+|..+..+++|++|++++|
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 455666778888888888866543222111 25688899998887654 67777888888888888888
Q ss_pred cCCcc--------CCCCCCCCCcceEEecCCCCCC
Q 036119 718 PSVVS--------FPEDGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 718 ~~~~~--------~~~~~~~~~L~~L~l~~~~~~~ 744 (839)
++... +| ....+|+.|++.++....
T Consensus 409 ~i~~~~~~~l~~~l~--~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 409 CLGDAGILQLVESVR--QPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp SCCHHHHHHHHHHHT--STTCCCCEEECTTCCCCH
T ss_pred CCCHHHHHHHHHHhc--cCCcchhheeecccccCH
Confidence 77542 12 123468888887776653
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=1.3e-18 Score=196.31 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=57.1
Q ss_pred CceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCCCCccE
Q 036119 294 PRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRLLLLET 373 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l~~L~~ 373 (839)
.++++|++++|. +..+|..+. ++|++|++++|.+. .+|. . +++|++|++++| .++ .+|..+++|++
T Consensus 40 ~~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~l~-~lp~---~-----l~~L~~L~Ls~N-~l~-~lp~~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNNLT-SLPA---L-----PPELRTLEVSGN-QLT-SLPVLPPGLLE 105 (622)
T ss_dssp HCCCEEECCSSC-CSCCCSCCC--TTCSEEEECSCCCS-CCCC---C-----CTTCCEEEECSC-CCS-CCCCCCTTCCE
T ss_pred CCCcEEEecCCC-cCccChhhC--CCCcEEEecCCCCC-CCCC---c-----CCCCCEEEcCCC-cCC-cCCCCCCCCCE
Confidence 469999999999 889998876 89999999999985 4665 2 789999999996 566 56665556666
Q ss_pred Eeeccc
Q 036119 374 LDITSC 379 (839)
Q Consensus 374 L~l~~~ 379 (839)
|++++|
T Consensus 106 L~Ls~N 111 (622)
T 3g06_A 106 LSIFSN 111 (622)
T ss_dssp EEECSC
T ss_pred EECcCC
Confidence 655554
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=9.7e-19 Score=183.30 Aligned_cols=230 Identities=24% Similarity=0.304 Sum_probs=145.6
Q ss_pred CCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC-CCCCCCccEEEeccCccccccchhhhhCCCCccceE
Q 036119 465 CRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNSSLECL 543 (839)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 543 (839)
++++.|++++|.+ ..+|..+..+++|++|++++|... .+|. ...+++|++|++++|... .+|..+ ..+++|+.|
T Consensus 81 ~~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l--~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI--ASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG--GGCTTCCEE
T ss_pred cceeEEEccCCCc-hhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH--hcCcCCCEE
Confidence 5889999999988 488888888999999999998654 6664 345778888888887543 555544 445677777
Q ss_pred ecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCC
Q 036119 544 AIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCS 623 (839)
Q Consensus 544 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~ 623 (839)
++++|.....+|.. +....+.+. ...+++|+.|++++|.
T Consensus 156 ~L~~n~~~~~~p~~-----~~~~~~~~~------------------------------------~~~l~~L~~L~L~~n~ 194 (328)
T 4fcg_A 156 SIRACPELTELPEP-----LASTDASGE------------------------------------HQGLVNLQSLRLEWTG 194 (328)
T ss_dssp EEEEETTCCCCCSC-----SEEEC-CCC------------------------------------EEESTTCCEEEEEEEC
T ss_pred ECCCCCCccccChh-----Hhhccchhh------------------------------------hccCCCCCEEECcCCC
Confidence 77776666555531 110000000 0001234444444432
Q ss_pred Cchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccccccc
Q 036119 624 KLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNC 702 (839)
Q Consensus 624 ~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~ 702 (839)
.. .++..+ ..++|+.|++++|.+.+ +|..+..+++|++|++++|...+.+|..+..+++|++|++++|+..+.+|..
T Consensus 195 l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~ 272 (328)
T 4fcg_A 195 IR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272 (328)
T ss_dssp CC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred cC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh
Confidence 22 222222 22556666666665543 4445667777777777777777777777777777777777777777777777
Q ss_pred CcccccccccccccccCCccCCCC-CCCCCcceEEecCCCC
Q 036119 703 MHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKI 742 (839)
Q Consensus 703 l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~ 742 (839)
+.++++|+.|++++|+.++.+|.. +.+++|+.+++..+.+
T Consensus 273 ~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 777777777777777777777654 5667777777765543
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=6.4e-19 Score=184.66 Aligned_cols=220 Identities=19% Similarity=0.199 Sum_probs=113.6
Q ss_pred CCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhc-CCCCcce
Q 036119 561 SQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERL-DNTSLEE 639 (839)
Q Consensus 561 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~ 639 (839)
++++.|+++++. +..+|...... ++|++|++++|... .++.....+++|++|++++|... .++..+ ..++|++
T Consensus 81 ~~l~~L~L~~n~-l~~lp~~l~~l---~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 81 PGRVALELRSVP-LPQFPDQAFRL---SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp TTCCEEEEESSC-CSSCCSCGGGG---TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred cceeEEEccCCC-chhcChhhhhC---CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 477777777764 44666544331 35666666665433 33332233345555555555333 333222 2245555
Q ss_pred eeecccccccCccccccC---------CCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccc
Q 036119 640 ISISVLENLKSLPADLHN---------LHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLL 710 (839)
Q Consensus 640 L~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~ 710 (839)
|++++|+..+.+|..+.. +++|++|++++|.+. .+|..+..+++|++|++++|... .+|..+..+++|+
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE 232 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCC
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCC
Confidence 555555555544443332 555555555555333 44444444455555555554332 2444445555555
Q ss_pred ccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCC
Q 036119 711 NLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPD 789 (839)
Q Consensus 711 ~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 789 (839)
+|++++|.+...+|.. +.+++|++|++++|.+.+.+|.. +. -+++|+.|++++|+.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~----------------------~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IH----------------------RLTQLEKLDLRGCVN 289 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GG----------------------GCTTCCEEECTTCTT
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hh----------------------cCCCCCEEeCCCCCc
Confidence 5555555554444433 34445555555555444433321 00 124677777777777
Q ss_pred CCccccCCCCCCccCeeeccCC
Q 036119 790 LESISSIGENLTSLKTLRLSDC 811 (839)
Q Consensus 790 l~~~~~~~~~l~~L~~L~l~~c 811 (839)
.+.+|..+.++++|+.+.+..+
T Consensus 290 ~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 290 LSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCCGGGGGSCTTCEEECCGG
T ss_pred hhhccHHHhhccCceEEeCCHH
Confidence 7777777777777777777754
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=1.2e-21 Score=217.52 Aligned_cols=369 Identities=16% Similarity=0.104 Sum_probs=226.9
Q ss_pred CCceEEEeccCCCCCcccc-ccCCCCCccEEeecCCCCCc----ccCC-CCCCCCccEEEeccCccccccchhhhhCCCC
Q 036119 465 CRLQFLELSCCEGLTRLPQ-ALLTLSSLTEMRIHDCASLV----SFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNS 538 (839)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~----~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 538 (839)
++|+.|+++++.+...... .+..+++|++|++++|.... .++. ...+++|++|++++|......+..+. ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL-QGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH-HTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH-HHHh
Confidence 5778888877776432222 25667788888888875332 1221 23457788888887763322222221 2233
Q ss_pred ----ccceEecccCCCCc----CCC-CCCCCCCccEEEEcCCCCCcCCchhhhcc--cCCCCcceEEEeecCCcccc---
Q 036119 539 ----SLECLAIRSCNSLV----SFP-EVALPSQLRTIIIGGCHALESLPEAWMHN--ELPATLEHLEVSYCSNLALL--- 604 (839)
Q Consensus 539 ----~L~~L~l~~~~~l~----~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~--- 604 (839)
+|++|++++|.... .++ .+..+++|++|++++|..-...+...... ...++|++|++++|......
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 68888888876442 122 33556688888888875321111111111 00136888888887533211
Q ss_pred -cCCCCcccccceeEeccCCCchhhhhh----c--CCCCcceeeecccccccC----ccccccCCCCCCeEEecCCCCCc
Q 036119 605 -SRNGNLPQSLKYLKIEDCSKLESLAER----L--DNTSLEEISISVLENLKS----LPADLHNLHHLQKIWIFGCPNLE 673 (839)
Q Consensus 605 -~~~~~~~~~L~~L~l~~~~~l~~~~~~----~--~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~ 673 (839)
+......++|++|++++|......... + ..++|++|++++|.+... ++..+..+++|++|++++|....
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 111112357999999988744332221 1 246899999999988763 56667788999999999997544
Q ss_pred cc-----CCCCCCCCCcceEeccccccccc----ccccCcccccccccccccccCCccCCCC------CCCCCcceEEec
Q 036119 674 SF-----PEEGLPSTKLTELTIYDCENLKA----LPNCMHNLTSLLNLKISECPSVVSFPED------GFPTNLQSLDVH 738 (839)
Q Consensus 674 ~~-----~~~~~~~~~L~~L~l~~~~~l~~----lp~~l~~l~~L~~L~l~~~~~~~~~~~~------~~~~~L~~L~l~ 738 (839)
.. +.....+++|++|++++|..... ++..+..+++|++|++++|.+....+.. ...++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 21 22223467999999999965543 6777788899999999999764322111 223689999999
Q ss_pred CCCCCCccc---cccCCCccccceEEEecCCCCCcC-------CCCCCcccceeeecCCCCCC----ccccCCCCCCccC
Q 036119 739 DLKISKPLL---EWGSNRFTSLRRFTIWGGCPDLVS-------PPPFPASLTNLWISDMPDLE----SISSIGENLTSLK 804 (839)
Q Consensus 739 ~~~~~~~~~---~~~~~~l~~L~~l~l~~~~~~~~~-------~~~~~~~L~~L~l~~~~~l~----~~~~~~~~l~~L~ 804 (839)
+|.+.+... ......+++|+.|++++|...-.. +....++|+.|++++|.... .+|..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 998875321 112345688999999875221111 11114589999999997764 6777777789999
Q ss_pred eeeccCCCCccccCCC----CC---CcccceeeecCCC
Q 036119 805 TLRLSDCPKLKYFSEQ----GL---PKSLLQLHIYACP 835 (839)
Q Consensus 805 ~L~l~~c~~l~~l~~~----~~---~~sL~~L~i~~c~ 835 (839)
+|++++| .++..... .+ ..+|+.|++.++.
T Consensus 402 ~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 402 ELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp EEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred EEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 9999998 45442110 11 1367777776654
No 57
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=3.1e-21 Score=221.77 Aligned_cols=88 Identities=16% Similarity=0.091 Sum_probs=49.9
Q ss_pred ccCCCCCCeEEecCCCCCcccCCCCC-CCCCcceEecccccccccccccC-cccccccccccccccCCccCCC--CCCCC
Q 036119 655 LHNLHHLQKIWIFGCPNLESFPEEGL-PSTKLTELTIYDCENLKALPNCM-HNLTSLLNLKISECPSVVSFPE--DGFPT 730 (839)
Q Consensus 655 ~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~lp~~l-~~l~~L~~L~l~~~~~~~~~~~--~~~~~ 730 (839)
+..+++|+.|++++ ......+..+. .+++|+.|++++|......+..+ ..+++|++|++++|++...... ...++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 44567777777765 23322222222 25677777777776544333333 5567777777777776322111 13457
Q ss_pred CcceEEecCCCCC
Q 036119 731 NLQSLDVHDLKIS 743 (839)
Q Consensus 731 ~L~~L~l~~~~~~ 743 (839)
+|++|++++|+++
T Consensus 507 ~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 507 TMRSLWMSSCSVS 519 (594)
T ss_dssp GSSEEEEESSCCB
T ss_pred CCCEEeeeCCCCC
Confidence 7777888777764
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=2.8e-17 Score=185.39 Aligned_cols=91 Identities=33% Similarity=0.401 Sum_probs=57.8
Q ss_pred CceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccccchhhhhCCCCccceEec
Q 036119 466 RLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALESLPEAWMQNSNSSLECLAI 545 (839)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 545 (839)
+++.|++++|.+ ..+|..+. ++|+.|++++|. ++.+|. .+++|+.|++++|. ++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCC-SCCCSCCC--TTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEEE
T ss_pred CCcEEEecCCCc-CccChhhC--CCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEEC
Confidence 577788887776 46676554 678888888773 445655 56777777777775 444443 3466777777
Q ss_pred ccCCCCcCCCCCCCCCCccEEEEcCC
Q 036119 546 RSCNSLVSFPEVALPSQLRTIIIGGC 571 (839)
Q Consensus 546 ~~~~~l~~~~~~~~~~~L~~L~l~~~ 571 (839)
++|.. ..+|. .+++|+.|++++|
T Consensus 109 s~N~l-~~l~~--~l~~L~~L~L~~N 131 (622)
T 3g06_A 109 FSNPL-THLPA--LPSGLCKLWIFGN 131 (622)
T ss_dssp CSCCC-CCCCC--CCTTCCEEECCSS
T ss_pred cCCcC-CCCCC--CCCCcCEEECCCC
Confidence 66543 33443 4456666666665
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=1.3e-17 Score=183.78 Aligned_cols=241 Identities=15% Similarity=0.173 Sum_probs=147.5
Q ss_pred cEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcC-CCCcceeee
Q 036119 564 RTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLD-NTSLEEISI 642 (839)
Q Consensus 564 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l 642 (839)
..++..+. .+..+|.. +|++++.|+++++......+.....+++|+.|++++|......+..+. .++|++|++
T Consensus 57 ~~v~c~~~-~l~~iP~~-----~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 57 SKVVCTRR-GLSEVPQG-----IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp CEEECCSS-CCSSCCSC-----CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cEEEECCC-CcCccCCC-----CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 34443332 45566643 345788888888765444343344456788888887754443333333 477888888
Q ss_pred cccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccc-cCcccccccccccccccCCc
Q 036119 643 SVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPN-CMHNLTSLLNLKISECPSVV 721 (839)
Q Consensus 643 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~ 721 (839)
++|++....+..+..+++|++|++++|.+....+..+..+++|+.|++++|+.++.++. .+..+++|+.|++++|.+.
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 209 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK- 209 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-
Confidence 88877665555677788888888888866544444666777888888887777776655 4677788888888887765
Q ss_pred cCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccCCCCCC
Q 036119 722 SFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLT 801 (839)
Q Consensus 722 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~ 801 (839)
.+|....+++|++|++++|.+.+..+. .+..+++ |+.|++++|......+..+..++
T Consensus 210 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~----------------------L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 210 DMPNLTPLVGLEELEMSGNHFPEIRPG-SFHGLSS----------------------LKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp SCCCCTTCTTCCEEECTTSCCSEECGG-GGTTCTT----------------------CCEEECTTSCCCEECTTTTTTCT
T ss_pred ccccccccccccEEECcCCcCcccCcc-cccCccC----------------------CCEEEeCCCcCceECHHHhcCCC
Confidence 456666777888888888877754333 2344444 45555555544444444445555
Q ss_pred ccCeeeccCCCCccccCCCCC--CcccceeeecCCC
Q 036119 802 SLKTLRLSDCPKLKYFSEQGL--PKSLLQLHIYACP 835 (839)
Q Consensus 802 ~L~~L~l~~c~~l~~l~~~~~--~~sL~~L~i~~c~ 835 (839)
+|+.|++++| +++.++...+ .++|+.|++++||
T Consensus 267 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 267 SLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 5555555555 4444444322 2345555555543
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=2.8e-17 Score=180.45 Aligned_cols=241 Identities=12% Similarity=0.087 Sum_probs=148.0
Q ss_pred ccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcC-CCCcceee
Q 036119 563 LRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLD-NTSLEEIS 641 (839)
Q Consensus 563 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~ 641 (839)
...++..+ ..+..+|... +++++.|++++|......+.....+++|+.|++++|......+..+. .++|++|+
T Consensus 45 ~~~v~c~~-~~l~~iP~~~-----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 45 FSKVICVR-KNLREVPDGI-----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp SCEEECCS-CCCSSCCSCC-----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE
T ss_pred CCEEEeCC-CCcCcCCCCC-----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE
Confidence 34444444 3466666533 35788888888764443333344456788888888764443333333 47888888
Q ss_pred ecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccc-cCcccccccccccccccCC
Q 036119 642 ISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPN-CMHNLTSLLNLKISECPSV 720 (839)
Q Consensus 642 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~ 720 (839)
+++|++....+..+..+++|++|++++|.+....+..+..+++|++|++++|+.++.++. .+.++++|+.|++++|.+.
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 888877765555677888888888888876655555677778888888888777776655 5777888888888888765
Q ss_pred ccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCC--CCCCcccceeeecCCCCCCccccCCC
Q 036119 721 VSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSP--PPFPASLTNLWISDMPDLESISSIGE 798 (839)
Q Consensus 721 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~ 798 (839)
.+|....+++|++|++++|.+.+..+. .+..+++|+.|++++|....... ...+++|+.|++++|......+..+.
T Consensus 199 -~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 199 -EIPNLTPLIKLDELDLSGNHLSAIRPG-SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp -SCCCCTTCSSCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred -cccccCCCcccCEEECCCCccCccChh-hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 566667778888888888877754332 34455555555555432111100 01233455555555544333333334
Q ss_pred CCCccCeeeccCC
Q 036119 799 NLTSLKTLRLSDC 811 (839)
Q Consensus 799 ~l~~L~~L~l~~c 811 (839)
.+++|+.|++++|
T Consensus 277 ~l~~L~~L~L~~N 289 (440)
T 3zyj_A 277 PLHHLERIHLHHN 289 (440)
T ss_dssp SCTTCCEEECCSS
T ss_pred cccCCCEEEcCCC
Confidence 4555555555554
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=1.8e-17 Score=172.67 Aligned_cols=177 Identities=19% Similarity=0.090 Sum_probs=107.1
Q ss_pred cccceeEeccCCCchhhhhhcCCCCcceeeecccccccCcc-ccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEec
Q 036119 612 QSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLP-ADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTI 690 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 690 (839)
++|++|++++|............++|++|++++|.+.+..+ ..+..+++|++|++++|......+..+..+++|++|++
T Consensus 78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 45666666665433211222334677777777776655443 45667777777777777666656666666777777777
Q ss_pred ccccccc-cccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCC
Q 036119 691 YDCENLK-ALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPD 768 (839)
Q Consensus 691 ~~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 768 (839)
++|...+ .+|..+..+++|++|++++|.+....|.. ..+++|++|++++|.+.+..+. .+..++
T Consensus 158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~------------- 223 (306)
T 2z66_A 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF-PYKCLN------------- 223 (306)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG-GGTTCT-------------
T ss_pred CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh-hccCcc-------------
Confidence 7776554 46667777777777777777766554433 4567777777777776643221 122223
Q ss_pred CcCCCCCCcccceeeecCCCCCCccccCCCCCC-ccCeeeccCC
Q 036119 769 LVSPPPFPASLTNLWISDMPDLESISSIGENLT-SLKTLRLSDC 811 (839)
Q Consensus 769 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~-~L~~L~l~~c 811 (839)
+|+.|++++|...+..|..+..++ +|+.|++++|
T Consensus 224 ---------~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 224 ---------SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp ---------TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred ---------cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 455555555655555555555553 5666666655
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=8.1e-18 Score=179.07 Aligned_cols=267 Identities=13% Similarity=0.095 Sum_probs=124.5
Q ss_pred eEecccCCCCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEecc
Q 036119 542 CLAIRSCNSLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIED 621 (839)
Q Consensus 542 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~ 621 (839)
..+.+++ .++.+|. ..+++|++|+++++. +..++...+... ++|+.|++++|......+.....+++|++|++++
T Consensus 35 ~c~~~~~-~l~~iP~-~~~~~L~~L~l~~n~-i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 35 ICKGSSG-SLNSIPS-GLTEAVKSLDLSNNR-ITYISNSDLQRC--VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp EEECCST-TCSSCCT-TCCTTCCEEECTTSC-CCEECTTTTTTC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeeCCCC-Ccccccc-cccccCcEEECCCCc-CcccCHHHhccC--CCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 3444443 3445554 234578888888774 444443222221 3566666665533222222222234555555555
Q ss_pred CCCchhhhhhc-CCCCcceeeecccccccCcc-ccccCCCCCCeEEecCCCCCccc-CCCCCCCCCcceEeccccccccc
Q 036119 622 CSKLESLAERL-DNTSLEEISISVLENLKSLP-ADLHNLHHLQKIWIFGCPNLESF-PEEGLPSTKLTELTIYDCENLKA 698 (839)
Q Consensus 622 ~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~ 698 (839)
|......+..+ ..++|++|++++|++....+ ..+..+++|++|++++|.....+ +..+..+++|++|++++|...+.
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 54332222212 23555555555555443222 23445555555555555322222 33444555555555555554444
Q ss_pred ccccCcccccccccccccccCCccCCCC--CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCC
Q 036119 699 LPNCMHNLTSLLNLKISECPSVVSFPED--GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFP 776 (839)
Q Consensus 699 lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 776 (839)
.|..+..+++|++|++++|.+. .+|.. ..+++|++|++++|.+.+..+.. ++ .....
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----l~----------------~~~~~ 248 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSE----LS----------------TGETN 248 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------CC
T ss_pred CHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccc----cc----------------ccccc
Confidence 4555555555555555555542 22211 12455555555555554321110 00 00012
Q ss_pred cccceeeecCCCCCC----ccccCCCCCCccCeeeccCCCCccccCCCC--CCcccceeeecCCC
Q 036119 777 ASLTNLWISDMPDLE----SISSIGENLTSLKTLRLSDCPKLKYFSEQG--LPKSLLQLHIYACP 835 (839)
Q Consensus 777 ~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~sL~~L~i~~c~ 835 (839)
..++.++++++.... .+|..+..+++|+.|++++| +++.+|... -.++|++|++++|+
T Consensus 249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred chhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 344555555554322 24444455666666666665 555555432 12456666666654
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=3.4e-17 Score=180.52 Aligned_cols=227 Identities=18% Similarity=0.167 Sum_probs=139.6
Q ss_pred CcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC-CCCCCCccEEEeccCccccccchhhhhCCCCccc
Q 036119 463 LPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNSSLE 541 (839)
Q Consensus 463 l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 541 (839)
+|++++.|++++|.+....+..+.++++|+.|++++|......+. ...+++|+.|++++|. +..++...+ ..+++|+
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~ 150 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAF-EYLSKLR 150 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTS-SSCTTCC
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhh-cccCCCC
Confidence 346899999999988666677888999999999998854433322 3457888888888876 344443322 4567788
Q ss_pred eEecccCCCCcCCC--CCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEe
Q 036119 542 CLAIRSCNSLVSFP--EVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKI 619 (839)
Q Consensus 542 ~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l 619 (839)
+|++++|... .++ .+..+++|+.|++++|..+..++...+. .+++|+.|++
T Consensus 151 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~--------------------------~l~~L~~L~L 203 (452)
T 3zyi_A 151 ELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE--------------------------GLFNLKYLNL 203 (452)
T ss_dssp EEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTT--------------------------TCTTCCEEEC
T ss_pred EEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhcc--------------------------CCCCCCEEEC
Confidence 8888777543 333 2345566666666666555544432222 1234555555
Q ss_pred ccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccc
Q 036119 620 EDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKAL 699 (839)
Q Consensus 620 ~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 699 (839)
++|.. ..++.....++|+.|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.|++++|+.....
T Consensus 204 ~~n~l-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 204 GMCNI-KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp TTSCC-SSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCCcc-cccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 55532 22333333456666666666666655666666666666666666665555555666666666666666544433
Q ss_pred cccCcccccccccccccccC
Q 036119 700 PNCMHNLTSLLNLKISECPS 719 (839)
Q Consensus 700 p~~l~~l~~L~~L~l~~~~~ 719 (839)
+..+..+++|+.|++++|+.
T Consensus 283 ~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTSSTTCTTCCEEECCSSCE
T ss_pred hHHhccccCCCEEEccCCCc
Confidence 44456666666666666654
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=1.7e-19 Score=207.17 Aligned_cols=133 Identities=16% Similarity=0.236 Sum_probs=66.3
Q ss_pred cccccccccccccccccchhhhHHHHHHHhcCCCceeEEEeCCCccccc--ccccccCcCcCcEeEecCccccccccCCC
Q 036119 261 DVEHLRTFLPMELSHFDENYLAWSVLQMLLNHLPRLRVFSLCGYRNIFN--LPNEIGNLKHLRCLNLSRTKWEEWIPCGA 338 (839)
Q Consensus 261 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~--lp~~i~~L~~L~~L~L~~~~~~~~~p~~~ 338 (839)
.+++|+.| .+..+.+....+......+++|++|++++|..++. ++..+.++++|++|++++|.+.+..+..+
T Consensus 103 ~~~~L~~L------~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 103 SYTWLEEI------RLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp HCTTCCEE------EEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred hCCCCCeE------EeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 34555555 22333333333333333566777777776632433 44444466777777777776543322211
Q ss_pred CCCccccCCCccEEeccCcc-cccc----CCCcCCCCccEEeecccC---cccccCCCCCCccEEEeccc
Q 036119 339 GQEVDEVFPKLRTLSLDNCC-KLQG----TLPRRLLLLETLDITSCD---QLLVTIQCLPALSELQIDGC 400 (839)
Q Consensus 339 ~~~~~~~l~~L~~L~L~~~~-~l~~----~lp~~l~~L~~L~l~~~~---~l~~~l~~l~~L~~L~l~~~ 400 (839)
.. ....+++|++|++++|. .+.. .+...+++|++|++.+|. .++..+..+++|++|++..+
T Consensus 177 ~~-~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 177 SH-FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp GG-SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HH-HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 11 11225677777777653 0110 011134666666666653 23444555666666665544
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=7.4e-17 Score=177.07 Aligned_cols=231 Identities=16% Similarity=0.083 Sum_probs=157.0
Q ss_pred CCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhh
Q 036119 550 SLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLA 629 (839)
Q Consensus 550 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 629 (839)
.+..+|. ..+++++.|+++++. +..++...+... ++|+.|++++|......+.....+++|++|++++|......+
T Consensus 54 ~l~~iP~-~~~~~l~~L~L~~n~-i~~~~~~~~~~l--~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 129 (440)
T 3zyj_A 54 NLREVPD-GISTNTRLLNLHENQ-IQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN 129 (440)
T ss_dssp CCSSCCS-CCCTTCSEEECCSCC-CCEECTTTTSSC--SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCT
T ss_pred CcCcCCC-CCCCCCcEEEccCCc-CCeeCHHHhhCC--CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCH
Confidence 3445553 334688888888874 444443333332 478888888886443332323345678888888875443323
Q ss_pred hhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCC-CCCCCCCcceEecccccccccccccCcccc
Q 036119 630 ERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPE-EGLPSTKLTELTIYDCENLKALPNCMHNLT 707 (839)
Q Consensus 630 ~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~ 707 (839)
..+ ..++|+.|++++|.+....+..+..+++|++|++++|.....++. .+..+++|++|++++|. +..+| .+..++
T Consensus 130 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~ 207 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NLTPLI 207 (440)
T ss_dssp TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC-CCTTCS
T ss_pred hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc-ccCCCc
Confidence 223 347888888888888766666777888888888888777666655 56678888888888885 44566 477888
Q ss_pred cccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCC----CCccccee
Q 036119 708 SLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP----FPASLTNL 782 (839)
Q Consensus 708 ~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~----~~~~L~~L 782 (839)
+|++|++++|.+....|.. ..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|. +..++. .+++|+.|
T Consensus 208 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNN--LTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSC--CCCCCTTTTSSCTTCCEE
T ss_pred ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCC--CCccChhHhccccCCCEE
Confidence 8888888888877655544 667888888888888876433 345678888888888753 333332 35678888
Q ss_pred eecCCCC
Q 036119 783 WISDMPD 789 (839)
Q Consensus 783 ~l~~~~~ 789 (839)
++++|+.
T Consensus 285 ~L~~Np~ 291 (440)
T 3zyj_A 285 HLHHNPW 291 (440)
T ss_dssp ECCSSCE
T ss_pred EcCCCCc
Confidence 8888874
No 66
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.73 E-value=1.8e-18 Score=197.67 Aligned_cols=191 Identities=26% Similarity=0.450 Sum_probs=141.1
Q ss_pred hhhcCC--CcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHHHHhCCCCeEeC---CCCCcccccCcCC-
Q 036119 3 KKQLFG--KKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVAERMGADPVYQL---KELSDDDCLDFTR- 76 (839)
Q Consensus 3 ~~~l~~--k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~~~~~~~---~~l~~~~~~~~~~- 76 (839)
++.+.+ +++||||||||+. .+++. .++|++||||||++.++..++ ...|++ ++|+++||++++.
T Consensus 228 ~~~l~~~~~~~LLVLDdv~~~--~~l~~-------l~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~ 297 (591)
T 1z6t_A 228 RILMLRKHPRSLLILDDVWDS--WVLKA-------FDSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSL 297 (591)
T ss_dssp HHHHHHTCTTCEEEEEEECCH--HHHHT-------TCSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHH
T ss_pred HHHHccCCCCeEEEEeCCCCH--HHHHH-------hcCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHH
Confidence 344444 7999999999874 34432 367899999999999887654 345665 4899999995432
Q ss_pred -----CchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHHHHHhccccc----cCCC------CCcchhc------
Q 036119 77 -----HQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKTDIWN----LRDS------DILPALR------ 135 (839)
Q Consensus 77 -----~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~~~~~~~~~----~~~~------~~~~~l~------ 135 (839)
...+.+.+.+|+++|+|+|+|++.+|+.++++. ..|+..++..... +... .+...++
T Consensus 298 ~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L 375 (591)
T 1z6t_A 298 FVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 375 (591)
T ss_dssp HHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTS
T ss_pred HhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhC
Confidence 223467899999999999999999999998863 4687766532111 1100 1111122
Q ss_pred ---hhhhhhhhccCCCCcccChhHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHhccccccccC-CCcceeecHHHHH
Q 036119 136 ---LKQCFAYSSLFPKDYEFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSY-DASRFVMHDLIND 211 (839)
Q Consensus 136 ---~k~~f~~~a~f~~~~~~~~~~li~~w~~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~-~~~~~~mHdlv~~ 211 (839)
.|.||.++|+||+|+.|+.+.++.+|.+. .+.+..++.+|+++++++.... ....|.||+++|+
T Consensus 376 ~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~ 443 (591)
T 1z6t_A 376 REDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVD 443 (591)
T ss_dssp CTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHH
T ss_pred CHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHH
Confidence 79999999999999999999999999532 2456788999999999986542 2357999999999
Q ss_pred HHHHHc
Q 036119 212 LARWAA 217 (839)
Q Consensus 212 la~~i~ 217 (839)
+++...
T Consensus 444 ~~~~~~ 449 (591)
T 1z6t_A 444 FLTEKN 449 (591)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 999774
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=3.2e-17 Score=170.69 Aligned_cols=133 Identities=17% Similarity=0.108 Sum_probs=94.0
Q ss_pred cccceeEeccCCCchhhhhhcC-CCCcceeeeccccccc-CccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEe
Q 036119 612 QSLKYLKIEDCSKLESLAERLD-NTSLEEISISVLENLK-SLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELT 689 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 689 (839)
++|+.|++++|......+..+. .++|++|++++|.+.+ .+|..+..+++|++|++++|......|..+..+++|++|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 3455555555543333333222 3667777777776655 4666778888899999998877766677777888899999
Q ss_pred cccccccccccccCcccccccccccccccCCccCCCC-CCC-CCcceEEecCCCCCC
Q 036119 690 IYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFP-TNLQSLDVHDLKISK 744 (839)
Q Consensus 690 l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~-~~L~~L~l~~~~~~~ 744 (839)
+++|...+..+..+..+++|+.|++++|++....+.. ..+ ++|++|++++|++.+
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 9888766655556788888999999988887766644 333 588999999888764
No 68
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=5.8e-17 Score=172.40 Aligned_cols=255 Identities=13% Similarity=0.101 Sum_probs=161.5
Q ss_pred CcCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCC-CCCCCCccEEEeccCccccccchhhhhCCCCccc
Q 036119 463 LPCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQ-AALPSQLRSVVIEECDALESLPEAWMQNSNSSLE 541 (839)
Q Consensus 463 l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 541 (839)
++++|+.|++++|.+....+..+.++++|+.|++++|......+. ...+++|++|++++|.. +.++...+ ..+++|+
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~-~~l~~L~ 127 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWF-KPLSSLT 127 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHH-TTCTTCS
T ss_pred ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHh-CCCccCC
Confidence 346899999999988544444789999999999999854443332 45689999999998864 44554422 5678899
Q ss_pred eEecccCCCCcCCCC---CCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeE
Q 036119 542 CLAIRSCNSLVSFPE---VALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLK 618 (839)
Q Consensus 542 ~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~ 618 (839)
+|++++|... .++. +..+++|++|++++|..+..++...+... ++|+.|++++|......+.....+
T Consensus 128 ~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~l~~l------- 197 (353)
T 2z80_A 128 FLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL--TFLEELEIDASDLQSYEPKSLKSI------- 197 (353)
T ss_dssp EEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC--CEEEEEEEEETTCCEECTTTTTTC-------
T ss_pred EEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCC--CCCCEEECCCCCcCccCHHHHhcc-------
Confidence 9999887544 4443 45667778887777754554433222211 245555555543322222222222
Q ss_pred eccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCC---CCCCCCcceEecccccc
Q 036119 619 IEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEE---GLPSTKLTELTIYDCEN 695 (839)
Q Consensus 619 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~ 695 (839)
++|++|++++|.+....+..+..+++|++|++++|......+.. ....+.++.++++++..
T Consensus 198 ----------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 198 ----------------QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp ----------------SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred ----------------ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 45555555555543222222334677777777777655432221 12245667777777654
Q ss_pred cc----cccccCcccccccccccccccCCccCCCC--CCCCCcceEEecCCCCCCcc
Q 036119 696 LK----ALPNCMHNLTSLLNLKISECPSVVSFPED--GFPTNLQSLDVHDLKISKPL 746 (839)
Q Consensus 696 l~----~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~ 746 (839)
.+ .+|..+..+++|+.|++++|.+. .+|.. ..+++|++|++++|++.+..
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 33 46778888999999999999886 55543 57889999999999988654
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=4.6e-17 Score=167.51 Aligned_cols=201 Identities=18% Similarity=0.121 Sum_probs=106.8
Q ss_pred ccccceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCccc-CCCCCCCCCcceE
Q 036119 611 PQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESF-PEEGLPSTKLTEL 688 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L 688 (839)
+++|+.|++++|......+..+ ..++|++|++++|.+.+..|..+..+++|++|++++|.....+ +..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 3456666666554333222222 2356666666666665555556666666677777666533333 4555566666677
Q ss_pred ecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCC
Q 036119 689 TIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCP 767 (839)
Q Consensus 689 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 767 (839)
++++|...+..|..+..+++|++|++++|.+....+.. ..+++|++|++++|.+.+.. ...+..+++|+.|++++|..
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-HHHhcCccccCEEECCCCcc
Confidence 77666655544555666666666666666665433322 45666666666666655322 11233344444444444211
Q ss_pred CCcCC--CCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCC
Q 036119 768 DLVSP--PPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 768 ~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
.-... ..-+++|+.|++++|...+..+..+..+++|+.|++++|+
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 10000 0013456666666665544333345566666666666664
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=1e-18 Score=182.23 Aligned_cols=198 Identities=16% Similarity=0.088 Sum_probs=113.3
Q ss_pred CCCcceeeecccccccCccccc--cCCCCCCeEEecCCCCCcccCCCCCCC-----CCcceEecccccccccccccCccc
Q 036119 634 NTSLEEISISVLENLKSLPADL--HNLHHLQKIWIFGCPNLESFPEEGLPS-----TKLTELTIYDCENLKALPNCMHNL 706 (839)
Q Consensus 634 ~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~l~~lp~~l~~l 706 (839)
.++|++|++++|.+.+.+|..+ ..+++|++|++++|...+. |..+..+ ++|++|++++|+..+..|..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4566666666666655555544 5566666666666654443 4333333 566666666665544444556666
Q ss_pred ccccccccccccCCccC---CCC--CCCCCcceEEecCCCCCC--ccccccCCCccccceEEEecCCCCCcC-CC--CCC
Q 036119 707 TSLLNLKISECPSVVSF---PED--GFPTNLQSLDVHDLKISK--PLLEWGSNRFTSLRRFTIWGGCPDLVS-PP--PFP 776 (839)
Q Consensus 707 ~~L~~L~l~~~~~~~~~---~~~--~~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~--~~~ 776 (839)
++|++|++++|++.... +.. ..+++|++|++++|.+.+ .++...+..+++|+.|++++|...-.. .+ ..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 66666666666543321 111 345566666666666552 122222234556666666654222111 11 124
Q ss_pred cccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCCCCcccceeeecCCCC
Q 036119 777 ASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYACPL 836 (839)
Q Consensus 777 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~ 836 (839)
++|+.|++++|... .+|..+. ++|+.|++++| +++.+|...-.++|++|++++++.
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCTT
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCCC
Confidence 67888888888654 6776654 78888888887 677776544446788888888763
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=7.2e-17 Score=166.10 Aligned_cols=109 Identities=14% Similarity=0.056 Sum_probs=64.1
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKI 714 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 714 (839)
++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|...+..|..+..+++|+.|++
T Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 44555555555554444444566667777777766554333334556667777777776655555666666667777777
Q ss_pred ccccCCccCCC-CCCCCCcceEEecCCCCC
Q 036119 715 SECPSVVSFPE-DGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 715 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 743 (839)
++|.+....+. ...+++|++|++++|++.
T Consensus 209 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 209 FANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 76666543222 145566666777666654
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=2.7e-17 Score=171.88 Aligned_cols=208 Identities=9% Similarity=-0.044 Sum_probs=98.6
Q ss_pred CcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecC
Q 036119 589 TLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFG 668 (839)
Q Consensus 589 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 668 (839)
+|+.|++++|......+.....+++|+.|++++|......+ ....++|++|++++|.+.+. ...++|++|++++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~~ 108 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAAN 108 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECCS
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc-----cCCCCcCEEECCC
Confidence 56666666654333222112223456666666654332222 23335666666666654321 1235666666666
Q ss_pred CCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC--CCCCCcceEEecCCCCCCcc
Q 036119 669 CPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED--GFPTNLQSLDVHDLKISKPL 746 (839)
Q Consensus 669 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~ 746 (839)
|.+....+. .+++|++|++++|+..+..|..+..+++|+.|++++|.+....+.. ..+++|++|++++|.+.+.
T Consensus 109 n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~- 184 (317)
T 3o53_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (317)
T ss_dssp SCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-
Confidence 654433322 1345666666666554444445555666666666666554433322 2345666666666665532
Q ss_pred ccccCCCccccceEEEecCCCCCcCCCC---CCcccceeeecCCCCCCccccCCCCCCccCeeeccCC
Q 036119 747 LEWGSNRFTSLRRFTIWGGCPDLVSPPP---FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDC 811 (839)
Q Consensus 747 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 811 (839)
+. ...+++|+.|++++|.. ..++. .+++|+.|++++|... .+|..+..+++|+.|++++|
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l--~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 185 KG--QVVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp EC--CCCCTTCCEEECCSSCC--CEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred cc--ccccccCCEEECCCCcC--CcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCC
Confidence 11 12244555555544311 11111 1234555555555332 34444444455555555554
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=4.4e-18 Score=177.37 Aligned_cols=243 Identities=16% Similarity=0.128 Sum_probs=126.2
Q ss_pred CCccceEecccCCCCcCCCCCCCCCCccEEEEcCCCCC-cCCchhhh----cccCCCCcceEEEeecCCcccccCCC--C
Q 036119 537 NSSLECLAIRSCNSLVSFPEVALPSQLRTIIIGGCHAL-ESLPEAWM----HNELPATLEHLEVSYCSNLALLSRNG--N 609 (839)
Q Consensus 537 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~----~~~~~~~L~~L~l~~c~~l~~~~~~~--~ 609 (839)
.++|+.+++++|.. .+|.. .+..|+.|+++++..- ..++.... ...-.++|++|++++|......+... .
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQ-FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHH-HHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCCceeEeeccccc--ccHHH-HHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 36678888887766 44421 1123666666655321 12333221 00001366677776665444443321 3
Q ss_pred cccccceeEeccCCCchhhhhhcC------CCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcc--cCCC--C
Q 036119 610 LPQSLKYLKIEDCSKLESLAERLD------NTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLES--FPEE--G 679 (839)
Q Consensus 610 ~~~~L~~L~l~~~~~l~~~~~~~~------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~--~ 679 (839)
.+++|++|++++|..... +..+. .++|++|++++|++.+..|..+..+++|++|++++|...+. ++.. +
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 345566666666543322 21111 14555566655555555545555555566666655554332 1111 1
Q ss_pred CCCCCcceEecccccccc--ccc-ccCcccccccccccccccCCccCCC--CCCCCCcceEEecCCCCCCccccccCCCc
Q 036119 680 LPSTKLTELTIYDCENLK--ALP-NCMHNLTSLLNLKISECPSVVSFPE--DGFPTNLQSLDVHDLKISKPLLEWGSNRF 754 (839)
Q Consensus 680 ~~~~~L~~L~l~~~~~l~--~lp-~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 754 (839)
..+++|++|++++|.... .++ ..+..+++|++|++++|.+....|. ...+++|++|++++|.+.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~----------- 266 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK----------- 266 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-----------
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-----------
Confidence 445555555555554331 112 1223445555555555555443321 133455555555555544
Q ss_pred cccceEEEecCCCCCcCCCC-CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCC
Q 036119 755 TSLRRFTIWGGCPDLVSPPP-FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 755 ~~L~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
.+|. ++++|+.|++++|...+ +|. +..+++|+.|++++|+
T Consensus 267 ----------------~ip~~~~~~L~~L~Ls~N~l~~-~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 267 ----------------QVPKGLPAKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ----------------SCCSSCCSEEEEEECCSSCCCS-CCC-TTTSCEEEEEECTTCT
T ss_pred ----------------hhhhhccCCceEEECCCCCCCC-Chh-HhhCCCCCEEeccCCC
Confidence 2222 22589999999996654 465 8889999999999983
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=2.5e-16 Score=164.45 Aligned_cols=225 Identities=16% Similarity=0.164 Sum_probs=155.9
Q ss_pred HHHHHHHhcCCCceeEEEeCCCccccccc-ccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccc
Q 036119 283 WSVLQMLLNHLPRLRVFSLCGYRNIFNLP-NEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQ 361 (839)
Q Consensus 283 ~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~ 361 (839)
...+...+..+++|++|++++|. +..++ ..|+++++|++|++++|.+.+..| +.. +++|++|++++| .++
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~-----l~~L~~L~Ls~n-~l~ 93 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD--LES-----LSTLRTLDLNNN-YVQ 93 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETT-----CTTCCEEECCSS-EEE
T ss_pred hhhHHHHhccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhh-----cCCCCEEECcCC-ccc
Confidence 45566778888999999999999 66554 789999999999999999866544 444 999999999996 565
Q ss_pred cCCCcCCCCccEEeecccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceec
Q 036119 362 GTLPRRLLLLETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQI 441 (839)
Q Consensus 362 ~~lp~~l~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l 441 (839)
.+|. .++|++|++++|.--......+++|++|++++|....+..
T Consensus 94 -~l~~-~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~---------------------------------- 137 (317)
T 3o53_A 94 -ELLV-GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRD---------------------------------- 137 (317)
T ss_dssp -EEEE-CTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGG----------------------------------
T ss_pred -cccC-CCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccc----------------------------------
Confidence 4442 3777888877776222223346677777777765322100
Q ss_pred ccCCCcccccccccccCCCCCCcCCceEEEeccCCCCCcccccc-CCCCCccEEeecCCCCCcccCCCCCCCCccEEEec
Q 036119 442 SRCPQLISLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQAL-LTLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIE 520 (839)
Q Consensus 442 ~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~ 520 (839)
..+..+ ++|+.|++++|.+....+..+ ..+++|++|++++|. ++.++....+++|+.|+++
T Consensus 138 ----------------~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls 199 (317)
T 3o53_A 138 ----------------LDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLS 199 (317)
T ss_dssp ----------------BCTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECC
T ss_pred ----------------hhhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-CcccccccccccCCEEECC
Confidence 000011 578888998888865555555 478899999999885 4455555568889999998
Q ss_pred cCccccccchhhhhCCCCccceEecccCCCCcCCC-CCCCCCCccEEEEcCCCCC
Q 036119 521 ECDALESLPEAWMQNSNSSLECLAIRSCNSLVSFP-EVALPSQLRTIIIGGCHAL 574 (839)
Q Consensus 521 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l 574 (839)
+|.. ..++..+ ..+++|+.|++++|... .+| .+..+++|+.|++++|+..
T Consensus 200 ~N~l-~~l~~~~--~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 200 SNKL-AFMGPEF--QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SSCC-CEECGGG--GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred CCcC-Ccchhhh--cccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 8864 4455443 45688888888887554 344 3455667777777777543
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=3.3e-16 Score=156.41 Aligned_cols=200 Identities=17% Similarity=0.140 Sum_probs=104.9
Q ss_pred cccccceeEeccCCCchhhhhhc-CCCCcceeeecccc-cccCccccccCCCCCCeEEecC-CCCCcccCCCCCCCCCcc
Q 036119 610 LPQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLE-NLKSLPADLHNLHHLQKIWIFG-CPNLESFPEEGLPSTKLT 686 (839)
Q Consensus 610 ~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~ 686 (839)
++++|+.|++++|......+..+ ..++|++|++++|+ +....+..+..+++|++|++++ |......+..+..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 34456666666654322222122 23455555555554 3222223444555555555554 333322223344445555
Q ss_pred eEecccccccccccccCccccccc---ccccccccCCccCCCC--CCCCCcc-eEEecCCCCCCccccccCCCccccceE
Q 036119 687 ELTIYDCENLKALPNCMHNLTSLL---NLKISECPSVVSFPED--GFPTNLQ-SLDVHDLKISKPLLEWGSNRFTSLRRF 760 (839)
Q Consensus 687 ~L~l~~~~~l~~lp~~l~~l~~L~---~L~l~~~~~~~~~~~~--~~~~~L~-~L~l~~~~~~~~~~~~~~~~l~~L~~l 760 (839)
+|++++|+.. .+|. +..+++|+ .|++++|+.+..++.. ..+++|+ +|++++|.+.. ++...
T Consensus 109 ~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~---------- 175 (239)
T 2xwt_C 109 FLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYA---------- 175 (239)
T ss_dssp EEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTT----------
T ss_pred EEeCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhh----------
Confidence 5555555432 2443 44444444 5555555222222221 3344555 55555554431 21110
Q ss_pred EEecCCCCCcCCCCCCcccceeeecCCCCCCccc-cCCCCC-CccCeeeccCCCCccccCCCCCCcccceeeecCCCCC
Q 036119 761 TIWGGCPDLVSPPPFPASLTNLWISDMPDLESIS-SIGENL-TSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYACPLI 837 (839)
Q Consensus 761 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~l 837 (839)
+ ..++|+.|++++|+.++.+| ..+..+ ++|+.|++++| .++.+|...+ ++|+.|+++++..|
T Consensus 176 -----------~--~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~-~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 176 -----------F--NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGL-EHLKELIARNTWTL 239 (239)
T ss_dssp -----------T--TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTC-TTCSEEECTTC---
T ss_pred -----------c--CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHh-ccCceeeccCccCC
Confidence 0 11478999999996455554 456788 99999999997 7888887744 58999999998764
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=1.3e-16 Score=176.60 Aligned_cols=209 Identities=10% Similarity=-0.037 Sum_probs=123.6
Q ss_pred CcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecC
Q 036119 589 TLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFG 668 (839)
Q Consensus 589 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 668 (839)
+|+.|++++|......+.....+++|+.|++++|......+ ....++|+.|++++|.+.+.. ..++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcC
Confidence 67777777775444333333344677777777776443333 334477777777777664322 236777777777
Q ss_pred CCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC--CCCCCcceEEecCCCCCCcc
Q 036119 669 CPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED--GFPTNLQSLDVHDLKISKPL 746 (839)
Q Consensus 669 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~ 746 (839)
|.+....+. .+++|+.|++++|...+..|..+..+++|+.|++++|.+....|.. ..+++|++|++++|.+.+..
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 766544332 2457777777777766666666777777777777777776544443 24677777777777776542
Q ss_pred ccccCCCccccceEEEecCCCCCcCCCC---CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCC
Q 036119 747 LEWGSNRFTSLRRFTIWGGCPDLVSPPP---FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 747 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
. ...+++|+.|++++|.. ..++. .+++|+.|++++|... .+|..+..+++|+.|++++|+
T Consensus 186 -~--~~~l~~L~~L~Ls~N~l--~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 186 -G--QVVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp -C--CCCCTTCCEEECCSSCC--CEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred -c--cccCCCCCEEECCCCCC--CCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCC
Confidence 1 12356666666655421 12211 2345666666665433 355555555666666666553
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=6.1e-16 Score=171.14 Aligned_cols=217 Identities=16% Similarity=0.174 Sum_probs=154.8
Q ss_pred hcCCCceeEEEeCCCcccccc-cccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCcCC
Q 036119 290 LNHLPRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPRRL 368 (839)
Q Consensus 290 ~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~~l 368 (839)
...+++|++|+|++|. +..+ |..|+.+++|++|+|++|.+.+..| +.. +++|++|++++| .++ .+|. .
T Consensus 30 ~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~-----l~~L~~L~Ls~N-~l~-~l~~-~ 98 (487)
T 3oja_A 30 RQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD--LES-----LSTLRTLDLNNN-YVQ-ELLV-G 98 (487)
T ss_dssp STTGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTT-----CTTCCEEECCSS-EEE-EEEE-C
T ss_pred cccCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--ccc-----CCCCCEEEecCC-cCC-CCCC-C
Confidence 3445589999999999 5555 5789999999999999999977665 555 999999999996 666 4443 3
Q ss_pred CCccEEeecccCcccccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcc
Q 036119 369 LLLETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLI 448 (839)
Q Consensus 369 ~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 448 (839)
++|++|++++|.-.......+++|+.|++++|......+ .
T Consensus 99 ~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~-----------------------~----------------- 138 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRD-----------------------L----------------- 138 (487)
T ss_dssp TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGG-----------------------B-----------------
T ss_pred CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCc-----------------------h-----------------
Confidence 778888888776222222346777777777765322100 0
Q ss_pred cccccccccCCCCCCcCCceEEEeccCCCCCccccccC-CCCCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccc
Q 036119 449 SLVTVEEHDQQQPELPCRLQFLELSCCEGLTRLPQALL-TLSSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALES 527 (839)
Q Consensus 449 ~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~ 527 (839)
.+..+ ++|+.|++++|.+.+..|..+. .+++|+.|++++|. +..++....+++|+.|++++|.. ..
T Consensus 139 ----------~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~l-~~ 205 (487)
T 3oja_A 139 ----------DEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKL-AF 205 (487)
T ss_dssp ----------CGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCC-CE
T ss_pred ----------hhcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEECCCCCC-CC
Confidence 00001 5789999999988776777665 78999999999985 44556666789999999998874 44
Q ss_pred cchhhhhCCCCccceEecccCCCCcCCC-CCCCCCCccEEEEcCCCC
Q 036119 528 LPEAWMQNSNSSLECLAIRSCNSLVSFP-EVALPSQLRTIIIGGCHA 573 (839)
Q Consensus 528 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~ 573 (839)
++..+ ..+++|+.|++++|.... +| .+..+++|+.|++++|+.
T Consensus 206 ~~~~~--~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 206 MGPEF--QSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp ECGGG--GGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred CCHhH--cCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence 55444 456889999998876553 44 345667788888777754
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=2.4e-15 Score=153.10 Aligned_cols=174 Identities=15% Similarity=0.099 Sum_probs=83.7
Q ss_pred CcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccc
Q 036119 636 SLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKIS 715 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~ 715 (839)
+++.|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 34444444444433333344455555555555554332222223444555555555554333223334455555555555
Q ss_pred cccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCC----CCCcccceeeecCCCCC
Q 036119 716 ECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPP----PFPASLTNLWISDMPDL 790 (839)
Q Consensus 716 ~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~l 790 (839)
+|.+....+.. ..+++|++|++++|.+.+.. ...+..+++|+.|+++++. +..++ ..+++|+.|++++|...
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-KGVFDKLTSLKELRLYNNQ--LKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccC-HhHccCCcccceeEecCCc--CcEeChhHhccCCCcCEEECCCCcCC
Confidence 55544332222 34455555555555544321 1122334444444444321 11111 12346788888888665
Q ss_pred CccccCCCCCCccCeeeccCCC
Q 036119 791 ESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 791 ~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
+..+..+..+++|+.|++++||
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 195 RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCHHHhccccCCCEEEecCCC
Confidence 4444446778888888888875
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=163.90 Aligned_cols=196 Identities=17% Similarity=0.126 Sum_probs=98.1
Q ss_pred cceeEeccCCCchhhhhhc---CCCCcceeeecccccccCcc----ccccCCCCCCeEEecCCCCCcccCCCCCCCCCcc
Q 036119 614 LKYLKIEDCSKLESLAERL---DNTSLEEISISVLENLKSLP----ADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLT 686 (839)
Q Consensus 614 L~~L~l~~~~~l~~~~~~~---~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 686 (839)
|++|++++|......+..+ ..++|++|++++|.+.+..+ ..+..+++|++|++++|......+..+..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 5555555554333333321 23445555555554443322 1223444555555555544433334444445555
Q ss_pred eEeccccccccc--c--cccCcccccccccccccccCCccCCC-----CCCCCCcceEEecCCCCCCccccccCCCcccc
Q 036119 687 ELTIYDCENLKA--L--PNCMHNLTSLLNLKISECPSVVSFPE-----DGFPTNLQSLDVHDLKISKPLLEWGSNRFTSL 757 (839)
Q Consensus 687 ~L~l~~~~~l~~--l--p~~l~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 757 (839)
+|++++|+..+. + +..+..+++|++|++++|.+. .++. ...+++|++|++++|.+.+..|..
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-------- 243 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-------- 243 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC--------
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhh--------
Confidence 555555543321 1 112234455555555555442 1111 012344555555555444332211
Q ss_pred ceEEEecCCCCCcCCCC--CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCCCCCCcccceeeecCCC
Q 036119 758 RRFTIWGGCPDLVSPPP--FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGLPKSLLQLHIYACP 835 (839)
Q Consensus 758 ~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~ 835 (839)
+.. .+++|+.|++++|... .+|..+. ++|+.|++++| +++.+|...-.++|+.|++++++
T Consensus 244 --------------~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 244 --------------APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp --------------CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred --------------HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 111 1357888888888655 6676553 78888888887 67776554444688888888876
Q ss_pred C
Q 036119 836 L 836 (839)
Q Consensus 836 ~ 836 (839)
.
T Consensus 306 l 306 (310)
T 4glp_A 306 F 306 (310)
T ss_dssp T
T ss_pred C
Confidence 4
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=9.7e-16 Score=156.79 Aligned_cols=199 Identities=18% Similarity=0.098 Sum_probs=105.6
Q ss_pred ccccceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEe
Q 036119 611 PQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELT 689 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 689 (839)
+++|++|++++|......+..+ ..++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 3455566665554332222122 235566666666655544444555666666666666655544445555566666666
Q ss_pred cccccccccccccCcccccccccccccccCCcc-CCCC-CCCCCcceEEecCCCCCCccccccCCCccccc----eEEEe
Q 036119 690 IYDCENLKALPNCMHNLTSLLNLKISECPSVVS-FPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLR----RFTIW 763 (839)
Q Consensus 690 l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~-~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~----~l~l~ 763 (839)
+++|...+..+..+..+++|++|++++|.+... +|.. ..+++|++|++++|.+.+..+. .+..+++|+ .++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-GGHHHHTCTTCCEEEECC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH-HhhhhhhccccceeeecC
Confidence 666654443333556666666666666655431 2322 4456666666666665543221 122233333 44554
Q ss_pred cCCCCCcCCCC---CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCC
Q 036119 764 GGCPDLVSPPP---FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 764 ~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
++... .++. ...+|+.|++++|...+..+..+..+++|+.|++++|+
T Consensus 186 ~n~l~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 186 LNPMN--FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp SSCCC--EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCccc--ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 43211 1111 12267888888886554444445778888888888764
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=2.5e-15 Score=153.72 Aligned_cols=196 Identities=18% Similarity=0.048 Sum_probs=155.0
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKI 714 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 714 (839)
+++++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|+..+..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999999998777778889999999999999877666667888999999999999877766778999999999999
Q ss_pred ccccCCccCCC-CCCCCCcceEEecCCCCCCc-cccccCCCccccceEEEecCCCCCcCCCC----CCcccc----eeee
Q 036119 715 SECPSVVSFPE-DGFPTNLQSLDVHDLKISKP-LLEWGSNRFTSLRRFTIWGGCPDLVSPPP----FPASLT----NLWI 784 (839)
Q Consensus 715 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~----~~~~L~----~L~l 784 (839)
++|.+....+. ...+++|++|++++|.+.+. ++. .+..+++|+.|++++|.. ..++. .+.+|+ .|++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKI--QSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCC--CEECGGGGHHHHTCTTCCEEEEC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCC--CcCCHHHhhhhhhccccceeeec
Confidence 99998765442 36789999999999999863 233 457789999999998632 22221 123444 8999
Q ss_pred cCCCCCCccccCCCCCCccCeeeccCCCCccccCCCCC--CcccceeeecCCC
Q 036119 785 SDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSEQGL--PKSLLQLHIYACP 835 (839)
Q Consensus 785 ~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~sL~~L~i~~c~ 835 (839)
++|.... ++.......+|+.|++++| +++.++...+ .++|+.|++++++
T Consensus 185 s~n~l~~-~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 185 SLNPMNF-IQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CSSCCCE-ECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCCcccc-cCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 9997654 4444445568999999998 6888887533 4689999999654
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=5.9e-15 Score=151.40 Aligned_cols=171 Identities=15% Similarity=-0.002 Sum_probs=86.3
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKI 714 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 714 (839)
++++.|++++|.+.+..+..+..+++|++|++++|.+.. ++.. ..+++|++|++++|. +..+|..+..+++|+.|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEEC
Confidence 345555555555544444455556666666666654432 2221 445556666666553 3345555555666666666
Q ss_pred ccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCC----CCcccceeeecCCCC
Q 036119 715 SECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP----FPASLTNLWISDMPD 789 (839)
Q Consensus 715 ~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~ 789 (839)
++|.+....+.. ..+++|++|++++|.+.+.. ...+..+++|+.|++++|. +..++. .+++|+.|++++|..
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNN--LTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC--CSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCCc--CCccCHHHhcCcCCCCEEECCCCcC
Confidence 665554333222 44555666666666555322 1122333333333333321 111111 134566666666644
Q ss_pred CCccccCCCCCCccCeeeccCCC
Q 036119 790 LESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 790 l~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
+.+|..+..+++|+.|++++||
T Consensus 185 -~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 185 -YTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp -CCCCTTTTTTCCCSEEECCSCC
T ss_pred -CccChhhcccccCCeEEeCCCC
Confidence 3566666666677777777664
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=4.4e-15 Score=148.19 Aligned_cols=209 Identities=18% Similarity=0.149 Sum_probs=152.7
Q ss_pred CCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhh-hc-CCCCcceeeecc-ccc
Q 036119 571 CHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAE-RL-DNTSLEEISISV-LEN 647 (839)
Q Consensus 571 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~-~~~~L~~L~l~~-~~~ 647 (839)
|..++.+|. +|++++.|+++++......+.....+++|+.|++++|..++.++. .+ ..++|++|++++ |.+
T Consensus 20 c~~l~~ip~------~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l 93 (239)
T 2xwt_C 20 CKDIQRIPS------LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93 (239)
T ss_dssp ECSCSSCCC------CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC
T ss_pred ccCccccCC------CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe
Confidence 444677775 345899999999875443332344467899999999975666653 33 458999999999 787
Q ss_pred ccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcc---eEeccccccccccc-ccCccccccc-ccccccccCCcc
Q 036119 648 LKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLT---ELTIYDCENLKALP-NCMHNLTSLL-NLKISECPSVVS 722 (839)
Q Consensus 648 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~~~l~~lp-~~l~~l~~L~-~L~l~~~~~~~~ 722 (839)
.+..+..+..+++|++|++++|.... +|. +..+++|+ +|++++|+.+..+| ..+..+++|+ .|++++|.+. .
T Consensus 94 ~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~ 170 (239)
T 2xwt_C 94 TYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-S 170 (239)
T ss_dssp CEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-E
T ss_pred eEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-c
Confidence 76666778899999999999997654 776 77788888 99999994455555 4589999999 9999999987 5
Q ss_pred CCCC-CCCCCcceEEecCCC-CCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccCCCCC
Q 036119 723 FPED-GFPTNLQSLDVHDLK-ISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENL 800 (839)
Q Consensus 723 ~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l 800 (839)
+|.. ...++|+.|++++|+ +.+ ++...+..+ .++|+.|++++|... .+|.. .+
T Consensus 171 i~~~~~~~~~L~~L~L~~n~~l~~-i~~~~~~~l---------------------~~~L~~L~l~~N~l~-~l~~~--~~ 225 (239)
T 2xwt_C 171 VQGYAFNGTKLDAVYLNKNKYLTV-IDKDAFGGV---------------------YSGPSLLDVSQTSVT-ALPSK--GL 225 (239)
T ss_dssp ECTTTTTTCEEEEEECTTCTTCCE-ECTTTTTTC---------------------SBCCSEEECTTCCCC-CCCCT--TC
T ss_pred cCHhhcCCCCCCEEEcCCCCCccc-CCHHHhhcc---------------------ccCCcEEECCCCccc-cCChh--Hh
Confidence 5543 344799999999996 654 322222222 136788888888654 55543 68
Q ss_pred CccCeeeccCCCC
Q 036119 801 TSLKTLRLSDCPK 813 (839)
Q Consensus 801 ~~L~~L~l~~c~~ 813 (839)
++|+.|+++++..
T Consensus 226 ~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 226 EHLKELIARNTWT 238 (239)
T ss_dssp TTCSEEECTTC--
T ss_pred ccCceeeccCccC
Confidence 8999999998754
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=3.8e-15 Score=151.67 Aligned_cols=184 Identities=13% Similarity=-0.021 Sum_probs=122.6
Q ss_pred cccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecc
Q 036119 612 QSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIY 691 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 691 (839)
++|+.|++++|... .++.....++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 63 ~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 63 PNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp TTCCEEECTTSCCC-CCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCcEEECCCCCCC-CchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence 45666666666432 23433445778888888887776666667778888888888887665555556777888888888
Q ss_pred cccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCc
Q 036119 692 DCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLV 770 (839)
Q Consensus 692 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 770 (839)
+|...+..+..+..+++|+.|++++|.+....+.. ..+++|++|++++|++.+..+ ..+..+++|+.+++++|.
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~---- 216 (272)
T 3rfs_A 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNP---- 216 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSC----
T ss_pred CCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCCC----
Confidence 88655444445677888888888888776444433 567788888888888776443 234566777777776641
Q ss_pred CCCCCCcccceeeecCCCCCCccccCCCCCCc
Q 036119 771 SPPPFPASLTNLWISDMPDLESISSIGENLTS 802 (839)
Q Consensus 771 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~ 802 (839)
+...+++|+.|+++.|...+.+|..++.++.
T Consensus 217 -~~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 217 -WDCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -BCCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -ccccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 1112346777777777777777766655544
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=1.8e-14 Score=146.65 Aligned_cols=176 Identities=17% Similarity=0.089 Sum_probs=77.0
Q ss_pred CccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhc-CCCCccee
Q 036119 562 QLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERL-DNTSLEEI 640 (839)
Q Consensus 562 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L 640 (839)
+.+.++++++ .+..+|.. +|++++.|+++++......+.....+++|++|++++|......+..+ ..++|++|
T Consensus 17 ~~~~l~~~~~-~l~~ip~~-----~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPSN-----IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTEEECTTS-CCSSCCSC-----CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCCEEEccCC-CCCccCCC-----CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 4556666655 34445432 23456666666554322222122223455555555543221111111 12455555
Q ss_pred eecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCC
Q 036119 641 SISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSV 720 (839)
Q Consensus 641 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 720 (839)
++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.+.
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 55555544433333444555555555555444333333444455555555554333222222444555555555555443
Q ss_pred ccCCCC-CCCCCcceEEecCCCCC
Q 036119 721 VSFPED-GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 721 ~~~~~~-~~~~~L~~L~l~~~~~~ 743 (839)
...+.. ..+++|++|++++|++.
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred EeChhHhccCCCcCEEECCCCcCC
Confidence 322221 33445555555555444
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=4e-15 Score=154.88 Aligned_cols=195 Identities=13% Similarity=0.090 Sum_probs=143.6
Q ss_pred CcceEEEeecCCcccccCCC--CcccccceeEeccCCCchhhh-----hhcCCCCcceeeecccccccCccccccCCCCC
Q 036119 589 TLEHLEVSYCSNLALLSRNG--NLPQSLKYLKIEDCSKLESLA-----ERLDNTSLEEISISVLENLKSLPADLHNLHHL 661 (839)
Q Consensus 589 ~L~~L~l~~c~~l~~~~~~~--~~~~~L~~L~l~~~~~l~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 661 (839)
+|++|++++|......+... ..+++|++|++++|......+ .....++|++|++++|.+.+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 57777777776554444432 345678889988887554321 11245899999999999988888889999999
Q ss_pred CeEEecCCCCCcc--c--CCCCCCCCCcceEecccccccccccc----cCcccccccccccccccCCccCCCC-CC---C
Q 036119 662 QKIWIFGCPNLES--F--PEEGLPSTKLTELTIYDCENLKALPN----CMHNLTSLLNLKISECPSVVSFPED-GF---P 729 (839)
Q Consensus 662 ~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~l~~lp~----~l~~l~~L~~L~l~~~~~~~~~~~~-~~---~ 729 (839)
++|++++|+..+. + +.....+++|++|++++|.. ..++. .+..+++|++|++++|.+....|.. .. +
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 9999999986642 2 23346789999999999965 44443 2477899999999999998775543 23 4
Q ss_pred CCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccccCCCCCCccCeeecc
Q 036119 730 TNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLS 809 (839)
Q Consensus 730 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 809 (839)
++|++|++++|.+.. +|.. ++++|+.|++++|... .+|. +..+++|+.|+++
T Consensus 251 ~~L~~L~Ls~N~l~~-lp~~-------------------------~~~~L~~L~Ls~N~l~-~~~~-~~~l~~L~~L~L~ 302 (310)
T 4glp_A 251 SALNSLNLSFAGLEQ-VPKG-------------------------LPAKLRVLDLSSNRLN-RAPQ-PDELPEVDNLTLD 302 (310)
T ss_dssp TTCCCEECCSSCCCS-CCSC-------------------------CCSCCSCEECCSCCCC-SCCC-TTSCCCCSCEECS
T ss_pred CcCCEEECCCCCCCc-hhhh-------------------------hcCCCCEEECCCCcCC-CCch-hhhCCCccEEECc
Confidence 799999999999873 3321 1247889999999665 4443 5778999999999
Q ss_pred CCC
Q 036119 810 DCP 812 (839)
Q Consensus 810 ~c~ 812 (839)
+|+
T Consensus 303 ~N~ 305 (310)
T 4glp_A 303 GNP 305 (310)
T ss_dssp STT
T ss_pred CCC
Confidence 984
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=4.1e-14 Score=144.00 Aligned_cols=194 Identities=15% Similarity=0.089 Sum_probs=132.5
Q ss_pred cccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecc
Q 036119 612 QSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIY 691 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 691 (839)
++|+.|.+.+|. +..++.....++|++|++++|.+.+ + ..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 41 ~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 41 NSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cceeeeeeCCCC-cccccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 467788877764 3344444456899999999998865 3 367889999999999997776555567788999999999
Q ss_pred cccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCc
Q 036119 692 DCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLV 770 (839)
Q Consensus 692 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 770 (839)
+|...+..+..+..+++|++|++++|.+....+.. ..+++|++|++++|.+.+..+ ..+..+++|+.|++++|. +.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~--l~ 194 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQ--LK 194 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC--CS
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCc--CC
Confidence 99776655666888999999999999876544443 578899999999998875433 234556666666666542 11
Q ss_pred CCCC----CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccC
Q 036119 771 SPPP----FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFS 818 (839)
Q Consensus 771 ~~~~----~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 818 (839)
.++. .+++|+.|++++|+.. +.+++|+.|+++.|..-..+|
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBB
T ss_pred ccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCccc
Confidence 2211 2445666666666433 234456666666553333333
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=6.1e-14 Score=143.81 Aligned_cols=197 Identities=16% Similarity=0.042 Sum_probs=89.1
Q ss_pred CCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcc
Q 036119 559 LPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLE 638 (839)
Q Consensus 559 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~ 638 (839)
.+++++.+++.++ .+..+|... |++++.|++++|......+.....+++|+.|++++
T Consensus 8 ~l~~l~~l~~~~~-~l~~ip~~~-----~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~----------------- 64 (290)
T 1p9a_G 8 KVASHLEVNCDKR-NLTALPPDL-----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR----------------- 64 (290)
T ss_dssp CSTTCCEEECTTS-CCSSCCSCC-----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-----------------
T ss_pred ccCCccEEECCCC-CCCcCCCCC-----CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-----------------
Confidence 3446777777665 345554322 23455555555543222222122234455555554
Q ss_pred eeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccccccc
Q 036119 639 EISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECP 718 (839)
Q Consensus 639 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 718 (839)
|.+.+..+ ...+++|++|++++|.+. .+|..+..+++|++|++++|+..+..|..+..+++|++|++++|.
T Consensus 65 ------n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 65 ------AELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp ------SCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred ------CccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 44432211 134445555555554332 344444444455555555544333223344445555555555554
Q ss_pred CCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCC---CCcccceeeecCCCCC
Q 036119 719 SVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP---FPASLTNLWISDMPDL 790 (839)
Q Consensus 719 ~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l 790 (839)
+....+.. ..+++|+.|++++|++.+ ++...+..+++|+.|++++|. +..+|. -..+|+.|++++|+..
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~--l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENS--LYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCc--CCccChhhcccccCCeEEeCCCCcc
Confidence 43222221 234455555555554443 222223444555555554432 122222 1236888888888753
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=5.3e-14 Score=141.33 Aligned_cols=110 Identities=13% Similarity=-0.028 Sum_probs=57.4
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKI 714 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 714 (839)
++++.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 34555555555555444445555556666666655554444444455555666666555544333344555555666666
Q ss_pred ccccCCccCCCC-CCCCCcceEEecCCCCCC
Q 036119 715 SECPSVVSFPED-GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 715 ~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 744 (839)
++|.+....+.. ..+++|++|++++|.+.+
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 655554322222 345556666666555543
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=2.4e-14 Score=148.51 Aligned_cols=193 Identities=13% Similarity=0.074 Sum_probs=149.2
Q ss_pred ccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEec
Q 036119 611 PQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTI 690 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 690 (839)
+++|+.|++.+|. +..++.....++|+.|++++|.+.+..+ +..+++|++|++++|.... ++ .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 3579999999985 3445555556999999999998866443 8899999999999997553 44 5777899999999
Q ss_pred ccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCc
Q 036119 691 YDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLV 770 (839)
Q Consensus 691 ~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 770 (839)
++|.... ++. +..+++|++|++++|.+.. ++....+++|++|++++|.+.+..+ +..+++|+.|++++|.. .
T Consensus 115 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l--~ 186 (308)
T 1h6u_A 115 TSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKI--S 186 (308)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC--C
T ss_pred CCCCCCC-chh-hcCCCCCCEEECCCCccCc-CccccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCcc--C
Confidence 9997544 554 8999999999999998864 4445678999999999999886433 57889999999988532 2
Q ss_pred CCCC--CCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCC
Q 036119 771 SPPP--FPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSE 819 (839)
Q Consensus 771 ~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 819 (839)
.++. .+++|+.|++++|..... + .+..+++|+.|++++| .++..|.
T Consensus 187 ~~~~l~~l~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 187 DISPLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp CCGGGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEEE-EEECCCE
T ss_pred cChhhcCCCCCCEEEccCCccCcc-c-cccCCCCCCEEEccCC-eeecCCe
Confidence 3322 456899999999976544 3 2678999999999998 5566543
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=2.6e-14 Score=148.19 Aligned_cols=190 Identities=15% Similarity=0.077 Sum_probs=145.5
Q ss_pred CCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEec
Q 036119 588 ATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIF 667 (839)
Q Consensus 588 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 667 (839)
++|+.|++.+|. +..++. ...+++|+.|++++|.. ..++.....++|+.|++++|.+.+ ++ .+..+++|++|+++
T Consensus 41 ~~L~~L~l~~~~-i~~l~~-~~~l~~L~~L~L~~n~i-~~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 41 DGITTLSAFGTG-VTTIEG-VQYLNNLIGLELKDNQI-TDLAPLKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSCC-CCCGGGTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECT
T ss_pred CCcCEEEeeCCC-ccCchh-hhccCCCCEEEccCCcC-CCChhHccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECC
Confidence 379999999885 444443 33457899999999854 344445556899999999999765 34 68899999999999
Q ss_pred CCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccc
Q 036119 668 GCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLL 747 (839)
Q Consensus 668 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 747 (839)
+|.... ++. +..+++|++|++++|.... ++. +..+++|+.|++++|.+.. ++....+++|++|++++|.+.+..+
T Consensus 116 ~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 116 STQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTPLANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp TSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-ChhhcCCCCCCEEECCCCccCcChh
Confidence 997654 443 7788999999999996544 544 8899999999999998764 4446678999999999999986443
Q ss_pred cccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCC
Q 036119 748 EWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDL 790 (839)
Q Consensus 748 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l 790 (839)
+..+++|+.|++++|...-......+++|+.|++++|+..
T Consensus 191 ---l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 191 ---LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp ---GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred ---hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence 5788999999999864332211224678999999999763
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=1.3e-13 Score=145.85 Aligned_cols=156 Identities=19% Similarity=0.136 Sum_probs=101.6
Q ss_pred ccCCCCCCccEEEeccccceeecCCCccceeeecccccccccccccCCCCCCCCceecccCCCcccccccccccCCCCCC
Q 036119 384 VTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNWLQISRCPQLISLVTVEEHDQQQPEL 463 (839)
Q Consensus 384 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~l~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l 463 (839)
..+..+++|++|++++|....++.... .....+..+++.++..+..+.. ..+..+
T Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~--------------------~~~~~l~~l~l~~~~~i~~l~~-----~~f~~~ 152 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGIKHLPDVHK--------------------IHSLQKVLLDIQDNINIHTIER-----NSFVGL 152 (350)
T ss_dssp TSBCCCTTCCEEEEEEECCSSCCCCTT--------------------CCBSSCEEEEEESCTTCCEECT-----TSSTTS
T ss_pred hhhhhccccccccccccccccCCchhh--------------------cccchhhhhhhccccccccccc-----cchhhc
Confidence 456777888888888776443322211 1122233344443333333222 122233
Q ss_pred cCCceEEEeccCCCCCccccccCCCCCccEEeecCCCCCcccCCC--CCCCCccEEEeccCccccccchhhhhCCCCccc
Q 036119 464 PCRLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLVSFPQA--ALPSQLRSVVIEECDALESLPEAWMQNSNSSLE 541 (839)
Q Consensus 464 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 541 (839)
+..++.|++++|.+ ..++.......+|+.+.+.+++.++.+|.. ..+++|+.|++++|. ++.+|. ..+.+|+
T Consensus 153 ~~~l~~L~L~~N~i-~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~----~~~~~L~ 226 (350)
T 4ay9_X 153 SFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS----YGLENLK 226 (350)
T ss_dssp BSSCEEEECCSSCC-CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS----SSCTTCC
T ss_pred chhhhhhccccccc-cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh----hhhccch
Confidence 35788889988887 567666667778899999887788888763 457888888888885 566654 3457788
Q ss_pred eEecccCCCCcCCCCCCCCCCccEEEEcC
Q 036119 542 CLAIRSCNSLVSFPEVALPSQLRTIIIGG 570 (839)
Q Consensus 542 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 570 (839)
.|.+.++..++.+|....+++|+.+++.+
T Consensus 227 ~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 227 KLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp EEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred HhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 88888888888888777777888887754
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=1.5e-13 Score=138.07 Aligned_cols=171 Identities=17% Similarity=0.030 Sum_probs=123.7
Q ss_pred CcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccc
Q 036119 636 SLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKIS 715 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~ 715 (839)
+.+.++++++.+. .+|..+. ++++.|++++|......+..+..+++|++|++++|...+..|..+..+++|+.|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3455666665553 4555543 689999999998887777778889999999999998777667778999999999999
Q ss_pred cccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCC----CCcccceeeecCCCCC
Q 036119 716 ECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP----FPASLTNLWISDMPDL 790 (839)
Q Consensus 716 ~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~l 790 (839)
+|.+....+.. ..+++|++|++++|.+.+..+ ..+..+++|+.|++++|. +..++. .+++|+.|++++|...
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQ--LQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcCCc--CCccCHHHcCcCcCCCEEECCCCcCC
Confidence 99987554443 678999999999999885433 234567777777777642 223222 2456777777777665
Q ss_pred CccccCCCCCCccCeeeccCCC
Q 036119 791 ESISSIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 791 ~~~~~~~~~l~~L~~L~l~~c~ 812 (839)
...+..+..+++|+.|++++|+
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCC
T ss_pred ccCHHHHhCCCCCCEEEeeCCc
Confidence 5545456667777777777763
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=3.9e-15 Score=157.33 Aligned_cols=247 Identities=13% Similarity=0.119 Sum_probs=141.6
Q ss_pred CceEEEeccCCCCCccccccCCC--CCccEEeecCCCCCcccCCCCCCCCccEEEeccCccccc-cchhhhhCCCCccce
Q 036119 466 RLQFLELSCCEGLTRLPQALLTL--SSLTEMRIHDCASLVSFPQAALPSQLRSVVIEECDALES-LPEAWMQNSNSSLEC 542 (839)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~L~~ 542 (839)
.++.++++++.+. +..+..+ ++++.|++.+|......+....+++|++|++++|..... ++..+ ..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~--~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL--SQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH--TTBCCCSE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH--hhCCCCCE
Confidence 4677777776553 3445555 778888888776555555555678888888888763322 33332 55678888
Q ss_pred EecccCCCCcCCC-CCCCCCCccEEEEcCCCCCcC--CchhhhcccCCCCcceEEEeecCCcccccCCCCcccccceeEe
Q 036119 543 LAIRSCNSLVSFP-EVALPSQLRTIIIGGCHALES--LPEAWMHNELPATLEHLEVSYCSNLALLSRNGNLPQSLKYLKI 619 (839)
Q Consensus 543 L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l 619 (839)
|++++|......+ .+..+++|++|++++|..+.. ++.... .+++|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~---------------------------~~~~L~~L~l 175 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS---------------------------SCSRLDELNL 175 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH---------------------------HCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh---------------------------cCCCCCEEcC
Confidence 8888775432222 223456777777777643332 221111 1234555555
Q ss_pred ccCCCchh--hhhh-cCCC-Ccceeeecccc--cc-cCccccccCCCCCCeEEecCCC-CCcccCCCCCCCCCcceEecc
Q 036119 620 EDCSKLES--LAER-LDNT-SLEEISISVLE--NL-KSLPADLHNLHHLQKIWIFGCP-NLESFPEEGLPSTKLTELTIY 691 (839)
Q Consensus 620 ~~~~~l~~--~~~~-~~~~-~L~~L~l~~~~--~~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~ 691 (839)
++|..+.. ++.. ...+ +|++|++++|. +. +.+|..+..+++|++|++++|. .....+..+..+++|++|+++
T Consensus 176 ~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred CCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence 55522221 2221 1234 66666666663 32 3345555667778888887776 334455556667778888887
Q ss_pred cccccc-cccccCcccccccccccccccCCccCCCC--CCC-CCcceEEecCCCCCCccccc
Q 036119 692 DCENLK-ALPNCMHNLTSLLNLKISECPSVVSFPED--GFP-TNLQSLDVHDLKISKPLLEW 749 (839)
Q Consensus 692 ~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~-~~L~~L~l~~~~~~~~~~~~ 749 (839)
+|.... .....+.++++|+.|++++| ++.. ..+ .+++.|++++|.+++..+.+
T Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 256 RCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred CCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccCccccCCc
Confidence 775221 11124667778888888877 2221 111 34667777888777665544
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=9.6e-16 Score=162.02 Aligned_cols=240 Identities=16% Similarity=0.133 Sum_probs=161.1
Q ss_pred CCcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccC-ccccccCCCCCCeEEe
Q 036119 588 ATLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKS-LPADLHNLHHLQKIWI 666 (839)
Q Consensus 588 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l 666 (839)
..++.++++++........ ....++++.|++.++......+.....++|++|++++|.+.+. ++..+..+++|++|++
T Consensus 47 ~~~~~l~l~~~~~~~~~~~-~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 47 SLWQTLDLTGKNLHPDVTG-RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TTSSEEECTTCBCCHHHHH-HHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hhheeeccccccCCHHHHH-hhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4577888876543211100 0112578899988886555555555668999999999987655 7777888999999999
Q ss_pred cCCCCCcccCCCCCCCCCcceEecccccccc--cccccCcccccccccccccc-cCCcc-CCC-CCCCC-CcceEEecCC
Q 036119 667 FGCPNLESFPEEGLPSTKLTELTIYDCENLK--ALPNCMHNLTSLLNLKISEC-PSVVS-FPE-DGFPT-NLQSLDVHDL 740 (839)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~L~l~~~-~~~~~-~~~-~~~~~-~L~~L~l~~~ 740 (839)
++|......+..+..+++|++|++++|..++ .++..+.++++|++|++++| .+... ++. ...++ +|++|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 9997766666667778899999999995444 36777888999999999999 55432 222 14567 9999999999
Q ss_pred C--CC-CccccccCCCccccceEEEecCC-CCCcCCCC--CCcccceeeecCCCCCC-ccccCCCCCCccCeeeccCCCC
Q 036119 741 K--IS-KPLLEWGSNRFTSLRRFTIWGGC-PDLVSPPP--FPASLTNLWISDMPDLE-SISSIGENLTSLKTLRLSDCPK 813 (839)
Q Consensus 741 ~--~~-~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~--~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~ 813 (839)
. +. +.++. ....+++|+.|+++++. .....+.. ..++|+.|++++|.... .....+..+++|+.|++++|
T Consensus 206 ~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-- 282 (336)
T 2ast_B 206 RKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-- 282 (336)
T ss_dssp GGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--
T ss_pred cccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--
Confidence 4 44 22222 23567889999998753 11111111 34689999999886222 11124567889999999988
Q ss_pred ccccCCCC---CCcccceeeecCC
Q 036119 814 LKYFSEQG---LPKSLLQLHIYAC 834 (839)
Q Consensus 814 l~~l~~~~---~~~sL~~L~i~~c 834 (839)
++..+ +..+++.|++++|
T Consensus 283 ---i~~~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 283 ---VPDGTLQLLKEALPHLQINCS 303 (336)
T ss_dssp ---SCTTCHHHHHHHSTTSEESCC
T ss_pred ---cCHHHHHHHHhhCcceEEecc
Confidence 33332 2345777777554
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.51 E-value=4e-13 Score=142.25 Aligned_cols=228 Identities=17% Similarity=0.138 Sum_probs=111.9
Q ss_pred CCcCCCCCCCCCCccEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCC-CCcccccceeEeccCCCchhh
Q 036119 550 SLVSFPEVALPSQLRTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRN-GNLPQSLKYLKIEDCSKLESL 628 (839)
Q Consensus 550 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~~ 628 (839)
.++.+|.. .++++++|+++++ .++.++...+... ++|++|++++|...+.++.. +..++++.++...++..+..+
T Consensus 20 ~Lt~iP~~-l~~~l~~L~Ls~N-~i~~i~~~~f~~l--~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 20 KVTEIPSD-LPRNAIELRFVLT-KLRVIQKGAFSGF--GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp TCCSCCTT-CCTTCSEEEEESC-CCSEECTTSSTTC--TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CCCccCcC-cCCCCCEEEccCC-cCCCcCHHHHcCC--CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 45566642 3457788888776 3566665544332 35666666666555444321 112233444333333333333
Q ss_pred -hhhcC-CCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCC-CCCCC-CCcceEecccccccccccccCc
Q 036119 629 -AERLD-NTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPE-EGLPS-TKLTELTIYDCENLKALPNCMH 704 (839)
Q Consensus 629 -~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~-~~L~~L~l~~~~~l~~lp~~l~ 704 (839)
+..+. .++|++|++++|++....+..+....++..|++.++..+..++. .+..+ ..++.|++++|. +..+|....
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f 174 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAF 174 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSS
T ss_pred CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhc
Confidence 22222 25555555555555443333333444455555554444434333 12222 245555555553 233444444
Q ss_pred ccccccccccccccCCccCCCC--CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCC-CCcccce
Q 036119 705 NLTSLLNLKISECPSVVSFPED--GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPP-FPASLTN 781 (839)
Q Consensus 705 ~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~L~~ 781 (839)
..++|+++++.+|..++.+|.. ..+++|++|++++|++.. +|. .+.+|+.
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~---------------------------lp~~~~~~L~~ 227 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS---------------------------LPSYGLENLKK 227 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC---------------------------CCSSSCTTCCE
T ss_pred cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc---------------------------cChhhhccchH
Confidence 4455555555544444444432 344555555555555443 222 2345666
Q ss_pred eeecCCCCCCccccCCCCCCccCeeeccC
Q 036119 782 LWISDMPDLESISSIGENLTSLKTLRLSD 810 (839)
Q Consensus 782 L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 810 (839)
|.+.++..++.+| .+.++++|+.+++++
T Consensus 228 L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 228 LRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp EECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred hhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 6666666666666 355666666666654
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=1.1e-15 Score=164.67 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=45.6
Q ss_pred CCcceeeecccccc----cCccccccCCCCCCeEEecCCCCCcc----cCCCC--CCCCCcceEecccccccc----ccc
Q 036119 635 TSLEEISISVLENL----KSLPADLHNLHHLQKIWIFGCPNLES----FPEEG--LPSTKLTELTIYDCENLK----ALP 700 (839)
Q Consensus 635 ~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~--~~~~~L~~L~l~~~~~l~----~lp 700 (839)
++|+.|++++|.+. ..+|..+..+++|++|++++|.+... ++..+ ..+++|++|++++|.... .+|
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 33444444444432 33444555666666666666655433 23322 225566666666665444 355
Q ss_pred ccC-cccccccccccccccCCc
Q 036119 701 NCM-HNLTSLLNLKISECPSVV 721 (839)
Q Consensus 701 ~~l-~~l~~L~~L~l~~~~~~~ 721 (839)
..+ .++++|+.|++++|++..
T Consensus 296 ~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHhcCCCceEEEccCCcCCc
Confidence 554 445666666666666543
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=6.8e-13 Score=147.66 Aligned_cols=178 Identities=21% Similarity=0.198 Sum_probs=138.9
Q ss_pred ccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccc
Q 036119 613 SLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYD 692 (839)
Q Consensus 613 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 692 (839)
+++.|++++|.. ..+|..+ .++|+.|++++|.+. .+| ..+++|++|++++|.+.. +|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L-~~lp~~l-~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNL-SSLPDNL-PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCC-SCCCSCC-CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCC-CccCHhH-cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 789999998864 4466544 378999999999887 576 468999999999997665 776 544 999999999
Q ss_pred ccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCC
Q 036119 693 CENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSP 772 (839)
Q Consensus 693 ~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 772 (839)
|+..+ +|. .+++|+.|++++|.+.. +|. .+++|++|++++|.+.+ +|.+ . ++|+.|++++| .+..+
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~l--~--~~L~~L~Ls~N--~L~~l 195 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPEL--P--ESLEALDVSTN--LLESL 195 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCCC--C--TTCCEEECCSS--CCSSC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cchh--h--CCCCEEECcCC--CCCch
Confidence 97555 776 68999999999998865 665 67899999999999887 5442 2 89999999886 34466
Q ss_pred CCCCccc-------ceeeecCCCCCCccccCCCCCCccCeeeccCCCCcc
Q 036119 773 PPFPASL-------TNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLK 815 (839)
Q Consensus 773 ~~~~~~L-------~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~ 815 (839)
|.++.+| +.|++++|.. +.+|..+..+++|+.|++++|+--.
T Consensus 196 p~~~~~L~~~~~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 196 PAVPVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CCCC--------CCEEEECCSSCC-CCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred hhHHHhhhcccccceEEecCCCcc-eecCHHHhcCCCCCEEEeeCCcCCC
Confidence 6566678 9999999965 4688878779999999999985433
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.45 E-value=7e-13 Score=128.96 Aligned_cols=167 Identities=12% Similarity=-0.018 Sum_probs=80.8
Q ss_pred CcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccc
Q 036119 636 SLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKIS 715 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~ 715 (839)
++++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|...+..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 33444444444333333334445555555555554432222233444555555555554333222234455555555555
Q ss_pred cccCCccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccc
Q 036119 716 ECPSVVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESIS 794 (839)
Q Consensus 716 ~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 794 (839)
+|.+....+.. ..+++|++|++++|.+.+.. ...+..+++|+.+++++|- +...+++|+.|+++.|...+.+|
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~-----~~~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNP-----WDCTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCC-----BCCCTTTTHHHHHHHHHCTTTBB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCC-----eecCCCCHHHHHHHHHhCCceee
Confidence 55444322221 33455555555555544322 1123344445555444431 11123468888888888888888
Q ss_pred cCCCCCCccCeeeccCCC
Q 036119 795 SIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 795 ~~~~~l~~L~~L~l~~c~ 812 (839)
..++.++. ++..|.
T Consensus 183 ~~~~~l~~----~~~~C~ 196 (208)
T 2o6s_A 183 NSAGSVAP----DSAKCS 196 (208)
T ss_dssp CTTSSBCT----TCSBBT
T ss_pred ccCccccC----Cccccc
Confidence 77766655 455553
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=6.6e-13 Score=147.76 Aligned_cols=184 Identities=21% Similarity=0.196 Sum_probs=134.7
Q ss_pred CcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecC
Q 036119 589 TLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFG 668 (839)
Q Consensus 589 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 668 (839)
+++.|++++|. ++.++. .++++|+.|++++|... .+| ...++|+.|++++|.+.+ +|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~--~l~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPD--NLPPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCCS--CCCTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCC-CCccCH--hHcCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 78899998875 444554 23478999999988644 566 345889999999998876 666 544 899999999
Q ss_pred CCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCcccc
Q 036119 669 CPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLE 748 (839)
Q Consensus 669 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 748 (839)
|.+.. +|. .+++|+.|++++|.+.+ +|. .+++|+.|++++|.+.. +|. ..++|+.|++++|.+.. +|.
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~--l~~~L~~L~Ls~N~L~~-lp~ 197 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE--LPESLEALDVSTNLLES-LPA 197 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSS-CCC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch--hhCCCCEEECcCCCCCc-hhh
Confidence 97655 666 56799999999987544 776 57899999999998765 666 33899999999998874 444
Q ss_pred ccCCCcccc-------ceEEEecCCCCCcCCCC---CCcccceeeecCCCCCCccccCCCCC
Q 036119 749 WGSNRFTSL-------RRFTIWGGCPDLVSPPP---FPASLTNLWISDMPDLESISSIGENL 800 (839)
Q Consensus 749 ~~~~~l~~L-------~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~l 800 (839)
+ .. +| +.|++++|. +..+|. .+++|+.|++++|+..+.+|..+..+
T Consensus 198 ~--~~--~L~~~~~~L~~L~Ls~N~--l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 198 V--PV--RNHHSEETEIFFRCRENR--ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C--C----------CCEEEECCSSC--CCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred H--HH--hhhcccccceEEecCCCc--ceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 2 11 66 889998853 334554 35689999999998888777665443
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.42 E-value=5.7e-13 Score=128.18 Aligned_cols=128 Identities=15% Similarity=0.066 Sum_probs=66.8
Q ss_pred cccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecc
Q 036119 612 QSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIY 691 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 691 (839)
++|++|++++| .+..++.....++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 66 ~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 66 HNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144 (197)
T ss_dssp TTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred CCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence 34555555555 22333322333555555555555555445555556666666666665554444445555566666666
Q ss_pred cccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCC
Q 036119 692 DCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKI 742 (839)
Q Consensus 692 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 742 (839)
+|+.++.+| .+..+++|+.|++++|++.. ++....+++|++|++++|++
T Consensus 145 ~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 145 YNGAITDIM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp SCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC--
T ss_pred CCCCccccH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCccc
Confidence 665444454 45556666666666665532 33334455566666666554
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=9.1e-13 Score=126.75 Aligned_cols=130 Identities=15% Similarity=0.170 Sum_probs=105.1
Q ss_pred cccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecc
Q 036119 612 QSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIY 691 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 691 (839)
++|+.|++++|... .++.....++|++|++++|.+. .+ ..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 44 ~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 46777777776433 4444445589999999999553 23 367889999999999998877778888889999999999
Q ss_pred cccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCC
Q 036119 692 DCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 692 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 744 (839)
+|......|..+..+++|++|++++|+.+..++....+++|++|++++|++.+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC
Confidence 99887777888899999999999999856667766778999999999998875
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=1.2e-12 Score=134.22 Aligned_cols=60 Identities=22% Similarity=0.216 Sum_probs=46.3
Q ss_pred CCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccc
Q 036119 292 HLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQ 361 (839)
Q Consensus 292 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~ 361 (839)
.+++|++|++++|. +..+|. +..+++|++|++++|.+.+..| +.. +++|++|++++| .+.
T Consensus 44 ~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~-----l~~L~~L~l~~n-~l~ 103 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LAN-----LKNLGWLFLDEN-KVK 103 (291)
T ss_dssp HHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTT-----CTTCCEEECCSS-CCC
T ss_pred hcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCCccCCCcc--ccc-----CCCCCEEECCCC-cCC
Confidence 45678889999888 777764 8888899999999998865433 444 888888888886 454
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=1.3e-12 Score=134.14 Aligned_cols=172 Identities=16% Similarity=0.112 Sum_probs=112.2
Q ss_pred cccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecc
Q 036119 612 QSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIY 691 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 691 (839)
++|+.|++++|. +..++.....++|+.|++++|++.+..+ +..+++|++|++++|.... ++. +..+++|++|+++
T Consensus 46 ~~L~~L~l~~~~-i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 46 NSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GTTCTTCCEEECT
T ss_pred CcccEEEccCCC-cccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-hccCCCCCEEECC
Confidence 567788887764 3334444445777777777777765433 6677777777777775443 332 5666777777777
Q ss_pred cccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcC
Q 036119 692 DCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVS 771 (839)
Q Consensus 692 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 771 (839)
+|.... + +.+..+++|+.|++++|.+.. ++....+++|++|++++|.+.+..+ ...
T Consensus 121 ~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~l~~~~~---l~~------------------ 176 (291)
T 1h6t_A 121 HNGISD-I-NGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP---LAG------------------ 176 (291)
T ss_dssp TSCCCC-C-GGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG---GTT------------------
T ss_pred CCcCCC-C-hhhcCCCCCCEEEccCCcCCc-chhhccCCCCCEEEccCCccccchh---hcC------------------
Confidence 775433 3 346677777777777776653 3444566777777777777665322 111
Q ss_pred CCCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCCCCccccCC
Q 036119 772 PPPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDCPKLKYFSE 819 (839)
Q Consensus 772 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 819 (839)
+++|+.|++++|.. +.++ .+..+++|+.|++++| .+...+.
T Consensus 177 ----l~~L~~L~L~~N~i-~~l~-~l~~l~~L~~L~l~~n-~i~~~~~ 217 (291)
T 1h6t_A 177 ----LTKLQNLYLSKNHI-SDLR-ALAGLKNLDVLELFSQ-ECLNKPI 217 (291)
T ss_dssp ----CTTCCEEECCSSCC-CBCG-GGTTCTTCSEEEEEEE-EEECCCE
T ss_pred ----CCccCEEECCCCcC-CCCh-hhccCCCCCEEECcCC-cccCCcc
Confidence 34688888888855 4455 3778999999999998 4555443
No 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=3e-14 Score=153.42 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=78.5
Q ss_pred CCcceeeecccccc-cCcc---ccccCCCCCCeEEecCCCCCc-----ccCCCCCCCCCcceEeccccccc----ccccc
Q 036119 635 TSLEEISISVLENL-KSLP---ADLHNLHHLQKIWIFGCPNLE-----SFPEEGLPSTKLTELTIYDCENL----KALPN 701 (839)
Q Consensus 635 ~~L~~L~l~~~~~~-~~~~---~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~l----~~lp~ 701 (839)
++|++|++++|++. ..++ ..+..+++|++|++++|.+.. ..+..+..+++|++|++++|... ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 67888888888776 3344 355677888888888886652 23335667788888888888764 56777
Q ss_pred cCcccccccccccccccCCcc----CCCC---CCCCCcceEEecCCCCCC
Q 036119 702 CMHNLTSLLNLKISECPSVVS----FPED---GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 702 ~l~~l~~L~~L~l~~~~~~~~----~~~~---~~~~~L~~L~l~~~~~~~ 744 (839)
.+..+++|++|++++|.+... ++.. +.+++|++|++++|.+.+
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 788888888888888877543 2221 236788888888888775
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=5.8e-14 Score=149.54 Aligned_cols=109 Identities=6% Similarity=-0.129 Sum_probs=57.9
Q ss_pred CcceeeecccccccCcccc----ccCC-CCCCeEEecCCCCCcc----cCCCCCC-CCCcceEecccccccccc----cc
Q 036119 636 SLEEISISVLENLKSLPAD----LHNL-HHLQKIWIFGCPNLES----FPEEGLP-STKLTELTIYDCENLKAL----PN 701 (839)
Q Consensus 636 ~L~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~l~~l----p~ 701 (839)
+|++|++++|.+.+..+.. +..+ ++|++|++++|.+... ++..+.. .++|++|++++|+..... ..
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 247 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence 6666666666665544432 2334 4677777777654431 2222222 236777777776543321 23
Q ss_pred cCcccccccccccccccCCccC-------C-CCCCCCCcceEEecCCCCCC
Q 036119 702 CMHNLTSLLNLKISECPSVVSF-------P-EDGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 702 ~l~~l~~L~~L~l~~~~~~~~~-------~-~~~~~~~L~~L~l~~~~~~~ 744 (839)
.+..+++|+.|++++|.+.... + ....+++|++|++++|++..
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 3455666777777776622111 1 11345667777777776653
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.37 E-value=3.7e-14 Score=151.08 Aligned_cols=225 Identities=11% Similarity=0.016 Sum_probs=135.5
Q ss_pred CCCcceEEEeecCCccccc----CC-CCcccccceeEeccCCCchhhhhhcCC------CCcceeeecccccccCcccc-
Q 036119 587 PATLEHLEVSYCSNLALLS----RN-GNLPQSLKYLKIEDCSKLESLAERLDN------TSLEEISISVLENLKSLPAD- 654 (839)
Q Consensus 587 ~~~L~~L~l~~c~~l~~~~----~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~------~~L~~L~l~~~~~~~~~~~~- 654 (839)
+.+|++|++++|....... .. ...+.+|++|++++|......+..+.. ++|++|++++|.+.+..+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3568999998886332221 11 122237899999888654433322221 78999999998887666553
Q ss_pred ---ccCC-CCCCeEEecCCCCCcccCCC----CCC-CCCcceEecccccccc----cccccCcccc-cccccccccccCC
Q 036119 655 ---LHNL-HHLQKIWIFGCPNLESFPEE----GLP-STKLTELTIYDCENLK----ALPNCMHNLT-SLLNLKISECPSV 720 (839)
Q Consensus 655 ---~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~~l~----~lp~~l~~l~-~L~~L~l~~~~~~ 720 (839)
+..+ ++|++|++++|.+....+.. +.. .++|++|++++|.... .++..+..++ +|++|++++|.+.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 3344 78999999988765433322 222 2589999999887653 3444555565 8899999988876
Q ss_pred ccCCCC-----CCC-CCcceEEecCCCCCCcc----ccccCCCccccceEEEecCCCCCcC------CCCCCcccceeee
Q 036119 721 VSFPED-----GFP-TNLQSLDVHDLKISKPL----LEWGSNRFTSLRRFTIWGGCPDLVS------PPPFPASLTNLWI 784 (839)
Q Consensus 721 ~~~~~~-----~~~-~~L~~L~l~~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~------~~~~~~~L~~L~l 784 (839)
...+.. ... ++|++|++++|.+.... +.......++|+.|++++|...... .....++|+.|++
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 543311 123 58999999998876521 1111111346777777765322211 1123456777777
Q ss_pred cCCCC-------CCccccCCCCCCccCeeeccCC
Q 036119 785 SDMPD-------LESISSIGENLTSLKTLRLSDC 811 (839)
Q Consensus 785 ~~~~~-------l~~~~~~~~~l~~L~~L~l~~c 811 (839)
++|.. ...++..+..+++|+.|++++|
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 77752 1223344556677777777776
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.35 E-value=1.2e-12 Score=147.40 Aligned_cols=174 Identities=17% Similarity=0.116 Sum_probs=135.4
Q ss_pred CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccc
Q 036119 633 DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNL 712 (839)
Q Consensus 633 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L 712 (839)
..++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+....+ +..+++|+.|+|++|... .+| .+..+++|+.|
T Consensus 41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEE
Confidence 44789999999998754 44 57889999999999997665444 778899999999999654 455 68999999999
Q ss_pred ccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCc
Q 036119 713 KISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLES 792 (839)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 792 (839)
++++|.+.. ++....+++|+.|++++|.+.+. + .+..+++|+.|++++|...-......+++|+.|++++|....
T Consensus 115 ~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l-~--~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~- 189 (605)
T 1m9s_A 115 SLEHNGISD-INGLVHLPQLESLYLGNNKITDI-T--VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD- 189 (605)
T ss_dssp ECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC-G--GGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-
T ss_pred EecCCCCCC-CccccCCCccCEEECCCCccCCc-h--hhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC-
Confidence 999998864 55557789999999999999875 2 357889999999988633222112246789999999996644
Q ss_pred cccCCCCCCccCeeeccCCCCccccCC
Q 036119 793 ISSIGENLTSLKTLRLSDCPKLKYFSE 819 (839)
Q Consensus 793 ~~~~~~~l~~L~~L~l~~c~~l~~l~~ 819 (839)
++ .+..+++|+.|++++| .+...|.
T Consensus 190 l~-~l~~l~~L~~L~L~~N-~l~~~p~ 214 (605)
T 1m9s_A 190 LR-ALAGLKNLDVLELFSQ-ECLNKPI 214 (605)
T ss_dssp CG-GGTTCTTCSEEECCSE-EEECCCC
T ss_pred Ch-HHccCCCCCEEEccCC-cCcCCcc
Confidence 44 5778999999999998 4555543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.33 E-value=1.3e-11 Score=120.72 Aligned_cols=128 Identities=16% Similarity=0.104 Sum_probs=77.1
Q ss_pred ceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccc
Q 036119 615 KYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCE 694 (839)
Q Consensus 615 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 694 (839)
+.++.+++ .+..+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+....|..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~-~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCC-CcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 34555443 2334443222 567777777777665555566667777777777776665556666667777777777765
Q ss_pred ccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCC
Q 036119 695 NLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 695 ~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 744 (839)
.....+..+..+++|+.|++++|.+....+.. ..+++|++|++++|.+.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence 44322333566777777777777665444433 455667777777776654
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.32 E-value=5.3e-12 Score=142.25 Aligned_cols=124 Identities=15% Similarity=0.092 Sum_probs=52.7
Q ss_pred cccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecc
Q 036119 612 QSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIY 691 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 691 (839)
++|+.|++++|... .++.....++|+.|+|++|.+.+ +| .+..+++|+.|++++|.+.. ++ .+..+++|+.|+|+
T Consensus 65 ~~L~~L~Ls~N~l~-~~~~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 65 PNVTKLFLNGNKLT-DIKPLTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-IN-GLVHLPQLESLYLG 139 (605)
T ss_dssp TTCCEEECTTSCCC-CCGGGGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-CG-GGGGCTTCSEEECC
T ss_pred CCCCEEEeeCCCCC-CChhhccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-Cc-cccCCCccCEEECC
Confidence 44555555554322 22222233445555555544432 22 34444455555555443332 21 23344445555554
Q ss_pred cccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCC
Q 036119 692 DCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 692 ~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 743 (839)
+|.... + ..+..+++|+.|+|++|.+....| ...+++|+.|+|++|++.
T Consensus 140 ~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 140 NNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp SSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred CCccCC-c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC
Confidence 443322 2 234444445555555444433222 333444555555544444
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=5.3e-12 Score=122.67 Aligned_cols=132 Identities=16% Similarity=0.018 Sum_probs=83.9
Q ss_pred cccceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEec
Q 036119 612 QSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTI 690 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 690 (839)
++|++|++++|......+..+ ..++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 131 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence 456666666654332222222 2366777777777766555555667778888888777665444444566777888888
Q ss_pred ccccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccc
Q 036119 691 YDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEW 749 (839)
Q Consensus 691 ~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 749 (839)
++|+..+..+..+..+++|+.|++++|++.. .+++|++|+++.|.+.+.+|.+
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 132 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred CCCccceeCHHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCceeecc
Confidence 7776554444446777778888887776543 3567777777777777766643
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.29 E-value=1.8e-11 Score=119.63 Aligned_cols=130 Identities=12% Similarity=0.021 Sum_probs=84.1
Q ss_pred cceeEeccCCCchhhhhhcCCCCcceeeecccccccCcc-ccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccc
Q 036119 614 LKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLP-ADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYD 692 (839)
Q Consensus 614 L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 692 (839)
-+.++++++. ++.+|..+ ...++.|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 13 ~~~l~~s~n~-l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQK-LNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSC-CSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCC-cccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 3466666653 33344322 2456777777777766543 3356777777777777766555555667777777777777
Q ss_pred ccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCc
Q 036119 693 CENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKP 745 (839)
Q Consensus 693 ~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~ 745 (839)
|...+..|..+..+++|++|++++|.+....|.. ..+++|++|++++|.+.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence 7665555555777777777777777776554443 4567777777777776654
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.29 E-value=1.8e-11 Score=119.77 Aligned_cols=134 Identities=13% Similarity=0.073 Sum_probs=107.5
Q ss_pred cccccceeEeccCCCchhhhhhcC-CCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceE
Q 036119 610 LPQSLKYLKIEDCSKLESLAERLD-NTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTEL 688 (839)
Q Consensus 610 ~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 688 (839)
++++++.|++++|......+..+. .++|+.|++++|++.+..|..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence 345678888877754433332333 4789999999999988888899999999999999997764444456778999999
Q ss_pred ecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCC
Q 036119 689 TIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 689 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~ 743 (839)
++++|.+....|..+..+++|+.|++++|.+....+.. ..+++|++|++++|++.
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99999877777888999999999999999987655543 56889999999999876
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.27 E-value=2.8e-11 Score=119.20 Aligned_cols=133 Identities=13% Similarity=-0.020 Sum_probs=83.3
Q ss_pred ccccceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEe
Q 036119 611 PQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELT 689 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 689 (839)
+++|+.|++++|......+..+ ..++|+.|++++|++....+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 3566666666665444333333 236677777777776444444556777777777777765544444456677777777
Q ss_pred cccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCC
Q 036119 690 IYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 690 l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 744 (839)
+++|.. ..+|..+..+++|+.|++++|.+....+.. ..+++|+.|++++|++..
T Consensus 119 Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 119 MCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCSSCC-CSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred ccCCcc-cccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 777753 366777777777777777777665433322 456777777777777653
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.27 E-value=2.4e-11 Score=119.76 Aligned_cols=130 Identities=14% Similarity=0.034 Sum_probs=99.8
Q ss_pred ccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccc
Q 036119 613 SLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYD 692 (839)
Q Consensus 613 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 692 (839)
+.+.++.+++ .+..+|..+ .++|+.|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 20 s~~~v~c~~~-~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSK-RHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTS-CCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCC-CcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 3556666553 344455432 27899999999999888888888999999999999976544445567889999999999
Q ss_pred ccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCc
Q 036119 693 CENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKP 745 (839)
Q Consensus 693 ~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~ 745 (839)
|......+..+..+++|+.|++++|.+. .+|.. ..+++|++|++++|.+.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCcc
Confidence 9765544555788999999999999886 55544 6788999999999988753
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.25 E-value=8.9e-12 Score=125.61 Aligned_cols=163 Identities=13% Similarity=0.050 Sum_probs=87.6
Q ss_pred ccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccc
Q 036119 613 SLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYD 692 (839)
Q Consensus 613 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 692 (839)
++..+.+.++. +..++.....++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++
T Consensus 20 ~l~~l~l~~~~-i~~~~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQS-VTDLVSQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSC-TTSEECHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCC-cccccchhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCC
Confidence 35555555543 2222222233666666666665542 33 45566666666666665443 332 55566666666666
Q ss_pred ccccccccccCcccccccccccccccCCccCCCCCCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCC
Q 036119 693 CENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSP 772 (839)
Q Consensus 693 ~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 772 (839)
|+. ..+|.. .. ++|+.|++++|.+.. ++....+++|++|++++|++.+. + .+..++
T Consensus 95 N~l-~~l~~~-~~-~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~~-~--~l~~l~----------------- 150 (263)
T 1xeu_A 95 NRL-KNLNGI-PS-ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKSI-V--MLGFLS----------------- 150 (263)
T ss_dssp SCC-SCCTTC-CC-SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCBC-G--GGGGCT-----------------
T ss_pred Ccc-CCcCcc-cc-CcccEEEccCCccCC-ChhhcCcccccEEECCCCcCCCC-h--HHccCC-----------------
Confidence 643 334432 22 666666666665543 34345566666666666666542 1 123333
Q ss_pred CCCCcccceeeecCCCCCCccccCCCCCCccCeeeccCC
Q 036119 773 PPFPASLTNLWISDMPDLESISSIGENLTSLKTLRLSDC 811 (839)
Q Consensus 773 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 811 (839)
+|+.|++++|..... ..+..+++|+.|++++|
T Consensus 151 -----~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 151 -----KLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp -----TCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred -----CCCEEECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence 556666666644333 34555666666666665
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.25 E-value=2.8e-11 Score=118.29 Aligned_cols=134 Identities=12% Similarity=-0.008 Sum_probs=106.2
Q ss_pred ccccceeEeccCCCchhhhh--hcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceE
Q 036119 611 PQSLKYLKIEDCSKLESLAE--RLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTEL 688 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 688 (839)
++.++.|++++|......+. ....++|+.|++++|++.+..+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 34567777777654333222 2245788999999988877777788899999999999998876666667888999999
Q ss_pred ecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCC
Q 036119 689 TIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 689 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 744 (839)
++++|.+.+..|..+..+++|+.|++++|.+....|.. ..+++|++|++++|++..
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 99999877777888999999999999999987765654 668899999999998874
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.24 E-value=1.6e-11 Score=130.49 Aligned_cols=132 Identities=16% Similarity=0.055 Sum_probs=68.7
Q ss_pred ccccceeEeccCCCchhhhhhc--CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceE
Q 036119 611 PQSLKYLKIEDCSKLESLAERL--DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTEL 688 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 688 (839)
++.++.|++++|......+..+ ..++|+.|++++|++.+..+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 3456666666664333222222 33556666666665555444455556666666666655443333344555566666
Q ss_pred ecccccccccccccCcccccccccccccccCCccCCCC-----CCCCCcceEEecCCCCC
Q 036119 689 TIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-----GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 689 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~ 743 (839)
++++|.+....|..+..+++|+.|++++|.+.. +|.. ..+++|+.|++++|++.
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCC
Confidence 666655444445555555666666666555543 2221 23455555555555554
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.22 E-value=2.5e-11 Score=128.91 Aligned_cols=172 Identities=14% Similarity=0.076 Sum_probs=118.9
Q ss_pred cEEEEcCCCCCcCCchhhhcccCCCCcceEEEeecCCcccccCCCC-cccccceeEeccCCCchhhhhhc-CCCCcceee
Q 036119 564 RTIIIGGCHALESLPEAWMHNELPATLEHLEVSYCSNLALLSRNGN-LPQSLKYLKIEDCSKLESLAERL-DNTSLEEIS 641 (839)
Q Consensus 564 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~ 641 (839)
+.++.+++ .+..+|.. +|..++.|+++++......+.... .+++|+.|++++|......+..+ ..++|+.|+
T Consensus 21 ~~l~c~~~-~l~~iP~~-----~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQS-----LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSS-CCSSCCSS-----CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCCC-CcCccCcc-----CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 45666655 46666653 345788899888854433333232 45688999998886544333333 348899999
Q ss_pred ecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccC----cccccccccccccc
Q 036119 642 ISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCM----HNLTSLLNLKISEC 717 (839)
Q Consensus 642 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l----~~l~~L~~L~l~~~ 717 (839)
+++|++....+..+..+++|++|++++|.+....+..+..+++|+.|++++|... .+|..+ ..+++|+.|++++|
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSS
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCC
Confidence 9998887766667788899999999998877666777888889999999888644 455443 56888999999988
Q ss_pred cCCccCCCC--CCCCC--cceEEecCCCCC
Q 036119 718 PSVVSFPED--GFPTN--LQSLDVHDLKIS 743 (839)
Q Consensus 718 ~~~~~~~~~--~~~~~--L~~L~l~~~~~~ 743 (839)
.+.. +|.. ..+++ |+.|++++|++.
T Consensus 174 ~l~~-l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 174 KLKK-LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCC-CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCc-cCHHHhhhccHhhcceEEecCCCcc
Confidence 8763 4421 23444 478889888876
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.19 E-value=6.9e-11 Score=119.08 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=49.9
Q ss_pred hcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccc
Q 036119 290 LNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQ 361 (839)
Q Consensus 290 ~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~ 361 (839)
+..+++|++|++++|. +..+| .+..+++|++|++++|.+.+..| +.. +++|++|++++| .++
T Consensus 37 ~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~-----l~~L~~L~L~~N-~l~ 98 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISDLSP--LKD-----LTKLEELSVNRN-RLK 98 (263)
T ss_dssp HHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTT-----CSSCCEEECCSS-CCS
T ss_pred hhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCCChh--hcc-----CCCCCEEECCCC-ccC
Confidence 4567889999999998 88888 68889999999999999855433 445 899999999986 555
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.19 E-value=2.7e-11 Score=113.06 Aligned_cols=137 Identities=14% Similarity=0.042 Sum_probs=69.5
Q ss_pred CCCCCeEEecCCCCC-cccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceE
Q 036119 658 LHHLQKIWIFGCPNL-ESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSL 735 (839)
Q Consensus 658 l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L 735 (839)
.++|++|++++|... ..+|..+..+++|++|++++|.... + ..+..+++|+.|++++|.+...+|.. ..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 345555555555443 2445444555555555555554322 2 44555555666666655554433332 225566666
Q ss_pred EecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCccc---cCCCCCCccCeeeccCCC
Q 036119 736 DVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESIS---SIGENLTSLKTLRLSDCP 812 (839)
Q Consensus 736 ~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~l~~L~~L~l~~c~ 812 (839)
++++|.+.+......+.. +++|+.|++++|+.....+ ..+..+++|+.|++++|
T Consensus 101 ~Ls~N~l~~~~~~~~l~~----------------------l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n- 157 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKK----------------------LECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR- 157 (168)
T ss_dssp ECBSSSCCSSGGGGGGSS----------------------CSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-
T ss_pred eccCCccCcchhHHHHhc----------------------CCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-
Confidence 666665544211000111 1246666666665433222 24566777888888777
Q ss_pred CccccCC
Q 036119 813 KLKYFSE 819 (839)
Q Consensus 813 ~l~~l~~ 819 (839)
.+..+|.
T Consensus 158 ~~~~~~~ 164 (168)
T 2ell_A 158 EDQEAPD 164 (168)
T ss_dssp TSCBCCS
T ss_pred Chhhccc
Confidence 4455543
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.15 E-value=8.8e-12 Score=144.36 Aligned_cols=109 Identities=19% Similarity=0.251 Sum_probs=59.5
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKI 714 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l 714 (839)
.+|+.|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..+..+++|+.|+|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 45555555555543 44444445566666666665444 45555555556666666665433 45555566666666666
Q ss_pred ccccCCccCCCC-CCCCCcceEEecCCCCCCccc
Q 036119 715 SECPSVVSFPED-GFPTNLQSLDVHDLKISKPLL 747 (839)
Q Consensus 715 ~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~ 747 (839)
++|.+. .+|.. +.+++|++|+|++|++.+.++
T Consensus 301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh
Confidence 665543 34432 445566666666666555443
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.14 E-value=1.2e-11 Score=112.80 Aligned_cols=109 Identities=15% Similarity=0.071 Sum_probs=80.8
Q ss_pred CCcceeeecccccc-cCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccc
Q 036119 635 TSLEEISISVLENL-KSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLK 713 (839)
Q Consensus 635 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~ 713 (839)
++++.|++++|.+. +.+|..+..+++|++|++++|..... ..+..+++|++|++++|...+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55667777777665 56776777888888888888866544 5567788888888888876666777777788888888
Q ss_pred cccccCCccC--CCCCCCCCcceEEecCCCCCCc
Q 036119 714 ISECPSVVSF--PEDGFPTNLQSLDVHDLKISKP 745 (839)
Q Consensus 714 l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~ 745 (839)
+++|.+.... +....+++|++|++++|++.+.
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 8888875421 2335678888888888877653
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.14 E-value=2.5e-11 Score=113.33 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=76.0
Q ss_pred CCcceeeecccccc-cCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccc
Q 036119 635 TSLEEISISVLENL-KSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLK 713 (839)
Q Consensus 635 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~ 713 (839)
++|+.|++++|.+. +.+|..+..+++|++|++++|..... ..+..+++|++|++++|...+.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 46666667778888888888865443 5566777888888888876665676666788888888
Q ss_pred cccccCCccC--CCCCCCCCcceEEecCCCCCCc
Q 036119 714 ISECPSVVSF--PEDGFPTNLQSLDVHDLKISKP 745 (839)
Q Consensus 714 l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~ 745 (839)
+++|.+.... +....+++|++|++++|++.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence 8888765422 2235677888888888877653
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.14 E-value=1.6e-10 Score=110.28 Aligned_cols=129 Identities=13% Similarity=0.076 Sum_probs=96.3
Q ss_pred ceeEeccCCCchhhhhhcCCCCcceeeecccccccCccc-cccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccc
Q 036119 615 KYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPA-DLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDC 693 (839)
Q Consensus 615 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 693 (839)
+.++++++. ++.+|..+. .+++.|++++|.+.+..+. .+..+++|++|++++|.+....|..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~-l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSC-CSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCC-cCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 455665543 244444222 3778888888877655543 3778889999999998877777778888889999999998
Q ss_pred cccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCc
Q 036119 694 ENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKP 745 (839)
Q Consensus 694 ~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~ 745 (839)
.+.+..|..+..+++|++|++++|.+....|.. ..+++|++|++++|++.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 777666667888899999999999887766654 6678899999999988743
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.08 E-value=5.2e-11 Score=108.62 Aligned_cols=85 Identities=13% Similarity=0.058 Sum_probs=47.8
Q ss_pred CCCCCeEEecCCCCC-cccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceE
Q 036119 658 LHHLQKIWIFGCPNL-ESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSL 735 (839)
Q Consensus 658 l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L 735 (839)
.++|+.|++++|... +.+|..+..+++|++|++++|.... + ..+..+++|+.|++++|.+...+|.. ..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 456666666666554 3555555566666666666664333 2 44556666666666666555433332 225556666
Q ss_pred EecCCCCCC
Q 036119 736 DVHDLKISK 744 (839)
Q Consensus 736 ~l~~~~~~~ 744 (839)
++++|.+.+
T Consensus 94 ~ls~N~i~~ 102 (149)
T 2je0_A 94 NLSGNKIKD 102 (149)
T ss_dssp ECTTSCCCS
T ss_pred ECCCCcCCC
Confidence 666655543
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.08 E-value=2.5e-12 Score=144.11 Aligned_cols=188 Identities=13% Similarity=0.056 Sum_probs=127.0
Q ss_pred cccceeEeccCCCchhhhhhcC-CCCcceeeecccc-------------cccCccccccCCCCCCeEE-ecCCCCCcccC
Q 036119 612 QSLKYLKIEDCSKLESLAERLD-NTSLEEISISVLE-------------NLKSLPADLHNLHHLQKIW-IFGCPNLESFP 676 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~~~~ 676 (839)
++|+.|++++|. ++.+|..+. .++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.. ..++
T Consensus 349 ~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-~~L~ 426 (567)
T 1dce_A 349 EQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-DDLR 426 (567)
T ss_dssp TTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-HHHH
T ss_pred ccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-chhh
Confidence 578888888874 456665544 3778888886664 4455666677778888887 443311 1111
Q ss_pred C--------CCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCccc
Q 036119 677 E--------EGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPLL 747 (839)
Q Consensus 677 ~--------~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~ 747 (839)
. .......|+.|++++|.. ..+|. +..+++|+.|++++|.+. .+|.. +.+++|++|++++|.+.+ +|
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp 502 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD 502 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCC-SSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG
T ss_pred hhhhhcccccccCccCceEEEecCCCC-CCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc
Confidence 0 000112578888888854 44776 888888888888888776 55544 667888888888888775 33
Q ss_pred cccCCCccccceEEEecCCCCCcCCCCCCcccceeeecCCCCCCcc-ccCCCCCCccCeeeccCCCCccccCCCC-----
Q 036119 748 EWGSNRFTSLRRFTIWGGCPDLVSPPPFPASLTNLWISDMPDLESI-SSIGENLTSLKTLRLSDCPKLKYFSEQG----- 821 (839)
Q Consensus 748 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~l~~~~----- 821 (839)
. +.. +++|+.|++++|...+.. |..+..+++|+.|++++| .++.+|+..
T Consensus 503 ~--l~~----------------------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~ 557 (567)
T 1dce_A 503 G--VAN----------------------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAE 557 (567)
T ss_dssp G--GTT----------------------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHH
T ss_pred c--cCC----------------------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHH
Confidence 1 122 347888888888776665 888899999999999998 677776532
Q ss_pred CCcccceee
Q 036119 822 LPKSLLQLH 830 (839)
Q Consensus 822 ~~~sL~~L~ 830 (839)
..|+|+.|+
T Consensus 558 ~lp~L~~L~ 566 (567)
T 1dce_A 558 MLPSVSSIL 566 (567)
T ss_dssp HCTTCSEEE
T ss_pred HCcccCccC
Confidence 135788775
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.04 E-value=7.9e-10 Score=105.33 Aligned_cols=125 Identities=16% Similarity=0.074 Sum_probs=92.6
Q ss_pred eeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccc
Q 036119 616 YLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCEN 695 (839)
Q Consensus 616 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 695 (839)
.++++++. +..+|..+ .++++.|++++|.+. .+|..+..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 14 ~l~~~~~~-l~~ip~~~-~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKG-LKVLPKGI-PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSC-CSSCCSCC-CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCC-CCcCCCCC-CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 44444432 33344322 257777888887775 5667888899999999999987766666788889999999999876
Q ss_pred cccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCC
Q 036119 696 LKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 696 l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~ 743 (839)
....|..+..+++|+.|++++|.+....+.. ..+++|+.|++++|++.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6666667888999999999999886544332 56788999999999875
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=1.8e-09 Score=101.60 Aligned_cols=131 Identities=15% Similarity=-0.011 Sum_probs=92.4
Q ss_pred cceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccc
Q 036119 614 LKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDC 693 (839)
Q Consensus 614 L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 693 (839)
.+.+++.++. +..++... .++|+.|++++|++.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~-l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSC-CSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCC-CccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3445554442 23333221 257788888888776655556778899999999998766544455678889999999998
Q ss_pred cccccccccCcccccccccccccccCCccCCCC-CCCCCcceEEecCCCCCCcc
Q 036119 694 ENLKALPNCMHNLTSLLNLKISECPSVVSFPED-GFPTNLQSLDVHDLKISKPL 746 (839)
Q Consensus 694 ~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~ 746 (839)
...+..+..+..+++|+.|++++|.+....+.. ..+++|++|++++|++.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 766555556788899999999999876443333 55788999999999887543
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.01 E-value=1e-09 Score=104.67 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=91.4
Q ss_pred ccccceeEeccCCCchhhhh--hcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceE
Q 036119 611 PQSLKYLKIEDCSKLESLAE--RLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTEL 688 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 688 (839)
+.+++.|++++|......+. ....++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 34677777777754332222 2345889999999999988888889999999999999998877777778889999999
Q ss_pred ecccccccccccccCcccccccccccccccCCcc
Q 036119 689 TIYDCENLKALPNCMHNLTSLLNLKISECPSVVS 722 (839)
Q Consensus 689 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 722 (839)
++++|++.+..|..+..+++|+.|++++|++...
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 9999988888888999999999999999988643
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.97 E-value=1.9e-10 Score=108.06 Aligned_cols=126 Identities=17% Similarity=0.088 Sum_probs=83.4
Q ss_pred cccceeEeccCCCchhhhhhcCC-CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCC-CCCCCcceEe
Q 036119 612 QSLKYLKIEDCSKLESLAERLDN-TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEG-LPSTKLTELT 689 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~ 689 (839)
++|+.|++++|... .++..... ++|+.|++++|.+.+. ..+..+++|++|++++|.+. .+|... ..+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEE
Confidence 45677777766432 33333333 3777777777776553 46677888888888888655 344333 6677888888
Q ss_pred cccccccccccc--cCcccccccccccccccCCccCCC-----CCCCCCcceEEecCCCCC
Q 036119 690 IYDCENLKALPN--CMHNLTSLLNLKISECPSVVSFPE-----DGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 690 l~~~~~l~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~ 743 (839)
+++|.. +.+|. .+..+++|+.|++++|++.. +|. ...+++|+.|++++|...
T Consensus 95 L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSL-VELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888754 55665 67778888888888887753 343 245677888888877654
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.96 E-value=1.9e-10 Score=133.11 Aligned_cols=159 Identities=12% Similarity=0.031 Sum_probs=101.6
Q ss_pred eeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccC
Q 036119 640 ISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPS 719 (839)
Q Consensus 640 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~ 719 (839)
+++..|.+. ..+..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..+..+++|+.|+|++|.+
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 333344333 45667889999999999999765 77877778999999999999755 8999999999999999999998
Q ss_pred CccCCCC-CCCCCcceEEecCCCCCCccccccCCCccccceEEEecCCCCCcCCCCC----CcccceeeecCCCCCCccc
Q 036119 720 VVSFPED-GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVSPPPF----PASLTNLWISDMPDLESIS 794 (839)
Q Consensus 720 ~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~~~ 794 (839)
. .+|.. +.+++|++|+|++|.+. .+|.. +..+++|+.|++++|...- .++.. ...+..+++++|.....+|
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWE-FGNLCNLQFLGVEGNPLEK-QFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCC-CCCSS-TTSCTTCCCEECTTSCCCS-HHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred C-ccChhhcCCCCCCEEECCCCCCC-ccChh-hhcCCCccEEeCCCCccCC-CChHHHhhcchhhhHHhhccCcccCcCc
Confidence 7 66755 77899999999999886 45543 6778888888887753210 11111 0122346677777666655
Q ss_pred cCCCCCCccCeeeccCC
Q 036119 795 SIGENLTSLKTLRLSDC 811 (839)
Q Consensus 795 ~~~~~l~~L~~L~l~~c 811 (839)
. .|+.|+++++
T Consensus 359 ~------~l~~l~l~~n 369 (727)
T 4b8c_D 359 H------ERRFIEINTD 369 (727)
T ss_dssp C------C---------
T ss_pred c------ccceeEeecc
Confidence 3 4556666665
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=6.3e-09 Score=108.81 Aligned_cols=234 Identities=11% Similarity=0.027 Sum_probs=130.1
Q ss_pred CcceEEEeecCCcccccCCCCcccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccC--------CCC
Q 036119 589 TLEHLEVSYCSNLALLSRNGNLPQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHN--------LHH 660 (839)
Q Consensus 589 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------l~~ 660 (839)
+++.|.+.+.-....+......+++|+.|++++|............+.+..+.+..+.+ .+..|.+ +++
T Consensus 26 ~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 26 SITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp HCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTT
T ss_pred ceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccccc---CHHHhcccccccccccCC
Confidence 57777777643222211111114567777777765431000000001122222222211 1123445 777
Q ss_pred CCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccccc-----------------ccCCc--
Q 036119 661 LQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISE-----------------CPSVV-- 721 (839)
Q Consensus 661 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~-----------------~~~~~-- 721 (839)
|+.+++.+ .....-+..+..+++|+.+++.+|.....-+..|..+.++..+.... |..+.
T Consensus 103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~ 181 (329)
T 3sb4_A 103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETT 181 (329)
T ss_dssp CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEE
T ss_pred CcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccccee
Confidence 88888777 34433334566777788888877754433344455555555444332 11110
Q ss_pred -------cCCC-----------------C------------CCCCCcceEEecCCCCCCccccccCCCccccceEEEecC
Q 036119 722 -------SFPE-----------------D------------GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIWGG 765 (839)
Q Consensus 722 -------~~~~-----------------~------------~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~ 765 (839)
.++. . ..+++|+++++++|.+.. ++...+.++++|+.+++.++
T Consensus 182 i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 182 IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp EEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT
T ss_pred EEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc
Confidence 0000 0 026789999999888764 66667888999999999875
Q ss_pred CCCCcC-CCCCCcccc-eeeecCCCCCCcc-ccCCCCCCccCeeeccCCCCccccCCCCCC--cccceee
Q 036119 766 CPDLVS-PPPFPASLT-NLWISDMPDLESI-SSIGENLTSLKTLRLSDCPKLKYFSEQGLP--KSLLQLH 830 (839)
Q Consensus 766 ~~~~~~-~~~~~~~L~-~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--~sL~~L~ 830 (839)
...+.. ...-+++|+ .+++.+ .++.+ +..+..+++|+.++++++ +++.++...+. ++|+.++
T Consensus 261 i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 261 LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 322211 112456798 999988 34455 456688999999999876 78888876553 4666664
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.88 E-value=7.6e-09 Score=98.48 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=88.2
Q ss_pred cccccceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceE
Q 036119 610 LPQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTEL 688 (839)
Q Consensus 610 ~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 688 (839)
++++|+.|++++|... .++..+ ..++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 29 ~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 29 IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp CCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence 3456778888777543 444333 34889999999999988777789999999999999998877667778889999999
Q ss_pred ecccccccccccccCcccccccccccccccCC
Q 036119 689 TIYDCENLKALPNCMHNLTSLLNLKISECPSV 720 (839)
Q Consensus 689 ~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 720 (839)
++++|.+....+..+..+++|+.|++++|+..
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 108 SLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 99999765544446889999999999999875
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.86 E-value=1.1e-09 Score=102.87 Aligned_cols=107 Identities=10% Similarity=0.016 Sum_probs=75.9
Q ss_pred CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccccccc-Ccccccccc
Q 036119 633 DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNC-MHNLTSLLN 711 (839)
Q Consensus 633 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~ 711 (839)
...+|+.|++++|.+.. +|......++|++|++++|.+.. + ..+..+++|++|++++|... .+|.. +..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence 34678888888887764 45433334488888888886654 3 45677788888888888654 45544 478888888
Q ss_pred cccccccCCccCCC---CCCCCCcceEEecCCCCCC
Q 036119 712 LKISECPSVVSFPE---DGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 712 L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~ 744 (839)
|++++|.+. .+|. ...+++|++|++++|++..
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC
Confidence 888888774 4443 2567788888888887763
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=4.4e-08 Score=102.35 Aligned_cols=99 Identities=13% Similarity=-0.033 Sum_probs=51.3
Q ss_pred CCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccccc-ccCccccccc-ccccccccCCccCCCC--CCCCCcc
Q 036119 658 LHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALP-NCMHNLTSLL-NLKISECPSVVSFPED--GFPTNLQ 733 (839)
Q Consensus 658 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~l~~l~~L~-~L~l~~~~~~~~~~~~--~~~~~L~ 733 (839)
+++|+.+++++|.....-+..+..+++|+++++.+| +..++ ..|.+|++|+ .+++.+ .+ ..++.. ..+++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l-~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SV-TAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TC-CEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cc-eEEchhhhhCCccCC
Confidence 556666666665443333334555666666666554 33333 3455666666 666655 22 233322 3456666
Q ss_pred eEEecCCCCCCccccccCCCccccceEE
Q 036119 734 SLDVHDLKISKPLLEWGSNRFTSLRRFT 761 (839)
Q Consensus 734 ~L~l~~~~~~~~~~~~~~~~l~~L~~l~ 761 (839)
.+++++|.+.. ++...+.++++|+.++
T Consensus 301 ~l~l~~n~i~~-I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGDKITT-LGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSSCCCE-ECTTTTCTTCCCCEEE
T ss_pred EEEeCCCccCc-cchhhhcCCcchhhhc
Confidence 66666665543 2333445555555553
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.85 E-value=1.8e-11 Score=117.66 Aligned_cols=106 Identities=17% Similarity=0.042 Sum_probs=71.7
Q ss_pred CCcceeeecccccccCccc------cccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccc
Q 036119 635 TSLEEISISVLENLKSLPA------DLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTS 708 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~ 708 (839)
..++.++++.+.+.+..|. .+..+++|++|++++|.... +| .+..+++|+.|++++|.. ..+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLI-KKIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEE-CSCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCc-ccccchhhcCCc
Confidence 4555555555555555444 67778888888888876543 55 566677888888888754 467776677778
Q ss_pred ccccccccccCCccCCCCCCCCCcceEEecCCCCCC
Q 036119 709 LLNLKISECPSVVSFPEDGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 709 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 744 (839)
|+.|++++|.+.. +|....+++|++|++++|.+.+
T Consensus 95 L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 95 LEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp CSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECCC
T ss_pred CCEEECcCCcCCc-CCccccCCCCCEEECCCCcCCc
Confidence 8888888876653 4433456777788887777664
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.83 E-value=1.2e-08 Score=95.92 Aligned_cols=112 Identities=18% Similarity=0.074 Sum_probs=82.2
Q ss_pred ccccceeEeccCCCchhhhhhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEe
Q 036119 611 PQSLKYLKIEDCSKLESLAERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELT 689 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 689 (839)
+++|+.|++++|......+..+ ..++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 3567777777765433222222 347888888888888766666678899999999999977655555567789999999
Q ss_pred cccccccccccccCcccccccccccccccCCcc
Q 036119 690 IYDCENLKALPNCMHNLTSLLNLKISECPSVVS 722 (839)
Q Consensus 690 l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 722 (839)
+++|...+..+..+..+++|+.|++++|++...
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 999876543334467899999999999987643
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.83 E-value=4.1e-09 Score=118.01 Aligned_cols=104 Identities=13% Similarity=0.020 Sum_probs=53.6
Q ss_pred cceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCccccccccccccc
Q 036119 637 LEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISE 716 (839)
Q Consensus 637 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~ 716 (839)
|+.|++++|.+.+ +|. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|...+ +| .+..+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4555555554433 343 555555555555555443 455555555555555555554332 44 455555555555555
Q ss_pred ccCCccC-CCC-CCCCCcceEEecCCCCCCc
Q 036119 717 CPSVVSF-PED-GFPTNLQSLDVHDLKISKP 745 (839)
Q Consensus 717 ~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~ 745 (839)
|.+.... |.. +.+++|+.|++++|++.+.
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 5554432 322 4455555555555555543
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.78 E-value=1.9e-08 Score=93.46 Aligned_cols=104 Identities=13% Similarity=0.035 Sum_probs=64.8
Q ss_pred ceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccc
Q 036119 638 EEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISEC 717 (839)
Q Consensus 638 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~ 717 (839)
+.++++++.+.. +|..+ .++|++|++++|.+....|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 345555554432 44433 366777777777666555666666777777777777554433344567777777777777
Q ss_pred cCCccCCCC-CCCCCcceEEecCCCCCC
Q 036119 718 PSVVSFPED-GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 718 ~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 744 (839)
.+....+.. ..+++|++|++++|++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 765433332 556777778887777653
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.74 E-value=2.2e-08 Score=93.07 Aligned_cols=107 Identities=18% Similarity=0.064 Sum_probs=84.1
Q ss_pred ccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccc
Q 036119 613 SLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYD 692 (839)
Q Consensus 613 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 692 (839)
+.+.++++++. +..+|..+ .++++.|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 10 ~~~~l~~s~n~-l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSC-CSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCC-cCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35667777653 34455433 37889999999999888888899999999999999987655555567899999999999
Q ss_pred ccccccccccCcccccccccccccccCCc
Q 036119 693 CENLKALPNCMHNLTSLLNLKISECPSVV 721 (839)
Q Consensus 693 ~~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 721 (839)
|++.+..+..+..+++|+.|++++|++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 97655444568999999999999998864
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.73 E-value=3.5e-08 Score=91.97 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=59.9
Q ss_pred eeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccc-cCcccccccccccccc
Q 036119 639 EISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPN-CMHNLTSLLNLKISEC 717 (839)
Q Consensus 639 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~ 717 (839)
.++++++.+ +.+|..+ .++|++|++++|.+....|..+..+++|++|++++|++.+ +|. .+..+++|+.|++++|
T Consensus 16 ~l~~~~n~l-~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 16 LVNCQNIRL-ASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp EEECCSSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCC-CccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCC
Confidence 344444444 3344433 2667777777776555555566666777777777765433 433 3466777777777777
Q ss_pred cCCccCCC-CCCCCCcceEEecCCCCC
Q 036119 718 PSVVSFPE-DGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 718 ~~~~~~~~-~~~~~~L~~L~l~~~~~~ 743 (839)
.+....+. ...+++|++|++++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 66543332 245677777777777665
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.68 E-value=4.4e-08 Score=91.35 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=80.3
Q ss_pred ceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccc
Q 036119 615 KYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCE 694 (839)
Q Consensus 615 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 694 (839)
+.++++++. +..+|..+. ++|+.|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|++|++++|+
T Consensus 15 ~~l~~~~n~-l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSC-CSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCC-CCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666553 344554332 788899999999888878888999999999999997665444446788999999999997
Q ss_pred ccccccccCcccccccccccccccCCc
Q 036119 695 NLKALPNCMHNLTSLLNLKISECPSVV 721 (839)
Q Consensus 695 ~l~~lp~~l~~l~~L~~L~l~~~~~~~ 721 (839)
+....+..+..+++|+.|++++|++..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cceeCHHHhccccCCCEEEeCCCCccc
Confidence 554333458999999999999998764
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.60 E-value=2.4e-06 Score=91.07 Aligned_cols=146 Identities=12% Similarity=0.043 Sum_probs=78.2
Q ss_pred ccccceeEeccCCCchhhhhhcCCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEec
Q 036119 611 PQSLKYLKIEDCSKLESLAERLDNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTI 690 (839)
Q Consensus 611 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 690 (839)
+++|+.+++.++.....-...+...+|+.+.+..+ +...-...|.++++|+.+.+.++ ...++...+.-.+|+.+.+
T Consensus 179 c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~l 255 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKL 255 (401)
T ss_dssp CTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEE
T ss_pred cccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEe
Confidence 34566666655432222222333466666666533 33333345667778888888764 3344443333367888877
Q ss_pred ccccccccc-cccCcccccccccccccccCC----ccCCCC--CCCCCcceEEecCCCCCCccccccCCCccccceEEEe
Q 036119 691 YDCENLKAL-PNCMHNLTSLLNLKISECPSV----VSFPED--GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIW 763 (839)
Q Consensus 691 ~~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~----~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~ 763 (839)
.++ +..+ +..|.+|++|+.+.+.++... ..++.. ..+++|+.+++.++ +. .+....+.++++|+.+.+.
T Consensus 256 p~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~-~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 256 PNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IR-ILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp ETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCCSCCEEEEC
T ss_pred CCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eE-EEhhhhhcCCCCccEEEEC
Confidence 432 3334 446777788888877766543 112222 45667777777632 22 2334444555555555553
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.51 E-value=4e-09 Score=101.21 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=86.3
Q ss_pred HHhcCCCceeEEEeCCCcccccccccccCcCcCcEeEecCccccccccCCCCCCccccCCCccEEeccCccccccCCCc-
Q 036119 288 MLLNHLPRLRVFSLCGYRNIFNLPNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFPKLRTLSLDNCCKLQGTLPR- 366 (839)
Q Consensus 288 ~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~~L~~L~L~~~~~l~~~lp~- 366 (839)
..|..+++|++|++++|. +..+| .+.++++|++|++++|.+. .+|..+.. +++|++|++++| .++ .+|.
T Consensus 42 ~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-----~~~L~~L~L~~N-~l~-~l~~~ 111 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIK-KIENLDAV-----ADTLEELWISYN-QIA-SLSGI 111 (198)
T ss_dssp HHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-----HHHCSEEEEEEE-ECC-CHHHH
T ss_pred HHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCcc-cccchhhc-----CCcCCEEECcCC-cCC-cCCcc
Confidence 467889999999999998 88898 8999999999999999985 56654333 789999999996 666 4663
Q ss_pred -CCCCccEEeecccC--ccc--ccCCCCCCccEEEeccccce
Q 036119 367 -RLLLLETLDITSCD--QLL--VTIQCLPALSELQIDGCKRV 403 (839)
Q Consensus 367 -~l~~L~~L~l~~~~--~l~--~~l~~l~~L~~L~l~~~~~~ 403 (839)
.+++|+.|++++|. .++ ..+..+++|++|++++|...
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 56789999999886 333 36889999999999998743
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.51 E-value=7e-06 Score=87.52 Aligned_cols=85 Identities=13% Similarity=0.113 Sum_probs=40.8
Q ss_pred cccCCCCCCeEEecCCCCC-----cccCCCCCCCCCcceEecccccccccc-cccCcccccccccccccccCCccCCCC-
Q 036119 654 DLHNLHHLQKIWIFGCPNL-----ESFPEEGLPSTKLTELTIYDCENLKAL-PNCMHNLTSLLNLKISECPSVVSFPED- 726 (839)
Q Consensus 654 ~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~- 726 (839)
.|.++++|+.+.+.++... ..-+..+..+++|+.+.+.++ +..+ ...|.+|++|+.+.+..+ +..++..
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~a 341 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSA 341 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHh
Confidence 4455566666666554322 122234555556666666532 3333 234555566666666433 2223222
Q ss_pred -CCCCCcceEEecCCCCC
Q 036119 727 -GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 727 -~~~~~L~~L~l~~~~~~ 743 (839)
..+ +|+.+++++|...
T Consensus 342 F~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp SSSS-CCCEEEECCSSCC
T ss_pred CCCC-CCCEEEEcCCCCc
Confidence 223 5666666665443
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.42 E-value=4.5e-07 Score=95.52 Aligned_cols=93 Identities=18% Similarity=0.034 Sum_probs=57.1
Q ss_pred CccccccCCCCCCeEEecC-CCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCCCC
Q 036119 650 SLPADLHNLHHLQKIWIFG-CPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPEDGF 728 (839)
Q Consensus 650 ~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 728 (839)
.+|. +..+++|++|+|++ |.+....+..+..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|.+....+....
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 4555 66666777777775 544433334566667777777777765555555667777777777777766543333222
Q ss_pred CCCcceEEecCCCCC
Q 036119 729 PTNLQSLDVHDLKIS 743 (839)
Q Consensus 729 ~~~L~~L~l~~~~~~ 743 (839)
..+|+.|++.+|++.
T Consensus 102 ~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCCEEECCSSCCC
T ss_pred cCCceEEEeeCCCcc
Confidence 223777777777765
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.33 E-value=5.9e-05 Score=80.66 Aligned_cols=39 Identities=8% Similarity=0.131 Sum_probs=28.6
Q ss_pred HHhcCCCceeEEEeCCCccccccc-ccccCcCcCcEeEecCc
Q 036119 288 MLLNHLPRLRVFSLCGYRNIFNLP-NEIGNLKHLRCLNLSRT 328 (839)
Q Consensus 288 ~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~ 328 (839)
.+|..+.+|+.+.+..+ +..++ .+|.++.+|+.+++..+
T Consensus 65 ~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~ 104 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS 104 (394)
T ss_dssp TTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT
T ss_pred HHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC
Confidence 45778888888888643 55665 56778888888888654
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.29 E-value=8.2e-09 Score=109.13 Aligned_cols=132 Identities=14% Similarity=0.021 Sum_probs=67.1
Q ss_pred cccceeEeccCCCchh----hhhhcC--CCCcceeeecccccccCccccc-cCCCCCCeEEecCCCCCcccCCCC-----
Q 036119 612 QSLKYLKIEDCSKLES----LAERLD--NTSLEEISISVLENLKSLPADL-HNLHHLQKIWIFGCPNLESFPEEG----- 679 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~----~~~~~~--~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~----- 679 (839)
++|+.|++++|..... +...+. .++|+.|++++|.+.......+ ..+++|++|++++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4677777777764322 122222 1467777777776543222222 234566777777765543221111
Q ss_pred CCCCCcceEecccccccc----cccccCcccccccccccccccCCccC----CC-CCCCCCcceEEecCCCCC
Q 036119 680 LPSTKLTELTIYDCENLK----ALPNCMHNLTSLLNLKISECPSVVSF----PE-DGFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 680 ~~~~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~l~~~~~~~~~----~~-~~~~~~L~~L~l~~~~~~ 743 (839)
...++|++|++++|.+.. .++..+..+++|++|++++|.+.... +. ...+++|++|++++|.+.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 123567777777665432 23344455666666666666543211 00 023446666666666654
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.25 E-value=3.1e-08 Score=104.64 Aligned_cols=133 Identities=13% Similarity=0.068 Sum_probs=75.7
Q ss_pred cccceeEeccCCCchhhhhhc--CCCCcceeeecccccccCccccc-----cCCCCCCeEEecCCCCCcc----cCCCCC
Q 036119 612 QSLKYLKIEDCSKLESLAERL--DNTSLEEISISVLENLKSLPADL-----HNLHHLQKIWIFGCPNLES----FPEEGL 680 (839)
Q Consensus 612 ~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~----~~~~~~ 680 (839)
++|+.|++++|.........+ ..++|+.|++++|.+.......+ ...++|++|++++|.+... ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 356666666664322211111 12456777777776654322222 2456778888887765431 222334
Q ss_pred CCCCcceEecccccccc----cccccCcccccccccccccccCCccCCCC-----CCCCCcceEEecCCCCCC
Q 036119 681 PSTKLTELTIYDCENLK----ALPNCMHNLTSLLNLKISECPSVVSFPED-----GFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 681 ~~~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~ 744 (839)
..++|++|++++|.+.. .++..+...++|++|++++|.+....... ...++|++|++++|++..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 45678888888876432 23455666778888888888764321110 234678888888887763
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.24 E-value=1.6e-06 Score=91.21 Aligned_cols=93 Identities=19% Similarity=0.119 Sum_probs=43.0
Q ss_pred CcccccCCCCcccccceeEeccCCCchhhh-hhc-CCCCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCC
Q 036119 600 NLALLSRNGNLPQSLKYLKIEDCSKLESLA-ERL-DNTSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPE 677 (839)
Q Consensus 600 ~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 677 (839)
.++.+|. ....++|+.|+++++..+..++ ..+ ..++|+.|+|++|++.+..|..|..+++|++|+|++|.+. .+|.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~ 97 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSW 97 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCS
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCH
Confidence 3444444 2223445666665422333332 222 2355555555555555555555555555555555555443 2332
Q ss_pred CCCCCCCcceEeccccc
Q 036119 678 EGLPSTKLTELTIYDCE 694 (839)
Q Consensus 678 ~~~~~~~L~~L~l~~~~ 694 (839)
......+|+.|++.+|+
T Consensus 98 ~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTTCSCCCCEEECCSSC
T ss_pred HHcccCCceEEEeeCCC
Confidence 22222225555555554
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.07 E-value=1.4e-06 Score=91.04 Aligned_cols=91 Identities=21% Similarity=0.195 Sum_probs=51.8
Q ss_pred ccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccC--cccccccccccccc--c-C----Cc
Q 036119 651 LPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCM--HNLTSLLNLKISEC--P-S----VV 721 (839)
Q Consensus 651 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l--~~l~~L~~L~l~~~--~-~----~~ 721 (839)
++..+..+|+|+.|.+++|... .++. + .+++|++|+|..|.........+ ..+|+|+.|+|+.+ . . ..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3344556778888888776322 2333 2 36788888887775433222222 25778888877532 1 1 10
Q ss_pred c---CCCCCCCCCcceEEecCCCCCC
Q 036119 722 S---FPEDGFPTNLQSLDVHDLKISK 744 (839)
Q Consensus 722 ~---~~~~~~~~~L~~L~l~~~~~~~ 744 (839)
. ......+|+|++|++++|.+..
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~ 266 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQN 266 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHH
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCch
Confidence 0 1111346788888888887763
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.06 E-value=0.00031 Score=74.99 Aligned_cols=145 Identities=18% Similarity=0.047 Sum_probs=73.3
Q ss_pred cCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC--CCCCCcc
Q 036119 656 HNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED--GFPTNLQ 733 (839)
Q Consensus 656 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~ 733 (839)
....+|+.+.+... ....-...+..+.+|+.+.+..+ ....-...+..+..++.+...... ++.. ..+.+|+
T Consensus 227 ~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~ 300 (394)
T 4fs7_A 227 LSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLT 300 (394)
T ss_dssp TTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCC
T ss_pred cccCCCceEEECCC-ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee----ecccccccccccc
Confidence 34556677766543 22222334555667777777654 222223455666666666555432 2222 3456777
Q ss_pred eEEecCCCCCCccccccCCCccccceEEEecCCCCCcC-CCCCCcccceeeecCCCCCCccc-cCCCCCCccCeeeccC
Q 036119 734 SLDVHDLKISKPLLEWGSNRFTSLRRFTIWGGCPDLVS-PPPFPASLTNLWISDMPDLESIS-SIGENLTSLKTLRLSD 810 (839)
Q Consensus 734 ~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~ 810 (839)
.+.+..+ ...+.+..+.++++|+.+.+.++...+.. ...-+.+|+.+++..+ ++.+. ..+.+|++|+.+++..
T Consensus 301 ~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 301 EVKLLDS--VKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp EEEECTT--CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccccccc--cceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 7777654 22344455666677777766443221111 0112345666666544 33332 2335566666666653
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.95 E-value=2.4e-06 Score=89.32 Aligned_cols=12 Identities=8% Similarity=0.207 Sum_probs=8.7
Q ss_pred CCCccEEEEcCC
Q 036119 560 PSQLRTIIIGGC 571 (839)
Q Consensus 560 ~~~L~~L~l~~~ 571 (839)
+++|+.|.+.+.
T Consensus 138 l~~L~~L~l~~~ 149 (362)
T 2ra8_A 138 FAHFEGLFWGDI 149 (362)
T ss_dssp HTTCSEEEECCC
T ss_pred cchhhheeecCc
Confidence 458888888654
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.71 E-value=0.0018 Score=68.92 Aligned_cols=103 Identities=13% Similarity=0.147 Sum_probs=52.6
Q ss_pred cccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccccc-ccCcccccccccccccccCCccCCCC--CCCC
Q 036119 654 DLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALP-NCMHNLTSLLNLKISECPSVVSFPED--GFPT 730 (839)
Q Consensus 654 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~ 730 (839)
.|.++++|+.+.+.+. ....-...+..+++|+.+.+.. .+..++ ..|.+|.+|+.+.|..+ ++.+... ..+.
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence 4556677777776543 2222233455666777777753 233343 34566777777776543 2333332 3456
Q ss_pred CcceEEecCCCCCCccccccCCCccccceEEEe
Q 036119 731 NLQSLDVHDLKISKPLLEWGSNRFTSLRRFTIW 763 (839)
Q Consensus 731 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l~ 763 (839)
+|+.+.+..+ + ..+....+.++++|+.+.+.
T Consensus 335 ~L~~i~ip~s-v-~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 335 QLERIAIPSS-V-TKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp TCCEEEECTT-C-CBCCGGGGTTCTTCCEEEES
T ss_pred CCCEEEECcc-c-CEEhHhHhhCCCCCCEEEEC
Confidence 6776666433 2 22333344444444444443
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.69 E-value=1.5e-05 Score=72.51 Aligned_cols=87 Identities=9% Similarity=0.153 Sum_probs=48.7
Q ss_pred CceeEEEeCCCcccccc-cccccCcCcCcEeEecCcc-ccccccCCCCCCccccC----CCccEEeccCccccccCCCcC
Q 036119 294 PRLRVFSLCGYRNIFNL-PNEIGNLKHLRCLNLSRTK-WEEWIPCGAGQEVDEVF----PKLRTLSLDNCCKLQGTLPRR 367 (839)
Q Consensus 294 ~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~-~~~~~p~~~~~~~~~~l----~~L~~L~L~~~~~l~~~lp~~ 367 (839)
.+|+.||+++|. ++.. -..+.++++|++|+|++|. +++.--.. +..+ ++|++|++++|.+++.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~-----L~~~~~~~~~L~~L~Ls~C~~ITD----- 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER-----LSQLENLQKSMLEMEIISCGNVTD----- 129 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH-----HHTCHHHHHHCCEEEEESCTTCCH-----
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH-----HHhcccccCCCCEEEcCCCCcCCH-----
Confidence 468888888887 4442 2345677777777777774 32210000 1112 2466666666654441
Q ss_pred CCCccEEeecccCcccccCCCCCCccEEEecccccee
Q 036119 368 LLLLETLDITSCDQLLVTIQCLPALSELQIDGCKRVV 404 (839)
Q Consensus 368 l~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~ 404 (839)
.-...+..+++|++|++++|..++
T Consensus 130 -------------~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 130 -------------KGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp -------------HHHHHGGGCTTCCEEEEESCTTCC
T ss_pred -------------HHHHHHhcCCCCCEEECCCCCCCC
Confidence 011335567788888888776443
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.61 E-value=2.6e-05 Score=70.95 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=28.2
Q ss_pred CceEEEeccCCCCCccccccCCCCCccEEeecCCCCCc
Q 036119 466 RLQFLELSCCEGLTRLPQALLTLSSLTEMRIHDCASLV 503 (839)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 503 (839)
.|+.|++++|.+...-...+..+++|+.|++++|..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It 99 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE 99 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC
Confidence 68888888888655444456778888888888886554
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.46 E-value=0.009 Score=63.54 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=44.4
Q ss_pred CCCCCCCcceEecccccccccccccCcccccccccccccccCCccCCCC--CCCCCcceEEecCCCCCCccccccCCCcc
Q 036119 678 EGLPSTKLTELTIYDCENLKALPNCMHNLTSLLNLKISECPSVVSFPED--GFPTNLQSLDVHDLKISKPLLEWGSNRFT 755 (839)
Q Consensus 678 ~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 755 (839)
.+..+.+|+.+.+.+.- ...-...+.++++|+.+.+... +..++.. ..+.+|+.+++..+ ...+.+..+.++.
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence 45666777777775531 2222345667777877777532 2344433 34567777777654 2233444455555
Q ss_pred ccceEEE
Q 036119 756 SLRRFTI 762 (839)
Q Consensus 756 ~L~~l~l 762 (839)
+|+.+.+
T Consensus 335 ~L~~i~i 341 (394)
T 4gt6_A 335 QLERIAI 341 (394)
T ss_dssp TCCEEEE
T ss_pred CCCEEEE
Confidence 5555555
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.34 E-value=0.00015 Score=71.54 Aligned_cols=71 Identities=25% Similarity=0.381 Sum_probs=52.5
Q ss_pred HHHHhcCCCceeEEEeCCCcccccc---cccccCcCcCcEeEecCccccccccCCCCCCccccCC--CccEEeccCcccc
Q 036119 286 LQMLLNHLPRLRVFSLCGYRNIFNL---PNEIGNLKHLRCLNLSRTKWEEWIPCGAGQEVDEVFP--KLRTLSLDNCCKL 360 (839)
Q Consensus 286 ~~~~~~~l~~L~~L~L~~~~~~~~l---p~~i~~L~~L~~L~L~~~~~~~~~p~~~~~~~~~~l~--~L~~L~L~~~~~l 360 (839)
++-...++++|++|+|++|. +..+ |..+..+++|++|+|++|.+.+. ..+.. +. +|++|+|++| .+
T Consensus 162 l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~-----l~~l~L~~L~L~~N-pl 232 (267)
T 3rw6_A 162 LRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDK-----IKGLKLEELWLDGN-SL 232 (267)
T ss_dssp HHHHHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGG-----GTTSCCSEEECTTS-TT
T ss_pred HHHHHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhh-----cccCCcceEEccCC-cC
Confidence 33344678999999999999 6554 46678999999999999998654 12222 44 8999999997 45
Q ss_pred ccCCC
Q 036119 361 QGTLP 365 (839)
Q Consensus 361 ~~~lp 365 (839)
.+.+|
T Consensus 233 ~~~~~ 237 (267)
T 3rw6_A 233 CDTFR 237 (267)
T ss_dssp GGGCS
T ss_pred ccccC
Confidence 54554
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.23 E-value=2.2e-05 Score=73.69 Aligned_cols=90 Identities=20% Similarity=0.143 Sum_probs=47.0
Q ss_pred cccCCCCCCeEEecCCCCCcc----cCCCCCCCCCcceEecccccccc----cccccCccccccccccc--ccccCCccC
Q 036119 654 DLHNLHHLQKIWIFGCPNLES----FPEEGLPSTKLTELTIYDCENLK----ALPNCMHNLTSLLNLKI--SECPSVVSF 723 (839)
Q Consensus 654 ~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~l--~~~~~~~~~ 723 (839)
.+...++|++|++++|.+... +...+...++|++|++++|.+.. .+...+...++|++|++ ++|.+....
T Consensus 60 ~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g 139 (185)
T 1io0_A 60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV 139 (185)
T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH
Confidence 344556666666666654321 12222233566666666665432 13445555666777777 556553221
Q ss_pred C----CC-CCCCCcceEEecCCCCC
Q 036119 724 P----ED-GFPTNLQSLDVHDLKIS 743 (839)
Q Consensus 724 ~----~~-~~~~~L~~L~l~~~~~~ 743 (839)
. .. ...++|++|++++|.+.
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 1 00 22356777777777653
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.23 E-value=0.045 Score=57.67 Aligned_cols=102 Identities=19% Similarity=0.072 Sum_probs=48.2
Q ss_pred ccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEecccccccccc-cccCcccccccccccccccCCccCCCC--CCCCC
Q 036119 655 LHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKAL-PNCMHNLTSLLNLKISECPSVVSFPED--GFPTN 731 (839)
Q Consensus 655 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~ 731 (839)
+....+|+.+.+..+ ........+..+.+|+.+.+..+ +..+ ...+.++.+|+.+.+... +..++.. ..+++
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTT
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceeccccccccccc
Confidence 334555666655443 22222234445566666666543 2223 234555666666666432 2223322 34566
Q ss_pred cceEEecCCCCCCccccccCCCccccceEEE
Q 036119 732 LQSLDVHDLKISKPLLEWGSNRFTSLRRFTI 762 (839)
Q Consensus 732 L~~L~l~~~~~~~~~~~~~~~~l~~L~~l~l 762 (839)
|+.+.+.++.+.. +.+..+.++++|+.+.+
T Consensus 288 L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 288 LTKVVMDNSAIET-LEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp CCEEEECCTTCCE-ECTTTTTTCTTCCEEEC
T ss_pred cccccccccccce-ehhhhhcCCCCCCEEEc
Confidence 6666666554432 23333444444444444
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.17 E-value=0.034 Score=58.69 Aligned_cols=119 Identities=14% Similarity=0.086 Sum_probs=71.3
Q ss_pred CCcceeeecccccccCccccccCCCCCCeEEecCCCCCcccCCCCCCCCCcceEeccccccccccc-ccCcccccccccc
Q 036119 635 TSLEEISISVLENLKSLPADLHNLHHLQKIWIFGCPNLESFPEEGLPSTKLTELTIYDCENLKALP-NCMHNLTSLLNLK 713 (839)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~ 713 (839)
.+++.+.+..+ ........+.++..|+.+.+..+ ....-...+..+.+|+.+.+..+ +..++ ..+.+|++|+.+.
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEE
T ss_pred cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceecccccccccccccccc
Confidence 45666655432 11222235567888999998765 33233345667788999988653 44443 3578889999999
Q ss_pred cccccCCccCCCC--CCCCCcceEEecCCCCCCccccccCCCccccceE
Q 036119 714 ISECPSVVSFPED--GFPTNLQSLDVHDLKISKPLLEWGSNRFTSLRRF 760 (839)
Q Consensus 714 l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~l 760 (839)
+.++.+. .++.. ..+.+|+.+.+..+ + ..+....+.++++|+.+
T Consensus 293 l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 293 MDNSAIE-TLEPRVFMDCVKLSSVTLPTA-L-KTIQVYAFKNCKALSTI 338 (379)
T ss_dssp ECCTTCC-EECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCCC
T ss_pred ccccccc-eehhhhhcCCCCCCEEEcCcc-c-cEEHHHHhhCCCCCCEE
Confidence 9876553 34433 45688999988654 2 22333344444444333
No 163
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.14 E-value=0.00057 Score=71.62 Aligned_cols=188 Identities=11% Similarity=0.092 Sum_probs=100.8
Q ss_pred CcEEEEEeccCCCCh------hh-HhhhhcccCCCCCCCEEEEEecChHHHHHh----C--------CCCeEeCCCCCcc
Q 036119 9 KKFLLVLDDVWNENY------SR-WSELSCPFGAGAAGSKIVVTTRNLVVAERM----G--------ADPVYQLKELSDD 69 (839)
Q Consensus 9 k~~LlvLDdv~~~~~------~~-~~~l~~~~~~~~~gs~iivTtr~~~v~~~~----~--------~~~~~~~~~l~~~ 69 (839)
++++||+||++.-+. .+ +..+..... ..++.++|+|++...+...+ . ....+++.+|+.+
T Consensus 128 ~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~ 206 (350)
T 2qen_A 128 GEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKD 206 (350)
T ss_dssp SCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHH
T ss_pred CCEEEEEeCHHHHhccCccchhhHHHHHHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHH
Confidence 389999999954221 12 232322221 12578999999987653322 1 1237999999999
Q ss_pred cccCcCC-------CchHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHH-HHHhccccccCCCCCcch----hchh
Q 036119 70 DCLDFTR-------HQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWE-FVLKTDIWNLRDSDILPA----LRLK 137 (839)
Q Consensus 70 ~~~~~~~-------~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~-~~~~~~~~~~~~~~~~~~----l~~k 137 (839)
|+.++.. ..--.+.+.++++.++|.|.++..++..+....+...|. ...+.....+. .++... -..+
T Consensus 207 e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~ 285 (350)
T 2qen_A 207 TSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIM-GELEELRRRSPRYV 285 (350)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHH-HHHHHHHhCChhHH
Confidence 9884321 111246778999999999999999987643211222221 11110000000 000000 1134
Q ss_pred hhhhhhccCCCCcccChhHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHhccccccccCCCcceee-cHHHHHH
Q 036119 138 QCFAYSSLFPKDYEFQDEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVM-HDLINDL 212 (839)
Q Consensus 138 ~~f~~~a~f~~~~~~~~~~li~~w~~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~m-Hdlv~~l 212 (839)
..+..+|. + ......+.....+.. - +. -......+++.|++.+++... .+.|.+ |.++++.
T Consensus 286 ~~l~~la~---g-~~~~~~l~~~~~~~~-~-----~~-~~~~~~~~l~~L~~~gli~~~---~~~y~~~~p~~~~~ 347 (350)
T 2qen_A 286 DILRAIAL---G-YNRWSLIRDYLAVKG-T-----KI-PEPRLYALLENLKKMNWIVEE---DNTYKIADPVVATV 347 (350)
T ss_dssp HHHHHHHT---T-CCSHHHHHHHHHHTT-C-----CC-CHHHHHHHHHHHHHTTSEEEE---TTEEEESSHHHHHH
T ss_pred HHHHHHHh---C-CCCHHHHHHHHHHHh-C-----CC-CHHHHHHHHHHHHhCCCEEec---CCEEEEecHHHHHH
Confidence 45555554 2 123344444332211 0 01 124567889999999999765 245665 5566654
No 164
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.07 E-value=8.5e-05 Score=69.59 Aligned_cols=109 Identities=20% Similarity=0.117 Sum_probs=70.8
Q ss_pred cccceeEeccC-CCch----hhhhhc-CCCCcceeeecccccccC----ccccccCCCCCCeEEecCCCCCcc----cCC
Q 036119 612 QSLKYLKIEDC-SKLE----SLAERL-DNTSLEEISISVLENLKS----LPADLHNLHHLQKIWIFGCPNLES----FPE 677 (839)
Q Consensus 612 ~~L~~L~l~~~-~~l~----~~~~~~-~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~ 677 (839)
++|++|++++| ..-. .+...+ ..++|++|+|++|.+... +...+...++|++|++++|.+... +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 45777777777 3322 122222 237788888888877542 233445667889999998876543 334
Q ss_pred CCCCCCCcceEec--cccccccc----ccccCcccccccccccccccCC
Q 036119 678 EGLPSTKLTELTI--YDCENLKA----LPNCMHNLTSLLNLKISECPSV 720 (839)
Q Consensus 678 ~~~~~~~L~~L~l--~~~~~l~~----lp~~l~~l~~L~~L~l~~~~~~ 720 (839)
.+...++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4555678999999 77765432 3445666788999999888753
No 165
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.07 E-value=0.0015 Score=68.61 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=100.7
Q ss_pred CcEEEEEeccCCCC---hhhHhhhhcccCCCCCCCEEEEEecChHHHHHh-----------C-CCCeEeCCCCCcccccC
Q 036119 9 KKFLLVLDDVWNEN---YSRWSELSCPFGAGAAGSKIVVTTRNLVVAERM-----------G-ADPVYQLKELSDDDCLD 73 (839)
Q Consensus 9 k~~LlvLDdv~~~~---~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~-----------~-~~~~~~~~~l~~~~~~~ 73 (839)
++++||+||+...+ ..+|..+...+....++.++|+|+|.......+ + ....+++.+|+.+|+.+
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~ 216 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIE 216 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHH
Confidence 48999999994421 123333333222223478999999987654322 1 12479999999999874
Q ss_pred cCCC------chHHHHHHHHHHHhCCChHHHHHHHHHhcCCCChhHHHH-HHhc-------cccccCCCCCcchhchhhh
Q 036119 74 FTRH------QSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEF-VLKT-------DIWNLRDSDILPALRLKQC 139 (839)
Q Consensus 74 ~~~~------~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~-~~~~-------~~~~~~~~~~~~~l~~k~~ 139 (839)
+... ....+. .+|++.++|.|.++..++..+....+...|-. ..+. ...+.......-.-..+..
T Consensus 217 ~l~~~~~~~~~~~~~~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 295 (357)
T 2fna_A 217 FLRRGFQEADIDFKDY-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNI 295 (357)
T ss_dssp HHHHHHHHHTCCCCCH-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHcCCCCCcH-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHH
Confidence 3211 001112 78999999999999999877643223333321 1110 0000000000000014455
Q ss_pred hhhhccCCCCcccChhHHHHHHH-HcCCCcccCCCCCHHHHHHHHHHHHHhccccccccCCCcceee-cHHHHHH
Q 036119 140 FAYSSLFPKDYEFQDEEIILLWT-AEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSYDASRFVM-HDLINDL 212 (839)
Q Consensus 140 f~~~a~f~~~~~~~~~~li~~w~-~~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~m-Hdlv~~l 212 (839)
+..+|. +. +...+..... ..|. ..-......+++.|++.+++.... +.|.+ |.++++.
T Consensus 296 l~~la~---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~ 355 (357)
T 2fna_A 296 MRTLSK---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLA 355 (357)
T ss_dssp HHHHTT---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHH
T ss_pred HHHHHc---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHh
Confidence 566665 21 3333333221 1221 001244667899999999997652 45664 6777764
No 166
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.03 E-value=0.00025 Score=69.86 Aligned_cols=64 Identities=11% Similarity=0.043 Sum_probs=26.3
Q ss_pred CCCCCeEEecCCCCCc--ccCCCCCCCCCcceEecccccccccccccCcccc--cccccccccccCCccC
Q 036119 658 LHHLQKIWIFGCPNLE--SFPEEGLPSTKLTELTIYDCENLKALPNCMHNLT--SLLNLKISECPSVVSF 723 (839)
Q Consensus 658 l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~--~L~~L~l~~~~~~~~~ 723 (839)
+++|+.|+|++|.+.. .+|..+..+++|+.|+|++|.+.+ + ..+..+. +|++|++++|++...+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCcccc
Confidence 4444444444444332 222222334445555554443322 1 1122222 5555555555554433
No 167
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.41 E-value=0.0051 Score=66.00 Aligned_cols=186 Identities=10% Similarity=-0.027 Sum_probs=97.2
Q ss_pred CCcEEEEEeccCCC------ChhhHhhhhcccCCC---C--CCCEEEEEecChHHHHHhC---------CCCeEeCCCCC
Q 036119 8 GKKFLLVLDDVWNE------NYSRWSELSCPFGAG---A--AGSKIVVTTRNLVVAERMG---------ADPVYQLKELS 67 (839)
Q Consensus 8 ~k~~LlvLDdv~~~------~~~~~~~l~~~~~~~---~--~gs~iivTtr~~~v~~~~~---------~~~~~~~~~l~ 67 (839)
+++++||+||+|.- ....+..+...+... + .+..||+|||+.++...+. ....+++++++
T Consensus 137 ~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~ 216 (412)
T 1w5s_A 137 NHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYK 216 (412)
T ss_dssp TCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCC
T ss_pred CCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCC
Confidence 67999999999652 123444443333211 2 3455888988766432211 12349999999
Q ss_pred cccccCcCC--------Cc-hHHHHHHHHHHHhC------CChHHHHHHHH-Hh-----cCC--CChhHHHHHHhccc-c
Q 036119 68 DDDCLDFTR--------HQ-SLKEVGEQIVIKCG------GLPLAAKTLGG-LL-----RGR--DDPRDWEFVLKTDI-W 123 (839)
Q Consensus 68 ~~~~~~~~~--------~~-~~~~~~~~i~~~c~------glPlal~~~g~-~L-----~~~--~~~~~w~~~~~~~~-~ 123 (839)
.+|+++++. .. --.+....+++.++ |.|..+..+.. +. .+. .+.+.+..+..... .
T Consensus 217 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~ 296 (412)
T 1w5s_A 217 SRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAA 296 (412)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc
Confidence 999884431 11 12467788999999 99965444432 21 122 24455655554322 1
Q ss_pred ccCCCCCcchhc--hhhhhhhhccCC--CCcccChhHHHHHHHHcC--CCcccCCCCCHHHHHHHHHHHHHhcccccccc
Q 036119 124 NLRDSDILPALR--LKQCFAYSSLFP--KDYEFQDEEIILLWTAEG--FLDQEYNGRKMEDLGREFVRELHSRSLFQQSS 197 (839)
Q Consensus 124 ~~~~~~~~~~l~--~k~~f~~~a~f~--~~~~~~~~~li~~w~~~g--~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 197 (839)
..-. ..+..+. .+.++..+|.+. .+..+...++...+.... ... ....-......++++|.+.+++....
T Consensus 297 ~~~~-~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 297 SIQT-HELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYN---VKPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp ---C-CSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSC---CCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred chHH-HHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcC---CCCCCHHHHHHHHHHHHhCCCEEeec
Confidence 1100 1111222 455555566443 223445555554442110 110 00011244567899999999997653
No 168
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.87 E-value=0.012 Score=57.51 Aligned_cols=97 Identities=12% Similarity=0.061 Sum_probs=67.6
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHH-HHh-CCCCeEeCCCCCcccccCcCC-------C
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVA-ERM-GADPVYQLKELSDDDCLDFTR-------H 77 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~-~~~-~~~~~~~~~~l~~~~~~~~~~-------~ 77 (839)
.+++.+||+||++.-+...++.+...+.....+.++|+||+..... ... .-...+++++++.+|...+.. .
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~ 203 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 203 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 4578999999996655566777777666556678999999775422 111 223589999999998873221 1
Q ss_pred chHHHHHHHHHHHhCCChHHHHHHHH
Q 036119 78 QSLKEVGEQIVIKCGGLPLAAKTLGG 103 (839)
Q Consensus 78 ~~~~~~~~~i~~~c~glPlal~~~g~ 103 (839)
.--.+....++++|+|.|..+..+..
T Consensus 204 ~~~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 204 AHEPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11245678899999999988776654
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.89 E-value=0.12 Score=44.38 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=33.4
Q ss_pred EEEeCCCcccc--cccccccCcCcCcEeEecCccccccccCC-CCCCccccCCCccEEeccCc
Q 036119 298 VFSLCGYRNIF--NLPNEIGNLKHLRCLNLSRTKWEEWIPCG-AGQEVDEVFPKLRTLSLDNC 357 (839)
Q Consensus 298 ~L~L~~~~~~~--~lp~~i~~L~~L~~L~L~~~~~~~~~p~~-~~~~~~~~l~~L~~L~L~~~ 357 (839)
+++.+++. ++ .+|..+. .+|++|+|++|.|.. +|.+ +.. +++|++|+|++|
T Consensus 12 ~v~Cs~~~-L~~~~vP~~lp--~~l~~L~Ls~N~l~~-l~~~~f~~-----l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAFP--VDTTELVLTGNNLTA-LPPGLLDA-----LPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSC-CCTTTSCSCCC--TTCSEEECTTSCCSS-CCTTTGGG-----CTTCCEEECCSS
T ss_pred EEEeCCCC-CccccCCCCCC--cCCCEEECCCCcCCc-cChhhhhh-----ccccCEEEecCC
Confidence 56677776 66 7776432 467888888888744 4433 233 777778877776
No 170
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.23 E-value=0.16 Score=48.52 Aligned_cols=93 Identities=11% Similarity=0.073 Sum_probs=60.4
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHHH-HHh-CCCCeEeCCCCCcccccCcCC-------Cc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVVA-ERM-GADPVYQLKELSDDDCLDFTR-------HQ 78 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~-~~~-~~~~~~~~~~l~~~~~~~~~~-------~~ 78 (839)
+++.+||+||++.-....++.+...+.....+.++|+||+...-. ... .-...+++++++.++...+.. ..
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 678999999996654455666666555556678999999875421 111 112389999999888763211 11
Q ss_pred hHHHHHHHHHHHhCCChHHHHH
Q 036119 79 SLKEVGEQIVIKCGGLPLAAKT 100 (839)
Q Consensus 79 ~~~~~~~~i~~~c~glPlal~~ 100 (839)
--.+....+++.++|.|-.+..
T Consensus 181 ~~~~~~~~l~~~~~g~~r~l~~ 202 (226)
T 2chg_A 181 ITEDGLEALIYISGGDFRKAIN 202 (226)
T ss_dssp BCHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHH
Confidence 1235666788888998875443
No 171
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.81 E-value=0.19 Score=43.13 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=13.8
Q ss_pred CcceEecccccccccccccCccccccccccccccc
Q 036119 684 KLTELTIYDCENLKALPNCMHNLTSLLNLKISECP 718 (839)
Q Consensus 684 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 718 (839)
+|+.|+|++|.+...-+..|..+++|+.|+|++|+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 45555555443222112223334444444444443
No 172
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.87 E-value=0.092 Score=48.58 Aligned_cols=35 Identities=14% Similarity=0.036 Sum_probs=16.1
Q ss_pred CCcceEecccccccc----cccccCcccccccccccccc
Q 036119 683 TKLTELTIYDCENLK----ALPNCMHNLTSLLNLKISEC 717 (839)
Q Consensus 683 ~~L~~L~l~~~~~l~----~lp~~l~~l~~L~~L~l~~~ 717 (839)
++|++|+|++|.+.. .+...+..-+.|++|+|++|
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 455555555554321 12233334445555555543
No 173
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.32 E-value=0.46 Score=48.42 Aligned_cols=97 Identities=16% Similarity=0.148 Sum_probs=63.2
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHH-HHHh-CCCCeEeCCCCCcccccCcCC-------C
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVV-AERM-GADPVYQLKELSDDDCLDFTR-------H 77 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v-~~~~-~~~~~~~~~~l~~~~~~~~~~-------~ 77 (839)
.+++.+||+||++.-....++.+...+....+++++|+||+...- .... .-...+++++++.++...... .
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 184 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV 184 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC
Confidence 456899999999765445566666655555567889998877532 2222 122489999999998763221 1
Q ss_pred chHHHHHHHHHHHhCCChH-HHHHHHH
Q 036119 78 QSLKEVGEQIVIKCGGLPL-AAKTLGG 103 (839)
Q Consensus 78 ~~~~~~~~~i~~~c~glPl-al~~~g~ 103 (839)
.--.+....+++.++|.|- |+..+..
T Consensus 185 ~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 185 KYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1123567789999999994 4555543
No 174
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.26 E-value=0.38 Score=44.46 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=20.8
Q ss_pred HHHhcCCCceeEEEeCCC-ccccc-----ccccccCcCcCcEeEecCccc
Q 036119 287 QMLLNHLPRLRVFSLCGY-RNIFN-----LPNEIGNLKHLRCLNLSRTKW 330 (839)
Q Consensus 287 ~~~~~~l~~L~~L~L~~~-~~~~~-----lp~~i~~L~~L~~L~L~~~~~ 330 (839)
...+.+-+.|+.|+|+++ . ++. +-+.+..-..|+.|+|++|.+
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~-igd~ga~~la~aL~~N~~L~~L~L~~n~i 82 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKR-VSKERIRSLIEAACNSKHIEKFSLANTAI 82 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCS-SCHHHHHHHHHHHTTCSCCCEEECTTSCC
T ss_pred HHHHhcCCCccEEECCCCCC-CCHHHHHHHHHHHhhCCCcCEEEccCCCC
Confidence 334444455555555553 3 322 223344445555555555554
No 175
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.75 E-value=0.65 Score=47.32 Aligned_cols=184 Identities=13% Similarity=0.027 Sum_probs=89.9
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCC------------------CCCCEEEEEecChHHH-HHh--CCCCeEeCCCC
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAG------------------AAGSKIVVTTRNLVVA-ERM--GADPVYQLKEL 66 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~------------------~~gs~iivTtr~~~v~-~~~--~~~~~~~~~~l 66 (839)
.+..+|++||+..-.....+.+...+... .++.++|.||...... ... +....++++++
T Consensus 89 ~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~ 168 (324)
T 1hqc_A 89 EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYY 168 (324)
T ss_dssp CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCC
T ss_pred cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCC
Confidence 36679999999554333333333222111 1345677777654321 111 12347899999
Q ss_pred CcccccCcC-------CCchHHHHHHHHHHHhCCChHHHHHHHHHhc------CC--CChhHHHHHHhccccccCCCCCc
Q 036119 67 SDDDCLDFT-------RHQSLKEVGEQIVIKCGGLPLAAKTLGGLLR------GR--DDPRDWEFVLKTDIWNLRDSDIL 131 (839)
Q Consensus 67 ~~~~~~~~~-------~~~~~~~~~~~i~~~c~glPlal~~~g~~L~------~~--~~~~~w~~~~~~~~~~~~~~~~~ 131 (839)
+.+|...+. ...--.+....+++++.|.|-.+..+...+. +. -+.+....++.... .... ..
T Consensus 169 ~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~--~~~~-~l 245 (324)
T 1hqc_A 169 TPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALG--LDEL-GL 245 (324)
T ss_dssp CHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHT--CCTT-CC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--cccc-CC
Confidence 988865211 1111246678899999999987765544332 11 24455555544211 0000 00
Q ss_pred chhchhhhhhhhc-cCCCC----------cccChhHH----HHHHHHcCCCcccCCCCCHHHHHHHHHH-HHHhcccccc
Q 036119 132 PALRLKQCFAYSS-LFPKD----------YEFQDEEI----ILLWTAEGFLDQEYNGRKMEDLGREFVR-ELHSRSLFQQ 195 (839)
Q Consensus 132 ~~l~~k~~f~~~a-~f~~~----------~~~~~~~l----i~~w~~~g~~~~~~~~~~~e~~~~~~~~-~L~~~~ll~~ 195 (839)
+.. .+..+...+ .|..+ ..+.+..+ -++-+..|++.....+..+.+.|.+|++ ++.+|+++|+
T Consensus 246 ~~~-e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 246 EKR-DREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp CHH-HHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred CHH-HHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 000 111111111 11000 12333322 2345667888765666777888888887 8888888874
No 176
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=87.74 E-value=2.6 Score=44.00 Aligned_cols=201 Identities=14% Similarity=0.027 Sum_probs=104.1
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCC-C---CCCEEEEEecChHHHHHhC-------CCCeEeCCCCCcccccCcC-
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAG-A---AGSKIVVTTRNLVVAERMG-------ADPVYQLKELSDDDCLDFT- 75 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~-~---~gs~iivTtr~~~v~~~~~-------~~~~~~~~~l~~~~~~~~~- 75 (839)
+++.+||+||++.-+...++.+...+... . .+..||+||++.+...... ....+++++++.++...+.
T Consensus 124 ~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~ 203 (389)
T 1fnn_A 124 DLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILL 203 (389)
T ss_dssp TCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHH
T ss_pred CCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHH
Confidence 56889999999665445556665555432 1 4778888988775443221 1137999999998866221
Q ss_pred -------CCch-HHHHHHHHHHHh---------CCChH-HHHHHHHHhc-----CC--CChhHHHHHHhccccccCCCCC
Q 036119 76 -------RHQS-LKEVGEQIVIKC---------GGLPL-AAKTLGGLLR-----GR--DDPRDWEFVLKTDIWNLRDSDI 130 (839)
Q Consensus 76 -------~~~~-~~~~~~~i~~~c---------~glPl-al~~~g~~L~-----~~--~~~~~w~~~~~~~~~~~~~~~~ 130 (839)
.... -.+....+++++ +|.|- |+..+..+.. +. .+.+....+.... ....+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~----~~~~~ 279 (389)
T 1fnn_A 204 DRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV----LFGIS 279 (389)
T ss_dssp HHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----SCCCC
T ss_pred HHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH----hhhhH
Confidence 1111 235677788888 78874 3333332221 22 1334444444321 11112
Q ss_pred cchhc-----hhhhhhhhccCC---CCcccChhHHHHHHHH----cCCCcccCCCCCHHHHHHHHHHHHHhccccccccC
Q 036119 131 LPALR-----LKQCFAYSSLFP---KDYEFQDEEIILLWTA----EGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSY 198 (839)
Q Consensus 131 ~~~l~-----~k~~f~~~a~f~---~~~~~~~~~li~~w~~----~g~~~~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~ 198 (839)
...++ .+..+..++.+. .+..+....+...+.. .|... --......++.+|.+++++.....
T Consensus 280 ~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 280 EEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERP------RVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCC------CCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCC------CCHHHHHHHHHHHHhCCCeEEeee
Confidence 22222 233333333222 2213444555554433 22111 112456788999999999987532
Q ss_pred -----CCcce-------eecHHHHHHHHHHcc
Q 036119 199 -----DASRF-------VMHDLINDLARWAAG 218 (839)
Q Consensus 199 -----~~~~~-------~mHdlv~~la~~i~~ 218 (839)
..+.+ ..||++..+...+..
T Consensus 354 ~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~ 385 (389)
T 1fnn_A 354 KRGEGVRGRTTLISIGTEPLDTLEAVITKLIK 385 (389)
T ss_dssp ---------CEEEECCSSCHHHHHHHHHHHHH
T ss_pred ccCCCCCCceeEEEeCCCHHHHHHHHHHHHHH
Confidence 11111 246777766655443
No 177
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.09 E-value=1.2 Score=46.69 Aligned_cols=114 Identities=14% Similarity=0.050 Sum_probs=64.9
Q ss_pred hhhcCCCcEEEEEeccCCCCh----hh-HhhhhcccCCCCCCCEEEEEecChHH----HHHh--CCCCeEeCCCCCcccc
Q 036119 3 KKQLFGKKFLLVLDDVWNENY----SR-WSELSCPFGAGAAGSKIVVTTRNLVV----AERM--GADPVYQLKELSDDDC 71 (839)
Q Consensus 3 ~~~l~~k~~LlvLDdv~~~~~----~~-~~~l~~~~~~~~~gs~iivTtr~~~v----~~~~--~~~~~~~~~~l~~~~~ 71 (839)
.+.++.++.+||+||++.-.. .. +..+.... .+.+||+||+.... .... .....+++++++.++.
T Consensus 127 ~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~ 202 (384)
T 2qby_B 127 KNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQL 202 (384)
T ss_dssp HHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHH
T ss_pred HHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHH
Confidence 345666666999999954211 11 22333222 67899999987531 1111 2223899999999987
Q ss_pred cCcC--------CCch-HHHHHHHHHHHhC---CChH-HHHHHHHHh--c-C--CCChhHHHHHHhc
Q 036119 72 LDFT--------RHQS-LKEVGEQIVIKCG---GLPL-AAKTLGGLL--R-G--RDDPRDWEFVLKT 120 (839)
Q Consensus 72 ~~~~--------~~~~-~~~~~~~i~~~c~---glPl-al~~~g~~L--~-~--~~~~~~w~~~~~~ 120 (839)
..+. .... -.+....++++++ |.|- |+..+..+. . + .-+.++++.++..
T Consensus 203 ~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 203 KFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVD 269 (384)
T ss_dssp HHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 7221 1111 1255667777777 8876 444443322 1 2 2367777777664
No 178
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=82.71 E-value=2.1 Score=43.45 Aligned_cols=94 Identities=12% Similarity=0.081 Sum_probs=60.8
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHH-HHHhC-CCCeEeCCCCCcccccCcC-------CCc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVV-AERMG-ADPVYQLKELSDDDCLDFT-------RHQ 78 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v-~~~~~-~~~~~~~~~l~~~~~~~~~-------~~~ 78 (839)
+++.+||+||++.-....++.+...+.....+.++|+||....- ..... -...++++++++++..... ...
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 188 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 67889999999765555666676666555667899999876532 11111 1137899999988866211 111
Q ss_pred hHHHHHHHHHHHhCCChHHHHHH
Q 036119 79 SLKEVGEQIVIKCGGLPLAAKTL 101 (839)
Q Consensus 79 ~~~~~~~~i~~~c~glPlal~~~ 101 (839)
--.+....+++.++|.|-.+..+
T Consensus 189 ~~~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 189 LTEEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp ECHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHH
Confidence 12356677888899998755443
No 179
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=75.58 E-value=1.8 Score=45.12 Aligned_cols=113 Identities=12% Similarity=-0.040 Sum_probs=60.1
Q ss_pred CCCcEEEEEeccCCCC-----hhhHhhhhcccCCC--CCCCEEEEEecChH--------HHHHhCCCCeEeCCCCCcccc
Q 036119 7 FGKKFLLVLDDVWNEN-----YSRWSELSCPFGAG--AAGSKIVVTTRNLV--------VAERMGADPVYQLKELSDDDC 71 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~-----~~~~~~l~~~~~~~--~~gs~iivTtr~~~--------v~~~~~~~~~~~~~~l~~~~~ 71 (839)
.+++++||+||+..-. +..+..+....... ..+..+|.||+... +...++ ...+++++++.++.
T Consensus 128 ~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~ 206 (387)
T 2v1u_A 128 LRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQL 206 (387)
T ss_dssp SCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHH
T ss_pred cCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHH
Confidence 3568999999995421 12223333322221 45678888887652 222221 13789999998887
Q ss_pred cCcC--------CCch-HHHHHHHHHHHhC---CCh-HHHHHHHHHhc-----CC--CChhHHHHHHhc
Q 036119 72 LDFT--------RHQS-LKEVGEQIVIKCG---GLP-LAAKTLGGLLR-----GR--DDPRDWEFVLKT 120 (839)
Q Consensus 72 ~~~~--------~~~~-~~~~~~~i~~~c~---glP-lal~~~g~~L~-----~~--~~~~~w~~~~~~ 120 (839)
..+. .... -.+....++++++ |.| .|+.++..+.. ++ .+.++++.++..
T Consensus 207 ~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~ 275 (387)
T 2v1u_A 207 RDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAE 275 (387)
T ss_dssp HHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 6221 1111 1245667777777 999 44443333221 22 256677766653
No 180
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=73.89 E-value=4.7 Score=41.72 Aligned_cols=95 Identities=13% Similarity=0.071 Sum_probs=58.7
Q ss_pred CCCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChHH-HHHh-CCCCeEeCCCCCcccccCcC-------CC
Q 036119 7 FGKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLVV-AERM-GADPVYQLKELSDDDCLDFT-------RH 77 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v-~~~~-~~~~~~~~~~l~~~~~~~~~-------~~ 77 (839)
.+++.+||+||+..-....++.+...+.....+..+|++|....- .... .-...+++++++.++..... ..
T Consensus 117 ~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~ 196 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 (373)
T ss_dssp SSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 356789999999554444566666666555556788888875432 1211 12258899999988765211 11
Q ss_pred chHHHHHHHHHHHhCCChHHHHHH
Q 036119 78 QSLKEVGEQIVIKCGGLPLAAKTL 101 (839)
Q Consensus 78 ~~~~~~~~~i~~~c~glPlal~~~ 101 (839)
.--.+....+++.++|.|..+..+
T Consensus 197 ~~~~~a~~~l~~~~~G~~r~~~~~ 220 (373)
T 1jr3_A 197 AHEPRALQLLARAAEGSLRDALSL 220 (373)
T ss_dssp CBCHHHHHHHHHHSSSCHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCHHHHHHH
Confidence 112345667888888888766544
No 181
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=72.70 E-value=11 Score=37.87 Aligned_cols=90 Identities=10% Similarity=0.096 Sum_probs=54.6
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChH-HHHHh-CCCCeEeCCCCCcccccCcC-------CCc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLV-VAERM-GADPVYQLKELSDDDCLDFT-------RHQ 78 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~~~~l~~~~~~~~~-------~~~ 78 (839)
+++.++|+||+..-.....+.+...+.....+.++|+||.... +.... .-...+++++++.++..... ...
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 6688999999965444456667776666667788888887654 22221 11247889888887754110 111
Q ss_pred hHHHHHHHHHHHhCCChHH
Q 036119 79 SLKEVGEQIVIKCGGLPLA 97 (839)
Q Consensus 79 ~~~~~~~~i~~~c~glPla 97 (839)
--.+....+++.++|.+-.
T Consensus 181 i~~~~l~~l~~~~~G~~r~ 199 (319)
T 2chq_A 181 ITEDGLEALIYISGGDFRK 199 (319)
T ss_dssp BCHHHHHHHHHTTTTCHHH
T ss_pred CCHHHHHHHHHHcCCCHHH
Confidence 1124455566666666653
No 182
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=69.31 E-value=2.7 Score=43.84 Aligned_cols=112 Identities=11% Similarity=-0.008 Sum_probs=61.9
Q ss_pred CCcEEEEEeccCCCC----hhhHhhhhcccCC-CCCCCEEEEEecChHHHHHhC------CC-CeEeCCCCCcccccCcC
Q 036119 8 GKKFLLVLDDVWNEN----YSRWSELSCPFGA-GAAGSKIVVTTRNLVVAERMG------AD-PVYQLKELSDDDCLDFT 75 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~----~~~~~~l~~~~~~-~~~gs~iivTtr~~~v~~~~~------~~-~~~~~~~l~~~~~~~~~ 75 (839)
+++.+||+||++.-. ...+..+...+.. ...+..+|+||++......+. .. ..+++++++.+|...+.
T Consensus 127 ~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il 206 (386)
T 2qby_A 127 GSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDIL 206 (386)
T ss_dssp CSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHH
T ss_pred CCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHH
Confidence 458999999995421 2334444333321 234567788888764322211 11 48999999999877322
Q ss_pred C---------CchHHHHHHHHHHHhC---CChH-HHHHHHHHhc-----C--CCChhHHHHHHh
Q 036119 76 R---------HQSLKEVGEQIVIKCG---GLPL-AAKTLGGLLR-----G--RDDPRDWEFVLK 119 (839)
Q Consensus 76 ~---------~~~~~~~~~~i~~~c~---glPl-al~~~g~~L~-----~--~~~~~~w~~~~~ 119 (839)
. ..--.+....+++.++ |.|- |+.++..+.. + ..+.++++.++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~ 270 (386)
T 2qby_A 207 TKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKE 270 (386)
T ss_dssp HHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 1 1122456667777777 9987 4443333221 2 225566665554
No 183
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=60.50 E-value=37 Score=32.95 Aligned_cols=112 Identities=13% Similarity=0.016 Sum_probs=55.9
Q ss_pred CCCcEEEEEeccCCC---------ChhhH-hhhhcccC---CCCCCCEEEEEecChHHHHHhCC----CCeEeCCCCCc-
Q 036119 7 FGKKFLLVLDDVWNE---------NYSRW-SELSCPFG---AGAAGSKIVVTTRNLVVAERMGA----DPVYQLKELSD- 68 (839)
Q Consensus 7 ~~k~~LlvLDdv~~~---------~~~~~-~~l~~~~~---~~~~gs~iivTtr~~~v~~~~~~----~~~~~~~~l~~- 68 (839)
+.+..+|++||+..- .+..+ +.+...+. ..+.+..||.||...+....+.. ...++++++++
T Consensus 122 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r 201 (272)
T 1d2n_A 122 KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATG 201 (272)
T ss_dssp TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEH
T ss_pred hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHH
Confidence 456889999998321 01111 22222222 23445567888888877665322 34688888877
Q ss_pred ccccCcCC--CchHHHHHHHHHHHhCC------ChHHHHHHHHHhcCCCChhHHHHHHh
Q 036119 69 DDCLDFTR--HQSLKEVGEQIVIKCGG------LPLAAKTLGGLLRGRDDPRDWEFVLK 119 (839)
Q Consensus 69 ~~~~~~~~--~~~~~~~~~~i~~~c~g------lPlal~~~g~~L~~~~~~~~w~~~~~ 119 (839)
++...+.. ..--.+....+++.+.| ++-++.++-.+-... ....|+.++.
T Consensus 202 ~~i~~i~~~~~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-~~~~~~~~~~ 259 (272)
T 1d2n_A 202 EQLLEALELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-PEYRVRKFLA 259 (272)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-GGGHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-hHHHHHHHHH
Confidence 33321110 00013445566667666 444444444332221 3345555443
No 184
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=55.89 E-value=5.6 Score=37.92 Aligned_cols=90 Identities=18% Similarity=0.133 Sum_probs=46.4
Q ss_pred CcEEEEEeccCCCChhh--HhhhhcccCC-CCCC-CEEEEEecC---------hHHHHHhCCCCeEeCCCCCcccccCcC
Q 036119 9 KKFLLVLDDVWNENYSR--WSELSCPFGA-GAAG-SKIVVTTRN---------LVVAERMGADPVYQLKELSDDDCLDFT 75 (839)
Q Consensus 9 k~~LlvLDdv~~~~~~~--~~~l~~~~~~-~~~g-s~iivTtr~---------~~v~~~~~~~~~~~~~~l~~~~~~~~~ 75 (839)
+..+||+||+..-.... .+.+...+.. ...| .+||+||+. ..+...+.....+++++++.++...+.
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l 183 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAAL 183 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHH
Confidence 45789999995432222 2223222211 1122 258888763 333333333368999999988865211
Q ss_pred -------CCchHHHHHHHHHHHhCCChHHH
Q 036119 76 -------RHQSLKEVGEQIVIKCGGLPLAA 98 (839)
Q Consensus 76 -------~~~~~~~~~~~i~~~c~glPlal 98 (839)
...--.+....+++.++|.+-.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l 213 (242)
T 3bos_A 184 QRRAAMRGLQLPEDVGRFLLNRMARDLRTL 213 (242)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHccCCHHHH
Confidence 01111345556666666666443
No 185
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=54.91 E-value=11 Score=38.11 Aligned_cols=93 Identities=12% Similarity=0.028 Sum_probs=58.3
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChH-HHHHhCC-CCeEeCCCCCcccccCcCCC--chHHHH
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLV-VAERMGA-DPVYQLKELSDDDCLDFTRH--QSLKEV 83 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~~~~-~~~~~~~~l~~~~~~~~~~~--~~~~~~ 83 (839)
+++-++|+|++..-.....+.+...+....++..+|++|.+.+ +...... ...++++++++++....... .--.+.
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~~~~~~ 186 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTMSQDA 186 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCCCCHHH
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcCCCHHH
Confidence 5678899999955444445666666665556788888887653 4433322 24899999988886521100 111244
Q ss_pred HHHHHHHhCCChHHHHH
Q 036119 84 GEQIVIKCGGLPLAAKT 100 (839)
Q Consensus 84 ~~~i~~~c~glPlal~~ 100 (839)
+..+++.++|-|..+..
T Consensus 187 ~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 187 LLAALRLSAGSPGAALA 203 (334)
T ss_dssp HHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 56788888888865543
No 186
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=42.58 E-value=20 Score=36.50 Aligned_cols=64 Identities=5% Similarity=0.062 Sum_probs=39.2
Q ss_pred CcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChH-HHHHhC-CCCeEeCCCCCccccc
Q 036119 9 KKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLV-VAERMG-ADPVYQLKELSDDDCL 72 (839)
Q Consensus 9 k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~~~-~~~~~~~~~l~~~~~~ 72 (839)
+.-++|+|++..-+....+.+...+....++.++|++|.+.+ +..... -...+++++++.++..
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~ 199 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEIS 199 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHH
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHH
Confidence 666999999965444444555555443345678888887632 222221 1257888888877753
No 187
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=39.80 E-value=51 Score=33.30 Aligned_cols=65 Identities=12% Similarity=-0.022 Sum_probs=43.1
Q ss_pred CCCcEEEEEeccCC-CChhhHhhhhcccCCCCCCCEEEEEecC-------hHHHHHhCCC-CeEeCCCCCcccc
Q 036119 7 FGKKFLLVLDDVWN-ENYSRWSELSCPFGAGAAGSKIVVTTRN-------LVVAERMGAD-PVYQLKELSDDDC 71 (839)
Q Consensus 7 ~~k~~LlvLDdv~~-~~~~~~~~l~~~~~~~~~gs~iivTtr~-------~~v~~~~~~~-~~~~~~~l~~~~~ 71 (839)
.+++-++|+|++.. -....++.+...+..-.+++.+|++|.. +.+....... ..++..++++++.
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l 147 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQL 147 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHH
Confidence 46677889999854 2334567777666655567888887753 3566665433 5788888876664
No 188
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=33.16 E-value=27 Score=36.92 Aligned_cols=88 Identities=19% Similarity=0.143 Sum_probs=47.6
Q ss_pred CcEEEEEeccCCCCh--hhHhhhhcccCC-CCCCCEEEEEecC---------hHHHHHhCCCCeEeCCCCCcccccCcCC
Q 036119 9 KKFLLVLDDVWNENY--SRWSELSCPFGA-GAAGSKIVVTTRN---------LVVAERMGADPVYQLKELSDDDCLDFTR 76 (839)
Q Consensus 9 k~~LlvLDdv~~~~~--~~~~~l~~~~~~-~~~gs~iivTtr~---------~~v~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (839)
+.-+|++||+..-.. ..-+.+...+.. ...|..||+||.. ..+...+.....+++++++.++-..+..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 667999999953221 112233333221 2356789999875 3444445445678888888777541110
Q ss_pred -------CchHHHHHHHHHHHhCCChH
Q 036119 77 -------HQSLKEVGEQIVIKCGGLPL 96 (839)
Q Consensus 77 -------~~~~~~~~~~i~~~c~glPl 96 (839)
..--.+....|++.+.|.+-
T Consensus 274 ~~~~~~~~~i~~e~l~~la~~~~gn~R 300 (440)
T 2z4s_A 274 KMLEIEHGELPEEVLNFVAENVDDNLR 300 (440)
T ss_dssp HHHHHHTCCCCTTHHHHHHHHCCSCHH
T ss_pred HHHHHcCCCCCHHHHHHHHHhcCCCHH
Confidence 00011334556666666663
No 189
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.80 E-value=88 Score=31.45 Aligned_cols=92 Identities=12% Similarity=0.112 Sum_probs=53.1
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecChH-HHHHhC-CCCeEeCCCCCcccccCc-------CCCc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNLV-VAERMG-ADPVYQLKELSDDDCLDF-------TRHQ 78 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~~~-~~~~~~~~~l~~~~~~~~-------~~~~ 78 (839)
+++-+|++|++..-.....+.+...+.......++|++|.... +..... -...+++++++.++.... ....
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 211 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVK 211 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCC
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCC
Confidence 3556999999955433444555555544445677888776543 211111 113788888888876511 1111
Q ss_pred hHHHHHHHHHHHhCCChHHHH
Q 036119 79 SLKEVGEQIVIKCGGLPLAAK 99 (839)
Q Consensus 79 ~~~~~~~~i~~~c~glPlal~ 99 (839)
--.+....+++.++|.|-.+.
T Consensus 212 i~~~~l~~l~~~~~G~~r~~~ 232 (353)
T 1sxj_D 212 CDDGVLERILDISAGDLRRGI 232 (353)
T ss_dssp CCHHHHHHHHHHTSSCHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHH
Confidence 123566778888888876543
No 190
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=26.56 E-value=40 Score=18.46 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=13.9
Q ss_pred CCChHHHHHHHHHhcCC
Q 036119 92 GGLPLAAKTLGGLLRGR 108 (839)
Q Consensus 92 ~glPlal~~~g~~L~~~ 108 (839)
.-+|||..+.++.+..+
T Consensus 9 rklplavav~agv~~aq 25 (28)
T 2vda_B 9 RKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCTHHHHHHHHTTCCC
T ss_pred ccCchHHHHHHHHhHhh
Confidence 46899999999887654
No 191
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=23.70 E-value=31 Score=34.29 Aligned_cols=63 Identities=10% Similarity=0.072 Sum_probs=44.9
Q ss_pred CCcEEEEEeccCCCChhhHhhhhcccCCCCCCCEEEEEecCh-HHHHHhCCCCeEeCCCCCcccc
Q 036119 8 GKKFLLVLDDVWNENYSRWSELSCPFGAGAAGSKIVVTTRNL-VVAERMGADPVYQLKELSDDDC 71 (839)
Q Consensus 8 ~k~~LlvLDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~~~l~~~~~ 71 (839)
+++-++|+|++..-.....+.+...+....+.+++|++|.+. .+....... .++++++++++.
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i 144 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEF 144 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHH
Confidence 567789999996544455666776665555678888877554 555666555 899999988775
Done!