Query 036120
Match_columns 779
No_of_seqs 120 out of 196
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 16:19:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036120.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036120hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qqea_ a.118.8.1 (A:) Vesicul 39.4 1.4E+02 0.01 27.3 15.6 113 563-686 34-150 (290)
2 d1w53a_ a.186.1.2 (A:) Phospho 32.8 54 0.0039 26.4 6.9 55 319-379 25-79 (84)
3 d2o02a1 a.118.7.1 (A:1-230) ze 13.7 2E+02 0.014 26.7 7.7 55 670-738 142-196 (230)
4 d1t3wa_ a.236.1.1 (A:) DNA pri 12.8 40 0.0029 28.6 2.0 86 122-216 34-129 (134)
5 d1pfva1 a.27.1.1 (A:389-550) M 11.8 2E+02 0.014 24.6 6.6 61 295-355 1-63 (162)
6 d1ldda_ a.4.5.34 (A:) Anaphase 11.7 1.2E+02 0.0087 23.7 4.4 30 322-351 6-35 (74)
7 d2daha1 a.5.2.1 (A:8-48) Ubiqu 11.1 54 0.0039 22.9 1.8 16 167-182 26-41 (41)
8 d1o9da_ a.118.7.1 (A:) 14-3-3- 10.8 1.3E+02 0.0098 28.1 5.4 42 670-719 147-188 (236)
9 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 10.0 50 0.0037 24.1 1.4 16 168-183 33-48 (50)
10 d1c1ka_ a.120.1.1 (A:) gene 59 9.7 72 0.0053 29.9 2.9 21 172-192 68-88 (217)
No 1
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.40 E-value=1.4e+02 Score=27.35 Aligned_cols=113 Identities=10% Similarity=0.005 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhhhCCCchhHHHHHHHHHHhhhccccCcHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHhc
Q 036120 563 EMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARL 642 (779)
Q Consensus 563 ~lalkL~Lq~A~~Ad~~~~~~iaYeFf~qAf~iyEe~isdS~~Q~~al~~ii~tL~~~~~~~~e~y~~L~tk~t~~askL 642 (779)
+.|..+|.++|.+=-..+--+-|-+.|.+|..+++. ..+...-..++.-+.....+... |+. +..+...|.++
T Consensus 34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~-~~~~~~~a~~~~~~g~~y~~~~~-----~~~-A~~~~~~a~~~ 106 (290)
T d1qqea_ 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKK-AGNEDEAGNTYVEAYKCFKSGGN-----SVN-AVDSLENAIQI 106 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTC-----HHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhCC-----cHH-HHHHHHHhhHH
Confidence 778999999998877777667777899999999985 33433333444444333333322 221 23333344444
Q ss_pred cCch----hhHHHHHHhhhhcCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 036120 643 LKKP----DQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANA 686 (779)
Q Consensus 643 LKK~----dQcrav~~cshLfw~~~~~~~~d~krVleCLqkslkiAd~ 686 (779)
..+. .++.+...-+.++-. ...|.++.++++++|+++...
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~A~~l~~~ 150 (290)
T d1qqea_ 107 FTHRGQFRRGANFKFELGEILEN----DLHDYAKAIDCYELAGEWYAQ 150 (290)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHhHhh----HHHHHHHHHHHHHHHHHHHHh
Confidence 3333 334444444444422 234789999999999998654
No 2
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=32.76 E-value=54 Score=26.43 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHhhHHhcCCcchhHHHHHHHHHHHhcc
Q 036120 319 VEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDRLDYVDQVLGACVKKLSS 379 (779)
Q Consensus 319 ~~lF~~F~~~i~~l~~~~~~l~~~~~~~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~ 379 (779)
..++ ...++-.++++. +++++|++.+..+.++ ..+|+..+.|-.-|.+..+.+..
T Consensus 25 ~~Ly-~~~~fsre~iek--~IsPEeIV~iHk~~l~---el~~~~~e~v~~Sfd~LlEVm~g 79 (84)
T d1w53a_ 25 TSLY-QAQKFSRKTIEH--QIPPEEIISIHRKVLK---ELYPSLPEDVFHSLDFLIEVMIG 79 (84)
T ss_dssp HHHH-HHHHHHHHHHHT--TCCHHHHHHHHHHHHH---HHCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHc--CCCHHHHHHHHHHHHH---HHCCCChHHHHHHHHHHHHHHHH
Confidence 3455 788888888986 8999999999999887 67888777777777776666543
No 3
>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.69 E-value=2e+02 Score=26.69 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhhhhhhhccCCCcccHHHHHHHHHHHHhhh
Q 036120 670 GERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEM 738 (779)
Q Consensus 670 ~krVleCLqkslkiAd~~~d~~~~~~~~~~~~~LfveILn~~lyf~~~~~~~it~~~in~LI~lI~~~l 738 (779)
.++..+++|+|+.+|.+.+. |...+.|= =+||..++||+.-+. ..+-+++.++-+
T Consensus 142 ~~~a~~aY~~A~~~A~~~L~-------~t~pirLg-L~LN~SVF~YEi~~~------~~~A~~lak~af 196 (230)
T d2o02a1 142 VDQSQQAYQEAFEISKKEMQ-------PTHPIRLG-LALNFSVFYYEILNS------PEKACSLAKTAF 196 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-------TTCHHHHH-HHHHHHHHHHHTSCC------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC-------CCchHHHH-HHHhHHHHHHHHcCC------HHHHHHHHHHHH
Confidence 45789999999999999875 65555553 369999999986443 234455555444
No 4
>d1t3wa_ a.236.1.1 (A:) DNA primase DnaG, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.84 E-value=40 Score=28.59 Aligned_cols=86 Identities=22% Similarity=0.325 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHhhcccchhHHHHHHHH--------HHHhccccCCCCCCccccCCcChhhhHHHHHHhH--HHHHHHHH
Q 036120 122 PAKEVLKDLVEMCRGVQHPIRGLFLRSY--------LAQVSRDKLPDIGSEYERDAETVMDAVEFVLQNF--TEMNKLWV 191 (779)
Q Consensus 122 p~~eILkDLvEMcRGVQhPiRGLFLR~Y--------L~q~~k~~LPd~~s~~e~~~g~~~dsi~Fll~NF--~EMNKLWV 191 (779)
|--++|..|++.||.--+..-|-.|=+| |.+....-++.. + ++....+.|++..+...+ .+++.|=-
T Consensus 34 ~~~~lL~~L~~~~~~~p~~~t~~Lle~~r~t~~~~~L~~La~~e~~~~--~-~~~~~ef~d~l~~l~~~~~~~~~~~L~~ 110 (134)
T d1t3wa_ 34 PGLGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSMWDDIAD--K-NIAEQTFTDSLNHMFDSLLELRQEELIA 110 (134)
T ss_dssp TTHHHHHHHHHHHHTSTTCCHHHHHHTTCSGGGHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhCCCCCHHHHHHHHcCChHHHHHHHHHhccccCC--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3346677777777753333333333333 333332211111 0 112245888888887776 35666766
Q ss_pred HHhhcCCCchhHhHHHHHHHHHHHh
Q 036120 192 RMQHQGPGRVREKREKERNELRDLV 216 (779)
Q Consensus 192 RlQhqG~~rere~R~~ER~eL~iLV 216 (779)
|..+.|-+ ..||+||+-|+
T Consensus 111 k~~~~~Lt------~eEk~eL~~L~ 129 (134)
T d1t3wa_ 111 RERTHGLS------NEERLELWTLN 129 (134)
T ss_dssp HHTTTCCC------HHHHHHHHHHH
T ss_pred hhccCCCC------HHHHHHHHHHH
Confidence 66544433 46667776554
No 5
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}
Probab=11.78 E-value=2e+02 Score=24.65 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhhhhccCC-Ccc-hhchHHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHhh
Q 036120 295 LSRLMDRLSNYAVSSADV-LPE-FLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFT 355 (779)
Q Consensus 295 l~~Li~RL~~y~~~~~~~-~~~-~~~~~lF~~F~~~i~~l~~~~~~l~~~~~~~l~~sll~l~ 355 (779)
+++|+.|-.+|+.+.-++ +|+ ..+.++.+.+.....++.+.-....+.+.+...-++.+.+
T Consensus 1 ~~NL~~R~~~~i~k~~~g~vp~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~al~~i~~~~~~~ 63 (162)
T d1pfva1 1 VVNLASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLA 63 (162)
T ss_dssp CHHHHHHHHHHHHHHSTTBCCSSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHhcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 468999999988765433 343 2256677777766666655544566666666665555543
No 6
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.69 E-value=1.2e+02 Score=23.71 Aligned_cols=30 Identities=10% Similarity=-0.021 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhCCCCchhhHHHHHHHH
Q 036120 322 FAKLSNAIGKVIDAQVDMPIVGAISLYVSL 351 (779)
Q Consensus 322 F~~F~~~i~~l~~~~~~l~~~~~~~l~~sl 351 (779)
.++||.+|..|....+.+|++.+-.++.-+
T Consensus 6 lq~~w~yI~gMLtN~~slpleRIh~mLkmf 35 (74)
T d1ldda_ 6 LQRSLPFIEGMLTNLGAMKLHKIHSFLKIT 35 (74)
T ss_dssp HHHHHHHHHHHHHHHCSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 578999999999988999999998887655
No 7
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.07 E-value=54 Score=22.94 Aligned_cols=16 Identities=31% Similarity=0.179 Sum_probs=13.9
Q ss_pred cCCcChhhhHHHHHHh
Q 036120 167 RDAETVMDAVEFVLQN 182 (779)
Q Consensus 167 ~~~g~~~dsi~Fll~N 182 (779)
..+|||+-||++|++|
T Consensus 26 ~t~Gdv~~Aie~Ll~~ 41 (41)
T d2daha1 26 ATGGDVDAAVEKLRQS 41 (41)
T ss_dssp HHTSCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHhC
Confidence 3679999999999875
No 8
>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=10.84 E-value=1.3e+02 Score=28.08 Aligned_cols=42 Identities=29% Similarity=0.326 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhhhhhhhccCC
Q 036120 670 GERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGN 719 (779)
Q Consensus 670 ~krVleCLqkslkiAd~~~d~~~~~~~~~~~~~LfveILn~~lyf~~~~~ 719 (779)
.++..+++|+|..+|.+.+. +...+.|= =+||..++||+.-+
T Consensus 147 ~~~a~~aY~~A~~~a~~~l~-------pt~PirLg-LaLN~SVF~yEi~~ 188 (236)
T d1o9da_ 147 AESTLTAYKAAQDIATTELA-------PTHPIRLG-LALNFSVFYYEILN 188 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-------TTCHHHHH-HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhcCC-------CCcHHHHH-HHHhHHHHHHHHcC
Confidence 46779999999999999886 66665553 36899999998644
No 9
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.04 E-value=50 Score=24.13 Aligned_cols=16 Identities=6% Similarity=-0.120 Sum_probs=14.1
Q ss_pred CCcChhhhHHHHHHhH
Q 036120 168 DAETVMDAVEFVLQNF 183 (779)
Q Consensus 168 ~~g~~~dsi~Fll~NF 183 (779)
.+|||+-||++|++|.
T Consensus 33 t~GdV~~Aie~Ll~~~ 48 (50)
T d2dnaa1 33 TDGDTNAAIYKLKSSQ 48 (50)
T ss_dssp TTSCHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHhcC
Confidence 5799999999999874
No 10
>d1c1ka_ a.120.1.1 (A:) gene 59 helicase assembly protein {Bacteriophage T4 [TaxId: 10665]}
Probab=9.73 E-value=72 Score=29.88 Aligned_cols=21 Identities=10% Similarity=0.370 Sum_probs=17.9
Q ss_pred hhhhHHHHHHhHHHHHHHHHH
Q 036120 172 VMDAVEFVLQNFTEMNKLWVR 192 (779)
Q Consensus 172 ~~dsi~Fll~NF~EMNKLWVR 192 (779)
-.|-++|.+.||+.-++.||.
T Consensus 68 ~~ei~dffvaNFi~~~~~WIg 88 (217)
T d1c1ka_ 68 LKELALIFISNLVANQDAWIG 88 (217)
T ss_dssp HHHHHHHHHHHHHHCHHHHSS
T ss_pred hhhHHHHHHHHhhcCCCChhH
Confidence 356788999999999999964
Done!