BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036127
         (155 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
 pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
          Length = 768

 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 13/149 (8%)

Query: 2   SSISDIRLTNNRLSGEL-------PKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXX 54
           +S+  + L++N  SG +       PKN       L+ L+L  N F GKIP  LS C    
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNT------LQELYLQNNGFTGKIPPTLSNCSELV 421

Query: 55  XXXXXXXXXSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGV 114
                    SG IP  +G+L+ L+ + L  N L GEIP E+  +  LE L+L  N L G 
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481

Query: 115 FPAAIFNMSTLKVLMLINNSLSGSLPSRI 143
            P+ + N + L  + L NN L+G +P  I
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWI 510



 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 1/123 (0%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXX 60
           +S + D++L  N L GE+P+ +  Y+  L+ L LD N   G+IPS LS C          
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499

Query: 61  XXXSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
              +G IPK IG L  L  + L  N   G IP E+ +  +L  L L  N+  G  PAA+F
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559

Query: 121 NMS 123
             S
Sbjct: 560 KQS 562



 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 1/141 (0%)

Query: 3   SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXXX 62
           ++ ++ L NN  +G++P  + S    L +L L  N   G IPS+L               
Sbjct: 395 TLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453

Query: 63  XSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNM 122
             G IP+E+  +  L+ + L++N L GEIP  ++N  NL  + L  N L G  P  I  +
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513

Query: 123 STLKVLMLINNSLSGSLPSRI 143
             L +L L NNS SG++P+ +
Sbjct: 514 ENLAILKLSNNSFSGNIPAEL 534



 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 69/142 (48%), Gaps = 1/142 (0%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXX 61
           S +  + L+ N LSG +P ++GS L  L+ L L  NM  G+IP  L   K          
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476

Query: 62  XXSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFN 121
             +G IP  + N T L  I L  N+L GEIP  I  L NL  L L  N   G  PA + +
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536

Query: 122 MSTLKVLMLINNSLSGSLPSRI 143
             +L  L L  N  +G++P+ +
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAM 558



 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%)

Query: 64  SGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMS 123
           SG IPKEIG++  L  + L +N + G IP E+ +L  L  L L  N L G  P A+  ++
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704

Query: 124 TLKVLMLINNSLSGSLP 140
            L  + L NN+LSG +P
Sbjct: 705 MLTEIDLSNNNLSGPIP 721



 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 72/183 (39%), Gaps = 47/183 (25%)

Query: 7   IRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXXXXSGA 66
           I L+NNRL+GE+PK IG  L  L  L L  N F G IP+ L  C+            +G 
Sbjct: 495 ISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553

Query: 67  IPKEI--------------------------------GNLTMLKGIYLEY-NKLHGEIPH 93
           IP  +                                GNL   +GI  E  N+L    P 
Sbjct: 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613

Query: 94  EIANLL-------------NLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLP 140
            I + +             ++  L +  N+L G  P  I +M  L +L L +N +SGS+P
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673

Query: 141 SRI 143
             +
Sbjct: 674 DEV 676



 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 28/171 (16%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXX 60
           + S+  + L  N+ +GE+P  +      L  L L  N F+G +P     C          
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

Query: 61  XXXSGAIPKE-IGNLTMLKGIYLEYNKLHGEIPHEIANLL-------------------- 99
              SG +P + +  +  LK + L +N+  GE+P  + NL                     
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

Query: 100 -------NLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRI 143
                   L++L L  N   G  P  + N S L  L L  N LSG++PS +
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438



 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 25/110 (22%)

Query: 7   IRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXXXXSGA 66
           + ++ N LSG +PK IGS +PYL  L    N+ H  I                    SG+
Sbjct: 637 LDMSYNMLSGYIPKEIGS-MPYLFIL----NLGHNDI--------------------SGS 671

Query: 67  IPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFP 116
           IP E+G+L  L  + L  NKL G IP  ++ L  L ++ L  N L G  P
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721



 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 70/183 (38%), Gaps = 47/183 (25%)

Query: 7   IRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSK-----CKXXXXXXXXXX 61
           ++L+NN  SG +P  +G     L  L L+ N+F+G IP+A+ K                 
Sbjct: 519 LKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577

Query: 62  XXSGAIPKEI---GNLTMLKGIYLE----------------------------------- 83
             +  + KE    GNL   +GI  E                                   
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637

Query: 84  ---YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLP 140
              YN L G IP EI ++  L  L LG N + G  P  + ++  L +L L +N L G +P
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697

Query: 141 SRI 143
             +
Sbjct: 698 QAM 700



 Score = 38.9 bits (89), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 61/144 (42%), Gaps = 5/144 (3%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXX 61
           S++  + ++ N+LSG+  + I S    LK L +  N F G IP      K          
Sbjct: 223 SALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN 279

Query: 62  XXSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFP-AAI 119
             +G IP  + G    L G+ L  N  +G +P    +   LE L L  N   G  P   +
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339

Query: 120 FNMSTLKVLMLINNSLSGSLPSRI 143
             M  LKVL L  N  SG LP  +
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESL 363



 Score = 30.4 bits (67), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 25/87 (28%)

Query: 7   IRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXXXXSGA 66
           + L +N +SG +P  +G  L  L  L L  N   G+IP A+S                  
Sbjct: 661 LNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSA----------------- 702

Query: 67  IPKEIGNLTMLKGIYLEYNKLHGEIPH 93
                  LTML  I L  N L G IP 
Sbjct: 703 -------LTMLTEIDLSNNNLSGPIPE 722


>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
           Ectodomain
 pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
           Brassinolide
          Length = 772

 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 13/149 (8%)

Query: 2   SSISDIRLTNNRLSGEL-------PKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXX 54
           +S+  + L++N  SG +       PKN       L+ L+L  N F GKIP  LS C    
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNT------LQELYLQNNGFTGKIPPTLSNCSELV 418

Query: 55  XXXXXXXXXSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGV 114
                    SG IP  +G+L+ L+ + L  N L GEIP E+  +  LE L+L  N L G 
Sbjct: 419 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 478

Query: 115 FPAAIFNMSTLKVLMLINNSLSGSLPSRI 143
            P+ + N + L  + L NN L+G +P  I
Sbjct: 479 IPSGLSNCTNLNWISLSNNRLTGEIPKWI 507



 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 1/123 (0%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXX 60
           +S + D++L  N L GE+P+ +  Y+  L+ L LD N   G+IPS LS C          
Sbjct: 438 LSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 496

Query: 61  XXXSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
              +G IPK IG L  L  + L  N   G IP E+ +  +L  L L  N+  G  PAA+F
Sbjct: 497 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 556

Query: 121 NMS 123
             S
Sbjct: 557 KQS 559



 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 1/141 (0%)

Query: 3   SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXXX 62
           ++ ++ L NN  +G++P  + S    L +L L  N   G IPS+L               
Sbjct: 392 TLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450

Query: 63  XSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNM 122
             G IP+E+  +  L+ + L++N L GEIP  ++N  NL  + L  N L G  P  I  +
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510

Query: 123 STLKVLMLINNSLSGSLPSRI 143
             L +L L NNS SG++P+ +
Sbjct: 511 ENLAILKLSNNSFSGNIPAEL 531



 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 69/142 (48%), Gaps = 1/142 (0%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXX 61
           S +  + L+ N LSG +P ++GS L  L+ L L  NM  G+IP  L   K          
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 473

Query: 62  XXSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFN 121
             +G IP  + N T L  I L  N+L GEIP  I  L NL  L L  N   G  PA + +
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533

Query: 122 MSTLKVLMLINNSLSGSLPSRI 143
             +L  L L  N  +G++P+ +
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAM 555



 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%)

Query: 64  SGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMS 123
           SG IPKEIG++  L  + L +N + G IP E+ +L  L  L L  N L G  P A+  ++
Sbjct: 642 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 701

Query: 124 TLKVLMLINNSLSGSLP 140
            L  + L NN+LSG +P
Sbjct: 702 MLTEIDLSNNNLSGPIP 718



 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 72/183 (39%), Gaps = 47/183 (25%)

Query: 7   IRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXXXXSGA 66
           I L+NNRL+GE+PK IG  L  L  L L  N F G IP+ L  C+            +G 
Sbjct: 492 ISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550

Query: 67  IPKEI--------------------------------GNLTMLKGIYLEY-NKLHGEIPH 93
           IP  +                                GNL   +GI  E  N+L    P 
Sbjct: 551 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 610

Query: 94  EIANLL-------------NLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLP 140
            I + +             ++  L +  N+L G  P  I +M  L +L L +N +SGS+P
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670

Query: 141 SRI 143
             +
Sbjct: 671 DEV 673



 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 28/171 (16%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXX 60
           + S+  + L  N+ +GE+P  +      L  L L  N F+G +P     C          
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324

Query: 61  XXXSGAIPKE-IGNLTMLKGIYLEYNKLHGEIPHEIANLL-------------------- 99
              SG +P + +  +  LK + L +N+  GE+P  + NL                     
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384

Query: 100 -------NLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRI 143
                   L++L L  N   G  P  + N S L  L L  N LSG++PS +
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435



 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 25/110 (22%)

Query: 7   IRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXXXXSGA 66
           + ++ N LSG +PK IGS +PYL  L    N+ H  I                    SG+
Sbjct: 634 LDMSYNMLSGYIPKEIGS-MPYLFIL----NLGHNDI--------------------SGS 668

Query: 67  IPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFP 116
           IP E+G+L  L  + L  NKL G IP  ++ L  L ++ L  N L G  P
Sbjct: 669 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718



 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 70/183 (38%), Gaps = 47/183 (25%)

Query: 7   IRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSK-----CKXXXXXXXXXX 61
           ++L+NN  SG +P  +G     L  L L+ N+F+G IP+A+ K                 
Sbjct: 516 LKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 574

Query: 62  XXSGAIPKEI---GNLTMLKGIYLE----------------------------------- 83
             +  + KE    GNL   +GI  E                                   
Sbjct: 575 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 634

Query: 84  ---YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLP 140
              YN L G IP EI ++  L  L LG N + G  P  + ++  L +L L +N L G +P
Sbjct: 635 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 694

Query: 141 SRI 143
             +
Sbjct: 695 QAM 697



 Score = 38.5 bits (88), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 61/144 (42%), Gaps = 5/144 (3%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXX 61
           S++  + ++ N+LSG+  + I S    LK L +  N F G IP      K          
Sbjct: 220 SALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN 276

Query: 62  XXSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFP-AAI 119
             +G IP  + G    L G+ L  N  +G +P    +   LE L L  N   G  P   +
Sbjct: 277 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 336

Query: 120 FNMSTLKVLMLINNSLSGSLPSRI 143
             M  LKVL L  N  SG LP  +
Sbjct: 337 LKMRGLKVLDLSFNEFSGELPESL 360



 Score = 30.4 bits (67), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 25/87 (28%)

Query: 7   IRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXXXXSGA 66
           + L +N +SG +P  +G  L  L  L L  N   G+IP A+S                  
Sbjct: 658 LNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSA----------------- 699

Query: 67  IPKEIGNLTMLKGIYLEYNKLHGEIPH 93
                  LTML  I L  N L G IP 
Sbjct: 700 -------LTMLTEIDLSNNNLSGPIPE 719


>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
           Inhibiting Protein), A Leucine Rich Repeat Protein
           Involved In Plant Defense
          Length = 313

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 2/117 (1%)

Query: 26  LPYLKALFLDK-NMFHGKIPSALSKCKXXXXXXXXXXXXSGAIPKEIGNLTMLKGIYLEY 84
           LPYL  L++   N   G IP A++K              SGAIP  +  +  L  +   Y
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134

Query: 85  NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLIN-NSLSGSLP 140
           N L G +P  I++L NL  +    N + G  P +  + S L   M I+ N L+G +P
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191



 Score = 39.3 bits (90), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 67  IPKEIGNLTMLKGIYLE-YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTL 125
           IP  + NL  L  +Y+   N L G IP  IA L  L  L +    + G  P  +  + TL
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127

Query: 126 KVLMLINNSLSGSLPSRIDLSLP 148
             L    N+LSG+LP  I  SLP
Sbjct: 128 VTLDFSYNALSGTLPPSIS-SLP 149



 Score = 35.8 bits (81), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 7/145 (4%)

Query: 7   IRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXXXXSGA 66
           I    NR+SG +P + GS+     ++ + +N   GKIP   +                G 
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD 212

Query: 67  IPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLK 126
                G+    + I+L  N L  ++  ++    NL  L L  N + G  P  +  +  L 
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 127 VLMLINNSLSGSLP-----SRIDLS 146
            L +  N+L G +P      R D+S
Sbjct: 272 SLNVSFNNLCGEIPQGGNLQRFDVS 296


>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
           Rbc36 In Complex With H-Trisaccharide
          Length = 229

 Score = 32.0 bits (71), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 48  SKCKXXXXXXXXXXXXSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLG 107
           S+C               ++P  I   T  + +YL  N++    P    +L+NL++L LG
Sbjct: 15  SQCSCSGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLG 72

Query: 108 MNILVGVFPAAIFN-MSTLKVLMLINNSLSGSLPSRI 143
            N L G  P  +F+ ++ L VL L  N L+  LPS +
Sbjct: 73  SNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAV 107


>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
 pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
          Length = 193

 Score = 30.8 bits (68), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 33/70 (47%)

Query: 67  IPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLK 126
           +PKE+ N   L  I L  N++        +N+  L  L+L  N L  + P     + +L+
Sbjct: 46  VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105

Query: 127 VLMLINNSLS 136
           +L L  N +S
Sbjct: 106 LLSLHGNDIS 115



 Score = 28.1 bits (61), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 6/115 (5%)

Query: 7   IRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXXXXSGA 66
           +R +N  L   LPK I   +     L+LD N F   +P  LS  K            S  
Sbjct: 15  VRCSNKGLK-VLPKGIPRDV---TELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTL 69

Query: 67  IPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFN 121
             +   N+T L  + L YN+L    P     L +L  L L  N  + V P   FN
Sbjct: 70  SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFN 123


>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
           Receptors B61
          Length = 177

 Score = 30.8 bits (68), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 74  LTMLKGIYLEYNKLHGEIPHEIAN-LLNLEDLVLGMNILVGVFPAAIFN-MSTLKVLMLI 131
           LT L  +YL  NKL   +P+ + + L  L++L L  N L  V P  IF+ +++L+ + L 
Sbjct: 75  LTKLTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLH 132

Query: 132 NNSLSGSLPSRID 144
            N    S P RID
Sbjct: 133 TNPWDCSCP-RID 144


>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
          Length = 477

 Score = 30.4 bits (67), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 66  AIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTL 125
           A+P+ I   T L  + L  N++      E A+  +LE+L L  NI+  V P A  N+  L
Sbjct: 25  AVPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 126 KVLMLINNSL 135
           + L L +N L
Sbjct: 83  RTLGLRSNRL 92


>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
           Tlr5 In Complex With Salmonella Flagellin
 pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
           Tlr5 In Complex With Salmonella Flagellin
          Length = 455

 Score = 28.9 bits (63), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 73  NLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFN-MSTLKVLMLI 131
           NL  L+ + L YN +          L NL++L L  N L  V P  IF+ +++L+ + L 
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV-PDGIFDRLTSLQKIWLH 403

Query: 132 NNSLSGSLPSRID 144
            N    S P RID
Sbjct: 404 TNPWDCSCP-RID 415


>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
           Receptors A29
          Length = 270

 Score = 28.5 bits (62), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 9/138 (6%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXX 61
           +    + L +N+LS  LP      L  L+ L+L+ N     +P+ + K            
Sbjct: 37  ADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTD 94

Query: 62  XXSGAIPKEIG---NLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAA 118
               A+P  IG    L  L  + L+ N+L    P    +L  L  L LG N L  + P  
Sbjct: 95  NKLQALP--IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL-PKG 151

Query: 119 IFN-MSTLKVLMLINNSL 135
           +F+ +++LK L L NN L
Sbjct: 152 VFDKLTSLKELRLYNNQL 169



 Score = 26.6 bits (57), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 69  KEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFN-MSTLKV 127
           K    LT L+ +YL  NKL          L NLE L +  N L  + P  +F+ +  L  
Sbjct: 55  KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAE 113

Query: 128 LMLINNSLSGSLPSRI 143
           L L  N L  SLP R+
Sbjct: 114 LRLDRNQLK-SLPPRV 128


>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
          Length = 332

 Score = 28.1 bits (61), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 12/155 (7%)

Query: 2   SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFH--GKIPSALSKCKXXXXXXXX 59
           SS+ ++R+ +NR+  ++PK + S L  +  + +  N     G  P A    K        
Sbjct: 123 SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 60  XXXXSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAI 119
                  IPK++     L  ++L++NK+      ++     L  L LG N +  +   ++
Sbjct: 182 AKLT--GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237

Query: 120 FNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154
             + TL+ L L NN L     SR+   LP +++L 
Sbjct: 238 SFLPTLRELHLDNNKL-----SRVPAGLPDLKLLQ 267


>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
           Vlra.R5.1
 pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
           Vlra.R5.1
          Length = 251

 Score = 28.1 bits (61), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 50/138 (36%), Gaps = 25/138 (18%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXX 60
           ++ +  + L NN+L+  LP  +  +L  L  L+L  N     +PS +             
Sbjct: 82  LTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGV------------- 126

Query: 61  XXXSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
                        LT LK + L  N+L          L NL+ L L  N L  V   A  
Sbjct: 127 ----------FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176

Query: 121 NMSTLKVLMLINNSLSGS 138
            +  L+ + L  N    S
Sbjct: 177 RLGKLQTITLFGNQFDCS 194


>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
           Vlra.R2.1 In Complex With Hen Egg Lysozyme
          Length = 251

 Score = 28.1 bits (61), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 25/146 (17%)

Query: 1   MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXX 60
           ++ +  + L NN+L+  LP  +  +L  L  L+L  N     +PS +             
Sbjct: 82  LTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGV------------- 126

Query: 61  XXXSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF 120
                        LT LK + L  N+L          L NL+ L L  N L  V   A  
Sbjct: 127 ----------FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176

Query: 121 NMSTLKVLMLINNSLSGSLPSRIDLS 146
            +  L+ + L  N    S    + LS
Sbjct: 177 RLGKLQTITLFGNQFDCSRCETLYLS 202


>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
 pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
          Length = 272

 Score = 27.7 bits (60), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 9   LTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKXXXXXXXXXXXXSGAIP 68
           LT N+L   LP  +   L  LK L L +N     +P  +                  ++P
Sbjct: 92  LTGNQLQS-LPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLP 149

Query: 69  KEI-GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFN-MSTLK 126
           K +   LT L  + L YN+L          L  L+DL L  N L  V P  +F+ +++L+
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQ 208

Query: 127 VLMLINNSLSGSLP 140
            + L +N    + P
Sbjct: 209 YIWLHDNPWDCTCP 222


>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
          Length = 727

 Score = 27.7 bits (60), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 67  IPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLK 126
           +P EI NL+ L+ + L +N+L   +P E+ +   L+      N +V   P    N+  L+
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQ 319

Query: 127 VLMLINNSL 135
            L +  N L
Sbjct: 320 FLGVEGNPL 328


>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
           Monocytogenes Str. 4b F2365 At 1.91 A Resolution
 pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
           Monocytogenes Str. 4b F2365 At 1.91 A Resolution
          Length = 347

 Score = 27.3 bits (59), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 71  IGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAA 118
           + NL+ L  ++L  N+L  E    I  L NL  L L  N +  + P A
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLA 330


>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
           Complex
 pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
           Complex
          Length = 279

 Score = 26.6 bits (57), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 71  IGNLTMLKGIYLEYNKLHG-EIPHEIANLLNLEDLVLGMNILVGVF 115
           IG+L  LK + + +N +   ++P   +NL NLE L L  N +  ++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167


>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
          Length = 278

 Score = 26.6 bits (57), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 71  IGNLTMLKGIYLEYNKLHG-EIPHEIANLLNLEDLVLGMNILVGVF 115
           IG+L  LK + + +N +   ++P   +NL NLE L L  N +  ++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166


>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
          Length = 278

 Score = 26.6 bits (57), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 71  IGNLTMLKGIYLEYNKLHG-EIPHEIANLLNLEDLVLGMNILVGVF 115
           IG+L  LK + + +N +   ++P   +NL NLE L L  N +  ++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166


>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
           Hagfish Vlrb.61
 pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
           Hybrid-Md-2-Eritoran Complex
 pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
           Hybrid-Md-2-Eritoran Complex
          Length = 276

 Score = 26.6 bits (57), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 71  IGNLTMLKGIYLEYNKLHG-EIPHEIANLLNLEDLVLGMNILVGVF 115
           IG+L  LK + + +N +   ++P   +NL NLE L L  N +  ++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165


>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
          Length = 279

 Score = 26.6 bits (57), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 71  IGNLTMLKGIYLEYNKLHG-EIPHEIANLLNLEDLVLGMNILVGVF 115
           IG+L  LK + + +N +   ++P   +NL NLE L L  N +  ++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167


>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
          Length = 597

 Score = 25.8 bits (55), Expect = 9.9,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 77  LKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIF-NMSTLKVLMLINNSL 135
           ++ +Y+ +N +    PH   N+  L  LVL  N L  + P  IF N   L  L + NN+L
Sbjct: 101 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNL 159


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.139    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,875,264
Number of Sequences: 62578
Number of extensions: 131109
Number of successful extensions: 393
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 67
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)