Query 036127
Match_columns 155
No_of_seqs 120 out of 2009
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 16:28:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m19_A Variable lymphocyte rec 99.9 2.7E-23 9.2E-28 137.7 15.5 152 2-155 35-186 (251)
2 2o6q_A Variable lymphocyte rec 99.9 3.5E-23 1.2E-27 138.5 15.8 152 2-155 61-212 (270)
3 1ogq_A PGIP-2, polygalacturona 99.9 2E-23 6.8E-28 142.4 12.1 150 2-154 76-227 (313)
4 3rgz_A Protein brassinosteroid 99.9 4.1E-23 1.4E-27 155.3 14.4 152 2-155 490-711 (768)
5 3rfs_A Internalin B, repeat mo 99.9 1.4E-22 4.7E-27 135.8 15.5 151 1-155 62-212 (272)
6 4fcg_A Uncharacterized protein 99.9 6.7E-23 2.3E-27 140.6 13.8 85 68-154 199-283 (328)
7 2o6q_A Variable lymphocyte rec 99.9 2E-22 7E-27 134.8 15.5 152 2-155 37-188 (270)
8 1ozn_A Reticulon 4 receptor; N 99.9 1.5E-22 5.3E-27 136.3 14.6 130 25-155 103-232 (285)
9 4fcg_A Uncharacterized protein 99.9 6.4E-23 2.2E-27 140.7 12.9 151 2-155 150-308 (328)
10 1ozn_A Reticulon 4 receptor; N 99.9 1.9E-22 6.6E-27 135.8 14.7 151 3-155 57-208 (285)
11 1ogq_A PGIP-2, polygalacturona 99.9 6.7E-23 2.3E-27 139.8 12.3 151 2-155 101-275 (313)
12 3rgz_A Protein brassinosteroid 99.9 1.5E-22 5.1E-27 152.3 14.8 152 2-155 394-545 (768)
13 2v9t_B SLIT homolog 2 protein 99.9 3.3E-22 1.1E-26 130.1 13.3 146 5-155 14-159 (220)
14 2v70_A SLIT-2, SLIT homolog 2 99.9 6.9E-22 2.4E-26 128.6 13.4 146 5-155 14-160 (220)
15 3e6j_A Variable lymphocyte rec 99.9 1.8E-21 6.1E-26 127.4 14.4 144 5-154 22-165 (229)
16 3m19_A Variable lymphocyte rec 99.9 1.6E-21 5.6E-26 129.1 14.3 148 3-155 15-162 (251)
17 1p9a_G Platelet glycoprotein I 99.9 1.4E-21 4.8E-26 132.0 14.1 149 3-154 32-201 (290)
18 2z66_A Variable lymphocyte rec 99.9 7.8E-22 2.7E-26 134.0 12.7 152 2-155 101-255 (306)
19 1p9a_G Platelet glycoprotein I 99.9 1.4E-21 5E-26 132.0 13.5 149 1-154 9-178 (290)
20 2z66_A Variable lymphocyte rec 99.9 6.9E-22 2.4E-26 134.3 11.5 151 2-155 78-230 (306)
21 2o6s_A Variable lymphocyte rec 99.9 2.5E-21 8.4E-26 124.9 13.3 133 3-136 29-161 (208)
22 2v9t_B SLIT homolog 2 protein 99.9 2E-21 7E-26 126.4 12.5 134 2-136 32-165 (220)
23 2o6s_A Variable lymphocyte rec 99.9 6.3E-21 2.1E-25 123.0 14.6 146 5-155 10-155 (208)
24 4ezg_A Putative uncharacterize 99.9 1.9E-21 6.4E-26 124.6 11.3 144 2-155 44-188 (197)
25 2v70_A SLIT-2, SLIT homolog 2 99.9 3.5E-21 1.2E-25 125.3 12.5 136 3-138 33-168 (220)
26 2id5_A Lingo-1, leucine rich r 99.9 2.4E-21 8.1E-26 138.7 12.7 151 2-154 32-182 (477)
27 3rfs_A Internalin B, repeat mo 99.9 8.5E-21 2.9E-25 127.1 14.5 139 1-140 84-222 (272)
28 3v47_A TOLL-like receptor 5B a 99.9 1.4E-21 4.8E-26 139.1 10.5 128 27-155 275-402 (455)
29 2z80_A TOLL-like receptor 2, v 99.9 3.6E-21 1.2E-25 133.2 11.1 151 2-155 52-205 (353)
30 3e6j_A Variable lymphocyte rec 99.9 2E-20 6.7E-25 122.4 13.9 136 2-139 40-175 (229)
31 3zyj_A Leucine-rich repeat-con 99.9 1.2E-20 4E-25 134.1 13.7 151 1-155 111-286 (440)
32 2id5_A Lingo-1, leucine rich r 99.9 5.8E-21 2E-25 136.8 11.9 153 1-155 55-207 (477)
33 1wwl_A Monocyte differentiatio 99.9 2.2E-21 7.5E-26 132.3 9.1 153 2-155 95-260 (312)
34 3vq2_A TLR4, TOLL-like recepto 99.9 4.1E-21 1.4E-25 141.0 11.2 152 2-155 399-552 (606)
35 2xot_A Amphoterin-induced prot 99.9 4.4E-21 1.5E-25 133.2 10.7 145 3-149 40-188 (361)
36 3vq2_A TLR4, TOLL-like recepto 99.9 4.7E-21 1.6E-25 140.6 11.4 151 2-155 376-528 (606)
37 2xwt_C Thyrotropin receptor; s 99.9 5.2E-21 1.8E-25 125.8 10.5 147 3-154 32-185 (239)
38 2z62_A TOLL-like receptor 4, v 99.9 9.1E-21 3.1E-25 127.1 11.5 151 3-155 53-231 (276)
39 3zyi_A Leucine-rich repeat-con 99.9 2.1E-20 7.3E-25 133.1 13.9 151 1-155 122-297 (452)
40 2z62_A TOLL-like receptor 4, v 99.9 1.9E-20 6.5E-25 125.5 12.9 139 1-140 75-241 (276)
41 3zyj_A Leucine-rich repeat-con 99.9 1.6E-20 5.6E-25 133.3 13.2 153 1-155 87-262 (440)
42 2xot_A Amphoterin-induced prot 99.8 1.8E-20 6.1E-25 130.1 12.9 146 5-155 21-170 (361)
43 2xwt_C Thyrotropin receptor; s 99.8 6.7E-21 2.3E-25 125.3 10.2 150 1-155 54-212 (239)
44 4g8a_A TOLL-like receptor 4; l 99.8 4.2E-21 1.5E-25 141.1 10.2 137 3-140 53-190 (635)
45 3v47_A TOLL-like receptor 5B a 99.8 2.4E-20 8.2E-25 132.7 13.7 88 67-155 291-378 (455)
46 3o6n_A APL1; leucine-rich repe 99.8 2.9E-20 1E-24 130.1 13.5 148 2-154 45-192 (390)
47 3zyi_A Leucine-rich repeat-con 99.8 2.4E-20 8.3E-25 132.8 12.9 151 1-155 98-273 (452)
48 4g8a_A TOLL-like receptor 4; l 99.8 2.2E-20 7.4E-25 137.3 13.0 145 6-155 35-180 (635)
49 2z81_A CD282 antigen, TOLL-lik 99.8 1.1E-20 3.7E-25 137.3 11.0 151 2-154 26-178 (549)
50 2z80_A TOLL-like receptor 2, v 99.8 3.7E-21 1.3E-25 133.1 8.2 153 1-155 75-229 (353)
51 1xku_A Decorin; proteoglycan, 99.8 7.5E-20 2.6E-24 125.5 14.1 147 3-155 122-270 (330)
52 4eco_A Uncharacterized protein 99.8 5.1E-21 1.7E-25 141.4 8.6 133 18-154 198-359 (636)
53 3o6n_A APL1; leucine-rich repe 99.8 9.4E-20 3.2E-24 127.6 14.6 110 2-112 69-178 (390)
54 3oja_B Anopheles plasmodium-re 99.8 8E-20 2.7E-24 134.2 14.3 85 25-109 97-181 (597)
55 1w8a_A SLIT protein; signaling 99.8 6.5E-20 2.2E-24 117.0 12.2 132 5-140 11-143 (192)
56 3t6q_A CD180 antigen; protein- 99.8 2.8E-20 9.7E-25 136.5 11.8 150 2-154 376-529 (606)
57 2z63_A TOLL-like receptor 4, v 99.8 2.6E-20 8.9E-25 135.7 11.4 151 2-155 373-525 (570)
58 3oja_B Anopheles plasmodium-re 99.8 6.9E-20 2.4E-24 134.5 13.4 148 2-154 51-198 (597)
59 3t6q_A CD180 antigen; protein- 99.8 8.9E-20 3.1E-24 133.9 13.5 133 2-136 278-413 (606)
60 1ziw_A TOLL-like receptor 3; i 99.8 7.3E-20 2.5E-24 136.0 13.1 153 2-155 25-178 (680)
61 2ell_A Acidic leucine-rich nuc 99.8 9.2E-20 3.1E-24 113.9 11.1 136 2-141 24-164 (168)
62 2wfh_A SLIT homolog 2 protein 99.8 1.9E-19 6.5E-24 114.9 12.7 127 5-136 13-139 (193)
63 4eco_A Uncharacterized protein 99.8 8.9E-21 3.1E-25 140.1 7.4 150 1-154 205-383 (636)
64 2z7x_B TOLL-like receptor 1, v 99.8 1E-19 3.5E-24 131.5 12.5 149 2-155 324-475 (520)
65 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-19 3.6E-24 124.9 11.7 75 79-155 197-271 (332)
66 1ziw_A TOLL-like receptor 3; i 99.8 3.1E-19 1.1E-23 132.6 14.9 153 2-155 405-591 (680)
67 1h6t_A Internalin B; cell adhe 99.8 4.6E-19 1.6E-23 119.8 14.2 140 2-155 68-207 (291)
68 2z63_A TOLL-like receptor 4, v 99.8 6.5E-20 2.2E-24 133.6 10.5 146 3-150 29-175 (570)
69 1wwl_A Monocyte differentiatio 99.8 9.4E-20 3.2E-24 124.2 10.0 147 2-154 121-280 (312)
70 4ecn_A Leucine-rich repeat pro 99.8 5.4E-20 1.8E-24 139.4 9.5 150 1-155 447-626 (876)
71 2z81_A CD282 antigen, TOLL-lik 99.8 5.2E-20 1.8E-24 133.7 8.9 152 1-154 49-202 (549)
72 1xku_A Decorin; proteoglycan, 99.8 8.3E-19 2.8E-23 120.3 14.2 131 2-136 52-184 (330)
73 1h6u_A Internalin H; cell adhe 99.8 1.3E-18 4.4E-23 118.4 14.6 124 2-136 63-186 (308)
74 4ecn_A Leucine-rich repeat pro 99.8 9.7E-20 3.3E-24 138.1 9.9 133 18-155 440-602 (876)
75 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.4E-19 1.2E-23 130.0 12.2 149 2-155 353-504 (562)
76 2o6r_A Variable lymphocyte rec 99.8 8.8E-19 3E-23 110.3 12.4 133 4-140 9-141 (177)
77 2je0_A Acidic leucine-rich nuc 99.8 2.2E-19 7.6E-24 110.0 8.8 128 25-155 15-147 (149)
78 2ft3_A Biglycan; proteoglycan, 99.8 9.2E-19 3.1E-23 120.2 12.8 151 3-155 55-248 (332)
79 4ezg_A Putative uncharacterize 99.8 8.2E-19 2.8E-23 112.2 11.7 129 1-136 65-194 (197)
80 3j0a_A TOLL-like receptor 5; m 99.8 6.4E-19 2.2E-23 133.8 13.0 141 2-143 24-168 (844)
81 3j0a_A TOLL-like receptor 5; m 99.8 2.3E-19 7.9E-24 136.2 10.5 142 2-143 48-194 (844)
82 2ell_A Acidic leucine-rich nuc 99.8 8.9E-19 3E-23 109.4 11.2 128 25-155 22-154 (168)
83 1xeu_A Internalin C; cellular 99.8 1.7E-18 5.8E-23 115.4 12.9 139 2-155 41-179 (263)
84 2z7x_B TOLL-like receptor 1, v 99.8 9.5E-19 3.3E-23 126.4 12.5 127 25-155 322-451 (520)
85 1h6u_A Internalin H; cell adhe 99.8 2.6E-18 9E-23 116.9 14.0 141 1-155 84-224 (308)
86 2je0_A Acidic leucine-rich nuc 99.8 6.5E-19 2.2E-23 107.9 9.2 128 2-132 17-149 (149)
87 4glp_A Monocyte differentiatio 99.8 5.2E-19 1.8E-23 120.4 9.5 145 3-155 146-301 (310)
88 1h6t_A Internalin B; cell adhe 99.8 3.6E-18 1.2E-22 115.4 13.4 140 2-155 46-185 (291)
89 1m9s_A Internalin B; cell inva 99.8 5.4E-18 1.9E-22 124.5 15.3 141 1-155 64-204 (605)
90 3o53_A Protein LRIM1, AGAP0063 99.8 6E-19 2.1E-23 120.5 8.9 125 26-155 119-244 (317)
91 4fmz_A Internalin; leucine ric 99.8 6.4E-18 2.2E-22 116.5 14.0 141 3-155 200-340 (347)
92 3o53_A Protein LRIM1, AGAP0063 99.8 1.2E-19 4.2E-24 123.9 5.3 148 1-154 119-268 (317)
93 3oja_A Leucine-rich immune mol 99.8 6.5E-19 2.2E-23 126.6 9.2 144 3-155 100-244 (487)
94 4glp_A Monocyte differentiatio 99.8 4.4E-19 1.5E-23 120.8 7.9 148 3-154 92-278 (310)
95 3oja_A Leucine-rich immune mol 99.8 1.6E-18 5.4E-23 124.6 10.6 146 3-155 35-221 (487)
96 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3E-18 1E-22 125.0 12.1 128 24-155 350-480 (562)
97 1w8a_A SLIT protein; signaling 99.8 6.4E-18 2.2E-22 107.7 11.4 123 29-155 10-133 (192)
98 2wfh_A SLIT homolog 2 protein 99.8 1.5E-17 5E-22 106.1 12.5 122 29-155 12-133 (193)
99 2ast_B S-phase kinase-associat 99.8 2E-19 6.7E-24 123.5 3.6 151 2-154 93-253 (336)
100 4fmz_A Internalin; leucine ric 99.8 2E-17 7E-22 114.0 13.2 142 2-155 177-318 (347)
101 1o6v_A Internalin A; bacterial 99.7 5.2E-17 1.8E-21 116.1 14.4 139 3-155 244-382 (466)
102 1a9n_A U2A', U2A'; complex (nu 99.7 6.6E-18 2.3E-22 106.2 8.7 129 2-136 19-153 (176)
103 1m9s_A Internalin B; cell inva 99.7 2.2E-17 7.4E-22 121.3 12.4 140 2-155 43-182 (605)
104 2o6r_A Variable lymphocyte rec 99.7 7.2E-17 2.5E-21 101.5 12.4 124 28-155 8-131 (177)
105 2ast_B S-phase kinase-associat 99.7 1.8E-18 6.2E-23 118.7 5.3 153 1-155 117-279 (336)
106 1a9n_A U2A', U2A'; complex (nu 99.7 2.5E-17 8.6E-22 103.5 9.0 125 25-155 17-147 (176)
107 1ds9_A Outer arm dynein; leuci 99.7 7.4E-20 2.5E-24 117.2 -3.5 146 3-154 19-180 (198)
108 1o6v_A Internalin A; bacterial 99.7 2.9E-16 1E-20 112.2 14.7 120 25-155 241-360 (466)
109 4b8c_D Glucose-repressible alc 99.7 2E-18 6.8E-23 129.2 3.5 112 25-140 222-333 (727)
110 1xeu_A Internalin C; cellular 99.7 2.1E-16 7.2E-21 105.3 11.5 128 1-141 62-189 (263)
111 1dce_A Protein (RAB geranylger 99.7 1.8E-16 6E-21 115.8 11.9 122 28-155 442-567 (567)
112 4b8c_D Glucose-repressible alc 99.7 2.8E-17 9.4E-22 123.1 7.6 137 2-143 224-361 (727)
113 3bz5_A Internalin-J, INLJ; leu 99.7 7.9E-16 2.7E-20 109.9 13.6 117 2-133 42-158 (457)
114 2ca6_A RAN GTPase-activating p 99.7 2.7E-18 9.2E-23 120.1 0.6 107 49-155 185-310 (386)
115 3cvr_A Invasion plasmid antige 99.7 5.8E-16 2E-20 113.0 12.7 130 3-155 101-237 (571)
116 3goz_A Leucine-rich repeat-con 99.7 2E-17 6.7E-22 114.9 4.9 133 3-136 23-180 (362)
117 2ca6_A RAN GTPase-activating p 99.7 1.2E-17 4E-22 116.8 3.2 17 119-135 212-228 (386)
118 3bz5_A Internalin-J, INLJ; leu 99.7 1.6E-15 5.6E-20 108.2 14.2 136 2-154 85-239 (457)
119 1dce_A Protein (RAB geranylger 99.7 6.9E-16 2.4E-20 112.7 12.2 122 3-130 442-567 (567)
120 3g39_A Variable lymphocyte rec 99.7 8.3E-16 2.8E-20 96.1 10.7 107 4-114 11-117 (170)
121 4ay9_X Follicle-stimulating ho 99.7 4.6E-16 1.6E-20 107.6 10.4 151 2-155 30-209 (350)
122 3g39_A Variable lymphocyte rec 99.7 1.6E-15 5.5E-20 94.8 10.7 107 28-137 10-116 (170)
123 3goz_A Leucine-rich repeat-con 99.7 3.6E-17 1.2E-21 113.5 3.4 79 76-154 168-259 (362)
124 4ay9_X Follicle-stimulating ho 99.7 8.2E-16 2.8E-20 106.3 9.8 152 1-154 53-232 (350)
125 2r9u_A Variable lymphocyte rec 99.6 3.5E-15 1.2E-19 93.7 11.4 105 5-113 15-119 (174)
126 2r9u_A Variable lymphocyte rec 99.6 3E-15 1E-19 93.9 10.6 109 29-141 14-122 (174)
127 3cvr_A Invasion plasmid antige 99.6 7.7E-15 2.6E-19 107.1 13.5 95 3-113 60-154 (571)
128 3sb4_A Hypothetical leucine ri 99.6 3.6E-15 1.2E-19 102.3 10.9 149 1-154 100-327 (329)
129 1z7x_W Ribonuclease inhibitor; 99.6 2.2E-17 7.7E-22 117.6 -0.4 79 76-155 314-405 (461)
130 1jl5_A Outer protein YOPM; leu 99.6 1.6E-14 5.3E-19 103.1 13.4 112 28-154 132-243 (454)
131 3g06_A SSPH2 (leucine-rich rep 99.6 2.4E-14 8.1E-19 105.5 13.9 71 75-155 221-291 (622)
132 1ds9_A Outer arm dynein; leuci 99.6 7E-17 2.4E-21 103.3 -0.4 128 1-136 47-185 (198)
133 1jl5_A Outer protein YOPM; leu 99.6 3.8E-14 1.3E-18 101.1 13.3 123 2-140 131-253 (454)
134 1z7x_W Ribonuclease inhibitor; 99.6 2.4E-16 8.3E-21 112.2 1.9 112 2-113 56-184 (461)
135 3sb4_A Hypothetical leucine ri 99.5 2.8E-14 9.6E-19 97.8 9.4 150 1-154 48-303 (329)
136 3g06_A SSPH2 (leucine-rich rep 99.5 2E-13 6.9E-18 100.7 13.4 94 4-113 42-135 (622)
137 2ifg_A High affinity nerve gro 99.5 2.9E-13 1E-17 93.3 9.9 104 6-113 12-117 (347)
138 2ifg_A High affinity nerve gro 99.5 2.8E-13 9.5E-18 93.4 9.4 103 31-136 12-116 (347)
139 3ogk_B Coronatine-insensitive 99.4 2.5E-14 8.6E-19 104.7 0.9 105 48-152 433-542 (592)
140 3ogk_B Coronatine-insensitive 99.4 1.8E-13 6E-18 100.3 4.4 39 116-154 286-324 (592)
141 3un9_A NLR family member X1; l 99.4 3.2E-14 1.1E-18 99.1 0.4 86 51-136 155-252 (372)
142 3un9_A NLR family member X1; l 99.4 1.4E-14 4.7E-19 101.0 -2.2 154 2-155 72-246 (372)
143 4fdw_A Leucine rich hypothetic 99.3 1.5E-11 5.3E-16 86.4 11.1 145 1-153 179-328 (401)
144 2p1m_B Transport inhibitor res 99.2 4E-13 1.4E-17 98.4 -1.3 39 98-136 455-494 (594)
145 2p1m_B Transport inhibitor res 99.2 6.8E-12 2.3E-16 91.9 4.3 34 121-154 287-320 (594)
146 4fdw_A Leucine rich hypothetic 99.2 2.2E-10 7.4E-15 80.6 10.8 122 27-153 248-375 (401)
147 2ra8_A Uncharacterized protein 99.0 9E-10 3.1E-14 76.4 5.5 150 2-155 139-314 (362)
148 1io0_A Tropomodulin; LRR prote 98.8 1.5E-09 5.2E-14 68.5 2.1 112 25-136 34-164 (185)
149 2ra8_A Uncharacterized protein 98.8 9E-09 3.1E-13 71.4 5.8 132 1-136 171-320 (362)
150 3rw6_A Nuclear RNA export fact 98.7 1.1E-08 3.6E-13 68.1 4.7 81 73-154 168-257 (267)
151 3e4g_A ATP synthase subunit S, 98.7 1.3E-08 4.6E-13 63.4 3.9 86 51-136 61-153 (176)
152 1io0_A Tropomodulin; LRR prote 98.7 8E-09 2.7E-13 65.2 2.7 111 2-113 36-165 (185)
153 3rw6_A Nuclear RNA export fact 98.7 4.2E-09 1.4E-13 70.0 0.9 80 48-129 167-257 (267)
154 4fs7_A Uncharacterized protein 98.6 4.7E-07 1.6E-11 63.5 10.7 101 47-153 293-393 (394)
155 3e4g_A ATP synthase subunit S, 98.6 3.7E-08 1.3E-12 61.4 4.3 87 27-113 61-154 (176)
156 4h09_A Hypothetical leucine ri 98.6 6.6E-07 2.3E-11 62.3 10.6 112 18-132 231-342 (379)
157 4fs7_A Uncharacterized protein 98.6 7.6E-07 2.6E-11 62.4 10.6 143 3-155 231-373 (394)
158 4h09_A Hypothetical leucine ri 98.5 3E-06 1E-10 58.9 12.3 129 22-155 212-340 (379)
159 4gt6_A Cell surface protein; l 98.4 1.9E-06 6.4E-11 60.4 9.5 115 17-135 255-369 (394)
160 4gt6_A Cell surface protein; l 98.4 4.2E-06 1.4E-10 58.6 10.3 126 2-135 265-390 (394)
161 3rfe_A Platelet glycoprotein I 97.8 6.4E-05 2.2E-09 44.5 5.9 56 6-64 12-68 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00016 5.4E-09 45.9 3.6 110 26-135 40-169 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.00081 2.8E-08 39.7 5.2 57 54-112 11-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 96.5 0.0025 8.6E-08 40.4 3.7 87 47-133 37-136 (197)
165 2lz0_A Uncharacterized protein 89.6 1.1 3.8E-05 24.9 5.1 43 17-60 10-52 (100)
166 2lz0_A Uncharacterized protein 84.5 1.9 6.5E-05 23.9 4.2 46 39-85 8-53 (100)
No 1
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=2.7e-23 Score=137.71 Aligned_cols=152 Identities=24% Similarity=0.243 Sum_probs=129.0
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
.+++.|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..|..+++|+.|+
T Consensus 35 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 35888999999998 55555555899999999999999977777788999999999999999866667788999999999
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.++ .++...+..+++|++|++
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEe
Confidence 9999998665666788999999999999999876667889999999999999999 555544488999998875
No 2
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.5e-23 Score=138.54 Aligned_cols=152 Identities=28% Similarity=0.319 Sum_probs=91.6
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
++|+.|++++|.++ .++..++..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|+
T Consensus 61 ~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp TTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 44555666666555 55555544556666666666666544344455566666666666666544445556666666666
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+++|.+++..+..+..+++|+.+++.+|.++...+..+..+++|+.+++++|.++ .+|...+..+++|++|++
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEe
Confidence 6666666444444566666777777777666655555666677777777777776 555444466666666654
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=2e-23 Score=142.44 Aligned_cols=150 Identities=27% Similarity=0.445 Sum_probs=74.1
Q ss_pred CCccEEEccC-CcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 2 SSISDIRLTN-NRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 2 ~~l~~l~l~~-~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
++|+.|++++ |.+.+.+|..+. .+++|++|++++|.+++..|..+..+++|++|++++|.+....|..+..+++|+.|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 3445555552 444444444443 45555555555555544445555555555555555555544444555555555555
Q ss_pred EeecccccccCchhhhCCC-CCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127 81 YLEYNKLHGEIPHEIANLL-NLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 154 (155)
++++|.+++..|..+..++ .|+.+++++|.+++..|..+..++ |+.+++++|.+++..|..+ ..+++|++|+
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~ 227 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF-GSDKNTQKIH 227 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGC-CTTSCCSEEE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHH-hcCCCCCEEE
Confidence 5555555544555555554 555555555555444444444443 4444444444443333333 4445554444
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=4.1e-23 Score=155.31 Aligned_cols=152 Identities=36% Similarity=0.562 Sum_probs=97.7
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchh-----------
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKE----------- 70 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~----------- 70 (155)
++|+.|++++|.+++.+|..+. .+++|++|++++|.+.+..|..+..+++|+.+++++|.+....|..
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 4455556666655544554444 4566666666666665555555666666666666665544333322
Q ss_pred -----------------------------------------------------------hhCCCcccEEEeecccccccC
Q 036127 71 -----------------------------------------------------------IGNLTMLKGIYLEYNKLHGEI 91 (155)
Q Consensus 71 -----------------------------------------------------------~~~~~~L~~L~l~~~~~~~~~ 91 (155)
++.+++|+.|++++|.+++..
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 222345666777777777677
Q ss_pred chhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 92 PHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 92 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
|..++.++.|+.+++++|.+++.+|..++.+++|+.|++++|.++|.+|..+ +.++.|++||+
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l-~~l~~L~~L~l 711 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM-SALTMLTEIDL 711 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG-GGCCCCSEEEC
T ss_pred CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEEC
Confidence 7777777777777777777777777777777777777777777777777766 77777777764
No 5
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.4e-22 Score=135.78 Aligned_cols=151 Identities=24% Similarity=0.259 Sum_probs=122.3
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
+++|+.|++++|.++ .++ .+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus 62 l~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 62 LPNVRYLALGGNKLH-DIS-ALK-ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp CTTCCEEECTTSCCC-CCG-GGT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCC-Cch-hhc-CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence 467888999988888 443 344 78899999999999886666667888999999999998886666668888999999
Q ss_pred EeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.++ .++...+..+++|++|++
T Consensus 139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWL 212 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC-ccCHHHHhCCcCCCEEEc
Confidence 99999888666666788899999999999998876667788899999999999998 455444478888888875
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=6.7e-23 Score=140.65 Aligned_cols=85 Identities=31% Similarity=0.348 Sum_probs=35.9
Q ss_pred chhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCC
Q 036127 68 PKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSL 147 (155)
Q Consensus 68 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 147 (155)
|..++.+++|+.|++++|.++ .+|..+..+++|+.+++++|.+.+.+|..+..+++|+.+++++|.+.+.+|..+ ..+
T Consensus 199 p~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~l 276 (328)
T 4fcg_A 199 PASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI-HRL 276 (328)
T ss_dssp CGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG-GGC
T ss_pred hHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh-hcC
Confidence 333444444444444444443 233334444444444444444443344444444444444444444433444433 444
Q ss_pred Cccceec
Q 036127 148 PTVEVLD 154 (155)
Q Consensus 148 ~~L~~l~ 154 (155)
++|++|+
T Consensus 277 ~~L~~L~ 283 (328)
T 4fcg_A 277 TQLEKLD 283 (328)
T ss_dssp TTCCEEE
T ss_pred CCCCEEe
Confidence 4444443
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2e-22 Score=134.80 Aligned_cols=152 Identities=26% Similarity=0.305 Sum_probs=128.0
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
++++.|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus 37 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 35889999999998 67766555899999999999999855555578899999999999998866666788899999999
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+++|.+++..+..+..+++|+++++++|.+++..+..+..+++|+.+++++|.++ .++...+..+++|++|++
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-EeChhHhccCCCcCEEEC
Confidence 9999998776777888999999999999998866667889999999999999998 666654488999998875
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=1.5e-22 Score=136.27 Aligned_cols=130 Identities=27% Similarity=0.310 Sum_probs=63.6
Q ss_pred CCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceE
Q 036127 25 YLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDL 104 (155)
Q Consensus 25 ~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 104 (155)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.+
T Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 182 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182 (285)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEE
Confidence 44444444444444443333344444455555555554443333334445555555555555543333334445555555
Q ss_pred EeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 105 VLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
++.+|.+++..|..+..+++|+.+++++|.++ .++...+..+++|++|++
T Consensus 183 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRL 232 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEEC
T ss_pred ECCCCcccccCHhHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEec
Confidence 55555555544555555555555555555555 333332255555555543
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=6.4e-23 Score=140.75 Aligned_cols=151 Identities=21% Similarity=0.255 Sum_probs=127.5
Q ss_pred CCccEEEccCCcccccCCchhh--------cCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhC
Q 036127 2 SSISDIRLTNNRLSGELPKNIG--------SYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGN 73 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~--------~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 73 (155)
++|+.|++++|.+.+.+|..+. ..+++|++|++++|.++ .+|..+..+++|+.|++++|.+. ..|..+..
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~ 227 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH 227 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc
Confidence 4566666666655555665543 13677777777777777 67778888999999999999998 56677999
Q ss_pred CCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCcccee
Q 036127 74 LTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL 153 (155)
Q Consensus 74 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l 153 (155)
+++|+.|++++|.+.+..|..+..+++|+.+++.+|.+.+.+|..+..+++|+.+++++|.+.+.+|..+ +.+++|+.+
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l-~~L~~L~~l 306 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI-AQLPANCII 306 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG-GGSCTTCEE
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH-hhccCceEE
Confidence 9999999999999988999999999999999999999888899899999999999999999988999988 889999887
Q ss_pred cC
Q 036127 154 DC 155 (155)
Q Consensus 154 ~l 155 (155)
++
T Consensus 307 ~l 308 (328)
T 4fcg_A 307 LV 308 (328)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=1.9e-22 Score=135.78 Aligned_cols=151 Identities=23% Similarity=0.239 Sum_probs=74.4
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCcc-ccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNM-FHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
+|+.|++++|.++ .++...+..+++|++|++++|. +....+..+..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus 57 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 57 NLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 4444444444444 2222222244455555555543 4433344444455555555555555433344445555555555
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.+++..|..+ ..+++|+.|++
T Consensus 136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l 208 (285)
T 1ozn_A 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYL 208 (285)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEEC
T ss_pred CCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHc-cCcccccEeeC
Confidence 55555553333344555555555555555555444445555556666666665553334444 55566665553
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=6.7e-23 Score=139.82 Aligned_cols=151 Identities=25% Similarity=0.393 Sum_probs=81.0
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCC-cccEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLT-MLKGI 80 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~L~~L 80 (155)
++|+.|++++|.+++.+|..+. .+++|++|++++|.+.+..|..+..+++|++|++++|.+....|..+..++ +|+.|
T Consensus 101 ~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 101 TQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179 (313)
T ss_dssp TTCSEEEEEEECCEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred CCCCEEECcCCeeCCcCCHHHh-CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence 4566666666666545555444 566666666666666555555566666666666666655544455555554 55555
Q ss_pred EeecccccccCchhh-----------------------hCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccC
Q 036127 81 YLEYNKLHGEIPHEI-----------------------ANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSG 137 (155)
Q Consensus 81 ~l~~~~~~~~~~~~~-----------------------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (155)
++++|.+++..|..+ ..+++|+.+++.+|.+++..+ .+..+++|+++++++|.+++
T Consensus 180 ~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 180 TISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp ECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEE
T ss_pred ECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccC
Confidence 555555544444444 444444444444444443222 23444555555555555555
Q ss_pred CCCcccccCCCccceecC
Q 036127 138 SLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 138 ~~~~~~~~~~~~L~~l~l 155 (155)
.+|..+ ..+++|++|++
T Consensus 259 ~~p~~l-~~l~~L~~L~L 275 (313)
T 1ogq_A 259 TLPQGL-TQLKFLHSLNV 275 (313)
T ss_dssp CCCGGG-GGCTTCCEEEC
T ss_pred cCChHH-hcCcCCCEEEC
Confidence 555544 55555555553
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1.5e-22 Score=152.27 Aligned_cols=152 Identities=34% Similarity=0.539 Sum_probs=108.6
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
++|+.|++++|.+++.+|..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+....|..+..+++|+.|+
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCccEEECCCCccccccCHHHh-cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 3466677777776655665555 677777777777777766677777777777777777777666666777777777777
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+++|.+++..|..+..+++|+.+++++|++++.+|..+..+++|+.+++++|.+++.+|..+ +.+++|++||+
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~L 545 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL-GDCRSLIWLDL 545 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG-GGCTTCCEEEC
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH-cCCCCCCEEEC
Confidence 77777776677777777777777777777776677777777777777777777776777666 66777777664
No 13
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.89 E-value=3.3e-22 Score=130.13 Aligned_cols=146 Identities=22% Similarity=0.306 Sum_probs=100.3
Q ss_pred cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeec
Q 036127 5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY 84 (155)
Q Consensus 5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 84 (155)
+.++++++.++ .+|..+. ++++.|++++|.++...+..|..+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 45667777777 6666543 5677777777777755555677777777777777777655566777777777777777
Q ss_pred ccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 85 NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
|.++...+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.++ .++...+..+++|+.|++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEe
Confidence 7777444444566777777777777777766667777777777777777777 444443366777776654
No 14
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.88 E-value=6.9e-22 Score=128.63 Aligned_cols=146 Identities=21% Similarity=0.322 Sum_probs=102.8
Q ss_pred cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCC-ccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127 5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIP-SALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83 (155)
Q Consensus 5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 83 (155)
+.++++++.++ .+|..+. +.++.|++++|.+++..+ ..|..+++|+.|++++|.+....+..|..+++|+.|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 46777777777 6776543 456777777777775433 346677777788887777775555567777777777877
Q ss_pred cccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 84 YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.+++++|.+++..|..+ ..+++|+.|++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L 160 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF-DTLHSLSTLNL 160 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT-TTCTTCCEEEC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh-cCCCCCCEEEe
Confidence 777776656667777777777777777777666777777777788887777774445544 67777777764
No 15
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.88 E-value=1.8e-21 Score=127.39 Aligned_cols=144 Identities=23% Similarity=0.263 Sum_probs=76.4
Q ss_pred cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeec
Q 036127 5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY 84 (155)
Q Consensus 5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 84 (155)
+.++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus 22 ~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 34555555555 5554332 5555555555555544455555555555566555555533334445555555555555
Q ss_pred ccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127 85 NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 154 (155)
|.+++..+..+..+++|+.|++++|.++. +|..+..+++|+.+++++|.++ .+|...+..+++|+.|+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEE
Confidence 55554333444555555555555555553 4445555555555555555555 44433335555555554
No 16
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.6e-21 Score=129.13 Aligned_cols=148 Identities=23% Similarity=0.241 Sum_probs=131.0
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
+.+.++++++.++ .+|..+. +.++.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4678999999999 8887765 68999999999999777778999999999999999999777777899999999999
Q ss_pred ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|...+..+++|++|++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEEC
Confidence 999999766777889999999999999999877777899999999999999999 666644488999999986
No 17
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.4e-21 Score=132.04 Aligned_cols=149 Identities=22% Similarity=0.244 Sum_probs=72.6
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccc---------------------cCCccccCCCCCcEEEcccC
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHG---------------------KIPSALSKCKQLQQLNLQFN 61 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~---------------------~~~~~~~~~~~L~~l~l~~~ 61 (155)
+++.|++++|.++ .++...+..+++|+.|++++|.++. ..|..+..+++|+.|++++|
T Consensus 32 ~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 32 DTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp TCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS
T ss_pred CCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCC
Confidence 4555566666555 3333333245555555555555442 33444444455555555555
Q ss_pred cCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCc
Q 036127 62 NLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPS 141 (155)
Q Consensus 62 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 141 (155)
.+....+..|..+++|+.|++++|.+++..+..+..+++|+.+++++|+++...+..+..+++|+.+++++|.++ .+|.
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~ 189 (290)
T 1p9a_G 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189 (290)
T ss_dssp CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccCh
Confidence 554333344555555555555555554333333444555555555555555433334445555555555555555 5554
Q ss_pred ccccCCCccceec
Q 036127 142 RIDLSLPTVEVLD 154 (155)
Q Consensus 142 ~~~~~~~~L~~l~ 154 (155)
.+ ...++|+.++
T Consensus 190 ~~-~~~~~L~~l~ 201 (290)
T 1p9a_G 190 GF-FGSHLLPFAF 201 (290)
T ss_dssp TT-TTTCCCSEEE
T ss_pred hh-cccccCCeEE
Confidence 44 3344444443
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=7.8e-22 Score=134.01 Aligned_cols=152 Identities=16% Similarity=0.177 Sum_probs=90.0
Q ss_pred CCccEEEccCCcccccCCc-hhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCC-CcchhhhCCCcccE
Q 036127 2 SSISDIRLTNNRLSGELPK-NIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSG-AIPKEIGNLTMLKG 79 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~-~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~ 79 (155)
++|+.|++++|.++ .++. ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..|..+..+++|+.
T Consensus 101 ~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 101 EQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179 (306)
T ss_dssp TTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence 44555555555555 3332 223355666666666666554445555556666666666666543 24555666666666
Q ss_pred EEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCC-ccceecC
Q 036127 80 IYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLP-TVEVLDC 155 (155)
Q Consensus 80 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~-~L~~l~l 155 (155)
|++++|.+++..|..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.+++..|..+ ..++ +|++|++
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~~~L~~L~L 255 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL-QHFPSSLAFLNL 255 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC-CCCCTTCCEEEC
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH-HhhhccCCEEEc
Confidence 6666666665555666666666777776666666544556666677777777777665555544 5553 6666654
No 19
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.4e-21 Score=131.95 Aligned_cols=149 Identities=24% Similarity=0.291 Sum_probs=93.8
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCC---------------
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSG--------------- 65 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~--------------- 65 (155)
+++++.++++++.++ .+|..+. +.++.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 84 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred cCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence 467899999999999 8887765 789999999999987667778777777777777776652
Q ss_pred ------CcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCC
Q 036127 66 ------AIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSL 139 (155)
Q Consensus 66 ------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 139 (155)
..|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.++...+..+..+++|+.+++++|.++ .+
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 163 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-EL 163 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-cc
Confidence 22223334444555555555554333344455555555555555555544444455555555555555555 44
Q ss_pred CcccccCCCccceec
Q 036127 140 PSRIDLSLPTVEVLD 154 (155)
Q Consensus 140 ~~~~~~~~~~L~~l~ 154 (155)
|..++..+++|++|+
T Consensus 164 ~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 164 PAGLLNGLENLDTLL 178 (290)
T ss_dssp CTTTTTTCTTCCEEE
T ss_pred CHHHhcCcCCCCEEE
Confidence 444435555555554
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=6.9e-22 Score=134.28 Aligned_cols=151 Identities=23% Similarity=0.225 Sum_probs=112.5
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCC-ccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIP-SALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
++|+.|++++|.++ .++..+. .+++|++|++++|.+++..+ ..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus 78 ~~L~~L~Ls~n~i~-~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 78 TSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp SCCCEEECCSCSEE-EEEEEEE-TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred cccCEEECCCCccc-cChhhcC-CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 45666777777666 5665554 67778888888877774433 457777888888888887775666667778888888
Q ss_pred Eeecccccc-cCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 81 YLEYNKLHG-EIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 81 ~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
++++|.+++ ..|..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.++ .++...+..+++|++||+
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-BCCSGGGTTCTTCCEEEC
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-ccChhhccCcccCCEeEC
Confidence 888888765 46777788888888888888888876777888888888888888888 454433377888888875
No 21
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=2.5e-21 Score=124.91 Aligned_cols=133 Identities=26% Similarity=0.289 Sum_probs=83.8
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
+++.|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4666777777666 555555446667777777777666444444566667777777776666444444566667777777
Q ss_pred ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCccc
Q 036127 83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS 136 (155)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (155)
++|.+++..+..+..+++|+.+++.+|.+++..+..+..+++|+.+++++|.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 777666444444566667777777777666654445666666677766666554
No 22
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.87 E-value=2e-21 Score=126.42 Aligned_cols=134 Identities=22% Similarity=0.237 Sum_probs=121.7
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
++++.|++++|.++ .++...+..+++|+.|++++|.++...+..|..+++|+.|++++|.+....+..|..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 46899999999999 77776666899999999999999977788999999999999999999965566688999999999
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCccc
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS 136 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (155)
+++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|++.
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 9999999887889999999999999999999977778999999999999999885
No 23
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=6.3e-21 Score=123.01 Aligned_cols=146 Identities=22% Similarity=0.213 Sum_probs=125.3
Q ss_pred cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeec
Q 036127 5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY 84 (155)
Q Consensus 5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 84 (155)
+.++++++.++ .+|..+. +++++|++++|.++...+..+..+++|+.|++++|.+....+..|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 56788888888 7886654 6899999999999966666688999999999999999866566678999999999999
Q ss_pred ccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 85 NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.++ .++...+..+++|++|++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEe
Confidence 9998665666789999999999999999877777899999999999999999 666655588999999875
No 24
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.87 E-value=1.9e-21 Score=124.57 Aligned_cols=144 Identities=18% Similarity=0.240 Sum_probs=125.4
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
++++.|++++|.++ .++ .+. .+++|++|++++|.++ . +..+..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 57899999999999 777 555 7999999999999776 3 34788899999999999999866788899999999999
Q ss_pred eecccccccCchhhhCCCCCceEEeeCcc-ccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNI-LVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+++|.+++..+..+..+++|+.+++++|. ++. ++ .+..+++|+.+++++|.++ .++ .+ ..+++|++|++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~-~~~-~l-~~l~~L~~L~l 188 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVH-DYR-GI-EDFPKLNQLYA 188 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCC-CCT-TG-GGCSSCCEEEE
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCc-ChH-Hh-ccCCCCCEEEe
Confidence 99999987788889999999999999998 666 55 6889999999999999998 666 44 78999998874
No 25
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.87 E-value=3.5e-21 Score=125.31 Aligned_cols=136 Identities=22% Similarity=0.239 Sum_probs=122.0
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
.++.|++++|.+++..+...+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+....+..|..+++|+.|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 57899999999994435565668999999999999999777778999999999999999999777778999999999999
Q ss_pred ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCC
Q 036127 83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGS 138 (155)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 138 (155)
++|.+++..|..+..+++|+.+++++|.+++..|..+..+++|+.+++++|.+...
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 99999987788999999999999999999998888999999999999999998643
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=2.4e-21 Score=138.75 Aligned_cols=151 Identities=25% Similarity=0.265 Sum_probs=107.2
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
.+++.|++++|.++ .+++..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+....+..|..+++|+.|+
T Consensus 32 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 35777888888887 55444444778888888888887766677777788888888888877744445567777888888
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 154 (155)
+++|.+++..+..+..+++|+.+++.+|.++...+..+..+++|+.+++++|.++ .++...+..+++|+.|+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLR 182 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEe
Confidence 8877777666667777777777777777777766666777777777777777776 45543335566666554
No 27
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=8.5e-21 Score=127.09 Aligned_cols=139 Identities=27% Similarity=0.329 Sum_probs=122.0
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
+++|+.|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus 84 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp CTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 468999999999999 7777766589999999999999996666678899999999999999986666678899999999
Q ss_pred EeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCC
Q 036127 81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLP 140 (155)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 140 (155)
++++|.+++..+..+..+++|+.+++.+|.+++..+..+..+++|+.+++++|.+.+..|
T Consensus 163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 999999997666778899999999999999999777778999999999999998875544
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=1.4e-21 Score=139.07 Aligned_cols=128 Identities=26% Similarity=0.215 Sum_probs=92.7
Q ss_pred CCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEe
Q 036127 27 PYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVL 106 (155)
Q Consensus 27 ~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 106 (155)
++++.+++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.+++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 46777777777777666666777777777777777777555666777777777777777777666667777777777777
Q ss_pred eCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 107 GMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
++|.+++..|..+..+++|+++++++|.++ .+|...+..+++|++|++
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred CCCcccccChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEc
Confidence 777777766677777777777777777777 555544467777777764
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=3.6e-21 Score=133.17 Aligned_cols=151 Identities=21% Similarity=0.209 Sum_probs=116.9
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
++++.|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus 52 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 46888899888888 66665555788899999998888866667788888899999988888854445578888888999
Q ss_pred eecccccccCch--hhhCCCCCceEEeeCc-cccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 82 LEYNKLHGEIPH--EIANLLNLEDLVLGMN-ILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 82 l~~~~~~~~~~~--~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+++|.++. +|. .+..+++|+++++++| .+....+..+..+++|+.+++++|.+++..|..+ ..+++|++|++
T Consensus 131 L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l 205 (353)
T 2z80_A 131 LLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL-KSIQNVSHLIL 205 (353)
T ss_dssp CTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT-TTCSEEEEEEE
T ss_pred CCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH-hccccCCeecC
Confidence 88888873 444 6777888888888888 4666556678888888888888888875556655 77777777753
No 30
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=2e-20 Score=122.45 Aligned_cols=136 Identities=26% Similarity=0.310 Sum_probs=119.3
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
++++.|++++|.++ .+++..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+....+..|..+++|+.|+
T Consensus 40 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 47899999999999 55555555899999999999999855556688999999999999999866666788999999999
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCC
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSL 139 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 139 (155)
+++|.++ .+|..+..+++|+++++++|.++...+..+..+++|+.+++++|++....
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9999998 78888999999999999999999876678899999999999999987443
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1.2e-20 Score=134.05 Aligned_cols=151 Identities=26% Similarity=0.367 Sum_probs=101.6
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCC-------------------------CCcE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCK-------------------------QLQQ 55 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~-------------------------~L~~ 55 (155)
+++|+.|++++|.++ .++...+..+++|++|++++|.+....+..|..++ +|+.
T Consensus 111 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 111 LANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp CSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred CccCCEEECCCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence 356777888888777 66665555677777777777776644443444444 4555
Q ss_pred EEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcc
Q 036127 56 LNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL 135 (155)
Q Consensus 56 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (155)
|++++|.+. ..| .+..+++|+.|++++|.+++..|..+..+++|+.+++.+|.++...+..+..+++|+.+++++|.+
T Consensus 190 L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 190 LNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp EECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred ecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 555555444 222 245556666777777776655666777777777777777777776677777788888888888888
Q ss_pred cCCCCcccccCCCccceecC
Q 036127 136 SGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 136 ~~~~~~~~~~~~~~L~~l~l 155 (155)
+ .+|...+..+++|+.|++
T Consensus 268 ~-~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 268 T-LLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp C-CCCTTTTSSCTTCCEEEC
T ss_pred C-ccChhHhccccCCCEEEc
Confidence 7 566555577788877764
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=5.8e-21 Score=136.76 Aligned_cols=153 Identities=20% Similarity=0.167 Sum_probs=119.3
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
+++|+.|++++|.++ .+++..+..+++|++|++++|.++...+..|..+++|+.|++++|.+....+..+..+++|+.|
T Consensus 55 l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 55 FPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 467889999999888 4544444478899999999998885555567888899999999988876667778888889999
Q ss_pred EeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
++++|.+++..+..+..+++|+.+++.+|.+++..+..+..+++|+.+++++|.+. .++...+..+++|++|++
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC-EECTTCSCSCTTCCEEEE
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc-EeChhhcccCcccceeeC
Confidence 99888888777778888888888888888888765566788888888888888887 444433377777777653
No 33
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=2.2e-21 Score=132.27 Aligned_cols=153 Identities=19% Similarity=0.145 Sum_probs=90.8
Q ss_pred CCccEEEccCCcccccCCchhh-cCCCCccEEEccCccccccCCccccCC-----CCCcEEEcccCcCCCCcchhhhCCC
Q 036127 2 SSISDIRLTNNRLSGELPKNIG-SYLPYLKALFLDKNMFHGKIPSALSKC-----KQLQQLNLQFNNLSGAIPKEIGNLT 75 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~-~~l~~l~~l~l~~n~~~~~~~~~~~~~-----~~L~~l~l~~~~~~~~~~~~~~~~~ 75 (155)
++|+.|++++|.+++.+|..++ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+....+..++.++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 4677777777777766666552 3677777777777777744 5555554 6777777777777655556666677
Q ss_pred cccEEEeeccccccc--Cchhh--hCCCCCceEEeeCccccc---cCCccccCCCCCcEEEccCCcccCCCCcccccCCC
Q 036127 76 MLKGIYLEYNKLHGE--IPHEI--ANLLNLEDLVLGMNILVG---VFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLP 148 (155)
Q Consensus 76 ~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~l~l~~~~~~~---~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 148 (155)
+|+.|++++|.+.+. .+..+ ..+++|+++++++|.+++ .....+..+++|+.+++++|.+++..|...+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 777777777765433 22233 556666666666666652 11122344556666666666665434322224455
Q ss_pred ccceecC
Q 036127 149 TVEVLDC 155 (155)
Q Consensus 149 ~L~~l~l 155 (155)
+|++|++
T Consensus 254 ~L~~L~L 260 (312)
T 1wwl_A 254 QLNSLNL 260 (312)
T ss_dssp TCCEEEC
T ss_pred CCCEEEC
Confidence 5555543
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=4.1e-21 Score=140.97 Aligned_cols=152 Identities=14% Similarity=0.064 Sum_probs=92.8
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCC-CcchhhhCCCcccEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSG-AIPKEIGNLTMLKGI 80 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L 80 (155)
++|+.|++++|.+++..+...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..|..++.+++|+.|
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence 4455566666665533332333356666666666666655555556666666666666666553 245556666666666
Q ss_pred EeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCC-ccceecC
Q 036127 81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLP-TVEVLDC 155 (155)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~-~L~~l~l 155 (155)
++++|.+++..|..+..+++|+.+++++|.+++..|..+..+++|+.+++++|.++ .+|..+ ..++ +|+++++
T Consensus 479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~-~~l~~~L~~l~l 552 (606)
T 3vq2_A 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL-QHFPKSLAFFNL 552 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCG-GGSCTTCCEEEC
T ss_pred ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhH-hhhcccCcEEEc
Confidence 66666666555666666667777777777666655666666677777777777766 666554 5554 3666653
No 35
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=4.4e-21 Score=133.20 Aligned_cols=145 Identities=23% Similarity=0.224 Sum_probs=90.5
Q ss_pred CccEEEccCCcccccCCchhhc-CCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 3 SISDIRLTNNRLSGELPKNIGS-YLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~-~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
.++.|++++|.++ .++...+. .+++|+.|++++|.++...+..|..+++|+.|++++|.+....+..|..+++|+.|+
T Consensus 40 ~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 40 YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3566777777766 55555543 566777777777776655555566667777777777776644445566667777777
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccc---cCCCCCcEEEccCCcccCCCCcccccCCCc
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAI---FNMSTLKVLMLINNSLSGSLPSRIDLSLPT 149 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~ 149 (155)
+++|.++...+..+..+++|+.|++++|.++...+..+ ..+++|+.|++++|.++ .+|...+..++.
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~ 188 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPA 188 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCH
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccH
Confidence 77777665556666666777777777777666433334 44666777777777776 555433344444
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=4.7e-21 Score=140.64 Aligned_cols=151 Identities=21% Similarity=0.181 Sum_probs=113.8
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCC-ccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIP-SALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
++|+.|++++|.++ .+|..+. .+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+....|..+..+++|+.|
T Consensus 376 ~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 376 NSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp SCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred CcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 45666777777666 4554444 67777777777777775555 467777888888888888776667777788888888
Q ss_pred Eeecccccc-cCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 81 YLEYNKLHG-EIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 81 ~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
++++|.+++ ..|..+..+++|+.+++++|.+++..|..+..+++|+.+++++|.+++..|..+ +.+++|++||+
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~l 528 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY-NQLYSLSTLDC 528 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT-TTCTTCCEEEC
T ss_pred ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHc-cCCCcCCEEEC
Confidence 888888775 357777888888888888888888777778888888888888888885556666 77888888875
No 37
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=5.2e-21 Score=125.82 Aligned_cols=147 Identities=16% Similarity=0.246 Sum_probs=80.5
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCcc-ccccCCccccCCCCCcEEEccc-CcCCCCcchhhhCCCcccEE
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNM-FHGKIPSALSKCKQLQQLNLQF-NNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~-~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~L 80 (155)
+++.|++++|.++ .++...+..+++|++|++++|. ++...+..|..+++|+.|++++ |.+....+..|..+++|+.|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 4666666666666 5555444456666666666665 5544444566666666666665 66653334455566666666
Q ss_pred EeecccccccCchhhhCCCCCc---eEEeeCc-cccccCCccccCCCCCc-EEEccCCcccCCCCcccccCCCccceec
Q 036127 81 YLEYNKLHGEIPHEIANLLNLE---DLVLGMN-ILVGVFPAAIFNMSTLK-VLMLINNSLSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 154 (155)
++++|.+++ +|. +..+++|+ .+++++| .++...+..+..+++|+ .+++++|.++ .+|...+.. ++|+.|+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEE
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEE
Confidence 666665553 333 44444444 5555555 55544444455555555 5555555554 444433222 4444443
No 38
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=9.1e-21 Score=127.08 Aligned_cols=151 Identities=25% Similarity=0.266 Sum_probs=73.1
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
+|+.|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus 53 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 53 ELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (276)
T ss_dssp TCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence 4445555555544 333333334455555555555544333344444455555555555444333333445555555555
Q ss_pred eccccccc-CchhhhCCCCCceEEeeCccccccCCcccc---------------------------CCCCCcEEEccCCc
Q 036127 83 EYNKLHGE-IPHEIANLLNLEDLVLGMNILVGVFPAAIF---------------------------NMSTLKVLMLINNS 134 (155)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~---------------------------~~~~L~~l~l~~n~ 134 (155)
++|.+++. +|..+..+++|+++++++|.+++..+..+. ...+|+.+++++|.
T Consensus 132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ 211 (276)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC
T ss_pred cCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc
Confidence 55555432 345555555555555555554432222111 11245666666666
Q ss_pred ccCCCCcccccCCCccceecC
Q 036127 135 LSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 135 ~~~~~~~~~~~~~~~L~~l~l 155 (155)
++ .+|..++..+++|+.|++
T Consensus 212 l~-~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 212 LK-SVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp CS-CCCTTTTTTCCSCCEEEC
T ss_pred ee-ecCHhHhcccccccEEEc
Confidence 66 444444456666666653
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=2.1e-20 Score=133.14 Aligned_cols=151 Identities=25% Similarity=0.300 Sum_probs=105.5
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccC-------------------------CCCCcE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSK-------------------------CKQLQQ 55 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~-------------------------~~~L~~ 55 (155)
+++|+.|++++|.++ .++...+..+++|++|++++|.++...+..+.. +++|+.
T Consensus 122 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 122 LASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200 (452)
T ss_dssp CTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE
T ss_pred cccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE
Confidence 356788888888887 666666656778888888887776443334444 445555
Q ss_pred EEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcc
Q 036127 56 LNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL 135 (155)
Q Consensus 56 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (155)
|++++|.+. ..| .+..+++|+.|++++|.+++..|..+..+++|+.+++.+|.+++..+..+..+++|+.+++++|.+
T Consensus 201 L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 201 LNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp EECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 555555554 222 355566777777777777766677777788888888888888777777788888888888888888
Q ss_pred cCCCCcccccCCCccceecC
Q 036127 136 SGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 136 ~~~~~~~~~~~~~~L~~l~l 155 (155)
+ .+|...+..+++|+.|++
T Consensus 279 ~-~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 279 S-SLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp S-CCCTTSSTTCTTCCEEEC
T ss_pred C-ccChHHhccccCCCEEEc
Confidence 8 666555577888887764
No 40
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=1.9e-20 Score=125.52 Aligned_cols=139 Identities=24% Similarity=0.282 Sum_probs=105.2
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCC-cchhhhCCCcccE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGA-IPKEIGNLTMLKG 79 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~ 79 (155)
+++|+.|++++|.++ .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+... .|..+..+++|+.
T Consensus 75 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~ 153 (276)
T 2z62_A 75 LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (276)
T ss_dssp CTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CcCCCEEECCCCccC-ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCE
Confidence 357888999998888 55555444788888888888888855555677888888888888888743 4777888888888
Q ss_pred EEeecccccccCchhhh---------------------------CCCCCceEEeeCccccccCCccccCCCCCcEEEccC
Q 036127 80 IYLEYNKLHGEIPHEIA---------------------------NLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLIN 132 (155)
Q Consensus 80 L~l~~~~~~~~~~~~~~---------------------------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 132 (155)
|++++|.+++..+..+. ...+|+.+++++|.+++..+..+..+++|+.+++++
T Consensus 154 L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp EECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred EECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 88888877654333322 122677888888888886666778899999999999
Q ss_pred CcccCCCC
Q 036127 133 NSLSGSLP 140 (155)
Q Consensus 133 n~~~~~~~ 140 (155)
|++....+
T Consensus 234 N~~~c~c~ 241 (276)
T 2z62_A 234 NPWDCSCP 241 (276)
T ss_dssp SCBCCCTT
T ss_pred CcccccCC
Confidence 99985544
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=133.34 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=104.6
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
+++|+.|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+....+..|..+++|+.|
T Consensus 87 l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 87 LRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp CSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence 468999999999999 7776666689999999999999996666679999999999999998874444455556666666
Q ss_pred Eeeccc-ccccCchhhh----------------------CCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccC
Q 036127 81 YLEYNK-LHGEIPHEIA----------------------NLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSG 137 (155)
Q Consensus 81 ~l~~~~-~~~~~~~~~~----------------------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (155)
++++|. +....+..+. .+++|+.|++++|.+++..+..+..+++|+.+++++|.++
T Consensus 166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~- 244 (440)
T 3zyj_A 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ- 244 (440)
T ss_dssp ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-
T ss_pred CCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee-
Confidence 665532 2211222333 4455555555666665555566666666666666666666
Q ss_pred CCCcccccCCCccceecC
Q 036127 138 SLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 138 ~~~~~~~~~~~~L~~l~l 155 (155)
.++...+..+++|+.||+
T Consensus 245 ~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 245 VIERNAFDNLQSLVEINL 262 (440)
T ss_dssp EECTTSSTTCTTCCEEEC
T ss_pred EEChhhhcCCCCCCEEEC
Confidence 333333366677776664
No 42
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=1.8e-20 Score=130.14 Aligned_cols=146 Identities=25% Similarity=0.263 Sum_probs=127.7
Q ss_pred cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCcccc-CCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127 5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALS-KCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83 (155)
Q Consensus 5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 83 (155)
+.++++++.++ .+|..+. +.++.|++++|.++...+..+. .+++|+.|++++|.+....+..|..+++|+.|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 57899999999 8887655 5689999999999976666677 89999999999999986666789999999999999
Q ss_pred cccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccc---cCCCccceecC
Q 036127 84 YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRID---LSLPTVEVLDC 155 (155)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~---~~~~~L~~l~l 155 (155)
+|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.++ .+|..++ ..+++|++||+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEEC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEEC
Confidence 99998666777899999999999999999988889999999999999999999 7887765 46899999875
No 43
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=6.7e-21 Score=125.30 Aligned_cols=150 Identities=18% Similarity=0.125 Sum_probs=109.0
Q ss_pred CCCccEEEccCCc-ccccCCchhhcCCCCccEEEccC-ccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCccc
Q 036127 1 MSSISDIRLTNNR-LSGELPKNIGSYLPYLKALFLDK-NMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLK 78 (155)
Q Consensus 1 ~~~l~~l~l~~~~-~~~~~~~~~~~~l~~l~~l~l~~-n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 78 (155)
+++|+.|++++|. ++ .++...+..+++|++|++++ |.++...+..|..+++|+.|++++|.+.. .|. +..+++|+
T Consensus 54 l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~ 130 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD 130 (239)
T ss_dssp CTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC
T ss_pred CCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccc
Confidence 4678889999886 77 77776666788999999988 88886556678888889999888888773 554 66777777
Q ss_pred ---EEEeecc-cccccCchhhhCCCCCc-eEEeeCccccccCCccccCCCCCcEEEccCCc-ccCCCCcccccCC-Cccc
Q 036127 79 ---GIYLEYN-KLHGEIPHEIANLLNLE-DLVLGMNILVGVFPAAIFNMSTLKVLMLINNS-LSGSLPSRIDLSL-PTVE 151 (155)
Q Consensus 79 ---~L~l~~~-~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~-~~L~ 151 (155)
.+++++| .+++..+..+..+++|+ .+++++|.++...+..+.. ++|+.+++++|. ++ .+|...+..+ ++|+
T Consensus 131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLT-VIDKDAFGGVYSGPS 208 (239)
T ss_dssp SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCC-EECTTTTTTCSBCCS
T ss_pred cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcc-cCCHHHhhccccCCc
Confidence 8888888 77755555677777888 8888888777543334444 677777777774 76 5554444666 7777
Q ss_pred eecC
Q 036127 152 VLDC 155 (155)
Q Consensus 152 ~l~l 155 (155)
.||+
T Consensus 209 ~L~l 212 (239)
T 2xwt_C 209 LLDV 212 (239)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7664
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=4.2e-21 Score=141.07 Aligned_cols=137 Identities=20% Similarity=0.195 Sum_probs=96.1
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
+++.|++++|.++ .+++..+..+++|++|++++|.++...+.+|..+++|++|++++|.+....+..|..+++|++|++
T Consensus 53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 5677777777777 666665557777777777777777555566777777777777777776444556777777777777
Q ss_pred ecccccccCchhhhCCCCCceEEeeCcccccc-CCccccCCCCCcEEEccCCcccCCCC
Q 036127 83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGV-FPAAIFNMSTLKVLMLINNSLSGSLP 140 (155)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~ 140 (155)
++|.+++..+..++.+++|++|++.+|.++.. .|..+..+++|+++++++|.+++..+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 77777754455567777777777777777653 45566677777777777777763333
No 45
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=2.4e-20 Score=132.72 Aligned_cols=88 Identities=23% Similarity=0.233 Sum_probs=59.8
Q ss_pred cchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccC
Q 036127 67 IPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLS 146 (155)
Q Consensus 67 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 146 (155)
.+..++.+++|+.|++++|.+++..|..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.+++..|..+ ..
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~ 369 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF-LG 369 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT-TT
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc-cc
Confidence 34445566667777777777765556666677777777777777766666667777777777777777774445555 66
Q ss_pred CCccceecC
Q 036127 147 LPTVEVLDC 155 (155)
Q Consensus 147 ~~~L~~l~l 155 (155)
+++|++|++
T Consensus 370 l~~L~~L~L 378 (455)
T 3v47_A 370 LPNLKELAL 378 (455)
T ss_dssp CTTCCEEEC
T ss_pred cccccEEEC
Confidence 777777764
No 46
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=2.9e-20 Score=130.11 Aligned_cols=148 Identities=19% Similarity=0.204 Sum_probs=124.8
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
.+++.++++++.++ .+|..++..+++|++|++++|.++...+..+..+++|+.|++++|.+....+..++.+++|+.|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 57889999999998 88888776899999999999999866667899999999999999999877777889999999999
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 154 (155)
+++|.++...+..+..+++|+++++++|.+.+..+..+..+++|+.+++++|.++ .++. ..+++|+.++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~---~~l~~L~~L~ 192 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHAN 192 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCCG---GGCTTCSEEE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-cccc---ccccccceee
Confidence 9999998443444688999999999999999877778999999999999999998 4442 4455555544
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=2.4e-20 Score=132.85 Aligned_cols=151 Identities=19% Similarity=0.230 Sum_probs=105.7
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
+++|+.|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+....+..|..+++|+.|
T Consensus 98 l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence 468999999999999 6666666589999999999999996666678899999999999999874444445555555555
Q ss_pred Eeec-------------------------ccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcc
Q 036127 81 YLEY-------------------------NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL 135 (155)
Q Consensus 81 ~l~~-------------------------~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (155)
++++ |.+++ .| .+..+++|+.|++++|.+++..|..+..+++|+.+++++|.+
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence 5554 44431 22 234455666666666666665566667777777777777777
Q ss_pred cCCCCcccccCCCccceecC
Q 036127 136 SGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 136 ~~~~~~~~~~~~~~L~~l~l 155 (155)
++..+..+ ..+++|+.||+
T Consensus 255 ~~~~~~~~-~~l~~L~~L~L 273 (452)
T 3zyi_A 255 SLIERNAF-DGLASLVELNL 273 (452)
T ss_dssp CEECTTTT-TTCTTCCEEEC
T ss_pred ceECHHHh-cCCCCCCEEEC
Confidence 63333333 66777777764
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=2.2e-20 Score=137.32 Aligned_cols=145 Identities=21% Similarity=0.179 Sum_probs=125.6
Q ss_pred EEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecc
Q 036127 6 DIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYN 85 (155)
Q Consensus 6 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 85 (155)
.+++++.+++ .+|..+. +++++|++++|.++...+.+|..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 35 ~~~c~~~~l~-~vP~~lp---~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCS-SCCSSSC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcC-ccCCCCC---cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 4677777888 8887654 58999999999999776778999999999999999998666778999999999999999
Q ss_pred cccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccC-CCCcccccCCCccceecC
Q 036127 86 KLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSG-SLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 86 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~~L~~l~l 155 (155)
++++..+..+..+++|++|++.+|++++..+..+.++++|++|++++|.++. ..|..+ +.+++|++|++
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L 180 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDL 180 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEEC
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhh-ccchhhhhhcc
Confidence 9986666778999999999999999999777789999999999999999974 345555 88999999875
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=1.1e-20 Score=137.31 Aligned_cols=151 Identities=20% Similarity=0.203 Sum_probs=121.8
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
++++.|++++|.++ .+++..+..+++|++|++++|.+++..+.+|..+++|++|++++|.+....+..++.+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 46889999999998 55444444899999999999999877777888999999999999998866666788999999999
Q ss_pred eecccccc-cCchhhhCCCCCceEEeeCcc-ccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127 82 LEYNKLHG-EIPHEIANLLNLEDLVLGMNI-LVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 82 l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 154 (155)
+++|.+++ ..|..+..+++|+++++.+|. +....+..+..+++|+.+++++|.+++..|..+ +.+++|++|+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~ 178 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL-KSIRDIHHLT 178 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT-TTCSEEEEEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh-hccccCceEe
Confidence 99998875 346678888999999999987 444444678888999999999999886677766 6677666664
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=3.7e-21 Score=133.10 Aligned_cols=153 Identities=20% Similarity=0.132 Sum_probs=124.1
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcc-hhhhCCCcccE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP-KEIGNLTMLKG 79 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~ 79 (155)
+++|+.|++++|.++ .+++..+..+++|++|++++|.++...+..+..+++|+.|++++|.+....+ ..+..+++|+.
T Consensus 75 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 75 CVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153 (353)
T ss_dssp CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred CCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcE
Confidence 467999999999998 5655544488999999999999985444458889999999999999884333 36888999999
Q ss_pred EEeecc-cccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 80 IYLEYN-KLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 80 L~l~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
|++++| .++...+..+..+++|+.+++++|.+++..|..+..+++|+++++++|.++ .+|..++..+++|+.|++
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L 229 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLEL 229 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEE
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEEC
Confidence 999998 466555677888999999999999998877888888999999999999887 777666566788887764
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=7.5e-20 Score=125.47 Aligned_cols=147 Identities=22% Similarity=0.295 Sum_probs=83.9
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccc--cCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHG--KIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
+|+.|++++|.++ .++...+..+++++.+++++|.+.. ..+..+..+++|+.+++++|.+. ..|..+. ++|+.|
T Consensus 122 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L 197 (330)
T 1xku_A 122 TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTEL 197 (330)
T ss_dssp TCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEE
T ss_pred cccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEE
Confidence 3444455555444 3444433356666666666665542 33445555666666666665554 2232221 455666
Q ss_pred EeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.++ .+|..+ ..+++|++|++
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l-~~l~~L~~L~l 270 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL-ADHKYIQVVYL 270 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT-TTCSSCCEEEC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh-ccCCCcCEEEC
Confidence 66666665555566666666666777666666655555666666666666666666 666655 56666666654
No 52
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=5.1e-21 Score=141.40 Aligned_cols=133 Identities=21% Similarity=0.336 Sum_probs=77.0
Q ss_pred CCchhhcCCCCccEEEccCcccccc-----------------CCcccc--CCCCCcEEEcccCcCCCCcchhhhCCCccc
Q 036127 18 LPKNIGSYLPYLKALFLDKNMFHGK-----------------IPSALS--KCKQLQQLNLQFNNLSGAIPKEIGNLTMLK 78 (155)
Q Consensus 18 ~~~~~~~~l~~l~~l~l~~n~~~~~-----------------~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 78 (155)
+|..+. .+++|++|++++|.+++. .|..+. .+++|+.|++++|.+....|..++.+++|+
T Consensus 198 ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHh-cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 455444 566666666666666642 555555 666666666666665555566666666666
Q ss_pred EEEeeccc-ccc-cCchhhhCC------CCCceEEeeCccccccCCc--cccCCCCCcEEEccCCcccCCCCcccccCCC
Q 036127 79 GIYLEYNK-LHG-EIPHEIANL------LNLEDLVLGMNILVGVFPA--AIFNMSTLKVLMLINNSLSGSLPSRIDLSLP 148 (155)
Q Consensus 79 ~L~l~~~~-~~~-~~~~~~~~~------~~L~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 148 (155)
.|++++|. +++ .+|..++.+ ++|+++++++|.++ .+|. .+..+++|+.+++++|.++|.+| .+ +.++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~-~~l~ 353 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF-GSEI 353 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC-EEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hh-CCCC
Confidence 66666665 554 455555444 56666666666655 3454 55556666666666666655555 33 4555
Q ss_pred ccceec
Q 036127 149 TVEVLD 154 (155)
Q Consensus 149 ~L~~l~ 154 (155)
+|++|+
T Consensus 354 ~L~~L~ 359 (636)
T 4eco_A 354 KLASLN 359 (636)
T ss_dssp EESEEE
T ss_pred CCCEEE
Confidence 555554
No 53
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=9.4e-20 Score=127.56 Aligned_cols=110 Identities=19% Similarity=0.207 Sum_probs=62.0
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
++|+.|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..|..+++|+.|+
T Consensus 69 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 45666666666666 44443333566666666666666644455555666666666666665533233345556666666
Q ss_pred eecccccccCchhhhCCCCCceEEeeCcccc
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILV 112 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 112 (155)
+++|.+++..+..+..+++|+.+++.+|.++
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 6666655444444555555555555555443
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=8e-20 Score=134.19 Aligned_cols=85 Identities=21% Similarity=0.221 Sum_probs=32.9
Q ss_pred CCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceE
Q 036127 25 YLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDL 104 (155)
Q Consensus 25 ~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 104 (155)
.+++|+.|++++|.+++..+..|..+++|+.|++++|.+....+..|+.+++|+.|++++|.+++..|..+..+++|+.|
T Consensus 97 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 97 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence 34444444444444443333333344444444444444432222223334444444444444433333333333333333
Q ss_pred EeeCc
Q 036127 105 VLGMN 109 (155)
Q Consensus 105 ~l~~~ 109 (155)
++.+|
T Consensus 177 ~L~~N 181 (597)
T 3oja_B 177 QLSSN 181 (597)
T ss_dssp ECTTS
T ss_pred ECcCC
Confidence 33333
No 55
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.84 E-value=6.5e-20 Score=116.97 Aligned_cols=132 Identities=22% Similarity=0.299 Sum_probs=117.5
Q ss_pred cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCc-cccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127 5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPS-ALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83 (155)
Q Consensus 5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 83 (155)
+.++++++.++ .+|..+. .+++.|++++|.+++..+. .+..+++|+.|++++|.+....|..|..+++|+.|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 67899999998 8998765 4899999999999855544 48899999999999999997778899999999999999
Q ss_pred cccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCC
Q 036127 84 YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLP 140 (155)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 140 (155)
+|.+++..+..+..+++|+++++++|.+++..|..+..+++|+++++++|.+.+..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999997777788899999999999999999888899999999999999999875544
No 56
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=2.8e-20 Score=136.53 Aligned_cols=150 Identities=21% Similarity=0.187 Sum_probs=78.0
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCc-cccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPS-ALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
++|+.|++++|.++ .+++..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus 376 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 454 (606)
T 3t6q_A 376 SHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454 (606)
T ss_dssp TTCCEEECCSCSCE-EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCC-cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence 45666666666665 33323332556666666666665543332 25555566666666665554445555555555555
Q ss_pred Eeeccccccc---CchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127 81 YLEYNKLHGE---IPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 81 ~l~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 154 (155)
++++|.+++. .+..+..+++|+.+++++|.+++..|..+..+++|+.+++++|.+++..|..+ ..++.| +|+
T Consensus 455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L-~L~ 529 (606)
T 3t6q_A 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL-SHLKGI-YLN 529 (606)
T ss_dssp ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG-TTCCSC-EEE
T ss_pred ECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHh-Cccccc-EEE
Confidence 5555555431 12334455555555555555555445555555555555555555553333333 444444 443
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=135.72 Aligned_cols=151 Identities=22% Similarity=0.225 Sum_probs=113.1
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCC-ccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIP-SALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
++|+.|++++|.++ .++..+. .+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus 373 ~~L~~L~l~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 373 TSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450 (570)
T ss_dssp SCCCEEECCSCSEE-EEEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred CccCEEECCCCccc-ccccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence 45666777777666 4454433 67777777777777765444 356777888888888888776667777888888888
Q ss_pred Eeeccccc-ccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 81 YLEYNKLH-GEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 81 ~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
++++|.++ +..|..+..+++|+.+++++|.+++..|..+..+++|+.+++++|.++ .+|...+..+++|+.|++
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC-CCCHHHhhcccCCcEEEe
Confidence 88888876 457777888888888888888888877778888888889999888888 444433378888888775
No 58
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=6.9e-20 Score=134.50 Aligned_cols=148 Identities=19% Similarity=0.204 Sum_probs=128.3
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
.+++.++++++.++ .+|..++..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..|+.+++|+.|+
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56789999999998 88988876899999999999999977777899999999999999999977777889999999999
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 154 (155)
+++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.++ .++. ..+++|+.|+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~---~~l~~L~~L~ 198 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHAN 198 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCCG---GGCTTCSEEE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcCh---hhhhhhhhhh
Confidence 9999998554555789999999999999999988888999999999999999998 5542 4455555554
No 59
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=8.9e-20 Score=133.90 Aligned_cols=133 Identities=26% Similarity=0.285 Sum_probs=64.4
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcc-hhhhCCCcccEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIP-KEIGNLTMLKGI 80 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L 80 (155)
++|+.|++++|.++ .+|..+. .+++|++|++++|.+.+..+..+..+++|+.+++++|.+....+ ..+..+++|+.|
T Consensus 278 ~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 278 SGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred cCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 34555666666555 5555444 45566666666655554434444455555555555554432222 224444455555
Q ss_pred EeecccccccC--chhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCccc
Q 036127 81 YLEYNKLHGEI--PHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS 136 (155)
Q Consensus 81 ~l~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (155)
++++|.+++.. +..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.++
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 55544444322 334444445555555555444444444444444444444444444
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=7.3e-20 Score=135.95 Aligned_cols=153 Identities=25% Similarity=0.239 Sum_probs=110.5
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
++++.|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..|+.+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 35778888888887 56655554778888888888888766677777888888888888877744444677788888888
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccc-cCCCccceecC
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRID-LSLPTVEVLDC 155 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~-~~~~~L~~l~l 155 (155)
+++|.+++..+..+..+++|+++++.+|.+++..+..+..+++|+++++++|.+++..+..+. ..+++|++|++
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence 888887755566777788888888888887776666777778888888888877733333221 24566666654
No 61
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.83 E-value=9.2e-20 Score=113.86 Aligned_cols=136 Identities=20% Similarity=0.154 Sum_probs=90.9
Q ss_pred CCccEEEccCCccc-ccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 2 SSISDIRLTNNRLS-GELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 2 ~~l~~l~l~~~~~~-~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
++++.|++++|.++ +.+|..+. .+++|+.|++++|.++.. ..+..+++|+.|++++|.+....|..+..+++|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 45677777777776 45655543 667777777777777633 556667777777777777765456666667777777
Q ss_pred EeecccccccC-chhhhCCCCCceEEeeCccccccCC---ccccCCCCCcEEEccCCcccCCCCc
Q 036127 81 YLEYNKLHGEI-PHEIANLLNLEDLVLGMNILVGVFP---AAIFNMSTLKVLMLINNSLSGSLPS 141 (155)
Q Consensus 81 ~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~~~~~ 141 (155)
++++|.+++.. +..+..+++|+.+++++|.+++..+ ..+..+++|+++++++|.+. .+|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 77777776321 2566677777777777777766433 35667777777777777766 5554
No 62
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.83 E-value=1.9e-19 Score=114.91 Aligned_cols=127 Identities=31% Similarity=0.386 Sum_probs=114.3
Q ss_pred cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeec
Q 036127 5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY 84 (155)
Q Consensus 5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 84 (155)
+.++++++.++ .+|..+. ++++.|++++|.++ .+|..+..+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 56899999999 8887654 68999999999998 6778899999999999999999977777899999999999999
Q ss_pred ccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCccc
Q 036127 85 NKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS 136 (155)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (155)
|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.+++++|++.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9999777778999999999999999999876677899999999999999885
No 63
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=8.9e-21 Score=140.11 Aligned_cols=150 Identities=23% Similarity=0.333 Sum_probs=99.2
Q ss_pred CCCccEEEccCCccccc-----------------CCchhh-cCCCCccEEEccCccccccCCccccCCCCCcEEEcccCc
Q 036127 1 MSSISDIRLTNNRLSGE-----------------LPKNIG-SYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNN 62 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~-----------------~~~~~~-~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~ 62 (155)
+++|+.|++++|.+++. +|..+. ..+++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 35677778887777743 666543 247777788887777777777777777777777777776
Q ss_pred -CCC-CcchhhhCC------CcccEEEeecccccccCch--hhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccC
Q 036127 63 -LSG-AIPKEIGNL------TMLKGIYLEYNKLHGEIPH--EIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLIN 132 (155)
Q Consensus 63 -~~~-~~~~~~~~~------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 132 (155)
+.. ..|..++.+ ++|+.|++++|.++ .+|. .+..+++|+.+++.+|.+++.+| .+..+++|+.+++++
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 654 456655554 67777777777776 6666 67777777777777777764455 555555566666666
Q ss_pred CcccCCCCcccccCCCc-cceec
Q 036127 133 NSLSGSLPSRIDLSLPT-VEVLD 154 (155)
Q Consensus 133 n~~~~~~~~~~~~~~~~-L~~l~ 154 (155)
|.++ .+|..+ ..+++ |++|+
T Consensus 363 N~l~-~lp~~l-~~l~~~L~~L~ 383 (636)
T 4eco_A 363 NQIT-EIPANF-CGFTEQVENLS 383 (636)
T ss_dssp SEEE-ECCTTS-EEECTTCCEEE
T ss_pred Cccc-cccHhh-hhhcccCcEEE
Confidence 6555 555544 44555 55554
No 64
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=1e-19 Score=131.51 Aligned_cols=149 Identities=25% Similarity=0.291 Sum_probs=106.1
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccc--cCCccccCCCCCcEEEcccCcCCCCcch-hhhCCCccc
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHG--KIPSALSKCKQLQQLNLQFNNLSGAIPK-EIGNLTMLK 78 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~~L~ 78 (155)
++|+.|++++|.+++.+|..+. .+++|+.|++++|.+++ ..|..+..+++|+.|++++|.+....|. .+..+++|+
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 4677777777777754555554 67777777777777764 3345566777777777777777653443 366677777
Q ss_pred EEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 79 GIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 79 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
.|++++|.+++..|..+. ++|+.+++++|.++. +|..+..+++|+.+++++|.++ .+|...+..+++|++|++
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEEC
Confidence 777777777655555442 678888888888875 6666668888999999999888 777764478888888875
No 65
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=1.1e-19 Score=124.86 Aligned_cols=75 Identities=25% Similarity=0.281 Sum_probs=39.9
Q ss_pred EEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 79 GIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 79 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
.|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.++ .+|..+ ..+++|++|++
T Consensus 197 ~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l-~~l~~L~~L~l 271 (332)
T 2ft3_A 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYL 271 (332)
T ss_dssp CCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG-GGCTTCCEEEC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh-hcCccCCEEEC
Confidence 3333333333333344445555556666666555544445555666666666666665 555554 55666665553
No 66
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=3.1e-19 Score=132.58 Aligned_cols=153 Identities=21% Similarity=0.194 Sum_probs=80.2
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCcccccc--------------------------CCccccCCCCCcE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGK--------------------------IPSALSKCKQLQQ 55 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~--------------------------~~~~~~~~~~L~~ 55 (155)
++|+.|++++|.+++.++...+..+++++++++++|.+... .|..+..+++|+.
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 34555555555555444433333555555555555554332 2333444455555
Q ss_pred EEcccCcCCCCcchhhhCCCcccEEEeecccccccCc--------hhhhCCCCCceEEeeCccccccCCccccCCCCCcE
Q 036127 56 LNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIP--------HEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKV 127 (155)
Q Consensus 56 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 127 (155)
|++++|.+....+..+..+++|+.|++++|.+++..+ ..+..+++|+.+++++|.++...+..+..+++|+.
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 5555555543333445555555555555555542211 11344555666666666555433345666666666
Q ss_pred EEccCCcccCCCCcccccCCCccceecC
Q 036127 128 LMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 128 l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+++++|.++ .+|...+..+++|+.|++
T Consensus 565 L~Ls~N~l~-~l~~~~~~~l~~L~~L~L 591 (680)
T 1ziw_A 565 IDLGLNNLN-TLPASVFNNQVSLKSLNL 591 (680)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred eECCCCCCC-cCCHhHhCCCCCCCEEEC
Confidence 666666666 555554466666666654
No 67
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=4.6e-19 Score=119.75 Aligned_cols=140 Identities=29% Similarity=0.487 Sum_probs=93.9
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
++|+.|++++|.++ .++. +. .+++|+.|++++|.++. . ..+..+++|+.|++++|.+.. . ..+..+++|+.|+
T Consensus 68 ~~L~~L~L~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 68 PNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLY 140 (291)
T ss_dssp TTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEE
T ss_pred CCCCEEEccCCccC-CCcc-cc-cCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEE
Confidence 55667777777776 4444 33 66777777777777663 2 236667777777777777663 2 3466677777777
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+++|.+++. ..+..+++|+.+++++|.+++..+ +..+++|+.+++++|.++ .++. + ..+++|+.|++
T Consensus 141 l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~-~l~~-l-~~l~~L~~L~l 207 (291)
T 1h6t_A 141 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRA-L-AGLKNLDVLEL 207 (291)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCGG-G-TTCTTCSEEEE
T ss_pred ccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC-CChh-h-ccCCCCCEEEC
Confidence 777777643 556677777777777777776433 677777888888888777 5554 3 67777777763
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=6.5e-20 Score=133.63 Aligned_cols=146 Identities=20% Similarity=0.191 Sum_probs=100.6
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
+++.|++++|.++ .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.+....+..|+.+++|++|++
T Consensus 29 ~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred cccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 5677788888777 555544447778888888888777555666777778888888887776555567777777888888
Q ss_pred ecccccccCchhhhCCCCCceEEeeCccccc-cCCccccCCCCCcEEEccCCcccCCCCcccccCCCcc
Q 036127 83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVG-VFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTV 150 (155)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L 150 (155)
++|.+++..+..++.+++|+++++++|.+++ .+|..+..+++|+++++++|.+++..+..+ +.+++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L 175 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQM 175 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG-HHHHTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc-cchhcc
Confidence 7777764434456777777788777777765 246677777777777777777763333333 444444
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=9.4e-20 Score=124.20 Aligned_cols=147 Identities=20% Similarity=0.144 Sum_probs=78.2
Q ss_pred CCccEEEccCCcccccCCchhhcCC-----CCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCC--cchhh--h
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYL-----PYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGA--IPKEI--G 72 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l-----~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~--~ 72 (155)
++|+.|++++|.++ .+|..+. .+ ++|++|++++|.+.+..+..+..+++|+.|++++|.+... .+..+ .
T Consensus 121 ~~L~~L~Ls~N~l~-~~~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 121 PDLNILNLRNVSWA-TRDAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CCCSEEEEESCBCS-SSSSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCccEEEccCCCCc-chhHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 45666777777666 3344333 33 6666666666666655555666666666666666664321 12222 4
Q ss_pred CCCcccEEEeecccccc--cCc-hhhhCCCCCceEEeeCccccccCC-ccccCCCCCcEEEccCCcccCCCCcccccCCC
Q 036127 73 NLTMLKGIYLEYNKLHG--EIP-HEIANLLNLEDLVLGMNILVGVFP-AAIFNMSTLKVLMLINNSLSGSLPSRIDLSLP 148 (155)
Q Consensus 73 ~~~~L~~L~l~~~~~~~--~~~-~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 148 (155)
.+++|+.|++++|.+++ ..+ ..+..+++|+.+++++|.+++..| ..+..+++|+++++++|.++ .+|..+ . +
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~-~--~ 274 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL-P--A 274 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC-C--S
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc-c--C
Confidence 55666666666665552 111 122344556666666665555432 23334455555555555555 555444 1 4
Q ss_pred ccceec
Q 036127 149 TVEVLD 154 (155)
Q Consensus 149 ~L~~l~ 154 (155)
+|++||
T Consensus 275 ~L~~L~ 280 (312)
T 1wwl_A 275 KLSVLD 280 (312)
T ss_dssp EEEEEE
T ss_pred CceEEE
Confidence 444444
No 70
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=5.4e-20 Score=139.44 Aligned_cols=150 Identities=22% Similarity=0.253 Sum_probs=116.7
Q ss_pred CCCccEEEccCCcccc-----------------cCCchh-hcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCc
Q 036127 1 MSSISDIRLTNNRLSG-----------------ELPKNI-GSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNN 62 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~-----------------~~~~~~-~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~ 62 (155)
+++|+.|++++|.+++ .+|..+ +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 4678888999888885 277765 3468889999998888877888888888888899888887
Q ss_pred -CCC-CcchhhhCCC-------cccEEEeecccccccCch--hhhCCCCCceEEeeCccccccCCccccCCCCCcEEEcc
Q 036127 63 -LSG-AIPKEIGNLT-------MLKGIYLEYNKLHGEIPH--EIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLI 131 (155)
Q Consensus 63 -~~~-~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 131 (155)
+.. ..|..++.++ +|+.|++++|.++ .+|. .+..+++|+.|++++|.++ .+| .+..+++|+.|+++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECC
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECc
Confidence 664 4566555544 8888888888888 7777 7888888888888888887 466 77778888888888
Q ss_pred CCcccCCCCcccccCCCc-cceecC
Q 036127 132 NNSLSGSLPSRIDLSLPT-VEVLDC 155 (155)
Q Consensus 132 ~n~~~~~~~~~~~~~~~~-L~~l~l 155 (155)
+|.++ .+|..+ ..+++ |+.|++
T Consensus 604 ~N~l~-~lp~~l-~~l~~~L~~L~L 626 (876)
T 4ecn_A 604 YNQIE-EIPEDF-CAFTDQVEGLGF 626 (876)
T ss_dssp SSCCS-CCCTTS-CEECTTCCEEEC
T ss_pred CCccc-cchHHH-hhccccCCEEEC
Confidence 88887 777766 66777 777764
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=5.2e-20 Score=133.71 Aligned_cols=152 Identities=20% Similarity=0.167 Sum_probs=113.2
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCC-cchhhhCCCcccE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGA-IPKEIGNLTMLKG 79 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~ 79 (155)
+++|+.|++++|.++ .+++..+..+++|++|++++|.+++..+..+..+++|++|++++|.+... .+..++.+++|+.
T Consensus 49 l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 49 CANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred CCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 467899999999999 55555444899999999999999866666688999999999999988742 4567888999999
Q ss_pred EEeecccccccCc-hhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127 80 IYLEYNKLHGEIP-HEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 80 L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 154 (155)
|++++|...+..| ..+..+++|+++++.+|.+++..|..+..+++|+.+++++|.+. .+|..++..+++|++|+
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~ 202 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLE 202 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEE
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEE
Confidence 9999987433444 57888899999999999888877777766666666666555554 44443333445555443
No 72
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=8.3e-19 Score=120.27 Aligned_cols=131 Identities=21% Similarity=0.274 Sum_probs=77.3
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
++++.|++++|.++ .++...+..+++|++|++++|.+++..|..+..+++|+.|++++|.+. ..|..+. ++|+.|+
T Consensus 52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence 35677777777777 555544446778888888888777555677777777777777777766 3333222 4555566
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccc--cCCccccCCCCCcEEEccCCccc
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVG--VFPAAIFNMSTLKVLMLINNSLS 136 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~l~l~~n~~~ 136 (155)
+++|.+++..+..+..+++|+.+++.+|.+.. ..+..+..+++|+.+++++|.++
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 65555554444445555555555555555532 23334444444444444444433
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=1.3e-18 Score=118.45 Aligned_cols=124 Identities=23% Similarity=0.409 Sum_probs=55.1
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
++|+.|++++|.++ .++. +. .+++|++|++++|.+++ . ..+..+++|+.|++++|.+.. .+. +..+++|+.|+
T Consensus 63 ~~L~~L~L~~n~i~-~~~~-~~-~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~ 135 (308)
T 1h6u_A 63 NNLIGLELKDNQIT-DLAP-LK-NLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLY 135 (308)
T ss_dssp TTCCEEECCSSCCC-CCGG-GT-TCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEE
T ss_pred CCCCEEEccCCcCC-CChh-Hc-cCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEE
Confidence 34555555555555 3333 22 45555555555555542 2 234444555555555555442 221 44444455555
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCccc
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS 136 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (155)
+++|.+++. +. +..+++|+.+++++|.+++. +. +..+++|+.+++++|.++
T Consensus 136 l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 136 LDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC
T ss_pred CCCCccCcC-cc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccC
Confidence 544444422 11 33444444444444444432 11 334444444444444443
No 74
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=9.7e-20 Score=138.05 Aligned_cols=133 Identities=20% Similarity=0.283 Sum_probs=118.6
Q ss_pred CCchhhcCCCCccEEEccCccccc-----------------cCCcccc--CCCCCcEEEcccCcCCCCcchhhhCCCccc
Q 036127 18 LPKNIGSYLPYLKALFLDKNMFHG-----------------KIPSALS--KCKQLQQLNLQFNNLSGAIPKEIGNLTMLK 78 (155)
Q Consensus 18 ~~~~~~~~l~~l~~l~l~~n~~~~-----------------~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 78 (155)
+|..+. .+++|+.|++++|.+++ .+|..+. .+++|+.|++++|.+....|..++.+++|+
T Consensus 440 IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 777766 79999999999999996 2788877 999999999999998888899999999999
Q ss_pred EEEeeccc-ccc-cCchhhhCCC-------CCceEEeeCccccccCCc--cccCCCCCcEEEccCCcccCCCCcccccCC
Q 036127 79 GIYLEYNK-LHG-EIPHEIANLL-------NLEDLVLGMNILVGVFPA--AIFNMSTLKVLMLINNSLSGSLPSRIDLSL 147 (155)
Q Consensus 79 ~L~l~~~~-~~~-~~~~~~~~~~-------~L~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 147 (155)
.|++++|. +++ .+|..+..++ +|+.|++++|.++ .+|. .+..+++|+.|++++|.++ .+| .+ +.+
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~-~~L 594 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AF-GTN 594 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC-CTT
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hh-cCC
Confidence 99999998 887 7887776655 9999999999999 5787 8999999999999999999 999 55 889
Q ss_pred CccceecC
Q 036127 148 PTVEVLDC 155 (155)
Q Consensus 148 ~~L~~l~l 155 (155)
++|+.|++
T Consensus 595 ~~L~~L~L 602 (876)
T 4ecn_A 595 VKLTDLKL 602 (876)
T ss_dssp SEESEEEC
T ss_pred CcceEEEC
Confidence 99999875
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=3.4e-19 Score=129.99 Aligned_cols=149 Identities=19% Similarity=0.246 Sum_probs=111.8
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCcccccc--CCccccCCCCCcEEEcccCcCCCCcc-hhhhCCCccc
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGK--IPSALSKCKQLQQLNLQFNNLSGAIP-KEIGNLTMLK 78 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~ 78 (155)
++|+.|++++|.+++.+|..+. .+++++.|++++|.+++. .|..+..+++|+.|++++|.+....| ..+..+++|+
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 5678888888888855555554 788888888888887742 23456778888888888888775344 3466778888
Q ss_pred EEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 79 GIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 79 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
.|++++|.+++..|..+. ++|+.+++++|.++. +|..+..+++|+.+++++|.++ .+|...+..+++|+++++
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEEC
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEe
Confidence 888888887755554432 688899999998886 5655668899999999999998 788774488888888875
No 76
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.81 E-value=8.8e-19 Score=110.28 Aligned_cols=133 Identities=26% Similarity=0.293 Sum_probs=113.7
Q ss_pred ccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127 4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83 (155)
Q Consensus 4 l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 83 (155)
.+.++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 467899999998 7886544 789999999999996656667889999999999999986656668899999999999
Q ss_pred cccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCC
Q 036127 84 YNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLP 140 (155)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 140 (155)
+|.+++..+..+..+++|+.+++.+|.+++..+..+..+++|+++++++|.+.+..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999996666667889999999999999998666667889999999999999985544
No 77
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.80 E-value=2.2e-19 Score=110.02 Aligned_cols=128 Identities=23% Similarity=0.262 Sum_probs=103.1
Q ss_pred CCCCccEEEccCcccc-ccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCce
Q 036127 25 YLPYLKALFLDKNMFH-GKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLED 103 (155)
Q Consensus 25 ~l~~l~~l~l~~n~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 103 (155)
..++++.+++++|.++ +..|..+..+++|+.|++++|.+... ..++.+++|+.|++++|.+++..|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3467888999998887 56677778888999999999888744 66778889999999999988667777777889999
Q ss_pred EEeeCcccccc-CCccccCCCCCcEEEccCCcccCCCCc---ccccCCCccceecC
Q 036127 104 LVLGMNILVGV-FPAAIFNMSTLKVLMLINNSLSGSLPS---RIDLSLPTVEVLDC 155 (155)
Q Consensus 104 l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~~~~~L~~l~l 155 (155)
+++++|.+++. .+..+..+++|+++++++|.++ ..|. ..+..+++|++||+
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccC
Confidence 99999988773 2367888899999999999998 5554 33478899998875
No 78
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=9.2e-19 Score=120.18 Aligned_cols=151 Identities=26% Similarity=0.208 Sum_probs=78.6
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCC------------------
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLS------------------ 64 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~------------------ 64 (155)
+++.|++++|.++ .+++..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 55 ~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n 133 (332)
T 2ft3_A 55 DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN 133 (332)
T ss_dssp TCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSS
T ss_pred CCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence 4566666666666 444433335666666666666666544555666666666666666554
Q ss_pred ---CCcchhhhCCCcccEEEeecccccc--cCchhhhCC--------------------CCCceEEeeCccccccCCccc
Q 036127 65 ---GAIPKEIGNLTMLKGIYLEYNKLHG--EIPHEIANL--------------------LNLEDLVLGMNILVGVFPAAI 119 (155)
Q Consensus 65 ---~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~--------------------~~L~~l~l~~~~~~~~~~~~~ 119 (155)
...+..+..+++|+.|++++|.++. ..+..+..+ ++|+.+++++|.+++..+..+
T Consensus 134 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l 213 (332)
T 2ft3_A 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDL 213 (332)
T ss_dssp CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSS
T ss_pred ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHh
Confidence 2222234444455555555444421 122222211 234444444444444334455
Q ss_pred cCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 120 FNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 120 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
..+++|+.+++++|.+++..+..+ ..+++|++|++
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L 248 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHL 248 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEEC
T ss_pred cCCCCCCEEECCCCcCCcCChhHh-hCCCCCCEEEC
Confidence 566666677777776663333333 66666666654
No 79
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=8.2e-19 Score=112.24 Aligned_cols=129 Identities=19% Similarity=0.273 Sum_probs=110.6
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
+++|+.|++++|.++ .++ .+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus 65 l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 65 AHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp CTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred CCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence 468999999999876 544 444 79999999999999987678889999999999999999986678889999999999
Q ss_pred Eeeccc-ccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCccc
Q 036127 81 YLEYNK-LHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS 136 (155)
Q Consensus 81 ~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (155)
++++|. ++ ..+ .+..+++|+.+++++|.+++ ++ .+..+++|+.+++++|.+.
T Consensus 142 ~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 142 DLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred EccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 999998 65 455 68889999999999999988 44 7888999999999999986
No 80
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=6.4e-19 Score=133.82 Aligned_cols=141 Identities=18% Similarity=0.184 Sum_probs=93.7
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccC-CccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKI-PSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
++++.|++++|.++ .+++..+..+++|++|++++|...+.+ +.+|..+++|+.|++++|.+....|..|..+++|+.|
T Consensus 24 ~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 46777888888777 443333336777777777777433233 5567777777777777777765556777777777777
Q ss_pred EeecccccccCchh--hhCCCCCceEEeeCccccccCC-ccccCCCCCcEEEccCCcccCCCCccc
Q 036127 81 YLEYNKLHGEIPHE--IANLLNLEDLVLGMNILVGVFP-AAIFNMSTLKVLMLINNSLSGSLPSRI 143 (155)
Q Consensus 81 ~l~~~~~~~~~~~~--~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~ 143 (155)
++++|.+++..+.. +..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+++..+..+
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc
Confidence 77777776544543 6677777777777777766443 456777777777777777764444433
No 81
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=136.22 Aligned_cols=142 Identities=23% Similarity=0.217 Sum_probs=82.4
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchh--hhCCCcccE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKE--IGNLTMLKG 79 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~--~~~~~~L~~ 79 (155)
++|+.|++++|...+.+++..+..+++|++|++++|.+.+..|.+|..+++|+.|++++|.+....+.. ++.+++|+.
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 456666666664444554444445666666666666666555566666666666666666665433332 556666666
Q ss_pred EEeecccccccCc-hhhhCCCCCceEEeeCccccccCCccccCC--CCCcEEEccCCcccCCCCccc
Q 036127 80 IYLEYNKLHGEIP-HEIANLLNLEDLVLGMNILVGVFPAAIFNM--STLKVLMLINNSLSGSLPSRI 143 (155)
Q Consensus 80 L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~--~~L~~l~l~~n~~~~~~~~~~ 143 (155)
|++++|.+++..+ ..++.+++|++|++++|.+++..+..+..+ ++|+.+++++|.+.+..|..+
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~ 194 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccch
Confidence 6666666654333 345666666666666666655555555544 566666666666655444433
No 82
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.80 E-value=8.9e-19 Score=109.37 Aligned_cols=128 Identities=26% Similarity=0.284 Sum_probs=110.9
Q ss_pred CCCCccEEEccCcccc-ccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCce
Q 036127 25 YLPYLKALFLDKNMFH-GKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLED 103 (155)
Q Consensus 25 ~l~~l~~l~l~~n~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 103 (155)
..++++.|++++|.++ +..|..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+++..|..+..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 4578999999999997 56777788899999999999998854 67888999999999999999768888888999999
Q ss_pred EEeeCccccccCC-ccccCCCCCcEEEccCCcccCCCCc---ccccCCCccceecC
Q 036127 104 LVLGMNILVGVFP-AAIFNMSTLKVLMLINNSLSGSLPS---RIDLSLPTVEVLDC 155 (155)
Q Consensus 104 l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~~~~~L~~l~l 155 (155)
+++++|.+++... ..+..+++|+.+++++|.++ ..|. ..+..+++|++|++
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETT
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecC
Confidence 9999999988432 67889999999999999999 6665 33488999999985
No 83
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=1.7e-18 Score=115.42 Aligned_cols=139 Identities=24% Similarity=0.373 Sum_probs=108.0
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
++|+.|++++|.++ .++ .+. .+++|+.|++++|.+++ .+. +..+++|+.|++++|.+.. .+. +.. ++|+.|+
T Consensus 41 ~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~ 112 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLF 112 (263)
T ss_dssp TTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEE
T ss_pred CcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEE
Confidence 57889999999888 676 444 78999999999999884 344 7888999999999998874 333 223 7888999
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+++|.+++ . ..+..+++|+.+++++|++++. + .+..+++|+.+++++|.++ .+ ..+ ..+++|++|++
T Consensus 113 L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~-~~-~~l-~~l~~L~~L~l 179 (263)
T 1xeu_A 113 LDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT-NT-GGL-TRLKKVNWIDL 179 (263)
T ss_dssp CCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC-BC-TTS-TTCCCCCEEEE
T ss_pred ccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc-ch-HHh-ccCCCCCEEeC
Confidence 99888874 3 3577888899999999988874 3 6778888999999999888 44 334 77888888764
No 84
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=9.5e-19 Score=126.44 Aligned_cols=127 Identities=20% Similarity=0.261 Sum_probs=103.2
Q ss_pred CCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCC--CcchhhhCCCcccEEEeecccccccCchh-hhCCCCC
Q 036127 25 YLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSG--AIPKEIGNLTMLKGIYLEYNKLHGEIPHE-IANLLNL 101 (155)
Q Consensus 25 ~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L 101 (155)
.++++++|++++|.+++..|..+..+++|+.|++++|.+.. ..|..+..+++|+.|++++|.+++.+|.. +..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 67888889999988887678888888899999999888874 34466788889999999999888646654 6677889
Q ss_pred ceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 102 EDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 102 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+.+++++|.+++..+..+. ++|+.+++++|.++ .+|..+ ..+++|++|++
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~-~~l~~L~~L~L 451 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQV-VKLEALQELNV 451 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGG-GGCTTCCEEEC
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhh-hcCCCCCEEEC
Confidence 9999999988776655443 68999999999998 899888 58999999875
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=2.6e-18 Score=116.90 Aligned_cols=141 Identities=21% Similarity=0.337 Sum_probs=114.7
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
+++|+.|++++|.++ .++ .+. .+++|++|++++|.+++ .+ .+..+++|+.|++++|.+... +. +..+++|+.|
T Consensus 84 l~~L~~L~L~~n~l~-~~~-~~~-~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L 156 (308)
T 1h6u_A 84 LTKITELELSGNPLK-NVS-AIA-GLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYL 156 (308)
T ss_dssp CCSCCEEECCSCCCS-CCG-GGT-TCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEE
T ss_pred CCCCCEEEccCCcCC-Cch-hhc-CCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEE
Confidence 468999999999998 555 344 78999999999999984 33 378899999999999998743 33 7888999999
Q ss_pred EeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
++++|.+++ .+. +..+++|+.+++++|.+++..+ +..+++|+.+++++|.++ .++. + ..+++|++|++
T Consensus 157 ~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~-~~~~-l-~~l~~L~~L~l 224 (308)
T 1h6u_A 157 SIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS-DVSP-L-ANTSNLFIVTL 224 (308)
T ss_dssp ECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCC-BCGG-G-TTCTTCCEEEE
T ss_pred EccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccC-cccc-c-cCCCCCCEEEc
Confidence 999999874 333 7888999999999999887433 788899999999999998 5553 4 78899888864
No 86
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.79 E-value=6.5e-19 Score=107.94 Aligned_cols=128 Identities=21% Similarity=0.165 Sum_probs=110.4
Q ss_pred CCccEEEccCCccc-ccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 2 SSISDIRLTNNRLS-GELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 2 ~~l~~l~l~~~~~~-~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
++++.|++++|.++ +.+|..+. .+++++.|++++|.+++. ..+..+++|+.|++++|.+....|..+..+++|+.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 46899999999998 67777555 799999999999999854 678889999999999999986678888889999999
Q ss_pred Eeeccccccc-CchhhhCCCCCceEEeeCccccccCC---ccccCCCCCcEEEccC
Q 036127 81 YLEYNKLHGE-IPHEIANLLNLEDLVLGMNILVGVFP---AAIFNMSTLKVLMLIN 132 (155)
Q Consensus 81 ~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~L~~l~l~~ 132 (155)
++++|.+++. .+..+..+++|+.+++++|.+++..+ ..+..+++|+.+++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999853 34778899999999999999988655 4788899999998763
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=120.42 Aligned_cols=145 Identities=20% Similarity=0.203 Sum_probs=69.6
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCcccccc--C--CccccCCCCCcEEEcccCcCCCCcch----hhhCC
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGK--I--PSALSKCKQLQQLNLQFNNLSGAIPK----EIGNL 74 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~--~--~~~~~~~~~L~~l~l~~~~~~~~~~~----~~~~~ 74 (155)
+|+.|++++|.++ .++...+..+++|++|++++|.+.+. . +..+..+++|++|++++|.+. ..+. .++.+
T Consensus 146 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l 223 (310)
T 4glp_A 146 GLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG 223 (310)
T ss_dssp CCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred CCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence 4445555555554 33333222445555555555543210 0 111233444555555555543 2222 13445
Q ss_pred CcccEEEeecccccccCchhhhCC---CCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccc
Q 036127 75 TMLKGIYLEYNKLHGEIPHEIANL---LNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVE 151 (155)
Q Consensus 75 ~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~ 151 (155)
++|+.|++++|.+++..|..+..+ ++|+++++++|.++. +|..+. ++|+.+++++|.++ .+|. + ..+++|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~-~~~~-~-~~l~~L~ 297 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLN-RAPQ-P-DELPEVD 297 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCC-SCCC-T-TSCCCCS
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCC-CCch-h-hhCCCcc
Confidence 556666666666654445444444 456666666666653 343332 45666666666665 4333 2 4556666
Q ss_pred eecC
Q 036127 152 VLDC 155 (155)
Q Consensus 152 ~l~l 155 (155)
.|++
T Consensus 298 ~L~L 301 (310)
T 4glp_A 298 NLTL 301 (310)
T ss_dssp CEEC
T ss_pred EEEC
Confidence 5553
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=3.6e-18 Score=115.39 Aligned_cols=140 Identities=27% Similarity=0.404 Sum_probs=119.7
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
++++.|++++|.++ .++. +. .+++|++|++++|.+++. +. +..+++|+.|++++|.+.. . ..+..+++|+.|+
T Consensus 46 ~~L~~L~l~~~~i~-~~~~-~~-~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCCC-CCTT-GG-GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEE
T ss_pred CcccEEEccCCCcc-cChh-Hh-cCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEE
Confidence 46899999999998 6654 44 799999999999999854 44 8899999999999999873 3 3488999999999
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+++|.+++. ..+..+++|+.+++++|.+++. ..+..+++|+.+++++|.++ .++. + ..+++|++|++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~-~~~~-l-~~l~~L~~L~L 185 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP-L-AGLTKLQNLYL 185 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG-G-TTCTTCCEEEC
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc-cchh-h-cCCCccCEEEC
Confidence 999999843 5678899999999999999884 57889999999999999999 5555 4 88999999875
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=5.4e-18 Score=124.48 Aligned_cols=141 Identities=28% Similarity=0.485 Sum_probs=107.0
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
|++|+.|++++|.++ .+++ +. .+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.. . ..+..+++|+.|
T Consensus 64 l~~L~~L~Ls~N~l~-~~~~-l~-~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L 136 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLT-DIKP-LT-NLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESL 136 (605)
T ss_dssp CTTCCEEECTTSCCC-CCGG-GG-GCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEE
T ss_pred CCCCCEEEeeCCCCC-CChh-hc-cCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEE
Confidence 467888888888887 5554 33 68888888888888773 33 57778888888888888773 2 447778888888
Q ss_pred EeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
++++|.+++. ..+..+++|+.|++++|.+.+..| +..+++|+.|++++|.++ .+|. + ..+++|+.|++
T Consensus 137 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~-~l~~-l-~~l~~L~~L~L 204 (605)
T 1m9s_A 137 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRA-L-AGLKNLDVLEL 204 (605)
T ss_dssp ECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCGG-G-TTCTTCSEEEC
T ss_pred ECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC-CChH-H-ccCCCCCEEEc
Confidence 8888888743 567788888888888888877544 778888888888888887 5543 4 77888888775
No 90
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=6e-19 Score=120.47 Aligned_cols=125 Identities=18% Similarity=0.141 Sum_probs=81.4
Q ss_pred CCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhh-hCCCcccEEEeecccccccCchhhhCCCCCceE
Q 036127 26 LPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEI-GNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDL 104 (155)
Q Consensus 26 l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 104 (155)
++++++|++++|.+++..+..+..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+++. +. ...+++|+.+
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L 196 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL 196 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEE
Confidence 4567777777777765545566666777777777777664444444 3566777777777776633 22 2236677777
Q ss_pred EeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 105 VLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
++++|.+++. +..+..+++|+.+++++|.++ .+|..+ ..+++|+.|++
T Consensus 197 ~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~-~~l~~L~~L~l 244 (317)
T 3o53_A 197 DLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKAL-RFSQNLEHFDL 244 (317)
T ss_dssp ECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTC-CCCTTCCEEEC
T ss_pred ECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHh-hcCCCCCEEEc
Confidence 7777777663 334666777777777777777 666655 66777777664
No 91
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=6.4e-18 Score=116.49 Aligned_cols=141 Identities=22% Similarity=0.306 Sum_probs=99.5
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
+|+.+++++|.++ .++. + ..+++++.|++++|.++. .+. +..+++|+.|++++|.+... ..+..+++|+.|++
T Consensus 200 ~L~~L~l~~n~l~-~~~~-~-~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 200 SLHYFTAYVNQIT-DITP-V-ANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNV 272 (347)
T ss_dssp TCCEEECCSSCCC-CCGG-G-GGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred ccceeecccCCCC-CCch-h-hcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEc
Confidence 3444555555444 2222 2 256777777777777763 333 66777888888888877632 45677788888888
Q ss_pred ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
++|.+++. ..+..+++|+.+++++|.+++..+..+..+++|+.+++++|.++ .++. + ..+++|+.||+
T Consensus 273 ~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~-~-~~l~~L~~L~l 340 (347)
T 4fmz_A 273 GSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT-DIRP-L-ASLSKMDSADF 340 (347)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC-CCGG-G-GGCTTCSEESS
T ss_pred cCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc-cccC-h-hhhhccceeeh
Confidence 88887743 45677888888888888888777777888888999999999888 4444 4 77888888875
No 92
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=1.2e-19 Score=123.87 Aligned_cols=148 Identities=22% Similarity=0.175 Sum_probs=120.3
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccc-cCCCCCcEEEcccCcCCCCcchhhhCCCcccE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSAL-SKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKG 79 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 79 (155)
+++|+.|++++|.++ .+++..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+.. .+. ...+++|+.
T Consensus 119 ~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~ 195 (317)
T 3o53_A 119 GQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKT 195 (317)
T ss_dssp CSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCE
T ss_pred cCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCE
Confidence 356888888888888 5555444478999999999999986666665 468999999999999873 333 335889999
Q ss_pred EEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCccc-CCCCcccccCCCccceec
Q 036127 80 IYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLS-GSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 80 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~~L~~l~ 154 (155)
|++++|.++ .+|..+..+++|+.+++++|.++. +|..+..+++|+.+++++|.+. +.+|..+ ..+++|+.++
T Consensus 196 L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~-~~~~~L~~l~ 268 (317)
T 3o53_A 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVA 268 (317)
T ss_dssp EECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHH-HTCHHHHHHH
T ss_pred EECCCCcCC-cchhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHH-hccccceEEE
Confidence 999999998 456668889999999999999987 6777889999999999999998 5666555 7777777654
No 93
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=6.5e-19 Score=126.62 Aligned_cols=144 Identities=19% Similarity=0.163 Sum_probs=97.0
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhh-CCCcccEEE
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIG-NLTMLKGIY 81 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~L~ 81 (155)
+|+.|++++|.++ .++.. .+++|+.|++++|.+++..+..+..+++|+.|++++|.+....|..+. .+++|+.|+
T Consensus 100 ~L~~L~L~~N~l~-~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 100 SIETLHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TCCEEECCSSCCC-CEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CcCEEECcCCcCC-CCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 3444444444444 22222 356777777777777766566677777788888888877755555554 577788888
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+++|.+++. +. ...+++|+.|++++|.+++.. ..+..+++|+.+++++|.++ .+|..+ ..+++|+.|++
T Consensus 176 Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~-~lp~~l-~~l~~L~~L~l 244 (487)
T 3oja_A 176 LQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKAL-RFSQNLEHFDL 244 (487)
T ss_dssp CTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTC-CCCTTCCEEEC
T ss_pred cCCCccccc-cc-cccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCc-ccchhh-ccCCCCCEEEc
Confidence 888777643 22 234777888888888887743 34777788888888888887 577665 67777777764
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=4.4e-19 Score=120.75 Aligned_cols=148 Identities=18% Similarity=0.128 Sum_probs=72.9
Q ss_pred CccEEEccCCcccccCCchhh-cCCCCccEEEccCccccccCC----ccccCCCCCcEEEcccCcCCCCcchhhhCCCcc
Q 036127 3 SISDIRLTNNRLSGELPKNIG-SYLPYLKALFLDKNMFHGKIP----SALSKCKQLQQLNLQFNNLSGAIPKEIGNLTML 77 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~-~~l~~l~~l~l~~n~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 77 (155)
+|+.|++++|.+++..|..++ ..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+....+..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 356666666666544444431 245555555555555543222 122334455555555555543334444455555
Q ss_pred cEEEeecccccc---------------------------cCch----hhhCCCCCceEEeeCccccccCCccccCC---C
Q 036127 78 KGIYLEYNKLHG---------------------------EIPH----EIANLLNLEDLVLGMNILVGVFPAAIFNM---S 123 (155)
Q Consensus 78 ~~L~l~~~~~~~---------------------------~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~~~~~---~ 123 (155)
+.|++++|.+.+ ..+. .+..+++|+++++++|.+++..|..+..+ +
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 555555554321 1111 12344555556666655555444444443 4
Q ss_pred CCcEEEccCCcccCCCCcccccCCCccceec
Q 036127 124 TLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 124 ~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 154 (155)
+|+++++++|.++ .+|..+. ++|++||
T Consensus 252 ~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~ 278 (310)
T 4glp_A 252 ALNSLNLSFAGLE-QVPKGLP---AKLRVLD 278 (310)
T ss_dssp TCCCEECCSSCCC-SCCSCCC---SCCSCEE
T ss_pred cCCEEECCCCCCC-chhhhhc---CCCCEEE
Confidence 5666666666665 5555441 4555554
No 95
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=1.6e-18 Score=124.61 Aligned_cols=146 Identities=22% Similarity=0.233 Sum_probs=88.8
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccC---------------------
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN--------------------- 61 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~--------------------- 61 (155)
+|+.|++++|.++ .+++..+..+++|++|++++|.+++..+ +..+++|+.|++++|
T Consensus 35 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 35 NVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence 6777777777777 4444444467777777777777664332 445555555554444
Q ss_pred -------------------cCCCCcchhhhCCCcccEEEeecccccccCchhhh-CCCCCceEEeeCccccccCCccccC
Q 036127 62 -------------------NLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIA-NLLNLEDLVLGMNILVGVFPAAIFN 121 (155)
Q Consensus 62 -------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~ 121 (155)
.+....|..++.+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++. + ....
T Consensus 112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~ 189 (487)
T 3oja_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVV 189 (487)
T ss_dssp CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCC
T ss_pred CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-cccc
Confidence 33333344455566666666666666655555554 566666666666666654 2 2234
Q ss_pred CCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 122 MSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 122 ~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+++|+.|++++|.++ .+|..+ ..+++|+.||+
T Consensus 190 l~~L~~L~Ls~N~l~-~~~~~~-~~l~~L~~L~L 221 (487)
T 3oja_A 190 FAKLKTLDLSSNKLA-FMGPEF-QSAAGVTWISL 221 (487)
T ss_dssp CTTCCEEECCSSCCC-EECGGG-GGGTTCSEEEC
T ss_pred CCCCCEEECCCCCCC-CCCHhH-cCCCCccEEEe
Confidence 677777777777777 455554 66777777764
No 96
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=3e-18 Score=125.04 Aligned_cols=128 Identities=25% Similarity=0.272 Sum_probs=106.4
Q ss_pred cCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCC--cchhhhCCCcccEEEeecccccccCch-hhhCCCC
Q 036127 24 SYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGA--IPKEIGNLTMLKGIYLEYNKLHGEIPH-EIANLLN 100 (155)
Q Consensus 24 ~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~ 100 (155)
..++++++|++++|.+++..+..+..+++|+.|++++|.+... .|..+..+++|+.|++++|.+++..|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 3678899999999999877788888999999999999988742 245678889999999999999864554 4677889
Q ss_pred CceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 101 LEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 101 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
|+.+++++|.+++..+..+. ++|+.+++++|.++ .+|..+ ..+++|++|++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~-~~l~~L~~L~L 480 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDV-THLQALQELNV 480 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTT-TSSCCCSEEEC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhh-cCCCCCCEEEC
Confidence 99999999998876554443 68999999999999 899888 58999999885
No 97
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=6.4e-18 Score=107.72 Aligned_cols=123 Identities=22% Similarity=0.293 Sum_probs=107.5
Q ss_pred ccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcch-hhhCCCcccEEEeecccccccCchhhhCCCCCceEEee
Q 036127 29 LKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPK-EIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLG 107 (155)
Q Consensus 29 l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 107 (155)
.+.++++++.++ .+|..+.. +++.|++++|.+....+. .++.+++|+.|++++|.+++..|..+..+++|+.++++
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 478999999997 66765543 899999999999855443 48899999999999999998888999999999999999
Q ss_pred CccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 108 MNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 108 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+|.+++..+..+..+++|+++++++|.+++..|..+ ..+++|++|++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L 133 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF-EHLNSLTSLNL 133 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS-TTCTTCCEEEC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh-hcCCCCCEEEe
Confidence 999999888889999999999999999996667666 88999999875
No 98
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.5e-17 Score=106.14 Aligned_cols=122 Identities=22% Similarity=0.314 Sum_probs=107.7
Q ss_pred ccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeC
Q 036127 29 LKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGM 108 (155)
Q Consensus 29 l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 108 (155)
-++++++++.++ .+|..+. ++++.|++++|.+. ..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 12 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 467899999998 6676543 58999999999998 6778899999999999999999977778899999999999999
Q ss_pred ccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 109 NILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 109 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
|.++...+..+..+++|+.|++++|.++ .+|...+..+++|+.|++
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEe
Confidence 9999988888999999999999999999 777765588999999875
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=2e-19 Score=123.52 Aligned_cols=151 Identities=17% Similarity=0.185 Sum_probs=66.1
Q ss_pred CCccEEEccCCccccc-CCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccC-cCCCC-cchhhhCCCccc
Q 036127 2 SSISDIRLTNNRLSGE-LPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFN-NLSGA-IPKEIGNLTMLK 78 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~-~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~~L~ 78 (155)
++|+.|++++|.+++. ++..+. .+++|++|++++|.+++..+..+..+++|+.|++++| .+... .+..+..+++|+
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILS-QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHT-TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCEEEccCCCcCHHHHHHHHh-hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 3455555555554422 332222 4555555555555544334444444555555555555 23311 233344445555
Q ss_pred EEEeecc-ccccc-CchhhhCCC-CCceEEeeCc--ccc-ccCCccccCCCCCcEEEccCCc-ccCCCCcccccCCCccc
Q 036127 79 GIYLEYN-KLHGE-IPHEIANLL-NLEDLVLGMN--ILV-GVFPAAIFNMSTLKVLMLINNS-LSGSLPSRIDLSLPTVE 151 (155)
Q Consensus 79 ~L~l~~~-~~~~~-~~~~~~~~~-~L~~l~l~~~--~~~-~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~~L~ 151 (155)
.|++++| .+++. .+..+..++ +|+++++++| .++ ..++..+..+++|+.+++++|. +++..+..+ ..+++|+
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~ 250 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQ 250 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCC
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCC
Confidence 5555555 44322 233344444 4555555444 222 1123333344444444444444 332333333 3444444
Q ss_pred eec
Q 036127 152 VLD 154 (155)
Q Consensus 152 ~l~ 154 (155)
+|+
T Consensus 251 ~L~ 253 (336)
T 2ast_B 251 HLS 253 (336)
T ss_dssp EEE
T ss_pred Eee
Confidence 443
No 100
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.76 E-value=2e-17 Score=113.97 Aligned_cols=142 Identities=20% Similarity=0.281 Sum_probs=92.9
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
++|+.|++++|.++ .++. +. .+++++.+++++|.+... +. +..+++|+.|++++|.+... +. +..+++|+.|+
T Consensus 177 ~~L~~L~l~~n~l~-~~~~-~~-~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~ 249 (347)
T 4fmz_A 177 TDLYSLSLNYNQIE-DISP-LA-SLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLE 249 (347)
T ss_dssp TTCSEEECTTSCCC-CCGG-GG-GCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEE
T ss_pred CCCCEEEccCCccc-cccc-cc-CCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEE
Confidence 34555555555555 3333 22 455566666666655522 22 56667777777777777633 33 66777788888
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+++|.+++. ..+..+++|+.+++++|.+++. ..+..+++|+.+++++|.+++..+..+ +.+++|++|++
T Consensus 250 l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L 318 (347)
T 4fmz_A 250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVI-GGLTNLTTLFL 318 (347)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHH-HTCTTCSEEEC
T ss_pred CCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHh-hccccCCEEEc
Confidence 888777632 4566778888888888877763 356777888888888888875554545 77888888765
No 101
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.75 E-value=5.2e-17 Score=116.11 Aligned_cols=139 Identities=27% Similarity=0.362 Sum_probs=72.2
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
+|+.|++++|.++ .+++ + ..+++|+.|++++|.+.+. +. +..+++|+.|++++|.+.... . +..+++|+.|++
T Consensus 244 ~L~~L~l~~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L~L 316 (466)
T 1o6v_A 244 NLTDLDLANNQIS-NLAP-L-SGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDIS-P-ISNLKNLTYLTL 316 (466)
T ss_dssp TCSEEECCSSCCC-CCGG-G-TTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCG-G-GGGCTTCSEEEC
T ss_pred CCCEEECCCCccc-cchh-h-hcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCch-h-hcCCCCCCEEEC
Confidence 4444444444444 2222 2 2445555555555554422 22 444555555555555554221 1 445556666666
Q ss_pred ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
++|.+++..| +..+++|+.+++.+|.+++. ..+..+++|+.+++++|.+++..| + ..+++|+.|++
T Consensus 317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~l 382 (466)
T 1o6v_A 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--L-ANLTRITQLGL 382 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--G-TTCTTCCEEEC
T ss_pred cCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--h-hcCCCCCEEec
Confidence 6665553333 44556666666666665553 245566666666666666664443 3 56666666553
No 102
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.75 E-value=6.6e-18 Score=106.21 Aligned_cols=129 Identities=18% Similarity=0.210 Sum_probs=80.5
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
.+++.|++++|.++ .++. +....++++.|++++|.+++. ..+..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus 19 ~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 45667777777776 5543 332334777777777776633 4566667777777777776633334446667777777
Q ss_pred eecccccccCch--hhhCCCCCceEEeeCccccccCCc----cccCCCCCcEEEccCCccc
Q 036127 82 LEYNKLHGEIPH--EIANLLNLEDLVLGMNILVGVFPA----AIFNMSTLKVLMLINNSLS 136 (155)
Q Consensus 82 l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~----~~~~~~~L~~l~l~~n~~~ 136 (155)
+++|.++ .+|. .+..+++|+.+++++|.++. .|. .+..+++|+.+++++|...
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777765 3444 56666777777777777665 333 3666677777777666554
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=2.2e-17 Score=121.32 Aligned_cols=140 Identities=27% Similarity=0.412 Sum_probs=119.7
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
.+|+.|++++|.+. .++ .+. .+++|+.|++++|.+.+. +. +..+++|+.|++++|.+.. . ..+..+++|+.|+
T Consensus 43 ~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 43 NSIDQIIANNSDIK-SVQ-GIQ-YLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLS 115 (605)
T ss_dssp TTCCCCBCTTCCCC-CCT-TGG-GCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEE
T ss_pred CCCCEEECcCCCCC-CCh-HHc-cCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEE
Confidence 57889999999998 666 344 799999999999999854 33 8899999999999999873 3 3688999999999
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+++|.+.+ ...+..+++|+.|++++|.+++. ..+..+++|+.|++++|.++ .++. + ..+++|+.|+|
T Consensus 116 Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~~~~-l-~~l~~L~~L~L 182 (605)
T 1m9s_A 116 LEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP-L-AGLTKLQNLYL 182 (605)
T ss_dssp CTTSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC-CCGG-G-TTCTTCCEEEC
T ss_pred ecCCCCCC--CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC-Cchh-h-ccCCCCCEEEC
Confidence 99999984 35688899999999999999885 57889999999999999999 4444 4 88999999986
No 104
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=7.2e-17 Score=101.50 Aligned_cols=124 Identities=21% Similarity=0.188 Sum_probs=105.5
Q ss_pred CccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEee
Q 036127 28 YLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLG 107 (155)
Q Consensus 28 ~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 107 (155)
..+.++++++.++ ..|..+ .++++.|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.++++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4578899999988 556543 3689999999999986656678899999999999999986656667899999999999
Q ss_pred CccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 108 MNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 108 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+|.+++..+..+..+++|+++++++|.++ .+|..++..+++|++|++
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEe
Confidence 99999877777889999999999999999 777766588999999875
No 105
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=1.8e-18 Score=118.70 Aligned_cols=153 Identities=20% Similarity=0.285 Sum_probs=121.0
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCc-cccc-cCCccccCCCCCcEEEcccC-cCCCC-cchhhhCCC-
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKN-MFHG-KIPSALSKCKQLQQLNLQFN-NLSGA-IPKEIGNLT- 75 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n-~~~~-~~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~- 75 (155)
+++|+.|++++|.+++..+..+. .+++|++|++++| .+++ ..+..+..+++|+.|++++| .+... .+..+..++
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 195 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred CCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence 46899999999998866666666 6999999999999 5664 24555778999999999999 77643 466678899
Q ss_pred cccEEEeecc--ccc-ccCchhhhCCCCCceEEeeCcc-ccccCCccccCCCCCcEEEccCCc-ccCCCCcccccCCCcc
Q 036127 76 MLKGIYLEYN--KLH-GEIPHEIANLLNLEDLVLGMNI-LVGVFPAAIFNMSTLKVLMLINNS-LSGSLPSRIDLSLPTV 150 (155)
Q Consensus 76 ~L~~L~l~~~--~~~-~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~~L 150 (155)
+|+.|++++| .++ ..++..+..+++|+.+++.+|. +++..+..+..+++|+.+++++|. +.......+ +.+++|
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L 274 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL-GEIPTL 274 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG-GGCTTC
T ss_pred CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCC
Confidence 9999999999 444 3456777889999999999998 776667788899999999999995 332211234 779999
Q ss_pred ceecC
Q 036127 151 EVLDC 155 (155)
Q Consensus 151 ~~l~l 155 (155)
+.|++
T Consensus 275 ~~L~l 279 (336)
T 2ast_B 275 KTLQV 279 (336)
T ss_dssp CEEEC
T ss_pred CEEec
Confidence 99875
No 106
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.73 E-value=2.5e-17 Score=103.55 Aligned_cols=125 Identities=20% Similarity=0.224 Sum_probs=104.6
Q ss_pred CCCCccEEEccCccccccCCccccCC-CCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCce
Q 036127 25 YLPYLKALFLDKNMFHGKIPSALSKC-KQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLED 103 (155)
Q Consensus 25 ~l~~l~~l~l~~n~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 103 (155)
.+++++.|++++|.++ ..+. +..+ ++|+.|++++|.+... ..+..+++|+.|++++|.+++..+..+..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 5789999999999998 4454 4444 4999999999998843 56888999999999999998554455588999999
Q ss_pred EEeeCccccccCCc--cccCCCCCcEEEccCCcccCCCCcc---cccCCCccceecC
Q 036127 104 LVLGMNILVGVFPA--AIFNMSTLKVLMLINNSLSGSLPSR---IDLSLPTVEVLDC 155 (155)
Q Consensus 104 l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~---~~~~~~~L~~l~l 155 (155)
+++++|.++. +|. .+..+++|+.+++++|.++ .+|.. ++..+++|++||+
T Consensus 93 L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 93 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred EECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCC
Confidence 9999999977 454 7889999999999999998 77775 3388999999985
No 107
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.72 E-value=7.4e-20 Score=117.21 Aligned_cols=146 Identities=24% Similarity=0.322 Sum_probs=115.1
Q ss_pred CccEEEccCCcccccCCc------hhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCc
Q 036127 3 SISDIRLTNNRLSGELPK------NIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTM 76 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~------~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 76 (155)
.++.++++.+.+.+.+|. .+. .++++++|++++|.++. .| .+..+++|+.|++++|.+. ..|..+..+++
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred cccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 345555666666655554 555 79999999999999984 56 7888999999999999988 66777777889
Q ss_pred ccEEEeecccccccCchhhhCCCCCceEEeeCccccccCC-ccccCCCCCcEEEccCCcccCCCCc---------ccccC
Q 036127 77 LKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFP-AAIFNMSTLKVLMLINNSLSGSLPS---------RIDLS 146 (155)
Q Consensus 77 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~---------~~~~~ 146 (155)
|+.|++++|.+++ +| .+..+++|+.+++++|.++...+ ..+..+++|+++++++|.+++..|. .++..
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 9999999999984 44 67788999999999999987432 4688899999999999999755443 12377
Q ss_pred CCccceec
Q 036127 147 LPTVEVLD 154 (155)
Q Consensus 147 ~~~L~~l~ 154 (155)
+++|++||
T Consensus 173 l~~L~~Ld 180 (198)
T 1ds9_A 173 LPNLKKLD 180 (198)
T ss_dssp CSSCSEEC
T ss_pred CCCcEEEC
Confidence 88888886
No 108
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.72 E-value=2.9e-16 Score=112.25 Aligned_cols=120 Identities=30% Similarity=0.411 Sum_probs=63.2
Q ss_pred CCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceE
Q 036127 25 YLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDL 104 (155)
Q Consensus 25 ~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 104 (155)
.+++|+.|++++|.+.+..+ +..+++|+.|++++|.+... +. +..+++|+.|++++|.+++..+ +..+++|+.+
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 34445555555554442211 44455555555555555422 22 4455555566665555553222 4555666666
Q ss_pred EeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 105 VLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
++++|.+++..+ +..+++|+.+++++|.++ .++ .+ +.+++|++|++
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~-~l-~~l~~L~~L~l 360 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVS-DVS-SL-ANLTNINWLSA 360 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCC-CCG-GG-TTCTTCCEEEC
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccC-Cch-hh-ccCCCCCEEeC
Confidence 666666655433 456666666666666666 332 23 56667666654
No 109
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=2e-18 Score=129.20 Aligned_cols=112 Identities=26% Similarity=0.315 Sum_probs=63.9
Q ss_pred CCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceE
Q 036127 25 YLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDL 104 (155)
Q Consensus 25 ~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 104 (155)
.++.|+.|++++|.+. .++..+..+++|+.|++++|.+. ..|..++.+++|+.|++++|.++ .+|..+..+++|++|
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence 4555666666666655 44444445556666666666555 44555555666666666666655 445555555666666
Q ss_pred EeeCccccccCCccccCCCCCcEEEccCCcccCCCC
Q 036127 105 VLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLP 140 (155)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 140 (155)
++++|.++. +|..+..+++|+.|++++|.+++.+|
T Consensus 299 ~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 299 YFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp ECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred ECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCCh
Confidence 666665553 44445555666666666665554443
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.1e-16 Score=105.32 Aligned_cols=128 Identities=20% Similarity=0.286 Sum_probs=108.4
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
+++|+.|++++|.++ .++. +. .+++|+.|++++|.+++ .+. +.. ++|+.|++++|.+.. . ..+..+++|+.|
T Consensus 62 l~~L~~L~L~~N~i~-~~~~-l~-~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L 133 (263)
T 1xeu_A 62 FTNLKELHLSHNQIS-DLSP-LK-DLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEIL 133 (263)
T ss_dssp CTTCCEEECCSSCCC-CCGG-GT-TCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEE
T ss_pred CCCCCEEECCCCccC-CChh-hc-cCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEE
Confidence 468999999999999 6666 44 89999999999999984 443 233 899999999999984 3 358899999999
Q ss_pred EeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCc
Q 036127 81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPS 141 (155)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 141 (155)
++++|.+++. + .+..+++|+.+++++|.+++. ..+..+++|+.+++++|.++ ..|.
T Consensus 134 ~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~-~~~~ 189 (263)
T 1xeu_A 134 SIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV-NEPV 189 (263)
T ss_dssp ECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE-CCCE
T ss_pred ECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc-CCcc
Confidence 9999999853 4 688899999999999999885 67889999999999999998 4454
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=1.8e-16 Score=115.81 Aligned_cols=122 Identities=25% Similarity=0.278 Sum_probs=106.6
Q ss_pred CccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEee
Q 036127 28 YLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLG 107 (155)
Q Consensus 28 ~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 107 (155)
.++.|++++|.+++ +|. +..+++|+.|++++|.+. ..|..++.+++|+.|++++|.+++ +| .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 58899999999984 565 889999999999999998 778899999999999999999985 66 88999999999999
Q ss_pred CccccccC-CccccCCCCCcEEEccCCcccCCCCccc---ccCCCccceecC
Q 036127 108 MNILVGVF-PAAIFNMSTLKVLMLINNSLSGSLPSRI---DLSLPTVEVLDC 155 (155)
Q Consensus 108 ~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~---~~~~~~L~~l~l 155 (155)
+|.+++.. |..+..+++|+.+++++|.++ ..|..+ ...+|+|++||+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~-~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGG-GSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCC-CCccHHHHHHHHCcccCccCC
Confidence 99999966 889999999999999999999 444322 245899999885
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=2.8e-17 Score=123.09 Aligned_cols=137 Identities=27% Similarity=0.365 Sum_probs=98.6
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
..|+.|++++|.+. .+|..++ .+++|++|++++|.++ .+|..+..+++|+.|++++|.+. ..|..++.+++|+.|+
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred CCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence 45777788888777 7777777 6778888888888777 66777777788888888888777 5677777777888888
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCC-CCcEEEccCCcccCCCCccc
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMS-TLKVLMLINNSLSGSLPSRI 143 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~~ 143 (155)
+++|.++ .+|..++.+++|+.|++++|.+++.+|..+.... ....+++.+|.+++.+|..+
T Consensus 300 L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 300 FFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp CCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred CCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence 8887776 6677777777888888888877776665554332 12235677777776666544
No 113
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=7.9e-16 Score=109.86 Aligned_cols=117 Identities=21% Similarity=0.224 Sum_probs=79.6
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
++|+.|++++|.++ .+| .+. .+++|++|++++|.+++ .+ +..+++|+.|++++|.+... + ++.+++|+.|+
T Consensus 42 ~~L~~L~Ls~n~l~-~~~-~l~-~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSIT-DMT-GIE-KLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCC-CCT-TGG-GCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred CCCCEEEccCCCcc-cCh-hhc-ccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 56788888888888 555 444 67888888888888774 33 66777888888888877643 2 66777788888
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCC
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINN 133 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n 133 (155)
+++|.+++ .+ +..+++|+.+++++|.+++. + +..+++|+.+++++|
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLN 158 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTC
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCC
Confidence 88877764 33 66677777777777776652 2 334444444444444
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=2.7e-18 Score=120.05 Aligned_cols=107 Identities=20% Similarity=0.223 Sum_probs=51.4
Q ss_pred CCCCCcEEEcccCcCCCC-----cchhhhCCCcccEEEeeccccc----ccCchhhhCCCCCceEEeeCcccccc----C
Q 036127 49 KCKQLQQLNLQFNNLSGA-----IPKEIGNLTMLKGIYLEYNKLH----GEIPHEIANLLNLEDLVLGMNILVGV----F 115 (155)
Q Consensus 49 ~~~~L~~l~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~l~l~~~~~~~~----~ 115 (155)
.+++|+.|++++|.+... .+..+..+++|+.|++++|.++ ..+|..+..+++|+.|++++|.+++. +
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 344455555555544311 1113444555555555555553 23444455555555555555555442 2
Q ss_pred Ccccc--CCCCCcEEEccCCcccC----CCCcccccCCCccceecC
Q 036127 116 PAAIF--NMSTLKVLMLINNSLSG----SLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 116 ~~~~~--~~~~L~~l~l~~n~~~~----~~~~~~~~~~~~L~~l~l 155 (155)
+..+. .+++|+.+++++|.+++ .+|..++..+++|++|++
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 23332 25556666666666653 255444344555555553
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=5.8e-16 Score=112.97 Aligned_cols=130 Identities=28% Similarity=0.354 Sum_probs=74.8
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
+|+.|++++|.++ .+|. +. .+|+.|++++|.+++ +|. .+++|+.|++++|.+.. .|. .+++|+.|++
T Consensus 101 ~L~~L~Ls~N~l~-~ip~-l~---~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 101 SLEYLDACDNRLS-TLPE-LP---ASLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSV 167 (571)
T ss_dssp TCCEEECCSSCCS-CCCC-CC---TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCEEEccCCCCC-Ccch-hh---cCCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEEC
Confidence 4444455555444 2443 22 145555555555542 333 34556666666666552 333 3456666777
Q ss_pred ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCC-------cEEEccCCcccCCCCcccccCCCccceecC
Q 036127 83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTL-------KVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L-------~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
++|.+++ +|. +. ++|+.|++++|.++. +|. +.. +| +.+++++|.++ .+|..+ ..+++|+.|++
T Consensus 168 s~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l-~~l~~L~~L~L 237 (571)
T 3cvr_A 168 RNNQLTF-LPE-LP--ESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI-LSLDPTCTIIL 237 (571)
T ss_dssp CSSCCSC-CCC-CC--TTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGG-GGSCTTEEEEC
T ss_pred CCCCCCC-cch-hh--CCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHH-hcCCCCCEEEe
Confidence 7766663 444 33 677777777777765 444 433 56 88888888887 788777 55888888775
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=2e-17 Score=114.87 Aligned_cols=133 Identities=21% Similarity=0.192 Sum_probs=70.9
Q ss_pred CccEEEccCCcccccCCc----hhhcCCC-CccEEEccCccccccCCccccCC-----CCCcEEEcccCcCCCCcchh--
Q 036127 3 SISDIRLTNNRLSGELPK----NIGSYLP-YLKALFLDKNMFHGKIPSALSKC-----KQLQQLNLQFNNLSGAIPKE-- 70 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~----~~~~~l~-~l~~l~l~~n~~~~~~~~~~~~~-----~~L~~l~l~~~~~~~~~~~~-- 70 (155)
+|+.|++++|.++ ..+. ..+..++ ++++|++++|.++...+..+..+ ++|+.|++++|.+....+..
T Consensus 23 ~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 23 GVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 4667777777766 4443 2233555 67777777776664444444443 66667777666665443332
Q ss_pred --hhCC-CcccEEEeecccccccCchhhh----C-CCCCceEEeeCccccccC----CccccCCC-CCcEEEccCCccc
Q 036127 71 --IGNL-TMLKGIYLEYNKLHGEIPHEIA----N-LLNLEDLVLGMNILVGVF----PAAIFNMS-TLKVLMLINNSLS 136 (155)
Q Consensus 71 --~~~~-~~L~~L~l~~~~~~~~~~~~~~----~-~~~L~~l~l~~~~~~~~~----~~~~~~~~-~L~~l~l~~n~~~ 136 (155)
+... ++|+.|++++|.+++..+..+. . ..+|+++++++|.+++.. +..+...+ +|+++++++|.++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 2233 5666666666666544433322 2 245666666666555321 12223333 5555555555555
No 117
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=1.2e-17 Score=116.83 Aligned_cols=17 Identities=35% Similarity=0.422 Sum_probs=7.9
Q ss_pred ccCCCCCcEEEccCCcc
Q 036127 119 IFNMSTLKVLMLINNSL 135 (155)
Q Consensus 119 ~~~~~~L~~l~l~~n~~ 135 (155)
+..+++|+.|++++|.+
T Consensus 212 l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNTF 228 (386)
T ss_dssp GGGCTTCCEEECCSSCC
T ss_pred hhcCCCccEEECcCCCC
Confidence 33444444444444444
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=1.6e-15 Score=108.23 Aligned_cols=136 Identities=20% Similarity=0.231 Sum_probs=64.3
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCc--------------
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAI-------------- 67 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-------------- 67 (155)
++|+.|++++|.++ .++ +. .+++|++|++++|.+++ .+ +..+++|+.|++++|.+....
T Consensus 85 ~~L~~L~Ls~N~l~-~~~--~~-~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~ 157 (457)
T 3bz5_A 85 TNLTYLACDSNKLT-NLD--VT-PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHL 157 (457)
T ss_dssp TTCSEEECCSSCCS-CCC--CT-TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTT
T ss_pred CCCCEEECcCCCCc-eee--cC-CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCC
Confidence 44555555555555 332 22 45555555555555542 22 444445555555544443210
Q ss_pred -----chhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcc
Q 036127 68 -----PKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSR 142 (155)
Q Consensus 68 -----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 142 (155)
.-.+..+++|+.|++++|.+++ +| +..+++|+.+++++|.+++. .+..+++|+.+++++|.++ .+|
T Consensus 158 n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~-~ip-- 228 (457)
T 3bz5_A 158 NKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EID-- 228 (457)
T ss_dssp CSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS-CCC--
T ss_pred CCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc-ccC--
Confidence 0013344455555555555543 22 34445555555555555442 2444555555555555555 344
Q ss_pred cccCCCccceec
Q 036127 143 IDLSLPTVEVLD 154 (155)
Q Consensus 143 ~~~~~~~L~~l~ 154 (155)
+ ..+++|++|+
T Consensus 229 ~-~~l~~L~~L~ 239 (457)
T 3bz5_A 229 V-TPLTQLTYFD 239 (457)
T ss_dssp C-TTCTTCSEEE
T ss_pred c-cccCCCCEEE
Confidence 2 4455555544
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=6.9e-16 Score=112.70 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=106.7
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
.|+.|++++|.++ .+|. +. .+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.. .| .++.+++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~-~lp~-~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCS-SCCC-GG-GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCC-CCcC-cc-ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 4789999999999 6886 55 8999999999999999 788999999999999999999984 56 7899999999999
Q ss_pred ecccccccC-chhhhCCCCCceEEeeCccccccCCc---cccCCCCCcEEEc
Q 036127 83 EYNKLHGEI-PHEIANLLNLEDLVLGMNILVGVFPA---AIFNMSTLKVLML 130 (155)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~---~~~~~~~L~~l~l 130 (155)
++|.+++.. |..+..+++|+.+++++|++++.++. .+..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999765 89999999999999999999886542 2344788888864
No 120
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.67 E-value=8.3e-16 Score=96.13 Aligned_cols=107 Identities=22% Similarity=0.234 Sum_probs=87.5
Q ss_pred ccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127 4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83 (155)
Q Consensus 4 l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 83 (155)
.+.++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|+.|++++|.+....+..|..+++|+.|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 467889999888 7887654 788899999999986667778888999999999998886656667888899999999
Q ss_pred cccccccCchhhhCCCCCceEEeeCcccccc
Q 036127 84 YNKLHGEIPHEIANLLNLEDLVLGMNILVGV 114 (155)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 114 (155)
+|.+++..+..+..+++|+.+++.+|++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9988865556688888999999999887653
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=4.6e-16 Score=107.57 Aligned_cols=151 Identities=20% Similarity=0.168 Sum_probs=99.2
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCC-ccccCCCCCcE-EEcccCcCCCCcchhhhCCCcccE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIP-SALSKCKQLQQ-LNLQFNNLSGAIPKEIGNLTMLKG 79 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~-l~l~~~~~~~~~~~~~~~~~~L~~ 79 (155)
++++.|++++|.++ .+|...+..+++|++|++++|.+.+.++ .+|..++++.. +.+..|.+....+..|..+++|+.
T Consensus 30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 46788888888888 7888776678888888888888754444 45677776654 455567777555667778888888
Q ss_pred EEeecccccccCchhhhCC--------------------------CCCceEEeeCccccccCCccccCCCCCcEEEccC-
Q 036127 80 IYLEYNKLHGEIPHEIANL--------------------------LNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLIN- 132 (155)
Q Consensus 80 L~l~~~~~~~~~~~~~~~~--------------------------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~- 132 (155)
+++++|.++...+..+... ..++.+++++|.++.+.+ ......+++.+++.+
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~-~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN-SAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT-TSSTTEEEEEEECTTC
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh-hhccccchhHHhhccC
Confidence 8888887654322222111 235556666666665333 333345677777764
Q ss_pred CcccCCCCcccccCCCccceecC
Q 036127 133 NSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 133 n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
|.++ .+|..++..+++|++||+
T Consensus 188 n~l~-~i~~~~f~~l~~L~~LdL 209 (350)
T 4ay9_X 188 NNLE-ELPNDVFHGASGPVILDI 209 (350)
T ss_dssp TTCC-CCCTTTTTTEECCSEEEC
T ss_pred Cccc-CCCHHHhccCcccchhhc
Confidence 4555 777666577778887775
No 122
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.66 E-value=1.6e-15 Score=94.82 Aligned_cols=107 Identities=22% Similarity=0.216 Sum_probs=94.4
Q ss_pred CccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEee
Q 036127 28 YLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLG 107 (155)
Q Consensus 28 ~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 107 (155)
..+.+++++|.++ .+|..+. ++++.|++++|.+....+..|..+++|+.|++++|.+++..+..+..+++|++++++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4678999999998 5676553 789999999999997778889999999999999999996666677899999999999
Q ss_pred CccccccCCccccCCCCCcEEEccCCcccC
Q 036127 108 MNILVGVFPAAIFNMSTLKVLMLINNSLSG 137 (155)
Q Consensus 108 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 137 (155)
+|++++..+..+..+++|+.+++++|.+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999999777779999999999999999873
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=3.6e-17 Score=113.53 Aligned_cols=79 Identities=20% Similarity=0.164 Sum_probs=35.4
Q ss_pred cccEEEeecccccccCchhh----hCC-CCCceEEeeCcccccc----CCccccC-CCCCcEEEccCCcccCCCCc---c
Q 036127 76 MLKGIYLEYNKLHGEIPHEI----ANL-LNLEDLVLGMNILVGV----FPAAIFN-MSTLKVLMLINNSLSGSLPS---R 142 (155)
Q Consensus 76 ~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~l~l~~~~~~~~----~~~~~~~-~~~L~~l~l~~n~~~~~~~~---~ 142 (155)
+|+.|++++|.+++..+..+ ... ++|+.+++++|.+++. ++..+.. .++|+.+++++|.+++..+. .
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 247 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence 45555555555543333222 222 3555555555555442 1222322 23566666666665522221 1
Q ss_pred cccCCCccceec
Q 036127 143 IDLSLPTVEVLD 154 (155)
Q Consensus 143 ~~~~~~~L~~l~ 154 (155)
.+..+++|+.|+
T Consensus 248 ~~~~l~~L~~L~ 259 (362)
T 3goz_A 248 LKDSLKHLQTVY 259 (362)
T ss_dssp TTTTTTTCSEEE
T ss_pred HHhcCCCccEEE
Confidence 123455555554
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=8.2e-16 Score=106.29 Aligned_cols=152 Identities=20% Similarity=0.158 Sum_probs=113.1
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccE-EEccCccccccCCccccCCCCCcEEEcccCcCCCCcchh---------
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKA-LFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKE--------- 70 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~-l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~--------- 70 (155)
+++|+.|++++|.+.+.++..++..++++.. +.+.+|.+....+..|..+++|+.+++++|.+....+..
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~ 132 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE
T ss_pred CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhh
Confidence 4689999999999875788887777888765 556668888666778888999999999888775322211
Q ss_pred ----------------hhCC-CcccEEEeecccccccCchhhhCCCCCceEEeeC-ccccccCCccccCCCCCcEEEccC
Q 036127 71 ----------------IGNL-TMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGM-NILVGVFPAAIFNMSTLKVLMLIN 132 (155)
Q Consensus 71 ----------------~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l~~ 132 (155)
|..+ ..++.|++++|.++ .++.......+++.+++.+ |.++...+.+|..+++|+.+++++
T Consensus 133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred hhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence 2222 24677888888887 4455444556788999875 567665556789999999999999
Q ss_pred CcccCCCCcccccCCCccceec
Q 036127 133 NSLSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 133 n~~~~~~~~~~~~~~~~L~~l~ 154 (155)
|.++ .+|...+.++++|+.++
T Consensus 212 N~l~-~lp~~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 212 TRIH-SLPSYGLENLKKLRARS 232 (350)
T ss_dssp SCCC-CCCSSSCTTCCEEECTT
T ss_pred CCcC-ccChhhhccchHhhhcc
Confidence 9999 88887667787777654
No 125
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.65 E-value=3.5e-15 Score=93.65 Aligned_cols=105 Identities=25% Similarity=0.245 Sum_probs=80.7
Q ss_pred cEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeec
Q 036127 5 SDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEY 84 (155)
Q Consensus 5 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 84 (155)
+.++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56788888887 7777654 7788888888888866677788888888888888888754445567788888888888
Q ss_pred ccccccCchhhhCCCCCceEEeeCccccc
Q 036127 85 NKLHGEIPHEIANLLNLEDLVLGMNILVG 113 (155)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 113 (155)
|.+++..+..+..+++|+.+++.+|.+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 88875444457778888888888887765
No 126
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.64 E-value=3e-15 Score=93.90 Aligned_cols=109 Identities=22% Similarity=0.238 Sum_probs=93.2
Q ss_pred ccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeC
Q 036127 29 LKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGM 108 (155)
Q Consensus 29 l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 108 (155)
-+.+++++|.++ .+|..+. ++|+.|++++|.+....|..|..+++|+.|++++|.+++..+..+..+++|+.+++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 468899999997 6776654 7899999999999977788899999999999999999965555578899999999999
Q ss_pred ccccccCCccccCCCCCcEEEccCCcccCCCCc
Q 036127 109 NILVGVFPAAIFNMSTLKVLMLINNSLSGSLPS 141 (155)
Q Consensus 109 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 141 (155)
|.+++..+..+..+++|+.+++++|.+. ..+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~-c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD-CECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC-TTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc-cccc
Confidence 9999866667899999999999999987 4443
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.63 E-value=7.7e-15 Score=107.09 Aligned_cols=95 Identities=27% Similarity=0.352 Sum_probs=44.9
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
+++.|++++|.++ .+|..++ ++++.|++++|.++ .+| ..+++|+.|++++|.+.. .|. +.. +|+.|++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCC-ccCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 4555666666655 3554432 45555555555555 333 234455555555555542 333 222 4455555
Q ss_pred ecccccccCchhhhCCCCCceEEeeCccccc
Q 036127 83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVG 113 (155)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 113 (155)
++|.+++ +|. .+++|+.|++++|.+++
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~ 154 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM 154 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc
Confidence 5554442 332 23444444444444443
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=3.6e-15 Score=102.26 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=116.3
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCcccc--------------------------------
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALS-------------------------------- 48 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~-------------------------------- 48 (155)
|.+|+.+++.. .++ .++..+|..+++|+.+++.+|.+....+.+|.
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 46788888887 777 78888887888888888888764211111111
Q ss_pred ----------------------------------------------CCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 49 ----------------------------------------------KCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 49 ----------------------------------------------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
.+++|+.+++++|.+.......|..+.+|+.+++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 2678899999988887666678889999999999
Q ss_pred ecccccccCchhhhCCCCCc-eEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127 83 EYNKLHGEIPHEIANLLNLE-DLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 154 (155)
..| ++...+..+..+.+|+ .+++.. .++...+.+|.++++|+.+++.+|.++ .++...|.++++|+.+.
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence 887 6656677889999999 999988 677767789999999999999999998 77777778999998774
No 129
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=2.2e-17 Score=117.57 Aligned_cols=79 Identities=22% Similarity=0.240 Sum_probs=36.7
Q ss_pred cccEEEeeccccccc----CchhhhCCCCCceEEeeCccccccCCccccC-----CCCCcEEEccCCcccC----CCCcc
Q 036127 76 MLKGIYLEYNKLHGE----IPHEIANLLNLEDLVLGMNILVGVFPAAIFN-----MSTLKVLMLINNSLSG----SLPSR 142 (155)
Q Consensus 76 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-----~~~L~~l~l~~n~~~~----~~~~~ 142 (155)
+|+.|++++|.+++. ++..+..+++|+.+++++|.+++..+..+.. .++|+++++++|.+++ .+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 444444444444322 2333344455555555555554432222221 3455556665555553 34443
Q ss_pred cccCCCccceecC
Q 036127 143 IDLSLPTVEVLDC 155 (155)
Q Consensus 143 ~~~~~~~L~~l~l 155 (155)
+ ..+++|++||+
T Consensus 394 l-~~~~~L~~L~l 405 (461)
T 1z7x_W 394 L-LANHSLRELDL 405 (461)
T ss_dssp H-HHCCCCCEEEC
T ss_pred H-HhCCCccEEEC
Confidence 3 44555555543
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.61 E-value=1.6e-14 Score=103.12 Aligned_cols=112 Identities=26% Similarity=0.350 Sum_probs=50.4
Q ss_pred CccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEee
Q 036127 28 YLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLG 107 (155)
Q Consensus 28 ~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 107 (155)
++++|++++|.+++ .| .+..+++|+.+++++|.+.. .|.. ..+|+.|++++|.+++ +| .++.+++|+.++++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 45555555555542 33 34555555555555555442 2221 1245555555555442 23 34445555555555
Q ss_pred CccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127 108 MNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 108 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 154 (155)
+|.+++ +|.. .++|+.+++++|.++ .+|. + +.+++|++|+
T Consensus 204 ~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~-~~l~~L~~L~ 243 (454)
T 1jl5_A 204 NNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-L-QNLPFLTTIY 243 (454)
T ss_dssp SSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-C-TTCTTCCEEE
T ss_pred CCcCCc-CCCC---cCcccEEECcCCcCC-cccc-c-CCCCCCCEEE
Confidence 554443 2211 124444444444444 4442 2 4444444444
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.60 E-value=2.4e-14 Score=105.54 Aligned_cols=71 Identities=25% Similarity=0.373 Sum_probs=51.2
Q ss_pred CcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127 75 TMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 75 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 154 (155)
++|+.|++++|.+++ +| ..+++|+.+++++|.++. +|. .+++|+.+++++|.++ .+|..+ ..+++|+.|+
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l-~~l~~L~~L~ 290 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESL-IHLSSETTVN 290 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGG-GGSCTTCEEE
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHH-hhccccCEEE
Confidence 456666666666653 34 345677777787777775 443 5678889999999988 888876 8889998887
Q ss_pred C
Q 036127 155 C 155 (155)
Q Consensus 155 l 155 (155)
+
T Consensus 291 L 291 (622)
T 3g06_A 291 L 291 (622)
T ss_dssp C
T ss_pred e
Confidence 5
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=7e-17 Score=103.33 Aligned_cols=128 Identities=23% Similarity=0.371 Sum_probs=107.0
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
+++|+.|++++|.++ .+| .+. .+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.. .| .+..+++|+.|
T Consensus 47 l~~L~~L~ls~n~l~-~l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 47 LKACKHLALSTNNIE-KIS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVL 120 (198)
T ss_dssp TTTCSEEECSEEEES-CCC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEE
T ss_pred CCCCCEEECCCCCCc-ccc-ccc-cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEE
Confidence 468999999999999 687 555 7999999999999998 677777778899999999999984 44 68889999999
Q ss_pred EeecccccccCc-hhhhCCCCCceEEeeCccccccCCc----------cccCCCCCcEEEccCCccc
Q 036127 81 YLEYNKLHGEIP-HEIANLLNLEDLVLGMNILVGVFPA----------AIFNMSTLKVLMLINNSLS 136 (155)
Q Consensus 81 ~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~----------~~~~~~~L~~l~l~~n~~~ 136 (155)
++++|.+++..+ ..+..+++|+++++.+|.+.+.+|. .+..+++|+.++ ++.++
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 999999984322 4788899999999999999776553 377889999987 67665
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.59 E-value=3.8e-14 Score=101.14 Aligned_cols=123 Identities=32% Similarity=0.518 Sum_probs=84.2
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
++|+.|++++|.++ .+| .+. .++++++|++++|.+++ .|..+ .+|+.|++++|.+.. .| .++.+++|+.|+
T Consensus 131 ~~L~~L~L~~n~l~-~lp-~~~-~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE-KLP-ELQ-NSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCS-SCC-CCT-TCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCC-CCc-ccC-CCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 46788888888888 577 344 78889999999998873 45432 478888888888774 44 477777888888
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCC
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLP 140 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 140 (155)
+++|.+++ +|.. .++|+.+++++|.++. +| .+..+++|+++++++|.++ .+|
T Consensus 202 l~~N~l~~-l~~~---~~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~l~ 253 (454)
T 1jl5_A 202 ADNNSLKK-LPDL---PLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLK-TLP 253 (454)
T ss_dssp CCSSCCSS-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCC
T ss_pred CCCCcCCc-CCCC---cCcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCC-ccc
Confidence 88777763 3332 2466677777776663 44 3566666666666666666 444
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.59 E-value=2.4e-16 Score=112.23 Aligned_cols=112 Identities=21% Similarity=0.217 Sum_probs=48.5
Q ss_pred CCccEEEccCCcccccCCchhhcCCC----CccEEEccCccccc----cCCccccCCCCCcEEEcccCcCCCCcchhhh-
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLP----YLKALFLDKNMFHG----KIPSALSKCKQLQQLNLQFNNLSGAIPKEIG- 72 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~----~l~~l~l~~n~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~- 72 (155)
++|+.|++++|.+++..+..+...++ ++++|++++|.++. ..+..+..+++|+.|++++|.+....+..+.
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 34555555555544222222222233 35555555555442 2234444555555555555554322111111
Q ss_pred ----CCCcccEEEeecccccccC----chhhhCCCCCceEEeeCccccc
Q 036127 73 ----NLTMLKGIYLEYNKLHGEI----PHEIANLLNLEDLVLGMNILVG 113 (155)
Q Consensus 73 ----~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~ 113 (155)
..++|+.|++++|.+++.. +..+..+++|+++++++|.++.
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 1234555555555444321 2333344555555555555443
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=2.8e-14 Score=97.83 Aligned_cols=150 Identities=14% Similarity=0.145 Sum_probs=104.8
Q ss_pred CCCccEEEccCCcccc-------------------cCCchhhcC--------CCCccEEEccCccccccCCccccCCCCC
Q 036127 1 MSSISDIRLTNNRLSG-------------------ELPKNIGSY--------LPYLKALFLDKNMFHGKIPSALSKCKQL 53 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~-------------------~~~~~~~~~--------l~~l~~l~l~~n~~~~~~~~~~~~~~~L 53 (155)
+++|+.|++++|.+.. .+|..+|.. +++|+.+.+.+ .++.....+|..|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 4679999999998871 356677777 89999999999 7775667789999999
Q ss_pred cEEEcccCcCCCCcchhhhC------------------------------------------------------------
Q 036127 54 QQLNLQFNNLSGAIPKEIGN------------------------------------------------------------ 73 (155)
Q Consensus 54 ~~l~l~~~~~~~~~~~~~~~------------------------------------------------------------ 73 (155)
+.++++.|.+....+..|..
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 99999988753222222221
Q ss_pred ------------------CCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCc-EEEccCCc
Q 036127 74 ------------------LTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLK-VLMLINNS 134 (155)
Q Consensus 74 ------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~-~l~l~~n~ 134 (155)
+++|+.+++.+|.++...+..+..|.+|+.+++..| +....+.+|.++++|+ .+.+.+ .
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence 456677777766666454556677777777777766 6665556777777777 777766 5
Q ss_pred ccCCCCcccccCCCccceec
Q 036127 135 LSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 135 ~~~~~~~~~~~~~~~L~~l~ 154 (155)
++ .++...|.++++|+.++
T Consensus 285 l~-~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 285 VT-AIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CC-EECTTTTTTCTTEEEEE
T ss_pred ce-EEchhhhhCCccCCEEE
Confidence 65 55555557777777665
No 136
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.54 E-value=2e-13 Score=100.66 Aligned_cols=94 Identities=20% Similarity=0.231 Sum_probs=49.0
Q ss_pred ccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127 4 ISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83 (155)
Q Consensus 4 l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 83 (155)
++.|+++++.++ .+|..+. ++++.|++++|.++ .+|. .+++|+.|++++|.+. ..|. .+++|+.|+++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 556666666666 5665443 56666666666665 3333 3455666666666655 2333 44555555555
Q ss_pred cccccccCchhhhCCCCCceEEeeCccccc
Q 036127 84 YNKLHGEIPHEIANLLNLEDLVLGMNILVG 113 (155)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 113 (155)
+|.+++ +|. .+++|+.|++.+|.++.
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~ 135 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS 135 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc
Confidence 555542 222 23344444444444433
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.48 E-value=2.9e-13 Score=93.28 Aligned_cols=104 Identities=21% Similarity=0.237 Sum_probs=83.2
Q ss_pred EEEccCC-cccccCCchhhcCCCCccEEEccC-ccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEee
Q 036127 6 DIRLTNN-RLSGELPKNIGSYLPYLKALFLDK-NMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLE 83 (155)
Q Consensus 6 ~l~l~~~-~~~~~~~~~~~~~l~~l~~l~l~~-n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 83 (155)
.++++++ .++ .+|. +. .+++|+.|++++ |.+++..+..|..+++|+.|++++|.+....+..|..+++|+.|+++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4678887 888 7888 55 788899999986 88886666778889999999999999886667788889999999999
Q ss_pred cccccccCchhhhCCCCCceEEeeCccccc
Q 036127 84 YNKLHGEIPHEIANLLNLEDLVLGMNILVG 113 (155)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 113 (155)
+|.+++..+..+..++ |+.|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9998854444444444 8999999888764
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.47 E-value=2.8e-13 Score=93.41 Aligned_cols=103 Identities=19% Similarity=0.237 Sum_probs=64.2
Q ss_pred EEEccCc-cccccCCccccCCCCCcEEEccc-CcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeC
Q 036127 31 ALFLDKN-MFHGKIPSALSKCKQLQQLNLQF-NNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGM 108 (155)
Q Consensus 31 ~l~l~~n-~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 108 (155)
.++.+++ .++ .+|. +..+++|+.|++++ |.+....+..|..+++|+.|++++|.+++..|..+..+++|+.|++++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455665 565 4555 66666677777764 666644445566666677777777766655556666666777777777
Q ss_pred ccccccCCccccCCCCCcEEEccCCccc
Q 036127 109 NILVGVFPAAIFNMSTLKVLMLINNSLS 136 (155)
Q Consensus 109 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 136 (155)
|++++..+..+..++ |+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 766664444444444 666776666664
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.41 E-value=2.5e-14 Score=104.72 Aligned_cols=105 Identities=17% Similarity=0.187 Sum_probs=57.6
Q ss_pred cCCCCCcEEEcccCc--CCCCcchhhh-CCCcccEEEeeccccccc-CchhhhCCCCCceEEeeCcccccc-CCccccCC
Q 036127 48 SKCKQLQQLNLQFNN--LSGAIPKEIG-NLTMLKGIYLEYNKLHGE-IPHEIANLLNLEDLVLGMNILVGV-FPAAIFNM 122 (155)
Q Consensus 48 ~~~~~L~~l~l~~~~--~~~~~~~~~~-~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~ 122 (155)
..+++|+.|+++.+. +.......+. .+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++. ++..+..+
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l 512 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL 512 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc
Confidence 345556666654322 2222222222 356677777777766542 233445667777777777776543 23334556
Q ss_pred CCCcEEEccCCcccCCCCcccccCCCccce
Q 036127 123 STLKVLMLINNSLSGSLPSRIDLSLPTVEV 152 (155)
Q Consensus 123 ~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~ 152 (155)
++|+.+++++|.+++..-..+...+|.+.+
T Consensus 513 ~~L~~L~ls~n~it~~~~~~l~~~~p~l~~ 542 (592)
T 3ogk_B 513 PSLRYLWVQGYRASMTGQDLMQMARPYWNI 542 (592)
T ss_dssp SSCCEEEEESCBCCTTCTTGGGGCCTTEEE
T ss_pred CccCeeECcCCcCCHHHHHHHHHhCCCcEE
Confidence 777777777777764433334345565543
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.40 E-value=1.8e-13 Score=100.27 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=18.2
Q ss_pred CccccCCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127 116 PAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 116 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 154 (155)
|..+..+++|++|++++|.+++.....+...+++|++|+
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence 333444555666666655544222222224455555544
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=3.2e-14 Score=99.08 Aligned_cols=86 Identities=23% Similarity=0.203 Sum_probs=37.2
Q ss_pred CCCcEEEcccCcCCCC----cchhhhCCCcccEEEeecccccccC----chhhhCCCCCceEEeeCcccccc----CCcc
Q 036127 51 KQLQQLNLQFNNLSGA----IPKEIGNLTMLKGIYLEYNKLHGEI----PHEIANLLNLEDLVLGMNILVGV----FPAA 118 (155)
Q Consensus 51 ~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~----~~~~ 118 (155)
++|+.|++++|.++.. .+..+...++|+.|++++|.+++.. +..+...++|+.|++++|.++.. +...
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 4455555555544321 1122234445555555555543221 22333444555555555554432 1122
Q ss_pred ccCCCCCcEEEccCCccc
Q 036127 119 IFNMSTLKVLMLINNSLS 136 (155)
Q Consensus 119 ~~~~~~L~~l~l~~n~~~ 136 (155)
+...++|+++++++|.++
T Consensus 235 L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 235 AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHCSSCCEEECTTSSCC
T ss_pred HHhCCCCCEEeccCCCCC
Confidence 233445555555555554
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=1.4e-14 Score=100.96 Aligned_cols=154 Identities=19% Similarity=0.168 Sum_probs=109.5
Q ss_pred CCccEEEccCCcccccCCch----hhcCCCCccEEEccCccccccCCccc-cCCCCCcEEEcccCcCCCCcchhh-----
Q 036127 2 SSISDIRLTNNRLSGELPKN----IGSYLPYLKALFLDKNMFHGKIPSAL-SKCKQLQQLNLQFNNLSGAIPKEI----- 71 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~----~~~~l~~l~~l~l~~n~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~~~~~----- 71 (155)
++++.+++++|.+++.-... +....++++.|++++|.++......+ ..+.+|+.|++++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 56899999999987422222 22223689999999999874333332 235689999999999874433333
Q ss_pred hCCCcccEEEeeccccccc----CchhhhCCCCCceEEeeCcccccc----CCccccCCCCCcEEEccCCcccCCCCccc
Q 036127 72 GNLTMLKGIYLEYNKLHGE----IPHEIANLLNLEDLVLGMNILVGV----FPAAIFNMSTLKVLMLINNSLSGSLPSRI 143 (155)
Q Consensus 72 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 143 (155)
...++|+.|++++|.++.. ++..+...++|++|++++|.+++. +...+...++|+.|++++|.+++.....+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2467899999999998643 344557789999999999998753 24556777899999999999984222222
Q ss_pred c---cCCCccceecC
Q 036127 144 D---LSLPTVEVLDC 155 (155)
Q Consensus 144 ~---~~~~~L~~l~l 155 (155)
. ...++|++||+
T Consensus 232 ~~~L~~~~~L~~L~L 246 (372)
T 3un9_A 232 ARAAREHPSLELLHL 246 (372)
T ss_dssp HHHHHHCSSCCEEEC
T ss_pred HHHHHhCCCCCEEec
Confidence 1 45688888875
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.33 E-value=1.5e-11 Score=86.42 Aligned_cols=145 Identities=13% Similarity=0.119 Sum_probs=75.0
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEE
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGI 80 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 80 (155)
|.+|+.+++..|.++ .++...+ ..++++.+.+..+ ++.....+|..+.+|+.+.+..+ +.......|.. .+|+.+
T Consensus 179 c~~L~~l~l~~n~l~-~I~~~aF-~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i 253 (401)
T 4fdw_A 179 CYNLKKADLSKTKIT-KLPASTF-VYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTV 253 (401)
T ss_dssp CTTCCEEECTTSCCS-EECTTTT-TTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred cccCCeeecCCCcce-EechhhE-eecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEE
Confidence 345666666666666 5565555 3456666666533 33344455666666776666553 22222333433 445555
Q ss_pred EeecccccccCchhhhCCCCCceEEeeCcccc-----ccCCccccCCCCCcEEEccCCcccCCCCcccccCCCcccee
Q 036127 81 YLEYNKLHGEIPHEIANLLNLEDLVLGMNILV-----GVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVL 153 (155)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l 153 (155)
.+. +.++......+..|++|+.+.+.++.+. ...+.+|.++++|+.+.+. +.++ .++...|.++++|+.+
T Consensus 254 ~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~-~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 254 KLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR-ILGQGLLGGNRKVTQL 328 (401)
T ss_dssp EEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC-EECTTTTTTCCSCCEE
T ss_pred EeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE-EEhhhhhcCCCCccEE
Confidence 553 2333334455556666666666555433 2333455555566666555 2344 4444444555555544
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.24 E-value=4e-13 Score=98.37 Aligned_cols=39 Identities=10% Similarity=0.029 Sum_probs=16.7
Q ss_pred CCCCceEEeeCccccccCCccc-cCCCCCcEEEccCCccc
Q 036127 98 LLNLEDLVLGMNILVGVFPAAI-FNMSTLKVLMLINNSLS 136 (155)
Q Consensus 98 ~~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~n~~~ 136 (155)
+++|+.+++++|.+++.....+ ..+++|+.+++++|.++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 4444444444444433222222 33444555555555443
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.22 E-value=6.8e-12 Score=91.89 Aligned_cols=34 Identities=18% Similarity=0.068 Sum_probs=17.4
Q ss_pred CCCCCcEEEccCCcccCCCCcccccCCCccceec
Q 036127 121 NMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLD 154 (155)
Q Consensus 121 ~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~ 154 (155)
.+++|+.+++++|.+++.....+...+++|+.|+
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~ 320 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLW 320 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEe
Confidence 3456666666666654322222224555555554
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.19 E-value=2.2e-10 Score=80.60 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=73.3
Q ss_pred CCccEEEccCccccccCCccccCCCCCcEEEcccCcCC-----CCcchhhhCCCcccEEEeecccccccCchhhhCCCCC
Q 036127 27 PYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLS-----GAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNL 101 (155)
Q Consensus 27 ~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 101 (155)
++|+.+.+.+ .++.....+|..|.+|+.+.+.++... ......|..+++|+.+.+. +.++......+..|.+|
T Consensus 248 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC
T ss_pred CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc
Confidence 3444444422 233233455667777777777665543 2334566677777777776 34554555667777778
Q ss_pred ceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCC-cccee
Q 036127 102 EDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLP-TVEVL 153 (155)
Q Consensus 102 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~-~L~~l 153 (155)
+.+.+..+ ++.....+|.++ +|+.+.+.+|... .++...|.+++ ++..+
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l 375 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVI 375 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEE
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEE
Confidence 87777544 656555677777 7888888887776 55544445553 34333
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.96 E-value=9e-10 Score=76.44 Aligned_cols=150 Identities=12% Similarity=0.081 Sum_probs=89.8
Q ss_pred CCccEEEccCCccc---------ccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhh
Q 036127 2 SSISDIRLTNNRLS---------GELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIG 72 (155)
Q Consensus 2 ~~l~~l~l~~~~~~---------~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 72 (155)
++|+.|.+...... +.+.. +...+|+|+.|.++++.-. ..+. + .+++|+.|++..+.+.......+.
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHH-HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 57888877554221 01222 3336789999999887411 2222 3 378899999988876533333333
Q ss_pred --CCCcccEEEeec--cccccc-----Cchhh--hCCCCCceEEeeCccccccCCccc---cCCCCCcEEEccCCcccCC
Q 036127 73 --NLTMLKGIYLEY--NKLHGE-----IPHEI--ANLLNLEDLVLGMNILVGVFPAAI---FNMSTLKVLMLINNSLSGS 138 (155)
Q Consensus 73 --~~~~L~~L~l~~--~~~~~~-----~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~L~~l~l~~n~~~~~ 138 (155)
.+++|+.|+++. +...+. +...+ ..+++|++|++.+|.+....+..+ ..+++|++|+++.|.+.+.
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 678899888853 211111 11122 246889999998888765332222 2467899999988888743
Q ss_pred CCcccc---cCCCccceecC
Q 036127 139 LPSRID---LSLPTVEVLDC 155 (155)
Q Consensus 139 ~~~~~~---~~~~~L~~l~l 155 (155)
....+. ..+++|+.|++
T Consensus 295 G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEEC
T ss_pred HHHHHHhhcccCCcceEEEC
Confidence 322221 34677777764
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.80 E-value=1.5e-09 Score=68.51 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=83.1
Q ss_pred CCCCccEEEccCc-ccccc----CCccccCCCCCcEEEcccCcCCCCc----chhhhCCCcccEEEeeccccccc----C
Q 036127 25 YLPYLKALFLDKN-MFHGK----IPSALSKCKQLQQLNLQFNNLSGAI----PKEIGNLTMLKGIYLEYNKLHGE----I 91 (155)
Q Consensus 25 ~l~~l~~l~l~~n-~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~ 91 (155)
..+.+++|++++| .+... +...+...++|+.|++++|.+.... ...+...++|+.|++++|.+... +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 5788999999998 77632 2344566788999999999987432 23344567899999999988754 3
Q ss_pred chhhhCCCCCceEEe--eCcccccc----CCccccCCCCCcEEEccCCccc
Q 036127 92 PHEIANLLNLEDLVL--GMNILVGV----FPAAIFNMSTLKVLMLINNSLS 136 (155)
Q Consensus 92 ~~~~~~~~~L~~l~l--~~~~~~~~----~~~~~~~~~~L~~l~l~~n~~~ 136 (155)
...+...+.|+++++ ++|.++.. +...+...++|+.+++++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 455666788999999 88888753 2344556688999999999875
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=9e-09 Score=71.45 Aligned_cols=132 Identities=15% Similarity=0.140 Sum_probs=88.7
Q ss_pred CCCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCcccc--CCCCCcEEEcccC--cC-CCC----cchhh
Q 036127 1 MSSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALS--KCKQLQQLNLQFN--NL-SGA----IPKEI 71 (155)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~--~~~~L~~l~l~~~--~~-~~~----~~~~~ 71 (155)
+++|+.|.++++.-. .++. . .+++|+.|++..+.+.......+. .+++|+.|++..+ .. ... ....+
T Consensus 171 ~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp CTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred CCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 468999999887322 3443 2 378999999998877633333333 6789999998531 11 110 11112
Q ss_pred --hCCCcccEEEeecccccccCchhhh---CCCCCceEEeeCccccccC----CccccCCCCCcEEEccCCccc
Q 036127 72 --GNLTMLKGIYLEYNKLHGEIPHEIA---NLLNLEDLVLGMNILVGVF----PAAIFNMSTLKVLMLINNSLS 136 (155)
Q Consensus 72 --~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~n~~~ 136 (155)
..+++|+.|++.+|.+.+..+..+. .+++|++|+++.|.+++.. +..+..+++|+.+++++|.++
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 2478999999999887644443433 4678999999999887632 223345689999999999887
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.74 E-value=1.1e-08 Score=68.11 Aligned_cols=81 Identities=27% Similarity=0.268 Sum_probs=56.6
Q ss_pred CCCcccEEEeecccccc--cCchhhhCCCCCceEEeeCccccccC-CccccCCCCCcEEEccCCcccCCCCc------cc
Q 036127 73 NLTMLKGIYLEYNKLHG--EIPHEIANLLNLEDLVLGMNILVGVF-PAAIFNMSTLKVLMLINNSLSGSLPS------RI 143 (155)
Q Consensus 73 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~------~~ 143 (155)
.+++|+.|++++|.+++ .++..+..+++|+.|++++|.+++.. ...+..+ +|+.|++.+|++++..|. .+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 46788888888888875 33456667888888888888887641 1223333 788888888888765552 23
Q ss_pred ccCCCccceec
Q 036127 144 DLSLPTVEVLD 154 (155)
Q Consensus 144 ~~~~~~L~~l~ 154 (155)
...+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 36788888876
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.69 E-value=1.3e-08 Score=63.37 Aligned_cols=86 Identities=12% Similarity=0.084 Sum_probs=57.0
Q ss_pred CCCcEEEcccCcCCCCcchhhhCCCcccEEEeeccc-ccccCchhhhCC----CCCceEEeeCcc-ccccCCccccCCCC
Q 036127 51 KQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNK-LHGEIPHEIANL----LNLEDLVLGMNI-LVGVFPAAIFNMST 124 (155)
Q Consensus 51 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~l~l~~~~-~~~~~~~~~~~~~~ 124 (155)
..|+.++++++.++...-..+..+++|+.|++++|. +++..-..+..+ ++|+.|++++|. +++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 457777777777765555556677788888887774 554444444443 367888888774 66543445667788
Q ss_pred CcEEEccCCc-cc
Q 036127 125 LKVLMLINNS-LS 136 (155)
Q Consensus 125 L~~l~l~~n~-~~ 136 (155)
|++|+++++. ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 8888888774 44
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.68 E-value=8e-09 Score=65.19 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=82.8
Q ss_pred CCccEEEccCC-ccccc----CCchhhcCCCCccEEEccCcccccc----CCccccCCCCCcEEEcccCcCCCCc----c
Q 036127 2 SSISDIRLTNN-RLSGE----LPKNIGSYLPYLKALFLDKNMFHGK----IPSALSKCKQLQQLNLQFNNLSGAI----P 68 (155)
Q Consensus 2 ~~l~~l~l~~~-~~~~~----~~~~~~~~l~~l~~l~l~~n~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~ 68 (155)
++|+.|++++| .+.+. +...+. ..+++++|++++|.+... +...+...++|+.|++++|.+.... .
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 57899999999 88742 223333 568999999999998742 2334556688999999999987432 3
Q ss_pred hhhhCCCcccEEEe--ecccccccC----chhhhCCCCCceEEeeCccccc
Q 036127 69 KEIGNLTMLKGIYL--EYNKLHGEI----PHEIANLLNLEDLVLGMNILVG 113 (155)
Q Consensus 69 ~~~~~~~~L~~L~l--~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~ 113 (155)
..+...++|+.|++ ++|.+.... ...+...++|+.+++++|.+..
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 45566788999999 889887543 3445566899999999998764
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.65 E-value=4.2e-09 Score=70.01 Aligned_cols=80 Identities=29% Similarity=0.278 Sum_probs=58.6
Q ss_pred cCCCCCcEEEcccCcCCCC--cchhhhCCCcccEEEeecccccccCchhhhCCC--CCceEEeeCccccccCC-------
Q 036127 48 SKCKQLQQLNLQFNNLSGA--IPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLL--NLEDLVLGMNILVGVFP------- 116 (155)
Q Consensus 48 ~~~~~L~~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~~~~------- 116 (155)
..+++|+.|++++|.+... .+..+..+++|+.|++++|.+++. ..+..+. +|+.|++.+|.+++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 3567899999999988752 345667788999999999988753 2333333 88999999998876444
Q ss_pred ccccCCCCCcEEE
Q 036127 117 AAIFNMSTLKVLM 129 (155)
Q Consensus 117 ~~~~~~~~L~~l~ 129 (155)
..+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2466788888876
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.63 E-value=4.7e-07 Score=63.47 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=53.2
Q ss_pred ccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCc
Q 036127 47 LSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLK 126 (155)
Q Consensus 47 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 126 (155)
|..+.+|+.+.+..+ +.......|..+.+|+.+++..+ ++......+..|.+|+.+.+..+ ++.....+|.+|.+|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 444555555555443 22233445556666666666532 44344555666666666666544 4444445666666666
Q ss_pred EEEccCCcccCCCCcccccCCCcccee
Q 036127 127 VLMLINNSLSGSLPSRIDLSLPTVEVL 153 (155)
Q Consensus 127 ~l~l~~n~~~~~~~~~~~~~~~~L~~l 153 (155)
.+.+..+ ++ .+...+ .++++|+.+
T Consensus 370 ~i~lp~~-~~-~~~~~F-~~c~~L~~I 393 (394)
T 4fs7_A 370 KVELPKR-LE-QYRYDF-EDTTKFKWI 393 (394)
T ss_dssp EEEEEGG-GG-GGGGGB-CTTCEEEEE
T ss_pred EEEECCC-CE-Ehhhee-cCCCCCcEE
Confidence 6666543 22 222223 566666543
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.62 E-value=3.7e-08 Score=61.37 Aligned_cols=87 Identities=8% Similarity=0.002 Sum_probs=69.0
Q ss_pred CCccEEEccCccccccCCccccCCCCCcEEEcccCc-CCCCcchhhhCC----CcccEEEeeccc-ccccCchhhhCCCC
Q 036127 27 PYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNN-LSGAIPKEIGNL----TMLKGIYLEYNK-LHGEIPHEIANLLN 100 (155)
Q Consensus 27 ~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~~~~~~~ 100 (155)
..|+.|+++++.++...-..+..+++|+.|++++|. +++..-..+... ++|+.|++++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 369999999999886666667889999999999996 654444556554 479999999985 77666667788999
Q ss_pred CceEEeeCcc-ccc
Q 036127 101 LEDLVLGMNI-LVG 113 (155)
Q Consensus 101 L~~l~l~~~~-~~~ 113 (155)
|+.|++.+|. +++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 9999999985 443
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.59 E-value=6.6e-07 Score=62.29 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=65.5
Q ss_pred CCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhC
Q 036127 18 LPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIAN 97 (155)
Q Consensus 18 ~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 97 (155)
++...+..+..|+.+.+..+ ++.....+|..+.+++.+.+..+ +.......|..+.+|+.+.+..+.++......+..
T Consensus 231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~ 308 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD 308 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC
Confidence 44444445566666666554 33233445666666777666543 32233445666777777777666665455566667
Q ss_pred CCCCceEEeeCccccccCCccccCCCCCcEEEccC
Q 036127 98 LLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLIN 132 (155)
Q Consensus 98 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 132 (155)
|.+|+.+.+..+ ++.....+|.+|.+|+.+.+..
T Consensus 309 c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 309 CVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred CCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 777777776543 4444445677777777666643
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.58 E-value=7.6e-07 Score=62.40 Aligned_cols=143 Identities=11% Similarity=0.062 Sum_probs=108.3
Q ss_pred CccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEe
Q 036127 3 SISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYL 82 (155)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 82 (155)
+++.+.+... .+ .+....+..+..++.+.+..+... .....|..+..++.+......+. ...|..+.+|+.+.+
T Consensus 231 ~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 231 GVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKL 304 (394)
T ss_dssp CCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEE
T ss_pred CCceEEECCC-ce-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccc
Confidence 4666666543 33 566666667889999999887655 55667888999999888765433 346778889999998
Q ss_pred ecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 83 EYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
..+ ++......+..|.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++ .++...|.++++|+.+++
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVEL 373 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEE
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEE
Confidence 754 55466778889999999999654 66656678999999999999766 66 677766689999987753
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.52 E-value=3e-06 Score=58.94 Aligned_cols=129 Identities=15% Similarity=0.086 Sum_probs=94.8
Q ss_pred hhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhhCCCCC
Q 036127 22 IGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNL 101 (155)
Q Consensus 22 ~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 101 (155)
.+....+++.+.+..+--. ....++..+..|+.+.+..+ +.......|..+.+++.+.+..+ ++......+..|.+|
T Consensus 212 ~f~~~~~l~~i~~~~~~~~-i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSGVTT-LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTTCCE-ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccceeE-EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3335567777777655322 44556778889999998765 44345567888889999988654 543555678889999
Q ss_pred ceEEeeCccccccCCccccCCCCCcEEEccCCcccCCCCcccccCCCccceecC
Q 036127 102 EDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSLSGSLPSRIDLSLPTVEVLDC 155 (155)
Q Consensus 102 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l 155 (155)
+.+.+.++.++.....+|.++.+|+.+.+..+ ++ .+....|.++++|+.+.+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEE
Confidence 99999888888766789999999999999654 66 666666688888877653
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.43 E-value=1.9e-06 Score=60.42 Aligned_cols=115 Identities=13% Similarity=0.160 Sum_probs=81.2
Q ss_pred cCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecccccccCchhhh
Q 036127 17 ELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIA 96 (155)
Q Consensus 17 ~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 96 (155)
.+...++..+..++.+.+..+... ....+|..+..|+.+.+.. .+.......|..+.+|+.+.+..+ ++......+.
T Consensus 255 ~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~ 331 (394)
T 4gt6_A 255 RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFA 331 (394)
T ss_dssp EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred EcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence 344556666778888888766544 4556677888888888864 343344567888888888888753 5545567788
Q ss_pred CCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcc
Q 036127 97 NLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL 135 (155)
Q Consensus 97 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (155)
.|.+|+.+.+..+ ++.....+|.+|.+|+.+.+.++..
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 8888888888654 6665557888888888888877654
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.38 E-value=4.2e-06 Score=58.62 Aligned_cols=126 Identities=12% Similarity=0.139 Sum_probs=87.4
Q ss_pred CCccEEEccCCcccccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEE
Q 036127 2 SSISDIRLTNNRLSGELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIY 81 (155)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 81 (155)
..|+.+.+..+. + .+....+..++.|+.+.+..+ ++.....+|..|.+|+.+.+..+ +.......|.++.+|+.+.
T Consensus 265 ~~L~~i~lp~~~-~-~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 265 AYLASVKMPDSV-V-SIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp SSCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccEEeccccc-c-eecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence 456777776543 3 467777778899999999754 44355667999999999999865 4435567899999999999
Q ss_pred eecccccccCchhhhCCCCCceEEeeCccccccCCccccCCCCCcEEEccCCcc
Q 036127 82 LEYNKLHGEIPHEIANLLNLEDLVLGMNILVGVFPAAIFNMSTLKVLMLINNSL 135 (155)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 135 (155)
+..+ ++......+.+|.+|+.+.+.++.... ..+..+.+|+.+.+..+.+
T Consensus 341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 341 IPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred ECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 9754 665667889999999999998875432 3566778888888766544
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.80 E-value=6.4e-05 Score=44.50 Aligned_cols=56 Identities=20% Similarity=0.180 Sum_probs=31.7
Q ss_pred EEEccCCccc-ccCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEcccCcCC
Q 036127 6 DIRLTNNRLS-GELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQFNNLS 64 (155)
Q Consensus 6 ~l~l~~~~~~-~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~~~~~ 64 (155)
.++.+++.++ ..+|..+. ++++.|++++|.++...+..|..+++|+.|++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC---TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC---cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4556666554 24454332 35666666666666444444566666666666666553
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.37 E-value=0.00016 Score=45.85 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=67.5
Q ss_pred CCCccEEEccCc-cccc----cCCccccCCCCCcEEEcccCcCCCCc----chhhhCCCcccEEEeecccccccCc----
Q 036127 26 LPYLKALFLDKN-MFHG----KIPSALSKCKQLQQLNLQFNNLSGAI----PKEIGNLTMLKGIYLEYNKLHGEIP---- 92 (155)
Q Consensus 26 l~~l~~l~l~~n-~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~---- 92 (155)
-+.|+.|+++++ .+.. .+..++..-+.|+.|++++|.+.... ...+..-++|+.|++++|.+.....
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 457888888875 6542 22334555577888888888876322 2233345678888888888765433
Q ss_pred hhhhCCCCCceEEeeCc---ccccc----CCccccCCCCCcEEEccCCcc
Q 036127 93 HEIANLLNLEDLVLGMN---ILVGV----FPAAIFNMSTLKVLMLINNSL 135 (155)
Q Consensus 93 ~~~~~~~~L~~l~l~~~---~~~~~----~~~~~~~~~~L~~l~l~~n~~ 135 (155)
..+..-..|+.|++.++ .+... +..++..-+.|..++++.+.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 33444466888888654 33321 233455557788888876654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.20 E-value=0.00081 Score=39.69 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=41.0
Q ss_pred cEEEcccCcCC-CCcchhhhCCCcccEEEeecccccccCchhhhCCCCCceEEeeCcccc
Q 036127 54 QQLNLQFNNLS-GAIPKEIGNLTMLKGIYLEYNKLHGEIPHEIANLLNLEDLVLGMNILV 112 (155)
Q Consensus 54 ~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 112 (155)
..++-+++.++ ...|..+ ..+++.|++++|.++..-+..+..+++|+.+++.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36677777665 2344322 246899999999998555566788889999999999774
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.52 E-value=0.0025 Score=40.37 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=62.6
Q ss_pred ccCCCCCcEEEcccC-cCCCC----cchhhhCCCcccEEEeecccccccC----chhhhCCCCCceEEeeCcccccc---
Q 036127 47 LSKCKQLQQLNLQFN-NLSGA----IPKEIGNLTMLKGIYLEYNKLHGEI----PHEIANLLNLEDLVLGMNILVGV--- 114 (155)
Q Consensus 47 ~~~~~~L~~l~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~--- 114 (155)
+..-+.|+.|+++++ .+... ....+..-++|+.|++++|.+.... ...+..-..|+.|++..|.++..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344578999999985 76532 2234555678999999999987543 34445567899999999999763
Q ss_pred -CCccccCCCCCcEEEccCC
Q 036127 115 -FPAAIFNMSTLKVLMLINN 133 (155)
Q Consensus 115 -~~~~~~~~~~L~~l~l~~n 133 (155)
+..++..-+.|+.|+++++
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 2244556677999999865
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=89.59 E-value=1.1 Score=24.85 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=20.6
Q ss_pred cCCchhhcCCCCccEEEccCccccccCCccccCCCCCcEEEccc
Q 036127 17 ELPKNIGSYLPYLKALFLDKNMFHGKIPSALSKCKQLQQLNLQF 60 (155)
Q Consensus 17 ~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~l~l~~ 60 (155)
.+....|..+.+|+.+.+..+--. ....+|..|.+|+.+.+.+
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~v~~-Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPNIGL-LYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTTSSC-CCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCchhe-EcHHHHhccCCccEEEEcC
Confidence 444445545555555555444221 3334455555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=84.53 E-value=1.9 Score=23.87 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=27.9
Q ss_pred ccccCCccccCCCCCcEEEcccCcCCCCcchhhhCCCcccEEEeecc
Q 036127 39 FHGKIPSALSKCKQLQQLNLQFNNLSGAIPKEIGNLTMLKGIYLEYN 85 (155)
Q Consensus 39 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 85 (155)
++..-..+|.+|.+|+.+.+..+- +......|..+.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 333344567777777777776542 3244556777777777766543
Done!