Query 036124
Match_columns 429
No_of_seqs 205 out of 1570
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 09:40:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036124.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036124hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 99.9 1.8E-28 3.8E-33 211.9 3.4 109 112-226 1-114 (114)
2 cd00028 B_lectin Bulb-type man 99.9 3E-24 6.5E-29 185.4 14.7 114 62-194 2-116 (116)
3 smart00108 B_lectin Bulb-type 99.9 6.1E-23 1.3E-27 176.6 14.2 112 62-193 2-114 (114)
4 PF08276 PAN_2: PAN-like domai 99.6 3.7E-16 8E-21 122.4 5.3 56 332-387 5-66 (66)
5 cd00129 PAN_APPLE PAN/APPLE-li 99.6 3.5E-15 7.5E-20 121.4 5.6 67 332-400 9-79 (80)
6 cd01098 PAN_AP_plant Plant PAN 99.4 3.8E-13 8.3E-18 108.2 6.5 69 332-402 12-84 (84)
7 PF00954 S_locus_glycop: S-loc 99.3 2.2E-12 4.8E-17 110.5 7.1 76 252-328 1-109 (110)
8 smart00473 PAN_AP divergent su 98.7 6.5E-08 1.4E-12 75.9 7.3 67 332-400 4-77 (78)
9 smart00108 B_lectin Bulb-type 98.5 6.5E-07 1.4E-11 76.9 8.5 85 131-254 23-111 (114)
10 cd00028 B_lectin Bulb-type man 98.4 1.4E-06 3E-11 75.1 8.0 85 132-255 24-113 (116)
11 PF01453 B_lectin: D-mannose b 98.1 3.5E-05 7.7E-10 66.6 11.0 100 68-195 12-114 (114)
12 cd01100 APPLE_Factor_XI_like S 97.5 0.00012 2.6E-09 58.1 4.4 45 337-383 9-58 (73)
13 PF00024 PAN_1: PAN domain Thi 92.2 0.14 3.1E-06 39.7 3.2 51 334-386 4-60 (79)
14 smart00223 APPLE APPLE domain. 89.4 0.55 1.2E-05 38.1 4.2 45 338-382 7-57 (79)
15 smart00605 CW CW domain. 87.3 2.1 4.5E-05 35.4 6.4 54 347-403 21-76 (94)
16 PF08277 PAN_3: PAN-like domai 87.0 1.8 3.9E-05 33.5 5.5 50 347-400 19-70 (71)
17 PF14295 PAN_4: PAN domain; PD 82.6 0.97 2.1E-05 32.3 2.1 23 347-369 15-37 (51)
18 cd01099 PAN_AP_HGF Subfamily o 70.3 11 0.00024 30.2 5.2 36 347-384 24-61 (80)
19 KOG4649 PQQ (pyrrolo-quinoline 50.7 45 0.00098 33.5 6.5 42 112-154 168-214 (354)
20 PRK11138 outer membrane biogen 41.5 4E+02 0.0088 27.2 18.3 74 112-189 139-230 (394)
21 PRK11138 outer membrane biogen 35.9 1.3E+02 0.0029 30.8 7.7 56 131-190 122-186 (394)
22 PF01436 NHL: NHL repeat; Int 35.1 63 0.0014 20.6 3.3 20 132-152 7-26 (28)
23 PF06006 DUF905: Bacterial pro 35.1 51 0.0011 26.3 3.3 23 132-154 23-48 (70)
24 TIGR03300 assembly_YfgL outer 34.1 1.6E+02 0.0035 29.7 7.9 78 107-189 34-130 (377)
25 KOG0640 mRNA cleavage stimulat 33.4 3.2E+02 0.0069 28.3 9.4 72 115-190 250-334 (430)
26 PF13360 PQQ_2: PQQ-like domai 33.3 3.1E+02 0.0068 25.1 9.2 74 112-190 55-148 (238)
27 PF13360 PQQ_2: PQQ-like domai 32.8 85 0.0018 28.9 5.2 48 139-190 3-62 (238)
28 cd05845 Ig2_L1-CAM_like Second 27.2 92 0.002 26.0 3.9 32 112-145 33-64 (95)
29 smart00765 MANEC The MANEC dom 25.7 1.5E+02 0.0033 24.8 4.9 34 347-380 37-72 (93)
30 smart00564 PQQ beta-propeller 24.8 1.2E+02 0.0026 19.1 3.4 15 139-153 16-31 (33)
31 KOG0315 G-protein beta subunit 21.2 5.9E+02 0.013 25.7 8.6 93 110-205 102-212 (311)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.94 E-value=1.8e-28 Score=211.88 Aligned_cols=109 Identities=43% Similarity=0.687 Sum_probs=78.9
Q ss_pred CCccEEEeCCCCCCCC--CCeEEEEEcCCCcEEEEeCCCCcEEEe-eecCC--CceEEEEeeCCCEEEEeccCCCcccce
Q 036124 112 RNKPVWVANRNNPILD--KSGSLTIDSTDGNLKILHNGGNPIVIT-SVKAD--GNTSASLLKTGNLVLYEMNSDGSERRE 186 (429)
Q Consensus 112 ~~tvVWvANr~~pv~~--~~~~L~l~~d~GnLvl~d~~g~~vWst-~~~~~--~~~~a~LlD~GNLVL~d~~~~~~~~~~ 186 (429)
++||||+|||+.|+.. ...+|.|+.| |||||+|..+.+||++ .+... .+..|+|+|+|||||++.. + .+
T Consensus 1 ~~tvvW~an~~~p~~~~s~~~~L~l~~d-GnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~-~----~~ 74 (114)
T PF01453_consen 1 PRTVVWVANRNSPLTSSSGNYTLILQSD-GNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSS-G----NV 74 (114)
T ss_dssp ---------TTEEEEECETTEEEEEETT-SEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEETT-S----EE
T ss_pred CcccccccccccccccccccccceECCC-CeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEeec-c----eE
Confidence 3689999999999953 2478999999 9999999998899999 43322 4789999999999999963 2 79
Q ss_pred eeeeccCCccccCCCCeeecccCCCceeEEEEeccCCCCC
Q 036124 187 LWQSFDYPTDTLLPGMKLGINLQTGHQWFLQSWISDFSPA 226 (429)
Q Consensus 187 lWQSFd~PTDTLLPGq~L~~~~~tG~~~~LtSw~S~~dps 226 (429)
|||||||||||+||||+|+.+..+|.+..|+||++.+|||
T Consensus 75 lW~Sf~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 75 LWQSFDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp EEESTTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred EEeecCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 9999999999999999999877777666799999999996
No 2
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.92 E-value=3e-24 Score=185.38 Aligned_cols=114 Identities=40% Similarity=0.656 Sum_probs=96.1
Q ss_pred CcccCCCeEEecCCeEEEeeeCCCCCCceEEEEEEecCCCCCcccccCCCCCccEEEeCCCCCCCCCCeEEEEEcCCCcE
Q 036124 62 QHLKDGDELVSAFGYFRMGFFSPDGSENRYLGVWYYRPTDPSVFDYYNSERNKPVWVANRNNPILDKSGSLTIDSTDGNL 141 (429)
Q Consensus 62 ~~L~~~~~L~S~~g~F~lGFf~~~~~~~~ylgIwy~~~~~~~~~~~~~~~~~tvVWvANr~~pv~~~~~~L~l~~d~GnL 141 (429)
+.|..|++|+|+++.|++|||.+......+++|||.+.+ .++||+||++.|.. ..++|.|+.| |+|
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~q~~dgnlv~~~~~~------------~~~vW~snt~~~~~-~~~~l~l~~d-GnL 67 (116)
T cd00028 2 NPLSSGQTLVSSGSLFELGFFKLIMQSRDYNLILYKGSS------------RTVVWVANRDNPSG-SSCTLTLQSD-GNL 67 (116)
T ss_pred cCcCCCCEEEeCCCcEEEecccCCCCCCeEEEEEEeCCC------------CeEEEECCCCCCCC-CCEEEEEecC-CCe
Confidence 468889999999999999999986432388999997542 57899999999843 4578999999 999
Q ss_pred EEEeCCCCcEEEe-eecCCCceEEEEeeCCCEEEEeccCCCcccceeeeeccCC
Q 036124 142 KILHNGGNPIVIT-SVKADGNTSASLLKTGNLVLYEMNSDGSERRELWQSFDYP 194 (429)
Q Consensus 142 vl~d~~g~~vWst-~~~~~~~~~a~LlD~GNLVL~d~~~~~~~~~~lWQSFd~P 194 (429)
+|+|.+|.+||++ +.......+|+|+|+|||||++.+ + .+||||||||
T Consensus 68 vl~~~~g~~vW~S~~~~~~~~~~~~L~ddGnlvl~~~~-~----~~~W~Sf~~P 116 (116)
T cd00028 68 VIYDGSGTVVWSSNTTRVNGNYVLVLLDDGNLVLYDSD-G----NFLWQSFDYP 116 (116)
T ss_pred EEEcCCCcEEEEecccCCCCceEEEEeCCCCEEEECCC-C----CEEEcCCCCC
Confidence 9999999999999 543245678999999999999975 2 6999999999
No 3
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.90 E-value=6.1e-23 Score=176.58 Aligned_cols=112 Identities=40% Similarity=0.684 Sum_probs=95.1
Q ss_pred CcccCCCeEEecCCeEEEeeeCCCCCCceEEEEEEecCCCCCcccccCCCCCccEEEeCCCCCCCCCCeEEEEEcCCCcE
Q 036124 62 QHLKDGDELVSAFGYFRMGFFSPDGSENRYLGVWYYRPTDPSVFDYYNSERNKPVWVANRNNPILDKSGSLTIDSTDGNL 141 (429)
Q Consensus 62 ~~L~~~~~L~S~~g~F~lGFf~~~~~~~~ylgIwy~~~~~~~~~~~~~~~~~tvVWvANr~~pv~~~~~~L~l~~d~GnL 141 (429)
+.|..|+.|+|+++.|++|||.... ...+++|||... ..++||+||++.|+... +.|.|++| |+|
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~-q~dgnlV~~~~~------------~~~~vW~snt~~~~~~~-~~l~l~~d-GnL 66 (114)
T smart00108 2 NTLSSGQTLVSGNSLFELGFFTLIM-QNDYNLILYKSS------------SRTVVWVANRDNPVSDS-CTLTLQSD-GNL 66 (114)
T ss_pred cccCCCCEEecCCCcEeeeccccCC-CCCEEEEEEECC------------CCcEEEECCCCCCCCCC-EEEEEeCC-CCE
Confidence 4678899999999999999998764 367889999753 25789999999998653 78999998 999
Q ss_pred EEEeCCCCcEEEe-eecCCCceEEEEeeCCCEEEEeccCCCcccceeeeeccC
Q 036124 142 KILHNGGNPIVIT-SVKADGNTSASLLKTGNLVLYEMNSDGSERRELWQSFDY 193 (429)
Q Consensus 142 vl~d~~g~~vWst-~~~~~~~~~a~LlD~GNLVL~d~~~~~~~~~~lWQSFd~ 193 (429)
+|+|.+|.+||++ +........++|+|+|||||++..+ ++|||||||
T Consensus 67 vl~~~~g~~vW~S~t~~~~~~~~~~L~ddGnlvl~~~~~-----~~~W~Sf~~ 114 (114)
T smart00108 67 VLYDGDGRVVWSSNTTGANGNYVLVLLDDGNLVIYDSDG-----NFLWQSFDY 114 (114)
T ss_pred EEEeCCCCEEEEecccCCCCceEEEEeCCCCEEEECCCC-----CEEeCCCCC
Confidence 9999999999999 5433456789999999999998743 699999997
No 4
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=99.62 E-value=3.7e-16 Score=122.36 Aligned_cols=56 Identities=34% Similarity=0.704 Sum_probs=49.3
Q ss_pred CCeEEecccccCCCC------CCChhhhHHhcccCCceEEEEeecCCCCCceEEecCCCccc
Q 036124 332 YGFMNGDGFKFKESD------NMTLSDCKVKCFQNCSCVAYASINESNDTGCEIWSSGTKFT 387 (429)
Q Consensus 332 d~F~~l~~v~lpd~~------~~s~~~C~~~CL~nCSC~Ayay~~~~~g~gC~lW~~~L~n~ 387 (429)
|+|++|++|++|+++ +.++++|+++||+||||+||+|.+..++++|++|+++|+|+
T Consensus 5 d~F~~l~~~~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~Ayay~~~~~~~~C~lW~~~L~d~ 66 (66)
T PF08276_consen 5 DGFLKLPNMKLPDFDNAIVDSSVSLEECEKACLSNCSCTAYAYSNLSGGGGCLLWYGDLVDL 66 (66)
T ss_pred CEEEEECCeeCCCCcceeeecCCCHHHHHhhcCCCCCEeeEEeeccCCCCEEEEEcCEeecC
Confidence 789999999999985 57999999999999999999997411457799999999985
No 5
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.56 E-value=3.5e-15 Score=121.37 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=60.2
Q ss_pred CCeEEecccccCCCCCCChhhhHHhccc---CCceEEEEeecCCCCCceEEecCCC-ccceEecCCCceEEEE
Q 036124 332 YGFMNGDGFKFKESDNMTLSDCKVKCFQ---NCSCVAYASINESNDTGCEIWSSGT-KFTVTSITDRRIIFMA 400 (429)
Q Consensus 332 d~F~~l~~v~lpd~~~~s~~~C~~~CL~---nCSC~Ayay~~~~~g~gC~lW~~~L-~n~~~~~~~~~~lylk 400 (429)
.+|+++.+|++|++...+++||+++|++ ||||+||+|.+ .+.||++|+++| +|+++....+.+||+|
T Consensus 9 g~fl~~~~~klpd~~~~s~~eC~~~Cl~~~~nCsC~Aya~~~--~~~gC~~W~~~l~~d~~~~~~~g~~Ly~r 79 (80)
T cd00129 9 GTTLIKIALKIKTTKANTADECANRCEKNGLPFSCKAFVFAK--ARKQCLWFPFNSMSGVRKEFSHGFDLYEN 79 (80)
T ss_pred CeEEEeecccCCcccccCHHHHHHHHhcCCCCCCceeeeccC--CCCCeEEecCcchhhHHhccCCCceeEeE
Confidence 5699999999999988899999999999 99999999962 245899999999 9998877778999998
No 6
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=99.41 E-value=3.8e-13 Score=108.19 Aligned_cols=69 Identities=25% Similarity=0.585 Sum_probs=58.8
Q ss_pred CCeEEecccccCCCC----CCChhhhHHhcccCCceEEEEeecCCCCCceEEecCCCccceEecCCCceEEEEEe
Q 036124 332 YGFMNGDGFKFKESD----NMTLSDCKVKCFQNCSCVAYASINESNDTGCEIWSSGTKFTVTSITDRRIIFMARE 402 (429)
Q Consensus 332 d~F~~l~~v~lpd~~----~~s~~~C~~~CL~nCSC~Ayay~~~~~g~gC~lW~~~L~n~~~~~~~~~~lylkl~ 402 (429)
++|+.++++++|+.. ..++++|++.||+||+|+||+|.+ ++++|++|.+.+.+.+.....+.++||||+
T Consensus 12 ~~f~~~~~~~~~~~~~~~~~~s~~~C~~~Cl~nCsC~a~~~~~--~~~~C~~~~~~~~~~~~~~~~~~~~yiKv~ 84 (84)
T cd01098 12 DGFLKLPDVKLPDNASAITAISLEECREACLSNCSCTAYAYNN--GSGGCLLWNGLLNNLRSLSSGGGTLYLRLA 84 (84)
T ss_pred CEEEEeCCeeCCCchhhhccCCHHHHHHHHhcCCCcceeeecC--CCCeEEEEeceecceEeecCCCcEEEEEeC
Confidence 579999999999875 579999999999999999999962 345699999999998765555789999984
No 7
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.34 E-value=2.2e-12 Score=110.46 Aligned_cols=76 Identities=28% Similarity=0.550 Sum_probs=66.7
Q ss_pred EEeCCCCCceeeeeee--ccCceeeEEEecCCeeEEEEEecCCCceeeEEEEcccCcEEE--------------------
Q 036124 252 WTSEIWPKGWFHSYSL--VSDGYNFGYTSSEHEKYFNYSANETITSFPVLRLTANGLSGA-------------------- 309 (429)
Q Consensus 252 w~sg~w~g~~fs~~p~--~~~~~~~~f~~~~~e~~~~~~~~d~s~~~~rl~Ld~dG~lr~-------------------- 309 (429)
||+|+|+|..|+++|+ ....+.+.|+.+++|++++|.+.+.+ .++|++||++|++++
T Consensus 1 wrsG~WnG~~f~g~p~~~~~~~~~~~fv~~~~e~~~t~~~~~~s-~~~r~~ld~~G~l~~~~w~~~~~~W~~~~~~p~d~ 79 (110)
T PF00954_consen 1 WRSGPWNGQRFSGIPEMSSNSLYNYSFVSNNEEVYYTYSLSNSS-VLSRLVLDSDGQLQRYIWNESTQSWSVFWSAPKDQ 79 (110)
T ss_pred CCccccCCeEECCcccccccceeEEEEEECCCeEEEEEecCCCc-eEEEEEEeeeeEEEEEEEecCCCcEEEEEEecccC
Confidence 8999999999999999 45678889999999999999998888 899999999999998
Q ss_pred --Ee----cCC---CCCCCCCc--CCCccc
Q 036124 310 --LY----ADG---IVKSPSCS--KDFSYI 328 (429)
Q Consensus 310 --~y----~~g---~~~~p~C~--~GF~p~ 328 (429)
+| +|| .+..|.|+ +||+|+
T Consensus 80 Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~P~ 109 (110)
T PF00954_consen 80 CDVYGFCGPNGICNSNNSPKCSCLPGFEPK 109 (110)
T ss_pred CCCccccCCccEeCCCCCCceECCCCcCCC
Confidence 23 666 35678899 999996
No 8
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.67 E-value=6.5e-08 Score=75.88 Aligned_cols=67 Identities=24% Similarity=0.436 Sum_probs=53.7
Q ss_pred CCeEEecccccCCCC-----CCChhhhHHhccc-CCceEEEEeecCCCCCceEEec-CCCccceEecCCCceEEEE
Q 036124 332 YGFMNGDGFKFKESD-----NMTLSDCKVKCFQ-NCSCVAYASINESNDTGCEIWS-SGTKFTVTSITDRRIIFMA 400 (429)
Q Consensus 332 d~F~~l~~v~lpd~~-----~~s~~~C~~~CL~-nCSC~Ayay~~~~~g~gC~lW~-~~L~n~~~~~~~~~~lylk 400 (429)
..|..++++.+++.. ..++++|++.|++ +|+|.||.|.+ .+.+|.+|. +.+.+.......+.++|.|
T Consensus 4 ~~f~~~~~~~l~~~~~~~~~~~s~~~C~~~C~~~~~~C~s~~y~~--~~~~C~l~~~~~~~~~~~~~~~~~~~y~~ 77 (78)
T smart00473 4 DCFVRLPNTKLPGFSRIVISVASLEECASKCLNSNCSCRSFTYNN--GTKGCLLWSESSLGDARLFPSGGVDLYEK 77 (78)
T ss_pred ceeEEecCccCCCCcceeEcCCCHHHHHHHhCCCCCceEEEEEcC--CCCEEEEeeCCccccceecccCCceeEEe
Confidence 458889999998554 5699999999999 99999999962 345699999 8888887555566777776
No 9
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.47 E-value=6.5e-07 Score=76.88 Aligned_cols=85 Identities=24% Similarity=0.410 Sum_probs=59.7
Q ss_pred EEEEEcCCCcEEEEeCC-CCcEEEe-eecC-CCceEEEEeeCCCEEEEeccCCCcccceeeeeccCCccccCCCCeeecc
Q 036124 131 SLTIDSTDGNLKILHNG-GNPIVIT-SVKA-DGNTSASLLKTGNLVLYEMNSDGSERRELWQSFDYPTDTLLPGMKLGIN 207 (429)
Q Consensus 131 ~L~l~~d~GnLvl~d~~-g~~vWst-~~~~-~~~~~a~LlD~GNLVL~d~~~~~~~~~~lWQSFd~PTDTLLPGq~L~~~ 207 (429)
++.++.| |+||+++.. +.+||++ +... .....++|+++|||||++.++ .++|+|-..
T Consensus 23 ~~~~q~d-gnlV~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g-----~~vW~S~t~-------------- 82 (114)
T smart00108 23 TLIMQND-YNLILYKSSSRTVVWVANRDNPVSDSCTLTLQSDGNLVLYDGDG-----RVVWSSNTT-------------- 82 (114)
T ss_pred ccCCCCC-EEEEEEECCCCcEEEECCCCCCCCCCEEEEEeCCCCEEEEeCCC-----CEEEEeccc--------------
Confidence 3455678 999999865 5799999 4322 233788999999999998753 589998110
Q ss_pred cCCCceeEEEEeccCCCCCceeEEEeeCCCCCceEEEecC-CeeEEEe
Q 036124 208 LQTGHQWFLQSWISDFSPAQGSYTLGIDPNVPNQLIIWWR-GDVYWTS 254 (429)
Q Consensus 208 ~~tG~~~~LtSw~S~~dps~G~fsl~l~~~g~~~l~~~~~-~~~Yw~s 254 (429)
...|.+.+.|+++|++++ ++. ..+.|.+
T Consensus 83 -----------------~~~~~~~~~L~ddGnlvl--~~~~~~~~W~S 111 (114)
T smart00108 83 -----------------GANGNYVLVLLDDGNLVI--YDSDGNFLWQS 111 (114)
T ss_pred -----------------CCCCceEEEEeCCCCEEE--ECCCCCEEeCC
Confidence 124567889999998644 442 3577875
No 10
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.37 E-value=1.4e-06 Score=75.11 Aligned_cols=85 Identities=22% Similarity=0.364 Sum_probs=60.0
Q ss_pred EEEEc-CCCcEEEEeCC-CCcEEEe-eec-CCCceEEEEeeCCCEEEEeccCCCcccceeeeeccCCccccCCCCeeecc
Q 036124 132 LTIDS-TDGNLKILHNG-GNPIVIT-SVK-ADGNTSASLLKTGNLVLYEMNSDGSERRELWQSFDYPTDTLLPGMKLGIN 207 (429)
Q Consensus 132 L~l~~-d~GnLvl~d~~-g~~vWst-~~~-~~~~~~a~LlD~GNLVL~d~~~~~~~~~~lWQSFd~PTDTLLPGq~L~~~ 207 (429)
+.++. | |+||+++.. +.+||++ +.. ......++|+++|||||++.++ .++|+|-..
T Consensus 24 ~~~q~~d-gnlv~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g-----~~vW~S~~~-------------- 83 (116)
T cd00028 24 LIMQSRD-YNLILYKGSSRTVVWVANRDNPSGSSCTLTLQSDGNLVIYDGSG-----TVVWSSNTT-------------- 83 (116)
T ss_pred CCCCCCe-EEEEEEeCCCCeEEEECCCCCCCCCCEEEEEecCCCeEEEcCCC-----cEEEEeccc--------------
Confidence 34454 7 999999764 5799999 433 2345789999999999998753 589998211
Q ss_pred cCCCceeEEEEeccCCCCCceeEEEeeCCCCCceEEEec-CCeeEEEeC
Q 036124 208 LQTGHQWFLQSWISDFSPAQGSYTLGIDPNVPNQLIIWW-RGDVYWTSE 255 (429)
Q Consensus 208 ~~tG~~~~LtSw~S~~dps~G~fsl~l~~~g~~~l~~~~-~~~~Yw~sg 255 (429)
...+.+.+.|+++|+.++ ++ ...+.|.+.
T Consensus 84 -----------------~~~~~~~~~L~ddGnlvl--~~~~~~~~W~Sf 113 (116)
T cd00028 84 -----------------RVNGNYVLVLLDDGNLVL--YDSDGNFLWQSF 113 (116)
T ss_pred -----------------CCCCceEEEEeCCCCEEE--ECCCCCEEEcCC
Confidence 024568889999998544 43 246788764
No 11
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=98.10 E-value=3.5e-05 Score=66.58 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=66.1
Q ss_pred CeEEecCCeEEEeeeCCCCCCceEEEEEEecCCCCCcccccCCCCCccEEEe-CCCCCCCCCCeEEEEEcCCCcEEEEeC
Q 036124 68 DELVSAFGYFRMGFFSPDGSENRYLGVWYYRPTDPSVFDYYNSERNKPVWVA-NRNNPILDKSGSLTIDSTDGNLKILHN 146 (429)
Q Consensus 68 ~~L~S~~g~F~lGFf~~~~~~~~ylgIwy~~~~~~~~~~~~~~~~~tvVWvA-Nr~~pv~~~~~~L~l~~d~GnLvl~d~ 146 (429)
+.+.+.+|.+.|-|..+++ |.| |.. ..+++|.. +...... ..+.+.|.++ |||||+|.
T Consensus 12 ~p~~~~s~~~~L~l~~dGn-----Lvl-~~~-------------~~~~iWss~~t~~~~~-~~~~~~L~~~-GNlvl~d~ 70 (114)
T PF01453_consen 12 SPLTSSSGNYTLILQSDGN-----LVL-YDS-------------NGSVIWSSNNTSGRGN-SGCYLVLQDD-GNLVLYDS 70 (114)
T ss_dssp EEEEECETTEEEEEETTSE-----EEE-EET-------------TTEEEEE--S-TTSS--SSEEEEEETT-SEEEEEET
T ss_pred cccccccccccceECCCCe-----EEE-EcC-------------CCCEEEEecccCCccc-cCeEEEEeCC-CCEEEEee
Confidence 4565655889999987764 223 432 45679999 4444332 3578999999 99999999
Q ss_pred CCCcEEEeeecCCCceEEEEee--CCCEEEEeccCCCcccceeeeeccCCc
Q 036124 147 GGNPIVITSVKADGNTSASLLK--TGNLVLYEMNSDGSERRELWQSFDYPT 195 (429)
Q Consensus 147 ~g~~vWst~~~~~~~~~a~LlD--~GNLVL~d~~~~~~~~~~lWQSFd~PT 195 (429)
.+.+||++... ...+.+.+++ .||++ +... . .++|.|-+.|+
T Consensus 71 ~~~~lW~Sf~~-ptdt~L~~q~l~~~~~~-~~~~-~----~~sw~s~~dps 114 (114)
T PF01453_consen 71 SGNVLWQSFDY-PTDTLLPGQKLGDGNVT-GKND-S----LTSWSSNTDPS 114 (114)
T ss_dssp TSEEEEESTTS-SS-EEEEEET--TSEEE-EEST-S----SEEEESS----
T ss_pred cceEEEeecCC-CccEEEeccCcccCCCc-cccc-e----EEeECCCCCCC
Confidence 99999999221 2457788888 88888 5432 2 58999977764
No 12
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=97.52 E-value=0.00012 Score=58.05 Aligned_cols=45 Identities=22% Similarity=0.527 Sum_probs=33.8
Q ss_pred ecccccCCCC-----CCChhhhHHhcccCCceEEEEeecCCCCCceEEecCC
Q 036124 337 GDGFKFKESD-----NMTLSDCKVKCFQNCSCVAYASINESNDTGCEIWSSG 383 (429)
Q Consensus 337 l~~v~lpd~~-----~~s~~~C~~~CL~nCSC~Ayay~~~~~g~gC~lW~~~ 383 (429)
++++.++..+ ..+.++|++.|+.+|+|.||.|.. +...|+++...
T Consensus 9 ~~~~~~~g~d~~~~~~~s~~~Cq~~C~~~~~C~afT~~~--~~~~C~lk~~~ 58 (73)
T cd01100 9 GSNVDFRGGDLSTVFASSAEQCQAACTADPGCLAFTYNT--KSKKCFLKSSE 58 (73)
T ss_pred cCCCccccCCcceeecCCHHHHHHHcCCCCCceEEEEEC--CCCeEEcccCC
Confidence 3466666543 458999999999999999999962 23349998654
No 13
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=92.24 E-value=0.14 Score=39.73 Aligned_cols=51 Identities=18% Similarity=0.384 Sum_probs=37.6
Q ss_pred eEEecccccCCCC-----CCChhhhHHhcccCCc-eEEEEeecCCCCCceEEecCCCcc
Q 036124 334 FMNGDGFKFKESD-----NMTLSDCKVKCFQNCS-CVAYASINESNDTGCEIWSSGTKF 386 (429)
Q Consensus 334 F~~l~~v~lpd~~-----~~s~~~C~~~CL~nCS-C~Ayay~~~~~g~gC~lW~~~L~n 386 (429)
|.++++..+.... ..++++|.+.|+.+=. |.+|.|.. ....|.+...+-..
T Consensus 4 f~~~~~~~l~~~~~~~~~v~s~~~C~~~C~~~~~~C~s~~y~~--~~~~C~L~~~~~~~ 60 (79)
T PF00024_consen 4 FERIPGYRLSGHSIKEINVPSLEECAQLCLNEPRRCKSFNYDP--SSKTCYLSSSDRSS 60 (79)
T ss_dssp EEEEEEEEEESCEEEEEEESSHHHHHHHHHHSTT-ESEEEEET--TTTEEEEECSSSSS
T ss_pred eEEECCEEEeCCcceEEcCCCHHHHHhhcCcCcccCCeEEEEC--CCCEEEEcCCCCCc
Confidence 5566666665543 4489999999999999 99999962 22349998766544
No 14
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=89.42 E-value=0.55 Score=38.09 Aligned_cols=45 Identities=18% Similarity=0.421 Sum_probs=32.9
Q ss_pred cccccCCCC-----CCChhhhHHhcccCCceEEEEeecCCC-CCceEEecC
Q 036124 338 DGFKFKESD-----NMTLSDCKVKCFQNCSCVAYASINESN-DTGCEIWSS 382 (429)
Q Consensus 338 ~~v~lpd~~-----~~s~~~C~~~CL~nCSC~Ayay~~~~~-g~gC~lW~~ 382 (429)
.++.++..+ ..+.++|++.|..+=.|.||.|..+.. ...|++...
T Consensus 7 ~~~df~G~Dl~~~~~~~~~~Cq~~Ct~~~~C~~FTf~~~~~~~~~C~LK~s 57 (79)
T smart00223 7 KNVDFRGSDINTVYVPSAQVCQKRCTSHPRCLFFTFSTNEPPEEKCLLKDS 57 (79)
T ss_pred cCccccCceeeeeecCCHHHHHHhhcCCCCccEEEeeCCCCCCCEeEeCcC
Confidence 466666554 668999999999999999999963111 126988643
No 15
>smart00605 CW CW domain.
Probab=87.32 E-value=2.1 Score=35.40 Aligned_cols=54 Identities=13% Similarity=0.335 Sum_probs=38.5
Q ss_pred CCChhhhHHhcccCCceEEEEeecCCCCCceEEecC-CCccceEec-CCCceEEEEEec
Q 036124 347 NMTLSDCKVKCFQNCSCVAYASINESNDTGCEIWSS-GTKFTVTSI-TDRRIIFMAREA 403 (429)
Q Consensus 347 ~~s~~~C~~~CL~nCSC~Ayay~~~~~g~gC~lW~~-~L~n~~~~~-~~~~~lylkl~~ 403 (429)
..+.++|...|..+..|+.+... ....|.++.- .+..+++.. +.+..+=+|+..
T Consensus 21 ~~sw~~Ci~~C~~~~~Cvlay~~---~~~~C~~f~~~~~~~v~~~~~~~~~~VAfK~~~ 76 (94)
T smart00605 21 TLSWDECIQKCYEDSNCVLAYGN---SSETCYLFSYGTVLTVKKLSSSSGKKVAFKVST 76 (94)
T ss_pred CCCHHHHHHHHhCCCceEEEecC---CCCceEEEEcCCeEEEEEccCCCCcEEEEEEeC
Confidence 56889999999999999987653 2356988764 456666544 356667777753
No 16
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=86.99 E-value=1.8 Score=33.49 Aligned_cols=50 Identities=16% Similarity=0.328 Sum_probs=34.3
Q ss_pred CCChhhhHHhcccCCceEEEEeecCCCCCceEEecC-CCccceEec-CCCceEEEE
Q 036124 347 NMTLSDCKVKCFQNCSCVAYASINESNDTGCEIWSS-GTKFTVTSI-TDRRIIFMA 400 (429)
Q Consensus 347 ~~s~~~C~~~CL~nCSC~Ayay~~~~~g~gC~lW~~-~L~n~~~~~-~~~~~lylk 400 (429)
..+.++|-..|..+-.|.++.+. ...|.++.- ++..+++.. .++..+-+|
T Consensus 19 ~~sw~~Cv~~C~~~~~C~la~~~----~~~C~~y~~~~i~~v~~~~~~~~~~VA~K 70 (71)
T PF08277_consen 19 NTSWDDCVQKCYNDENCVLAYFD----SGKCYLYNYGSISTVQKTDSSSGNKVAFK 70 (71)
T ss_pred CCCHHHHhHHhCCCCEEEEEEeC----CCCEEEEEcCCEEEEEEeecCCCeEEEEE
Confidence 66889999999999999998883 456999863 333444432 334444444
No 17
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=82.56 E-value=0.97 Score=32.28 Aligned_cols=23 Identities=17% Similarity=0.495 Sum_probs=17.3
Q ss_pred CCChhhhHHhcccCCceEEEEee
Q 036124 347 NMTLSDCKVKCFQNCSCVAYASI 369 (429)
Q Consensus 347 ~~s~~~C~~~CL~nCSC~Ayay~ 369 (429)
..+.++|++.|..+=.|.+|.|.
T Consensus 15 ~~s~~~C~~~C~~~~~C~~~~~~ 37 (51)
T PF14295_consen 15 ASSPEECQAACAADPGCQAFTFN 37 (51)
T ss_dssp ---HHHHHHHHHTSTT--EEEEE
T ss_pred CCCHHHHHHHccCCCCCCEEEEE
Confidence 56899999999999999999996
No 18
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=70.26 E-value=11 Score=30.16 Aligned_cols=36 Identities=17% Similarity=0.480 Sum_probs=27.4
Q ss_pred CCChhhhHHhccc--CCceEEEEeecCCCCCceEEecCCC
Q 036124 347 NMTLSDCKVKCFQ--NCSCVAYASINESNDTGCEIWSSGT 384 (429)
Q Consensus 347 ~~s~~~C~~~CL~--nCSC~Ayay~~~~~g~gC~lW~~~L 384 (429)
..+.++|++.|++ +=.|.++.|.. ....|.+=..+.
T Consensus 24 ~~s~~~C~~~C~~~~~f~CrSf~y~~--~~~~C~L~~~~~ 61 (80)
T cd01099 24 VASLEECLRKCLEETEFTCRSFNYNY--KSKECILSDEDR 61 (80)
T ss_pred cCCHHHHHHHhCCCCCceEeEEEEEc--CCCEEEEeCCCc
Confidence 4799999999999 88899999952 233498854444
No 19
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=50.72 E-value=45 Score=33.55 Aligned_cols=42 Identities=24% Similarity=0.442 Sum_probs=32.5
Q ss_pred CCccEEEeCCCCCCCCC----CeEEEEE-cCCCcEEEEeCCCCcEEEe
Q 036124 112 RNKPVWVANRNNPILDK----SGSLTID-STDGNLKILHNGGNPIVIT 154 (429)
Q Consensus 112 ~~tvVWvANr~~pv~~~----~~~L~l~-~d~GnLvl~d~~g~~vWst 154 (429)
+.++.|.|.|..|+-.+ +..+.++ -| |+|.-.|..|+.||.-
T Consensus 168 ~~~~~w~~~~~~PiF~splcv~~sv~i~~Vd-G~l~~f~~sG~qvwr~ 214 (354)
T KOG4649|consen 168 SSTEFWAATRFGPIFASPLCVGSSVIITTVD-GVLTSFDESGRQVWRP 214 (354)
T ss_pred CcceehhhhcCCccccCceeccceEEEEEec-cEEEEEcCCCcEEEee
Confidence 56889999999998643 1234443 56 9999899999999976
No 20
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=41.50 E-value=4e+02 Score=27.19 Aligned_cols=74 Identities=15% Similarity=0.259 Sum_probs=40.1
Q ss_pred CCccEEEeCCCCCCCCC----CeEEEEEcCCCcEEEEeC-CCCcEEEe-eecC-------CCc-----eEEEEeeCCCEE
Q 036124 112 RNKPVWVANRNNPILDK----SGSLTIDSTDGNLKILHN-GGNPIVIT-SVKA-------DGN-----TSASLLKTGNLV 173 (429)
Q Consensus 112 ~~tvVWvANr~~pv~~~----~~~L~l~~d~GnLvl~d~-~g~~vWst-~~~~-------~~~-----~~a~LlD~GNLV 173 (429)
...++|..+...++... ...+.+...+|.|+-+|. +|.++|+. .... ... .+..-..+|.++
T Consensus 139 tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 139 DGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVS 218 (394)
T ss_pred CCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEE
Confidence 46678877654332211 134444443377887886 68899987 2110 111 111223566677
Q ss_pred EEeccCCCcccceeee
Q 036124 174 LYEMNSDGSERRELWQ 189 (429)
Q Consensus 174 L~d~~~~~~~~~~lWQ 189 (429)
-.+..++ +.+|+
T Consensus 219 a~d~~~G----~~~W~ 230 (394)
T PRK11138 219 AVLMEQG----QLIWQ 230 (394)
T ss_pred EEEccCC----hhhhe
Confidence 6666543 68897
No 21
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=35.91 E-value=1.3e+02 Score=30.75 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=34.9
Q ss_pred EEEEEcCCCcEEEEeC-CCCcEEEe-eecC--CC-----ceEEEEeeCCCEEEEeccCCCcccceeeee
Q 036124 131 SLTIDSTDGNLKILHN-GGNPIVIT-SVKA--DG-----NTSASLLKTGNLVLYEMNSDGSERRELWQS 190 (429)
Q Consensus 131 ~L~l~~d~GnLvl~d~-~g~~vWst-~~~~--~~-----~~~a~LlD~GNLVL~d~~~~~~~~~~lWQS 190 (429)
.+-+...+|.|+-.|. +|.++|+. .... .. .....-..+|.|+-.|..++ +++|+-
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG----~~~W~~ 186 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDG----AVKWTV 186 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCC----CEeeee
Confidence 4555544388888886 79999998 3211 11 11222335677888887654 799986
No 22
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=35.10 E-value=63 Score=20.56 Aligned_cols=20 Identities=25% Similarity=0.594 Sum_probs=15.0
Q ss_pred EEEEcCCCcEEEEeCCCCcEE
Q 036124 132 LTIDSTDGNLKILHNGGNPIV 152 (429)
Q Consensus 132 L~l~~d~GnLvl~d~~g~~vW 152 (429)
+.+..+ |++++.|..+..||
T Consensus 7 vav~~~-g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 7 VAVDSD-GNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEETT-SEEEEEECCCTEEE
T ss_pred EEEeCC-CCEEEEECCCCEEE
Confidence 677777 88888887666665
No 23
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=35.06 E-value=51 Score=26.30 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=15.1
Q ss_pred EEEEcCCC---cEEEEeCCCCcEEEe
Q 036124 132 LTIDSTDG---NLKILHNGGNPIVIT 154 (429)
Q Consensus 132 L~l~~d~G---nLvl~d~~g~~vWst 154 (429)
+.|.+|+| .|||.|++|..||..
T Consensus 23 V~IeDdqg~HfRlvvRd~~g~mvWRa 48 (70)
T PF06006_consen 23 VFIEDDQGTHFRLVVRDTEGQMVWRA 48 (70)
T ss_dssp EEEES-SSS--EEEEE-SS--EEEEE
T ss_pred eeeccCCCCeEEEEEEcCCCcEEEEe
Confidence 56666766 589999999999988
No 24
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=34.08 E-value=1.6e+02 Score=29.67 Aligned_cols=78 Identities=19% Similarity=0.383 Sum_probs=0.0
Q ss_pred ccCCCCCccEEEeC----------CCCCCCCCCeEEEEEcCCCcEEEEe-CCCCcEEEe-eecC-------CCceEEEEe
Q 036124 107 YYNSERNKPVWVAN----------RNNPILDKSGSLTIDSTDGNLKILH-NGGNPIVIT-SVKA-------DGNTSASLL 167 (429)
Q Consensus 107 ~~~~~~~tvVWvAN----------r~~pv~~~~~~L~l~~d~GnLvl~d-~~g~~vWst-~~~~-------~~~~~a~Ll 167 (429)
........++|..+ +..|+....-......+ |.|.-.| .+|.++|+. .... .......-.
T Consensus 34 ~~~~~~~~~~W~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~-g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~ 112 (377)
T TIGR03300 34 FQPTVKVDQVWSASVGDGVGHYYLRLQPAVAGGKVYAADAD-GTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGT 112 (377)
T ss_pred ccccCcceeeeEEEcCCCcCccccccceEEECCEEEEECCC-CeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEc
Q ss_pred eCCCEEEEeccCCCcccceeee
Q 036124 168 KTGNLVLYEMNSDGSERRELWQ 189 (429)
Q Consensus 168 D~GNLVL~d~~~~~~~~~~lWQ 189 (429)
.+|+|+-.|..++ +++|+
T Consensus 113 ~~g~l~ald~~tG----~~~W~ 130 (377)
T TIGR03300 113 EKGEVIALDAEDG----KELWR 130 (377)
T ss_pred CCCEEEEEECCCC----cEeee
No 25
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=33.36 E-value=3.2e+02 Score=28.32 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=49.7
Q ss_pred cEEEeCCCCCCCCCCeEEEEEcCCCcEEEEeC-CCC-cEEEe-ee----------cCCCceEEEEeeCCCEEEEeccCCC
Q 036124 115 PVWVANRNNPILDKSGSLTIDSTDGNLKILHN-GGN-PIVIT-SV----------KADGNTSASLLKTGNLVLYEMNSDG 181 (429)
Q Consensus 115 vVWvANr~~pv~~~~~~L~l~~d~GnLvl~d~-~g~-~vWst-~~----------~~~~~~~a~LlD~GNLVL~d~~~~~ 181 (429)
.--.||.+.-..+....+.-+.. |+|+++.+ +|. -+|.- .. .+.....|+...+|..+|....++
T Consensus 250 cfvsanPd~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS- 327 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS- 327 (430)
T ss_pred EeeecCcccccccceeEEEecCC-ccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc-
Confidence 34467776666655456777888 99999876 454 47876 21 133467899999999999877643
Q ss_pred cccceeeee
Q 036124 182 SERRELWQS 190 (429)
Q Consensus 182 ~~~~~lWQS 190 (429)
. ..||+=
T Consensus 328 ~--vkLWEi 334 (430)
T KOG0640|consen 328 T--VKLWEI 334 (430)
T ss_pred e--eeeeee
Confidence 2 568973
No 26
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=33.30 E-value=3.1e+02 Score=25.06 Aligned_cols=74 Identities=22% Similarity=0.369 Sum_probs=44.4
Q ss_pred CCccEEEeCCCCCCCCC----CeEE-EEEcCCCcEEEEe-CCCCcEEEe--eec-CCC----------ceEEEEe-eCCC
Q 036124 112 RNKPVWVANRNNPILDK----SGSL-TIDSTDGNLKILH-NGGNPIVIT--SVK-ADG----------NTSASLL-KTGN 171 (429)
Q Consensus 112 ~~tvVWvANr~~pv~~~----~~~L-~l~~d~GnLvl~d-~~g~~vWst--~~~-~~~----------~~~a~Ll-D~GN 171 (429)
..+++|...-+.++... .+.+ ....+ |.|...| .+|.++|.. ... ... ...+.+- .+|.
T Consensus 55 tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~-~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 133 (238)
T PF13360_consen 55 TGKVLWRFDLPGPISGAPVVDGGRVYVGTSD-GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK 133 (238)
T ss_dssp TSEEEEEEECSSCGGSGEEEETTEEEEEETT-SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE
T ss_pred CCCEEEEeeccccccceeeecccccccccce-eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCc
Confidence 67889988765553321 2233 44456 7888888 689999994 221 000 0112222 3788
Q ss_pred EEEEeccCCCcccceeeee
Q 036124 172 LVLYEMNSDGSERRELWQS 190 (429)
Q Consensus 172 LVL~d~~~~~~~~~~lWQS 190 (429)
++..|..++ +.+|+-
T Consensus 134 l~~~d~~tG----~~~w~~ 148 (238)
T PF13360_consen 134 LVALDPKTG----KLLWKY 148 (238)
T ss_dssp EEEEETTTT----EEEEEE
T ss_pred EEEEecCCC----cEEEEe
Confidence 888886654 688876
No 27
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=32.76 E-value=85 Score=28.91 Aligned_cols=48 Identities=23% Similarity=0.392 Sum_probs=29.0
Q ss_pred CcEEEEeC-CCCcEEEeeecC-CCceEE-EE---------eeCCCEEEEeccCCCcccceeeee
Q 036124 139 GNLKILHN-GGNPIVITSVKA-DGNTSA-SL---------LKTGNLVLYEMNSDGSERRELWQS 190 (429)
Q Consensus 139 GnLvl~d~-~g~~vWst~~~~-~~~~~a-~L---------lD~GNLVL~d~~~~~~~~~~lWQS 190 (429)
|.|...|. +|..+|+..... .....+ .+ ..+|+|+..|..++ +++|+-
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG----~~~W~~ 62 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTG----KVLWRF 62 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTS----EEEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCC----CEEEEe
Confidence 88888897 888999982111 111111 22 36666666776443 688875
No 28
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=27.19 E-value=92 Score=26.04 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=21.9
Q ss_pred CCccEEEeCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 036124 112 RNKPVWVANRNNPILDKSGSLTIDSTDGNLKILH 145 (429)
Q Consensus 112 ~~tvVWvANr~~pv~~~~~~L~l~~d~GnLvl~d 145 (429)
..++.|+-+....+.. ..++.++.+ |||.+.+
T Consensus 33 ~P~i~W~~~~~~~i~~-~~Ri~~~~~-GnL~fs~ 64 (95)
T cd05845 33 PLRIYWMNSDLLHITQ-DERVSMGQN-GNLYFAN 64 (95)
T ss_pred CCEEEEECCCCccccc-cccEEECCC-ceEEEEE
Confidence 6678888544444543 457888888 9998854
No 29
>smart00765 MANEC The MANEC domain was formerly called MANSC. This domain, comprising 8 conserved cysteines, is found in the N terminus of higher multicellular animal membrane and extracellular proteins. It is postulated that this domain may play a role in the formation of protein complexes involving various protease activators and inhibitors. It is possible that some of the cysteine residues in the MANSC domain form structurally important disulfide bridges. All of the MANSC-containing proteins contain predicted transmembrane regions and signal peptides. It has been proposed that the MANSC domain in HAI-1 might function through binding with hepatocyte growth factor activator and matriptase.
Probab=25.67 E-value=1.5e+02 Score=24.82 Aligned_cols=34 Identities=18% Similarity=0.358 Sum_probs=24.9
Q ss_pred CCChhhhHHhcccCCceEEEEeec-CCC-CCceEEe
Q 036124 347 NMTLSDCKVKCFQNCSCVAYASIN-ESN-DTGCEIW 380 (429)
Q Consensus 347 ~~s~~~C~~~CL~nCSC~Ayay~~-~~~-g~gC~lW 380 (429)
..+.+||..+|=+.=+|..+.+.. ..+ ...|++.
T Consensus 37 ~~s~edC~~aCC~~~~CnlAv~e~~~~~~~~~CyLf 72 (93)
T smart00765 37 VNTWEDCVRACCSTPNCNLAVFELRREDAEGNCYLF 72 (93)
T ss_pred cCCHHHHHHHHcCCCCCcEEEEeccCCCCCCceEEE
Confidence 568899999999998998888742 112 2339884
No 30
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=24.80 E-value=1.2e+02 Score=19.14 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=8.5
Q ss_pred CcEEEEeC-CCCcEEE
Q 036124 139 GNLKILHN-GGNPIVI 153 (429)
Q Consensus 139 GnLvl~d~-~g~~vWs 153 (429)
|.|+-.|. +|.++|.
T Consensus 16 g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 16 GTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEEcccCcEEEE
Confidence 55555554 4556664
No 31
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=21.17 E-value=5.9e+02 Score=25.69 Aligned_cols=93 Identities=17% Similarity=0.256 Sum_probs=55.2
Q ss_pred CCCCcc-EE-----EeCCCCCCCCCCeEEEEEcCCCcEEEEeCCCC-cEEEe-ee---------cCCCceEEEEeeCCCE
Q 036124 110 SERNKP-VW-----VANRNNPILDKSGSLTIDSTDGNLKILHNGGN-PIVIT-SV---------KADGNTSASLLKTGNL 172 (429)
Q Consensus 110 ~~~~tv-VW-----vANr~~pv~~~~~~L~l~~d~GnLvl~d~~g~-~vWst-~~---------~~~~~~~a~LlD~GNL 172 (429)
+++.|+ || +++|+--....--.+.+...|+.|+.-|.+|. -||.- .. .......+.+.-+|-.
T Consensus 102 seDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm 181 (311)
T KOG0315|consen 102 SEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM 181 (311)
T ss_pred CCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE
Confidence 345554 56 35555222211125778888899999998887 48987 21 0123457788889988
Q ss_pred EEEeccCCCcccceeeeeccCCccccC-CCCeee
Q 036124 173 VLYEMNSDGSERRELWQSFDYPTDTLL-PGMKLG 205 (429)
Q Consensus 173 VL~d~~~~~~~~~~lWQSFd~PTDTLL-PGq~L~ 205 (429)
+..-.+.+ . =.+|..-.+-+-|.| |=-|+.
T Consensus 182 l~a~nnkG-~--cyvW~l~~~~~~s~l~P~~k~~ 212 (311)
T KOG0315|consen 182 LAAANNKG-N--CYVWRLLNHQTASELEPVHKFQ 212 (311)
T ss_pred EEEecCCc-c--EEEEEccCCCccccceEhhhee
Confidence 77654322 2 589998775544432 444443
Done!