Query 036127
Match_columns 155
No_of_seqs 120 out of 2009
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 09:42:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 8.4E-21 1.8E-25 146.9 11.5 148 4-153 142-289 (968)
2 PLN00113 leucine-rich repeat r 99.8 1.9E-20 4.1E-25 145.0 11.4 151 2-154 164-314 (968)
3 KOG4194 Membrane glycoprotein 99.8 6.5E-20 1.4E-24 130.5 0.8 153 1-155 268-423 (873)
4 KOG0617 Ras suppressor protein 99.8 6.4E-21 1.4E-25 117.2 -4.2 142 3-151 34-176 (264)
5 KOG0617 Ras suppressor protein 99.7 2.9E-20 6.3E-25 114.3 -3.8 137 1-143 55-192 (264)
6 KOG4194 Membrane glycoprotein 99.7 8.8E-18 1.9E-22 119.9 5.7 149 4-155 80-228 (873)
7 KOG0444 Cytoskeletal regulator 99.5 2.1E-16 4.5E-21 114.3 -3.2 147 2-155 222-369 (1255)
8 KOG0444 Cytoskeletal regulator 99.5 1.3E-15 2.8E-20 110.3 -0.1 148 3-155 79-252 (1255)
9 KOG0472 Leucine-rich repeat pr 99.5 7.6E-16 1.6E-20 105.8 -2.0 108 43-154 427-534 (565)
10 KOG4237 Extracellular matrix p 99.5 8.1E-15 1.8E-19 100.4 1.5 60 4-64 69-129 (498)
11 PF14580 LRR_9: Leucine-rich r 99.5 8.2E-14 1.8E-18 87.5 5.2 121 28-154 20-146 (175)
12 KOG0472 Leucine-rich repeat pr 99.5 5.9E-16 1.3E-20 106.4 -5.1 140 4-153 162-302 (565)
13 PF14580 LRR_9: Leucine-rich r 99.4 2.8E-13 6E-18 85.1 5.2 125 3-131 20-148 (175)
14 KOG0532 Leucine-rich repeat (L 99.4 6.5E-15 1.4E-19 105.0 -4.1 130 5-143 124-253 (722)
15 PLN03150 hypothetical protein; 99.4 3.4E-12 7.4E-17 95.1 9.5 107 29-135 420-527 (623)
16 KOG0618 Serine/threonine phosp 99.4 2.3E-14 5E-19 106.9 -2.3 125 27-155 359-483 (1081)
17 PLN03210 Resistant to P. syrin 99.4 8.8E-12 1.9E-16 98.5 11.4 80 3-85 612-691 (1153)
18 PLN03150 hypothetical protein; 99.4 4.1E-12 8.9E-17 94.6 9.0 105 5-110 421-526 (623)
19 cd00116 LRR_RI Leucine-rich re 99.4 2.3E-13 5E-18 93.8 1.7 13 3-15 82-94 (319)
20 PRK15370 E3 ubiquitin-protein 99.3 4.3E-12 9.4E-17 95.6 7.5 77 2-88 220-296 (754)
21 KOG0618 Serine/threonine phosp 99.3 8.7E-14 1.9E-18 103.9 -1.6 128 3-135 360-488 (1081)
22 PRK15370 E3 ubiquitin-protein 99.3 4.8E-12 1E-16 95.4 7.3 98 3-113 200-297 (754)
23 KOG4237 Extracellular matrix p 99.3 1.5E-13 3.3E-18 94.3 -1.9 142 6-152 50-192 (498)
24 cd00116 LRR_RI Leucine-rich re 99.3 8E-13 1.7E-17 91.1 1.6 132 4-136 110-263 (319)
25 PLN03210 Resistant to P. syrin 99.3 8.8E-11 1.9E-15 93.0 11.8 126 3-134 590-715 (1153)
26 PF13855 LRR_8: Leucine rich r 99.2 9E-12 1.9E-16 65.3 3.7 60 2-62 1-60 (61)
27 KOG0532 Leucine-rich repeat (L 99.2 9.2E-13 2E-17 94.3 -0.3 143 3-155 99-241 (722)
28 PRK15387 E3 ubiquitin-protein 99.2 4.4E-11 9.6E-16 90.2 7.6 70 76-155 383-452 (788)
29 KOG1259 Nischarin, modulator o 99.2 2.8E-12 6E-17 85.9 -0.1 130 3-140 285-415 (490)
30 COG4886 Leucine-rich repeat (L 99.2 2.2E-11 4.7E-16 86.5 3.8 143 4-155 118-284 (394)
31 PF13855 LRR_8: Leucine rich r 99.2 5.1E-11 1.1E-15 62.4 4.2 61 75-135 1-61 (61)
32 PRK15387 E3 ubiquitin-protein 99.2 6.7E-11 1.4E-15 89.3 6.0 84 51-143 382-465 (788)
33 COG4886 Leucine-rich repeat (L 99.1 4.5E-11 9.8E-16 84.9 3.8 125 6-136 97-222 (394)
34 KOG1259 Nischarin, modulator o 99.0 6.5E-11 1.4E-15 79.5 -0.6 121 26-154 283-405 (490)
35 KOG3207 Beta-tubulin folding c 98.9 6.2E-10 1.3E-14 77.7 0.9 135 1-136 145-314 (505)
36 KOG3207 Beta-tubulin folding c 98.8 7.4E-10 1.6E-14 77.4 0.6 107 2-109 121-232 (505)
37 KOG4658 Apoptotic ATPase [Sign 98.8 7.4E-09 1.6E-13 79.8 4.7 126 5-134 526-653 (889)
38 KOG1909 Ran GTPase-activating 98.8 5.9E-09 1.3E-13 71.0 3.1 135 2-136 92-254 (382)
39 KOG4579 Leucine-rich repeat (L 98.6 3.6E-09 7.7E-14 63.4 -1.0 82 4-88 55-136 (177)
40 KOG4658 Apoptotic ATPase [Sign 98.6 6.5E-08 1.4E-12 74.7 4.5 107 2-110 545-653 (889)
41 KOG1644 U2-associated snRNP A' 98.6 2.5E-07 5.4E-12 58.9 6.2 124 6-133 23-150 (233)
42 KOG1859 Leucine-rich repeat pr 98.6 4.7E-10 1E-14 83.0 -6.9 129 4-140 166-295 (1096)
43 PF13306 LRR_5: Leucine rich r 98.5 1E-06 2.3E-11 52.8 7.3 128 17-151 2-129 (129)
44 KOG1909 Ran GTPase-activating 98.5 4.4E-08 9.6E-13 66.9 0.9 133 3-135 158-310 (382)
45 KOG2120 SCF ubiquitin ligase, 98.5 4.5E-09 9.7E-14 70.6 -4.0 58 96-155 310-370 (419)
46 KOG4579 Leucine-rich repeat (L 98.4 7.4E-09 1.6E-13 62.0 -2.9 108 29-141 29-140 (177)
47 PF12799 LRR_4: Leucine Rich r 98.4 3.9E-07 8.5E-12 44.1 3.1 37 2-40 1-37 (44)
48 KOG0531 Protein phosphatase 1, 98.4 7.6E-08 1.7E-12 69.0 0.8 104 2-111 95-198 (414)
49 KOG3665 ZYG-1-like serine/thre 98.4 5.5E-08 1.2E-12 73.3 -0.1 147 3-151 123-278 (699)
50 KOG1859 Leucine-rich repeat pr 98.4 2.9E-09 6.4E-14 79.0 -6.7 102 29-137 166-268 (1096)
51 KOG0531 Protein phosphatase 1, 98.3 7.8E-08 1.7E-12 69.0 -0.3 126 3-136 73-199 (414)
52 PF12799 LRR_4: Leucine Rich r 98.3 9.1E-07 2E-11 42.9 3.4 34 77-111 3-36 (44)
53 KOG1644 U2-associated snRNP A' 98.3 3.8E-06 8.2E-11 53.7 6.1 121 29-154 21-146 (233)
54 PF13306 LRR_5: Leucine rich r 98.2 5.6E-06 1.2E-10 49.6 6.3 118 2-126 12-129 (129)
55 KOG2982 Uncharacterized conser 98.1 1.2E-06 2.6E-11 59.2 2.1 83 2-85 71-156 (418)
56 KOG3665 ZYG-1-like serine/thre 98.0 1E-05 2.2E-10 61.4 4.1 111 1-114 147-265 (699)
57 COG5238 RNA1 Ran GTPase-activa 97.9 1.8E-05 3.8E-10 53.2 4.1 135 1-136 91-255 (388)
58 PRK15386 type III secretion pr 97.8 0.00037 8E-09 49.8 9.5 70 2-85 52-122 (426)
59 KOG2123 Uncharacterized conser 97.8 7.6E-07 1.6E-11 59.6 -3.5 98 3-105 20-123 (388)
60 KOG2120 SCF ubiquitin ligase, 97.6 1E-05 2.2E-10 54.9 -0.3 61 71-133 309-373 (419)
61 KOG2123 Uncharacterized conser 97.6 2.1E-06 4.5E-11 57.6 -3.7 99 52-154 20-123 (388)
62 KOG2739 Leucine-rich acidic nu 97.6 3.9E-05 8.6E-10 50.8 2.2 87 25-113 41-130 (260)
63 KOG2739 Leucine-rich acidic nu 97.6 4.7E-05 1E-09 50.5 2.0 102 50-154 42-149 (260)
64 PRK15386 type III secretion pr 97.5 0.001 2.2E-08 47.7 7.7 62 25-93 50-112 (426)
65 COG5238 RNA1 Ran GTPase-activa 97.3 0.00028 6E-09 47.6 3.1 43 46-88 87-133 (388)
66 KOG2982 Uncharacterized conser 96.9 0.00069 1.5E-08 46.4 1.9 84 50-133 70-156 (418)
67 PF00560 LRR_1: Leucine Rich R 96.5 0.0014 2.9E-08 26.5 0.8 17 125-142 2-18 (22)
68 PF13504 LRR_7: Leucine rich r 96.1 0.0046 1E-07 23.3 1.3 13 3-15 2-14 (17)
69 smart00369 LRR_TYP Leucine-ric 96.0 0.007 1.5E-07 25.4 1.9 21 2-23 2-22 (26)
70 smart00370 LRR Leucine-rich re 96.0 0.007 1.5E-07 25.4 1.9 21 2-23 2-22 (26)
71 KOG3864 Uncharacterized conser 93.9 0.0081 1.8E-07 38.9 -1.4 85 51-135 101-188 (221)
72 KOG3864 Uncharacterized conser 93.6 0.009 1.9E-07 38.7 -1.5 83 28-110 102-187 (221)
73 KOG1947 Leucine rich repeat pr 93.1 0.026 5.7E-07 41.2 0.0 111 25-135 186-307 (482)
74 KOG0473 Leucine-rich repeat pr 92.5 0.0019 4.2E-08 42.8 -5.8 84 26-112 41-124 (326)
75 PF13516 LRR_6: Leucine Rich r 92.5 0.035 7.6E-07 22.7 -0.0 14 2-15 2-15 (24)
76 KOG1947 Leucine rich repeat pr 92.3 0.056 1.2E-06 39.5 0.8 130 2-131 188-329 (482)
77 KOG0473 Leucine-rich repeat pr 92.0 0.0012 2.6E-08 43.7 -7.1 85 49-136 40-124 (326)
78 smart00364 LRR_BAC Leucine-ric 89.1 0.3 6.6E-06 20.5 1.2 18 123-141 2-19 (26)
79 KOG4341 F-box protein containi 88.9 0.13 2.9E-06 37.1 0.2 34 100-133 402-436 (483)
80 KOG4341 F-box protein containi 87.5 0.13 2.8E-06 37.2 -0.6 131 24-154 291-432 (483)
81 smart00365 LRR_SD22 Leucine-ri 87.3 0.53 1.1E-05 19.8 1.5 13 28-40 3-15 (26)
82 KOG3763 mRNA export factor TAP 85.4 0.61 1.3E-05 35.0 1.9 61 3-64 219-283 (585)
83 smart00368 LRR_RI Leucine rich 80.9 1.5 3.2E-05 18.6 1.5 14 123-136 2-15 (28)
84 smart00367 LRR_CC Leucine-rich 69.3 3.5 7.7E-05 16.9 1.2 12 1-12 1-12 (26)
85 TIGR00864 PCC polycystin catio 59.1 7.5 0.00016 35.4 2.1 32 8-40 1-32 (2740)
86 KOG3763 mRNA export factor TAP 55.3 9.8 0.00021 29.0 2.0 12 74-85 243-254 (585)
87 TIGR00864 PCC polycystin catio 41.9 20 0.00043 33.0 2.0 32 33-64 1-32 (2740)
88 smart00446 LRRcap occurring C- 33.6 15 0.00032 15.5 0.1 10 145-154 10-19 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=8.4e-21 Score=146.87 Aligned_cols=148 Identities=44% Similarity=0.689 Sum_probs=66.7
Q ss_pred ccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127 4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83 (155)
Q Consensus 4 l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 83 (155)
|+.|++++|.+++.+|..+. .+++|++|++++|.+.+..|..+..+++|++|++++|.+....|..++.+++|+.|+++
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIG-SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCEEECcCCcccccCChHHh-cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 34444444444433343333 34445555555444444444444444444444444444443344444444444444444
Q ss_pred cccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCcccee
Q 036127 84 YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL 153 (155)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l 153 (155)
+|.+.+..|..+..+++|+++++.+|.+++..|..+..+++|+.+++++|.+.+.+|..+ ..+++|++|
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L 289 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISL 289 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEE
Confidence 444444444444444444444444444444444444444444444444444443444333 334444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=1.9e-20 Score=144.96 Aligned_cols=151 Identities=42% Similarity=0.636 Sum_probs=94.7
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
++|+.|++++|.+.+.+|..+. .+++|++|++++|.+.+..|..+..+++|+.|++++|.+....|..++.+++|+.|+
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 5677777777777656666555 667777777777776666666666666677777766666655666666666666666
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 154 (155)
+++|.+.+..|..+..+++|+.+++.+|.+.+..|..+..+++|+.+++++|.+.+.+|..+ ..+++|++|+
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~ 314 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV-IQLQNLEILH 314 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH-cCCCCCcEEE
Confidence 66666665566666666666666666666655555555555555555555555554555444 4455555444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=6.5e-20 Score=130.55 Aligned_cols=153 Identities=24% Similarity=0.248 Sum_probs=122.5
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
|.++++|+++.|+++ .+..++.-+++.|+.|+++.|.|....+++...+++|++|+++.|.++...+..|..+..|+.|
T Consensus 268 l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred ecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence 356778888888888 6666655478888888888888877667777778888888888888886667778888888888
Q ss_pred EeecccccccCchhhhCCCCCceEEeeCccccccCC---ccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFP---AAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+++.|.++......+..+++|+.|++++|.++..+. .+|.++++|+.|++.+|.++ .+|...|.+++.|++|||
T Consensus 347 nLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 347 NLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDL 423 (873)
T ss_pred cccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecC
Confidence 888888875555667778888889998888765443 45778999999999999998 999888899999999986
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.76 E-value=6.4e-21 Score=117.15 Aligned_cols=142 Identities=30% Similarity=0.511 Sum_probs=84.9
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
+++.|.++.|.++ .+|+.+. .+.+++.|++.+|+++ ..|..++.++.|+.+.+..|++. ..|..|+.++.|+.||+
T Consensus 34 ~ITrLtLSHNKl~-~vppnia-~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIA-ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhcccCcee-ecCCcHH-Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 4556666777777 6777766 5677777777777776 66666777777777777766665 56666777777777777
Q ss_pred ecccccc-cCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccc
Q 036127 83 EYNKLHG-EIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVE 151 (155)
Q Consensus 83 ~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~ 151 (155)
++|++.. .+|..+..+..|+.+.+++|.+.- +|..++.+++|+.+.+.+|.+- .+|.++ +.++.|+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll-~lpkei-g~lt~lr 176 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLL-SLPKEI-GDLTRLR 176 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchh-hCcHHH-HHHHHHH
Confidence 7666542 334444444455555555554433 3444455555555555555544 455544 4444433
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=2.9e-20 Score=114.29 Aligned_cols=137 Identities=30% Similarity=0.534 Sum_probs=126.1
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCC-CcchhhhCCCcccE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSG-AIPKEIGNLTMLKG 79 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~ 79 (155)
+.+|+.|++.+|+++ ++|..+. .++++++|++..|.+. ..|.+|+.++.|+.+|+..|.+.. ..|+.|..+..|+.
T Consensus 55 l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra 131 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA 131 (264)
T ss_pred hhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence 367899999999999 9999998 8999999999999998 889999999999999999988763 56888889999999
Q ss_pred EEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCccc
Q 036127 80 IYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRI 143 (155)
Q Consensus 80 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 143 (155)
|.+++|.+. .+|..++.+.+|+.+.+.+|.+.. .|..++.+.+|+.+.+++|+++ .+|.++
T Consensus 132 lyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl~-vlppel 192 (264)
T KOG0617|consen 132 LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLT-VLPPEL 192 (264)
T ss_pred HHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccceee-ecChhh
Confidence 999999998 899999999999999999999888 6888999999999999999999 888776
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.72 E-value=8.8e-18 Score=119.88 Aligned_cols=149 Identities=26% Similarity=0.359 Sum_probs=126.1
Q ss_pred ccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127 4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83 (155)
Q Consensus 4 l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 83 (155)
.+.|++++|.+. .+....+..+++|+.+.+..|.++ .+|.......+++.|++..|.+...-...+..++.|+.+|++
T Consensus 80 t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 80 TQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 456899999998 777776678999999999999998 777766666779999999999986667778889999999999
Q ss_pred cccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 84 YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
.|.++..--..+..-.++++|++.+|+|+......|..+.+|..+.+++|+++ .+|...|.++++|+.|||
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhc
Confidence 99988443344555578999999999999987788999999999999999999 888888788999998885
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.54 E-value=2.1e-16 Score=114.32 Aligned_cols=147 Identities=31% Similarity=0.445 Sum_probs=86.6
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
.+|+.++++.|.+. .+|..+. .+++|+.|++++|.|+ .+.-....+.++++|.++.|+++ ..|+.+..++.|+.|.
T Consensus 222 ~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLY 297 (1255)
T ss_pred hhhhhccccccCCC-cchHHHh-hhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHH
Confidence 34555666666666 6666665 5666666666666665 44444445555666666666655 5555555555666555
Q ss_pred eecccccc-cCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 82 LEYNKLHG-EIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 82 l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
..+|+++. -+|+.++.+.+|+.+...+|.+. .+|..++.|..|+.|.++.|++. .+|..| --++-|.+||+
T Consensus 298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaI-HlL~~l~vLDl 369 (1255)
T KOG0444|consen 298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAI-HLLPDLKVLDL 369 (1255)
T ss_pred hccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhh-hhcCCcceeec
Confidence 55555542 23555555555555555555442 25666677777777777777776 667666 44666666664
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.52 E-value=1.3e-15 Score=110.32 Aligned_cols=148 Identities=27% Similarity=0.352 Sum_probs=76.3
Q ss_pred CccEEEccCCcccc-cCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 3 SISDIRLTNNRLSG-ELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 3 ~l~~l~l~~~~~~~-~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
.|+.++++.|++.. .+|++++ .+.-|++|++++|+++ .+|..+..-+++-.|.++.|.+....-+.|-+++-|-+|+
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhHHHhhhccccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence 34445555554432 3555555 4555555555555555 4555555555555555555555433223344444444555
Q ss_pred eecccccccCchhhhCCCCCceEEeeCcccc-------------------------ccCCccccCCCCCcEEEccCCccc
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILV-------------------------GVFPAAIFNMSTLKVLMLINNSLS 136 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-------------------------~~~~~~~~~~~~L~~l~l~~n~~~ 136 (155)
++.|.+. .+|+.+.++..|++|.+++|++. .-+|..+..+.+|..++++.|.+.
T Consensus 157 LS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 157 LSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred cccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence 5555544 44555544444555544444321 114445555556666666666666
Q ss_pred CCCCcccccCCCccceecC
Q 036127 137 GSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 137 ~~~~~~~~~~~~~L~~l~l 155 (155)
.+|.++ -++++|+.|+|
T Consensus 236 -~vPecl-y~l~~LrrLNL 252 (1255)
T KOG0444|consen 236 -IVPECL-YKLRNLRRLNL 252 (1255)
T ss_pred -cchHHH-hhhhhhheecc
Confidence 666666 55666665553
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.51 E-value=7.6e-16 Score=105.85 Aligned_cols=108 Identities=31% Similarity=0.494 Sum_probs=54.9
Q ss_pred CCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCC
Q 036127 43 IPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNM 122 (155)
Q Consensus 43 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 122 (155)
+|..+..+++|..|++++|.+. ..|..++.+..|+.++++.|.+. ..|..+..+..++++-.++|++..+.++.+..+
T Consensus 427 v~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred chHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 3333444555555555555554 44555555555566666555554 444444444444444444444444333445555
Q ss_pred CCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127 123 STLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 123 ~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 154 (155)
.+|.++++++|.+. .+|..+ ++|++|++|+
T Consensus 505 ~nL~tLDL~nNdlq-~IPp~L-gnmtnL~hLe 534 (565)
T KOG0472|consen 505 RNLTTLDLQNNDLQ-QIPPIL-GNMTNLRHLE 534 (565)
T ss_pred hhcceeccCCCchh-hCChhh-ccccceeEEE
Confidence 55555555555555 555544 5555555544
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.48 E-value=8.1e-15 Score=100.45 Aligned_cols=60 Identities=30% Similarity=0.314 Sum_probs=47.2
Q ss_pred ccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEccc-CcCC
Q 036127 4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF-NNLS 64 (155)
Q Consensus 4 l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~-~~~~ 64 (155)
...+.+..|+|+ .+|+.+|..+++|+.|++++|.|+.+.|++|.+++.+..+.+-+ |.++
T Consensus 69 tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 69 TVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred ceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 456888899999 89999998899999999999999877787787776665554444 5554
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.47 E-value=8.2e-14 Score=87.51 Aligned_cols=121 Identities=27% Similarity=0.399 Sum_probs=33.5
Q ss_pred CccEEEccCccccccCCcccc-CCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhh-hCCCCCceEE
Q 036127 28 YLKALFLDKNMFHGKIPSALS-KCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEI-ANLLNLEDLV 105 (155)
Q Consensus 28 ~l~~l~l~~n~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~ 105 (155)
.++.|++.+|.|+ .+ ..+. .+.+|+.|++++|.+.. . ..+..++.|+.|++++|.++. +...+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-cc-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence 4555666666655 22 1232 34556666666666552 2 234455566666666666652 22222 2455666666
Q ss_pred eeCccccccCC-ccccCCCCCcEEEccCCcccCCCCc---ccccCCCccceec
Q 036127 106 LGMNILVGVFP-AAIFNMSTLKVLMLINNSLSGSLPS---RIDLSLPTVEVLD 154 (155)
Q Consensus 106 l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~~~~~L~~l~ 154 (155)
+++|++...-. ..+..+++|+.+++.+|+++ ..+. .+...+|+|+.||
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEET
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeC
Confidence 66665544211 23445566666666666665 3232 1224456666555
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.47 E-value=5.9e-16 Score=106.37 Aligned_cols=140 Identities=31% Similarity=0.410 Sum_probs=99.8
Q ss_pred ccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127 4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83 (155)
Q Consensus 4 l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 83 (155)
+..+++.+|.++ ..|+..- .|..+++++...|.++ .+|+.++.+.+|.-++++.|.+. ..| .|.++..|..+.++
T Consensus 162 l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g 236 (565)
T KOG0472|consen 162 LSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVG 236 (565)
T ss_pred HHHhhccccchh-hCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhc
Confidence 344556666666 5555555 3666777777777766 66667777777777777777776 455 56777777777777
Q ss_pred cccccccCchhhh-CCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCcccee
Q 036127 84 YNKLHGEIPHEIA-NLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL 153 (155)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l 153 (155)
.|.+. .+|.... .++++.++++.+|+++. .|..++-+++|.++++++|.++ .+|... +++ +|+.|
T Consensus 237 ~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is-~Lp~sL-gnl-hL~~L 302 (565)
T KOG0472|consen 237 ENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS-SLPYSL-GNL-HLKFL 302 (565)
T ss_pred ccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccc-cCCccc-ccc-eeeeh
Confidence 77766 6666554 77888888888888877 6777788888888888888888 888777 766 66654
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.43 E-value=2.8e-13 Score=85.12 Aligned_cols=125 Identities=27% Similarity=0.324 Sum_probs=53.2
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
.++.|++++|.++ .+. .+...+.+++.|++++|.++ .+. .+..++.|+.|++++|.+....+.....+++|+.|++
T Consensus 20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 4788999999998 664 33335789999999999998 333 5778999999999999998443333346899999999
Q ss_pred ecccccccC-chhhhCCCCCceEEeeCccccccC---CccccCCCCCcEEEcc
Q 036127 83 EYNKLHGEI-PHEIANLLNLEDLVLGMNILVGVF---PAAIFNMSTLKVLMLI 131 (155)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~---~~~~~~~~~L~~l~l~ 131 (155)
++|++.... -..+..+++|+.+++.+|+++... ...+..+|+|+.||-.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 999987422 356778999999999999998631 1245678999988753
No 14
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.39 E-value=6.5e-15 Score=104.98 Aligned_cols=130 Identities=31% Similarity=0.510 Sum_probs=66.0
Q ss_pred cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeec
Q 036127 5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY 84 (155)
Q Consensus 5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 84 (155)
+.++++.|++. .+|..++ .+ -|+.+.+++|.++ ..|..++....|..+|.+.|.+. ..|+.++.+.+|+.+.+.+
T Consensus 124 t~l~ls~NqlS-~lp~~lC-~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 124 TFLDLSSNQLS-HLPDGLC-DL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred HHhhhccchhh-cCChhhh-cC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhh
Confidence 34445555555 4555544 22 2555555555554 44444554455555555555554 3444455555555555555
Q ss_pred ccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCccc
Q 036127 85 NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRI 143 (155)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 143 (155)
|++. .+|..+..+ .|..|+++.|+++. +|..|..|+.|+++-+.+|++. ..|..+
T Consensus 199 n~l~-~lp~El~~L-pLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 199 NHLE-DLPEELCSL-PLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred hhhh-hCCHHHhCC-ceeeeecccCceee-cchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 5554 445554422 24445555555544 4555555555555555555555 444433
No 15
>PLN03150 hypothetical protein; Provisional
Probab=99.38 E-value=3.4e-12 Score=95.07 Aligned_cols=107 Identities=34% Similarity=0.489 Sum_probs=73.8
Q ss_pred ccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeC
Q 036127 29 LKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGM 108 (155)
Q Consensus 29 l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 108 (155)
++.|++++|.+.+..|..+..+++|+.|++++|.+....|..++.+++|+.|++++|.+++..|..+..+++|+.|++.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56677777777766677777777777777777777666666677777777777777777767777777777777777777
Q ss_pred ccccccCCccccCC-CCCcEEEccCCcc
Q 036127 109 NILVGVFPAAIFNM-STLKVLMLINNSL 135 (155)
Q Consensus 109 ~~~~~~~~~~~~~~-~~L~~l~l~~n~~ 135 (155)
|.+++.+|..+... .++..+++.+|..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 77776666655442 3455666666643
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.38 E-value=2.3e-14 Score=106.87 Aligned_cols=125 Identities=31% Similarity=0.419 Sum_probs=87.9
Q ss_pred CCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEe
Q 036127 27 PYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVL 106 (155)
Q Consensus 27 ~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 106 (155)
+.|+.|++.+|.++..+.+.+.+.++|+.|+++.|++.......+..+..|+.|++++|+++ .+|..+..++.|++|..
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 34666677777777666667777778888888888777433456677777888888888877 67777777788888877
Q ss_pred eCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 107 GMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
.+|.+.. .| .+..+++|+.+|++.|.++...-... ...|+|++||+
T Consensus 438 hsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~-~p~p~LkyLdl 483 (1081)
T KOG0618|consen 438 HSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEA-LPSPNLKYLDL 483 (1081)
T ss_pred cCCceee-ch-hhhhcCcceEEecccchhhhhhhhhh-CCCcccceeec
Confidence 7777766 45 66777888888888887762222222 23367777775
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.37 E-value=8.8e-12 Score=98.54 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=36.9
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
+|+.|++.++.+. .++.... .+++|+.++++++......| .+..+++|+.|++.+|......|..+..+++|+.|++
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVH-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred CCcEEECcCcccc-ccccccc-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 3445555555544 4444433 45555555555443221223 2344455555555554433344444445555555555
Q ss_pred ecc
Q 036127 83 EYN 85 (155)
Q Consensus 83 ~~~ 85 (155)
++|
T Consensus 689 ~~c 691 (1153)
T PLN03210 689 SRC 691 (1153)
T ss_pred CCC
Confidence 443
No 18
>PLN03150 hypothetical protein; Provisional
Probab=99.37 E-value=4.1e-12 Score=94.63 Aligned_cols=105 Identities=30% Similarity=0.537 Sum_probs=52.4
Q ss_pred cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeec
Q 036127 5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY 84 (155)
Q Consensus 5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 84 (155)
+.|++++|.+++.+|..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+....|..++.+++|+.|++++
T Consensus 421 ~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 421 DGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEECCCCCccccCCHHHh-CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 3445555555544554444 455555555555555544554555555555555555555444455555555555555555
Q ss_pred ccccccCchhhhCC-CCCceEEeeCcc
Q 036127 85 NKLHGEIPHEIANL-LNLEDLVLGMNI 110 (155)
Q Consensus 85 ~~~~~~~~~~~~~~-~~L~~l~l~~~~ 110 (155)
|.+++..|..+... .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 55555555444332 233444444443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.35 E-value=2.3e-13 Score=93.75 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=6.0
Q ss_pred CccEEEccCCccc
Q 036127 3 SISDIRLTNNRLS 15 (155)
Q Consensus 3 ~l~~l~l~~~~~~ 15 (155)
+|+.|++++|.+.
T Consensus 82 ~L~~L~l~~~~~~ 94 (319)
T cd00116 82 GLQELDLSDNALG 94 (319)
T ss_pred ceeEEEccCCCCC
Confidence 3444444444443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.33 E-value=4.3e-12 Score=95.65 Aligned_cols=77 Identities=22% Similarity=0.408 Sum_probs=38.3
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
.+|+.|++++|.++ .+|..+. .+++.|++++|.+. .+|..+. .+|+.|++++|.+. ..|..+. .+|+.|+
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~ 289 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLS 289 (754)
T ss_pred cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEE
Confidence 35667777777766 5665433 34555555555555 3343332 24555555555444 2333221 2444445
Q ss_pred eeccccc
Q 036127 82 LEYNKLH 88 (155)
Q Consensus 82 l~~~~~~ 88 (155)
+++|+++
T Consensus 290 Ls~N~Lt 296 (754)
T PRK15370 290 VYDNSIR 296 (754)
T ss_pred CCCCccc
Confidence 5444443
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.33 E-value=8.7e-14 Score=103.90 Aligned_cols=128 Identities=30% Similarity=0.388 Sum_probs=95.1
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCc-cccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPS-ALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
.|+.|++.+|.+++..-+.+. .+.+|++|++++|.+. ..|+ .+.+++.|+.|++++|.++ ..|..+..++.|++|.
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHHhcCcccccchhhhc-cccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence 356677888888855444444 7788888888888887 4444 4777888888888888887 6677788888888888
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcc
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL 135 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (155)
..+|.+. .+| .+..+++|+.++++.|.++..........++|++|++++|.-
T Consensus 437 ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 437 AHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 8888876 566 777788888888888887754332333337888888888864
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=4.8e-12 Score=95.39 Aligned_cols=98 Identities=27% Similarity=0.478 Sum_probs=68.3
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
+++.|++++|.++ .+|..++ ++|+.|++++|.++ .+|..+. .+|+.|++++|.+. ..|..+. .+|+.|++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 5777888888888 6776654 57888888888877 4555443 36888888888877 5555443 46888888
Q ss_pred ecccccccCchhhhCCCCCceEEeeCccccc
Q 036127 83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVG 113 (155)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 113 (155)
++|+++ .+|..+. ++|+.|++++|.++.
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSIRT 297 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCcccc
Confidence 888777 4565442 467777777776654
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=1.5e-13 Score=94.32 Aligned_cols=142 Identities=24% Similarity=0.313 Sum_probs=117.1
Q ss_pred EEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeec-
Q 036127 6 DIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY- 84 (155)
Q Consensus 6 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~- 84 (155)
.++.++.+++ ++|..+. +....+++..|+|+...+.+|..+++|+.+|++.|.+....|+.|.++.++..|.+-+
T Consensus 50 ~VdCr~~GL~-eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred eEEccCCCcc-cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 4677888888 8888765 6778899999999977777899999999999999999989999999999887776655
Q ss_pred ccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccce
Q 036127 85 NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEV 152 (155)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~ 152 (155)
|+++......+..+..++.+.++-|.+......++..++++.-|.+.+|.+. .++...+..+..++.
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKT 192 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccch
Confidence 8898555567888999999888888888877788999999999999999887 777644455555544
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.29 E-value=8e-13 Score=91.07 Aligned_cols=132 Identities=31% Similarity=0.394 Sum_probs=67.3
Q ss_pred ccEEEccCCccccc----CCchhhcCC-CCccEEEccCcccccc----CCccccCCCCCcEEEcccCcCCCC----cchh
Q 036127 4 ISDIRLTNNRLSGE----LPKNIGSYL-PYLKALFLDKNMFHGK----IPSALSKCKQLQQLNLQFNNLSGA----IPKE 70 (155)
Q Consensus 4 l~~l~l~~~~~~~~----~~~~~~~~l-~~l~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~ 70 (155)
|+.|++++|.+++. +...+. .+ ++++.+++++|.+++. ....+..+++|+.+++++|.+... .+..
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 66677776666521 112222 34 5667777777666521 122344455666677666665521 1122
Q ss_pred hhCCCcccEEEeecccccccC----chhhhCCCCCceEEeeCccccccCCcccc-----CCCCCcEEEccCCccc
Q 036127 71 IGNLTMLKGIYLEYNKLHGEI----PHEIANLLNLEDLVLGMNILVGVFPAAIF-----NMSTLKVLMLINNSLS 136 (155)
Q Consensus 71 ~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-----~~~~L~~l~l~~n~~~ 136 (155)
+...++|+.|++++|.+++.. ...+..+++|+++++++|.+++.....+. ..+.|+.+++++|.++
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 334456666666666654322 22334455666666666665542111111 1245666666666654
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.27 E-value=8.8e-11 Score=93.03 Aligned_cols=126 Identities=23% Similarity=0.258 Sum_probs=87.5
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
+|+.|.+.++.++ .+|..+ .+.+|+.|++.++.+. ..+..+..+++|+.++++++......|. +..+++|+.|++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence 3566666666666 566554 3578888888888877 5677777888888888887654434453 677888899998
Q ss_pred ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCc
Q 036127 83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNS 134 (155)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 134 (155)
.+|.....+|..+..+++|+.+++.+|.....+|..+ .+++|+.+++++|.
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 8876555778888888888888888875333345433 45566666666553
No 26
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.25 E-value=9e-12 Score=65.29 Aligned_cols=60 Identities=35% Similarity=0.504 Sum_probs=43.8
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCc
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNN 62 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~ 62 (155)
++|+.|++++|.++ .+|...+..+++|+++++++|.++...+.+|..+++|+.+++++|.
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46777777777777 7777777677777777777777775555667777777777777765
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=9.2e-13 Score=94.25 Aligned_cols=143 Identities=27% Similarity=0.418 Sum_probs=124.4
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
.|+.+.+..|.+. .+|..+. .+..+..++++.|++. ..|..+..++ |+.+.+++|.++ ..|...+...+|..++.
T Consensus 99 ~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 99 SLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhh
Confidence 3556777888888 8898888 7999999999999998 7787766665 889999999988 78888888899999999
Q ss_pred ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+.|.+. .+|..++.+.+|+.+++.+|.+.. .|..++.++ |..||++.|+++ .+|-.| .+|.+|++|.|
T Consensus 174 s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~Lp-Li~lDfScNkis-~iPv~f-r~m~~Lq~l~L 241 (722)
T KOG0532|consen 174 SKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLP-LIRLDFSCNKIS-YLPVDF-RKMRHLQVLQL 241 (722)
T ss_pred hhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCc-eeeeecccCcee-ecchhh-hhhhhheeeee
Confidence 999998 789999999999999999999988 566677554 899999999999 999999 99999998854
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.22 E-value=4.4e-11 Score=90.25 Aligned_cols=70 Identities=26% Similarity=0.370 Sum_probs=34.3
Q ss_pred cccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 76 MLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 76 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+|+.|++++|.++ .+|.. .++|+.|++++|.++. +|.. ..+|+.+++++|.++ .+|..+ +.+++|..+++
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl-~~L~~L~~LdL 452 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESL-IHLSSETTVNL 452 (788)
T ss_pred ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHH-hhccCCCeEEC
Confidence 3445555555544 23321 1345555555555544 3321 123455566666665 566555 55666665553
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=2.8e-12 Score=85.91 Aligned_cols=130 Identities=25% Similarity=0.304 Sum_probs=100.1
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
.|+.++++.|.++ .+...+. -.|.++.|++++|.+. .+.. +..+.+|+.||+++|.+. ...++-..+.+.++|.+
T Consensus 285 ~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchh-hhhhhhh-hccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 4778899999888 8887776 6789999999999887 3333 777888999999999887 55566667778888888
Q ss_pred ecccccccCchhhhCCCCCceEEeeCcccccc-CCccccCCCCCcEEEccCCcccCCCC
Q 036127 83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGV-FPAAIFNMSTLKVLMLINNSLSGSLP 140 (155)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~ 140 (155)
..|.+. ..+.++.+.+|..+++.+|+|... ....++.+|-|+++.+.+|++. .++
T Consensus 360 a~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~v 415 (490)
T KOG1259|consen 360 AQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSV 415 (490)
T ss_pred hhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccc
Confidence 888874 345667778888889999887542 1145677888888888889887 544
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=2.2e-11 Score=86.48 Aligned_cols=143 Identities=39% Similarity=0.585 Sum_probs=74.1
Q ss_pred ccEEEccCCcccccCCchhhcCCC-CccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 4 ISDIRLTNNRLSGELPKNIGSYLP-YLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 4 l~~l~l~~~~~~~~~~~~~~~~l~-~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
++.+++.++.++ ++++... .+. +++.++++.|.+. ..+..+..++.|+.|+++.|.+. ..+...+..+.|+.+++
T Consensus 118 l~~L~l~~n~i~-~i~~~~~-~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 118 LTSLDLDNNNIT-DIPPLIG-LLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred eeEEecCCcccc-cCccccc-cchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 455555555555 5555444 332 5566666666555 33344455555555555555555 33333334455555555
Q ss_pred ecccccccCchh-----------------------hhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCC
Q 036127 83 EYNKLHGEIPHE-----------------------IANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSL 139 (155)
Q Consensus 83 ~~~~~~~~~~~~-----------------------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 139 (155)
++|+++ .+|.. +..+..+..+.+.+|++.. .+..+..+++++++++++|.++ .+
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~-~i 270 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS-SI 270 (394)
T ss_pred cCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccchhccccccceecccccccc-cc
Confidence 555554 33333 2333333333333333332 2344555666777777777777 66
Q ss_pred CcccccCCCccceecC
Q 036127 140 PSRIDLSLPTVEVLDC 155 (155)
Q Consensus 140 ~~~~~~~~~~L~~l~l 155 (155)
+. + +...+++.+|+
T Consensus 271 ~~-~-~~~~~l~~L~~ 284 (394)
T COG4886 271 SS-L-GSLTNLRELDL 284 (394)
T ss_pred cc-c-cccCccCEEec
Confidence 55 3 56666666653
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.17 E-value=5.1e-11 Score=62.39 Aligned_cols=61 Identities=39% Similarity=0.453 Sum_probs=42.0
Q ss_pred CcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcc
Q 036127 75 TMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL 135 (155)
Q Consensus 75 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (155)
++|+.+++++|.++...+..+..+++|+++++++|.++...+.+|.++++|+++++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566777777777644445666777777777777777766666777777777777777654
No 32
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.16 E-value=6.7e-11 Score=89.31 Aligned_cols=84 Identities=24% Similarity=0.289 Sum_probs=65.9
Q ss_pred CCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEc
Q 036127 51 KQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLML 130 (155)
Q Consensus 51 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 130 (155)
.+|+.|++++|.+. ..|.. .++|+.|++++|.++ .+|.. +.+|+.+++.+|.++. +|..+..+++++.+++
T Consensus 382 ~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 382 SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNL 452 (788)
T ss_pred cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCcccc-cChHHhhccCCCeEEC
Confidence 35778888888877 34432 357899999999998 46654 3467889999999986 7888999999999999
Q ss_pred cCCcccCCCCccc
Q 036127 131 INNSLSGSLPSRI 143 (155)
Q Consensus 131 ~~n~~~~~~~~~~ 143 (155)
++|++++..+..+
T Consensus 453 s~N~Ls~~~~~~L 465 (788)
T PRK15387 453 EGNPLSERTLQAL 465 (788)
T ss_pred CCCCCCchHHHHH
Confidence 9999997766543
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=4.5e-11 Score=84.86 Aligned_cols=125 Identities=34% Similarity=0.463 Sum_probs=94.3
Q ss_pred EEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCC-CCcEEEcccCcCCCCcchhhhCCCcccEEEeec
Q 036127 6 DIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCK-QLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY 84 (155)
Q Consensus 6 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 84 (155)
.+....+.+. .-...+. .++.+..+++.+|.++ .++....... +|+.+++++|.+. ..+...+.++.|+.|+++.
T Consensus 97 ~l~~~~~~~~-~~~~~~~-~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLR-SNISELL-ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccc-cCchhhh-cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 3566666654 2233344 4678999999999998 6666666664 8999999999998 5556678999999999999
Q ss_pred ccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCccc
Q 036127 85 NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS 136 (155)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (155)
|++. .+|......+.|+.+++++|.+.. +|........|+.+.+++|...
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~ 222 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII 222 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce
Confidence 9998 677766678899999999999887 4444344455777777777543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=6.5e-11 Score=79.49 Aligned_cols=121 Identities=25% Similarity=0.280 Sum_probs=94.1
Q ss_pred CCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEE
Q 036127 26 LPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLV 105 (155)
Q Consensus 26 l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 105 (155)
+..++++++++|.|+ ....+..-.+.++.|+++.|.+.. .. .+..+++|+.||+++|.++ ....+-..+.+.+++.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 456888999999998 667777778899999999999873 22 3778889999999999887 5555656778889999
Q ss_pred eeCccccccCCccccCCCCCcEEEccCCcccCCCC--cccccCCCccceec
Q 036127 106 LGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLP--SRIDLSLPTVEVLD 154 (155)
Q Consensus 106 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~--~~~~~~~~~L~~l~ 154 (155)
+.+|.+-+. +.+..+-+|..+++++|++. .+. +.+ +++|.|+++.
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie-~ldeV~~I-G~LPCLE~l~ 405 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIE-ELDEVNHI-GNLPCLETLR 405 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchh-hHHHhccc-ccccHHHHHh
Confidence 999977553 34566778899999999997 554 345 7788877653
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=6.2e-10 Score=77.73 Aligned_cols=135 Identities=23% Similarity=0.273 Sum_probs=65.1
Q ss_pred CCCccEEEccCCcccccCC-chhhcCCCCccEEEccCccccccCCcc-ccCCCCCcEEEcccCcCCCCcc-hhhhCCCc-
Q 036127 1 MSSISDIRLTNNRLSGELP-KNIGSYLPYLKALFLDKNMFHGKIPSA-LSKCKQLQQLNLQFNNLSGAIP-KEIGNLTM- 76 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~-~~~~~~l~~l~~l~l~~n~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~- 76 (155)
|++++.|+++.|-+....+ ..+.+.+|+|+.|+++.|.+..-.... -..+.+++.|.++.|.++.... .....+|+
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 4566777777776653211 223346777777777777654111111 1123456666666665542211 11223344
Q ss_pred -----------------------ccEEEeecccccccCc--hhhhCCCCCceEEeeCccccccC-Ccc-----ccCCCCC
Q 036127 77 -----------------------LKGIYLEYNKLHGEIP--HEIANLLNLEDLVLGMNILVGVF-PAA-----IFNMSTL 125 (155)
Q Consensus 77 -----------------------L~~L~l~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~-~~~-----~~~~~~L 125 (155)
|+.|++++|++. .++ ...+.++.|+.++++.+.+.+.. |.. ...+++|
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 455555554443 222 23344555555555555544321 111 2234566
Q ss_pred cEEEccCCccc
Q 036127 126 KVLMLINNSLS 136 (155)
Q Consensus 126 ~~l~l~~n~~~ 136 (155)
++|++..|.+.
T Consensus 304 ~~L~i~~N~I~ 314 (505)
T KOG3207|consen 304 EYLNISENNIR 314 (505)
T ss_pred eeeecccCccc
Confidence 66666666663
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=7.4e-10 Score=77.36 Aligned_cols=107 Identities=28% Similarity=0.332 Sum_probs=69.1
Q ss_pred CCccEEEccCCcccccCCc-hhhcCCCCccEEEccCccccccCC--ccccCCCCCcEEEcccCcCCCCcc-hhhhCCCcc
Q 036127 2 SSISDIRLTNNRLSGELPK-NIGSYLPYLKALFLDKNMFHGKIP--SALSKCKQLQQLNLQFNNLSGAIP-KEIGNLTML 77 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~-~~~~~l~~l~~l~l~~n~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L 77 (155)
..|+.+.+.++... ..+. .....+++++.|+++.|-+...-+ .-...+++|+.|.++.|.+..-.. ..-..++++
T Consensus 121 kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 45788888888776 5553 233479999999999998773222 224568999999999998762111 122356789
Q ss_pred cEEEeecccccccCc-hhhhCCCCCceEEeeCc
Q 036127 78 KGIYLEYNKLHGEIP-HEIANLLNLEDLVLGMN 109 (155)
Q Consensus 78 ~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~ 109 (155)
+.|.++.|.++.... .....+|++..|.+..|
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 999999998763211 12233444444444444
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=7.4e-09 Score=79.77 Aligned_cols=126 Identities=23% Similarity=0.342 Sum_probs=75.3
Q ss_pred cEEEccCCcccccCCchhhcCCCCccEEEccCcc--ccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNM--FHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~--~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
+.+.+.++.+. .++.... .+++++|-+..|. +.......|..++.|+.||+++|.-....|...+.+-+|++|++
T Consensus 526 rr~s~~~~~~~-~~~~~~~--~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 526 RRMSLMNNKIE-HIAGSSE--NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred eEEEEeccchh-hccCCCC--CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 34445555554 4443332 3466666666664 33233333566677777777766544466777777777777777
Q ss_pred ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCc
Q 036127 83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNS 134 (155)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 134 (155)
.+..++ .+|..+.++..|.+|++..+.....++.....+.+|+++.+....
T Consensus 603 ~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 603 SDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 776666 667777777777777776654433345555666777777665543
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.76 E-value=5.9e-09 Score=71.02 Aligned_cols=135 Identities=17% Similarity=0.166 Sum_probs=84.1
Q ss_pred CCccEEEccCCcccccCCchhh---cCCCCccEEEccCccccccCCcc-------------ccCCCCCcEEEcccCcCCC
Q 036127 2 SSISDIRLTNNRLSGELPKNIG---SYLPYLKALFLDKNMFHGKIPSA-------------LSKCKQLQQLNLQFNNLSG 65 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~---~~l~~l~~l~l~~n~~~~~~~~~-------------~~~~~~L~~l~l~~~~~~~ 65 (155)
+.|+.++++.|.+....++.+. ..+..|++|.+.+|.+....... ...-+.|+.+...+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 4688899999988755444332 34678888888888765221111 2234567888887777652
Q ss_pred C----cchhhhCCCcccEEEeecccccccC----chhhhCCCCCceEEeeCcccccc----CCccccCCCCCcEEEccCC
Q 036127 66 A----IPKEIGNLTMLKGIYLEYNKLHGEI----PHEIANLLNLEDLVLGMNILVGV----FPAAIFNMSTLKVLMLINN 133 (155)
Q Consensus 66 ~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n 133 (155)
. ....|...+.|+.+.+..|.+.... ...+..++.|+.|++++|.++.. +..++..+++|+.+++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 2 2234555667777777777664222 23455677777777777766542 2345556667777777777
Q ss_pred ccc
Q 036127 134 SLS 136 (155)
Q Consensus 134 ~~~ 136 (155)
.+.
T Consensus 252 ll~ 254 (382)
T KOG1909|consen 252 LLE 254 (382)
T ss_pred ccc
Confidence 665
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.62 E-value=3.6e-09 Score=63.37 Aligned_cols=82 Identities=29% Similarity=0.429 Sum_probs=43.2
Q ss_pred ccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127 4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83 (155)
Q Consensus 4 l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 83 (155)
|+.+++++|.+. ++|+.+...++.++++++.+|.+. .+|..+..++.|+.+.++.|.+. ..|..+.++.++-.|+..
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 344555555555 555554445555555555555555 44555555555555555555554 334444445555555555
Q ss_pred ccccc
Q 036127 84 YNKLH 88 (155)
Q Consensus 84 ~~~~~ 88 (155)
.|.+-
T Consensus 132 ~na~~ 136 (177)
T KOG4579|consen 132 ENARA 136 (177)
T ss_pred CCccc
Confidence 55443
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.58 E-value=6.5e-08 Score=74.71 Aligned_cols=107 Identities=28% Similarity=0.347 Sum_probs=88.6
Q ss_pred CCccEEEccCCc--ccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccE
Q 036127 2 SSISDIRLTNNR--LSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKG 79 (155)
Q Consensus 2 ~~l~~l~l~~~~--~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 79 (155)
+++++|-+..|. +. .++...+..|+.|++||+++|.--+.+|..++.+.+|+.|++.++.+. ..|..++.+..|.+
T Consensus 545 ~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 457788888886 55 778877778999999999987655589999999999999999999988 88999999999999
Q ss_pred EEeecccccccCchhhhCCCCCceEEeeCcc
Q 036127 80 IYLEYNKLHGEIPHEIANLLNLEDLVLGMNI 110 (155)
Q Consensus 80 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 110 (155)
|++..+......|.....+.+|+++.+....
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccc
Confidence 9999876554556666778899998886553
No 41
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.58 E-value=2.5e-07 Score=58.93 Aligned_cols=124 Identities=21% Similarity=0.207 Sum_probs=83.0
Q ss_pred EEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecc
Q 036127 6 DIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYN 85 (155)
Q Consensus 6 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 85 (155)
.+++++..+. .+.. +...+-+...+++++|.+. . .+.|..++.|.+|.+++|.++...|..-..++++..|.+.+|
T Consensus 23 e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 23 ELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccc-chhh-ccccccccceecccccchh-h-cccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 3455555444 2211 2223456778888888876 2 345778888999999999988666665555678888999988
Q ss_pred cccccC-chhhhCCCCCceEEeeCccccccC---CccccCCCCCcEEEccCC
Q 036127 86 KLHGEI-PHEIANLLNLEDLVLGMNILVGVF---PAAIFNMSTLKVLMLINN 133 (155)
Q Consensus 86 ~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~---~~~~~~~~~L~~l~l~~n 133 (155)
.+.... -..+..|++|+.+.+-+|+++..- --.+..+|+++.||+++-
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 876322 234567888999988888876531 123556788888887654
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.57 E-value=4.7e-10 Score=83.02 Aligned_cols=129 Identities=29% Similarity=0.394 Sum_probs=84.4
Q ss_pred ccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127 4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83 (155)
Q Consensus 4 l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 83 (155)
|...++++|.+. .+...+. -++.++.|++++|+++ .+. .+..++.|++||++.|.+. ..|..-.--.+|+.|.+.
T Consensus 166 L~~a~fsyN~L~-~mD~SLq-ll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQ-LLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHH-HHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 455677777777 5555544 6788888888888877 333 6777888888888888876 333311112247888888
Q ss_pred cccccccCchhhhCCCCCceEEeeCccccccC-CccccCCCCCcEEEccCCcccCCCC
Q 036127 84 YNKLHGEIPHEIANLLNLEDLVLGMNILVGVF-PAAIFNMSTLKVLMLINNSLSGSLP 140 (155)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~ 140 (155)
+|.++ ....+.++.+|+.|+++.|-+.+-- ...+..+..|+.|++.+|++. .-|
T Consensus 241 nN~l~--tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~-c~p 295 (1096)
T KOG1859|consen 241 NNALT--TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC-CAP 295 (1096)
T ss_pred ccHHH--hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc-cCH
Confidence 88765 3345566777888888887655421 123445567777888888775 444
No 43
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.49 E-value=1e-06 Score=52.83 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=68.1
Q ss_pred cCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhh
Q 036127 17 ELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIA 96 (155)
Q Consensus 17 ~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 96 (155)
.++..++..+.+++.+.+.. .+......+|..+.+++.+.+..+ +.......|..+.+++.+.+.. .+.......+.
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 35566666777888888875 455455566888888999998775 5544456677787889988865 44434455667
Q ss_pred CCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccc
Q 036127 97 NLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVE 151 (155)
Q Consensus 97 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~ 151 (155)
.+++++.+.+..+ +.......+.++ .++.+.+.. .+. .++...|.++++|+
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK 129 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence 7888998888765 555455667776 888888765 555 66666667777764
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.47 E-value=4.4e-08 Score=66.86 Aligned_cols=133 Identities=23% Similarity=0.225 Sum_probs=66.5
Q ss_pred CccEEEccCCcccccCC---chhhcCCCCccEEEccCccccc----cCCccccCCCCCcEEEcccCcCCCC----cchhh
Q 036127 3 SISDIRLTNNRLSGELP---KNIGSYLPYLKALFLDKNMFHG----KIPSALSKCKQLQQLNLQFNNLSGA----IPKEI 71 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~---~~~~~~l~~l~~l~l~~n~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~ 71 (155)
.|+++.+.+|.+...-. ...++..+.++.+.++.|.|.. ....++..+++|+.||+++|.++.. ....+
T Consensus 158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL 237 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL 237 (382)
T ss_pred ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence 35555666665552111 1122334556666666665541 1122345566666666666665532 22234
Q ss_pred hCCCcccEEEeecccccccCchhh-----hCCCCCceEEeeCcccccc----CCccccCCCCCcEEEccCCcc
Q 036127 72 GNLTMLKGIYLEYNKLHGEIPHEI-----ANLLNLEDLVLGMNILVGV----FPAAIFNMSTLKVLMLINNSL 135 (155)
Q Consensus 72 ~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~ 135 (155)
..+++|+.+++++|.+.......+ ...+.|..+.+.+|.++.. +...+...+.|..|++++|.+
T Consensus 238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 455566666666666544333222 1245666666666655431 112233455666666666666
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.5e-09 Score=70.61 Aligned_cols=58 Identities=24% Similarity=0.203 Sum_probs=40.8
Q ss_pred hCCCCCceEEeeCcc-ccccCCccccCCCCCcEEEccCCcccCCCCccc--ccCCCccceecC
Q 036127 96 ANLLNLEDLVLGMNI-LVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRI--DLSLPTVEVLDC 155 (155)
Q Consensus 96 ~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~--~~~~~~L~~l~l 155 (155)
..++++.+|++++|. ++.....++..++.|+++.++.|+.- +|..+ +.+.|.|.+||+
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDV 370 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEe
Confidence 467888899988874 44444467778888999999888753 33322 166888888874
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.44 E-value=7.4e-09 Score=62.04 Aligned_cols=108 Identities=26% Similarity=0.319 Sum_probs=70.0
Q ss_pred ccEEEccCccccccCCcc---ccCCCCCcEEEcccCcCCCCcchhhhC-CCcccEEEeecccccccCchhhhCCCCCceE
Q 036127 29 LKALFLDKNMFHGKIPSA---LSKCKQLQQLNLQFNNLSGAIPKEIGN-LTMLKGIYLEYNKLHGEIPHEIANLLNLEDL 104 (155)
Q Consensus 29 l~~l~l~~n~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 104 (155)
+..++++.+++- ..+++ +.....|+.+++++|.+. ..|..|.. ++..+.+++..|.++ .+|..+..++.|+.+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 344566666654 23333 233455677778887776 44444443 457777788877777 677777777888888
Q ss_pred EeeCccccccCCccccCCCCCcEEEccCCcccCCCCc
Q 036127 105 VLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPS 141 (155)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 141 (155)
+++.|.+.. .|..+..+.++..|+..+|.+. .+|-
T Consensus 106 Nl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~-eid~ 140 (177)
T KOG4579|consen 106 NLRFNPLNA-EPRVIAPLIKLDMLDSPENARA-EIDV 140 (177)
T ss_pred ccccCcccc-chHHHHHHHhHHHhcCCCCccc-cCcH
Confidence 888887766 4555555777777777777766 5553
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.41 E-value=3.9e-07 Score=44.14 Aligned_cols=37 Identities=30% Similarity=0.621 Sum_probs=23.4
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCcccc
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFH 40 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~ 40 (155)
++|+.|++++|.++ .+|+.+. .|++|+.|++++|.++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~-~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELS-NLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGT-TCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHh-CCCCCCEEEecCCCCC
Confidence 35667777777777 6666555 6777777777777665
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.40 E-value=7.6e-08 Score=68.99 Aligned_cols=104 Identities=29% Similarity=0.354 Sum_probs=61.8
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
.+++.+++.+|.++ .+...+. .+++|+++++++|.|+... .+..++.|+.|++.+|.+.. ...+..+..|+.++
T Consensus 95 ~~l~~l~l~~n~i~-~i~~~l~-~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 95 KSLEALDLYDNKIE-KIENLLS-SLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD--ISGLESLKSLKLLD 168 (414)
T ss_pred cceeeeeccccchh-hcccchh-hhhcchheecccccccccc--chhhccchhhheeccCcchh--ccCCccchhhhccc
Confidence 45677777777777 5544233 5677777777777776322 23455567777777777652 22344466777777
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccc
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNIL 111 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 111 (155)
+++|.+...-+.....+..++.+.+.+|.+
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCch
Confidence 777776533220034455566666666644
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.39 E-value=5.5e-08 Score=73.34 Aligned_cols=147 Identities=17% Similarity=0.247 Sum_probs=93.1
Q ss_pred CccEEEccCCccc-ccCCchhhcCCCCccEEEccCccccc-cCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 3 SISDIRLTNNRLS-GELPKNIGSYLPYLKALFLDKNMFHG-KIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 3 ~l~~l~l~~~~~~-~~~~~~~~~~l~~l~~l~l~~n~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
+|+.|++++...- ...+..+...+|.|+.|.+.+-.+.. ....-..+.++|..||++++.+... ...+.+++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 5777788764322 13344455568889999888876542 1122334567888889998888733 567788888888
Q ss_pred Eeecccccc-cCchhhhCCCCCceEEeeCccccccC------CccccCCCCCcEEEccCCcccCCCCcccccCCCccc
Q 036127 81 YLEYNKLHG-EIPHEIANLLNLEDLVLGMNILVGVF------PAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVE 151 (155)
Q Consensus 81 ~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~------~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~ 151 (155)
.+.+-.+.. ..-..+.++.+|++||++..+..... -+.-..+|.|+.+|.+++.+...+-+.+....|+|+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 777655542 12234567888999998876543311 122335788899999888876554444444455554
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.39 E-value=2.9e-09 Score=78.97 Aligned_cols=102 Identities=28% Similarity=0.320 Sum_probs=58.4
Q ss_pred ccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchh-hhCCCCCceEEee
Q 036127 29 LKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHE-IANLLNLEDLVLG 107 (155)
Q Consensus 29 l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~l~l~ 107 (155)
|.+.+++.|.+. ....++.-++.++.|+++.|+++.. ..+..+++|++||+++|.++ .+|.- ...| .|..|+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence 444445555554 4444555556667777777766522 24566667777777777665 33322 2222 36666777
Q ss_pred CccccccCCccccCCCCCcEEEccCCcccC
Q 036127 108 MNILVGVFPAAIFNMSTLKVLMLINNSLSG 137 (155)
Q Consensus 108 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (155)
+|.++.. -.+.++.+|+.||+++|-+.+
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhc
Confidence 7666553 234566667777777776653
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.34 E-value=7.8e-08 Score=68.96 Aligned_cols=126 Identities=29% Similarity=0.363 Sum_probs=85.7
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
.++.+++..|.+. .+-..+. .+.+++.+++..|.+. .....+..+++|+.+++++|.+... ..+..++.|+.|++
T Consensus 73 ~l~~l~l~~n~i~-~~~~~l~-~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 73 SLKELNLRQNLIA-KILNHLS-KLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL 147 (414)
T ss_pred hHHhhccchhhhh-hhhcccc-cccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence 3445556667666 3333333 6788888888888887 3343366788888888888888732 23455666888888
Q ss_pred ecccccccCchhhhCCCCCceEEeeCccccccCC-ccccCCCCCcEEEccCCccc
Q 036127 83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFP-AAIFNMSTLKVLMLINNSLS 136 (155)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~ 136 (155)
.+|.+.. ...+..+..|+.+++++|.++...+ . ...+.+++.+.+.+|.+.
T Consensus 148 ~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 148 SGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 8888862 2344447788888888888877433 1 456677777878777775
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.33 E-value=9.1e-07 Score=42.85 Aligned_cols=34 Identities=38% Similarity=0.583 Sum_probs=12.3
Q ss_pred ccEEEeecccccccCchhhhCCCCCceEEeeCccc
Q 036127 77 LKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNIL 111 (155)
Q Consensus 77 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 111 (155)
|+.|++++|+++ .+|..+..+++|+.+++++|++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 334444444433 2233333344444444444433
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.27 E-value=3.8e-06 Score=53.69 Aligned_cols=121 Identities=22% Similarity=0.262 Sum_probs=85.2
Q ss_pred ccEEEccCccccccCCcccc-CCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEee
Q 036127 29 LKALFLDKNMFHGKIPSALS-KCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLG 107 (155)
Q Consensus 29 l~~l~l~~n~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 107 (155)
=+.+++.+.++. .... ++ .......+|+++|.+.. -..|..++.|.+|.+..|.++...|.--.-++.+..|.+.
T Consensus 21 e~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc-chhh-ccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 344555555544 1111 11 12356788999998762 2357788899999999999996656555556889999999
Q ss_pred CccccccCC-ccccCCCCCcEEEccCCcccCCCCc---ccccCCCccceec
Q 036127 108 MNILVGVFP-AAIFNMSTLKVLMLINNSLSGSLPS---RIDLSLPTVEVLD 154 (155)
Q Consensus 108 ~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~~~~~L~~l~ 154 (155)
+|++..... ..+..+|+|+++.+-+|+++ .... .+...+|+|+.||
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~-~k~~YR~yvl~klp~l~~LD 146 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVE-HKKNYRLYVLYKLPSLRTLD 146 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchh-cccCceeEEEEecCcceEee
Confidence 998865321 45678899999999999998 4432 2336789999887
No 54
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.24 E-value=5.6e-06 Score=49.63 Aligned_cols=118 Identities=24% Similarity=0.279 Sum_probs=66.0
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
.+|+.+.+.. .++ .++...+..+++++.+.+.++ +......+|..+.+++.+.+.. .+.......|..++.++.+.
T Consensus 12 ~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 12 SNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 4688888875 566 788888878889999999886 5545566788888999999976 44324456777799999999
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCc
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLK 126 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 126 (155)
+..+ +.......+.++ .++.+.+.. .+......+|.++++|+
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 9765 543445667776 888888775 35554556777776653
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=1.2e-06 Score=59.21 Aligned_cols=83 Identities=25% Similarity=0.265 Sum_probs=53.3
Q ss_pred CCccEEEccCCcccccCC-chhhcCCCCccEEEccCccccccCCccc-cCCCCCcEEEcccCcCCCCc-chhhhCCCccc
Q 036127 2 SSISDIRLTNNRLSGELP-KNIGSYLPYLKALFLDKNMFHGKIPSAL-SKCKQLQQLNLQFNNLSGAI-PKEIGNLTMLK 78 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~-~~~~~~l~~l~~l~l~~n~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~ 78 (155)
+.++.+++.+|.+++.-. ..+.+.||.+++|+++.|++...+ +.. ....+|+.+.+.+..+.... .+....+|.++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 346778888888873211 123357899999999999887322 222 35568888888887765332 23444566666
Q ss_pred EEEeecc
Q 036127 79 GIYLEYN 85 (155)
Q Consensus 79 ~L~l~~~ 85 (155)
.+.++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 6666666
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.96 E-value=1e-05 Score=61.43 Aligned_cols=111 Identities=15% Similarity=0.134 Sum_probs=81.3
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCC-CcchhhhCCCcccE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSG-AIPKEIGNLTMLKG 79 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~ 79 (155)
||+|+.|.+++-.+..+=-..+...+|+|..||+++..++.. .+++.+++|+.|.+.+-.+.. ..-..+..+++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 588999999987765221234456899999999999998833 668889999999988766652 22345668999999
Q ss_pred EEeecccccccCchh-------hhCCCCCceEEeeCcccccc
Q 036127 80 IYLEYNKLHGEIPHE-------IANLLNLEDLVLGMNILVGV 114 (155)
Q Consensus 80 L~l~~~~~~~~~~~~-------~~~~~~L~~l~l~~~~~~~~ 114 (155)
||+++.... ..+.. -..+|.|+.++.+++.+...
T Consensus 225 LDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 225 LDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred eeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 999987543 22211 23578999999999877653
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.91 E-value=1.8e-05 Score=53.17 Aligned_cols=135 Identities=21% Similarity=0.189 Sum_probs=73.8
Q ss_pred CCCccEEEccCCcccccCCchhh---cCCCCccEEEccCccccccCCcccc-------------CCCCCcEEEcccCcCC
Q 036127 1 MSSISDIRLTNNRLSGELPKNIG---SYLPYLKALFLDKNMFHGKIPSALS-------------KCKQLQQLNLQFNNLS 64 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~---~~l~~l~~l~l~~n~~~~~~~~~~~-------------~~~~L~~l~l~~~~~~ 64 (155)
|+.++.++++.|.+....|..+. ..-+.+.+|.+.+|.+.......++ .-+.|+.+....|++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 67888999999988876665543 2346788899998876522222122 2356777777666654
Q ss_pred CCcch-----hhhCCCcccEEEeecccccccCch-----hhhCCCCCceEEeeCcccccc----CCccccCCCCCcEEEc
Q 036127 65 GAIPK-----EIGNLTMLKGIYLEYNKLHGEIPH-----EIANLLNLEDLVLGMNILVGV----FPAAIFNMSTLKVLML 130 (155)
Q Consensus 65 ~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l 130 (155)
..+. .+.....+..+.+..|.+...... .+..+.+|..|++++|-++.. ...+++..+.|+.+.+
T Consensus 171 -ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 171 -NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred -cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 2221 122233455555555554422111 122345666666666655431 2233444555566666
Q ss_pred cCCccc
Q 036127 131 INNSLS 136 (155)
Q Consensus 131 ~~n~~~ 136 (155)
.+|.++
T Consensus 250 nDClls 255 (388)
T COG5238 250 NDCLLS 255 (388)
T ss_pred cchhhc
Confidence 655554
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=0.00037 Score=49.85 Aligned_cols=70 Identities=11% Similarity=0.263 Sum_probs=43.0
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccC-cCCCCcchhhhCCCcccEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN-NLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~L 80 (155)
..++.|++++|.++ .+|. -.++|+.|.+.++.--...|..+ ..+|+.|.+.+| .+. ..|. +|+.|
T Consensus 52 ~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L 117 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSL 117 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceE
Confidence 56788999988888 6772 23568888888743222455433 247888888877 333 3332 35555
Q ss_pred Eeecc
Q 036127 81 YLEYN 85 (155)
Q Consensus 81 ~l~~~ 85 (155)
.+..+
T Consensus 118 ~L~~n 122 (426)
T PRK15386 118 EIKGS 122 (426)
T ss_pred EeCCC
Confidence 55544
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=7.6e-07 Score=59.64 Aligned_cols=98 Identities=24% Similarity=0.375 Sum_probs=75.7
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCc-chhhhCCCcccEEE
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAI-PKEIGNLTMLKGIY 81 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~L~ 81 (155)
++++|++-++++. +| .+..+|+.+++|.++-|.|+.. ..+..|+.|+.|.+..|.+.... -.++.++++|+.|+
T Consensus 20 ~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4677888888887 54 3455799999999999999843 34678999999999999987433 25677899999999
Q ss_pred eecccccccCchh-----hhCCCCCceEE
Q 036127 82 LEYNKLHGEIPHE-----IANLLNLEDLV 105 (155)
Q Consensus 82 l~~~~~~~~~~~~-----~~~~~~L~~l~ 105 (155)
+..|.+-+..+.. +.-+|+|+.|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999887655443 45677887763
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=1e-05 Score=54.93 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=42.8
Q ss_pred hhCCCcccEEEeeccc-ccccCchhhhCCCCCceEEeeCccccccCCc---cccCCCCCcEEEccCC
Q 036127 71 IGNLTMLKGIYLEYNK-LHGEIPHEIANLLNLEDLVLGMNILVGVFPA---AIFNMSTLKVLMLINN 133 (155)
Q Consensus 71 ~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~---~~~~~~~L~~l~l~~n 133 (155)
...++++..||++++. ++...-..+..++.|+++.+++|. +.+|. .+...|+|.+|++.++
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence 4467888999998764 443334556778899999998883 33443 3567788999988655
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=2.1e-06 Score=57.61 Aligned_cols=99 Identities=21% Similarity=0.232 Sum_probs=54.3
Q ss_pred CCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCC-ccccCCCCCcEEEc
Q 036127 52 QLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFP-AAIFNMSTLKVLML 130 (155)
Q Consensus 52 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l 130 (155)
+.+.|.+.++.+.+ .+....++.|+.|.++.|+++ ....+..|.+|+.+.+..|.|.+.-. ..+.++++|+.|++
T Consensus 20 ~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIs--sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKIS--SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccH--HHHHHhcccceeEEeeccccc--cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 34455555555541 233445666667777776665 23344566666666666666654211 23456677777777
Q ss_pred cCCcccCCCCccc----ccCCCccceec
Q 036127 131 INNSLSGSLPSRI----DLSLPTVEVLD 154 (155)
Q Consensus 131 ~~n~~~~~~~~~~----~~~~~~L~~l~ 154 (155)
..|+-.+..+... ...+|+|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 7665554444321 13466666654
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.60 E-value=3.9e-05 Score=50.81 Aligned_cols=87 Identities=22% Similarity=0.153 Sum_probs=41.9
Q ss_pred CCCCccEEEccCccccccCCccccCCCCCcEEEcccC--cCCCCcchhhhCCCcccEEEeeccccccc-CchhhhCCCCC
Q 036127 25 YLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN--NLSGAIPKEIGNLTMLKGIYLEYNKLHGE-IPHEIANLLNL 101 (155)
Q Consensus 25 ~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L 101 (155)
.+..++.+.+.+..++ ....+..+++|+.|.++.| ++...++.....+++|+++++++|+++.. .-..+..+.+|
T Consensus 41 ~~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3445555555555544 1223455566666666666 33333333334446666666666665410 01122334455
Q ss_pred ceEEeeCccccc
Q 036127 102 EDLVLGMNILVG 113 (155)
Q Consensus 102 ~~l~l~~~~~~~ 113 (155)
..+++..|..+.
T Consensus 119 ~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 119 KSLDLFNCSVTN 130 (260)
T ss_pred hhhhcccCCccc
Confidence 555555554433
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.55 E-value=4.7e-05 Score=50.48 Aligned_cols=102 Identities=25% Similarity=0.290 Sum_probs=68.3
Q ss_pred CCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecc--cccccCchhhhCCCCCceEEeeCcccccc-CCccccCCCCCc
Q 036127 50 CKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYN--KLHGEIPHEIANLLNLEDLVLGMNILVGV-FPAAIFNMSTLK 126 (155)
Q Consensus 50 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~ 126 (155)
...++.+.+.+..++. -..+..+++|+.|.++.| .+.+.++-....+++|+++++++|.+... --..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3445555555555441 234567789999999999 55555555556679999999999988641 012345566788
Q ss_pred EEEccCCcccCCCC---cccccCCCccceec
Q 036127 127 VLMLINNSLSGSLP---SRIDLSLPTVEVLD 154 (155)
Q Consensus 127 ~l~l~~n~~~~~~~---~~~~~~~~~L~~l~ 154 (155)
.++++.|..+ ..- ..+|.-+++|.+||
T Consensus 120 ~Ldl~n~~~~-~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 120 SLDLFNCSVT-NLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcccCCcc-ccccHHHHHHHHhhhhcccc
Confidence 8999888776 333 23446688888876
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.46 E-value=0.001 Score=47.66 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=43.5
Q ss_pred CCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecc-cccccCch
Q 036127 25 YLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYN-KLHGEIPH 93 (155)
Q Consensus 25 ~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~ 93 (155)
.+.+++.|++++|.++ .+|. -..+|+.|.+.++.-....|+.+ ..+|+.|.+++| .+. .+|.
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~ 112 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE 112 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc
Confidence 3688999999999888 5552 23479999998865444556544 358999999988 443 3443
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.28 E-value=0.00028 Score=47.62 Aligned_cols=43 Identities=35% Similarity=0.452 Sum_probs=25.3
Q ss_pred cccCCCCCcEEEcccCcCCCCcch----hhhCCCcccEEEeeccccc
Q 036127 46 ALSKCKQLQQLNLQFNNLSGAIPK----EIGNLTMLKGIYLEYNKLH 88 (155)
Q Consensus 46 ~~~~~~~L~~l~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~ 88 (155)
++..|++++.+++++|.+....|. .++..+.+.+|.+.+|.+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 344567777777777766544443 2334455667767666543
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.00069 Score=46.37 Aligned_cols=84 Identities=24% Similarity=0.235 Sum_probs=43.2
Q ss_pred CCCCcEEEcccCcCCC--CcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccc-cCCccccCCCCCc
Q 036127 50 CKQLQQLNLQFNNLSG--AIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVG-VFPAAIFNMSTLK 126 (155)
Q Consensus 50 ~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~ 126 (155)
+..++.+|+.+|.++. ....-..++|++++|+++.|.+...+........+|+.+.+++..+.- .....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3566677777776652 112234456777777777776653332222234566777776664321 1122333444444
Q ss_pred EEEccCC
Q 036127 127 VLMLINN 133 (155)
Q Consensus 127 ~l~l~~n 133 (155)
.+.++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 4444444
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.47 E-value=0.0014 Score=26.54 Aligned_cols=17 Identities=47% Similarity=0.638 Sum_probs=10.4
Q ss_pred CcEEEccCCcccCCCCcc
Q 036127 125 LKVLMLINNSLSGSLPSR 142 (155)
Q Consensus 125 L~~l~l~~n~~~~~~~~~ 142 (155)
|+++++++|.++ .+|..
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 556666666666 55554
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.06 E-value=0.0046 Score=23.26 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=5.6
Q ss_pred CccEEEccCCccc
Q 036127 3 SISDIRLTNNRLS 15 (155)
Q Consensus 3 ~l~~l~l~~~~~~ 15 (155)
+|+.|++++|.++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 69
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.99 E-value=0.007 Score=25.39 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=12.8
Q ss_pred CCccEEEccCCcccccCCchhh
Q 036127 2 SSISDIRLTNNRLSGELPKNIG 23 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~ 23 (155)
++|+.|++++|.++ .+|..++
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5665554
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.99 E-value=0.007 Score=25.39 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=12.8
Q ss_pred CCccEEEccCCcccccCCchhh
Q 036127 2 SSISDIRLTNNRLSGELPKNIG 23 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~ 23 (155)
++|+.|++++|.++ .+|..++
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5665554
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.87 E-value=0.0081 Score=38.85 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=51.9
Q ss_pred CCCcEEEcccCcCCCCcchhhhCCCcccEEEeeccccccc-Cchhhh-CCCCCceEEeeCcc-ccccCCccccCCCCCcE
Q 036127 51 KQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGE-IPHEIA-NLLNLEDLVLGMNI-LVGVFPAAIFNMSTLKV 127 (155)
Q Consensus 51 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~-~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~ 127 (155)
..++.+|.++..+.++.-..+..++.++.+.+.++.--+. --+-++ -.++|+.|++.+|. |++.-...+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3467777777777666666677777777777776642111 011111 23678888888774 66544445566777777
Q ss_pred EEccCCcc
Q 036127 128 LMLINNSL 135 (155)
Q Consensus 128 l~l~~n~~ 135 (155)
+.+.+-..
T Consensus 181 L~l~~l~~ 188 (221)
T KOG3864|consen 181 LHLYDLPY 188 (221)
T ss_pred HHhcCchh
Confidence 77765443
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.58 E-value=0.009 Score=38.66 Aligned_cols=83 Identities=14% Similarity=0.007 Sum_probs=57.6
Q ss_pred CccEEEccCccccccCCccccCCCCCcEEEcccCcCC-CCcchhhh-CCCcccEEEeeccc-ccccCchhhhCCCCCceE
Q 036127 28 YLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLS-GAIPKEIG-NLTMLKGIYLEYNK-LHGEIPHEIANLLNLEDL 104 (155)
Q Consensus 28 ~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l 104 (155)
.++.++-+++.|.......+..++.++.+.+.++.-- ...-+.++ ..++|+.|++++|. ++......+..+++|+.+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4677888888887666666778888888888877532 11222222 35789999999774 555555667778888888
Q ss_pred EeeCcc
Q 036127 105 VLGMNI 110 (155)
Q Consensus 105 ~l~~~~ 110 (155)
.+.+-.
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 776543
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.11 E-value=0.026 Score=41.22 Aligned_cols=111 Identities=22% Similarity=0.087 Sum_probs=65.4
Q ss_pred CCCCccEEEccCcccccc--CCccccCCCCCcEEEcccC-cCCCCc----chhhhCCCcccEEEeeccc-ccccCchhhh
Q 036127 25 YLPYLKALFLDKNMFHGK--IPSALSKCKQLQQLNLQFN-NLSGAI----PKEIGNLTMLKGIYLEYNK-LHGEIPHEIA 96 (155)
Q Consensus 25 ~l~~l~~l~l~~n~~~~~--~~~~~~~~~~L~~l~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 96 (155)
..+.++.+.+..+..-.. .......++.|+.++++++ ...... ......+..++.++++++. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356677777766542212 2233456778888888763 111111 1233345778888888776 5444334443
Q ss_pred -CCCCCceEEeeCcc-cccc-CCccccCCCCCcEEEccCCcc
Q 036127 97 -NLLNLEDLVLGMNI-LVGV-FPAAIFNMSTLKVLMLINNSL 135 (155)
Q Consensus 97 -~~~~L~~l~l~~~~-~~~~-~~~~~~~~~~L~~l~l~~n~~ 135 (155)
.+++|+.+.+.++. +++. +......+++|+.++++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 37788888877776 4542 223345677888888887754
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.50 E-value=0.0019 Score=42.77 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=47.1
Q ss_pred CCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEE
Q 036127 26 LPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLV 105 (155)
Q Consensus 26 l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 105 (155)
+...+.||++.|+.. -....|+-++.+..++++.|.+. ..|.+++....+..++...|... ..|.+.+..+.++.++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 445556666666654 33444555555566666666555 44555555555555555555444 4566666666666666
Q ss_pred eeCcccc
Q 036127 106 LGMNILV 112 (155)
Q Consensus 106 l~~~~~~ 112 (155)
+.++.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 6666543
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.47 E-value=0.035 Score=22.67 Aligned_cols=14 Identities=21% Similarity=0.612 Sum_probs=7.0
Q ss_pred CCccEEEccCCccc
Q 036127 2 SSISDIRLTNNRLS 15 (155)
Q Consensus 2 ~~l~~l~l~~~~~~ 15 (155)
++|+.|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666555
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.27 E-value=0.056 Score=39.52 Aligned_cols=130 Identities=18% Similarity=0.150 Sum_probs=71.4
Q ss_pred CCccEEEccCCcccccCC-chhhcCCCCccEEEccCc-cccccCC----ccccCCCCCcEEEcccCc-CCCCcchhhhC-
Q 036127 2 SSISDIRLTNNRLSGELP-KNIGSYLPYLKALFLDKN-MFHGKIP----SALSKCKQLQQLNLQFNN-LSGAIPKEIGN- 73 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~-~~~~~~l~~l~~l~l~~n-~~~~~~~----~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~- 73 (155)
++++.+.+..+.-..... ..+....+.|+.++++++ ......+ .....+..++.+++..+. ++...-..+..
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 345555555542221211 123346788999998873 1111111 223446788889988887 55443333333
Q ss_pred CCcccEEEeeccc-ccccCch-hhhCCCCCceEEeeCcccc-c-cCCccccCCCCCcEEEcc
Q 036127 74 LTMLKGIYLEYNK-LHGEIPH-EIANLLNLEDLVLGMNILV-G-VFPAAIFNMSTLKVLMLI 131 (155)
Q Consensus 74 ~~~L~~L~l~~~~-~~~~~~~-~~~~~~~L~~l~l~~~~~~-~-~~~~~~~~~~~L~~l~l~ 131 (155)
++.|+.|.+.++. +++..-. ....++.|+++++.++... . ........+++++.+.+.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 7788888876665 4432222 2345778999999887542 1 122223446666665543
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.04 E-value=0.0012 Score=43.72 Aligned_cols=85 Identities=18% Similarity=0.107 Sum_probs=59.1
Q ss_pred CCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEE
Q 036127 49 KCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVL 128 (155)
Q Consensus 49 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 128 (155)
.....+.||++.|+.. .....|+.++.+..++++.|.+. ..|...++...++.+....|.... .|..++..+.++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchh
Confidence 3445667777777765 34445666677777788877776 677777777777777776676666 56677777888888
Q ss_pred EccCCccc
Q 036127 129 MLINNSLS 136 (155)
Q Consensus 129 ~l~~n~~~ 136 (155)
++-+|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 77777765
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=89.09 E-value=0.3 Score=20.53 Aligned_cols=18 Identities=50% Similarity=0.672 Sum_probs=14.3
Q ss_pred CCCcEEEccCCcccCCCCc
Q 036127 123 STLKVLMLINNSLSGSLPS 141 (155)
Q Consensus 123 ~~L~~l~l~~n~~~~~~~~ 141 (155)
++|+.|++++|.++ .+|.
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35788888888888 8876
No 79
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.92 E-value=0.13 Score=37.12 Aligned_cols=34 Identities=24% Similarity=0.156 Sum_probs=15.3
Q ss_pred CCceEEeeCcccc-ccCCccccCCCCCcEEEccCC
Q 036127 100 NLEDLVLGMNILV-GVFPAAIFNMSTLKVLMLINN 133 (155)
Q Consensus 100 ~L~~l~l~~~~~~-~~~~~~~~~~~~L~~l~l~~n 133 (155)
.+..+.+.+++.. ......+..+++|+.+++.++
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 4444555554432 212233344555555555544
No 80
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.47 E-value=0.13 Score=37.15 Aligned_cols=131 Identities=19% Similarity=0.062 Sum_probs=76.7
Q ss_pred cCCCCccEEEccCcc-ccccCCcc-ccCCCCCcEEEcccCc-CCCCc-chhhhCCCcccEEEeecccccc--cCchhhhC
Q 036127 24 SYLPYLKALFLDKNM-FHGKIPSA-LSKCKQLQQLNLQFNN-LSGAI-PKEIGNLTMLKGIYLEYNKLHG--EIPHEIAN 97 (155)
Q Consensus 24 ~~l~~l~~l~l~~n~-~~~~~~~~-~~~~~~L~~l~l~~~~-~~~~~-~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~ 97 (155)
..+.+++.++.+++. ++...-.+ ...+.+|+.+.+..++ ++... ...-+++++|+.+++..+.... .+...-.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 356778888887754 22222222 2356889999988876 33222 2233457788888887765431 12223346
Q ss_pred CCCCceEEeeCcc-ccccC----CccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127 98 LLNLEDLVLGMNI-LVGVF----PAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 98 ~~~L~~l~l~~~~-~~~~~----~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 154 (155)
++.|+.+.++.+. +++.- ...-+....+..+.+++++....-.-.....+++|+.++
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~ 432 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIE 432 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceee
Confidence 7889999888775 33321 122345677888888888765222222225667776655
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=87.32 E-value=0.53 Score=19.79 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=6.2
Q ss_pred CccEEEccCcccc
Q 036127 28 YLKALFLDKNMFH 40 (155)
Q Consensus 28 ~l~~l~l~~n~~~ 40 (155)
+|+.|+++.|.|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4444555555443
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=85.38 E-value=0.61 Score=35.01 Aligned_cols=61 Identities=34% Similarity=0.360 Sum_probs=27.8
Q ss_pred CccEEEccCCcccccCC--chhhcCCCCccEEEccCccccccCCccccCC--CCCcEEEcccCcCC
Q 036127 3 SISDIRLTNNRLSGELP--KNIGSYLPYLKALFLDKNMFHGKIPSALSKC--KQLQQLNLQFNNLS 64 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~--~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~--~~L~~l~l~~~~~~ 64 (155)
.+..+++++|.+. .+. +.+.+..|++..|+|++|........++... ..|+.|.+.+|++.
T Consensus 219 ~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 219 EILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred ceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 3455566666555 332 1122345666666666662211111112221 23556666666554
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=80.89 E-value=1.5 Score=18.58 Aligned_cols=14 Identities=43% Similarity=0.525 Sum_probs=11.3
Q ss_pred CCCcEEEccCCccc
Q 036127 123 STLKVLMLINNSLS 136 (155)
Q Consensus 123 ~~L~~l~l~~n~~~ 136 (155)
++|++|++++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46788889888886
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=69.31 E-value=3.5 Score=16.89 Aligned_cols=12 Identities=8% Similarity=0.343 Sum_probs=6.8
Q ss_pred CCCccEEEccCC
Q 036127 1 MSSISDIRLTNN 12 (155)
Q Consensus 1 ~~~l~~l~l~~~ 12 (155)
|++|+.|++++|
T Consensus 1 c~~L~~L~l~~C 12 (26)
T smart00367 1 CPNLRELDLSGC 12 (26)
T ss_pred CCCCCEeCCCCC
Confidence 345666666655
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=59.11 E-value=7.5 Score=35.36 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=28.9
Q ss_pred EccCCcccccCCchhhcCCCCccEEEccCcccc
Q 036127 8 RLTNNRLSGELPKNIGSYLPYLKALFLDKNMFH 40 (155)
Q Consensus 8 ~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~ 40 (155)
+|++|.|+ .++...+..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 57899999 899999988999999999999876
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.34 E-value=9.8 Score=29.01 Aligned_cols=12 Identities=33% Similarity=0.263 Sum_probs=5.8
Q ss_pred CCcccEEEeecc
Q 036127 74 LTMLKGIYLEYN 85 (155)
Q Consensus 74 ~~~L~~L~l~~~ 85 (155)
.+.+..|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 344455555544
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=41.87 E-value=20 Score=33.03 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=26.3
Q ss_pred EccCccccccCCccccCCCCCcEEEcccCcCC
Q 036127 33 FLDKNMFHGKIPSALSKCKQLQQLNLQFNNLS 64 (155)
Q Consensus 33 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~ 64 (155)
+|++|.|+...+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889998555667888999999999999875
No 88
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=33.60 E-value=15 Score=15.46 Aligned_cols=10 Identities=40% Similarity=0.551 Sum_probs=6.9
Q ss_pred cCCCccceec
Q 036127 145 LSLPTVEVLD 154 (155)
Q Consensus 145 ~~~~~L~~l~ 154 (155)
..+|+|++||
T Consensus 10 ~~LPqL~~LD 19 (26)
T smart00446 10 RLLPQLRKLD 19 (26)
T ss_pred HHCCccceec
Confidence 5577777776
Done!