BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036124
(429 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KJ1|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 111 ERNKPVWVANRNNPILDKSGSLTIDSTDGNLKILHNGGNPIVIT-SVKADGNTSASLLKT 169
+ + VW +N IL K G + +DGN + G + + SV+ +GN L +
Sbjct: 35 DHSTSVWASN--TGILGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQED 92
Query: 170 GNLVLY 175
GN+V+Y
Sbjct: 93 GNVVIY 98
>pdb|1BWU|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 111 ERNKPVWVANRNNPILDKSGSLTIDSTDGNLKILHNGGNPIVIT-SVKADGNTSASLLKT 169
+ + VW +N IL K G + +DGN + G + + SV+ +GN L +
Sbjct: 35 DHSTSVWASN--TGILGKKGCRAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQED 92
Query: 170 GNLVLYE 176
GN+V+Y
Sbjct: 93 GNVVIYR 99
>pdb|1BWU|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 111 ERNKPVWVANRNNPILDKSGSLTIDSTDGNLKILHNGGNPIVIT-SVKADGNTSASLLKT 169
+ + VW +N IL K G + DGN + G + + SV+ +GN L +
Sbjct: 35 DHSTSVWASNT--GILGKKGCKAVLQADGNFVVYDAEGRSLWASHSVRGNGNYVLVLQED 92
Query: 170 GNLVLY 175
GN+V+Y
Sbjct: 93 GNVVIY 98
>pdb|3DB7|A Chain A, Crystal Structure Of A Putative Calcium-Regulated
Periplasmic Protein (Bt0923) From Bacteroides
Thetaiotaomicron At 1.40 A Resolution
Length = 127
Score = 28.5 bits (62), Expect = 6.8, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 311 YADGIVKSPSCSKDFSYIEYKYGFMNGDGFKFKESDNMTLSDCK 354
++D V DF Y Y+ F NG+ +F + N DCK
Sbjct: 25 FSDSKVALAKXESDFLYKSYEVIFTNGNKVEFDKKGNWEEVDCK 68
>pdb|1BWU|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 111 ERNKPVWVANRNNPILDKSGSLTIDSTDGNLKILHNGGNPIVIT-SVKADGNTSASLLKT 169
+ + VW +N + P K G + +DGN + G + + SV+ +GN L +
Sbjct: 35 DHSTAVWSSNTDIP--GKKGCKAVLQSDGNFVVYDAEGASLWASHSVRGNGNYVLVLQED 92
Query: 170 GNLVLYEMNSDGSERRELWQSFDY 193
GN+V+Y R ++W + Y
Sbjct: 93 GNVVIY--------RSDIWSTNTY 108
>pdb|1KJ1|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 111 ERNKPVWVANRNNPILDKSGSLTIDSTDGNLKILHNGGNPIVIT-SVKADGNTSASLLKT 169
+ + VW N + P K G + +DGN + G + + SV+ +GN L +
Sbjct: 35 DHSTAVWTTNTDIP--GKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQED 92
Query: 170 GNLVLY 175
GN+V+Y
Sbjct: 93 GNVVIY 98
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 28.1 bits (61), Expect = 9.6, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 132 LTIDSTDGNLKILHNGGNPIVITSVKADGNTSASLLKTGNLVL 174
+ I D + +G NP+ + SVK DG + ++TG+ ++
Sbjct: 11 VIIQKDDNGFGLTVSGDNPVFVQSVKEDGAAMRAGVQTGDRII 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,237,947
Number of Sequences: 62578
Number of extensions: 641244
Number of successful extensions: 1532
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1527
Number of HSP's gapped (non-prelim): 32
length of query: 429
length of database: 14,973,337
effective HSP length: 102
effective length of query: 327
effective length of database: 8,590,381
effective search space: 2809054587
effective search space used: 2809054587
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)