BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036125
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VE3|A Chain A, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE3|B Chain B, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE4|A Chain A, Substrate Free Cyanobacterial Cyp120a1
pdb|2VE4|B Chain B, Substrate Free Cyanobacterial Cyp120a1
Length = 444
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 115/259 (44%), Gaps = 20/259 (7%)
Query: 29 SNLSQPNVPPGSFGFPFIGESFEFLSYGWKGHPEKFIFTRMTKYSSHAFKTSLLGEPTAV 88
+NL+ +PPG FG P++GE+ FL+ G G + F + FKT L G+
Sbjct: 6 TNLNSLPIPPGDFGLPWLGETLNFLNDGDFGKKRQQQFGPI-------FKTRLFGKNVIF 58
Query: 89 LCGPAGNKFLSSNENNLVNSWWPDSVNKIFPFTSNSSSKCEA-KKMRKLLLGFLKPEALQ 147
+ G N+FL + E + WP S + + ++ E + RK+L P L
Sbjct: 59 ISGALANRFLFTKEQETFQATWPLSTRILLGPNALATQMGEIHRSRRKILYQAFLPRTLD 118
Query: 148 RYIDSMDQIAQSRFVAHWEHKDEVIVYSLAEKFTILLACRLLLSIEDPHRVTRFSDPFYH 207
Y+ MD I Q ++ W +EVI Y + T +A L + + F P++
Sbjct: 119 SYLPKMDGIVQG-YLEQWGKANEVIWYPQLRRMTFDVAATLFMGEKVSQNPQLF--PWFE 175
Query: 208 LLASGVLFIPIDFP----GIPLKASSFVRKELRRIIEHRKIYPDEGEASPTQHILSRILL 263
G+ +PI P G +A + + EL +II+ R+ P E + L +L
Sbjct: 176 TYIQGLFSLPIPLPNTLFGKSQRARALLLAELEKIIKARQQQPPSEEDA-----LGILLA 230
Query: 264 TSDENGNFLTDLDIADKIL 282
D+N L+ ++ D+IL
Sbjct: 231 ARDDNNQPLSLPELKDQIL 249
>pdb|1IZO|A Chain A, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|1IZO|B Chain B, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|1IZO|C Chain C, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|2ZQX|A Chain A, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQX|B Chain B, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQX|C Chain C, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQJ|A Chain A, Substrate-Free Form Of Cytochrome P450bsbeta
pdb|2ZQJ|B Chain B, Substrate-Free Form Of Cytochrome P450bsbeta
pdb|2ZQJ|C Chain C, Substrate-Free Form Of Cytochrome P450bsbeta
Length = 417
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 3/125 (2%)
Query: 64 FIFTRMTKYSSHAFKTSLLGEPTAVLCGPAGNKFLSSNENNLVNSWWPDSVNK-IFPFTS 122
FI R +Y+S F+ LLG+ + G K + + P V K +F +
Sbjct: 24 FIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYDTDRFQRQNALPKRVQKSLFGVNA 83
Query: 123 NSSSKCEAKKMRKLL-LGFLKPEALQRYIDSMDQIAQSRFVAHWEHKDEVIVYSLAEKFT 181
A RK+L L + P +R + M + ++ V WE DEV+++ A++
Sbjct: 84 IQGMDGSAHIHRKMLFLSLMTPPHQKRLAELMTEEWKAA-VTRWEKADEVVLFEEAKEIL 142
Query: 182 ILLAC 186
+AC
Sbjct: 143 CRVAC 147
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 182 ILLACRLLLSIEDPHRVTRFSDPFYHLLASGVLFIPIDFPGIPLKASSFVRKELRRIIEH 241
++ A LL I+D + ++D F LAS P IP+K E + E
Sbjct: 70 LVNALNLLKPIKDKYSGVTYADLFQ--LASATAIEEAGGPKIPMKYGRVDVTEPEQCPEE 127
Query: 242 RKIYPDEGEASPTQHI 257
++ PD G SP QH+
Sbjct: 128 GRL-PDAGPPSPAQHL 142
>pdb|3DAM|A Chain A, Crystal Structure Of Allene Oxide Synthase
pdb|3DAN|A Chain A, Crystal Structure Of Allene Oxide Synthase
pdb|3DBM|A Chain A, Crystal Structure Of Allene Oxide Synthase
Length = 473
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 16/72 (22%)
Query: 38 PGSFGFPF---IGESFEFLSYGWKGHPEKFIFTRMTKYSSHAFKTSLLGEPTAVLCGPAG 94
PGS+G PF I + E+ YG G E F +RM KY S F+ ++ P G
Sbjct: 12 PGSYGIPFFQPIKDRLEYF-YGTGGRDEYFR-SRMQKYQSTVFRANM----------PPG 59
Query: 95 NKFLSSNENNLV 106
F+SSN +V
Sbjct: 60 -PFVSSNPKVIV 70
>pdb|2RCM|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome
P450 74a) At 1.73 A Resolution
pdb|2RCM|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome
P450 74a) At 1.73 A Resolution
pdb|3DSJ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome
P450 74a, Cyp74a) Complexed With 13(S)-Hod At 1.60 A
Resolution
pdb|3DSJ|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome
P450 74a, Cyp74a) Complexed With 13(S)-Hod At 1.60 A
Resolution
pdb|3DSK|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome
P450 74a, Cyp74a) Complexed With 12r,13s-Vernolic Acid
At 1.55 A Resolution
pdb|3DSK|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome
P450 74a, Cyp74a) Complexed With 12r,13s-Vernolic Acid
At 1.55 A Resolution
Length = 495
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 38 PGSFGFPFIGESFEFLSYGWKGHPEKFIFTRMTKYSSHAFKTSL 81
PG++G P +G + Y + E+F +R+ KY+S ++ ++
Sbjct: 31 PGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNM 74
>pdb|2RCH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCH|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|2RCL|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|3CLI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3CLI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3DSI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
pdb|3DSI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
Length = 495
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 38 PGSFGFPFIGESFEFLSYGWKGHPEKFIFTRMTKYSSHAFKTSL 81
PG++G P +G + Y + E+F +R+ KY+S ++ ++
Sbjct: 31 PGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNM 74
>pdb|3N2X|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
pdb|3N2X|B Chain B, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
pdb|3N2X|C Chain C, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
pdb|3N2X|D Chain D, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
Length = 298
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 60 HPEKFIFTRMTKYSSHAFKTSLLGEPTAVLCGPAGNKFLSSNENNLVNSWWPDSVNK 116
HP FT + Y H F T LLG A+ A F NL+ +W V K
Sbjct: 183 HPH---FTVLCGYDDHLFNTLLLGGDGAI---SASGNFAPQVSVNLLKAWRDGDVAK 233
>pdb|3NEV|A Chain A, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|B Chain B, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|C Chain C, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|D Chain D, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
Length = 298
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 60 HPEKFIFTRMTKYSSHAFKTSLLGEPTAVLCGPAGNKFLSSNENNLVNSWWPDSVNK 116
HP FT + Y H F T LLG A+ A F NL+ +W V K
Sbjct: 183 HPH---FTVLCGYDDHLFNTLLLGGDGAI---SASGNFAPQVSVNLLKAWRDGDVAK 233
>pdb|2V8Z|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V8Z|B Chain B, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V8Z|C Chain C, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V8Z|D Chain D, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
Length = 343
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 60 HPEKFIFTRMTKYSSHAFKTSLLGEPTAVLCGPAGNKFLSSNENNLVNSWWPDSVNK 116
HP FT + Y H F T LLG A+ A F NL+ +W V K
Sbjct: 212 HPH---FTVLCGYDDHLFNTLLLGGDGAI---SASGNFAPQVSVNLLKAWRDGDVAK 262
>pdb|2V9D|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V9D|B Chain B, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V9D|C Chain C, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V9D|D Chain D, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
Length = 343
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 60 HPEKFIFTRMTKYSSHAFKTSLLGEPTAVLCGPAGNKFLSSNENNLVNSWWPDSVNK 116
HP FT + Y H F T LLG A+ A F NL+ +W V K
Sbjct: 212 HPH---FTVLCGYDDHLFNTLLLGGDGAI---SASGNFAPQVSVNLLKAWRDGDVAK 262
>pdb|3KAJ|A Chain A, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAJ|B Chain B, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAK|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine Bound.
pdb|3KAK|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine Bound.
pdb|3KAL|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
pdb|3KAL|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
Length = 499
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 134 RKLLLGFLKPEALQRYIDSMDQIAQSR--FVAHWEHKDEVIVYSLAE 178
+K+ KP L+R++++ D IA+ R F W +D IV E
Sbjct: 334 KKIQQELAKPGVLERFVENKDHIAKLRACFAGLWSLEDSDIVKKAIE 380
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,162,261
Number of Sequences: 62578
Number of extensions: 327289
Number of successful extensions: 809
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 800
Number of HSP's gapped (non-prelim): 15
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)