BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036130
         (205 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8VZ13|Y1816_ARATH Uncharacterized protein At1g08160 OS=Arabidopsis thaliana
           GN=At1g08160 PE=2 SV=1
          Length = 221

 Score = 42.7 bits (99), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 8/152 (5%)

Query: 31  IAWLIVHPLCPVFTVSSFTVSNLTLSNNNDSRIKADYHLVFSMKNPNKKVPLVINNFEIL 90
           I +L + P   ++TV + +V    + NN+D  I A +  V    NP K V +  ++  I 
Sbjct: 57  ITYLTLRPKRLIYTVEAASVQEFAIGNNDD-HINAKFSYVIKSYNPEKHVSVRYHSMRIS 115

Query: 91  LLYKNDTVLIQTWITEAVSLEKMSQKNWSPEFPRDFGEPLHGREFNEIGKDWSKRVVSFD 150
             + N +V  +      +S  K   KN +    +     +   +FN       K   + +
Sbjct: 116 TAHHNQSVAHKN-----ISPFKQRPKNETRIETQLVSHNVALSKFNARDLRAEKSKGTIE 170

Query: 151 VKMKIEARFTYGIWL--SKRRIMKVSCINLVV 180
           +++ I AR +Y  W+  S+RR +K  C  +++
Sbjct: 171 MEVYITARVSYKTWIFRSRRRTLKAVCTPVMI 202


>sp|P39723|SPC72_YEAST Spindle pole component SPC72 OS=Saccharomyces cerevisiae (strain
           ATCC 204508 / S288c) GN=SPC72 PE=1 SV=2
          Length = 622

 Score = 32.3 bits (72), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 47  SFTVSNLTLSNNNDSRIKADYHLVFSMKNPNKKVPLVINNFE-----ILLLYKNDTVLIQ 101
           S  + +L L  N+ S I+   HL+  +K   +   ++INN E     I+ + +N+ VL +
Sbjct: 336 SHLLDSLELEENSSSVIEKQDHLISQLKEKIESQSVLINNLEKLKEDIIKMKQNEKVLTK 395

Query: 102 TWITEAVSLEKMSQKNW 118
              T+   + K+ + NW
Sbjct: 396 ELETQ-TKINKLKENNW 411


>sp|P62287|ASPM_COLGU Abnormal spindle-like microcephaly-associated protein homolog
            OS=Colobus guereza GN=ASPM PE=3 SV=1
          Length = 3477

 Score = 31.6 bits (70), Expect = 3.6,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 27/134 (20%)

Query: 59   NDSRIKADYHLVFSMKNPNKKVPLVINNFEILLLYKNDTVLIQTWITEAVSLEKMSQKNW 118
            N  RI+  Y L  ++KN NK+V              N  + IQ W    +  +K  QK +
Sbjct: 3120 NALRIQRAYKLYLAVKNANKQV--------------NSVICIQRWFRARLQQKKFIQKYY 3165

Query: 119  SPEFPRDFGEPLHGREFNEIGKDWSKRVVSFDVKMKIEARFTYGI-----------WLSK 167
            S E     G+    +  N       K V  F ++ K E +FT GI           W  K
Sbjct: 3166 SIEKIEHEGQECLSQR-NRAASVIQKAVRHFVLRKKQE-KFTSGIIKIQALWRGYSWRKK 3223

Query: 168  RRIMKVSCINLVVE 181
                K+  I L ++
Sbjct: 3224 NDCTKIKAIRLSLQ 3237


>sp|Q9SZ95|FB224_ARATH Putative F-box protein At4g09790 OS=Arabidopsis thaliana
           GN=At4g09790 PE=4 SV=1
          Length = 351

 Score = 30.8 bits (68), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 21/94 (22%)

Query: 39  LCPVFTVSSFTVSNLTLSNNNDSRIKADYHLVFSMKNPNKKVPLVINNFEILLLYKNDTV 98
           +C  FT   F + ++ L           Y    +M+ P ++  L +       LY+ DT 
Sbjct: 184 ICFDFTSERFNLDHVCL-----------YRFTLTMERPVREEQLAV-------LYQQDTC 225

Query: 99  LIQTWITEAVSLEKMSQKNWSPEFPRDFGEPLHG 132
           L++ W+T  +  + +S   WS  F     EPL G
Sbjct: 226 LMEIWVTNKIEPDVVS---WSKVFLAVDMEPLTG 256


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.139    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,533,933
Number of Sequences: 539616
Number of extensions: 2882634
Number of successful extensions: 8791
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8788
Number of HSP's gapped (non-prelim): 8
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)