Query 036120
Match_columns 779
No_of_seqs 120 out of 196
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:37:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03635 Vps35: Vacuolar prote 100.0 1E-242 3E-247 2109.3 15.2 720 11-738 1-762 (762)
2 KOG1107 Membrane coat complex 100.0 2E-231 4E-236 1905.6 61.1 743 27-779 1-760 (760)
3 KOG3682 Predicted membrane pro 99.9 5.5E-21 1.2E-25 214.8 38.9 523 17-627 143-759 (930)
4 KOG1107 Membrane coat complex 99.6 3.1E-16 6.8E-21 178.2 9.6 197 36-268 148-346 (760)
5 PF14677 FANCI_S3: FANCI solen 64.9 60 0.0013 34.3 10.7 109 259-396 106-218 (219)
6 PF11864 DUF3384: Domain of un 63.1 3E+02 0.0065 32.1 24.2 199 412-623 3-228 (464)
7 PLN03217 transcription factor 51.8 29 0.00064 31.4 4.8 47 718-764 13-62 (93)
8 PF11864 DUF3384: Domain of un 38.0 7.1E+02 0.015 29.0 20.6 225 319-556 148-383 (464)
9 PF14223 UBN2: gag-polypeptide 36.1 2.6E+02 0.0056 25.8 9.0 54 218-272 30-83 (119)
10 COG2147 RPL19A Ribosomal prote 30.1 89 0.0019 31.1 4.8 46 36-81 95-145 (150)
11 KOG4524 Uncharacterized conser 29.5 1.3E+03 0.027 29.9 15.3 55 472-528 803-857 (1014)
12 KOG2561 Adaptor protein NUB1, 28.5 70 0.0015 37.2 4.3 23 134-156 255-277 (568)
13 KOG1991 Nuclear transport rece 27.2 1.5E+03 0.032 29.4 23.3 220 417-645 479-719 (1010)
14 PF14728 PHTB1_C: PTHB1 C-term 25.7 5.1E+02 0.011 29.7 10.7 142 291-455 165-321 (377)
15 PF04100 Vps53_N: Vps53-like, 23.4 1.2E+03 0.025 26.8 15.9 218 260-482 8-287 (383)
16 PF08673 RsbU_N: Phosphoserine 23.3 2.8E+02 0.0062 24.6 6.4 54 319-378 18-71 (77)
17 cd01418 Ribosomal_L19e_A Ribos 22.0 1.5E+02 0.0033 29.5 4.8 42 40-81 96-142 (145)
18 PTZ00436 60S ribosomal protein 21.6 1.4E+02 0.003 33.2 4.8 46 37-82 96-146 (357)
No 1
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=100.00 E-value=1.5e-242 Score=2109.27 Aligned_cols=720 Identities=57% Similarity=0.906 Sum_probs=228.4
Q ss_pred HHHHHHHHHHHHhHHHHHHhhchhcHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHhHHHHHHHHHhhhhCCCCchh
Q 036120 11 KWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYELYMRAFDELRKLEMFFKDESRHGVSIID 90 (779)
Q Consensus 11 k~L~ea~~~Vk~qa~~Mkr~Ld~~~L~dALkhas~mL~ELRts~LsPK~YYeLYm~V~d~L~~L~~yl~d~~~~g~~l~d 90 (779)
|||+||+++||+||++||||||+++|||||||||+||+||||++||||+||||||+|||+|++|+.||.|+|++|++++|
T Consensus 1 k~L~ea~~~vk~qa~~Mkr~Ld~~~l~~aLk~as~mL~ELRt~~LsPk~YYeLYm~vfd~L~~L~~~l~~~~~~~~~l~d 80 (762)
T PF03635_consen 1 KLLEEALSVVKQQAFLMKRCLDNNKLMDALKHASNMLSELRTSSLSPKQYYELYMQVFDELRHLSSYLKDEHKKGRKLAD 80 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHhHHHHHHHHHHhccCCCcHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccchhHHHHHHHHHHHhccccCCCCCCccccCCc
Q 036120 91 LYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAE 170 (779)
Q Consensus 91 LYE~VQyagnIlPRLYLmItVGs~yik~~~~p~~eILkDLvEMcRGVQhPiRGLFLR~YL~q~~k~~LPd~~s~~e~~~g 170 (779)
|||+||||||||||||||||||++||+++++|++||||||+|||||||||+|||||||||+|+|||+|||+++ +++++|
T Consensus 81 LYE~VQyagnIvPRLYLmitVG~~yi~~~~~~~~eilkDlvEMcrGVQhP~RGLFLR~YL~q~~k~~LP~~~~-~~~~~g 159 (762)
T PF03635_consen 81 LYELVQYAGNIVPRLYLMITVGSVYIKSKEAPAKEILKDLVEMCRGVQHPIRGLFLRYYLSQMTKDKLPDTGS-EEGNGG 159 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhccccchhHHHHHHHHHHHhhhhCCCCCC-CCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999865 678999
Q ss_pred ChhhhHHHHHHhHHHHHHHHHHHhhcCCCchhHhHHHHHHHHHHHhhhhhHHhhcccCCChHHHhhhhchHHHHHHHhcC
Q 036120 171 TVMDAVEFVLQNFTEMNKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKENVLPRVLEQVVNCK 250 (779)
Q Consensus 171 ~~~dsi~Fll~NF~EMNKLWVRlQhqG~~rere~R~~ER~eL~iLVG~NLvrLSqLegv~~~~Y~~~iLP~iLeqIv~C~ 250 (779)
++.|||+||++||+||||||||||||||+|||+||++||+|||+||||||||||||||+|+++|++.|||+||||||+||
T Consensus 160 ~~~dsi~Fll~NF~EMNKLWVRlqhqg~srer~~R~~ER~eL~iLVG~NLvrLSqLeg~~~~~Y~~~iLP~ileqiv~c~ 239 (762)
T PF03635_consen 160 DVNDSIDFLLTNFIEMNKLWVRLQHQGHSREREKREKERKELRILVGSNLVRLSQLEGVDLEMYKEKILPRILEQIVQCR 239 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHhHhhhHhccCchhhHHhHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhccCCCcch-----------hch
Q 036120 251 DELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRLSNYAVSSADVLPEF-----------LQV 319 (779)
Q Consensus 251 D~iAQeYLmd~IIQvFPDEfHL~TL~~lL~a~~~L~~~V~i~~Il~~Li~RL~~y~~~~~~~~~~~-----------~~~ 319 (779)
|++|||||||||||||||||||+||++||++|++|+|+||+++|+++|||||++|+.++++..++. .++
T Consensus 240 D~lAQeYL~d~iIQvFPDefHL~TL~~lL~~~~~L~~~V~i~~il~~Li~RL~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (762)
T PF03635_consen 240 DVLAQEYLMDVIIQVFPDEFHLQTLDELLSACLQLQPGVNIKEILISLIDRLANYAEREPESESEFESEKEEEEEIPEDV 319 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhccccccccchhhhhcccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999887754321 279
Q ss_pred HHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHhhHHhcCCcchhHHHHHHHHHHHhccCC---CCCChHHHHHHHHHH
Q 036120 320 EAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDRLDYVDQVLGACVKKLSSAP---KLEDSRATKQVVALL 396 (779)
Q Consensus 320 ~lF~~F~~~i~~l~~~~~~l~~~~~~~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~---~~~~~~~~~~l~~LL 396 (779)
++|++||+++.++++++|++|+++++++++||++|+++|||++++|||.+|++|++++++.+ ...++++.+.|++||
T Consensus 320 ~lF~~f~~~~~~l~~~~~~l~~~~~i~l~~sll~l~l~~yp~~~~~vd~vl~~~~~~l~~~~~~~~~~~~~~~~~L~~LL 399 (762)
T PF03635_consen 320 DLFEVFWDQLSKLIEARPDLPLEDIISLLVSLLNLSLKCYPDNLDYVDKVLKFCAEKLSNIGDSGKNHSSEAQKELVKLL 399 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998873 334557888999999
Q ss_pred HcchhhhHHH-----------HHccCCcchhHHHHHHHHHHHHhcCccccCHHHHHHHHHHhHHHHhcCCCCcccc----
Q 036120 397 SAPLDKYNDI-----------LMDHLDDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDE---- 461 (779)
Q Consensus 397 ~~pl~~~~~~-----------ll~~l~~~~rk~va~~il~~~l~~~~~i~s~~~~~~ll~~~~~Li~~~~~~~~~~---- 461 (779)
+.|+++|.+. |++.||+++||+||..|+++++++++.|+|+++++.+|++++||++|+++.+.++
T Consensus 400 ~~Pi~~~~~i~~vL~L~~y~~Ll~~L~~~~rk~IA~~Ii~~iL~~~~~Ist~e~v~~ll~li~pLi~d~~d~~~~~~~~~ 479 (762)
T PF03635_consen 400 TLPIDSYFSILTVLSLENYPPLLSLLPYETRKQIALEIIDNILENNTIISTPEEVDNLLELISPLIKDQDDQPSSEPDLK 479 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHhhcccHHHHHcCccHHHHHHhCChHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhhCCCCCCCcccccc
Confidence 9999887555 9999999999999999999999999999999999999999999999998877653
Q ss_pred CChhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhccCCccccccccHHHHHHHHHHHHhhhccCCC-------C
Q 036120 462 LDEEDFKEEQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDGDV-------A 534 (779)
Q Consensus 462 ~~~~~~~~eQ~~var~vhli~~~d~~~~~~il~~~r~~~~~gg~~ri~~t~P~Li~~~l~L~~~~~~~~~~~-------~ 534 (779)
.++++|.+||++|||+||+++++||+.||++|..+|+||++||++|++||||||||++|||+|+++..+... .
T Consensus 480 ~~~eef~eeQ~~varliHLi~~~D~d~~~~iL~~~rk~~~~Gg~~ri~~TlP~LIf~~lkL~r~~~~~~~~~~~~~~~~~ 559 (762)
T PF03635_consen 480 EDSEEFAEEQELVARLIHLIRSDDPDQQFEILNIARKHFGNGGPKRIRYTLPPLIFAALKLARRIKDLKQKYPNNAIKDD 559 (762)
T ss_dssp -----TCCCHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHCTT-SSSHHHHCHHHHHHHHHHHHHHHCCC---------CT
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCCceeeeeHHHHHHHHHHHHHHHHHhhccchhhccccc
Confidence 478899999999999999999999999999999999999999999999999999999999999999764110 0
Q ss_pred CCCCCCChhHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHHhhhCCCchhHHHHHHHHHHhhhccccCcHHHHHHHHHH
Q 036120 535 GEEEPATPKKIFQLLNQTIETLLYVP-SPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLI 613 (779)
Q Consensus 535 ~~~~~~~~k~if~fv~~~i~~L~~~~-~~~lalkL~Lq~A~~Ad~~~~~~iaYeFf~qAf~iyEe~isdS~~Q~~al~~i 613 (779)
.++...+++++|+|+|++|++|.+.. .|++++|||||||.+||+++++++|||||+|||+||||+|+|||+|++||.+|
T Consensus 560 ~~~~~~~~~kifkfi~~~i~~L~~~~~~~~lalkL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~IsDSk~Q~~aL~~i 639 (762)
T PF03635_consen 560 DEDWEKKCKKIFKFIHQCISALYQIHPSSELALKLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEISDSKAQFQALTLI 639 (762)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH--SHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 11111367899999999999997544 47999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCC-----CCCcchhhHHHHHHHHHHHHHHHH
Q 036120 614 IGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQ-----DGIKDGERVLLCLKRALRIANAAQ 688 (779)
Q Consensus 614 i~tL~~~~~~~~e~y~~L~tk~t~~askLLKK~dQcrav~~cshLfw~~~~-----~~~~d~krVleCLqkslkiAd~~~ 688 (779)
||||+++|+|++||||+|+||||+||||||||||||||||+||||||+++. ..+||||||+|||||||||||+||
T Consensus 640 i~tL~~~r~~~~Enyd~L~tk~t~yasKLLKK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAds~m 719 (762)
T PF03635_consen 640 IGTLQKTRSFSEENYDTLITKCTLYASKLLKKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIADSCM 719 (762)
T ss_dssp HHHHCC-----HHHHHHHHHHHHHHHHC-SSHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999853 469999999999999999999999
Q ss_pred HHhhhccCCCCchhHHHHHHhhhhhhhccCCCcccHHHHHHHHHHHHhhh
Q 036120 689 QMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEM 738 (779)
Q Consensus 689 d~~~~~~~~~~~~~LfveILn~~lyf~~~~~~~it~~~in~LI~lI~~~l 738 (779)
| +.++++|||||||+|+|||++||++||++||||||++|++|+
T Consensus 720 d-------~~~~~~LfveILn~ylyf~~~~~~~vt~~~in~LIelI~~~~ 762 (762)
T PF03635_consen 720 D-------PSQSVQLFVEILNRYLYFFEKGNEEVTVKYINGLIELIKENL 762 (762)
T ss_dssp S-------HHHHHHHHHHHHHHHHHHHTTT-TTS-HCHHHHHHHHHHCC-
T ss_pred C-------cchhHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHhcCC
Confidence 9 999999999999999999999999999999999999999985
No 2
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-231 Score=1905.60 Aligned_cols=743 Identities=66% Similarity=1.016 Sum_probs=711.9
Q ss_pred HHHhhchhcHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHhHHHHHHHHHhhhhCCCCchhHHHHHHHhcchhHHHH
Q 036120 27 MHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYELYMRAFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLY 106 (779)
Q Consensus 27 Mkr~Ld~~~L~dALkhas~mL~ELRts~LsPK~YYeLYm~V~d~L~~L~~yl~d~~~~g~~l~dLYE~VQyagnIlPRLY 106 (779)
|+||||+|||||||||+|+||+|||||.||||+||||||..||+|+.|+.||.|++++|++++||||+||||||||||||
T Consensus 1 m~r~ld~~~l~dalk~~~~ml~elRts~LsPk~YYeLym~~~~~L~~l~~~l~ee~~~~~~l~dLYElVQyagni~PRlY 80 (760)
T KOG1107|consen 1 MKRCLDKNKLMDALKHSAQMLSELRTSKLSPKKYYELYMRSFDELRCLEIFLKEETRRGHKLADLYELVQYAGNILPRLY 80 (760)
T ss_pred CchhhhcccHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcccchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccchhHHHHHHHHHHHhccccCCCCCCccccCCcChhhhHHHHHHhHHHH
Q 036120 107 LLCTVGSVYIKSKEAPAKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAETVMDAVEFVLQNFTEM 186 (779)
Q Consensus 107 LmItVGs~yik~~~~p~~eILkDLvEMcRGVQhPiRGLFLR~YL~q~~k~~LPd~~s~~e~~~g~~~dsi~Fll~NF~EM 186 (779)
||||||+||||++++|+|||||||||||||||||+||||||+||+||||++||+.|+.+++.+..+.|+++|++.||+||
T Consensus 81 Ll~TvGsvyik~~~a~~keIlkDlveMCRgVQhPlRGLFLR~YL~q~tr~~LP~~~edee~~~~~~~d~~~Fvl~NF~EM 160 (760)
T KOG1107|consen 81 LLITVGSVYIKSKEAPRKEILKDLVEMCRGVQHPLRGLFLRSYLAQCTRDKLPDIGEDEEGDADTVMDAVEFVLINFTEM 160 (760)
T ss_pred eeeEeceEEEecCCCcHHHHHHHHHHHHhccccchhHHHHHHHHHhcccccCCCCCCCccchhhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888877777889999999999999
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHHHHhhhhhHHhhcccCCChHHHhhhhchHHHHHHHhcCCcchhhHhHhhhHhcc
Q 036120 187 NKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKENVLPRVLEQVVNCKDELAQYYLMDCIIQVF 266 (779)
Q Consensus 187 NKLWVRlQhqG~~rere~R~~ER~eL~iLVG~NLvrLSqLegv~~~~Y~~~iLP~iLeqIv~C~D~iAQeYLmd~IIQvF 266 (779)
||||||||||||+||||+|++||+|||||||+||||||||+|++.++|++.|||+||||||+|||++||+||||||||||
T Consensus 161 NKLWVRmQHqGp~re~ekrekER~ELriLVG~nLvrLsQle~~~~~mY~~~vLp~iLEQvV~CrD~laQeYLmeciiQvF 240 (760)
T KOG1107|consen 161 NKLWVRMQHQGPSREKEKREKERNELRILVGKNLVRLSQLEGVDLEMYRDDVLPRILEQVVNCRDELAQEYLMECIIQVF 240 (760)
T ss_pred HHHhhhhccCCchhHHHHHHHHHHHHHHHHhhhHHHHHHhccccHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHhHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhccCCCcchhchHHHHHHHHHHHHHHhhCCCCchhhHHH
Q 036120 267 PDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRLSNYAVSSADVLPEFLQVEAFAKLSNAIGKVIDAQVDMPIVGAIS 346 (779)
Q Consensus 267 PDEfHL~TL~~lL~a~~~L~~~V~i~~Il~~Li~RL~~y~~~~~~~~~~~~~~~lF~~F~~~i~~l~~~~~~l~~~~~~~ 346 (779)
|||||++||+.+|+||++|+|+||++.++.+|||||++|+.++.++.|...++++|++||.++.+++++||+||+.++++
T Consensus 241 ~DefHLqTLd~~L~ac~~L~~~V~i~~~l~~l~dRLs~y~t~~~e~~p~~~~~~~f~~~~~~~~~vi~~r~dmpl~~~v~ 320 (760)
T KOG1107|consen 241 PDEFHLQTLDTLLGACPQLQPSVNIKILLIALVDRLSNYATSENEVLPAPLQMEAFEKLSNAITKVIQSRPDMPLDDIVT 320 (760)
T ss_pred CcHHHHHhHHHHHHHHHhcCCCcchHHHHHHHhhhhhHHHhccccCCchHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHH
Confidence 99999999999999999999999999999999999999999998887776789999999999999999999999999999
Q ss_pred HHHHHHHhhHHhcCCcchhHHHHH--HHHHHHhccCCCCCChHHHHHHHHHHHcchhhhHHH-----------HHccCCc
Q 036120 347 LYVSLLTFTLRVHPDRLDYVDQVL--GACVKKLSSAPKLEDSRATKQVVALLSAPLDKYNDI-----------LMDHLDD 413 (779)
Q Consensus 347 l~~sll~l~l~~yp~~~~~vd~il--~~~~~~l~~~~~~~~~~~~~~l~~LL~~pl~~~~~~-----------ll~~l~~ 413 (779)
|++|+++|+++|||++.+|+|++| +.|...++..+...+..+.+.++++|..|++.|+++ ++..+++
T Consensus 321 L~~sll~~~l~~ypdr~dy~dqvf~~~~~~~~~s~~~~~~~s~~~k~l~~~L~~p~~~y~nvvtll~L~~~~~v~~~~D~ 400 (760)
T KOG1107|consen 321 LYVSLLNFTLKCYPDRLDYADQVFQGGSCINQLSSTGKLADSPVTKELVALLSAPLEKYKNVLTLLKLSNYPKVMEYLDY 400 (760)
T ss_pred HHHHHHHhhHhhcCchHHHHHHHccCCCcccccCccccccccHHHHHHHHHHcchHHHHHhHHHHHHhhccCchhHHhch
Confidence 999999999999999999999999 777777777766667788899999999999999877 7799999
Q ss_pred chhHHHHHHHHHHHHhcCccccCHHHHHHHHHHhHHHHhcCCCCccccCChhhHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 036120 414 GTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDEEDFKEEQNSVARLIHMLYNDDSEEMLKII 493 (779)
Q Consensus 414 ~~rk~va~~il~~~l~~~~~i~s~~~~~~ll~~~~~Li~~~~~~~~~~~~~~~~~~eQ~~var~vhli~~~d~~~~~~il 493 (779)
.+++.||..|+++++++++.+.+.++++.+|+++++|+++.+++|.++.|+++|.+||++|||+||++.++||+.|+.||
T Consensus 401 ~~~~~ma~~i~q~~l~~~t~~~t~d~v~~l~~li~~likd~~~~~~~~~d~edf~eeqn~va~lIh~L~nddp~~q~~il 480 (760)
T KOG1107|consen 401 ETRKNMASYIVQSILENNTVISTADEVDSLFSLISGLIKDQDGQSADEVDEEDFQEEQNLVARLIHLLRNDDPEEQFLIL 480 (760)
T ss_pred HHHHHHHHHHHHHHHhhcceeehHhhHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCccccccccHHHHHHHHHHHHhhhccCCCCCCCCCCChhHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 036120 494 CTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDGDVAGEEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCA 573 (779)
Q Consensus 494 ~~~r~~~~~gg~~ri~~t~P~Li~~~l~L~~~~~~~~~~~~~~~~~~~~k~if~fv~~~i~~L~~~~~~~lalkL~Lq~A 573 (779)
+.+|++|.+||++ ++||+||+||.+|+|+|++....++...|+ +...+++|+|+++| ..++.++.|++++|||||||
T Consensus 481 ~~~r~~f~~gG~~-l~~t~Pplv~~~~~Lir~~~~~~~~~~~~~-s~~~~~~~q~~~~~-~l~~~~e~~eL~LrLyLq~A 557 (760)
T KOG1107|consen 481 NSAKKHFIKGGPN-LKYTLPPLVFSAYKLVRRFRDMKDNDDKWD-SATKKFIFQFLNIC-ELLSNVELPELALRLYLQCA 557 (760)
T ss_pred HHHHHHhhcCCcc-ccccccHHHHHHHHHHHHcccccccchhhh-hhhHHHHHHHHhHH-HHhccCCchhhHHHHHHHHH
Confidence 9999999999987 999999999999999999998755544444 35578999999999 55556689999999999999
Q ss_pred HHhhhCCCchhHHHHHHHHHHhhhccccCcHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHhccCchhhHHHHH
Q 036120 574 EAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVY 653 (779)
Q Consensus 574 ~~Ad~~~~~~iaYeFf~qAf~iyEe~isdS~~Q~~al~~ii~tL~~~~~~~~e~y~~L~tk~t~~askLLKK~dQcrav~ 653 (779)
.+||++++|++|||||||||++|||+|||||+|++||.+|||||++||||++||||+|+||||+||||||||||||||||
T Consensus 558 ~aAd~~~~etvaYEFfsQAfslyEeeisDSkaQ~~al~lIiGTlqr~~~f~~En~dpL~~kctl~asKLLKKPDQcRaVy 637 (760)
T KOG1107|consen 558 EAADQCDLETVAYEFFSQAFSLYEEEISDSKAQVTALQLIIGTLQKTRVFSVENRDPLTTKCTLYAAKLLKKPDQCRAVY 637 (760)
T ss_pred HhcccCCCcchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhccHHHhhcccccccchHHHHHHHHHHHhhcCCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCC--CCCCcchhhHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhhhhhhhccCCCcccHHHHHHHH
Q 036120 654 ACSHLFWVDD--QDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLI 731 (779)
Q Consensus 654 ~cshLfw~~~--~~~~~d~krVleCLqkslkiAd~~~d~~~~~~~~~~~~~LfveILn~~lyf~~~~~~~it~~~in~LI 731 (779)
+||||||+++ .+.++|||||+||||||||||++||| +..+++|||||||+|+|||++||++||+++||+||
T Consensus 638 tcsHLfW~~~~ngE~l~dGkRVleCLkkAlkIA~qcmd-------~~~~vqLFIEILnrYiYfyek~n~~iti~~I~~LI 710 (760)
T KOG1107|consen 638 TCSHLFWSGRTNGEKLKDGKRVLECLKKALKIAQQCMD-------NLRQVQLFIEILNRYIYFYEKGNDGITIKHIESLI 710 (760)
T ss_pred eeehhhhcccCCccccCchHHHHHHHHHHHHHHHHHHh-------hccchhHHHHHHHHHHhhhhcCCCcccHHHHHHHH
Confidence 9999999997 46799999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHhhhccCC-CCCchhHHHHHHHHHHHHHHHhhhC-CCCCCCCCCCCC
Q 036120 732 ELITSEMQSES-TTLDPADNAFFASTKRYIEFQKKKG-GAMGEKYDPINV 779 (779)
Q Consensus 732 ~lI~~~l~~~~-~~~~~~~~~~f~~T~~yI~~~~~~~-~~~~~r~~~i~~ 779 (779)
++|++|+.+++ +++.+.+.+||.||++||+-+++++ ++.++.|++|.+
T Consensus 711 ~lik~n~~~l~~s~~~d~~~~~~~ntl~~l~l~~es~~~~l~~~ye~~~~ 760 (760)
T KOG1107|consen 711 KLIKTNAKSLKSSNEADLSESFLSNTLETLELIKESVLGALGELYEGIIF 760 (760)
T ss_pred HHHHhhhhhccccchhhhhhhHHHHHHHHHHHHhcCccccchhhhhcccC
Confidence 99999999998 5566788999999999999999987 556899998763
No 3
>KOG3682 consensus Predicted membrane protein (associated with esophageal cancer in humans) [Function unknown]
Probab=99.91 E-value=5.5e-21 Score=214.78 Aligned_cols=523 Identities=17% Similarity=0.184 Sum_probs=375.8
Q ss_pred HHHHHHhHHHHHHhhchhcHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHhHHHHHHHHHhhhhCC----C------
Q 036120 17 IAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYELYMRAFDELRKLEMFFKDESRHG----V------ 86 (779)
Q Consensus 17 ~~~Vk~qa~~Mkr~Ld~~~L~dALkhas~mL~ELRts~LsPK~YYeLYm~V~d~L~~L~~yl~d~~~~g----~------ 86 (779)
+..|-++.--.++|-..++-.+++|..-..-.-| ...-.-.+|+.-|+.++|.|..+++-.+++.+.. +
T Consensus 143 V~rI~el~~~~~~Aw~~d~~v~~lK~~i~~~kLl-~dt~v~~fyp~~fV~~td~ld~fG~iv~eRi~~k~~~d~~~~~~~ 221 (930)
T KOG3682|consen 143 VDRILELSTKSIRAWSLDNTVENLKSDISSFKLL-LDTFVAWFYPRAFVALTDKLDEFGMIVVERIRLKSLSDEKNLKNV 221 (930)
T ss_pred HHHHHHHHHhHHHhhhhhhHHHHHHhhhhhhhhc-cchhHHhhccceeEeeehhhHHHhHHHHHHHHHHhhhhhhhhhhh
Confidence 3346667777777777777778887663333322 2224558999999999999999999999987531 0
Q ss_pred ------------------CchhHHHHH----------HH---hcchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 036120 87 ------------------SIIDLYELV----------QH---AGNILPRLYLLCTVGSVYIKSKEAPAKEVLKDLVEMCR 135 (779)
Q Consensus 87 ------------------~l~dLYE~V----------Qy---agnIlPRLYLmItVGs~yik~~~~p~~eILkDLvEMcR 135 (779)
.-.++.|.. |- .....||-||...|-.|+-+.-...++|.|-+|+-|.|
T Consensus 222 ~~~~~~~l~~~~~lit~f~~e~~~esfk~~c~~~~~f~~i~~~~elyp~~ylea~Il~c~~fL~~~~~~e~l~RL~~m~r 301 (930)
T KOG3682|consen 222 KKASQRFLILRENLITAFGREDRVESFKIVCESANLFQSIPPQSELYPYYYLEAIILDCFGFLLYLLAKENLARLSAMFR 301 (930)
T ss_pred hhhHHHHHHHHHhhhhhcChhhhhhHHHHHHhChHhHhccCchhhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhh
Confidence 012333333 22 23678999999999999999988788899999999999
Q ss_pred cccchhHHHHHHHHHHHhccccCCCCCCccccCCcChhhhHHHHHHhHHHHHHHHHHHhhcCCCchhHhHHHHHHHHHHH
Q 036120 136 GVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAETVMDAVEFVLQNFTEMNKLWVRMQHQGPGRVREKREKERNELRDL 215 (779)
Q Consensus 136 GVQhPiRGLFLR~YL~q~~k~~LPd~~s~~e~~~g~~~dsi~Fll~NF~EMNKLWVRlQhqG~~rere~R~~ER~eL~iL 215 (779)
|.|+|+-.++.|+|+....-..=|... .+|..||+..-|.+--. +
T Consensus 302 g~~dPlvs~yar~y~~~~~~~i~~~~~--------------~yL~k~~~d~l~~f~~~---------------------~ 346 (930)
T KOG3682|consen 302 GEQDPLVSDYARNYFLKLSEIIDIPIR--------------FYLEKSMIDCLKFFDAA---------------------N 346 (930)
T ss_pred ccCCchHHHHHHHHHHHHhhhcCcchH--------------HHHHHHHHHHHHHHHHH---------------------h
Confidence 999999999999999998876544421 25666777664443222 2
Q ss_pred hhhhhHHhhcccCCChHHHhhhhchHHHHHHHhcCCcchhhHhHhhhHhccCchhhHHhHHHHHhhccCCCCCCCHHHHH
Q 036120 216 VGKNLHVLSQIEGVDLEMYKENVLPRVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVL 295 (779)
Q Consensus 216 VG~NLvrLSqLegv~~~~Y~~~iLP~iLeqIv~C~D~iAQeYLmd~IIQvFPDEfHL~TL~~lL~a~~~L~~~V~i~~Il 295 (779)
+.+ +.|++=.-|.+.+.|-..+-|.+ +|+|.|++---|.+-|...+++-+++ |-||..++
T Consensus 347 ~d~-~e~~~i~~~~~~~~l~sL~~pa~-------------~~i~~cl~~~~~~~~~~~~l~~~~~~------g~nv~~lL 406 (930)
T KOG3682|consen 347 LDI-LERLAIMCSQFNDDLSSLFAPAH-------------ITIYSCLIDPLNRTPHWRVLHDWMQA------GKNVMELL 406 (930)
T ss_pred HHH-HhhhhhhhcccchhhhhhccHHH-------------HHHHHHhhccccccchHHHHHHHHhc------CccHHHHH
Confidence 222 45566666788889999999977 99999999999999999988776544 44588888
Q ss_pred HHHHHHHhh-hhhh------------ccCCC-----------------c-chhchHHHHHHHHHHHHHHhhCCCCchhhH
Q 036120 296 SRLMDRLSN-YAVS------------SADVL-----------------P-EFLQVEAFAKLSNAIGKVIDAQVDMPIVGA 344 (779)
Q Consensus 296 ~~Li~RL~~-y~~~------------~~~~~-----------------~-~~~~~~lF~~F~~~i~~l~~~~~~l~~~~~ 344 (779)
+.++.-|+. +.+. ++-+. | +.....+.+.-|..+.++- .+.|+
T Consensus 407 h~~~t~l~~e~~~~~sm~~v~mI~~c~~~gf~~vl~~r~Lg~~l~~~~p~e~~lssli~evw~~v~~~~------n~qdy 480 (930)
T KOG3682|consen 407 HRKKTSLADERKEAVSMQGVSMIVQCVAHGFHTVLDLRPLGAYLRKTSPLEEKLSSLITEVWMRVADIS------NFQDY 480 (930)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhcCchhhHhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhc------CHHHH
Confidence 888877773 2221 01111 1 1112345566777777765 68999
Q ss_pred HHHHHHHHHhhHHhcCCcchhHHHHHHHHHHHhccCCCCCChHHHHHHHHHHHc------------chhhhHHHHHccCC
Q 036120 345 ISLYVSLLTFTLRVHPDRLDYVDQVLGACVKKLSSAPKLEDSRATKQVVALLSA------------PLDKYNDILMDHLD 412 (779)
Q Consensus 345 ~~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~LL~~------------pl~~~~~~ll~~l~ 412 (779)
+....++.++..+.|-.+ .||++++.+..++....... +...+|..++.. |+++| ..+++++.
T Consensus 481 v~c~~awv~y~~k~~t~~--ev~~iL~dV~~~~r~d~~~e--e~~a~Lq~II~k~l~Hf~d~~~i~~~n~F-i~ilDl~~ 555 (930)
T KOG3682|consen 481 VDCCAAWVSYITKYYTLK--EVTKILEDVLVRLRIDDQTE--ENTALLQNIIAKFLEHFSDCLDIVTSNSF-IKILDLIG 555 (930)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCchhccc--hhhHHHHHHHHHHHHHHhhHHHHhhHhhH-HHHHHHhc
Confidence 999999999999999866 99999999999987654222 222233333333 45555 44889999
Q ss_pred cch-hHHHHHHHHHHHHhcC-ccccCHHHHHHHHHHhHHHHhcCCCCccccCChhhHHHHHHHHHHHHHhhc-CCCHHHH
Q 036120 413 DGT-NKVMAMVIIQSIMKNS-TCISTAEKVEVLFELIKGLIKDLDGAAQDELDEEDFKEEQNSVARLIHMLY-NDDSEEM 489 (779)
Q Consensus 413 ~~~-rk~va~~il~~~l~~~-~~i~s~~~~~~ll~~~~~Li~~~~~~~~~~~~~~~~~~eQ~~var~vhli~-~~d~~~~ 489 (779)
+++ +..+-..|++.+.++. ..|+|+..++.+++.+++|.+..+-... .+++ ...-.++++|+.+++ +.|.|++
T Consensus 556 ~~~~~tsvc~~il~~f~k~~~~~i~D~~~~q~L~evc~tl~da~~~~~~---ed~k-R~~s~LI~~f~~mVdfg~~~eq~ 631 (930)
T KOG3682|consen 556 YDIQSTSVCSRILEIFSKTFTHTISDISACQFLIEVCRTLCDAYRLEES---EDVK-RAASQLICSFLSMVDFGTNLEQC 631 (930)
T ss_pred ccchhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHhhhhhh---hhhH-HHHHHHHHHHHHHHhhcccHHHH
Confidence 855 5678888999998875 5799999999999999999976553222 1122 234579999999999 8999999
Q ss_pred HHHHHHHHHHHhccCCccccccccHHHHHHHHHHHHhhhccCCCCCCCCCCChhHHHHHHHHHHHHhh----CCCChHHH
Q 036120 490 LKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDGDVAGEEEPATPKKIFQLLNQTIETLL----YVPSPEMA 565 (779)
Q Consensus 490 ~~il~~~r~~~~~gg~~ri~~t~P~Li~~~l~L~~~~~~~~~~~~~~~~~~~~k~if~fv~~~i~~L~----~~~~~~la 565 (779)
++++..+|..|+.-.+. +-.||-..-+||.+.... + ||--.|+..||..+. +...|...
T Consensus 632 L~f~vecRe~f~~~~~~-----li~LI~S~n~la~~t~K~-----g-------kK~a~Fvr~Cia~~~~TIPSv~~p~~r 694 (930)
T KOG3682|consen 632 LEFIVECREDFGLRQNS-----LIHLIESLNQLAHRTQKS-----G-------KKKADFVRVCIANLSLTIPSVRDPSRR 694 (930)
T ss_pred HHHHHHHHHHhcCchHH-----HHHHHHHHHHHHHHHHHh-----h-------hhHHHHHHHHHHHhheecccccChhhH
Confidence 99999999999876543 455666666776665421 1 344566666666552 22458999
Q ss_pred HHHHHHHHHHhhhCCCchhHHHHHHHHHHhhhccc-cCcH--HHHHHHHHHHHHHHhhcCCCccc
Q 036120 566 LRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEI-ADSK--AQVTAIHLIIGTLQRISVFGIEN 627 (779)
Q Consensus 566 lkL~Lq~A~~Ad~~~~~~iaYeFf~qAf~iyEe~i-sdS~--~Q~~al~~ii~tL~~~~~~~~e~ 627 (779)
++||||.|++|--.|+-+.+.+|+..|.+..+|-. .|-+ .-...+.-.|.-+.++-.|-+||
T Consensus 695 lnlyl~~~qvaLl~~~lsq~d~~~~~aIeyl~ev~ltdG~ks~~~~~~~~~ic~f~StL~~~P~n 759 (930)
T KOG3682|consen 695 LNLYLQNIQVALLANFLSQMDMSSVRAIEYLDEVSLTDGPKSSVCATVSPLICQFLSTLSFCPEN 759 (930)
T ss_pred hhhhhHHhHHHHHhChhhhHHHHHHHHHHHhhcccccCCCCCchHHHHHHHHHHHHHHheeCCCC
Confidence 99999999999999999999999999999988654 3443 33455555666666665554444
No 4
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=3.1e-16 Score=178.18 Aligned_cols=197 Identities=6% Similarity=-0.181 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHhHHHHHHHHHhhhhCCCCchhHHHHHHHhcchhHHHHHHHHHHHHH
Q 036120 36 LREALKYSAQMLSELRTSKLSPHKYYELYMRAFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVY 115 (779)
Q Consensus 36 L~dALkhas~mL~ELRts~LsPK~YYeLYm~V~d~L~~L~~yl~d~~~~g~~l~dLYE~VQyagnIlPRLYLmItVGs~y 115 (779)
.+.++++++.+..+.++.-+.|+.|++.|++..+|...|..++..+.-++..+.++|+.+++.+++.|+||..|++|-.+
T Consensus 148 d~~~Fvl~NF~EMNKLWVRmQHqGp~re~ekrekER~ELriLVG~nLvrLsQle~~~~~mY~~~vLp~iLEQvV~CrD~l 227 (760)
T KOG1107|consen 148 DAVEFVLINFTEMNKLWVRMQHQGPSREKEKREKERNELRILVGKNLVRLSQLEGVDLEMYRDDVLPRILEQVVNCRDEL 227 (760)
T ss_pred hHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHHHhhhHHHHHHhccccHHHHhccccHHHHHHHHhhhHHH
Confidence 56689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHhhcccchhHHHHHHHHHHHhccccCCCCC--CccccCCcChhhhHHHHHHhHHHHHHHHHHH
Q 036120 116 IKSKEAPAKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIG--SEYERDAETVMDAVEFVLQNFTEMNKLWVRM 193 (779)
Q Consensus 116 ik~~~~p~~eILkDLvEMcRGVQhPiRGLFLR~YL~q~~k~~LPd~~--s~~e~~~g~~~dsi~Fll~NF~EMNKLWVRl 193 (779)
.+.--........+..+||+|++||+||.|.+++..++++.++|..+ +.|+ ..++-.|+
T Consensus 228 aQeYLmeciiQvF~DefHLqTLd~~L~ac~~L~~~V~i~~~l~~l~dRLs~y~-t~~~e~~p------------------ 288 (760)
T KOG1107|consen 228 AQEYLMECIIQVFPDEFHLQTLDTLLGACPQLQPSVNIKILLIALVDRLSNYA-TSENEVLP------------------ 288 (760)
T ss_pred HHHHHHHHhhhccCcHHHHHhHHHHHHHHHhcCCCcchHHHHHHHhhhhhHHH-hccccCCc------------------
Confidence 99988888889999999999999999999999999999999999864 2222 11111111
Q ss_pred hhcCCCchhHhHHHHHHHHHHHhhhhhHHhhcccCCChHHHhhhhchHHHHHHHhcCCcchhhHhHhhhHhccCc
Q 036120 194 QHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKENVLPRVLEQVVNCKDELAQYYLMDCIIQVFPD 268 (779)
Q Consensus 194 QhqG~~rere~R~~ER~eL~iLVG~NLvrLSqLegv~~~~Y~~~iLP~iLeqIv~C~D~iAQeYLmd~IIQvFPD 268 (779)
+..+++|+++++.++.+++...-|.-...-..|.+.+.|.+..+++|.+|++.||||+
T Consensus 289 -----------------~~~~~~~f~~~~~~~~~vi~~r~dmpl~~~v~L~~sll~~~l~~ypdr~dy~dqvf~~ 346 (760)
T KOG1107|consen 289 -----------------APLQMEAFEKLSNAITKVIQSRPDMPLDDIVTLYVSLLNFTLKCYPDRLDYADQVFQG 346 (760)
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHHHHHHHhhHhhcCchHHHHHHHccC
Confidence 6778899999999999999999999999999999999999999999999999999999
No 5
>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=64.90 E-value=60 Score=34.32 Aligned_cols=109 Identities=21% Similarity=0.294 Sum_probs=60.5
Q ss_pred HhhhHhccCchhhHHhHHHHHhhccCCCCC----CCHHHHHHHHHHHHhhhhhhccCCCcchhchHHHHHHHHHHHHHHh
Q 036120 259 MDCIIQVFPDEYHLQTLETLLGACPQLQPT----VDIKTVLSRLMDRLSNYAVSSADVLPEFLQVEAFAKLSNAIGKVID 334 (779)
Q Consensus 259 md~IIQvFPDEfHL~TL~~lL~a~~~L~~~----V~i~~Il~~Li~RL~~y~~~~~~~~~~~~~~~lF~~F~~~i~~l~~ 334 (779)
+..+.+.||++|+- ||+++.-...+ +|+...+...|+++-. .+.+... .
T Consensus 106 ~~~v~~~y~~k~~~-----FL~~i~~~~~~~~~~~d~~~~i~~~I~~f~r-------------------~~~~~~s---~ 158 (219)
T PF14677_consen 106 LSTVCQRYPDKFSQ-----FLSAIDMTDDNAEEEKDLTERIQFQIRQFQR-------------------ELENFLS---S 158 (219)
T ss_dssp HHHHHHTSGGGHHH-----HHHHTS----STTTT-HHHHHHHHHHHHHHH-------------------HHHHHHH---S
T ss_pred HHHHHHHhhHHHHH-----HHHHhccccCCccccccHHHHHHHHHHHHHH-------------------HHhhccc---c
Confidence 45678899999874 88876532222 2444444444444321 1111111 2
Q ss_pred hCCCCchhhHHHHHHHHHHhhHHhcCCcchhHHHHHHHHHHHhccCCCCCChHHHHHHHHHH
Q 036120 335 AQVDMPIVGAISLYVSLLTFTLRVHPDRLDYVDQVLGACVKKLSSAPKLEDSRATKQVVALL 396 (779)
Q Consensus 335 ~~~~l~~~~~~~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~LL 396 (779)
...+...++++.|...+--|+-...|+... .++++.-+.+.+++.. +.++...+-+++||
T Consensus 159 ~~e~~~~K~~~~Lv~ils~L~~~l~~~s~~-~~q~~~W~~~~ck~~~-l~d~~~~k~ll~lL 218 (219)
T PF14677_consen 159 EEEDFNSKEAVLLVNILSQLSDHLDPSSDQ-FTQMLSWTLKFCKENS-LEDSSFCKGLLSLL 218 (219)
T ss_dssp --SS--SHHHHHHHHHHHHHTTSS-SSSSH-HHHHHHHHHHHHHS----S-HHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHhccCCCCHH-HHHHHHHHHHHHHhcC-CCcHHHHHHHHHHh
Confidence 222445677777777777777777787654 4579999999988864 56666667777776
No 6
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=63.09 E-value=3e+02 Score=32.14 Aligned_cols=199 Identities=12% Similarity=0.067 Sum_probs=88.8
Q ss_pred CcchhHHHHHHHHHHHHhcCccccCHHHHHHHHHHhHHHHhcCCCCccccCCh--hhHHHH----H-----HHHHHHHHh
Q 036120 412 DDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDE--EDFKEE----Q-----NSVARLIHM 480 (779)
Q Consensus 412 ~~~~rk~va~~il~~~l~~~~~i~s~~~~~~ll~~~~~Li~~~~~~~~~~~~~--~~~~~e----Q-----~~var~vhl 480 (779)
|-..|.+.|.++.+.+-+- ++ +.+..+....+-|+..... .+ .-. -++..+ | ..=+.+.+.
T Consensus 3 ~l~~R~~a~~~l~~~i~~~--~~---~~i~~iW~~~~DLi~~~~p--~e-~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~ 74 (464)
T PF11864_consen 3 PLSERIKAAEELCESIQKY--PL---SSIEEIWYAAKDLIDPNQP--SE-ARRAALELLIACIKRQDSSSGLMRAEFFRD 74 (464)
T ss_pred CHHHHHHHHHHHHHHHHhC--Cc---hHHHHHHHHHhhhcCCCCC--HH-HHHHHHHHHHHHHHccccccHHHHHHHHHH
Confidence 3456777778887776332 33 6666677777777643221 10 000 000000 0 011345555
Q ss_pred hcCCCHHHHHHHHHHHHHHHhccCCccccccccHHHHHHHHHHHHhh----------hccC----CCCCC--CCCCChhH
Q 036120 481 LYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQ----------NQDG----DVAGE--EEPATPKK 544 (779)
Q Consensus 481 i~~~d~~~~~~il~~~r~~~~~gg~~ri~~t~P~Li~~~l~L~~~~~----------~~~~----~~~~~--~~~~~~k~ 544 (779)
|.....+.-|.....+=+.+.++| +.|.+....+.--..+.+..+. .... ..... ........
T Consensus 75 I~~~~~~~d~~~~l~aL~~LT~~G-rdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (464)
T PF11864_consen 75 ISDPSNDDDFDLRLEALIALTDNG-RDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSD 153 (464)
T ss_pred HhcCCCchhHHHHHHHHHHHHcCC-cCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHH
Confidence 654333333556666667777888 5666644333332222222111 1100 00000 00123457
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhhhCCCchhHHHHHHHHHHhhhccccCcHHHHHHHHHHHHHHHhhcCC
Q 036120 545 IFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVF 623 (779)
Q Consensus 545 if~fv~~~i~~L~~~~~~~lalkL~Lq~A~~Ad~~~~~~iaYeFf~qAf~iyEe~isdS~~Q~~al~~ii~tL~~~~~~ 623 (779)
+|+|+..+|+.-.. ...+..+.-.++.+... |.-.+..- =+..++.++.-=|.-+..--+++.-+|.+|+++-+.
T Consensus 154 ll~~l~nviKfn~~-~l~e~~i~~lv~~i~~i--C~~Ts~~~-di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~ 228 (464)
T PF11864_consen 154 LLQFLVNVIKFNFN-YLDEDEISSLVDQICTI--CKSTSSED-DIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNS 228 (464)
T ss_pred HHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHH--HhccCcHH-HHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcc
Confidence 88888888887643 12233333333322222 11111111 123444444333332333345677777777777443
No 7
>PLN03217 transcription factor ATBS1; Provisional
Probab=51.78 E-value=29 Score=31.41 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=35.6
Q ss_pred CCCcccHHHHHHHHHHHHhhhccCCC---CCchhHHHHHHHHHHHHHHHh
Q 036120 718 GNTQITASAIQSLIELITSEMQSEST---TLDPADNAFFASTKRYIEFQK 764 (779)
Q Consensus 718 ~~~~it~~~in~LI~lI~~~l~~~~~---~~~~~~~~~f~~T~~yI~~~~ 764 (779)
|...||.+-|+.||...+.-++.... .......+-.+.||.||+.-.
T Consensus 13 ~s~risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLh 62 (93)
T PLN03217 13 GTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLH 62 (93)
T ss_pred CCCCCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHH
Confidence 44579999999999999998886542 122344567899999999753
No 8
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=37.95 E-value=7.1e+02 Score=29.04 Aligned_cols=225 Identities=9% Similarity=0.065 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHHHHhhCCC-CchhhHHHHHHHHHHhhHHhcCCcchhHHHHHHHHHHHhccCCCCCChHHHHHHHHHHH
Q 036120 319 VEAFAKLSNAIGKVIDAQVD-MPIVGAISLYVSLLTFTLRVHPDRLDYVDQVLGACVKKLSSAPKLEDSRATKQVVALLS 397 (779)
Q Consensus 319 ~~lF~~F~~~i~~l~~~~~~-l~~~~~~~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~LL~ 397 (779)
...+..|..++..+++-... ++-.++..++..++.+..+. ...+-+..+++..-... ..|.+++ ++...++..|-
T Consensus 148 ~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~T--s~~~di~~~L~vldaii-~y~~iP~-~sl~~~i~vLC 223 (464)
T PF11864_consen 148 ESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKST--SSEDDIEACLSVLDAII-TYGDIPS-ESLSPCIEVLC 223 (464)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHH-HcCcCCh-HHHHHHHHHHh
Confidence 34566666777777764433 45566777777776663222 11222233333322222 2343432 22222222221
Q ss_pred c--chhhhHHH----HHccCCcchhHHHHHHHHHHHH-hcCccccCHHHHHHHHHHhHHHHhcC--CCCccccCChhhHH
Q 036120 398 A--PLDKYNDI----LMDHLDDGTNKVMAMVIIQSIM-KNSTCISTAEKVEVLFELIKGLIKDL--DGAAQDELDEEDFK 468 (779)
Q Consensus 398 ~--pl~~~~~~----ll~~l~~~~rk~va~~il~~~l-~~~~~i~s~~~~~~ll~~~~~Li~~~--~~~~~~~~~~~~~~ 468 (779)
. .+..+... +=+++.......+...+++-+. .......++..+.+-..++.-++-.. ++.|. -.+.
T Consensus 224 si~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~-----l~~~ 298 (464)
T PF11864_consen 224 SIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPS-----LPFS 298 (464)
T ss_pred hHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcce-----eccc
Confidence 1 11122111 2233333333333344443332 33445677777777777777777654 22211 0111
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH-hccCCccccccccHHHHHHHHHHHHhhhccCCCCCCCCCCChhHHHH
Q 036120 469 EEQNSVARLIHMLYNDDSEEMLKIICTVRKHI-MTGGPKRLPFTVPPLVFSALRLVRQLQNQDGDVAGEEEPATPKKIFQ 547 (779)
Q Consensus 469 ~eQ~~var~vhli~~~d~~~~~~il~~~r~~~-~~gg~~ri~~t~P~Li~~~l~L~~~~~~~~~~~~~~~~~~~~k~if~ 547 (779)
-+..+.-+...+..+++-..++++..++..+ ++.|..-...+..+++..+.++...+...+ .++....+...+..
T Consensus 299 -~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~ 374 (464)
T PF11864_consen 299 -PSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFD---SWYSNSSSLDQLSS 374 (464)
T ss_pred -HHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccc---cccccccchHHHHH
Confidence 2357778888888888888889999999888 666643345556555555555444443321 11111111134555
Q ss_pred HHHHHHHHh
Q 036120 548 LLNQTIETL 556 (779)
Q Consensus 548 fv~~~i~~L 556 (779)
.+|+++..+
T Consensus 375 ~~~~l~~~i 383 (464)
T PF11864_consen 375 NLHSLLSSI 383 (464)
T ss_pred HHHHHHHHH
Confidence 666655554
No 9
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=36.10 E-value=2.6e+02 Score=25.81 Aligned_cols=54 Identities=15% Similarity=0.330 Sum_probs=46.0
Q ss_pred hhhHHhhcccCCChHHHhhhhchHHHHHHHhcCCcchhhHhHhhhHhccCchhhH
Q 036120 218 KNLHVLSQIEGVDLEMYKENVLPRVLEQVVNCKDELAQYYLMDCIIQVFPDEYHL 272 (779)
Q Consensus 218 ~NLvrLSqLegv~~~~Y~~~iLP~iLeqIv~C~D~iAQeYLmd~IIQvFPDEfHL 272 (779)
..+..+.--+|-+++.|-..+- .|..++-.|+.+++-+.+...|+..+|.+|+-
T Consensus 30 ~~l~~~k~~~~~sv~~y~~~~~-~i~~~L~~~g~~i~d~~~v~~iL~~Lp~~y~~ 83 (119)
T PF14223_consen 30 SQLENLKMKDGESVDEYISRLK-EIVDELRAIGKPISDEDLVSKILRSLPPSYDT 83 (119)
T ss_pred HHHHHHHhcccccHHHHHHHHH-HhhhhhhhcCCcccchhHHHHHHhcCCchhHH
Confidence 3445566567899999998766 49999999999999999999999999999984
No 10
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=30.09 E-value=89 Score=31.15 Aligned_cols=46 Identities=24% Similarity=0.447 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhh-cCCCCCchhHHHHHHH----HHhHHHHHHHHHhh
Q 036120 36 LREALKYSAQMLSELR-TSKLSPHKYYELYMRA----FDELRKLEMFFKDE 81 (779)
Q Consensus 36 L~dALkhas~mL~ELR-ts~LsPK~YYeLYm~V----~d~L~~L~~yl~d~ 81 (779)
-|.-++---.+|.+|| ...+.|..|-+||+++ |...++|-+|+.+.
T Consensus 95 Wi~~IRalR~~Lr~lrd~gkIdk~~YR~lY~~aKGg~fk~~~~L~~~i~~~ 145 (150)
T COG2147 95 WIKRIRALRRELRKLRDDGKIDKHTYRKLYRMAKGGAFKSKSHLKSYIEEA 145 (150)
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCccccHHHHHHHHHHh
Confidence 4455555566889998 4789999999999997 88999999998875
No 11
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.48 E-value=1.3e+03 Score=29.94 Aligned_cols=55 Identities=16% Similarity=0.089 Sum_probs=37.3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhccCCccccccccHHHHHHHHHHHHhhh
Q 036120 472 NSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQN 528 (779)
Q Consensus 472 ~~var~vhli~~~d~~~~~~il~~~r~~~~~gg~~ri~~t~P~Li~~~l~L~~~~~~ 528 (779)
.-+.|.+|++.+.+...++++|-.++--+.=-. .-.-++-|+|..+|..+-.+-.
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La--~~~n~LlPlvhq~W~~vie~~~ 857 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLA--TYHNLLLPLVHQTWPSVIECLL 857 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHh--ccchhHhHHHHhhhhHHHHHHh
Confidence 456799999999999999998887763222100 1122466888888887765543
No 12
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.53 E-value=70 Score=37.23 Aligned_cols=23 Identities=39% Similarity=0.362 Sum_probs=20.4
Q ss_pred hhcccchhHHHHHHHHHHHhccc
Q 036120 134 CRGVQHPIRGLFLRSYLAQVSRD 156 (779)
Q Consensus 134 cRGVQhPiRGLFLR~YL~q~~k~ 156 (779)
.||=|.|=|.||||.||+|-...
T Consensus 255 lKg~~spEraL~lRL~LLQGV~~ 277 (568)
T KOG2561|consen 255 LKGGQSPERALILRLELLQGVVA 277 (568)
T ss_pred ccCCCChhHHHHHHHHHHHHHHH
Confidence 58899999999999999997654
No 13
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.17 E-value=1.5e+03 Score=29.39 Aligned_cols=220 Identities=11% Similarity=0.098 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcCccccCHHHHHHHHHHhHHHHhcCCCCccccCChh----hHH------------HHHHHHHHHHHh
Q 036120 417 KVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDEE----DFK------------EEQNSVARLIHM 480 (779)
Q Consensus 417 k~va~~il~~~l~~~~~i~s~~~~~~ll~~~~~Li~~~~~~~~~~~~~~----~~~------------~eQ~~var~vhl 480 (779)
|.=|+.++..+ ++...+++..+...++.....+.++++.|- .++.. .|. ..=..+=+++|+
T Consensus 479 rarac~vl~~~--~~~df~d~~~l~~ale~t~~~l~~d~~lPV-~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L 555 (1010)
T KOG1991|consen 479 RARACWVLSQF--SSIDFKDPNNLSEALELTHNCLLNDNELPV-RVEAALALQSFISNQEQADEKVSAHVPPIMQELLKL 555 (1010)
T ss_pred HHHHHHHHHHH--HhccCCChHHHHHHHHHHHHHhccCCcCch-hhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHH
Confidence 55577777766 455677888888888877777765444331 11000 010 111234466677
Q ss_pred hcCCCHHHHHHHHHHHHHHHhccCCccccccccHHHHHHHHHHHHhhhccCCCCCCCCCCChhHHHHHHHHHHHHhhC-C
Q 036120 481 LYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDGDVAGEEEPATPKKIFQLLNQTIETLLY-V 559 (779)
Q Consensus 481 i~~~d~~~~~~il~~~r~~~~~gg~~ri~~t~P~Li~~~l~L~~~~~~~~~~~~~~~~~~~~k~if~fv~~~i~~L~~-~ 559 (779)
.+.-+.|.--..+..+=-.|+.-=..-..=.--.|+..+||++..- .+.++..+++.. .-.-+++.+.+.|.+ .
T Consensus 556 ~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~--~~~~~~~ddk~i---aA~GiL~Ti~Til~s~e 630 (1010)
T KOG1991|consen 556 SNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTS--EDEDESDDDKAI---AASGILRTISTILLSLE 630 (1010)
T ss_pred HHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhcc--CCCCccchHHHH---HHHHHHHHHHHHHHHHh
Confidence 6643333333334444344443210000000113455556655431 111222222111 112234433333322 1
Q ss_pred CChHHHHHHHHHHHHHhhhCCCchhHHHHHHHHHHhhhccccCc----HHHHHHHHHHHHHHHhhcCCCccchHHHHHHH
Q 036120 560 PSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADS----KAQVTAIHLIIGTLQRISVFGIENRDTLTHKA 635 (779)
Q Consensus 560 ~~~~lalkL~Lq~A~~Ad~~~~~~iaYeFf~qAf~iyEe~isdS----~~Q~~al~~ii~tL~~~~~~~~e~y~~L~tk~ 635 (779)
+.|++--.|+-.+--++...=-..+ -|||..+|.+-...---| -.=.+.+.+|...++.--.-.-+++-.+.++-
T Consensus 631 ~~p~vl~~le~~~l~vi~~iL~~~i-~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~ 709 (1010)
T KOG1991|consen 631 NHPEVLKQLEPIVLPVIGFILKNDI-TDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNY 709 (1010)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 4566666665555544443322233 267777776655332222 22234444444444332111123444455544
Q ss_pred HHHHHhccCc
Q 036120 636 TGYSARLLKK 645 (779)
Q Consensus 636 t~~askLLKK 645 (779)
+-|+-.-+.|
T Consensus 710 vt~g~~~~~s 719 (1010)
T KOG1991|consen 710 VTYGTPSLLS 719 (1010)
T ss_pred eeeCchhhhc
Confidence 4444444433
No 14
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=25.66 E-value=5.1e+02 Score=29.71 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhhhhhcc--C----CCcchhchHHHHHHHHHHHHHHhhCCC---------CchhhHHHHHHHHHHhh
Q 036120 291 IKTVLSRLMDRLSNYAVSSA--D----VLPEFLQVEAFAKLSNAIGKVIDAQVD---------MPIVGAISLYVSLLTFT 355 (779)
Q Consensus 291 i~~Il~~Li~RL~~y~~~~~--~----~~~~~~~~~lF~~F~~~i~~l~~~~~~---------l~~~~~~~l~~sll~l~ 355 (779)
+--++..|+.||..+..... + ..+. .+. ++-|++.++.-.+.|-. .-..++-.++..|+.--
T Consensus 165 l~lv~~eLi~Rl~~~~~~~~~~~~~~~~~~~--~lP-l~~~~~~id~H~~lr~~~~~~~~~L~~~a~QfRaIQrrlL~r~ 241 (377)
T PF14728_consen 165 LWLVLEELIRRLKEHFPKQGVKDRFKISFSG--PLP-LQEYFEIIDQHFELRQELKELEEELDERAQQFRAIQRRLLTRF 241 (377)
T ss_pred HHHHHHHHHHHHHHhccccCcccceEEecCC--CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66789999999997766521 1 1111 111 33344444443333221 12345555666666555
Q ss_pred HHhcCCcchhHHHHHHHHHHHhccCCCCCChHHHHHHHHHHHcchhhhHHHHHccCCcchhHHHHHHHHHHHHhcCcccc
Q 036120 356 LRVHPDRLDYVDQVLGACVKKLSSAPKLEDSRATKQVVALLSAPLDKYNDILMDHLDDGTNKVMAMVIIQSIMKNSTCIS 435 (779)
Q Consensus 356 l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~LL~~pl~~~~~~ll~~l~~~~rk~va~~il~~~l~~~~~i~ 435 (779)
-.-.|..++++|.+|+.+...+..... .......=+ ..-..+..-|..++..+++....+
T Consensus 242 kd~~p~~l~~L~~LLe~ty~~l~~~~d-----~~~~~~~~l--------------~~a~~~L~~~~~Ll~~L~~l~~~l- 301 (377)
T PF14728_consen 242 KDKNPAPLDNLDTLLEGTYRQLIALAD-----EIEELQANL--------------KRAGASLSCATQLLILLLKLRFNL- 301 (377)
T ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHH-----HHHHHHHHH--------------HHHhhhHHHHHHHHHHHHHhhcCC-
Confidence 556688899999999999887654321 000000000 001112333445555555555555
Q ss_pred CHHHHHHHHHHhHHHHhcCC
Q 036120 436 TAEKVEVLFELIKGLIKDLD 455 (779)
Q Consensus 436 s~~~~~~ll~~~~~Li~~~~ 455 (779)
+.++++.|=..+.|.+.|.+
T Consensus 302 ~~~~~~~l~s~~~~~v~d~~ 321 (377)
T PF14728_consen 302 NEDDVELLESVFSPSVQDST 321 (377)
T ss_pred CHHHHHHHHHHcCCCcCcCC
Confidence 88888888888888877654
No 15
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=23.40 E-value=1.2e+03 Score=26.83 Aligned_cols=218 Identities=12% Similarity=0.230 Sum_probs=118.2
Q ss_pred hhhHhccCchhhHHhHHHHHhhccC----------------CCCC-------CCHHHHHHHHHHHHhhhhh---hccCCC
Q 036120 260 DCIIQVFPDEYHLQTLETLLGACPQ----------------LQPT-------VDIKTVLSRLMDRLSNYAV---SSADVL 313 (779)
Q Consensus 260 d~IIQvFPDEfHL~TL~~lL~a~~~----------------L~~~-------V~i~~Il~~Li~RL~~y~~---~~~~~~ 313 (779)
+-|=+.||+|-.|..||+++..+.. -..+ -+.+.-+..|+.|+..--. .....|
T Consensus 8 ~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V 87 (383)
T PF04100_consen 8 DYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMV 87 (383)
T ss_pred HHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466899999999999999886532 0011 1244555666666664321 111111
Q ss_pred cc---------------hhchHHH---HHHHHHHHHHHhhCCCCchhhHHHHHHHHHHhhHHhcCCc-chhHHHHHHHHH
Q 036120 314 PE---------------FLQVEAF---AKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDR-LDYVDQVLGACV 374 (779)
Q Consensus 314 ~~---------------~~~~~lF---~~F~~~i~~l~~~~~~l~~~~~~~l~~sll~l~l~~yp~~-~~~vd~il~~~~ 374 (779)
.+ ...+.+| .++.+.+.++-..-..-.-.++..++.+..++.-..-|-+ .+.|..+++.+.
T Consensus 88 ~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~L~~~i~ 167 (383)
T PF04100_consen 88 QEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKSIPQIAELSKRID 167 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHH
Confidence 00 0012222 2233333333222222356777777777777774443422 445555555554
Q ss_pred HHhccCCCCCChHHHHHHHHHHH-----cc---hhhhHH--HHHccCCcchhHHHHHHHHHHHHh-------cCccccCH
Q 036120 375 KKLSSAPKLEDSRATKQVVALLS-----AP---LDKYND--ILMDHLDDGTNKVMAMVIIQSIMK-------NSTCISTA 437 (779)
Q Consensus 375 ~~l~~~~~~~~~~~~~~l~~LL~-----~p---l~~~~~--~ll~~l~~~~rk~va~~il~~~l~-------~~~~i~s~ 437 (779)
.....-. ......+..++. .| ...... .+++.|+++.|.++....++..++ .+....+.
T Consensus 168 ~l~~~L~----~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~~r~~li~wf~~~qL~eY~~iF~~~~e~~~L 243 (383)
T PF04100_consen 168 QLQNELK----EQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALGPDVREELIDWFCNKQLKEYRRIFRENDEAASL 243 (383)
T ss_pred HHHHHHH----HHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHcccccccch
Confidence 4322211 011111222220 11 111111 188999999999999999988886 35678899
Q ss_pred HHHHHHHHHhHHHHhcCCCCccccCChhhHHHHHHHHHHHHHhhc
Q 036120 438 EKVEVLFELIKGLIKDLDGAAQDELDEEDFKEEQNSVARLIHMLY 482 (779)
Q Consensus 438 ~~~~~ll~~~~~Li~~~~~~~~~~~~~~~~~~eQ~~var~vhli~ 482 (779)
+.+++=|..++-++++-+..- ..+=|.+-.-.+.+..+|++.-+
T Consensus 244 d~i~RRy~Wfkr~L~~~e~~~-~~iFP~~W~v~~~L~~~Fc~~Tr 287 (383)
T PF04100_consen 244 DNIDRRYAWFKRLLKNFEEKF-ANIFPPSWRVPERLCVEFCEITR 287 (383)
T ss_pred hhHHHHHHHHHHHHHHHHhhc-cccCCCcCcHHHHHHHHHHHHHH
Confidence 999999999999997644320 11112333455667777776665
No 16
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=23.25 E-value=2.8e+02 Score=24.62 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHhhHHhcCCcchhHHHHHHHHHHHhc
Q 036120 319 VEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDRLDYVDQVLGACVKKLS 378 (779)
Q Consensus 319 ~~lF~~F~~~i~~l~~~~~~l~~~~~~~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~ 378 (779)
..++ ...++..++++. +++++|++.+..+.+. ..+|+-.+.+..-|.+..+.+.
T Consensus 18 ~~L~-~~~~~~r~~i~~--~I~PEeIv~iH~~~v~---~l~~~~~~~v~~sld~LlEvm~ 71 (77)
T PF08673_consen 18 QSLY-QAQEFGRELIEK--DISPEEIVEIHKSAVQ---ELSPSLPEDVLDSLDFLLEVMI 71 (77)
T ss_dssp HHHH-HHHHHHHHHHHT--T--HHHHHHHHHHHHH---HH-TTS-HHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHc--CCCHHHHHHHHHHHHH---HHccccHHHHHHHHHHHHHHHH
Confidence 4566 788888889886 7999999999998876 5556656666666666666543
No 17
>cd01418 Ribosomal_L19e_A Ribosomal protein L19e, archaeal. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=21.95 E-value=1.5e+02 Score=29.54 Aligned_cols=42 Identities=31% Similarity=0.591 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhhc-CCCCCchhHHHHHHH----HHhHHHHHHHHHhh
Q 036120 40 LKYSAQMLSELRT-SKLSPHKYYELYMRA----FDELRKLEMFFKDE 81 (779)
Q Consensus 40 Lkhas~mL~ELRt-s~LsPK~YYeLYm~V----~d~L~~L~~yl~d~ 81 (779)
++---.+|.+||. ..+.+..|-+||+.+ |....+|..|+.+.
T Consensus 96 iR~lRr~Lk~~R~~~kId~~~Yr~lY~kaKGn~Fkn~~~L~~~I~~~ 142 (145)
T cd01418 96 IRALRRYLKELRDKGKIDKKTYRKLYRKAKGGSFRSLSHLKSYLKQH 142 (145)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 3444458899995 569999999999997 99999999998774
No 18
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=21.58 E-value=1.4e+02 Score=33.17 Aligned_cols=46 Identities=28% Similarity=0.466 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhhhc-CCCCCchhHHHHHHH----HHhHHHHHHHHHhhh
Q 036120 37 REALKYSAQMLSELRT-SKLSPHKYYELYMRA----FDELRKLEMFFKDES 82 (779)
Q Consensus 37 ~dALkhas~mL~ELRt-s~LsPK~YYeLYm~V----~d~L~~L~~yl~d~~ 82 (779)
|.-++---.+|.+||. ..+.+..|-+||+.+ |....+|..|+.+..
T Consensus 96 IrRIRaLRRlLKklRd~gKIDkh~YR~LYrKAKGn~FKNK~~L~e~I~k~K 146 (357)
T PTZ00436 96 MRRLRILRRLLRKYREEKKIDRHIYRELYVKAKGNVFRNKRNLMEHIHKVK 146 (357)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCccCcHHHHHHHHHHHH
Confidence 3344444568999995 569999999999997 999999999988753
Done!