Query 036126
Match_columns 285
No_of_seqs 294 out of 1565
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 1.5E-81 3.3E-86 578.4 33.4 269 3-285 2-291 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 2.8E-79 6.1E-84 559.2 32.0 243 33-280 3-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 5.5E-45 1.2E-49 322.8 25.7 177 44-238 14-202 (203)
4 cd02175 GH16_lichenase lichena 100.0 8.3E-39 1.8E-43 284.3 25.6 175 42-235 27-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 5.8E-36 1.3E-40 258.6 20.5 177 38-233 3-185 (185)
6 cd00413 Glyco_hydrolase_16 gly 100.0 2.6E-34 5.7E-39 252.6 24.1 176 42-235 25-210 (210)
7 cd02178 GH16_beta_agarase Beta 100.0 9.7E-33 2.1E-37 252.3 22.8 179 46-235 57-257 (258)
8 cd08023 GH16_laminarinase_like 100.0 1.2E-32 2.6E-37 247.4 22.9 181 43-235 34-235 (235)
9 cd02177 GH16_kappa_carrageenas 100.0 6.5E-30 1.4E-34 235.1 22.9 176 46-235 43-268 (269)
10 cd02180 GH16_fungal_KRE6_gluca 100.0 4.7E-30 1E-34 238.8 20.3 191 39-235 33-294 (295)
11 cd02182 GH16_Strep_laminarinas 100.0 2.7E-29 5.9E-34 229.7 21.7 185 44-235 43-258 (259)
12 cd08024 GH16_CCF Coelomic cyto 99.9 2.3E-26 5E-31 217.4 20.1 141 67-210 101-279 (330)
13 COG2273 SKN1 Beta-glucanase/Be 99.9 8.6E-26 1.9E-30 214.7 19.5 176 44-232 76-262 (355)
14 cd02179 GH16_beta_GRP beta-1,3 99.9 1.3E-25 2.8E-30 211.6 18.7 138 67-207 98-268 (321)
15 PF03935 SKN1: Beta-glucan syn 99.7 1.8E-15 3.9E-20 148.5 18.7 183 47-237 161-454 (504)
16 PF06955 XET_C: Xyloglucan end 99.6 8.2E-17 1.8E-21 112.6 2.9 35 246-280 16-51 (51)
17 cd02181 GH16_fungal_Lam16A_glu 99.5 2.3E-13 5.1E-18 126.1 12.7 147 53-210 47-251 (293)
18 PF13385 Laminin_G_3: Concanav 95.0 1.1 2.4E-05 35.6 13.4 74 154-252 83-157 (157)
19 smart00560 LamGL LamG-like jel 91.2 7 0.00015 31.7 14.6 68 154-238 59-129 (133)
20 PF06439 DUF1080: Domain of Un 88.9 8.1 0.00018 32.5 11.4 108 66-185 42-156 (185)
21 PF09264 Sial-lect-inser: Vibr 88.6 0.85 1.8E-05 40.2 4.9 28 156-183 92-121 (198)
22 smart00210 TSPN Thrombospondin 85.0 19 0.00041 31.1 11.5 30 154-183 115-144 (184)
23 cd00152 PTX Pentraxins are pla 84.1 28 0.0006 30.4 17.4 85 154-255 88-174 (201)
24 KOG1834 Calsyntenin [Extracell 82.9 7.9 0.00017 40.3 9.2 53 154-210 440-492 (952)
25 PF10287 DUF2401: Putative TOS 82.0 6.7 0.00015 35.8 7.6 82 81-168 103-207 (235)
26 smart00159 PTX Pentraxin / C-r 80.8 38 0.00083 29.7 18.2 86 154-256 88-175 (206)
27 PF07172 GRP: Glycine rich pro 74.9 1.9 4.1E-05 33.9 1.7 18 1-20 1-18 (95)
28 PF14099 Polysacc_lyase: Polys 74.4 59 0.0013 28.4 11.8 74 149-234 145-224 (224)
29 cd00110 LamG Laminin G domain; 71.7 49 0.0011 26.3 15.6 85 78-182 21-106 (151)
30 PF02210 Laminin_G_2: Laminin 65.2 60 0.0013 24.8 9.5 76 154-236 52-127 (128)
31 PF02973 Sialidase: Sialidase, 54.3 1.6E+02 0.0034 26.1 15.2 142 76-254 32-185 (190)
32 PF09224 DUF1961: Domain of un 51.1 68 0.0015 29.0 7.1 59 156-234 159-218 (218)
33 KOG1691 emp24/gp25L/p24 family 45.0 1.8E+02 0.0039 26.2 8.8 59 57-121 61-120 (210)
34 PF00354 Pentaxin: Pentaxin fa 34.6 3.1E+02 0.0068 23.9 10.2 86 154-256 82-169 (195)
35 smart00282 LamG Laminin G doma 30.7 2.6E+02 0.0057 21.8 14.8 28 155-182 61-88 (135)
36 cd06526 metazoan_ACD Alpha-cry 29.7 1.2E+02 0.0026 22.3 4.7 43 44-89 18-60 (83)
37 PF06832 BiPBP_C: Penicillin-B 28.8 67 0.0015 24.1 3.1 35 169-205 44-79 (89)
38 PF12248 Methyltransf_FA: Farn 24.9 3.3E+02 0.0071 21.0 7.1 46 154-205 50-97 (102)
39 COG3354 FlaG Putative archaeal 24.3 95 0.002 26.5 3.4 66 1-68 1-81 (154)
40 cd06482 ACD_HspB10 Alpha cryst 24.1 1.4E+02 0.0031 22.8 4.2 45 45-89 20-64 (87)
41 cd00070 GLECT Galectin/galacto 21.3 2.8E+02 0.006 22.1 5.6 42 142-184 63-105 (127)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=1.5e-81 Score=578.35 Aligned_cols=269 Identities=35% Similarity=0.704 Sum_probs=246.7
Q ss_pred cchhHHHHHHHHHHHhhhccccccccCCcccccccccccccccCCCeEEecCCcEEEEEEeCCCCceeEEeeeeEeEEEE
Q 036126 3 ASFKELILCLFFMTSVVLFIPAYSLSKKFTTSYFDEAFSRLYGDQNLIVLKEGKSVRISLDEHTGCGFKSRSTYQYAFFS 82 (285)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~w~~~~v~~~~~G~~l~L~l~~~sga~i~Sk~~f~YG~fE 82 (285)
||.|.|++.|++++.++.+ +....+|.++|.++|+.+|+.+.++|..|+|+|++.+|++|+||+.|+||+||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~--------~~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E 73 (291)
T PLN03161 2 ASLKTLLVALFAALAAFDR--------SFVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIE 73 (291)
T ss_pred hhHHHHHHHHHHHHHhcCC--------CcccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEE
Confidence 5677777777776666665 45678899999999999999998888889999999999999999999999999
Q ss_pred EEEEeccCCCCCceEEEEEeeeCCCCCCCCCeeeEEEeCCCCCCccEEEEeEeeCCccCCCCceEEeCCCCCCCCcEEEE
Q 036126 83 TSVKLPAANYTAGVVVTFYTSNGDVYKDSHDELDFEFLGHANNGSWVLQTNLYGNGSIGRGREERYSLPFDPSENFHNYS 162 (285)
Q Consensus 83 ariKlp~~~~~~G~v~AFwl~s~~~~~~~~dEID~E~lG~~~g~p~~~qtN~~~~G~~~~~~~~~~~l~~d~~~dfHtY~ 162 (285)
||||||+ ++++|+||||||++.+ +.+|||||||||+++++|+++|||+|.+|. +.+++++.++|||+++||+|+
T Consensus 74 ~riKLp~-G~saG~v~AFwl~s~~---~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~--g~re~~~~l~fDpt~dFHtYs 147 (291)
T PLN03161 74 MLIKLVP-GNSAGTVTAYYLSSTG---SRHDEIDFEFLGNVSGQPYTIHTNIYTQGN--GSREQQFRPWFDPTADFHNYT 147 (291)
T ss_pred EEEEeCC-CCCCCeEEEEEecCCC---CCCCeEEEEecCCCCCCceEEEeceEeCCc--CCcceeccccCCCccCcEEEE
Confidence 9999998 7789999999999863 579999999999999999999999999987 678999999999999999999
Q ss_pred EEEcCCeEEEEEcCeeEEEEeccccccCCCC-CCceEEEEEeecCCCCCCCCCcccccCCCCCEEEEEeEEEEEeecc--
Q 036126 163 ILWTEKTTVFYVDYVPIRVTQKVEAMAGDYP-SKPMSLYATIWNGSDWATGGGKYKVDYAYAPFVSQYSNFVLQACSN-- 239 (285)
Q Consensus 163 i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~i~lnlW~gg~Wat~GG~~~~d~~~~Pf~~~~~~v~v~~c~~-- 239 (285)
|+|+|++|+|||||++||++++.+..|.+|| .+||+|++|||+|++|||+||+++|||+++||+|.|++|++.||.+
T Consensus 148 I~Wtp~~I~wyVDG~~iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~ 227 (291)
T PLN03161 148 IHWNPSEVVWYVDGTPIRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNG 227 (291)
T ss_pred EEEchhhEEEEECCEEEEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCC
Confidence 9999999999999999999998777778999 5899999999999999999999999999999999999999999975
Q ss_pred ----CccC-------------CCCCHHHHHHHHHHHhCCeeeecccCCCCCCC-CCCCCCCCCC
Q 036126 240 ----SDCD-------------DSLTTEERNKMKEFRSKYVTYSYCVDSKRYPI-PLPECKNDSF 285 (285)
Q Consensus 240 ----~~c~-------------~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~-~~~ec~~~~~ 285 (285)
..|. ++|+++|+++|+|||+||||||||+|++|||. +||||.++.|
T Consensus 228 ~~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~~~ 291 (291)
T PLN03161 228 PVSIKQCADPTPSNWWTSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFKPQF 291 (291)
T ss_pred CCCccccCCCCccccccCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCCCcC
Confidence 1473 26999999999999999999999999999998 8999999876
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=2.8e-79 Score=559.18 Aligned_cols=243 Identities=48% Similarity=0.941 Sum_probs=228.9
Q ss_pred cccccccccccccCCCeEEecCCcEEEEEEeCCCCceeEEeeeeEeEEEEEEEEeccCCCCCceEEEEEeeeCCCCCCCC
Q 036126 33 TSYFDEAFSRLYGDQNLIVLKEGKSVRISLDEHTGCGFKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSH 112 (285)
Q Consensus 33 ~~~f~~~~~~~w~~~~v~~~~~G~~l~L~l~~~sga~i~Sk~~f~YG~fEariKlp~~~~~~G~v~AFwl~s~~~~~~~~ 112 (285)
..+|.++|..+|+++||+++++|+.|+|+||+.+|++|+|+..|+||+||||||||+ ++++|+||||||++++ |+.+
T Consensus 3 ~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~-g~s~G~~pAFwl~~~~--wp~~ 79 (263)
T cd02176 3 AASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPP-GDSAGTVTAFYLSSQG--PDNH 79 (263)
T ss_pred cCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCC-CCCCCeEEEEEECCCC--CCCC
Confidence 467999999999999999998889999999999999999999999999999999999 6679999999999986 6889
Q ss_pred CeeeEEEeCCCCCCccEEEEeEeeCCccCCCCceEEeCCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccccCCC
Q 036126 113 DELDFEFLGHANNGSWVLQTNLYGNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQKVEAMAGDY 192 (285)
Q Consensus 113 dEID~E~lG~~~g~p~~~qtN~~~~G~~~~~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~ 192 (285)
+|||||+||+.+|+|+++|||+|.+|. +++++++.++|||+++||+|+|+|+|++|+|||||++||++++.+..|.+|
T Consensus 80 ~EID~E~lGn~~g~~~~~qtnv~~~g~--g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~ 157 (263)
T cd02176 80 DEIDFEFLGNVTGQPYTLQTNVFANGV--GGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPY 157 (263)
T ss_pred CeEEEEEecccCCCceEEEEEEeCCCC--CCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCC
Confidence 999999999999999999999999887 668889999999999999999999999999999999999999987777899
Q ss_pred C-CCceEEEEEeecCCCCCCCCCcccccCCCCCEEEEEeEEEEEeecc----CccC-------------CCCCHHHHHHH
Q 036126 193 P-SKPMSLYATIWNGSDWATGGGKYKVDYAYAPFVSQYSNFVLQACSN----SDCD-------------DSLTTEERNKM 254 (285)
Q Consensus 193 P-~~Pm~i~lnlW~gg~Wat~GG~~~~d~~~~Pf~~~~~~v~v~~c~~----~~c~-------------~~l~~~~~~~~ 254 (285)
| ++||+|++|+|+||+|||+||++++||+++||+|.|++|+|.||.+ ..|. ++|+++|+++|
T Consensus 158 P~~~Pm~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 237 (263)
T cd02176 158 PSSQPMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSCTEDWWNGSTYQQLSANQQRAM 237 (263)
T ss_pred CccceEEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCCccccCCCccccccccccccCCHHHHHHH
Confidence 9 5999999999999999999999999999999999999999999986 2231 47999999999
Q ss_pred HHHHhCCeeeecccCCCCCCCCCCCC
Q 036126 255 KEFRSKYVTYSYCVDSKRYPIPLPEC 280 (285)
Q Consensus 255 ~~~~~~~~~y~yc~d~~r~~~~~~ec 280 (285)
+|||+|||+||||+|++|||.+||||
T Consensus 238 ~~~~~~~~~y~yC~d~~r~~~~p~ec 263 (263)
T cd02176 238 EWVRRNYMVYDYCDDRKRYPVPPPEC 263 (263)
T ss_pred HHHHHCCEEEecCCCCCcCCCCcCCC
Confidence 99999999999999999999999999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=5.5e-45 Score=322.79 Aligned_cols=177 Identities=27% Similarity=0.487 Sum_probs=153.9
Q ss_pred ccCCCeEEecCCcEEEEEEeCC-CCceeEEeeeeEeEEEEEEEEeccCCCCCceEEEEEeeeCCCCCCCCCeeeEEEeCC
Q 036126 44 YGDQNLIVLKEGKSVRISLDEH-TGCGFKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHDELDFEFLGH 122 (285)
Q Consensus 44 w~~~~v~~~~~G~~l~L~l~~~-sga~i~Sk~~f~YG~fEariKlp~~~~~~G~v~AFwl~s~~~~~~~~dEID~E~lG~ 122 (285)
...++|.++.+ +|+|+|++. ++++|.|++.|+||+||||||+|. ++|+||||||+++ .++|||||++|+
T Consensus 14 ~~~~~~~~~~~--~~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~---g~G~wpAfWl~~~-----~~gEIDIE~~G~ 83 (203)
T cd02183 14 VTSGTVDYDDD--GASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAP---GQGIVSSFVLQSD-----DLDEIDWEWVGG 83 (203)
T ss_pred ecCCcEeECCC--eEEEEEcCCCCCCeEEeccEEEeEEEEEEEEecC---CCeEEEEEEEECC-----CCCEEEEEecCC
Confidence 35678888743 599999988 799999999999999999999999 8999999999986 369999999996
Q ss_pred CCCCccEEEEeEeeCCcc-CCCCceEEeCCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEecccc-ccCCCCCCceEEE
Q 036126 123 ANNGSWVLQTNLYGNGSI-GRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQKVEA-MAGDYPSKPMSLY 200 (285)
Q Consensus 123 ~~g~p~~~qtN~~~~G~~-~~~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~-~g~~~P~~Pm~i~ 200 (285)
++..+|+|++.+|.. ...+.+.+.++++++++||+|+|+|+|++|+|||||+++|++++.+. .+..||++||+|+
T Consensus 84 ---~~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~~P~~l~ 160 (203)
T cd02183 84 ---DLTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQTPMRLQ 160 (203)
T ss_pred ---CCCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCCCCcEEE
Confidence 456899999987753 23455677788888899999999999999999999999999987543 2467999999999
Q ss_pred EEeecCCC---------CCCCCCcccccCCCCCEEEEEeEEEEEeec
Q 036126 201 ATIWNGSD---------WATGGGKYKVDYAYAPFVSQYSNFVLQACS 238 (285)
Q Consensus 201 lnlW~gg~---------Wat~GG~~~~d~~~~Pf~~~~~~v~v~~c~ 238 (285)
+|+|.||+ || || ++||+.+||+|.|++|+|+ |.
T Consensus 161 ln~W~gg~~~~~~g~~~Wa--Gg--~~d~~~~P~~~~vd~v~v~-~~ 202 (203)
T cd02183 161 IGIWAGGDPSNAPGTIEWA--GG--ETDYDKGPFTMYVKSVTVT-DY 202 (203)
T ss_pred EEEecCCCccccCCcccCC--CC--ccCCCCCCEEEEEEEEEEE-eC
Confidence 99999985 99 77 5899999999999999998 53
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=8.3e-39 Score=284.29 Aligned_cols=175 Identities=29% Similarity=0.567 Sum_probs=148.1
Q ss_pred ccccCCCeEEecCCcEEEEEEeCC-------CCceeEEeeeeEeEEEEEEEEeccCCCCCceEEEEEeeeCCCCCCCCCe
Q 036126 42 RLYGDQNLIVLKEGKSVRISLDEH-------TGCGFKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHDE 114 (285)
Q Consensus 42 ~~w~~~~v~~~~~G~~l~L~l~~~-------sga~i~Sk~~f~YG~fEariKlp~~~~~~G~v~AFwl~s~~~~~~~~dE 114 (285)
-.|.++||.+.+ | .|.|++.+. ++++|.|+.+|+||+||+|||+|. ++|+||||||++.+..++.++|
T Consensus 27 ~~~~~~nv~v~~-g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~---~~G~~~Afwl~~~~~~~~~~~E 101 (212)
T cd02175 27 CTWSADNVEFSD-G-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAK---GSGVVSSFFTYTGPYDGDPHDE 101 (212)
T ss_pred eeEccccEEEEC-C-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCC---CCeEEEEEEEEecCCCCCCCCE
Confidence 357789999974 4 688888754 378999999999999999999998 8999999999986433345799
Q ss_pred eeEEEeCCCCCCccEEEEeEeeCCccCCCCceEEeCCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccccCCCCC
Q 036126 115 LDFEFLGHANNGSWVLQTNLYGNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQKVEAMAGDYPS 194 (285)
Q Consensus 115 ID~E~lG~~~g~p~~~qtN~~~~G~~~~~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~ 194 (285)
||||++|++. ..+++|+|.+|. ..+...+.++++++++||+|+|+|+|++|+|||||+++++++..+ ..+|+
T Consensus 102 IDiE~~g~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p~ 173 (212)
T cd02175 102 IDIEFLGKDT---TKVQFNYYTNGV--GGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIPD 173 (212)
T ss_pred EEEEEccCCC---CEeEEEEECCCC--CCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCCC
Confidence 9999999753 468999998766 345566677889999999999999999999999999999998753 36899
Q ss_pred CceEEEEEeecCC---CCCCCCCcccccCCCCCEEEEEeEEEEE
Q 036126 195 KPMSLYATIWNGS---DWATGGGKYKVDYAYAPFVSQYSNFVLQ 235 (285)
Q Consensus 195 ~Pm~i~lnlW~gg---~Wat~GG~~~~d~~~~Pf~~~~~~v~v~ 235 (285)
+||+|++|+|.|+ +|+ | ++|. .+|++|+||+|||+
T Consensus 174 ~p~~i~~n~w~~~~~~~W~---G--~~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 174 TPGKIMMNLWPGDGVDDWL---G--PFDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred CCcEEEEEEEcCCCCCCcC---C--cCCC-CCCeEEEEEEEEEe
Confidence 9999999999985 598 5 3677 88999999999986
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=5.8e-36 Score=258.58 Aligned_cols=177 Identities=29% Similarity=0.516 Sum_probs=149.4
Q ss_pred ccccccccCCCeEEecCCcEEEEEEeC-----CCCceeEEeeeeEeEEEEEEEEeccCCCCCceEEEEEeeeCCCCCCCC
Q 036126 38 EAFSRLYGDQNLIVLKEGKSVRISLDE-----HTGCGFKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSH 112 (285)
Q Consensus 38 ~~~~~~w~~~~v~~~~~G~~l~L~l~~-----~sga~i~Sk~~f~YG~fEariKlp~~~~~~G~v~AFwl~s~~~~~~~~ 112 (285)
+.+...|+++||.+.++ ..|.|++++ .++++|.|+..++||+||+|||++. +.|+||||||.+.+. ++.+
T Consensus 3 ~~~~~~~~~~nv~~~~g-~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~---~~G~~~afwl~~~~~-~~~~ 77 (185)
T PF00722_consen 3 DQYNCTWSPDNVTVEDG-GNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPP---GPGVWPAFWLTGADG-WPDG 77 (185)
T ss_dssp CTEEEEETCCGEEEETT-SEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSC---STTEEEEEEEETTGS-TTTT
T ss_pred CceEEeeCCCcEEEcCC-CEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecC---CCceEeccccccccc-ccch
Confidence 45677899999999865 479999988 5789999999999999999999988 899999999975434 7889
Q ss_pred CeeeEEEeCCCCCCccEEEEeEeeCCccCCCCceEEeCCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccccCCC
Q 036126 113 DELDFEFLGHANNGSWVLQTNLYGNGSIGRGREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQKVEAMAGDY 192 (285)
Q Consensus 113 dEID~E~lG~~~g~p~~~qtN~~~~G~~~~~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~ 192 (285)
+|||||++|+++. .+++|+|..|........++.+..++.++||+|+|+|+|++|+|||||++++++......+.++
T Consensus 78 ~EIDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~ 154 (185)
T PF00722_consen 78 GEIDIEFLGNDPT---QVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPY 154 (185)
T ss_dssp EEEEEEEETTSTT---EEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCS
T ss_pred hhhhhhhcccccc---ceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccC
Confidence 9999999998544 6999999887732112566777889999999999999999999999999999999876544468
Q ss_pred CC-CceEEEEEeecCCCCCCCCCcccccCCCCCEEEEEeEEE
Q 036126 193 PS-KPMSLYATIWNGSDWATGGGKYKVDYAYAPFVSQYSNFV 233 (285)
Q Consensus 193 P~-~Pm~i~lnlW~gg~Wat~GG~~~~d~~~~Pf~~~~~~v~ 233 (285)
|. .||+|.+++|.+++|++..| .|+|||||
T Consensus 155 P~~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 155 PFSTPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp SEEEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred cccceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 96 99999999999999985444 67777776
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=2.6e-34 Score=252.63 Aligned_cols=176 Identities=28% Similarity=0.511 Sum_probs=145.9
Q ss_pred ccccCCCeEEecCCcEEEEEEeCC------CCceeEE-eeeeEeEEEEEEEEeccCCCCCceEEEEEeeeCCCCCCCCCe
Q 036126 42 RLYGDQNLIVLKEGKSVRISLDEH------TGCGFKS-RSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHDE 114 (285)
Q Consensus 42 ~~w~~~~v~~~~~G~~l~L~l~~~------sga~i~S-k~~f~YG~fEariKlp~~~~~~G~v~AFwl~s~~~~~~~~dE 114 (285)
..|.++||.+.++| .|.|++.+. ++++|.| ++.|+||+||+|||++. +.|+|+||||++.+..++..+|
T Consensus 25 ~~~~~~nv~~~~~G-~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~---~~G~~~afw~~~~~~~~~~~~E 100 (210)
T cd00413 25 MTNSPNNVYVENDG-GLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAG---GPGAVSAFWTYSDDDDPPDGGE 100 (210)
T ss_pred EEECccCEEEeCCC-eEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCC---CCceEEEEEEeCCCCCCCCCCe
Confidence 46788999998646 688888654 4689999 99999999999999999 7999999999998644567999
Q ss_pred eeEEEeCCCCCCccEEEEeEeeCCccC---CCCceEEeCCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccccCC
Q 036126 115 LDFEFLGHANNGSWVLQTNLYGNGSIG---RGREERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQKVEAMAGD 191 (285)
Q Consensus 115 ID~E~lG~~~g~p~~~qtN~~~~G~~~---~~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~ 191 (285)
||||++|++ +..+++++|..+... ......+.+++++.++||+|+|+|+|+.|+|||||++++++.+ .
T Consensus 101 IDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~------~ 171 (210)
T cd00413 101 IDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITN------Q 171 (210)
T ss_pred EEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECC------C
Confidence 999999875 346888888655421 2334445666778999999999999999999999999999975 3
Q ss_pred CCCCceEEEEEeecCCCCCCCCCcccccCCCCCEEEEEeEEEEE
Q 036126 192 YPSKPMSLYATIWNGSDWATGGGKYKVDYAYAPFVSQYSNFVLQ 235 (285)
Q Consensus 192 ~P~~Pm~i~lnlW~gg~Wat~GG~~~~d~~~~Pf~~~~~~v~v~ 235 (285)
+|++||+|+||+|.+++|++ . .+....|..|+|++|||.
T Consensus 172 ~p~~p~~i~ln~~~~~~~~~--~---~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 172 VPDDPMNIILNLWSDGGWWW--G---GPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred CCCCCcEEEEEEEECCCCcc--c---CCCCCCCcEEEEEEEEEC
Confidence 88999999999999999872 2 356788999999999983
No 7
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=9.7e-33 Score=252.32 Aligned_cols=179 Identities=19% Similarity=0.258 Sum_probs=134.8
Q ss_pred CCCeEEecCCcEEEEEEeCCC-----------CceeEEeeeeEeEEEEEEEEeccCCCCCceEEEEEeeeCCCCCCCCCe
Q 036126 46 DQNLIVLKEGKSVRISLDEHT-----------GCGFKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHDE 114 (285)
Q Consensus 46 ~~~v~~~~~G~~l~L~l~~~s-----------ga~i~Sk~~f~YG~fEariKlp~~~~~~G~v~AFwl~s~~~~~~~~dE 114 (285)
++||.+. +| .|.|+..+.. +++|.|++.|+||+||||||+|. +. .+|||||++.+ ++.++|
T Consensus 57 ~~nv~v~-~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~---~~-~~pAfW~~~~~--~~~~gE 128 (258)
T cd02178 57 ADNVSVE-DG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASN---LP-MSSAFWLLSDT--KDSTTE 128 (258)
T ss_pred cCCeEEE-CC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCC---CC-ccceEEEccCC--CCCCCc
Confidence 4677776 45 6888886543 57899999999999999999998 54 47999999976 568999
Q ss_pred ee-EEEeCCCC--CCccEEEEeEeeCCc--cCC-CC---ceEEeCCCCCCCCcEEEEEEEc-CCeEEEEEcCeeEEEEec
Q 036126 115 LD-FEFLGHAN--NGSWVLQTNLYGNGS--IGR-GR---EERYSLPFDPSENFHNYSILWT-EKTTVFYVDYVPIRVTQK 184 (285)
Q Consensus 115 ID-~E~lG~~~--g~p~~~qtN~~~~G~--~~~-~~---~~~~~l~~d~~~dfHtY~i~Wt-p~~I~fyVDG~~vr~~~~ 184 (285)
|| ||++|+.. ..+..+|+++|..+. ..+ .+ ...+..+++.+++||+|+|+|+ |++|+|||||++++++++
T Consensus 129 IDI~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~ 208 (258)
T cd02178 129 IDILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVEN 208 (258)
T ss_pred EEhhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcC
Confidence 99 79999763 224568888653221 111 11 2334456677899999999999 999999999999999987
Q ss_pred cccccCCCC-CCceEEEEEeecCCCCCCCCCcccccCCCCCEEEEEeEEEEE
Q 036126 185 VEAMAGDYP-SKPMSLYATIWNGSDWATGGGKYKVDYAYAPFVSQYSNFVLQ 235 (285)
Q Consensus 185 ~~~~g~~~P-~~Pm~i~lnlW~gg~Wat~GG~~~~d~~~~Pf~~~~~~v~v~ 235 (285)
.+.. ..+| ++||+|+||++.|| |++..+. ...-...|..|+||+|||.
T Consensus 209 ~~~~-~~~~f~~p~~liln~avg~-w~g~~~~-~~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 209 SEIT-DGTGFDQPMYIIIDTETYD-WRGEPTD-EELADDSKNTFYVDYVRVY 257 (258)
T ss_pred cccC-cCCcCCCCeEEEEEecccc-CCCCCCc-cccCCCCCCeEEEEEEEEe
Confidence 5432 3455 99999999999998 9832121 1122346999999999996
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=1.2e-32 Score=247.40 Aligned_cols=181 Identities=23% Similarity=0.426 Sum_probs=143.0
Q ss_pred cccCCCeEEecCCcEEEEEEeCC----------CCceeEE--eeeeEeEEEEEEEEeccCCCCCceEEEEEeeeCCCC--
Q 036126 43 LYGDQNLIVLKEGKSVRISLDEH----------TGCGFKS--RSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVY-- 108 (285)
Q Consensus 43 ~w~~~~v~~~~~G~~l~L~l~~~----------sga~i~S--k~~f~YG~fEariKlp~~~~~~G~v~AFwl~s~~~~-- 108 (285)
.+.++||.+. +| .|.|+..+. ++++|.| ++.|+||+||||||+|. +.|++|||||++.+..
T Consensus 34 ~~~~~nv~v~-~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~---~~G~~pafWl~~~~~~~~ 108 (235)
T cd08023 34 TYRPENAYVE-DG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPK---GQGTWPAFWMLGENIKYV 108 (235)
T ss_pred eCCCCCeEEE-CC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccC---CCCceeEEEEcCCCCCCC
Confidence 4577899986 45 688877543 2568899 77899999999999999 7999999999997642
Q ss_pred -CCCCCeee-EEEeCCCCCCccEEEEeEeeCCcc--CCCCceEEeCCC-CCCCCcEEEEEEEcCCeEEEEEcCeeEEEEe
Q 036126 109 -KDSHDELD-FEFLGHANNGSWVLQTNLYGNGSI--GRGREERYSLPF-DPSENFHNYSILWTEKTTVFYVDYVPIRVTQ 183 (285)
Q Consensus 109 -~~~~dEID-~E~lG~~~g~p~~~qtN~~~~G~~--~~~~~~~~~l~~-d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 183 (285)
|+..+||| ||++|+. |..+++++|..+.. .......+.+.. +..++||+|+++|+|++|+|||||+++++++
T Consensus 109 ~w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~ 185 (235)
T cd08023 109 GWPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYT 185 (235)
T ss_pred CCCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEc
Confidence 57789999 6999975 34688888866542 123344555554 6899999999999999999999999999998
Q ss_pred cccccc-CCCC-CCceEEEEEeecCCCCCCCCCcccccCCCCCEEEEEeEEEEE
Q 036126 184 KVEAMA-GDYP-SKPMSLYATIWNGSDWATGGGKYKVDYAYAPFVSQYSNFVLQ 235 (285)
Q Consensus 184 ~~~~~g-~~~P-~~Pm~i~lnlW~gg~Wat~GG~~~~d~~~~Pf~~~~~~v~v~ 235 (285)
+....+ ..+| ++||+|+||+|.+|+|+ |. ...-...|..|.||+|||+
T Consensus 186 ~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~-~~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 186 NPNTDNGGQWPFDQPFYLILNLAVGGNWP---GP-PDDDTPFPATMEVDYVRVY 235 (235)
T ss_pred ccccCCcccCCCCCCcEEEEEEEEcCCCC---CC-CCCCCCCCCEEEEEEEEEC
Confidence 754321 2344 89999999999999998 42 1345678999999999984
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.97 E-value=6.5e-30 Score=235.12 Aligned_cols=176 Identities=20% Similarity=0.285 Sum_probs=129.8
Q ss_pred CCCeEEecCCcEEEEEEeCC-------------------CCceeEEeeeeEeEEEEEEEEeccCCCCCceEEEEEeeeCC
Q 036126 46 DQNLIVLKEGKSVRISLDEH-------------------TGCGFKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGD 106 (285)
Q Consensus 46 ~~~v~~~~~G~~l~L~l~~~-------------------sga~i~Sk~~f~YG~fEariKlp~~~~~~G~v~AFwl~s~~ 106 (285)
++||.+. +| .|.|+..+. +++.+.|+.+|+|||||||||+++ . ++|+||||||+++.
T Consensus 43 ~~Nv~v~-dG-~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p-~-~~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVIS-NG-ILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGAD-I-FPGVCPSFWLYSDI 118 (269)
T ss_pred ccceEEe-CC-EEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCC-C-CCceEeEEEEeccC
Confidence 4678775 56 688887653 457888999999999999999865 2 78999999999852
Q ss_pred C------CCCCCCeee-EEEeCCC---CCCcc----EEEEeEeeCCccCC--------CCceEEeCCCCCCCCcEEEEEE
Q 036126 107 V------YKDSHDELD-FEFLGHA---NNGSW----VLQTNLYGNGSIGR--------GREERYSLPFDPSENFHNYSIL 164 (285)
Q Consensus 107 ~------~~~~~dEID-~E~lG~~---~g~p~----~~qtN~~~~G~~~~--------~~~~~~~l~~d~~~dfHtY~i~ 164 (285)
. .|+.++||| ||.+|.. .+++. .+|++++.+|.... .....+.+++|++++||+|+|+
T Consensus 119 ~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~ 198 (269)
T cd02177 119 DYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCN 198 (269)
T ss_pred CCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEE
Confidence 1 268899999 6777643 12233 35555544543210 1122456778899999999999
Q ss_pred EcCCeEEEEEcCeeEEEEeccccccCCCCCCceEEEEEeecCC---------CCCCCCCcccccCCCCCEEEEEeEEEEE
Q 036126 165 WTEKTTVFYVDYVPIRVTQKVEAMAGDYPSKPMSLYATIWNGS---------DWATGGGKYKVDYAYAPFVSQYSNFVLQ 235 (285)
Q Consensus 165 Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~i~lnlW~gg---------~Wat~GG~~~~d~~~~Pf~~~~~~v~v~ 235 (285)
|+|++|+|||||++++++.+ .+..+||.|.+++-.+. .|+ |+ ..+-+.+|-.|+||+|||.
T Consensus 199 W~~~~i~~yvDg~~~~~~~~------~~w~~~~~~~~~~~~~~p~~~~~~~~~~~--~~--~~~~~~fP~~m~VDyVRv~ 268 (269)
T cd02177 199 VNQDEIIWYVDGVEVGRKPN------KYWHRPMNVTLSLGLRKPFVKFFDNKNNA--KA--REKASDFPTSMYVDYVRVW 268 (269)
T ss_pred EeCCEEEEEECCEEEEEEcC------CccccccEEeeccccCcchhhhhccccCC--CC--CCccCcCCceEEEEEEEEe
Confidence 99999999999999999974 35578898888874432 355 33 3456789999999999995
No 10
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.97 E-value=4.7e-30 Score=238.80 Aligned_cols=191 Identities=17% Similarity=0.196 Sum_probs=130.6
Q ss_pred cccccccCCCeEEecCCcEEEEEEeCC-------CCceeEE--eeeeEeEEEEEEEEeccCCCCCceEEEEEeeeCCC--
Q 036126 39 AFSRLYGDQNLIVLKEGKSVRISLDEH-------TGCGFKS--RSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDV-- 107 (285)
Q Consensus 39 ~~~~~w~~~~v~~~~~G~~l~L~l~~~-------sga~i~S--k~~f~YG~fEariKlp~~~~~~G~v~AFwl~s~~~-- 107 (285)
+....+.++|+.+. +| .|.|+..+. +.++|.| |..|+||+||||||||....+.|+||||||+++..
T Consensus 33 ~e~q~Y~~~nv~v~-~G-~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~ 110 (295)
T cd02180 33 NDLEWYDPDAVTTI-NG-SLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRP 110 (295)
T ss_pred CCeEEecCcCeEec-CC-eEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeecccccccc
Confidence 33345667888886 45 688887653 4678888 56789999999999997213589999999998531
Q ss_pred --------CCCC------CCeee-EEEeCCCCC-CccE---EEE----------------eEeeC-----CccCCCCceE
Q 036126 108 --------YKDS------HDELD-FEFLGHANN-GSWV---LQT----------------NLYGN-----GSIGRGREER 147 (285)
Q Consensus 108 --------~~~~------~dEID-~E~lG~~~g-~p~~---~qt----------------N~~~~-----G~~~~~~~~~ 147 (285)
.||. .+||| ||.+|.+.. .... +|. .+|.. +...++..++
T Consensus 111 ~~~~~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 190 (295)
T cd02180 111 GYLATTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQ 190 (295)
T ss_pred cccccccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCcccc
Confidence 2564 49999 899985431 1111 111 11210 0000111110
Q ss_pred -E----eCCC----CCCCCcEEEEEEEcC-----CeEEEEEcCeeEEEEecccccc------CCCCCCceEEEEEeecCC
Q 036126 148 -Y----SLPF----DPSENFHNYSILWTE-----KTTVFYVDYVPIRVTQKVEAMA------GDYPSKPMSLYATIWNGS 207 (285)
Q Consensus 148 -~----~l~~----d~~~dfHtY~i~Wtp-----~~I~fyVDG~~vr~~~~~~~~g------~~~P~~Pm~i~lnlW~gg 207 (285)
. .++. ...++||+|+|+|+| +.|+|||||+++++++..+... ..+|++||+|+||+++||
T Consensus 191 ~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~~~P~ylILNlAvGg 270 (295)
T cd02180 191 AISCVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIPEEPMYIILNLGISS 270 (295)
T ss_pred ccccccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccCCCCeEEEEEEEecc
Confidence 0 1111 136899999999999 8999999999999998653111 246799999999999999
Q ss_pred CCCCCCCcccccCCCCCEEEEEeEEEEE
Q 036126 208 DWATGGGKYKVDYAYAPFVSQYSNFVLQ 235 (285)
Q Consensus 208 ~Wat~GG~~~~d~~~~Pf~~~~~~v~v~ 235 (285)
+|+ |. +.+-...|..|+||+|||+
T Consensus 271 ~w~---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 271 NFQ---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred ccC---CC-CcccCCCCCEEEEEEEEEE
Confidence 997 42 3455678999999999997
No 11
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.97 E-value=2.7e-29 Score=229.73 Aligned_cols=185 Identities=15% Similarity=0.140 Sum_probs=127.7
Q ss_pred ccCCCeEEecCCcEEEEEEeCC-----CCceeEEeeee--Ee----EEEEEEEEeccCC---CCCceEEEEEeeeCCC--
Q 036126 44 YGDQNLIVLKEGKSVRISLDEH-----TGCGFKSRSTY--QY----AFFSTSVKLPAAN---YTAGVVVTFYTSNGDV-- 107 (285)
Q Consensus 44 w~~~~v~~~~~G~~l~L~l~~~-----sga~i~Sk~~f--~Y----G~fEariKlp~~~---~~~G~v~AFwl~s~~~-- 107 (285)
++++|+.+..+| .|.|+..+. +.++|.|+.++ .| |+||||||+|. . .+.|+||||||++.+.
T Consensus 43 ~~~~n~~v~~dG-~L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~-~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 43 NSTANVQLSGNG-TLQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGD-VPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred CCCcCEEEcCCC-eEEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCC-CcccCCCCcCeeeeccCCCccC
Confidence 456889887466 688876544 35688887764 33 48999999997 3 2579999999999752
Q ss_pred ---CCCCCCeee-EEEeCCCCCCccEEEEeEeeCCccCCCCceE-Ee-CCCCCCCCcEEEEEEEcC-----CeEEEEEcC
Q 036126 108 ---YKDSHDELD-FEFLGHANNGSWVLQTNLYGNGSIGRGREER-YS-LPFDPSENFHNYSILWTE-----KTTVFYVDY 176 (285)
Q Consensus 108 ---~~~~~dEID-~E~lG~~~g~p~~~qtN~~~~G~~~~~~~~~-~~-l~~d~~~dfHtY~i~Wtp-----~~I~fyVDG 176 (285)
.||..+||| ||..|.. +...++.++........++.. .. ....+.++||+|+++|++ ++|+|||||
T Consensus 121 ~~~~WP~~GEIDImE~~~~~---~~~~~t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvDG 197 (259)
T cd02182 121 NGTNWPACGELDIMENVNGL---STGYGTLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLDG 197 (259)
T ss_pred CCCCCCccceeeeeeccCCC---CceEEEEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEECC
Confidence 368889999 7999853 344554443321100111111 00 011245899999999997 999999999
Q ss_pred eeEEEEecccccc-C---CCCCCceEEEEEeecCCCCCCCCCcccccCCCCCEEEEEeEEEEE
Q 036126 177 VPIRVTQKVEAMA-G---DYPSKPMSLYATIWNGSDWATGGGKYKVDYAYAPFVSQYSNFVLQ 235 (285)
Q Consensus 177 ~~vr~~~~~~~~g-~---~~P~~Pm~i~lnlW~gg~Wat~GG~~~~d~~~~Pf~~~~~~v~v~ 235 (285)
+++++++.....+ . ..|++||+|+||++.||+|+ |..-...-...|..|+||+|||+
T Consensus 198 ~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~--~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 198 VVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP--GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred EEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC--CCCCcccccCCCceEEEEEEEEe
Confidence 9999998642211 1 24589999999999999998 22101123457999999999996
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.95 E-value=2.3e-26 Score=217.42 Aligned_cols=141 Identities=18% Similarity=0.185 Sum_probs=102.9
Q ss_pred CceeEE--eeeeEeEEEEEEEEeccCCCCCceEEEEEeeeCCC---CCCCCCeee-EEEeCCCCCCc-------cEEEEe
Q 036126 67 GCGFKS--RSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDV---YKDSHDELD-FEFLGHANNGS-------WVLQTN 133 (285)
Q Consensus 67 ga~i~S--k~~f~YG~fEariKlp~~~~~~G~v~AFwl~s~~~---~~~~~dEID-~E~lG~~~g~p-------~~~qtN 133 (285)
.|+|.| |+.|+|||||||||||. +.|+||||||++.+. .||..+||| ||..|+....+ ..++.+
T Consensus 101 Sgri~T~~kf~f~YGrvE~RaKlP~---G~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~t 177 (330)
T cd08024 101 SARLRTKNSFSFKYGRVEVRAKLPT---GDWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGST 177 (330)
T ss_pred EEEEEeCCccceeceEEEEEEECCC---CCccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEE
Confidence 466777 45689999999999999 899999999999753 378899999 89999754221 134445
Q ss_pred EeeCCccCC--CCc--eEE-eCCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccc-------------------ccc
Q 036126 134 LYGNGSIGR--GRE--ERY-SLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQKVE-------------------AMA 189 (285)
Q Consensus 134 ~~~~G~~~~--~~~--~~~-~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~-------------------~~g 189 (285)
+|....... .+. ... ....+.+++||+|+|+|+|++|+|||||+++++++... ..+
T Consensus 178 lH~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~ 257 (330)
T cd08024 178 LHWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGG 257 (330)
T ss_pred EEeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccC
Confidence 543211100 111 111 12245678999999999999999999999999998621 011
Q ss_pred CCCC-CCceEEEEEeecCCCCC
Q 036126 190 GDYP-SKPMSLYATIWNGSDWA 210 (285)
Q Consensus 190 ~~~P-~~Pm~i~lnlW~gg~Wa 210 (285)
...| ++|++|+||+++||.|.
T Consensus 258 ~~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 258 KMAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred cCCCCCCCEEEEEEEEecCCCC
Confidence 3467 99999999999999875
No 13
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=8.6e-26 Score=214.74 Aligned_cols=176 Identities=25% Similarity=0.445 Sum_probs=135.4
Q ss_pred ccCCCeEEecCCcEEEEEEeC-------CCCceeEEeee--eEeEEEEEEEEeccCCCCCceEEEEEeeeCCC-CCCCCC
Q 036126 44 YGDQNLIVLKEGKSVRISLDE-------HTGCGFKSRST--YQYAFFSTSVKLPAANYTAGVVVTFYTSNGDV-YKDSHD 113 (285)
Q Consensus 44 w~~~~v~~~~~G~~l~L~l~~-------~sga~i~Sk~~--f~YG~fEariKlp~~~~~~G~v~AFwl~s~~~-~~~~~d 113 (285)
|..+++.+..+| .|.|.+++ .+++.++|..+ |+||++|+|||+|. ..|+||||||++... .+..++
T Consensus 76 w~~~~~~lt~~~-~l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~---~~G~wpafw~~~g~~~dg~wp~ 151 (355)
T COG2273 76 WYVSNVVLTIGG-TLELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPL---VSGLWPAFWTLTGLSRDGGWPD 151 (355)
T ss_pred eeecceeEeeCC-eeeeeechhcccccccccceEEecCcceEeeeEEEEEeccCC---CcccceeeEeccCcccCCCCCc
Confidence 444555555444 67777764 36788999888 89999999999998 999999999999743 345679
Q ss_pred eeeEEEeCCCCCCccEEEEeEeeCCccCCCCceEEeCCC-CCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccccCCC
Q 036126 114 ELDFEFLGHANNGSWVLQTNLYGNGSIGRGREERYSLPF-DPSENFHNYSILWTEKTTVFYVDYVPIRVTQKVEAMAGDY 192 (285)
Q Consensus 114 EID~E~lG~~~g~p~~~qtN~~~~G~~~~~~~~~~~l~~-d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~ 192 (285)
|||+|++|++.. +..+|+|++.++. ++.+....+++ +..++||+|+++|.++.|+|||||++++++... ...
T Consensus 152 e~d~e~lgg~~~-~~~i~t~~~~~~~--~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p----~~~ 224 (355)
T COG2273 152 EIDIEDLGGQST-NTVIQTNHYQGGG--GGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP----DYI 224 (355)
T ss_pred ceeeeeecCCCc-ccceEeeeeccCC--CCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----ccC
Confidence 999999997643 3469999998877 34444445556 888999999999999999999999999999864 345
Q ss_pred CCCceEEEEEeecCCCCCCCCCcccccCCCCCEEEEEeEE
Q 036126 193 PSKPMSLYATIWNGSDWATGGGKYKVDYAYAPFVSQYSNF 232 (285)
Q Consensus 193 P~~Pm~i~lnlW~gg~Wat~GG~~~~d~~~~Pf~~~~~~v 232 (285)
|+.||++++|+|.++.+.+.-| .......|..+.+..+
T Consensus 225 ~~~p~y~~~nl~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 262 (355)
T COG2273 225 PQIPFYVLVNLWMGGYAGGPPG--EALSAGSPLNIDYYRV 262 (355)
T ss_pred cCCcceeEEeecccCccCCCcc--ccccCCcceEeeeeee
Confidence 9999999999999987754434 2344444555554443
No 14
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.94 E-value=1.3e-25 Score=211.58 Aligned_cols=138 Identities=17% Similarity=0.157 Sum_probs=97.1
Q ss_pred CceeEEe--eeeEeEEEEEEEEeccCCCCCceEEEEEeeeCCC-C--C-CCCCeee-EEEeCCCCCC---ccEEEEeEee
Q 036126 67 GCGFKSR--STYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDV-Y--K-DSHDELD-FEFLGHANNG---SWVLQTNLYG 136 (285)
Q Consensus 67 ga~i~Sk--~~f~YG~fEariKlp~~~~~~G~v~AFwl~s~~~-~--~-~~~dEID-~E~lG~~~g~---p~~~qtN~~~ 136 (285)
.|+|.|+ +.|+|||||||||||. +.|+||||||++.+. + + |..+||| ||..||.... .....+.+|.
T Consensus 98 Sari~Tk~~f~f~YGrvEvRAKlP~---GdglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~ 174 (321)
T cd02179 98 SARINTKNSFAFKYGRVEIRAKLPK---GDWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYG 174 (321)
T ss_pred eeeEEECCcEeEeccEEEEEEEccC---CCCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEc
Confidence 3677785 5689999999999999 899999999999863 2 3 6789999 7999985210 0111122221
Q ss_pred CCcc---CCCCc---eEEeCCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEecccc---------------cc-CCCC-
Q 036126 137 NGSI---GRGRE---ERYSLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQKVEA---------------MA-GDYP- 193 (285)
Q Consensus 137 ~G~~---~~~~~---~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~---------------~g-~~~P- 193 (285)
.-.. ...+. .......+.+++||+|+|+|+|++|+|||||+++++++.... .| ...|
T Consensus 175 g~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPF 254 (321)
T cd02179 175 GPVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPF 254 (321)
T ss_pred ccccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCC
Confidence 1000 00010 001112356799999999999999999999999999986321 11 2357
Q ss_pred CCceEEEEEeecCC
Q 036126 194 SKPMSLYATIWNGS 207 (285)
Q Consensus 194 ~~Pm~i~lnlW~gg 207 (285)
++|++|+||+++||
T Consensus 255 D~~FyliLNlAVGG 268 (321)
T cd02179 255 DKEFYLSLGVGVGG 268 (321)
T ss_pred CCCeEEEEEEEecC
Confidence 99999999999998
No 15
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.68 E-value=1.8e-15 Score=148.45 Aligned_cols=183 Identities=20% Similarity=0.235 Sum_probs=119.8
Q ss_pred CCeEEecCCcEEEEEEeCC-------CCceeEEeee--eEeEEEEEEEEeccCCCCCceEEEEEeeeCCC----------
Q 036126 47 QNLIVLKEGKSVRISLDEH-------TGCGFKSRST--YQYAFFSTSVKLPAANYTAGVVVTFYTSNGDV---------- 107 (285)
Q Consensus 47 ~~v~~~~~G~~l~L~l~~~-------sga~i~Sk~~--f~YG~fEariKlp~~~~~~G~v~AFwl~s~~~---------- 107 (285)
+.|+. .+| .|.|++++. .++.++|=++ |+-|++|++++||..++..|+|||||+++.-.
T Consensus 161 ~~vtt-~~G-~l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~ast~g 238 (504)
T PF03935_consen 161 DAVTT-ENG-SLVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGASTDG 238 (504)
T ss_pred CCcEe-eCC-EEEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCccccccccCc
Confidence 44444 345 789999863 2455666454 67899999999998666789999999997610
Q ss_pred CC---------------------------------------------CCCCeee-EEEeCCCCC-Ccc---EEEEeEe--
Q 036126 108 YK---------------------------------------------DSHDELD-FEFLGHANN-GSW---VLQTNLY-- 135 (285)
Q Consensus 108 ~~---------------------------------------------~~~dEID-~E~lG~~~g-~p~---~~qtN~~-- 135 (285)
.| ....||| ||-...... .+. .+|..-|
T Consensus 239 ~WPySYd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP~d~ 318 (504)
T PF03935_consen 239 MWPYSYDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAPFDI 318 (504)
T ss_pred eecccccccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeeccccc
Confidence 01 0124999 797543211 011 1222111
Q ss_pred -----------eCCcc---C---CCCceE-E----eCCCC-----CCCCcEEEEEEEcCC-----eEEEEEcCeeEEEEe
Q 036126 136 -----------GNGSI---G---RGREER-Y----SLPFD-----PSENFHNYSILWTEK-----TTVFYVDYVPIRVTQ 183 (285)
Q Consensus 136 -----------~~G~~---~---~~~~~~-~----~l~~d-----~~~dfHtY~i~Wtp~-----~I~fyVDG~~vr~~~ 183 (285)
.+... + ++.-|+ + .+..+ ...+||+|++||.|. .|+|+|||+++.++.
T Consensus 319 ~y~~~~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~ 398 (504)
T PF03935_consen 319 WYRPDYDFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTIN 398 (504)
T ss_pred CCCCCCCceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEEEEE
Confidence 00000 0 111111 1 11111 238899999999864 799999999999997
Q ss_pred ccccc-----c-CCCCCCceEEEEEeecCCCCCCCCCcccccCC--CCCEEEEEeEEEEEee
Q 036126 184 KVEAM-----A-GDYPSKPMSLYATIWNGSDWATGGGKYKVDYA--YAPFVSQYSNFVLQAC 237 (285)
Q Consensus 184 ~~~~~-----g-~~~P~~Pm~i~lnlW~gg~Wat~GG~~~~d~~--~~Pf~~~~~~v~v~~c 237 (285)
..... + ..+|..||+|++|+....+|+ .+||. .+|.+|.||+|||++=
T Consensus 399 a~Al~~~~~I~~R~Ip~EPMyIIlNlgmS~sf~------~vd~~~L~FP~~M~IDYVRVYQ~ 454 (504)
T PF03935_consen 399 AEALGPNPNIGQRPIPEEPMYIILNLGMSSSFG------YVDWNHLCFPATMRIDYVRVYQP 454 (504)
T ss_pred hhhcCCCCCcCccccCcCCceeeeccccccccC------ccccccccccceEEEeEEEEecc
Confidence 64221 1 368999999999999999996 46775 5899999999999853
No 16
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.64 E-value=8.2e-17 Score=112.59 Aligned_cols=35 Identities=46% Similarity=1.066 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHhCCeeeecccCCCCCCCC-CCCC
Q 036126 246 LTTEERNKMKEFRSKYVTYSYCVDSKRYPIP-LPEC 280 (285)
Q Consensus 246 l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~-~~ec 280 (285)
|++.|+++|+|||+||||||||+|++|||.. |+||
T Consensus 16 L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 16 LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp --HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 9999999999999999999999999999985 9999
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.50 E-value=2.3e-13 Score=126.13 Aligned_cols=147 Identities=21% Similarity=0.378 Sum_probs=96.2
Q ss_pred cCCcEEEEEEeCCC---------CceeEEeeeeEeEEEEEEE-EeccCCCCCceEEEEEeeeCCCCCCCCCeee-EEEeC
Q 036126 53 KEGKSVRISLDEHT---------GCGFKSRSTYQYAFFSTSV-KLPAANYTAGVVVTFYTSNGDVYKDSHDELD-FEFLG 121 (285)
Q Consensus 53 ~~G~~l~L~l~~~s---------ga~i~Sk~~f~YG~fEari-Klp~~~~~~G~v~AFwl~s~~~~~~~~dEID-~E~lG 121 (285)
.+| .|.|.+|+.+ .++|.||+.|.+|+||+|+ |||. +.|+||||||++.. ||..+||| ||.++
T Consensus 47 ~~g-~l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~---g~G~WPAfW~~g~~--WP~~GEIDImE~vn 120 (293)
T cd02181 47 NSG-NVYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPG---GCGTWPAFWTVGPN--WPNGGEIDIIEGVN 120 (293)
T ss_pred eCC-eEEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCC---CCCccchhhhcCCC--CCCCCcEEEEeccC
Confidence 345 5788887542 3678999999999999997 9998 89999999999874 89999999 89997
Q ss_pred CCCCCccEEEEeEeeC-Ccc-------CC---------------CCc------eEEeCCCCCCCCcEEEEEEEcCCeEEE
Q 036126 122 HANNGSWVLQTNLYGN-GSI-------GR---------------GRE------ERYSLPFDPSENFHNYSILWTEKTTVF 172 (285)
Q Consensus 122 ~~~g~p~~~qtN~~~~-G~~-------~~---------------~~~------~~~~l~~d~~~dfHtY~i~Wtp~~I~f 172 (285)
..+. .+..+|.. |.. ++ +-. ..+-..|+ ..+=-+|+++|+++.|+.
T Consensus 121 ~~~~----n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~v 195 (293)
T cd02181 121 LQTS----NQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKV 195 (293)
T ss_pred CCCc----eEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCcEEE
Confidence 5322 33333322 111 00 000 00111222 344589999999999875
Q ss_pred EE---cCeeEEEEeccc---ccc---CCCCC---------CceEEEEEeecCCCCC
Q 036126 173 YV---DYVPIRVTQKVE---AMA---GDYPS---------KPMSLYATIWNGSDWA 210 (285)
Q Consensus 173 yV---DG~~vr~~~~~~---~~g---~~~P~---------~Pm~i~lnlW~gg~Wa 210 (285)
+. +.+|--...... .-| ..||. ++++|++++=.-|+||
T Consensus 196 Wff~R~~iP~di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 196 WFFPRGSIPADITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred EEecCCCCCcccccCCCCCcccCcccccCCCCCCChhHhcccCEEEEEeecccccc
Confidence 54 333322211110 112 24664 8999999999989999
No 18
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=95.03 E-value=1.1 Score=35.60 Aligned_cols=74 Identities=18% Similarity=0.312 Sum_probs=43.7
Q ss_pred CCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccccCCCC-CCceEEEEEeecCCCCCCCCCcccccCCCCCEEEEEeEE
Q 036126 154 PSENFHNYSILWTEKTTVFYVDYVPIRVTQKVEAMAGDYP-SKPMSLYATIWNGSDWATGGGKYKVDYAYAPFVSQYSNF 232 (285)
Q Consensus 154 ~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~i~lnlW~gg~Wat~GG~~~~d~~~~Pf~~~~~~v 232 (285)
+...||..++.|....+.+||||+.+.+..... ..+ .....+.+ |+.. ....+|...+++|
T Consensus 83 ~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~----~~~~~~~~~~~i----G~~~----------~~~~~~~g~i~~~ 144 (157)
T PF13385_consen 83 PDNKWHHLALTYDGSTVTLYVNGELVGSSTIPS----NISLNSNGPLFI----GGSG----------GGSSPFNGYIDDL 144 (157)
T ss_dssp -TT-EEEEEEEEETTEEEEEETTEEETTCTEES----SSSTTSCCEEEE----SS-S----------TT--B-EEEEEEE
T ss_pred CCCCEEEEEEEEECCeEEEEECCEEEEeEeccC----CcCCCCcceEEE----eecC----------CCCCceEEEEEEE
Confidence 358999999999999999999999876654321 111 11222222 2222 2257999999999
Q ss_pred EEEeeccCccCCCCCHHHHH
Q 036126 233 VLQACSNSDCDDSLTTEERN 252 (285)
Q Consensus 233 ~v~~c~~~~c~~~l~~~~~~ 252 (285)
+|.. ..||++|++
T Consensus 145 ~i~~-------~aLt~~eI~ 157 (157)
T PF13385_consen 145 RIYN-------RALTAEEIQ 157 (157)
T ss_dssp EEES-------S---HHHHH
T ss_pred EEEC-------ccCCHHHcC
Confidence 9984 357777753
No 19
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=91.20 E-value=7 Score=31.71 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=44.3
Q ss_pred CCCCcEEEEEEEcC--CeEEEEEcCeeEEEEeccccccCCCC-CCceEEEEEeecCCCCCCCCCcccccCCCCCEEEEEe
Q 036126 154 PSENFHNYSILWTE--KTTVFYVDYVPIRVTQKVEAMAGDYP-SKPMSLYATIWNGSDWATGGGKYKVDYAYAPFVSQYS 230 (285)
Q Consensus 154 ~~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~i~lnlW~gg~Wat~GG~~~~d~~~~Pf~~~~~ 230 (285)
+...||...+-++. .+|+.||||+++.+.... ..+ ..|+.|-.....+ + ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~~-------~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILLG-------G-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccCC-------C-----CCCCCceEEee
Confidence 34889999999988 789999999988654321 112 3344332111111 1 12358999999
Q ss_pred EEEEEeec
Q 036126 231 NFVLQACS 238 (285)
Q Consensus 231 ~v~v~~c~ 238 (285)
.|||..+.
T Consensus 122 evriy~~a 129 (133)
T smart00560 122 EVRVYNRA 129 (133)
T ss_pred EEEEeccc
Confidence 99998653
No 20
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=88.93 E-value=8.1 Score=32.49 Aligned_cols=108 Identities=10% Similarity=0.062 Sum_probs=56.3
Q ss_pred CCceeEEeeeeEeEEEEEEEEeccCCCCCceEEEEEeeeC-C---CCCCCCCeeeEEEeCCCCCCccEEEEeEeeCCccC
Q 036126 66 TGCGFKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNG-D---VYKDSHDELDFEFLGHANNGSWVLQTNLYGNGSIG 141 (285)
Q Consensus 66 sga~i~Sk~~f~YG~fEariKlp~~~~~~G~v~AFwl~s~-~---~~~~~~dEID~E~lG~~~g~p~~~qtN~~~~G~~~ 141 (285)
.++-+.++..|.=..+++.+|+.+ + | -+++++-.. . ......-|+.+.--+.... .....|...
T Consensus 42 ~~~~l~~~~~~~df~l~~d~k~~~-~---~-~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~~-------~~~~~G~~~ 109 (185)
T PF06439_consen 42 GGGYLYTDKKFSDFELEVDFKITP-G---G-NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGTG-------LPNSTGSLY 109 (185)
T ss_dssp SS--EEESSEBSSEEEEEEEEE-T-T-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCST-------TTTSTTSBT
T ss_pred CcceEEECCccccEEEEEEEEECC-C---C-CeEEEEEeccccCCCCcceEEEEEEECCCCccC-------CCCccceEE
Confidence 456678887777778999999855 2 1 334444433 0 0112333554332111100 000112210
Q ss_pred CC--CceEE-eCCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEecc
Q 036126 142 RG--REERY-SLPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQKV 185 (285)
Q Consensus 142 ~~--~~~~~-~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~ 185 (285)
.. ..... .....+..+||++.|.-..++|+.+|||++|-++...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 110 DEPPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp TTB-TCB-SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred EeccccccccccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 00 00000 1112356899999999999999999999999999864
No 21
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=88.60 E-value=0.85 Score=40.18 Aligned_cols=28 Identities=29% Similarity=0.565 Sum_probs=24.8
Q ss_pred CCcEEEEEEEcC--CeEEEEEcCeeEEEEe
Q 036126 156 ENFHNYSILWTE--KTTVFYVDYVPIRVTQ 183 (285)
Q Consensus 156 ~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~ 183 (285)
.+||.|.|...| ..-.|||||++|++..
T Consensus 92 ~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~ 121 (198)
T PF09264_consen 92 HGYHKYEIVFSPLTNTASFYFDGTLIATWS 121 (198)
T ss_dssp CSEEEEEEEEETTTTEEEEEETTEEEEEE-
T ss_pred cceeEEEEEecCCCCceEEEECCEEEeecc
Confidence 579999999977 8899999999999853
No 22
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=84.99 E-value=19 Score=31.07 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=26.9
Q ss_pred CCCCcEEEEEEEcCCeEEEEEcCeeEEEEe
Q 036126 154 PSENFHNYSILWTEKTTVFYVDYVPIRVTQ 183 (285)
Q Consensus 154 ~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 183 (285)
....||..++.+..+++++|||++++.+..
T Consensus 115 ~dg~WH~lal~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 115 ADGQWHKLALSVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred ccCCceEEEEEEeCCEEEEEECCcccccee
Confidence 357899999999999999999999987764
No 23
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=84.11 E-value=28 Score=30.38 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=54.3
Q ss_pred CCCCcEEEEEEEc--CCeEEEEEcCeeEEEEeccccccCCCCCCceEEEEEeecCCCCCCCCCcccccCCCCCEEEEEeE
Q 036126 154 PSENFHNYSILWT--EKTTVFYVDYVPIRVTQKVEAMAGDYPSKPMSLYATIWNGSDWATGGGKYKVDYAYAPFVSQYSN 231 (285)
Q Consensus 154 ~~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~i~lnlW~gg~Wat~GG~~~~d~~~~Pf~~~~~~ 231 (285)
....||...+.|+ ..++.+||||+++.+-.- ..+..+|. ...|.|+.-- ..+ ||. .+. ...|.-.+++
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~~--~~~~~~~~-~g~l~lG~~q-~~~---gg~--~~~-~~~f~G~I~~ 157 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKSL--KKGYTVGP-GGSIILGQEQ-DSY---GGG--FDA-TQSFVGEISD 157 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEeccccc--cCCCEECC-CCeEEEeecc-cCC---CCC--CCC-CcceEEEEce
Confidence 5678999999998 457999999998754431 11223332 2234443210 011 342 232 3579999999
Q ss_pred EEEEeeccCccCCCCCHHHHHHHH
Q 036126 232 FVLQACSNSDCDDSLTTEERNKMK 255 (285)
Q Consensus 232 v~v~~c~~~~c~~~l~~~~~~~~~ 255 (285)
|+|-. ..|+++|+++|.
T Consensus 158 v~iw~-------~~Ls~~eI~~l~ 174 (201)
T cd00152 158 VNMWD-------SVLSPEEIKNVY 174 (201)
T ss_pred eEEEc-------ccCCHHHHHHHH
Confidence 99973 579999998775
No 24
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=82.91 E-value=7.9 Score=40.33 Aligned_cols=53 Identities=19% Similarity=0.357 Sum_probs=39.3
Q ss_pred CCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccccCCCCCCceEEEEEeecCCCCC
Q 036126 154 PSENFHNYSILWTEKTTVFYVDYVPIRVTQKVEAMAGDYPSKPMSLYATIWNGSDWA 210 (285)
Q Consensus 154 ~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~i~lnlW~gg~Wa 210 (285)
-.++||-|.+.-.=-.++.||||+-..-..-. .+||-.|.++-.-+=+|.-|.
T Consensus 440 CD~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~----ddwplHpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 440 CDNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT----DDWPLHPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhhheeEEeecCceEEEEEcCcccCCceec----cCCccCcccccceeEEeeecc
Confidence 36899999999975559999999855332211 478877777777777777786
No 25
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=82.05 E-value=6.7 Score=35.77 Aligned_cols=82 Identities=17% Similarity=0.298 Sum_probs=49.0
Q ss_pred EEEEEEeccCCC----CCceEEEEEeeeCC-----CC-------C-CCCCeee-EEEeCCCCCCccEEEEeEee-CCccC
Q 036126 81 FSTSVKLPAANY----TAGVVVTFYTSNGD-----VY-------K-DSHDELD-FEFLGHANNGSWVLQTNLYG-NGSIG 141 (285)
Q Consensus 81 fEariKlp~~~~----~~G~v~AFwl~s~~-----~~-------~-~~~dEID-~E~lG~~~g~p~~~qtN~~~-~G~~~ 141 (285)
|=.+.++|.... ...=.||+||++.. +| | ..++|+| ||.|... +. .+.+.+|. +|...
T Consensus 103 Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g--~~-k~~St~H~~qG~~~ 179 (235)
T PF10287_consen 103 FLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSG--DD-KLKSTFHDYQGTDD 179 (235)
T ss_pred EEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCC--Cc-eeEEEEecccCccc
Confidence 566777787210 23457999999874 23 2 3689999 8999653 33 46666664 44310
Q ss_pred ---CCCceEEeCCC-CCCCCcEEEEEEEcCC
Q 036126 142 ---RGREERYSLPF-DPSENFHNYSILWTEK 168 (285)
Q Consensus 142 ---~~~~~~~~l~~-d~~~dfHtY~i~Wtp~ 168 (285)
+.-... .| .|++..-++++.++.+
T Consensus 180 ~~~g~G~~~---yf~RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 180 INGGGGSSD---YFKRPTSGTMKVAVIFDSS 207 (235)
T ss_pred cCCCCCCCC---cccCCCCCCeEEEEEEcCC
Confidence 111111 12 3677888888888643
No 26
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=80.83 E-value=38 Score=29.69 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=54.0
Q ss_pred CCCCcEEEEEEEc--CCeEEEEEcCeeEEEEeccccccCCCCCCceEEEEEeecCCCCCCCCCcccccCCCCCEEEEEeE
Q 036126 154 PSENFHNYSILWT--EKTTVFYVDYVPIRVTQKVEAMAGDYPSKPMSLYATIWNGSDWATGGGKYKVDYAYAPFVSQYSN 231 (285)
Q Consensus 154 ~~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~i~lnlW~gg~Wat~GG~~~~d~~~~Pf~~~~~~ 231 (285)
....||...+.|+ ..++.+||||+++.. . .-..+..++ .+-.|.|+.- -+.+ ||. .+. ...|.-.+++
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~-~-~~~~g~~i~-~~G~lvlGq~-qd~~---gg~--f~~-~~~f~G~i~~ 157 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR-K-GLAKGYTVK-PGGSIILGQE-QDSY---GGG--FDA-TQSFVGEIGD 157 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc-c-cccCCcEEC-CCCEEEEEec-ccCC---CCC--CCC-CcceeEEEee
Confidence 3578999999997 457999999998621 1 111122233 2333444431 1222 342 333 3469999999
Q ss_pred EEEEeeccCccCCCCCHHHHHHHHH
Q 036126 232 FVLQACSNSDCDDSLTTEERNKMKE 256 (285)
Q Consensus 232 v~v~~c~~~~c~~~l~~~~~~~~~~ 256 (285)
|+|-. ..|+++|+++|..
T Consensus 158 v~iw~-------~~Ls~~eI~~l~~ 175 (206)
T smart00159 158 LNMWD-------SVLSPEEIKSVYK 175 (206)
T ss_pred eEEec-------ccCCHHHHHHHHc
Confidence 99973 5799999988753
No 27
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=74.87 E-value=1.9 Score=33.90 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=9.2
Q ss_pred CccchhHHHHHHHHHHHhhh
Q 036126 1 MAASFKELILCLFFMTSVVL 20 (285)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (285)
|| +|.++||.+++.+|+.
T Consensus 1 Ma--SK~~llL~l~LA~lLl 18 (95)
T PF07172_consen 1 MA--SKAFLLLGLLLAALLL 18 (95)
T ss_pred Cc--hhHHHHHHHHHHHHHH
Confidence 66 5666555544333333
No 28
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=74.41 E-value=59 Score=28.42 Aligned_cols=74 Identities=12% Similarity=0.218 Sum_probs=46.2
Q ss_pred eCCCCCCCCcEEEEEE--EcC---CeEEEEEcCeeEEEEeccccccCCCC-CCceEEEEEeecCCCCCCCCCcccccCCC
Q 036126 149 SLPFDPSENFHNYSIL--WTE---KTTVFYVDYVPIRVTQKVEAMAGDYP-SKPMSLYATIWNGSDWATGGGKYKVDYAY 222 (285)
Q Consensus 149 ~l~~d~~~dfHtY~i~--Wtp---~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~i~lnlW~gg~Wat~GG~~~~d~~~ 222 (285)
.+...+...||.+.|. |.+ ..|..++||++|..++.. ..++ ....++.++|.-.+ |....+ +...
T Consensus 145 ~~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~----~~~~~~~~~y~K~GiYr~~-~~~~~~----~~~~ 215 (224)
T PF14099_consen 145 DLGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGP----TGYNDDRGPYFKFGIYRSG-WKNDPN----ESDT 215 (224)
T ss_dssp ECCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEE----ECECCSSEEEEEEEEEEHC-CHHHSC------SS
T ss_pred cCCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCC----ceeCCCCcceeEEEEECCC-CcCCCc----cccc
Confidence 3443455889998764 765 679999999999888863 2344 47888999887543 221111 1111
Q ss_pred CCEEEEEeEEEE
Q 036126 223 APFVSQYSNFVL 234 (285)
Q Consensus 223 ~Pf~~~~~~v~v 234 (285)
. .+||+|++
T Consensus 216 ~---vy~D~v~~ 224 (224)
T PF14099_consen 216 Q---VYYDNVRI 224 (224)
T ss_dssp ----EEEEEEE-
T ss_pred E---EEeccccC
Confidence 1 89999875
No 29
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=71.66 E-value=49 Score=26.31 Aligned_cols=85 Identities=18% Similarity=0.150 Sum_probs=48.6
Q ss_pred eEEEEEEEEeccCCCCCceEEEEEeeeCCCCCCCCCeeeEEEeCCCCCCccEEEEeEeeCCccCCCCceEEeCCC-CCCC
Q 036126 78 YAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKDSHDELDFEFLGHANNGSWVLQTNLYGNGSIGRGREERYSLPF-DPSE 156 (285)
Q Consensus 78 YG~fEariKlp~~~~~~G~v~AFwl~s~~~~~~~~dEID~E~lG~~~g~p~~~qtN~~~~G~~~~~~~~~~~l~~-d~~~ 156 (285)
...+++++|... ..|++ |++-+. ...+-+-+|... | .+...+- .|. ....+.... -...
T Consensus 21 ~~~i~~~frt~~---~~g~l--~~~~~~----~~~~~~~l~l~~---g---~l~~~~~-~g~----~~~~~~~~~~v~dg 80 (151)
T cd00110 21 RLSISFSFRTTS---PNGLL--LYAGSQ----NGGDFLALELED---G---RLVLRYD-LGS----GSLVLSSKTPLNDG 80 (151)
T ss_pred eeEEEEEEEeCC---CCeEE--EEecCC----CCCCEEEEEEEC---C---EEEEEEc-CCc----ccEEEEccCccCCC
Confidence 456777788776 56655 232221 134555566653 2 2333322 121 122222221 2356
Q ss_pred CcEEEEEEEcCCeEEEEEcCeeEEEE
Q 036126 157 NFHNYSILWTEKTTVFYVDYVPIRVT 182 (285)
Q Consensus 157 dfHtY~i~Wtp~~I~fyVDG~~vr~~ 182 (285)
.||...|.+....++.+|||..+.+.
T Consensus 81 ~Wh~v~i~~~~~~~~l~VD~~~~~~~ 106 (151)
T cd00110 81 QWHSVSVERNGRSVTLSVDGERVVES 106 (151)
T ss_pred CEEEEEEEECCCEEEEEECCccEEee
Confidence 89999999999999999999854333
No 30
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=65.16 E-value=60 Score=24.80 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=47.2
Q ss_pred CCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccccCCCCCCceEEEEEeecCCCCCCCCCcccccCCCCCEEEEEeEEE
Q 036126 154 PSENFHNYSILWTEKTTVFYVDYVPIRVTQKVEAMAGDYPSKPMSLYATIWNGSDWATGGGKYKVDYAYAPFVSQYSNFV 233 (285)
Q Consensus 154 ~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~i~lnlW~gg~Wat~GG~~~~d~~~~Pf~~~~~~v~ 233 (285)
....||.-.|.=....++..||+............ ..-+...-.++.||.-.......... ...|.--+++++
T Consensus 52 ~dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~-----~~~~~~~~~l~iGg~~~~~~~~~~~~--~~~f~Gci~~l~ 124 (128)
T PF02210_consen 52 NDGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSS-----SDSLDPDGSLYIGGLPESNQPSGSVD--TPGFVGCIRDLR 124 (128)
T ss_dssp TSSSEEEEEEEEETTEEEEEETTSEEEEEESSSTT-----HHCBESEEEEEESSTTTTCTCTTSST--TSB-EEEEEEEE
T ss_pred cccceeEEEEEEeeeeEEEEecCccceEEeccccc-----eecccCCCCEEEecccCccccccccC--CCCcEEEcCeEE
Confidence 35779999999999999999999988887643210 00122333456676543211110111 667888888888
Q ss_pred EEe
Q 036126 234 LQA 236 (285)
Q Consensus 234 v~~ 236 (285)
|.|
T Consensus 125 vng 127 (128)
T PF02210_consen 125 VNG 127 (128)
T ss_dssp ETT
T ss_pred ECC
Confidence 753
No 31
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=54.32 E-value=1.6e+02 Score=26.12 Aligned_cols=142 Identities=15% Similarity=0.209 Sum_probs=72.2
Q ss_pred eEeEEEEEEEEeccCCCCCceEEEEEeeeCCCCCC-------CCCeeeEEEeCCCCCCccEEEEeEeeCCccCCCCceEE
Q 036126 76 YQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKD-------SHDELDFEFLGHANNGSWVLQTNLYGNGSIGRGREERY 148 (285)
Q Consensus 76 f~YG~fEariKlp~~~~~~G~v~AFwl~s~~~~~~-------~~dEID~E~lG~~~g~p~~~qtN~~~~G~~~~~~~~~~ 148 (285)
..-|.+-+|-|... .. -+-|++-.+++.... ..+++=+|+-+......+...+..-..+.
T Consensus 32 L~~gTI~i~Fk~~~---~~-~~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~~--------- 98 (190)
T PF02973_consen 32 LEEGTIVIRFKSDS---NS-GIQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRGG--------- 98 (190)
T ss_dssp -SSEEEEEEEEESS----S-SEEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--SE---------
T ss_pred ccccEEEEEEecCC---Cc-ceeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEeccc---------
Confidence 44677778888755 34 445666666542110 11266678776654332222222111110
Q ss_pred eCCCCCCCCcEEEEEEEc--CCeEEEEEcCeeEEEEeccccccCCCC-C--CceEEEEEeecCCCCCCCCCcccccCCCC
Q 036126 149 SLPFDPSENFHNYSILWT--EKTTVFYVDYVPIRVTQKVEAMAGDYP-S--KPMSLYATIWNGSDWATGGGKYKVDYAYA 223 (285)
Q Consensus 149 ~l~~d~~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P-~--~Pm~i~lnlW~gg~Wat~GG~~~~d~~~~ 223 (285)
. + ....||+-++.=+ ..+.++|+||.++.++.... ..|- + .+=.+.+ | |.....-...
T Consensus 99 ~-~--~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~---~~Fis~i~~~n~~~i----G-------~t~R~g~~~y 161 (190)
T PF02973_consen 99 Y-K--NNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS---GNFISDIPGLNSVQI----G-------GTNRAGSNAY 161 (190)
T ss_dssp E-T--TEES-EEEEEEEETTTTEEEEEETTCEEEEEEECT---SS-GGGSTT--EEEE----S-------SEEETTEEES
T ss_pred c-c--CCceEEEEEEEEecCCCeEEEEeCCeeEEEecccc---ccHhhcCcCCceEEE----c-------ceEeCCCcee
Confidence 0 1 2356888888876 67899999998888775432 2221 1 2222332 2 2111122367
Q ss_pred CEEEEEeEEEEEeeccCccCCCCCHHHHHHH
Q 036126 224 PFVSQYSNFVLQACSNSDCDDSLTTEERNKM 254 (285)
Q Consensus 224 Pf~~~~~~v~v~~c~~~~c~~~l~~~~~~~~ 254 (285)
||.-.+++++|+.+ .|++++..+.
T Consensus 162 ~f~G~I~~l~iYn~-------aLsdeel~~~ 185 (190)
T PF02973_consen 162 PFNGTIDNLKIYNR-------ALSDEELKAR 185 (190)
T ss_dssp --EEEEEEEEEESS----------HHHHHHH
T ss_pred cccceEEEEEEEcC-------cCCHHHHHHh
Confidence 99999999999964 4777776554
No 32
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=51.10 E-value=68 Score=28.98 Aligned_cols=59 Identities=20% Similarity=0.343 Sum_probs=38.2
Q ss_pred CCcEEEEEEEcCCeEEEEEcCeeEEEEeccccccCCCCCCceEEEEEeecCCCCCCCCCcccccCC-CCCEEEEEeEEEE
Q 036126 156 ENFHNYSILWTEKTTVFYVDYVPIRVTQKVEAMAGDYPSKPMSLYATIWNGSDWATGGGKYKVDYA-YAPFVSQYSNFVL 234 (285)
Q Consensus 156 ~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~i~lnlW~gg~Wat~GG~~~~d~~-~~Pf~~~~~~v~v 234 (285)
..++.-.|.=....|.|.|||.+|...+..... ..|. -.+| +|-.. -+|..|.|+++.|
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~~--~gPv----------------l~~G--~IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGST--YGPV----------------LRGG--RIGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SSS--SSS-------------------SB--EEEEEEETT-EEEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCCc--cCCc----------------ccCc--EeeeeccchhhhhhccccC
Confidence 366667888899999999999999999754211 1120 0145 34443 3799999999986
No 33
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.95 E-value=1.8e+02 Score=26.20 Aligned_cols=59 Identities=12% Similarity=0.257 Sum_probs=41.4
Q ss_pred EEEEEEeCCCCceeEEeeeeEeEEEEEEEEeccCCCCCceEEEEEeeeCCCCCC-CCCeeeEEEeC
Q 036126 57 SVRISLDEHTGCGFKSRSTYQYAFFSTSVKLPAANYTAGVVVTFYTSNGDVYKD-SHDELDFEFLG 121 (285)
Q Consensus 57 ~l~L~l~~~sga~i~Sk~~f~YG~fEariKlp~~~~~~G~v~AFwl~s~~~~~~-~~dEID~E~lG 121 (285)
.+.+.+..+.|..+.++..+.-|+|...+- ..|+.-+-++.-.....| ...+||++|--
T Consensus 61 ~~~~~Vts~~G~~~~~~env~~gqFaFta~------e~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~ 120 (210)
T KOG1691|consen 61 KLSVKVTSPYGNNLHSKENVTKGQFAFTAE------ESGMYEACFTADVPGHKPETKRSIDLDWKT 120 (210)
T ss_pred eEEEEEEcCCCceeehhhccccceEEEEec------cCCcEEEEEecccCCCCCCcceEEEEEeec
Confidence 488888888999999999998998876554 356666666652222223 34789988853
No 34
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=34.63 E-value=3.1e+02 Score=23.89 Aligned_cols=86 Identities=24% Similarity=0.339 Sum_probs=48.2
Q ss_pred CCCCcEEEEEEEcC--CeEEEEEcCeeEEEEeccccccCCCCCCceEEEEEeecCCCCCCCCCcccccCCCCCEEEEEeE
Q 036126 154 PSENFHNYSILWTE--KTTVFYVDYVPIRVTQKVEAMAGDYPSKPMSLYATIWNGSDWATGGGKYKVDYAYAPFVSQYSN 231 (285)
Q Consensus 154 ~~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~i~lnlW~gg~Wat~GG~~~~d~~~~Pf~~~~~~ 231 (285)
....||.+.+-|+. ..+.+||||+....-.. ..|...|.... ++|+.-- | .-||. .| ....|.-.+.+
T Consensus 82 ~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~~--~~g~~i~~gG~-~vlGQeQ--d--~~gG~--fd-~~q~F~G~i~~ 151 (195)
T PF00354_consen 82 RDGQWHHICVTWDSSTGRWQLYVDGVRLSSTGL--ATGHSIPGGGT-LVLGQEQ--D--SYGGG--FD-ESQAFVGEISD 151 (195)
T ss_dssp -TSS-EEEEEEEETTTTEEEEEETTEEEEEEES--STT--B-SSEE-EEESS-B--S--BTTBT--CS-GGGB--EEEEE
T ss_pred CCCCcEEEEEEEecCCcEEEEEECCEecccccc--cCCceECCCCE-EEECccc--c--ccCCC--cC-CccEeeEEEec
Confidence 35789999999975 78999999995433221 22344443333 3443321 1 12452 23 23579999999
Q ss_pred EEEEeeccCccCCCCCHHHHHHHHH
Q 036126 232 FVLQACSNSDCDDSLTTEERNKMKE 256 (285)
Q Consensus 232 v~v~~c~~~~c~~~l~~~~~~~~~~ 256 (285)
|++=. ..|+++++++|..
T Consensus 152 ~~iWd-------~vLs~~eI~~l~~ 169 (195)
T PF00354_consen 152 FNIWD-------RVLSPEEIRALAS 169 (195)
T ss_dssp EEEES-------S---HHHHHHHHH
T ss_pred eEEEe-------eeCCHHHHHHHHh
Confidence 99863 6899999998865
No 35
>smart00282 LamG Laminin G domain.
Probab=30.67 E-value=2.6e+02 Score=21.83 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=23.8
Q ss_pred CCCcEEEEEEEcCCeEEEEEcCeeEEEE
Q 036126 155 SENFHNYSILWTEKTTVFYVDYVPIRVT 182 (285)
Q Consensus 155 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~~ 182 (285)
...||.-.|.-....+..+|||......
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~ 88 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSG 88 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccE
Confidence 5689999999999999999999755433
No 36
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=29.70 E-value=1.2e+02 Score=22.33 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=28.3
Q ss_pred ccCCCeEEecCCcEEEEEEeCCCCceeEEeeeeEeEEEEEEEEecc
Q 036126 44 YGDQNLIVLKEGKSVRISLDEHTGCGFKSRSTYQYAFFSTSVKLPA 89 (285)
Q Consensus 44 w~~~~v~~~~~G~~l~L~l~~~sga~i~Sk~~f~YG~fEariKlp~ 89 (285)
+.+++|++.-++..|.++-.+..... ...+.+|.|+=++.||.
T Consensus 18 ~~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~ 60 (83)
T cd06526 18 FKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPE 60 (83)
T ss_pred CCHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCC
Confidence 45566666555667777765433221 23467899999999997
No 37
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=28.79 E-value=67 Score=24.06 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=23.2
Q ss_pred eEEEEEcCeeEEEEeccccccCCCC-CCceEEEEEeec
Q 036126 169 TTVFYVDYVPIRVTQKVEAMAGDYP-SKPMSLYATIWN 205 (285)
Q Consensus 169 ~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~i~lnlW~ 205 (285)
.+.|||||+++.+...... ..|+ ..|..-.|.+=+
T Consensus 44 ~~~W~vdg~~~g~~~~~~~--~~~~~~~~G~h~l~vvD 79 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGHQ--LFWQPDRPGEHTLTVVD 79 (89)
T ss_pred cEEEEECCEEcccCCCCCe--EEeCCCCCeeEEEEEEc
Confidence 7999999999965554321 2344 477777777643
No 38
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=24.93 E-value=3.3e+02 Score=21.04 Aligned_cols=46 Identities=17% Similarity=0.141 Sum_probs=34.5
Q ss_pred CCCCcEEEEEEEcCCeEEEEEcCe--eEEEEeccccccCCCCCCceEEEEEeec
Q 036126 154 PSENFHNYSILWTEKTTVFYVDYV--PIRVTQKVEAMAGDYPSKPMSLYATIWN 205 (285)
Q Consensus 154 ~~~dfHtY~i~Wtp~~I~fyVDG~--~vr~~~~~~~~g~~~P~~Pm~i~lnlW~ 205 (285)
...+|..|.|.|....|.+..||. |+-+++.. -|-...++=++-|.
T Consensus 50 s~~e~~~fwI~~~~G~I~vg~~g~~~pfl~~~Dp------~~~~v~yvGft~w~ 97 (102)
T PF12248_consen 50 SPSEFRMFWISWRDGTIRVGRGGEDEPFLEWTDP------EPIPVNYVGFTGWG 97 (102)
T ss_pred CCCccEEEEEEECCCEEEEEECCCccEEEEEECC------CCCcccEEEEecCC
Confidence 368899999999999999999987 77777632 24445566666664
No 39
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=24.31 E-value=95 Score=26.45 Aligned_cols=66 Identities=14% Similarity=0.219 Sum_probs=36.4
Q ss_pred Cccc-hhHHHHHHHHHHHhhhccccc------cccCC------cccccccccccccccCCCeEEecCCc--EEEEEEeCC
Q 036126 1 MAAS-FKELILCLFFMTSVVLFIPAY------SLSKK------FTTSYFDEAFSRLYGDQNLIVLKEGK--SVRISLDEH 65 (285)
Q Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~------~~~~~f~~~~~~~w~~~~v~~~~~G~--~l~L~l~~~ 65 (285)
||+. .++|.+ |++.+++.|++.|+ ..... .-.....++|.+.=.|+++-+..++. .+.|-+ |.
T Consensus 1 mAs~a~SeLV~-FIaalLiaasvag~Lt~~t~~l~~sm~d~~~~~a~~i~~dFaIIndPg~i~~~~~~g~~t~t~yi-KN 78 (154)
T COG3354 1 MASVASSELVM-FIAALLIAASVAGALTDSTTHLSDSMNDRSDMLADMIQTDFAIINDPGQIPYVGTDGPYTYTFYI-KN 78 (154)
T ss_pred CCccchhHHHH-HHHHHHHHHHHHHHhhhhHhhhhhhhchhhHHHHHHhhccEEEecCCCCCccccCCCceEEEEEE-ec
Confidence 5554 345544 44666666665555 01011 11235788888888888887765432 466655 44
Q ss_pred CCc
Q 036126 66 TGC 68 (285)
Q Consensus 66 sga 68 (285)
+|+
T Consensus 79 tG~ 81 (154)
T COG3354 79 TGS 81 (154)
T ss_pred CCC
Confidence 443
No 40
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=24.09 E-value=1.4e+02 Score=22.75 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=26.0
Q ss_pred cCCCeEEecCCcEEEEEEeCCCCceeEEeeeeEeEEEEEEEEecc
Q 036126 45 GDQNLIVLKEGKSVRISLDEHTGCGFKSRSTYQYAFFSTSVKLPA 89 (285)
Q Consensus 45 ~~~~v~~~~~G~~l~L~l~~~sga~i~Sk~~f~YG~fEariKlp~ 89 (285)
.++.|.+.-.+..|+++-.+..-.+-.....+.||.|+=++.||.
T Consensus 20 ~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~ 64 (87)
T cd06482 20 EPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPP 64 (87)
T ss_pred CHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCC
Confidence 344555544444677666543211100122578999999999997
No 41
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=21.25 E-value=2.8e+02 Score=22.08 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=31.0
Q ss_pred CCCceEEe-CCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEec
Q 036126 142 RGREERYS-LPFDPSENFHNYSILWTEKTTVFYVDYVPIRVTQK 184 (285)
Q Consensus 142 ~~~~~~~~-l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~ 184 (285)
.+.|++.. .+|.+ .+...-.|.=+++....+|||+++..+..
T Consensus 63 Wg~Eer~~~~pf~~-g~~F~l~i~~~~~~f~i~vng~~~~~F~~ 105 (127)
T cd00070 63 WGPEERSGGFPFQP-GQPFELTILVEEDKFQIFVNGQHFFSFPH 105 (127)
T ss_pred ecHhhccCCCCCCC-CCeEEEEEEEcCCEEEEEECCEeEEEecC
Confidence 34555543 45554 44558899999999999999999888764
Done!