BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036120
(779 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4I0P8|VP35B_ARATH Vacuolar protein sorting-associated protein 35B OS=Arabidopsis
thaliana GN=VPS35B PE=1 SV=1
Length = 790
Score = 1360 bits (3520), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 652/788 (82%), Positives = 717/788 (90%), Gaps = 12/788 (1%)
Query: 3 LSGDEDEEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYE 62
L+G EDE+KWLAEGIAG+QHNAF+MHRALD+NNLRE LKYSA MLSELRTSKLSP KYY+
Sbjct: 4 LAGVEDEDKWLAEGIAGIQHNAFFMHRALDANNLREVLKYSALMLSELRTSKLSPQKYYD 63
Query: 63 LYMRAFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAP 122
LYMRAFD+LR+LE+FFKDESRHG+ ++DLYELVQHAGNILPR+YLLCTVGSVYIKSK+AP
Sbjct: 64 LYMRAFDQLRQLEIFFKDESRHGLPVVDLYELVQHAGNILPRMYLLCTVGSVYIKSKQAP 123
Query: 123 AKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAETVMDAVEFVLQN 182
+K+VLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLP+IGS+YE DA TVMDAVEFVLQN
Sbjct: 124 SKDVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPEIGSDYEGDANTVMDAVEFVLQN 183
Query: 183 FTEMNKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKENVLPRV 242
FTEMNKLWVR+QHQGPG VREK+EKERNELRDLVGKNLHVL QIEGVDLEMYKE VLPRV
Sbjct: 184 FTEMNKLWVRIQHQGPGTVREKQEKERNELRDLVGKNLHVLGQIEGVDLEMYKETVLPRV 243
Query: 243 LEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRL 302
LEQVVNCKD+LAQYYLM+CIIQVFPDEYHLQTLETLL AC QL PTVD K VL++LMDRL
Sbjct: 244 LEQVVNCKDKLAQYYLMECIIQVFPDEYHLQTLETLLAACTQLMPTVDTKIVLTQLMDRL 303
Query: 303 SNYAVSSADVLPEFLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDR 362
SNYA SS DVL EFLQVEAFAKLSNAIGKVID Q++MPIVGA++L+VSLLTFTLRVHPDR
Sbjct: 304 SNYAASSPDVLHEFLQVEAFAKLSNAIGKVIDTQLEMPIVGAMTLFVSLLTFTLRVHPDR 363
Query: 363 LDYVDQVLGACVKKLSSAPKLEDSRATKQVVALLSAPLDKYNDI-----------LMDHL 411
LDYVDQVLGACV KLSS PKLED+RA KQVVALLSAPL+KY+DI +MDHL
Sbjct: 364 LDYVDQVLGACVVKLSSVPKLEDARAMKQVVALLSAPLEKYSDIVTALTLSNYPRVMDHL 423
Query: 412 DDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDEEDFKEEQ 471
DDGTNKVMAM+IIQSIMK +CISTA+KVEVLFELIKGLIKDLD +ELDEEDF+EEQ
Sbjct: 424 DDGTNKVMAMLIIQSIMKTDSCISTADKVEVLFELIKGLIKDLDETNAEELDEEDFQEEQ 483
Query: 472 NSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDG 531
NSVARLIHML N++ EEMLKIIC VR+H+MTGGP+RLPFTVPPLVFSA+RLVRQL++Q G
Sbjct: 484 NSVARLIHMLDNEEPEEMLKIICVVRRHLMTGGPRRLPFTVPPLVFSAVRLVRQLESQGG 543
Query: 532 DVAGEEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQ 591
D+AGE+ ATP+KIFQ+LNQTIE L VP PE+ALRLYLQCAEAA+DCDLEPVAYEFFTQ
Sbjct: 544 DIAGEDS-ATPRKIFQILNQTIEVLTSVPCPELALRLYLQCAEAASDCDLEPVAYEFFTQ 602
Query: 592 AFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRA 651
AFMLYEEEIADSKAQVTAIHLI+GTLQRI+VFG+ENRDTLTHKATGYSARLLKKPDQCRA
Sbjct: 603 AFMLYEEEIADSKAQVTAIHLIVGTLQRINVFGVENRDTLTHKATGYSARLLKKPDQCRA 662
Query: 652 VYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKY 711
VYACSHLFWVDD DGIKDGERVLLCL+RALRIANAAQQMA+ RGSSGPV LFVEILNKY
Sbjct: 663 VYACSHLFWVDDPDGIKDGERVLLCLRRALRIANAAQQMASATRGSSGPVTLFVEILNKY 722
Query: 712 LYFFEKGNTQITASAIQSLIELITSEMQSESTTLDPADNAFFASTKRYIEFQKKKGGAMG 771
+YFFEKGN IT S IQSLIELI +EMQS++ + FF ST RYI+F K+KGG MG
Sbjct: 723 IYFFEKGNPHITPSDIQSLIELINNEMQSDNGNTTIHSDPFFTSTLRYIKFIKQKGGLMG 782
Query: 772 EKYDPINV 779
EKYDPI +
Sbjct: 783 EKYDPIKL 790
>sp|Q7X659|VP35A_ARATH Vacuolar protein sorting-associated protein 35A OS=Arabidopsis
thaliana GN=VPS35A PE=2 SV=1
Length = 787
Score = 1182 bits (3059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/790 (72%), Positives = 680/790 (86%), Gaps = 14/790 (1%)
Query: 1 MMLSGDEDEEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKY 60
M+ G EDEEKWLA G A + NAFYM RA+DSNNL++ALKYSAQMLSELRTSKLSPHKY
Sbjct: 1 MIADGSEDEEKWLAAGAAAFKQNAFYMQRAIDSNNLKDALKYSAQMLSELRTSKLSPHKY 60
Query: 61 YELYMRAFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKE 120
Y+LYMRAFDELRKLE+FF +E+R G S+I+LYELVQHAGNILPRLYLLCT GSVYIK+KE
Sbjct: 61 YDLYMRAFDELRKLEIFFMEETRRGCSVIELYELVQHAGNILPRLYLLCTAGSVYIKTKE 120
Query: 121 APAKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAETVMDAVEFVL 180
APAKE+LKDLVEMCRG+QHP+RGLFLRSYLAQ+SRDKLPDIGSEYE DA+TV+DAVEFVL
Sbjct: 121 APAKEILKDLVEMCRGIQHPLRGLFLRSYLAQISRDKLPDIGSEYEGDADTVIDAVEFVL 180
Query: 181 QNFTEMNKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKENVLP 240
NFTEMNKLWVRMQHQGP R +E+REKER ELRDLVGKNLHVLSQ+EGVDL+MY++ VLP
Sbjct: 181 LNFTEMNKLWVRMQHQGPAREKERREKERGELRDLVGKNLHVLSQLEGVDLDMYRDTVLP 240
Query: 241 RVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMD 300
RVLEQ+VNC+DE+AQYYL+DCIIQVFPDEYHLQTL+ LLGACPQLQ +VDI TVLSRLM+
Sbjct: 241 RVLEQIVNCRDEIAQYYLIDCIIQVFPDEYHLQTLDVLLGACPQLQASVDIMTVLSRLME 300
Query: 301 RLSNYAVSSADVLPEFLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHP 360
RLSNYA +A+VLP FLQVEAF+KL+NAIGKVI+AQ DMPI+ A++LY SLL FTL VHP
Sbjct: 301 RLSNYAALNAEVLPYFLQVEAFSKLNNAIGKVIEAQEDMPILSAVTLYSSLLKFTLHVHP 360
Query: 361 DRLDYVDQVLGACVKKLSSAPKLEDSRATKQVVALLSAPLDKYNDI-----------LMD 409
DRLDY DQVLG+CVK+LS K++D+RATK++V+LLSAPL+KYND+ +++
Sbjct: 361 DRLDYADQVLGSCVKQLSGKGKIDDTRATKELVSLLSAPLEKYNDVVTALKLTNYPLVVE 420
Query: 410 HLDDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDEEDFKE 469
+LD T ++MA VI++SIMKN+T I+TAEKVE LFELIKG+I DLD E+DE+DF+E
Sbjct: 421 YLDTETKRIMATVIVRSIMKNNTLITTAEKVEALFELIKGIINDLDEPQGLEVDEDDFQE 480
Query: 470 EQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQ 529
EQNSVA LIHMLYNDD EEM KI+ ++KH +TGGPKRL FT+PPLV S L+L+R+L +
Sbjct: 481 EQNSVALLIHMLYNDDPEEMFKIVNVLKKHFLTGGPKRLKFTIPPLVVSTLKLIRRLPVE 540
Query: 530 DGDVAGEEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFF 589
+ G+E T KIFQ LNQ IE L VPSP++A RLYLQCAEAA+ CD EP+AYEFF
Sbjct: 541 GDNPFGKEASVTATKIFQFLNQIIEALPNVPSPDLAFRLYLQCAEAADKCDEEPIAYEFF 600
Query: 590 TQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQC 649
TQA++LYEEEI+DSKAQVTA+ LIIGTLQR+ VFG+ENRDTLTHKATGY+A+LLKKPDQC
Sbjct: 601 TQAYILYEEEISDSKAQVTALQLIIGTLQRMQVFGVENRDTLTHKATGYAAKLLKKPDQC 660
Query: 650 RAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILN 709
RAVYACSHLFW++D++ I+DGERVLLCLKRAL+IAN+AQQ+AN ARGS+G V LF+EILN
Sbjct: 661 RAVYACSHLFWLEDRETIQDGERVLLCLKRALKIANSAQQVANTARGSTGSVTLFIEILN 720
Query: 710 KYLYFFEKGNTQITASAIQSLIELITSEMQSESTTLDPADNAFFASTKRYIEFQKKKGGA 769
KYLYF+EKG QIT +++SLI+LI +E ES DP+ +FFA+T ++EFQK+K GA
Sbjct: 721 KYLYFYEKGVPQITVESVESLIKLIKNE---ESMPSDPSAESFFATTLEFMEFQKQKEGA 777
Query: 770 MGEKYDPINV 779
+GE+Y I V
Sbjct: 778 IGERYQAIKV 787
>sp|A8R7K9|VP35C_ARATH Vacuolar protein sorting-associated protein 35C OS=Arabidopsis
thaliana GN=VPS35C PE=2 SV=1
Length = 790
Score = 1108 bits (2867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/787 (68%), Positives = 655/787 (83%), Gaps = 18/787 (2%)
Query: 7 EDEEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYELYMR 66
+D+EKWLA IA V+ NAFYM RA+DSNNL++ALK+SAQMLSELRTSKLSPHKYYELYMR
Sbjct: 4 DDDEKWLAAAIAAVKQNAFYMQRAIDSNNLKDALKFSAQMLSELRTSKLSPHKYYELYMR 63
Query: 67 AFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKEV 126
F+EL LE+FFK+E+ G SI +LYELVQHAGNILPRLYLLCT+GSVYIKSK+ A ++
Sbjct: 64 VFNELGTLEIFFKEETGRGCSIAELYELVQHAGNILPRLYLLCTIGSVYIKSKDVTATDI 123
Query: 127 LKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAETVMDAVEFVLQNFTEM 186
LKDLVEMCR VQHP+RGLFLRSYLAQV+RDKLP IGS+ E D + M+A+EFVLQNFTEM
Sbjct: 124 LKDLVEMCRAVQHPLRGLFLRSYLAQVTRDKLPSIGSDLEGDGDAHMNALEFVLQNFTEM 183
Query: 187 NKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKENVLPRVLEQV 246
NKLWVRMQHQGP R +EKREKERNELRDLVGKNLHVLSQ+EGVDL +Y++ VLPR+LEQV
Sbjct: 184 NKLWVRMQHQGPSREKEKREKERNELRDLVGKNLHVLSQLEGVDLGIYRDTVLPRILEQV 243
Query: 247 VNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRLSNYA 306
VNCKDELAQ YLMDCIIQVFPD++HLQTL+ LLGACPQLQP+VDIKTVLS LM+RLSNYA
Sbjct: 244 VNCKDELAQCYLMDCIIQVFPDDFHLQTLDVLLGACPQLQPSVDIKTVLSGLMERLSNYA 303
Query: 307 VSSADVLPEFLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDRLDYV 366
SS + LP FLQVEAF+KL+ AIGKV++AQ D+P +++LY+ LL FTL V+ DRLDYV
Sbjct: 304 ASSVEALPNFLQVEAFSKLNYAIGKVVEAQADLPAAASVTLYLFLLKFTLHVYSDRLDYV 363
Query: 367 DQVLGACVKKLSSAPKLEDSRATKQVVALLSAPLDKYNDI-----------LMDHLDDGT 415
DQVLG+CV +LS+ KL D +A KQ+VA LSAPL+KYN++ +M++LD T
Sbjct: 364 DQVLGSCVTQLSATGKLCDDKAAKQIVAFLSAPLEKYNNVVTILKLTNYPLVMEYLDRET 423
Query: 416 NKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDEEDFKEEQNSVA 475
NK MA++++QS+ KN+T I+TA++V+ LFEL KGL+KD DG DE+DEEDF+EEQN VA
Sbjct: 424 NKAMAIILVQSVFKNNTHIATADEVDALFELAKGLMKDFDGTIDDEIDEEDFQEEQNLVA 483
Query: 476 RLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDGDVAG 535
RL++ LY DD EEM KII TVRKHI+ GGPKRLP T+PPLVFSAL+L+R+L+ D + G
Sbjct: 484 RLVNKLYIDDPEEMSKIIFTVRKHIVAGGPKRLPLTIPPLVFSALKLIRRLRGGDENPFG 543
Query: 536 EEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFML 595
++ ATPK+I QLL++T+E L V +P++ALRLYLQCA+AAN+C+LE VAYEFFT+A++L
Sbjct: 544 DDASATPKRILQLLSETVEVLSDVSAPDLALRLYLQCAQAANNCELETVAYEFFTKAYLL 603
Query: 596 YEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYAC 655
YEEEI+DSKAQVTA+ LIIGTLQR+ VF +ENRDTLTHKATGYSARLL+KPDQCRAVY C
Sbjct: 604 YEEEISDSKAQVTALRLIIGTLQRMRVFNVENRDTLTHKATGYSARLLRKPDQCRAVYEC 663
Query: 656 SHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARG--SSGPVVLFVEILNKYLY 713
+HLFW D+ + +KDGERV+LCLKRA RIA+A QQMAN +RG S+G V L+VE+LNKYLY
Sbjct: 664 AHLFWADECENLKDGERVVLCLKRAQRIADAVQQMANASRGTSSTGSVSLYVELLNKYLY 723
Query: 714 FFEKGNTQITASAIQSLIELITSEMQSESTTLDPADNAFFASTKRYIEFQKKK-GGAMGE 772
F EKGN Q+T I+SL ELI SE + + +P F ST RYIEFQ+++ G M E
Sbjct: 724 FLEKGNQQVTGDTIKSLAELIKSETKKVESGAEP----FINSTLRYIEFQRQQEDGGMNE 779
Query: 773 KYDPINV 779
KY+ I +
Sbjct: 780 KYEKIKM 786
>sp|Q9EQH3|VPS35_MOUSE Vacuolar protein sorting-associated protein 35 OS=Mus musculus
GN=Vps35 PE=1 SV=1
Length = 796
Score = 609 bits (1570), Expect = e-173, Method: Compositional matrix adjust.
Identities = 361/800 (45%), Positives = 502/800 (62%), Gaps = 42/800 (5%)
Query: 4 SGDEDEEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYEL 63
S +++EK L E I V+ +F M R LD N L +ALK+++ ML ELRTS LSP YYEL
Sbjct: 7 SPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYEL 66
Query: 64 YMRAFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPA 123
YM DEL LE++ DE G + DLYELVQ+AGNI+PRLYLL TVG VY+KS
Sbjct: 67 YMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKSFPQSR 126
Query: 124 KEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAET---VMDAVEFVL 180
K++LKDLVEMCRGVQHP+RGLFLR+YL Q +R+ LPD G D ET + D+++FVL
Sbjct: 127 KDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGE--PTDEETTGDISDSMDFVL 184
Query: 181 QNFTEMNKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKENVLP 240
NF EMNKLWVRMQHQG R REKRE+ER ELR LVG NL LSQ+EGV++E YK+ VL
Sbjct: 185 LNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQIVLT 244
Query: 241 RVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMD 300
+LEQVVNC+D LAQ YLM+CIIQVFPDE+HLQTL L AC +L V++K ++ L+D
Sbjct: 245 GILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALID 304
Query: 301 RLSNYA-VSSADVLPEFLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVH 359
RL+ +A +P +++ F S + VI ++ DMP +SL VSL+ ++ +
Sbjct: 305 RLALFAHREDGPGIPA--EIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCY 362
Query: 360 PDRLDYVDQVLGACVK---KLSSAPKLEDSRATKQVVALLSAPLDKYNDI---------- 406
PDR+DYVD+VL V+ KL+ S +K++ LL P+D YN+I
Sbjct: 363 PDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLKHFH 422
Query: 407 -LMDHLDDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDEE 465
L ++ D + K M+ ++ +++ +T I + ++V+ + L+ LI+D ++ D E
Sbjct: 423 PLFEYFDYESRKSMSCYVLSNVLDYNTEIVSQDQVDSIMNLVSTLIQDQPDQPVEDPDPE 482
Query: 466 DFKEEQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLV-R 524
DF +EQ+ V R IH+L +DD ++ I+ T RKH GG +R+ FT+PPLVF+A +L R
Sbjct: 483 DFADEQSLVGRFIHLLRSDDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFR 542
Query: 525 QLQNQDGDVAGEEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDL--- 581
+N D E++ +KIF +QTI L+ E+ LRL+LQ A AA +
Sbjct: 543 YKENSQMDDKWEKK---CQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENH 599
Query: 582 EPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSAR 641
E VAYEF +QAF LYE+EI+DSKAQ+ AI LIIGT +R+ F EN + L + +++
Sbjct: 600 ETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASK 659
Query: 642 LLKKPDQCRAVYACSHLFWV---DDQDG--IKDGERVLLCLKRALRIANAAQQMANVARG 696
LLKKPDQ RAV C+HLFW D++G + G+RV+ CLK+AL+IAN
Sbjct: 660 LLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCM-------D 712
Query: 697 SSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQS-ESTTLDPADNAFFAS 755
S V LF+EILN+Y+YF+EK N +T + LI+ I ++ + ES+ N F +
Sbjct: 713 PSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHN 772
Query: 756 TKRYIEFQKKKGGAMGEKYD 775
T ++ +++ + G Y+
Sbjct: 773 TLEHLRSRRESPESEGPIYE 792
>sp|Q2HJG5|VPS35_BOVIN Vacuolar protein sorting-associated protein 35 OS=Bos taurus
GN=VPS35 PE=2 SV=1
Length = 796
Score = 608 bits (1569), Expect = e-173, Method: Compositional matrix adjust.
Identities = 361/800 (45%), Positives = 501/800 (62%), Gaps = 42/800 (5%)
Query: 4 SGDEDEEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYEL 63
S +++EK L E I V+ +F M R LD N L +ALK+++ ML ELRTS LSP YYEL
Sbjct: 7 SPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYEL 66
Query: 64 YMRAFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPA 123
YM DEL LE++ DE G + DLYELVQ+AGNI+PRLYLL TVG VY+KS
Sbjct: 67 YMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKSFPQSR 126
Query: 124 KEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAET---VMDAVEFVL 180
K++LKDLVEMCRGVQHP+RGLFLR+YL Q +R+ LPD G D ET + D+++FVL
Sbjct: 127 KDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGE--PTDEETTGDISDSMDFVL 184
Query: 181 QNFTEMNKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKENVLP 240
NF EMNKLWVRMQHQG R REKRE+ER ELR LVG NL LSQ+EGV++E YK+ VL
Sbjct: 185 LNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQIVLT 244
Query: 241 RVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMD 300
+LEQVVNC+D LAQ YLM+CIIQVFPDE+HLQTL L AC +L V++K ++ L+D
Sbjct: 245 GILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALID 304
Query: 301 RLSNYA-VSSADVLPEFLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVH 359
RL+ +A +P ++ F S + VI ++ DMP +SL VSL+ ++ +
Sbjct: 305 RLALFAHREDGPGIPT--DIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCY 362
Query: 360 PDRLDYVDQVLGACVK---KLSSAPKLEDSRATKQVVALLSAPLDKYNDI---------- 406
PDR+DYVD+VL V+ KL+ S +K++ LL P+D YN+I
Sbjct: 363 PDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLKHFH 422
Query: 407 -LMDHLDDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDEE 465
L ++ D + K M+ ++ +++ +T I + ++V+ + L+ LI+D +E D E
Sbjct: 423 PLFEYFDYESRKSMSCYVLSNVLDYNTEIVSQDQVDSIMNLVSTLIQDQPDQPVEEPDPE 482
Query: 466 DFKEEQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLV-R 524
DF +EQ+ V R IH+L ++D ++ I+ T RKH GG +R+ FT+PPLVF+A +L R
Sbjct: 483 DFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFR 542
Query: 525 QLQNQDGDVAGEEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDL--- 581
+N D E++ +KIF +QTI L+ E+ LRL+LQ A AA +
Sbjct: 543 YKENSKVDDKWEKK---CQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENH 599
Query: 582 EPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSAR 641
E VAYEF +QAF LYE+EI+DSKAQ+ AI LIIGT +R+ F EN + L + +++
Sbjct: 600 ETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASK 659
Query: 642 LLKKPDQCRAVYACSHLFWV---DDQDG--IKDGERVLLCLKRALRIANAAQQMANVARG 696
LLKKPDQ RAV C+HLFW D++G + G+RV+ CLK+AL+IAN
Sbjct: 660 LLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCM-------D 712
Query: 697 SSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQS-ESTTLDPADNAFFAS 755
S V LF+EILN+Y+YF+EK N +T + LI+ I ++ + ES+ N F +
Sbjct: 713 PSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHN 772
Query: 756 TKRYIEFQKKKGGAMGEKYD 775
T ++ +++ + G Y+
Sbjct: 773 TLEHLRLRRESPESEGPIYE 792
>sp|Q96QK1|VPS35_HUMAN Vacuolar protein sorting-associated protein 35 OS=Homo sapiens
GN=VPS35 PE=1 SV=2
Length = 796
Score = 607 bits (1566), Expect = e-173, Method: Compositional matrix adjust.
Identities = 360/800 (45%), Positives = 501/800 (62%), Gaps = 42/800 (5%)
Query: 4 SGDEDEEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYEL 63
S +++EK L E I V+ +F M R LD N L +ALK+++ ML ELRTS LSP YYEL
Sbjct: 7 SPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYEL 66
Query: 64 YMRAFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPA 123
YM DEL LE++ DE G + DLYELVQ+AGNI+PRLYLL TVG VY+KS
Sbjct: 67 YMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKSFPQSR 126
Query: 124 KEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAET---VMDAVEFVL 180
K++LKDLVEMCRGVQHP+RGLFLR+YL Q +R+ LPD G D ET + D+++FVL
Sbjct: 127 KDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGE--PTDEETTGDISDSMDFVL 184
Query: 181 QNFTEMNKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKENVLP 240
NF EMNKLWVRMQHQG R REKRE+ER ELR LVG NL LSQ+EGV++E YK+ VL
Sbjct: 185 LNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQIVLT 244
Query: 241 RVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMD 300
+LEQVVNC+D LAQ YLM+CIIQVFPDE+HLQTL L AC +L V++K ++ L+D
Sbjct: 245 GILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALID 304
Query: 301 RLSNYA-VSSADVLPEFLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVH 359
RL+ +A +P ++ F S + VI ++ DMP +SL VSL+ ++ +
Sbjct: 305 RLALFAHREDGPGIPA--DIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCY 362
Query: 360 PDRLDYVDQVLGACVK---KLSSAPKLEDSRATKQVVALLSAPLDKYNDI---------- 406
PDR+DYVD+VL V+ KL+ S +K++ LL P+D YN+I
Sbjct: 363 PDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLKHFH 422
Query: 407 -LMDHLDDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDEE 465
L ++ D + K M+ ++ +++ +T I + ++V+ + L+ LI+D ++ D E
Sbjct: 423 PLFEYFDYESRKSMSCYVLSNVLDYNTEIVSQDQVDSIMNLVSTLIQDQPDQPVEDPDPE 482
Query: 466 DFKEEQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLV-R 524
DF +EQ+ V R IH+L ++D ++ I+ T RKH GG +R+ FT+PPLVF+A +L R
Sbjct: 483 DFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFR 542
Query: 525 QLQNQDGDVAGEEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDL--- 581
+N D E++ +KIF +QTI L+ E+ LRL+LQ A AA +
Sbjct: 543 YKENSKVDDKWEKK---CQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENH 599
Query: 582 EPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSAR 641
E VAYEF +QAF LYE+EI+DSKAQ+ AI LIIGT +R+ F EN + L + +++
Sbjct: 600 ETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASK 659
Query: 642 LLKKPDQCRAVYACSHLFWV---DDQDG--IKDGERVLLCLKRALRIANAAQQMANVARG 696
LLKKPDQ RAV C+HLFW D++G + G+RV+ CLK+AL+IAN
Sbjct: 660 LLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCM-------D 712
Query: 697 SSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQS-ESTTLDPADNAFFAS 755
S V LF+EILN+Y+YF+EK N +T + LI+ I ++ + ES+ N F +
Sbjct: 713 PSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHN 772
Query: 756 TKRYIEFQKKKGGAMGEKYD 775
T ++ +++ + G Y+
Sbjct: 773 TLEHLRLRRESPESEGPIYE 792
>sp|Q54C24|VPS35_DICDI Vacuolar sorting protein 35 OS=Dictyostelium discoideum GN=vps35
PE=3 SV=1
Length = 781
Score = 597 bits (1539), Expect = e-169, Method: Compositional matrix adjust.
Identities = 338/784 (43%), Positives = 498/784 (63%), Gaps = 37/784 (4%)
Query: 3 LSGDEDEEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYE 62
LS +E++ K+ E V +M +LD++ L +ALKY++ +++ELRTS LSP YY
Sbjct: 13 LSPEEEQAKFFEEAKNNVMIQGHHMKLSLDNSKLMDALKYASNIINELRTSLLSPKSYYA 72
Query: 63 LYMRAFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAP 122
LY+ AFD L+ L + +E +HG +I+LYE+VQHAGN+LPRLYLL TVGSVYIK+K+AP
Sbjct: 73 LYLVAFDYLQYLNTYLYEE-KHGKKMIELYEVVQHAGNVLPRLYLLITVGSVYIKTKQAP 131
Query: 123 AKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAETVMDAVEFVLQN 182
AK+VLKDL+EMCRGVQHP RGLFLR YL++V++DKLPDI S E TVMD+++F++QN
Sbjct: 132 AKDVLKDLIEMCRGVQHPTRGLFLRHYLSEVTKDKLPDIDSSVENG--TVMDSIDFIIQN 189
Query: 183 FTEMNKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKENVLPRV 242
FTE NKLWVRMQHQ P + RE+RE ER ELR LVGKNL L+Q++GVD + Y E VLP+V
Sbjct: 190 FTETNKLWVRMQHQAPTKDRERRENERLELRLLVGKNLSRLAQLDGVDQKTYSEVVLPKV 249
Query: 243 LEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRL 302
+EQ++NCKD++AQ YLM+ +IQVFPDE+HL TL+ +L C QLQ VD+KT+++ L+DRL
Sbjct: 250 VEQIINCKDKIAQQYLMEILIQVFPDEFHLATLDIILQTCAQLQSGVDVKTIIASLIDRL 309
Query: 303 SNYAVSSADVLPEFLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDR 362
+N+A +AD++P+ ++ F N + ++I A+ +M + + L+VSLL TL+ +P
Sbjct: 310 ANFATRNADLVPD--NIKIFDIFFNNVKEIIQARPNMELQDILGLHVSLLNLTLKCYPTN 367
Query: 363 LDYVDQVLGACVKKLSSAPKLEDSRAT--KQVVALLSAPLDKYNDI-----------LMD 409
D ++VLG C + + K + ++ T KQ++ LL PLD + ++ L+
Sbjct: 368 KDNANEVLGLCQSIIVNKAKEDINKPTCVKQIIQLLQIPLDVFKNVLVVLKLSNYQPLIS 427
Query: 410 HLDDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKD-LDGAAQDELDEEDFK 468
L K +++ I+ + + NST I E V L E I+ LIKD D D++D+EDF+
Sbjct: 428 CLSYNNRKKVSLDIVNNTINNSTIIEEPEAVNNLLETIQTLIKDEQDQPDMDDIDKEDFQ 487
Query: 469 EEQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQN 528
EEQN VA LIH+ ++D E++ KI R H GGP R+ T+ PLVF +LR +R +
Sbjct: 488 EEQNKVASLIHLFDSEDPEKLFKIYIIARGHFGKGGPHRIRHTLVPLVFCSLRFIRNFKQ 547
Query: 529 Q-DGDVAGEEEP---ATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPV 584
Q D V +E A KIF +++TI+ L + +++ RLYLQ + + C L
Sbjct: 548 QVDSGVISLDENKWIAIGSKIFTFVSETIKALADIKLADLSFRLYLQALQTFDHCGLVSR 607
Query: 585 AYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLK 644
E +A ++++E+IAD KAQV A+ L+I TL +S+ E ++L + ++RLL
Sbjct: 608 VKELAIKALLIFQEDIADFKAQVMALQLLISTLNSLSIPNEEIYESLAAQTIKQASRLLL 667
Query: 645 KPDQCRAVYACSHLFWVDDQD-GIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVL 703
DQ + + CSHLFWVD+ ++ + VL LK+AL I ++ SS +
Sbjct: 668 PQDQAKLISTCSHLFWVDNPSRQYQNPDSVLQALKKALSI---------ISNESSPGLGT 718
Query: 704 FVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQSESTTLDPADNAFFASTKRYIEFQ 763
FV+ILN+ L++ +K + + L+ELI + E+ DPA + +T +YI+ Q
Sbjct: 719 FVDILNECLFYCDKETDAVPIQFVSDLVELIRTTHVKEA---DPA-LPYLQNTIKYIQSQ 774
Query: 764 KKKG 767
KG
Sbjct: 775 NYKG 778
>sp|O74552|VPS35_SCHPO Vacuolar protein sorting-associated protein 35
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps35 PE=1 SV=2
Length = 836
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 271/808 (33%), Positives = 437/808 (54%), Gaps = 89/808 (11%)
Query: 4 SGDEDEEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYEL 63
+ +E+ + L E + + ++ M R L + L +A + + L E+R S L+P +YYEL
Sbjct: 6 TANEEITRSLEESLNICKQSSRLMQRNLQTGRLMDAFRNCSISLVEMRNSALTPKQYYEL 65
Query: 64 YMRAFDELRKLEMFFKDESRHGV-SIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAP 122
YM + LR L + +G +++DLYELVQ+AG+I+PRLYL+ TVGS Y+++ A
Sbjct: 66 YMFNMESLRLLGGTLLETHLNGTHNLMDLYELVQYAGSIVPRLYLMITVGSAYLETPNAL 125
Query: 123 AKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAE---TVMDAVEFV 179
+E++ DL++MCRGVQHP+RGLFLR YL +R LP +GSE E DA TV+D+V+F+
Sbjct: 126 VREIMNDLLDMCRGVQHPLRGLFLRHYLLTQTRKGLP-LGSEDEEDASRKGTVLDSVKFL 184
Query: 180 LQNFTEMNKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKENVL 239
+ NFTEMNKLWVR+QH GP + KR +ERNEL+ LVG NL LSQ+ +D++ Y+++VL
Sbjct: 185 VINFTEMNKLWVRIQHLGPIKEFSKRTQERNELKVLVGLNLVRLSQL-NLDIDTYRDHVL 243
Query: 240 PRVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLM 299
P ++EQ++ C+D LAQ YL++ I Q F D HLQTL+T G +L P+V++ ++ ++
Sbjct: 244 PAIIEQIIECRDSLAQEYLVEVICQAFSDNMHLQTLDTYFGTVIKLSPSVNVTQLVVAML 303
Query: 300 DRLSNYA-----------------------------VSSAD---------VLPEFLQVEA 321
+RL++Y V D + PE+ E
Sbjct: 304 NRLTDYVQREYESDSSNEDESETVTEKLGDIKINEEVQQKDEQECPGDKVIPPEYAIQEV 363
Query: 322 FAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDRLDYVDQVLGACVKKLSSAP 381
L + + +VI ++ +P+ +S+ S+L F LR +P + Y D+V + + + P
Sbjct: 364 ---LWSHVVEVIQSRSGLPLDCIVSILSSILNFFLRCYPYKPQYADRVFQYINEHIINQP 420
Query: 382 KLEDSRA----TKQVVALLSAPLDKYNDI-----------LMDHLDDGTNKVMAMVIIQS 426
L + K + A+L PL + + + D +A +I+Q
Sbjct: 421 SLRSALHERPLQKSLCAILLLPLTYFPSFSYCLELQNFLPVFNAQDPNLRYDIARMIVQK 480
Query: 427 IMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDEEDFKEEQNSVARLIHMLYNDDS 486
I++ +S + + L + +I+ + D+L QN VA ++H L NDD
Sbjct: 481 IIEKGHSLSELTEAQELLGFVSVIIEKKGVDSLDDL--------QN-VALMVHYLNNDDP 531
Query: 487 EEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDGDVAGEEEPATPKKIF 546
+ ++I+ +++ + G + + + +P +V + L R + E+ + ++
Sbjct: 532 QIQIEILRSLKDTFIKAG-ENVKYLLPVVVNRCIFLARNFRIFKCMDWAEK----VRLLW 586
Query: 547 QLLNQTIETLLYV-PSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKA 605
+ +N I L S E+ L LYL AE A+ + AYEFFTQAF +YEE + DS+
Sbjct: 587 EFVNTCINVLYKNGDSLELCLALYLSAAEMADQENYPDFAYEFFTQAFSIYEESVLDSEL 646
Query: 606 QVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWV---- 661
Q + +IIG LQ+ F +++ DTL K T Y+++LLKKPDQC +Y SHL+W
Sbjct: 647 QYQQLLMIIGKLQKTRNFSVDDYDTLITKCTLYASKLLKKPDQCCGIYLASHLWWQVASG 706
Query: 662 DDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQ 721
+D +D +RVL CL+++L+IA+A + LF+ IL +Y Y++++
Sbjct: 707 EDSRPFQDPKRVLECLQKSLKIADACMDQLTSLK-------LFINILERYFYYYDQHCES 759
Query: 722 ITASAIQSLIELITSEMQSESTTLDPAD 749
I A I LI+L M+S + PAD
Sbjct: 760 IIAKHISGLIDLTEQNMRSILIS-SPAD 786
>sp|P34110|VPS35_YEAST Vacuolar protein sorting-associated protein 35 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS35 PE=1
SV=2
Length = 944
Score = 270 bits (691), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 152/367 (41%), Positives = 229/367 (62%), Gaps = 15/367 (4%)
Query: 16 GIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYELYMRAFDELRKLE 75
IA ++ M+R L + L E+L++++ ML+ELR LSP KYYELY+ FD L L
Sbjct: 10 AIAVIKQRTALMNRCLSQHKLMESLQHTSIMLTELRNPNLSPKKYYELYVIIFDSLTNLS 69
Query: 76 MFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKEVLKDLVEMCR 135
+ + + DLYELVQ+ GN++PRLYL+ TVG+ Y+ EAP KE+LKD++EMCR
Sbjct: 70 TYLIENHPQNHHLADLYELVQYTGNVVPRLYLMITVGTSYLTFNEAPKKEILKDMIEMCR 129
Query: 136 GVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAETVMDAVEFVLQNFTEMNKLWVRMQH 195
GVQ+PIRGLFLR YL+Q +++ LP+ + +F++ NF EMNKLWVR+QH
Sbjct: 130 GVQNPIRGLFLRYYLSQRTKELLPEDDPSFNS---------QFIMNNFIEMNKLWVRLQH 180
Query: 196 QGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKENVLPRVLEQVVNCKDELAQ 255
QGP R RE R +ER EL+ LVG L LSQI + +MYK+++LP +LEQV+ C+D ++Q
Sbjct: 181 QGPLRERETRTRERKELQILVGSQLVRLSQIIDDNFQMYKQDILPTILEQVIQCRDLVSQ 240
Query: 256 YYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRLSNYAVSSADVLPE 315
YL+D I QVF DE+HL+TL+TLL L P V I ++ L+DRL++Y + P
Sbjct: 241 EYLLDVICQVFADEFHLKTLDTLLQTTLHLNPDVSINKIVLTLVDRLNDYVTRQLEDDPN 300
Query: 316 ------FLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDRLDYVDQV 369
+L ++ F + + + + D+ + I L S++ +L+ +P+ D ++++
Sbjct: 301 ATSTNAYLDMDVFGTFWDYLTVLNHERPDLSLQQFIPLVESVIVLSLKWYPNNFDNLNKL 360
Query: 370 LGACVKK 376
++K
Sbjct: 361 FELVLQK 367
Score = 143 bits (360), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 162/310 (52%), Gaps = 48/310 (15%)
Query: 471 QNSVARLIHMLYNDDS-------------EEMLKIICTVRKHIMTGGPKRLPFTVPPLVF 517
Q +A LIH + N S E L+I+ ++ + GG + +T P ++
Sbjct: 531 QEKLAHLIHWIMNTTSRKQTMKNKIQFSLEAQLEILLLIKSSFIKGGIN-VKYTFPAIIT 589
Query: 518 SALRLVRQL---------QNQDGDVAGEEEPATPKKIFQLLNQTIETLLYV---PSPEMA 565
+ +L+R+ + D K++F+ +++ I + ++
Sbjct: 590 NFWKLMRKCRMIQEYLLKKRPDNKTLLSHYSNLLKQMFKFVSRCINDIFNSCNNSCTDLI 649
Query: 566 LRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRI-SVFG 624
L+L LQCA A+ L ++Y+FF+QAF ++EE ++DSK Q+ A+ I +LQ+ S++
Sbjct: 650 LKLNLQCAILADQLQLNEISYDFFSQAFTIFEESLSDSKTQLQALIYIAQSLQKTRSLYK 709
Query: 625 IENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFW------VDDQDGI-----KDGERV 673
D+L + T + ++LLKK DQCRAVY CSHL+W + +++GI +DG+RV
Sbjct: 710 EAYYDSLIVRCTLHGSKLLKKQDQCRAVYLCSHLWWATEISNIGEEEGITDNFYRDGKRV 769
Query: 674 LLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGN---TQITASAIQSL 730
L CL+R+LR+A++ + L VEILN+ LY+F G+ T I+ I L
Sbjct: 770 LECLQRSLRVADSIM-------DNEQSCELMVEILNRCLYYFIHGDESETHISIKYINGL 822
Query: 731 IELITSEMQS 740
IELI + ++S
Sbjct: 823 IELIKTNLKS 832
>sp|Q557H3|U505_DICDI UPF0505 protein OS=Dictyostelium discoideum GN=DDB_G0273473 PE=3
SV=1
Length = 987
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 101 ILPRLYLLCTVGSVY--IKSK-EAPAKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDK 157
+LPRL++ ++ Y I+ K+V+ + EM RG+ +P+ ++R+YL + S D
Sbjct: 314 LLPRLFVEISILKCYEFIQGDVNTEPKQVINRISEMIRGIGNPLVANYIRAYLTRRSFDL 373
Query: 158 LPDIGSEYERDAETVMDAVEFVLQNFTEMNKLWVRMQHQGPGRVREKREKERNELRDLVG 217
P EY++ FV+Q + ++ + ++ + R L D +G
Sbjct: 374 CP----EYKK----------FVIQLLKDF--VFTQKSYEKSKYLENTLSMYRITLTDYMG 417
Query: 218 KNLHVLSQIEGVDLEMYKENVLPRVLEQVVNCKDELAQYYLMDCIIQVFPDEY 270
L + L+ P LE+V+ E L++ II FP EY
Sbjct: 418 LYSPSLEWL----LQCLAHKATPETLEEVLELFRESKNSLLLNHIISSFPPEY 466
>sp|F1MCA7|LRRC7_BOVIN Leucine-rich repeat-containing protein 7 OS=Bos taurus GN=LRRC7
PE=3 SV=3
Length = 1536
Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 18/100 (18%)
Query: 176 VEFVLQNFTEMNKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYK 235
+EF+ NF + KL R+ E RE N L+ L K++H L+Q+E +DL +
Sbjct: 150 LEFLPANFGRLAKL----------RILELRE---NHLKTLP-KSMHKLAQLERLDLGNNE 195
Query: 236 ENVLPRVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTL 275
+ LP VL+Q+ N L + ++ + +QV P + L+ L
Sbjct: 196 FSELPEVLDQIQN----LRELWMDNNALQVLPGVWKLKML 231
>sp|P70587|LRRC7_RAT Leucine-rich repeat-containing protein 7 OS=Rattus norvegicus
GN=Lrrc7 PE=1 SV=2
Length = 1490
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 18/92 (19%)
Query: 176 VEFVLQNFTEMNKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYK 235
+EF+ NF + KL R+ E RE N L+ L K++H L+Q+E +DL +
Sbjct: 150 LEFLPANFGRLVKL----------RILELRE---NHLKTLP-KSMHKLAQLERLDLGNNE 195
Query: 236 ENVLPRVLEQVVNCKDELAQYYLMDCIIQVFP 267
+ LP VL+Q+ N L + ++ + +QV P
Sbjct: 196 FSELPEVLDQIQN----LRELWMDNNALQVLP 223
>sp|Q80TE7|LRRC7_MOUSE Leucine-rich repeat-containing protein 7 OS=Mus musculus GN=Lrrc7
PE=1 SV=2
Length = 1490
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 18/92 (19%)
Query: 176 VEFVLQNFTEMNKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYK 235
+EF+ NF + KL R+ E RE N L+ L K++H L+Q+E +DL +
Sbjct: 150 LEFLPANFGRLVKL----------RILELRE---NHLKTLP-KSMHKLAQLERLDLGNNE 195
Query: 236 ENVLPRVLEQVVNCKDELAQYYLMDCIIQVFP 267
+ LP VL+Q+ N L + ++ + +QV P
Sbjct: 196 FSELPEVLDQIQN----LRELWMDNNALQVLP 223
>sp|Q96NW7|LRRC7_HUMAN Leucine-rich repeat-containing protein 7 OS=Homo sapiens GN=LRRC7
PE=1 SV=1
Length = 1537
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 18/92 (19%)
Query: 176 VEFVLQNFTEMNKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYK 235
+EF+ NF + KL R+ E RE N L+ L K++H L+Q+E +DL +
Sbjct: 150 LEFLPANFGRLVKL----------RILELRE---NHLKTLP-KSMHKLAQLERLDLGNNE 195
Query: 236 ENVLPRVLEQVVNCKDELAQYYLMDCIIQVFP 267
LP VL+Q+ N L + ++ + +QV P
Sbjct: 196 FGELPEVLDQIQN----LRELWMDNNALQVLP 223
>sp|Q9NS87|KIF15_HUMAN Kinesin-like protein KIF15 OS=Homo sapiens GN=KIF15 PE=1 SV=1
Length = 1388
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 18/131 (13%)
Query: 540 ATPKKIFQLLNQTIETLLYVPSPEMAL--RLYLQCAEA-ANDCDLEPVAYEFFTQAFMLY 596
TP K +QL ++ + L SPEM LY Q + ND EPV E QAF
Sbjct: 660 TTPTKAYQLHSRPVPKL----SPEMGSFGSLYTQNSSILDNDILNEPVPPEMNEQAFEAI 715
Query: 597 EEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACS 656
EE+ + Q++A+ + + ++ ++ D L H +T Q + +++
Sbjct: 716 SEELRTVQEQMSALQAKLDEEEHKNLKLQQHVDKLEHHST-----------QMQELFSSE 764
Query: 657 HLFWVDDQDGI 667
+ W Q+ +
Sbjct: 765 RIDWTKQQEEL 775
>sp|Q14690|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3
Length = 1871
Score = 34.3 bits (77), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 22/164 (13%)
Query: 302 LSNYAVSSADVLPEFL---QVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRV 358
L+ ++VS + + ++ V F K N + K ++ ++ I G I L ++ L+F +
Sbjct: 1132 LNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLK 1191
Query: 359 HPDRLDYVDQVLGACVK-----------KLSSAPKLEDSR-ATKQVVAL-------LSAP 399
HPD+ V Q L A V L+ KLE+ A +VV + +S P
Sbjct: 1192 HPDKKFRVGQALRATVVGPDSSKTLLCLSLTGPHKLEEGEVAMGRVVKVTPNEGLTVSFP 1251
Query: 400 LDKYNDILMDHLDDGTNKVMAMVIIQSIMKNSTCISTAEKVEVL 443
K + + H+ D ++ + + +STA+ V L
Sbjct: 1252 FGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYILSTADNVLTL 1295
>sp|O74360|RGA4_SCHPO Probable Rho-type GTPase-activating protein 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rga4 PE=1 SV=2
Length = 933
Score = 33.9 bits (76), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 521 RLVRQLQNQDGDVAGEEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCD 580
++V L+N+D + E+ + +F+ + L +P+P + Y AAN C
Sbjct: 793 KIVALLRNEDTVLDPSEDISAVTSVFK------QYLRNLPNPIITYDQYFPFITAAN-C- 844
Query: 581 LEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSA 640
+++ F++ + + + A++ + LII L R++ + NR T + A +S
Sbjct: 845 ---ASFQDKLDGFIMVIKSLPPAHAEI--LQLIIRHLARVAAYSHANRMTSKNLAVVFSP 899
Query: 641 RLLKKPDQCRAV 652
L++ PD R V
Sbjct: 900 TLIRDPDNSRDV 911
>sp|P24339|CUT7_SCHPO Kinesin-like protein cut7 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=cut7 PE=3 SV=3
Length = 1085
Score = 33.5 bits (75), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 25/109 (22%)
Query: 3 LSGD-EDEEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYY 61
+SGD D + L+EG + + + +LD++N A+K S YY
Sbjct: 169 MSGDLSDSDGILSEGAGLIPRALYQLFSSLDNSNQEYAVKCS----------------YY 212
Query: 62 ELYMRAF------DELRKLEMFFKDESRHGVSIIDLYE--LVQHAGNIL 102
ELY +ELRK F+D SR G +I E +++AG+ L
Sbjct: 213 ELYNEEIRDLLVSEELRKPARVFEDTSRRGNVVITGIEESYIKNAGDGL 261
>sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD11 PE=2 SV=1
Length = 1874
Score = 33.1 bits (74), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 302 LSNYAVSSADVLPEFL---QVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRV 358
L+ ++VS + + ++ V F K N + K ++ ++ I G I L ++ L+F +
Sbjct: 1131 LNTHSVSPLEKIKQYQPGQTVTCFLKKYNMVKKWLEVEIAPDIRGRIPLLLTSLSFKVLK 1190
Query: 359 HPDRLDYVDQVLGACV 374
HPD+ + Q L A V
Sbjct: 1191 HPDKKFQIGQALKATV 1206
>sp|Q9NXB0|MKS1_HUMAN Meckel syndrome type 1 protein OS=Homo sapiens GN=MKS1 PE=1 SV=2
Length = 559
Score = 33.1 bits (74), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 18/117 (15%)
Query: 212 LRDLVGKNLHVLSQIEGVDLEMYKENVLPRVLEQVVNCKDELAQYYLMDCIIQVFPDEYH 271
+DL G++ LS + G D EM +P L VN + AQ Y D + F E
Sbjct: 284 FKDLYGRHKEYLSSLVGTDFEM----TVPGALRLFVNGEVVSAQGYEYDNLYVHFFVE-- 337
Query: 272 LQTLETLLGACPQLQPTVDIKTVLSRLMDRLSNYAV------------SSADVLPEF 316
L T A QL T S MD++++++ S+D LPE+
Sbjct: 338 LPTAHWSSPAFQQLSGVTQTCTTKSLAMDKVAHFSYPFTFEAFFLHEDESSDALPEW 394
>sp|O01510|SMG1_CAEEL Serine/threonine-protein kinase smg-1 OS=Caenorhabditis elegans
GN=smg-1 PE=1 SV=3
Length = 2322
Score = 33.1 bits (74), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 30/128 (23%)
Query: 363 LDYVDQVLGACVKKLSSAPKLEDSRATKQVVALLSAPLDKYNDILMDHLDDGTNKVMAMV 422
++ + G C L + K E + AT +++ LL K+ D+L+D ++DG NK +
Sbjct: 1433 FQFIQNMSGDC-DNLPYSKKEETTLATLRILELLV----KHGDVLIDVINDGLNKTNVHI 1487
Query: 423 ------------------IIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDE 464
I ++++ + I TA V+F+++ GAA D
Sbjct: 1488 WKEILPQLFARLSHPSEHIRKTLVDLISKICTAAPHAVVFQVV-------SGAASSSTDG 1540
Query: 465 EDFKEEQN 472
E+ +E+QN
Sbjct: 1541 EELEEQQN 1548
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 277,802,780
Number of Sequences: 539616
Number of extensions: 11493282
Number of successful extensions: 32241
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 32157
Number of HSP's gapped (non-prelim): 47
length of query: 779
length of database: 191,569,459
effective HSP length: 125
effective length of query: 654
effective length of database: 124,117,459
effective search space: 81172818186
effective search space used: 81172818186
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)