BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036126
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 184 bits (468), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/272 (38%), Positives = 156/272 (57%), Gaps = 20/272 (7%)
Query: 23 PAYSLSKKFTTSYFDEAFSRLYGDQNLIVLKEGKSVRISLDEHTGCGFKSRSTYQYAFFS 82
P Y S + T+ FD+ ++ L+G Q+ V + S+ I LD +G GFKS + Y+ +F
Sbjct: 6 PGYYPSSQITSLGFDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFG 63
Query: 83 TSVKLPAANYTAGVVVTFYTSNGDVYKDSHDELDFEFLGHANNGSWVLQTNLYGNGSIGR 142
++KL + YTAGV+ +FY SN Y HDE+D EFLG + LQTN++ GS
Sbjct: 64 ANIKL-QSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDY 122
Query: 143 ---GREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIR-VTQKVEAMAGDYPSKPMS 198
GRE R L FDP++++HNY+I WT +F+VD VPIR +K +A +P +PM
Sbjct: 123 NIIGRELRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDAT---FPLRPMW 179
Query: 199 LYATIWNGSDWATGGGKYKVDYAYAPFVSQYSNFVLQAC---SNSDCDDS-------LTT 248
+Y ++W+ S WAT GKYK DY Y PFV +Y +F L +C + S C+ + L+
Sbjct: 180 VYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQ 239
Query: 249 EERNKMKEFRSKYVTYSYCVDSKRYPIPLPEC 280
++ M+ + Y+ Y+YC D R PEC
Sbjct: 240 QQVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 271
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 163/290 (56%), Gaps = 22/290 (7%)
Query: 5 FKELILCLFFMTSVV---LFIPAYSLSKKFTTSYFDEAFSRLYGDQNLIVLKEGKSVRIS 61
F L+ L F +S + P Y S + T+ FD+ ++ L+G Q+ V + S+ I
Sbjct: 9 FLHLLPILMFSSSCLGQGPPSPGYYPSSQITSLGFDQGYTNLWGPQHQRV--DQGSLTIW 66
Query: 62 LDEHTGCGFKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHDELDFEFLG 121
LD +G GFKS + Y+ +F ++KL + YTAGV+ +FY SN Y HDE+D EFLG
Sbjct: 67 LDSTSGSGFKSINRYRSGYFGANIKL-QSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLG 125
Query: 122 HANNGSWVLQTNLYGNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIR- 180
+ LQTN++ GS RE R L FDP++++HNY+I WT +F+VD VPIR
Sbjct: 126 TIPGKPYTLQTNVFIEGS--GDREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRR 183
Query: 181 VTQKVEAMAGDYPSKPMSLYATIWNGSDWATGGGKYKVDYAYAPFVSQYSNFVLQAC--- 237
+K +A +P +P+ +Y ++W+ S WAT GKYK DY Y PFV +Y +F L +C
Sbjct: 184 YPRKSDAT---FPLRPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVE 240
Query: 238 SNSDCDDS-------LTTEERNKMKEFRSKYVTYSYCVDSKRYPIPLPEC 280
+ S C+ + L+ ++ M+ + Y+ Y+YC D R PEC
Sbjct: 241 AASSCNPASVSPYGQLSQQQVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 290
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 184 bits (466), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/272 (38%), Positives = 156/272 (57%), Gaps = 20/272 (7%)
Query: 23 PAYSLSKKFTTSYFDEAFSRLYGDQNLIVLKEGKSVRISLDEHTGCGFKSRSTYQYAFFS 82
P Y S + T+ FD+ ++ L+G Q+ V + S+ I LD +G GFKS + Y+ +F
Sbjct: 9 PGYYPSSQITSLGFDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFG 66
Query: 83 TSVKLPAANYTAGVVVTFYTSNGDVYKDSHDELDFEFLGHANNGSWVLQTNLYGNGSIGR 142
++KL + YTAGV+ +FY SN Y HDE+D EFLG + LQTN++ GS
Sbjct: 67 ANIKL-QSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDY 125
Query: 143 ---GREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIR-VTQKVEAMAGDYPSKPMS 198
GRE R L FDP++++HNY+I WT +F+VD VPIR +K +A +P +P+
Sbjct: 126 NIIGREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDAT---FPLRPLW 182
Query: 199 LYATIWNGSDWATGGGKYKVDYAYAPFVSQYSNFVLQAC---SNSDCDDS-------LTT 248
+Y ++W+ S WAT GKYK DY Y PFV +Y +F L +C + S C+ + L+
Sbjct: 183 VYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQ 242
Query: 249 EERNKMKEFRSKYVTYSYCVDSKRYPIPLPEC 280
++ M+ + Y+ Y+YC D R PEC
Sbjct: 243 QQVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 274
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/269 (38%), Positives = 155/269 (57%), Gaps = 19/269 (7%)
Query: 23 PAYSLSKKFTTSYFDEAFSRLYGDQNLIVLKEGKSVRISLDEHTGCGFKSRSTYQYAFFS 82
P Y S + T+ FD+ ++ L+G Q+ V + S+ I LD +G GFKS + Y+ +F
Sbjct: 7 PGYYPSSQITSLGFDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFG 64
Query: 83 TSVKLPAANYTAGVVVTFYTSNGDVYKDSHDELDFEFLGHANNGSWVLQTNLYGNGSIGR 142
++KL + YTAGV+ +FY SN Y HDE+D EFLG + LQTN++ GS
Sbjct: 65 ANIKL-QSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGS--G 121
Query: 143 GREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIR-VTQKVEAMAGDYPSKPMSLYA 201
RE R L FDP++++HNY+I WT +F+VD VPIR +K +A +P +P+ +Y
Sbjct: 122 DREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDAT---FPLRPLWVYG 178
Query: 202 TIWNGSDWATGGGKYKVDYAYAPFVSQYSNFVLQAC---SNSDCDDS-------LTTEER 251
++W+ S WAT GKYK DY Y PFV +Y +F L +C + S C+ + L+ ++
Sbjct: 179 SVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQV 238
Query: 252 NKMKEFRSKYVTYSYCVDSKRYPIPLPEC 280
M+ + Y+ Y+YC D R PEC
Sbjct: 239 AAMEWVQKNYMVYNYCDDPTRDHTLTPEC 267
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 137/246 (55%), Gaps = 23/246 (9%)
Query: 55 GKSVRISLDEHTGCGFKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHDE 114
G +++ LD++TG GF+S+ +Y + FS +KL + +AG V FY S+ + HDE
Sbjct: 36 GNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGD-SAGTVTAFYLSSQN---SEHDE 91
Query: 115 LDFEFLGHANNGSWVLQTNLYGNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYV 174
+DFEFLG+ ++LQTN++ G RE+R L FDP++ FH YS+LW VF V
Sbjct: 92 IDFEFLGNRTGQPYILQTNVFTGGK--GDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLV 149
Query: 175 DYVPIRVTQKVEAMAGDYP-SKPMSLYATIWNGSDWATGGGKYKVDYAYAPFVSQYSNFV 233
D VPIRV + + + +P ++PM +Y+++WN DWAT GG K D++ APF++ Y +F
Sbjct: 150 DDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFH 209
Query: 234 LQACSNSDCDDSLTTE----------------ERNKMKEFRSKYVTYSYCVDSKRYPIPL 277
+ C S T+ + ++ R KY Y+YC D RYP
Sbjct: 210 IDGCEASVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWVRQKYTIYNYCTDRSRYPSMP 269
Query: 278 PECKND 283
PECK D
Sbjct: 270 PECKRD 275
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 70 FKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHDELDFEFLGHANNGSWV 129
++S + Y Y + S+K PA N G+V +F+T G + DE+D EFLG
Sbjct: 6 YRSTNIYGYGLYEVSMK-PAKN--TGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTT---K 59
Query: 130 LQTNLYGNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQKVEAMA 189
+Q N Y NG +G G E+ SL FD S+ FH Y+ W +YVD V K A A
Sbjct: 60 VQFNYYTNG-VG-GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV-----LKHTATA 112
Query: 190 GDYPSKPMSLYATIWNGS---DW 209
+ PS P + +WNG+ DW
Sbjct: 113 -NIPSTPGKIMMNLWNGTGVDDW 134
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 70 FKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHDELDFEFLGHANNGSWV 129
++S + Y Y + S+K PA N G+V +F+T G + DE+D EFLG
Sbjct: 6 YRSTNIYGYGLYEVSMK-PAKN--TGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTT---K 59
Query: 130 LQTNLYGNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQKVEAMA 189
+Q N Y NG +G G E+ SL FD S+ FH Y+ W +YVD V K A A
Sbjct: 60 VQFNYYTNG-VG-GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV-----LKHTATA 112
Query: 190 GDYPSKPMSLYATIWNGS---DW 209
+ PS P + +WNG+ DW
Sbjct: 113 -NIPSTPGKIMMNLWNGTGVDDW 134
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 70 FKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHDELDFEFLGHANNGSWV 129
++S + Y Y + S+K PA N G+V +F+T G + DE+D EFLG
Sbjct: 64 YRSTNIYGYGLYEVSMK-PAKN--TGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTT---K 117
Query: 130 LQTNLYGNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQKVEAMA 189
+Q N Y NG +G G E+ SL FD S+ FH Y+ W +YVD V K A A
Sbjct: 118 VQFNYYTNG-VG-GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV-----LKHTATA 170
Query: 190 GDYPSKPMSLYATIWNGS---DW 209
+ PS P + +WNG+ DW
Sbjct: 171 -NIPSTPGKIMMNLWNGTGVDDW 192
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 70 FKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHDELDFEFLGHANNGSWV 129
++S + Y Y + S+K PA N G+V +F+T G + DE+D EFLG
Sbjct: 62 YRSTNIYGYGLYEVSMK-PAKN--TGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTT---K 115
Query: 130 LQTNLYGNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQKVEAMA 189
+Q N Y NG +G G E+ SL FD S+ FH Y+ W +YVD V K A A
Sbjct: 116 VQFNYYTNG-VG-GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV-----LKHTATA 168
Query: 190 GDYPSKPMSLYATIWNGS---DW 209
+ PS P + +WNG+ DW
Sbjct: 169 -NIPSTPGKIMMNLWNGTGVDDW 190
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 70 FKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHDELDFEFLGHANNGSWV 129
++S + Y Y + S+K PA N G+V +F+T G + DE+D EFLG
Sbjct: 6 YRSTNIYGYGLYEVSMK-PAKN--TGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTT---K 59
Query: 130 LQTNLYGNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQKVEAMA 189
+Q N Y NG +G G E+ SL FD S+ FH Y+ W +YVD V K A A
Sbjct: 60 VQFNYYTNG-VG-GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV-----LKHTATA 112
Query: 190 GDYPSKPMSLYATIWNGS---DW 209
+ PS P + +WNG+ DW
Sbjct: 113 -NIPSTPGKIMMNLWNGTGVDDW 134
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 70 FKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHDELDFEFLGHANNGSWV 129
++S + Y Y + S+K PA N G+V +F+T G + D++D +FLG
Sbjct: 64 YRSTNIYGYGLYEVSMK-PAKN--TGIVSSFFTYTGPAHGTQWDQIDIQFLGKDTT---K 117
Query: 130 LQTNLYGNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQKVEAMA 189
+Q N Y NG +G G E+ SL FD S+ FH Y+ W +YVD V K A A
Sbjct: 118 VQFNYYTNG-VG-GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV-----LKHTATA 170
Query: 190 GDYPSKPMSLYATIWNGS---DW 209
+ PS P + +WNG+ DW
Sbjct: 171 -NIPSTPGKIMMNLWNGTGVDDW 192
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 58 VRISL-----DEHTGCGFKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSH 112
+R+SL ++ G G +S TY Y + ++K PA N G+V FYTS G
Sbjct: 34 MRLSLTSPSYNKFDGGGNQSVQTYGYGLYEVNMK-PAKN--VGIVSAFYTSTGPTDGTPW 90
Query: 113 DELDFEFLGHANNGSWVLQTNLYGNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVF 172
DE+D EFLG +Q N Y NG +G E+ +L FD + ++H Y+ W + +
Sbjct: 91 DEIDIEFLGKDTT---KVQFNYYTNG-VGN-HEKIVNLGFDAANSYHTYAFDWQPNSIKW 145
Query: 173 YVDYVPIRVTQKVEAMAGDYPSKPMSLYATIWNGS 207
YVD Q P P +Y ++W G+
Sbjct: 146 YVD------GQLKHTATTQIPQTPGKIYMSLWAGA 174
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 65 HTGCGFKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHDELDFEFLGHAN 124
+ G +++R + Y + +K PA N G+V +F+T G V+ DE+D EFLG
Sbjct: 79 YAGAEYRTRDKFGYGLYQVRMK-PAKN--PGIVSSFFTYTGPVHGTPWDEIDIEFLGKDT 135
Query: 125 NGSWVLQTNLYGNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQK 184
+Q N Y N + E Y L FD SE+FH Y+ W + VD ++
Sbjct: 136 T---KVQFNYYTNSA--GNHEYIYDLRFDASEDFHIYAFNWQPNYIAWLVD------GEE 184
Query: 185 VEAMAGDYPSKPMSLYATIWNG 206
V D P P + IW G
Sbjct: 185 VYRAYDDIPVHPGKIMLNIWPG 206
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 59/118 (50%), Gaps = 14/118 (11%)
Query: 95 GVVVTFYTSNGDVYKDSHDELDFEFLGHANNGSWVLQTNLYGNGSIGRGREERYSLPFDP 154
G+V +F+T G + DE+D EFLG +Q N Y NG +G G E+ SL FD
Sbjct: 3 GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTT---KVQFNYYTNG-VG-GHEKVISLGFDA 57
Query: 155 SENFHNYSILWTEKTTVFYVDYVPIRVTQKVEAMAGDYPSKPMSLYATIWNGS---DW 209
S+ FH Y+ W +YVD V K A A + PS P + +WNG+ DW
Sbjct: 58 SKGFHTYAFDWQPGYIKWYVDGV-----LKHTATA-NIPSTPGKIMMNLWNGTGVDDW 109
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 15/141 (10%)
Query: 68 CG-FKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHDELDFEFLGHANNG 126
CG +S TY Y + ++K PA N G+V +F+T G DE+D EFLG
Sbjct: 61 CGENRSVQTYGYGLYEVNMK-PAKN--VGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTT- 116
Query: 127 SWVLQTNLYGNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQKVE 186
+Q N Y NG +G E+ +L FD + ++H Y+ W + +YVD Q
Sbjct: 117 --KVQFNYYTNG-VGN-HEKIVNLGFDAANSYHTYAFDWQPNSIKWYVD------GQLKH 166
Query: 187 AMAGDYPSKPMSLYATIWNGS 207
P P + +WNG+
Sbjct: 167 TATTQIPQTPGKIMMNLWNGA 187
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 68 CG-FKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHDELDFEFLGHANNG 126
CG +S TY Y + +K PA N G+V +F+T G DE+D EFLG
Sbjct: 85 CGENRSVQTYGYGLYEVRMK-PAKN--TGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTT- 140
Query: 127 SWVLQTNLYGNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQKVE 186
+Q N Y NG+ E+ L FD + +H Y+ W + +YVD Q
Sbjct: 141 --KVQFNYYTNGA--GNHEKIVDLGFDAANAYHTYAFDWQPNSIKWYVD------GQLKH 190
Query: 187 AMAGDYPSKPMSLYATIWNGS 207
P+ P + +WNG+
Sbjct: 191 TATNQIPTTPGKIMMNLWNGT 211
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Query: 60 ISLDEHTGCGFKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHD--ELDF 117
+S+ + +G + YQY F +K+ AA+ T V F NG D E+D
Sbjct: 2 VSMKDFSGAELYTLEEYQYGKFEARMKMAAASGT--VSSMFLYQNGSEIADGRPWVEVDI 59
Query: 118 EFLGHANNGSWVLQTNLY-GNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDY 176
E LG + Q+N+ G + E+ +++ + FH Y + WT + VD
Sbjct: 60 EVLGKSPGS---FQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDG 116
Query: 177 VPIRVTQ 183
+R T+
Sbjct: 117 QEVRKTE 123
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 143 GREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQKVEAMAGDYPSKPMSLYAT 202
G E+ SL FD S+ FH Y+ W +YVD V K A A + PS P +
Sbjct: 3 GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV-----LKHTATA-NIPSTPGKIMMN 56
Query: 203 IWNGS---DW 209
+WNG+ DW
Sbjct: 57 LWNGTGVDDW 66
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 70 FKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHDELDFEFLGHANNGSWV 129
++S + Y Y + S+K PA N G+V +F+T G + DE+D EFLG
Sbjct: 152 YRSTNIYGYGLYEVSMK-PAKN--TGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTT---K 205
Query: 130 LQTNLYGNG 138
+Q N Y NG
Sbjct: 206 VQFNYYTNG 214
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 77 QYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHD--ELDFEFLGHANNGSWVLQTNL 134
QY F +K+ AA+ T V F NG D E+D E LG N GS Q+N+
Sbjct: 16 QYGKFEARMKMAAASGT--VSSMFLYQNGSEIADGRPWVEVDIEVLGK-NPGS--FQSNI 70
Query: 135 Y-GNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQ 183
G + E+ +++ + FH Y + WT + VD +R T+
Sbjct: 71 ITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKTE 120
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 77 QYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHD--ELDFEFLGHANNGSWVLQTNL 134
QY F +K+ AA+ T ++ + NG D E+D E LG N GS Q+N+
Sbjct: 17 QYGKFEARMKMAAASGTVSSMILY--QNGSEIADGRPWVEVDIEVLGK-NPGS--FQSNI 71
Query: 135 Y-GNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQ 183
G + E+ +++ + FH Y + WT + VD +R T+
Sbjct: 72 ITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKTE 121
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 60 ISLDEHTGCGFKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHD--ELDF 117
+S + +G + QY F K AA+ T V F NG D E+D
Sbjct: 2 VSAKDFSGAELYTLEEVQYGKFEARXKXAAASGT--VSSXFLYQNGSEIADGRPWVEVDI 59
Query: 118 EFLGHANNGSWVLQTNLY-GNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDY 176
E LG N GS Q+N+ G + E+ +++ + FH Y + WT + VD
Sbjct: 60 EVLGK-NPGS--FQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDG 116
Query: 177 VPIRVTQ 183
+R T+
Sbjct: 117 QEVRKTE 123
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 77 QYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHD--ELDFEFLGHANNGSWVLQTNL 134
QY F K AA+ T V F NG D E+D E LG N GS Q+N+
Sbjct: 16 QYGKFEARXKXAAASGT--VSSXFLYQNGSEIADGRPWVEVDIEVLGK-NPGS--FQSNI 70
Query: 135 Y-GNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQ 183
G + E+ +++ + FH Y + WT + VD +R T+
Sbjct: 71 ITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKTE 120
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 19/122 (15%)
Query: 71 KSRSTYQYAFFSTSVKLPAANYTAGVVVTFY---------TSNGDVYKDSHDELDFEFLG 121
KSR+T Y ++ +K A+ GV F+ T GDV D ++
Sbjct: 90 KSRATGNYGYYEARIK--GASTFPGVSPAFWXYSTIDRSLTKEGDVQYSEIDVVELTQKS 147
Query: 122 HANNGSWVLQTNLYGNG--------SIGRGREERYSLPFDPSENFHNYSILWTEKTTVFY 173
L + NG S + Y LPFDP +FH Y + T+ +Y
Sbjct: 148 AVRESDHDLHNIVVKNGKPTWXRPGSFPQTNHNGYHLPFDPRNDFHTYGVNVTKDKITWY 207
Query: 174 VD 175
VD
Sbjct: 208 VD 209
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 8/126 (6%)
Query: 61 SLDEHTGCGFKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHD--ELDFE 118
S + +G + QY F +K+ AA+ T V F NG D E+D E
Sbjct: 1 SAKDFSGAELYTLEEVQYGKFEARMKMAAASGT--VSSMFLYQNGSEIADGRPWVEVDIE 58
Query: 119 FLGHANNGSWVLQTNLY-GNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDYV 177
LG N GS Q+N+ G + + +++ + FH Y + WT + VD
Sbjct: 59 VLGK-NPGS--FQSNIITGKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQ 115
Query: 178 PIRVTQ 183
+R T+
Sbjct: 116 EVRKTE 121
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 114 ELDF-EFLGHANNGSWVLQTNLYGNGSIG-RGREERYSLPF---DPSENFHNYSILWTEK 168
E+D EFLGH + ++G G G +G Y+LP D +E+FH + I+W
Sbjct: 137 EIDIMEFLGHEPR---TIHGTVHGPGYSGSKGITRAYTLPEGVPDFTEDFHVFGIVWYPD 193
Query: 169 TTVFYVD--YVPIRVTQKVEAMA 189
+YVD + ++VEAM
Sbjct: 194 KIKWYVDGTFYHEVTKEQVEAMG 216
>pdb|3AZX|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZX|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZZ|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3B00|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B01|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
Length = 272
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Query: 77 QYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHDELD-FEFLGHANNGSW--VLQTN 133
+Y KLP + + G+V + E+D E LGH +
Sbjct: 95 KYGKIEIRAKLPKGKGIWPALWMLGNNIGEVGWPTCGEIDIMEMLGHDTRTVYGTAHGPG 154
Query: 134 LYGNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVD 175
G SIG +P D SE+FH +SI W E +YVD
Sbjct: 155 YSGGASIGVAYHLPEGVP-DFSEDFHIFSIEWDEDEVEWYVD 195
>pdb|4DFS|A Chain A, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
pdb|4DFS|B Chain B, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
Length = 267
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Query: 77 QYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHDELD-FEFLGHANNGSW--VLQTN 133
+Y KLP + + G+V + E+D E LGH +
Sbjct: 103 KYGKIEIRAKLPKGKGIWPALWMLGNNIGEVGWPTCGEIDIMEMLGHDTRTVYGTAHGPG 162
Query: 134 LYGNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVD 175
G SIG +P D SE+FH +SI W E +YVD
Sbjct: 163 YSGGASIGVAYHLPEGVP-DFSEDFHIFSIEWDEDEVEWYVD 203
>pdb|4AMC|A Chain A, Crystal Structure Of Lactobacillus Reuteri 121
N-Terminally Truncated Glucansucrase Gtfa
Length = 1049
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 14/82 (17%)
Query: 52 LKEGKSVRISLDEHTGCGFKSRSTYQYAFFSTSVKLPAANYTA--GVVVTFYTSNGDVYK 109
LK G + ++ L H G K++ Y+ A +T+ + NYT+ G V NGD+Y
Sbjct: 549 LKLGANDKVVL--HMGAAHKNQQ-YRAAVLTTTDGV--INYTSDQGAPVAMTDENGDLYL 603
Query: 110 DSH-------DELDFEFLGHAN 124
SH +E D G+AN
Sbjct: 604 SSHNLVVNGKEEADTAVQGYAN 625
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,105,994
Number of Sequences: 62578
Number of extensions: 400430
Number of successful extensions: 878
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 820
Number of HSP's gapped (non-prelim): 31
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)