BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036130
         (205 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
 pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
 pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
           Paraoxon
 pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
           Paraoxon
          Length = 380

 Score = 27.7 bits (60), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 20/46 (43%)

Query: 35  IVHPLCPVFTVSSFTVSNLTLSNNNDSRIKADYHLVFSMKNPNKKV 80
           IV  L P+F V    V   T    ++  +  D  L F+ K+P   V
Sbjct: 111 IVSQLVPIFDVDGNEVEPFTSKQTDEKHLIIDDFLAFTFKDPETGV 156


>pdb|2KHE|A Chain A, Solution Structure Of The Bacterial Toxin Rele From
           Thermus Thermophilus Hb8
          Length = 89

 Score = 27.3 bits (59), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 113 MSQKNWSPEFPRDFGEPLHGREFNEIGKDWSKRVVSFDVKMKIEAR 158
           + ++  + E PR  GEPL G    E+G+ W  RV  + +   I+ R
Sbjct: 30  LRERVATLEDPRSLGEPLRG---PELGRFWKYRVGDYRLICHIQDR 72


>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
           Ehrho1-Gtpgammas
          Length = 188

 Score = 27.3 bits (59), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 69  LVFSMKN-PNKKVPLVINNFEILLLYKNDTVLIQTWIT 105
           L FS    P   VP V  NF  ++ YKN+  ++  W T
Sbjct: 40  LAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 77


>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
 pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
 pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
           Magnesium
 pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
           Magnesium
          Length = 194

 Score = 27.3 bits (59), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 76  PNKKVPLVINNFEILLLYKNDTVLIQTWIT 105
           P   VP V  NF  ++ YKN+  ++  W T
Sbjct: 49  PTAYVPTVFENFSHVMKYKNEEFILHLWDT 78


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,908,551
Number of Sequences: 62578
Number of extensions: 214527
Number of successful extensions: 364
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 5
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)