Query 036120
Match_columns 779
No_of_seqs 120 out of 196
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 16:19:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r17_C Vacuolar protein sortin 100.0 5.7E-93 1.9E-97 754.8 19.7 289 466-763 1-298 (298)
2 3opb_A SWI5-dependent HO expre 70.3 1.1E+02 0.0036 36.8 17.5 229 244-499 138-404 (778)
3 3ro3_A PINS homolog, G-protein 65.2 63 0.0022 27.4 14.3 134 545-686 28-161 (164)
4 3ro3_A PINS homolog, G-protein 61.0 76 0.0026 26.9 15.2 119 561-687 4-122 (164)
5 3ulq_A Response regulator aspa 55.4 1.9E+02 0.0064 29.7 18.5 136 546-688 123-258 (383)
6 3q15_A PSP28, response regulat 46.3 2.6E+02 0.0089 28.6 15.4 137 546-689 121-257 (378)
7 3u3w_A Transcriptional activat 46.1 2.3E+02 0.0078 28.0 19.6 139 544-688 133-271 (293)
8 3edt_B KLC 2, kinesin light ch 46.0 1.9E+02 0.0066 27.1 14.8 137 585-736 20-159 (283)
9 3gw4_A Uncharacterized protein 42.4 1.9E+02 0.0065 25.9 15.7 138 544-689 44-182 (203)
10 1bl1_A Parathyroid hormone rec 36.2 9 0.00031 27.3 0.4 15 100-114 15-29 (31)
11 3ulq_A Response regulator aspa 35.9 3.7E+02 0.013 27.4 24.1 239 469-735 11-255 (383)
12 3ro2_A PINS homolog, G-protein 34.3 3.1E+02 0.011 26.1 20.9 220 483-736 56-295 (338)
13 2hye_C Cullin-4A, CUL-4A; beta 32.3 4.2E+02 0.015 31.2 14.2 27 232-258 225-251 (759)
14 4hat_C Exportin-1; heat repeat 31.0 7.8E+02 0.027 30.0 16.6 43 543-585 822-866 (1023)
15 4a1s_A PINS, partner of inscut 27.4 4.9E+02 0.017 26.2 19.0 195 513-737 45-256 (411)
16 3q15_A PSP28, response regulat 27.0 5.1E+02 0.018 26.3 20.7 196 469-687 11-215 (378)
17 4b4t_O 26S proteasome regulato 25.3 4.3E+02 0.015 28.4 11.7 130 483-620 89-225 (393)
18 3nf1_A KLC 1, kinesin light ch 24.2 4.7E+02 0.016 24.8 16.4 157 566-736 27-185 (311)
19 3gw4_A Uncharacterized protein 21.8 4.2E+02 0.014 23.5 15.0 154 564-735 24-178 (203)
20 2ifu_A Gamma-SNAP; membrane fu 21.3 6.1E+02 0.021 25.1 18.1 114 560-686 30-147 (307)
No 1
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.7e-93 Score=754.81 Aligned_cols=289 Identities=42% Similarity=0.687 Sum_probs=268.3
Q ss_pred hHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhccCCccccccccHHHHHHHHHHHHhhhccCCCCCCCCCCChhHH
Q 036120 466 DFKEEQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDGDVAGEEEPATPKKI 545 (779)
Q Consensus 466 ~~~~eQ~~var~vhli~~~d~~~~~~il~~~r~~~~~gg~~ri~~t~P~Li~~~l~L~~~~~~~~~~~~~~~~~~~~k~i 545 (779)
||.+||++|||+||+++++||+.||+||..+|+||++||++|++||+|||||++|+|+|+++..+..+..|+ ..++++
T Consensus 1 ef~eeQ~~varliHli~~~d~d~~f~il~~~rk~~~~gg~~Ri~~TlPpLvf~~l~L~r~~~~~~~~d~~~~--~~~~ki 78 (298)
T 2r17_C 1 DFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWE--KKCQKI 78 (298)
T ss_dssp CTTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHTTTTTCSSHH--HHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCccceeecccHHHHHHHHHHHHHHhcccchhhHH--HHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999987643222222 346799
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHHhhhCCC---chhHHHHHHHHHHhhhccccCcHHHHHHHHHHHHHHHhhcC
Q 036120 546 FQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDL---EPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISV 622 (779)
Q Consensus 546 f~fv~~~i~~L~~~~~~~lalkL~Lq~A~~Ad~~~~---~~iaYeFf~qAf~iyEe~isdS~~Q~~al~~ii~tL~~~~~ 622 (779)
|+|+|++|+.|+..+.|+++||||||||.+||++|+ +++|||||+|||+||||+|+|||+|++||.+|||||+++|+
T Consensus 79 f~fv~~~i~~L~~~~~~elalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdSk~Q~~al~~ii~tL~~~~~ 158 (298)
T 2r17_C 79 FSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKC 158 (298)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHccC
Confidence 999999999996557799999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCC-----CCCCCcchhhHHHHHHHHHHHHHHHHHHhhhccCC
Q 036120 623 FGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVD-----DQDGIKDGERVLLCLKRALRIANAAQQMANVARGS 697 (779)
Q Consensus 623 ~~~e~y~~L~tk~t~~askLLKK~dQcrav~~cshLfw~~-----~~~~~~d~krVleCLqkslkiAd~~~d~~~~~~~~ 697 (779)
|++||||+|+||||+||||||||||||||||+||||||++ +.+++||||||+|||||||||||+||| +
T Consensus 159 f~~enye~L~tk~t~~askLLKK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d-------~ 231 (298)
T 2r17_C 159 FSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-------P 231 (298)
T ss_dssp CCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCC-------H
T ss_pred CCHhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhC-------h
Confidence 9999999999999999999999999999999999999984 234689999999999999999999999 8
Q ss_pred CCchhHHHHHHhhhhhhhccCCCcccHHHHHHHHHHHHhhhccCC-CCCchhHHHHHHHHHHHHHHH
Q 036120 698 SGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQSES-TTLDPADNAFFASTKRYIEFQ 763 (779)
Q Consensus 698 ~~~~~LfveILn~~lyf~~~~~~~it~~~in~LI~lI~~~l~~~~-~~~~~~~~~~f~~T~~yI~~~ 763 (779)
.++++|||||||+|+|||++||++||++||||||++|++|+.+++ +++.+++..||+||++||+.|
T Consensus 232 ~~~v~LfveILn~ylyff~~g~~~Vt~~~in~LI~lI~~~l~~~~~~~~~~~~~~~f~~tl~yI~~~ 298 (298)
T 2r17_C 232 SLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR 298 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCTTSCHHHHHHHHHHHHTTTTSSCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHHHhhhhCCCCcccHHHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999997765 344588999999999999854
No 2
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=70.33 E-value=1.1e+02 Score=36.77 Aligned_cols=229 Identities=12% Similarity=0.161 Sum_probs=121.1
Q ss_pred HHHHhcCCcchhhHhHhhhHhc-------cCchhhHHhHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhccCCCcch
Q 036120 244 EQVVNCKDELAQYYLMDCIIQV-------FPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRLSNYAVSSADVLPEF 316 (779)
Q Consensus 244 eqIv~C~D~iAQeYLmd~IIQv-------FPDEfHL~TL~~lL~a~~~L~~~V~i~~Il~~Li~RL~~y~~~~~~~~~~~ 316 (779)
...+.-.+...-.|++-|+.|+ ||| .++ |++-+..-....+++.++--..-|+-.-.+
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~-~~~-----l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~--------- 202 (778)
T 3opb_A 138 QIRIHYGEDTHVTYLLSIILQLLNKFKYNFKE-VRF-----LVKELILRISEDEVKSMMLIIFAELQSSFQ--------- 202 (778)
T ss_dssp HHHHHHTCSSCHHHHHHHHHHHHHHSCCCSTT-TTH-----HHHHHHTTTTCHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHhhcCCCcchhHHHHHHHHHHHHcCccccc-hhh-----HHHHhccccChhhhHHHHHHHHHHHHHhCc---------
Confidence 4446644444889999999996 777 544 444444333345666665555555442111
Q ss_pred hchHHHHHHHHHHHHHH-hhCCCCchhhHHHHHHHHHHhhHHhcCCcchhHHHHHH------HHHHHhccCCCCCChHHH
Q 036120 317 LQVEAFAKLSNAIGKVI-DAQVDMPIVGAISLYVSLLTFTLRVHPDRLDYVDQVLG------ACVKKLSSAPKLEDSRAT 389 (779)
Q Consensus 317 ~~~~lF~~F~~~i~~l~-~~~~~l~~~~~~~l~~sll~l~l~~yp~~~~~vd~il~------~~~~~l~~~~~~~~~~~~ 389 (779)
-+-.+.|.+++..++ |+.++..-.+++..+..+ -.+||=-++--..+|- ...+++... .+....
T Consensus 203 --~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l----~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~---~~~~~~ 273 (778)
T 3opb_A 203 --KDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTL----SELYPSLTTLCSEIFLTKGLSKLFKKRVFEE---QDLQFT 273 (778)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHH----HHHTTTTHHHHHHHHSTTTHHHHHHHHHHSS---CCHHHH
T ss_pred --hHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHH----HHHhcCCHHHHHHHHccccHHHHHHHHHhcc---cchHHH
Confidence 133566778888444 544444344443333322 2356644433333321 122222211 223445
Q ss_pred HHHHHHHHcch----------hhhHHHHHccCCcchhHHHHHHHHHHHHhc-CccccCHHHHHHHHHHhHHHHhcCCCCc
Q 036120 390 KQVVALLSAPL----------DKYNDILMDHLDDGTNKVMAMVIIQSIMKN-STCISTAEKVEVLFELIKGLIKDLDGAA 458 (779)
Q Consensus 390 ~~l~~LL~~pl----------~~~~~~ll~~l~~~~rk~va~~il~~~l~~-~~~i~s~~~~~~ll~~~~~Li~~~~~~~ 458 (779)
..++++|..-| ++|...|...+..+.-+..|.-++-++-.. +..-.+ +..+.+.+...+...+...
T Consensus 274 ~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~s---i~~La~~~~~~L~~~~~~~ 350 (778)
T 3opb_A 274 KELLRLLSSACIDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCIN---LKQLSEIFINAISRRIVPK 350 (778)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCC---HHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCc---HHHHHHHHHHHHhcCCccH
Confidence 56777777532 344333555555544455555555554432 222222 3345565655555432100
Q ss_pred ------------cccCChhhHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHH
Q 036120 459 ------------QDELDEEDFKEEQNSVARLIHMLYN-DDSEEMLKIICTVRKH 499 (779)
Q Consensus 459 ------------~~~~~~~~~~~eQ~~var~vhli~~-~d~~~~~~il~~~r~~ 499 (779)
.+....+.+.++|..+-+++.++.+ +|...+|..+..+-+-
T Consensus 351 ~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NL 404 (778)
T 3opb_A 351 VEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANL 404 (778)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 0112335788889999999999994 7777888888776543
No 3
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=65.21 E-value=63 Score=27.39 Aligned_cols=134 Identities=11% Similarity=0.087 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhhhCCCchhHHHHHHHHHHhhhccccCcHHHHHHHHHHHHHHHhhcCCC
Q 036120 545 IFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFG 624 (779)
Q Consensus 545 if~fv~~~i~~L~~~~~~~lalkL~Lq~A~~Ad~~~~~~iaYeFf~qAf~iyEe~isdS~~Q~~al~~ii~tL~~~~~~~ 624 (779)
-.++..+.+........+......+..-|.+.-..|--+-|.++|.+|+.++++ ..+...+..+...+.........+
T Consensus 28 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~- 105 (164)
T 3ro3_A 28 AVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-LKDRAVEAQSCYSLGNTYTLLQDY- 105 (164)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCH-
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHhhH-
Confidence 344444444443222334555567777777777888888888999999999974 355555555555544444443321
Q ss_pred ccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 036120 625 IENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANA 686 (779)
Q Consensus 625 ~e~y~~L~tk~t~~askLLKK~dQcrav~~cshLfw~~~~~~~~d~krVleCLqkslkiAd~ 686 (779)
+.-.....++...+.+.-..+..+.+...-+.+++.. .+.+...+++++|++++..
T Consensus 106 -~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 106 -EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL-----GNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHHHHH
Confidence 2222233333333333333455666666667666643 3678999999999998865
No 4
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=61.01 E-value=76 Score=26.87 Aligned_cols=119 Identities=15% Similarity=0.089 Sum_probs=72.1
Q ss_pred ChHHHHHHHHHHHHHhhhCCCchhHHHHHHHHHHhhhccccCcHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHH
Q 036120 561 SPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSA 640 (779)
Q Consensus 561 ~~~lalkL~Lq~A~~Ad~~~~~~iaYeFf~qAf~iyEe~isdS~~Q~~al~~ii~tL~~~~~~~~e~y~~L~tk~t~~as 640 (779)
.+......+..-|.+--..|--+-|-+.+.+|+.++++ ..+......+...+.........+ +.-.....++...+.
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERIAYSNLGNAYIFLGEF--ETASEYYKKTLLLAR 80 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHH
Confidence 34455556666666666677777777888899888875 455555555555555444443322 222223333333333
Q ss_pred hccCchhhHHHHHHhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q 036120 641 RLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAA 687 (779)
Q Consensus 641 kLLKK~dQcrav~~cshLfw~~~~~~~~d~krVleCLqkslkiAd~~ 687 (779)
+.-..+.++.+.+.-+.+++.. .+-+...++++++++++...
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~~~~~ 122 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTLL-----QDYEKAIDYHLKHLAIAQEL 122 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHT
T ss_pred HhCCcHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHc
Confidence 3333344566666666666643 36788999999999998764
No 5
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=55.41 E-value=1.9e+02 Score=29.66 Aligned_cols=136 Identities=13% Similarity=0.169 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHHhhhCCCchhHHHHHHHHHHhhhccccCcHHHHHHHHHHHHHHHhhcCCCc
Q 036120 546 FQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGI 625 (779)
Q Consensus 546 f~fv~~~i~~L~~~~~~~lalkL~Lq~A~~Ad~~~~~~iaYeFf~qAf~iyEe~isdS~~Q~~al~~ii~tL~~~~~~~~ 625 (779)
.++..+.+........+......+..-|.+--..|--+-|.+++.+|+.++++.-........++..+.........+
T Consensus 123 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-- 200 (383)
T 3ulq_A 123 IKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQY-- 200 (383)
T ss_dssp HHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCH--
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCH--
Confidence 344444443332223334344555666666667777788889999999999976332555556666655555544432
Q ss_pred cchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 036120 626 ENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQ 688 (779)
Q Consensus 626 e~y~~L~tk~t~~askLLKK~dQcrav~~cshLfw~~~~~~~~d~krVleCLqkslkiAd~~~ 688 (779)
+.-...-.++...+.+.=..+..+.+...-+.+++.. .+-+.-++++++|++++...-
T Consensus 201 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-----g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 201 EDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ-----SQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHhhc
Confidence 2222222233333333333445556666667777643 477899999999999977653
No 6
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=46.31 E-value=2.6e+02 Score=28.63 Aligned_cols=137 Identities=11% Similarity=0.117 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHHhhhCCCchhHHHHHHHHHHhhhccccCcHHHHHHHHHHHHHHHhhcCCCc
Q 036120 546 FQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGI 625 (779)
Q Consensus 546 f~fv~~~i~~L~~~~~~~lalkL~Lq~A~~Ad~~~~~~iaYeFf~qAf~iyEe~isdS~~Q~~al~~ii~tL~~~~~~~~ 625 (779)
..+..+.+..+.....+......+..-|.+--..|--+-|.+++.+|+.++++.-........+...+.........+.
T Consensus 121 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~- 199 (378)
T 3q15_A 121 IGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYD- 199 (378)
T ss_dssp HHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHH-
Confidence 3444444444332233444455666667777777888888899999999998654334445555555544444443321
Q ss_pred cchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 036120 626 ENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQ 689 (779)
Q Consensus 626 e~y~~L~tk~t~~askLLKK~dQcrav~~cshLfw~~~~~~~~d~krVleCLqkslkiAd~~~d 689 (779)
.-...-.++...+.+.=..+..+.+...-+.++... .+-+.-++++++|++++....+
T Consensus 200 -~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-----~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 200 -KALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS-----GDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHCG
T ss_pred -HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHhhCC
Confidence 112222233333333323334455555556666543 3678899999999998877644
No 7
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=46.14 E-value=2.3e+02 Score=27.96 Aligned_cols=139 Identities=12% Similarity=-0.023 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhhhCCCchhHHHHHHHHHHhhhccccCcHHHHHHHHHHHHHHHhhcCC
Q 036120 544 KIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVF 623 (779)
Q Consensus 544 ~if~fv~~~i~~L~~~~~~~lalkL~Lq~A~~Ad~~~~~~iaYeFf~qAf~iyEe~isdS~~Q~~al~~ii~tL~~~~~~ 623 (779)
+-.++..+.+...............|..-|.+-...|--+-|.++|.+|+.++++.-.+......++..+..++.+...+
T Consensus 133 ~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 3u3w_A 133 YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH
Confidence 44555555555322223333445566667777777777788889999999998854345555555666555555444322
Q ss_pred CccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 036120 624 GIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQ 688 (779)
Q Consensus 624 ~~e~y~~L~tk~t~~askLLKK~dQcrav~~cshLfw~~~~~~~~d~krVleCLqkslkiAd~~~ 688 (779)
. .-.....++-..+.+.=..+....+.+.-+..++... ++-+..++++++|+.+++..-
T Consensus 213 ~--~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g----~~~~~A~~~~~~Al~i~~~~~ 271 (293)
T 3u3w_A 213 E--ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE----YEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp H--HHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHTT
T ss_pred H--HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhC----CcHHHHHHHHHHHHHHHHHhC
Confidence 1 1111222222222222223344666666777776431 123789999999999999753
No 8
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=46.04 E-value=1.9e+02 Score=27.06 Aligned_cols=137 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhccccCc-HHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHhc--cCchhhHHHHHHhhhhcCC
Q 036120 585 AYEFFTQAFMLYEEEIADS-KAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARL--LKKPDQCRAVYACSHLFWV 661 (779)
Q Consensus 585 aYeFf~qAf~iyEe~isdS-~~Q~~al~~ii~tL~~~~~~~~e~y~~L~tk~t~~askL--LKK~dQcrav~~cshLfw~ 661 (779)
|-++|.+|+.+++...... .....++..+...+..... -+.-.....++...+.+. -..|+.+++...-+.+++.
T Consensus 20 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (283)
T 3edt_B 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK--YKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97 (283)
T ss_dssp HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhhhhhhhccCCCcccHHHHHHHHHHHHh
Q 036120 662 DDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITS 736 (779)
Q Consensus 662 ~~~~~~~d~krVleCLqkslkiAd~~~d~~~~~~~~~~~~~LfveILn~~lyf~~~~~~~it~~~in~LI~lI~~ 736 (779)
.. +-+..+++++++++++.... +..+-....-..+....|+..|...=...++...+++.+.
T Consensus 98 ~g-----~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 98 RG-----KYKEAEPLCKRALEIREKVL--------GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp TT-----CHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred hc-----cHHHHHHHHHHHHHHHHHHc--------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
No 9
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=42.35 E-value=1.9e+02 Score=25.93 Aligned_cols=138 Identities=10% Similarity=-0.043 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhhhCCCchhHHHHHHHHHHhhhccccCcH-HHHHHHHHHHHHHHhhcC
Q 036120 544 KIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSK-AQVTAIHLIIGTLQRISV 622 (779)
Q Consensus 544 ~if~fv~~~i~~L~~~~~~~lalkL~Lq~A~~Ad~~~~~~iaYeFf~qAf~iyEe~isdS~-~Q~~al~~ii~tL~~~~~ 622 (779)
+-..+..+.+........+......+..-|.+.-..|-.+-|.+.|.+|+.+++ ...|.. ....++..+..+......
T Consensus 44 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~ 122 (203)
T 3gw4_A 44 EARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALHFGD 122 (203)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCccHHHHHHHHHHHHHHHHHhCC
Confidence 344555555555544344555566677777777788888888899999999998 556443 445555554444444332
Q ss_pred CCccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 036120 623 FGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQ 689 (779)
Q Consensus 623 ~~~e~y~~L~tk~t~~askLLKK~dQcrav~~cshLfw~~~~~~~~d~krVleCLqkslkiAd~~~d 689 (779)
+ +.-.....++...+.+.=.....+.+...-+.+++.. .+.....+++++|++++...-+
T Consensus 123 ~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~ 182 (203)
T 3gw4_A 123 L--AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE-----KNLLEAQQHWLRARDIFAELED 182 (203)
T ss_dssp H--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTC
T ss_pred H--HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC-----cCHHHHHHHHHHHHHHHHHcCC
Confidence 2 2222233333333333333444566666677777653 3678899999999999987544
No 10
>1bl1_A Parathyroid hormone receptor; micelle structures, calciotropic hormones, structures; NMR {Homo sapiens} SCOP: j.15.1.1
Probab=36.20 E-value=9 Score=27.30 Aligned_cols=15 Identities=33% Similarity=0.549 Sum_probs=12.1
Q ss_pred chhHHHHHHHHHHHH
Q 036120 100 NILPRLYLLCTVGSV 114 (779)
Q Consensus 100 nIlPRLYLmItVGs~ 114 (779)
.+-+|||+|=|||=.
T Consensus 15 e~FeRL~~iYTVGYS 29 (31)
T 1bl1_A 15 EVFDRLGMIYTVGYS 29 (31)
T ss_dssp HHHHSSHHHHHHHHH
T ss_pred HHHhheeeEEEEeee
Confidence 356899999999943
No 11
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=35.88 E-value=3.7e+02 Score=27.38 Aligned_cols=239 Identities=9% Similarity=0.009 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhccCC-ccccccccHHHHHHHHHHHHhhhccCCCCCCCCCCChhHHHH
Q 036120 469 EEQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGP-KRLPFTVPPLVFSALRLVRQLQNQDGDVAGEEEPATPKKIFQ 547 (779)
Q Consensus 469 ~eQ~~var~vhli~~~d~~~~~~il~~~r~~~~~gg~-~ri~~t~P~Li~~~l~L~~~~~~~~~~~~~~~~~~~~k~if~ 547 (779)
+...++......|...|.++-..++..+.+.+.+... ..+..-+--+-+....+...+........... ......|+
T Consensus 11 ~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~--~~~~~~~~ 88 (383)
T 3ulq_A 11 SIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQ--PRLSDLLL 88 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGS--CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccc--cchhhHHH
Confidence 4567888888899999999999999999999887632 22221121122222222222221110000000 11224444
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHHhhhCCCchhHHHHHHHHHHhhhccccCcHHHHHHHHHHHHHHHhhcCCCccc
Q 036120 548 LLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIEN 627 (779)
Q Consensus 548 fv~~~i~~L~~~~~~~lalkL~Lq~A~~Ad~~~~~~iaYeFf~qAf~iyEe~isdS~~Q~~al~~ii~tL~~~~~~~~e~ 627 (779)
-+.. ........+....+..-|...-..|--+-|.++|.+|+.+++. +.|......+...+.........
T Consensus 89 ~i~~----~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~~~~~~~----- 158 (383)
T 3ulq_A 89 EIDK----KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIF-VKDRIEKAEFFFKMSESYYYMKQ----- 158 (383)
T ss_dssp HHHH----HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHh----cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC-----
Confidence 3322 1110112333445555677777778888888999999999884 56766666666665555544332
Q ss_pred hHHHHHHHHHHHHhccC-----chhhHHHHHHhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhhhccCCCCchh
Q 036120 628 RDTLTHKATGYSARLLK-----KPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVV 702 (779)
Q Consensus 628 y~~L~tk~t~~askLLK-----K~dQcrav~~cshLfw~~~~~~~~d~krVleCLqkslkiAd~~~d~~~~~~~~~~~~~ 702 (779)
|+ .+.+....|-++.+ .+..+.+...-+..+... .+-+.-++++++|++++...-+ ...
T Consensus 159 ~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~----------~~~ 222 (383)
T 3ulq_A 159 TY-FSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL-----KQYEDAISHFQKAYSMAEAEKQ----------PQL 222 (383)
T ss_dssp HH-HHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTC----------HHH
T ss_pred HH-HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHcCC----------hHH
Confidence 22 23333344444443 334445555555555532 4678999999999999876422 111
Q ss_pred HHHHHHhhhhhhhccCCCcccHHHHHHHHHHHH
Q 036120 703 LFVEILNKYLYFFEKGNTQITASAIQSLIELIT 735 (779)
Q Consensus 703 LfveILn~~lyf~~~~~~~it~~~in~LI~lI~ 735 (779)
.-.-..|....|+..|...-..++.+..+++.+
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 112223444455555555555555555555443
No 12
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=34.26 E-value=3.1e+02 Score=26.12 Aligned_cols=220 Identities=11% Similarity=-0.017 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCccccccccHHHHHHHHHHHHhhhccCCCCCCCCCCChhHHHHHHHHHHHHhhCCCCh
Q 036120 483 NDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDGDVAGEEEPATPKKIFQLLNQTIETLLYVPSP 562 (779)
Q Consensus 483 ~~d~~~~~~il~~~r~~~~~gg~~ri~~t~P~Li~~~l~L~~~~~~~~~~~~~~~~~~~~k~if~fv~~~i~~L~~~~~~ 562 (779)
..+++.-.+.+..+.+.....+. -|..+.....++..+... + ...+-.++..+.+........+
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~l~~~~~~~-g---------~~~~A~~~~~~al~~~~~~~~~ 119 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTIGD------QLGEAKASGNLGNTLKVL-G---------NFDEAIVCCQRHLDISRELNDK 119 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTC------HHHHHHHHHHHHHHHHHT-T---------CHHHHHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHHhhcccc------cHHHHHHHHHHHHHHHHc-c---------CHHHHHHHHHHHHHHHHHhcCc
Confidence 44666666666665555444442 233334444444443322 1 1123444455544444322334
Q ss_pred HHHHHHHHHHHHHhhhCCC--------------------chhHHHHHHHHHHhhhccccCcHHHHHHHHHHHHHHHhhcC
Q 036120 563 EMALRLYLQCAEAANDCDL--------------------EPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISV 622 (779)
Q Consensus 563 ~lalkL~Lq~A~~Ad~~~~--------------------~~iaYeFf~qAf~iyEe~isdS~~Q~~al~~ii~tL~~~~~ 622 (779)
......+..-|.+-...|- -+-|.+.+.+|+.++++ ..+......+...+.........
T Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 198 (338)
T 3ro2_A 120 VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA-LGDRAAQGRAFGNLGNTHYLLGN 198 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhCC
Confidence 4444455555555444444 45555666666666653 34444445555555444444332
Q ss_pred CCccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhhhccCCCCchh
Q 036120 623 FGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVV 702 (779)
Q Consensus 623 ~~~e~y~~L~tk~t~~askLLKK~dQcrav~~cshLfw~~~~~~~~d~krVleCLqkslkiAd~~~d~~~~~~~~~~~~~ 702 (779)
+ +.-.....++...+.+.-..+....+.+.-+.+++.. .+.+...++++++++++...-+ ...
T Consensus 199 ~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~----------~~~ 261 (338)
T 3ro2_A 199 F--RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL-----GEFETASEYYKKTLLLARQLKD----------RAV 261 (338)
T ss_dssp H--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHTTC----------HHH
T ss_pred H--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhhcc----------hhH
Confidence 2 1222223333333333333444555666556666543 3678899999999998876421 111
Q ss_pred HHHHHHhhhhhhhccCCCcccHHHHHHHHHHHHh
Q 036120 703 LFVEILNKYLYFFEKGNTQITASAIQSLIELITS 736 (779)
Q Consensus 703 LfveILn~~lyf~~~~~~~it~~~in~LI~lI~~ 736 (779)
...-..+....|+..|...=-.++++..+++...
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 1112223444556666655556666666666544
No 13
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=32.26 E-value=4.2e+02 Score=31.25 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=18.0
Q ss_pred HHHhhhhchHHHHHHHhcCCcchhhHh
Q 036120 232 EMYKENVLPRVLEQVVNCKDELAQYYL 258 (779)
Q Consensus 232 ~~Y~~~iLP~iLeqIv~C~D~iAQeYL 258 (779)
+.|.+.+.|.+|+..-..=-..||+|+
T Consensus 225 ~vY~~~FE~~fL~~T~~fY~~e~~~~l 251 (759)
T 2hye_C 225 QVYKDSFELKFLEETNCLYAAEGQRLM 251 (759)
T ss_dssp TCHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999886544434444443
No 14
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=31.01 E-value=7.8e+02 Score=30.05 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHHhhhCCCchhH
Q 036120 543 KKIFQLLNQTIETLLY--VPSPEMALRLYLQCAEAANDCDLEPVA 585 (779)
Q Consensus 543 k~if~fv~~~i~~L~~--~~~~~lalkL~Lq~A~~Ad~~~~~~ia 585 (779)
...|+++++++..--. ...|...++++++|+..|-.....+++
T Consensus 822 ~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~ 866 (1023)
T 4hat_C 822 VEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVE 866 (1023)
T ss_dssp HHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHH
Confidence 3556666654443200 124688899999999999887765444
No 15
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=27.37 E-value=4.9e+02 Score=26.24 Aligned_cols=195 Identities=11% Similarity=0.060 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhhhccCCCCCCCCCCChhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhhhCCCchhHHHHHHHH
Q 036120 513 PPLVFSALRLVRQLQNQDGDVAGEEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQA 592 (779)
Q Consensus 513 P~Li~~~l~L~~~~~~~~~~~~~~~~~~~~k~if~fv~~~i~~L~~~~~~~lalkL~Lq~A~~Ad~~~~~~iaYeFf~qA 592 (779)
|.-....+.++...... .....-..+..+.+.. ...++......+..-|.+-...|--+-|.+.|.+|
T Consensus 45 ~~~~~~l~~~g~~~~~~----------g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (411)
T 4a1s_A 45 SSMCLELALEGERLCNA----------GDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD 112 (411)
T ss_dssp HHHHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHh----------CcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_pred HHhhhccccCcHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCCCCCcc---
Q 036120 593 FMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQDGIKD--- 669 (779)
Q Consensus 593 f~iyEe~isdS~~Q~~al~~ii~tL~~~~~~~~e~y~~L~tk~t~~askLLKK~dQcrav~~cshLfw~~~~~~~~d--- 669 (779)
+.+++ .+.+......++..+...+..... .+.-.....++...+.+.-..++.+.+...-+.+++ ...+
T Consensus 113 l~~~~-~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~ 184 (411)
T 4a1s_A 113 LTLAK-SMNDRLGEAKSSGNLGNTLKVMGR--FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH-----AKGKHLG 184 (411)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----HHHHHHH
T ss_pred HHHHH-HccCchHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH-----HcCcccc
Q ss_pred --------------hhhHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhhhhhhhccCCCcccHHHHHHHHHHHH
Q 036120 670 --------------GERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELIT 735 (779)
Q Consensus 670 --------------~krVleCLqkslkiAd~~~d~~~~~~~~~~~~~LfveILn~~lyf~~~~~~~it~~~in~LI~lI~ 735 (779)
-++.+++++++++++.. ....-..-.-..+....|+..|...-..++....+++..
T Consensus 185 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 185 QRNPGKFGDDVKEALTRAVEFYQENLKLMRD----------LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q ss_pred hh
Q 036120 736 SE 737 (779)
Q Consensus 736 ~~ 737 (779)
..
T Consensus 255 ~~ 256 (411)
T 4a1s_A 255 EF 256 (411)
T ss_dssp HH
T ss_pred hc
No 16
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=26.98 E-value=5.1e+02 Score=26.30 Aligned_cols=196 Identities=11% Similarity=0.028 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhccCCccccccccHHH--HHHHHHHHHhhhccCCCCCC--CCCCChhH
Q 036120 469 EEQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLV--FSALRLVRQLQNQDGDVAGE--EEPATPKK 544 (779)
Q Consensus 469 ~eQ~~var~vhli~~~d~~~~~~il~~~r~~~~~gg~~ri~~t~P~Li--~~~l~L~~~~~~~~~~~~~~--~~~~~~k~ 544 (779)
+...++-...+.|...|.+.-.+++..+.+.+..... -+.+. +..+.. |.--..+...... +.......
T Consensus 11 ~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~------~~~~~~yy~l~~~-r~~~~~~~~~~~~~~~~~~~~~~ 83 (378)
T 3q15_A 11 RVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEE------DQDLLIYYSLMCF-RHQLMLDYLEPGKTYGNRPTVTE 83 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCC------CHHHHHHHHHHHH-HHHHHHHTCCC--------CHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHH-HHHHHHhhcCcccccccccchHH
Confidence 5567777888888889999999999998888877542 11121 111111 1100001100000 00011123
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhhhCCCchhHHHHHHHHHHhhhccccCcHHHHHHHHHHHHHHHhhcCCC
Q 036120 545 IFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFG 624 (779)
Q Consensus 545 if~fv~~~i~~L~~~~~~~lalkL~Lq~A~~Ad~~~~~~iaYeFf~qAf~iyEe~isdS~~Q~~al~~ii~tL~~~~~~~ 624 (779)
.++- |........+.+....+..-|......|--+-|-++|.+|..+.++ +.|......+...+.........
T Consensus 84 ~l~~----i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~y~~~~~-- 156 (378)
T 3q15_A 84 LLET----IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPF-VSDDIEKAEFHFKVAEAYYHMKQ-- 156 (378)
T ss_dssp HHHH----HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHH----HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHcCC--
Confidence 3332 2222111123555666677777777788888888999999999884 56666666666665555444432
Q ss_pred ccchHHHHHHHHHHHHhccCc-----hhhHHHHHHhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q 036120 625 IENRDTLTHKATGYSARLLKK-----PDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAA 687 (779)
Q Consensus 625 ~e~y~~L~tk~t~~askLLKK-----~dQcrav~~cshLfw~~~~~~~~d~krVleCLqkslkiAd~~ 687 (779)
| ..+......|-.+.++ +..+.+...-+..+... .+-...++++++|++++...
T Consensus 157 ---~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~-----~~~~~A~~~~~~al~~~~~~ 215 (378)
T 3q15_A 157 ---T-HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF-----KHYDKALPHLEAALELAMDI 215 (378)
T ss_dssp ---H-HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHT
T ss_pred ---c-HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHc
Confidence 2 2233333444444433 23444444444445432 46788999999999998653
No 17
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.27 E-value=4.3e+02 Score=28.39 Aligned_cols=130 Identities=13% Similarity=0.045 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHHHHhcc-----CCccccccccHHHHHHHHHHHHhhhccCCCCCCCCCCChhHHHHHHHHHHHHhh
Q 036120 483 NDDSEEMLKIICTVRKHIMTG-----GPKRLPFTVPPLVFSALRLVRQLQNQDGDVAGEEEPATPKKIFQLLNQTIETLL 557 (779)
Q Consensus 483 ~~d~~~~~~il~~~r~~~~~g-----g~~ri~~t~P~Li~~~l~L~~~~~~~~~~~~~~~~~~~~k~if~fv~~~i~~L~ 557 (779)
+.|++.-.++|..+...+.+. .....+-..-+.+..-+..++.+-.. ++. ..++++..-+...+....
T Consensus 89 ~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~-~d~------~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 89 SKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLK-NDL------VKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp TTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHH-SCH------HHHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhc-CCH------HHHHHHHHHHHHhhhccC
Confidence 567888888887776554321 11223334445666556655544322 110 123455555555555443
Q ss_pred CCCChHHHHHHHHHHHHHhhhCCCchhHHHHHHHHHHhhh--ccccCcHHHHHHHHHHHHHHHhh
Q 036120 558 YVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYE--EEIADSKAQVTAIHLIIGTLQRI 620 (779)
Q Consensus 558 ~~~~~~lalkL~Lq~A~~Ad~~~~~~iaYeFf~qAf~iyE--e~isdS~~Q~~al~~ii~tL~~~ 620 (779)
+ ..+....++|..++.....-+-..-+|..+-+++..|. ++++.+..|..+...++.+|..-
T Consensus 162 ~-~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~ 225 (393)
T 4b4t_O 162 S-IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGD 225 (393)
T ss_dssp C-SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCC
T ss_pred C-ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCC
Confidence 3 35678899999999988877777777777888888887 45556666666777777777654
No 18
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=24.19 E-value=4.7e+02 Score=24.85 Aligned_cols=157 Identities=15% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhCCCchhHHHHHHHHHHhhhccccCcHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHhc--c
Q 036120 566 LRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARL--L 643 (779)
Q Consensus 566 lkL~Lq~A~~Ad~~~~~~iaYeFf~qAf~iyEe~isdS~~Q~~al~~ii~tL~~~~~~~~e~y~~L~tk~t~~askL--L 643 (779)
...+..-|.+.-..|--+-|.++|.+|+.+++..-..............|.+..... ..+.-.....++...+.+. -
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN-KYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHhCC
Q ss_pred CchhhHHHHHHhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhhhhhhhccCCCccc
Q 036120 644 KKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQIT 723 (779)
Q Consensus 644 KK~dQcrav~~cshLfw~~~~~~~~d~krVleCLqkslkiAd~~~d~~~~~~~~~~~~~LfveILn~~lyf~~~~~~~it 723 (779)
..++...+...-+.+++ ...+-....++++++++++.... +...-....-..+....|+..|...-.
T Consensus 106 ~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~la~~~~~~~~~~~A 172 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYG-----KRGKYKEAEPLCKRALEIREKVL--------GKDHPDVAKQLNNLALLCQNQGKYEEV 172 (311)
T ss_dssp TCHHHHHHHHHHHHHHH-----TTTCHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred CChHHHHHHHHHHHHHH-----HcCcHHHHHHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHHHHcCCHHHH
Q ss_pred HHHHHHHHHHHHh
Q 036120 724 ASAIQSLIELITS 736 (779)
Q Consensus 724 ~~~in~LI~lI~~ 736 (779)
.+++...+++.+.
T Consensus 173 ~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 173 EYYYQRALEIYQT 185 (311)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 19
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=21.78 E-value=4.2e+02 Score=23.49 Aligned_cols=154 Identities=12% Similarity=-0.025 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhhhCCCchhHHHHHHHHHHhhhccccCcHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHhcc
Q 036120 564 MALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLL 643 (779)
Q Consensus 564 lalkL~Lq~A~~Ad~~~~~~iaYeFf~qAf~iyEe~isdS~~Q~~al~~ii~tL~~~~~~~~e~y~~L~tk~t~~askLL 643 (779)
.....+..-|.+.-..|--+-|-++|.+|+.+++ ...+......++..+.........+ +.-.....++...+.+.=
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~ 100 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQ-KSGDHTAEHRALHQVGMVERMAGNW--DAARRCFLEERELLASLP 100 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHcC
Confidence 3445556666666667777778888999999988 4456666666666554444443322 122222333333332222
Q ss_pred Cch-hhHHHHHHhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhhhhhhhccCCCcc
Q 036120 644 KKP-DQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQI 722 (779)
Q Consensus 644 KK~-dQcrav~~cshLfw~~~~~~~~d~krVleCLqkslkiAd~~~d~~~~~~~~~~~~~LfveILn~~lyf~~~~~~~i 722 (779)
..+ ..+.+...-+.+++.. .+.....+++++|++++...-+ ....-.-..+....|+..|...-
T Consensus 101 ~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~ 165 (203)
T 3gw4_A 101 EDPLAASANAYEVATVALHF-----GDLAGARQEYEKSLVYAQQADD----------QVAIACAFRGLGDLAQQEKNLLE 165 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHhccc----------hHHHHHHHHHHHHHHHHCcCHHH
Confidence 123 4566666666666643 3678899999999999765322 11111112344455556666544
Q ss_pred cHHHHHHHHHHHH
Q 036120 723 TASAIQSLIELIT 735 (779)
Q Consensus 723 t~~~in~LI~lI~ 735 (779)
-.++....+++.+
T Consensus 166 A~~~~~~al~~~~ 178 (203)
T 3gw4_A 166 AQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 20
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=21.34 E-value=6.1e+02 Score=25.13 Aligned_cols=114 Identities=12% Similarity=0.026 Sum_probs=70.7
Q ss_pred CChHHHHHHHHHHHHHhhhCCCchhHHHHHHHHHHhhhccccCcHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHH
Q 036120 560 PSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYS 639 (779)
Q Consensus 560 ~~~~lalkL~Lq~A~~Ad~~~~~~iaYeFf~qAf~iyEe~isdS~~Q~~al~~ii~tL~~~~~~~~e~y~~L~tk~t~~a 639 (779)
...+.+..+|-+++.+-...|--+-|-+.|.+|..+++. ..+......++..+.........+.+ +..+-..|
T Consensus 30 ~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~~~~~g~~~~------A~~~~~~A 102 (307)
T 2ifu_A 30 PDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHAN-NRSLFHAAKAFEQAGMMLKDLQRMPE------AVQYIEKA 102 (307)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCGGG------GHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHH
Confidence 356788888888888887888878888889999998874 45555555666665544444433221 11111222
Q ss_pred Hhcc---Cch-hhHHHHHHhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 036120 640 ARLL---KKP-DQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANA 686 (779)
Q Consensus 640 skLL---KK~-dQcrav~~cshLfw~~~~~~~~d~krVleCLqkslkiAd~ 686 (779)
.++. ..+ ....+...-+.++.. .+...-++++++|+++...
T Consensus 103 l~l~~~~g~~~~~a~~~~~lg~~~~~------g~~~~A~~~~~~Al~~~~~ 147 (307)
T 2ifu_A 103 SVMYVENGTPDTAAMALDRAGKLMEP------LDLSKAVHLYQQAAAVFEN 147 (307)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHh
Confidence 2222 222 234444455555543 4788899999999998754
Done!