Query 036130
Match_columns 205
No_of_seqs 126 out of 777
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 09:44:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 3.3E-35 7.1E-40 236.9 24.2 184 3-204 32-217 (219)
2 PF03168 LEA_2: Late embryogen 99.5 1.9E-13 4.1E-18 96.7 9.6 98 70-176 1-100 (101)
3 smart00769 WHy Water Stress an 98.5 2.8E-06 6E-11 60.3 10.9 62 62-125 12-73 (100)
4 PF07092 DUF1356: Protein of u 98.1 0.00055 1.2E-08 55.6 16.9 119 36-159 96-216 (238)
5 PF12751 Vac7: Vacuolar segreg 97.6 0.00036 7.7E-09 60.2 9.1 88 3-101 295-382 (387)
6 COG5608 LEA14-like dessication 97.4 0.018 4E-07 43.5 14.6 104 39-156 31-135 (161)
7 PRK13150 cytochrome c-type bio 90.3 4.7 0.0001 31.0 9.5 68 66-141 77-146 (159)
8 COG2332 CcmE Cytochrome c-type 87.1 9.1 0.0002 29.0 8.9 67 66-140 71-139 (153)
9 PLN03160 uncharacterized prote 82.1 25 0.00054 28.4 13.1 46 2-50 34-81 (219)
10 TIGR02588 conserved hypothetic 82.0 3.4 7.5E-05 30.2 4.7 50 20-78 11-62 (122)
11 PRK13159 cytochrome c-type bio 71.7 43 0.00093 25.6 8.4 64 69-141 74-139 (155)
12 PRK13254 cytochrome c-type bio 66.3 55 0.0012 24.8 9.1 38 67-104 71-108 (148)
13 COG4698 Uncharacterized protei 64.0 5.2 0.00011 31.3 2.0 46 10-57 10-58 (197)
14 PHA03054 IMV membrane protein; 63.2 4.9 0.00011 26.3 1.5 26 8-33 43-68 (72)
15 PF14155 DUF4307: Domain of un 62.1 56 0.0012 23.4 7.9 29 93-125 72-101 (112)
16 PF03100 CcmE: CcmE; InterPro 60.8 28 0.00061 25.6 5.4 18 69-86 73-90 (131)
17 PRK10893 lipopolysaccharide ex 58.0 54 0.0012 25.9 6.9 30 37-70 37-66 (192)
18 KOG3950 Gamma/delta sarcoglyca 55.2 43 0.00094 27.6 5.9 23 62-84 105-127 (292)
19 PHA02844 putative transmembran 53.3 11 0.00024 25.0 1.9 24 11-34 46-69 (75)
20 TIGR00996 Mtu_fam_mce virulenc 52.0 77 0.0017 26.3 7.3 12 90-102 50-61 (291)
21 PF10907 DUF2749: Protein of u 49.9 26 0.00057 22.6 3.1 16 24-39 13-28 (66)
22 PF15012 DUF4519: Domain of un 49.2 19 0.00042 22.5 2.4 14 26-39 43-56 (56)
23 PF12505 DUF3712: Protein of u 48.2 45 0.00097 24.1 4.7 26 64-90 99-124 (125)
24 PF05170 AsmA: AsmA family; I 47.9 1.7E+02 0.0036 27.1 9.5 67 82-156 468-534 (604)
25 PF06024 DUF912: Nucleopolyhed 47.6 29 0.00062 24.4 3.4 23 14-36 64-86 (101)
26 PF12505 DUF3712: Protein of u 46.9 1.1E+02 0.0023 22.1 7.6 63 99-169 3-67 (125)
27 COG1463 Ttg2C ABC-type transpo 45.7 82 0.0018 27.3 6.7 52 90-146 58-109 (359)
28 PHA02650 hypothetical protein; 45.3 14 0.00031 24.8 1.5 25 10-34 46-70 (81)
29 PF11906 DUF3426: Protein of u 45.1 1.2E+02 0.0027 22.3 7.4 60 43-106 48-108 (149)
30 PRK13183 psbN photosystem II r 43.3 36 0.00079 20.4 2.8 24 16-39 10-33 (46)
31 PF06837 Fijivirus_P9-2: Fijiv 42.6 11 0.00024 29.6 0.7 23 5-27 107-129 (214)
32 PRK05529 cell division protein 42.2 41 0.00088 27.8 4.1 46 40-86 58-128 (255)
33 PRK13165 cytochrome c-type bio 41.7 1.6E+02 0.0035 22.6 11.5 65 68-140 79-145 (160)
34 CHL00020 psbN photosystem II p 40.9 42 0.0009 19.9 2.8 24 16-39 7-30 (43)
35 PF05781 MRVI1: MRVI1 protein; 40.7 24 0.00053 32.3 2.7 32 7-38 473-504 (538)
36 smart00831 Cation_ATPase_N Cat 38.8 40 0.00088 20.9 2.9 29 2-30 32-60 (64)
37 PF09604 Potass_KdpF: F subuni 37.5 9.1 0.0002 19.9 -0.3 20 21-40 5-24 (25)
38 PF04478 Mid2: Mid2 like cell 37.3 26 0.00056 26.7 2.0 22 22-43 61-82 (154)
39 PRK06531 yajC preprotein trans 36.5 15 0.00032 26.6 0.5 10 31-40 15-24 (113)
40 PF11395 DUF2873: Protein of u 34.9 19 0.0004 20.6 0.6 14 24-37 20-33 (43)
41 PRK07021 fliL flagellar basal 34.0 85 0.0019 23.9 4.5 17 81-97 77-93 (162)
42 PF14927 Neurensin: Neurensin 34.0 47 0.001 25.0 2.9 33 9-43 41-74 (140)
43 KOG3927 Na+/K+ ATPase, beta su 34.0 25 0.00055 29.9 1.6 21 35-56 72-92 (300)
44 PF02468 PsbN: Photosystem II 33.7 31 0.00066 20.4 1.5 23 17-39 8-30 (43)
45 PRK07718 fliL flagellar basal 33.7 60 0.0013 24.2 3.5 15 83-97 63-77 (142)
46 PF09624 DUF2393: Protein of u 33.2 2E+02 0.0044 21.3 7.9 59 28-97 33-93 (149)
47 PF06072 Herpes_US9: Alphaherp 32.6 50 0.0011 21.0 2.4 12 23-34 48-59 (60)
48 PF06092 DUF943: Enterobacteri 32.3 25 0.00054 27.0 1.2 18 22-39 12-29 (157)
49 COG1589 FtsQ Cell division sep 31.9 58 0.0013 27.0 3.4 32 22-53 39-70 (269)
50 COG1580 FliL Flagellar basal b 30.6 1.6E+02 0.0036 22.5 5.5 24 13-36 19-42 (159)
51 PF14283 DUF4366: Domain of un 30.2 61 0.0013 26.2 3.2 19 25-43 172-190 (218)
52 PRK14759 potassium-transportin 29.7 16 0.00035 19.7 -0.2 20 21-40 9-28 (29)
53 PF05473 Herpes_UL45: UL45 pro 28.4 60 0.0013 25.9 2.8 16 4-19 43-58 (200)
54 TIGR02115 potass_kdpF K+-trans 28.4 8 0.00017 20.3 -1.4 20 21-40 4-23 (26)
55 PF05478 Prominin: Prominin; 28.0 29 0.00063 33.6 1.2 28 2-29 132-159 (806)
56 PF05478 Prominin: Prominin; 27.5 51 0.0011 32.0 2.7 15 15-29 141-155 (806)
57 PF08113 CoxIIa: Cytochrome c 27.0 22 0.00047 19.8 0.1 14 21-34 11-24 (34)
58 TIGR03602 streptolysinS bacter 26.9 14 0.00031 22.4 -0.7 7 5-11 25-31 (56)
59 PF09307 MHC2-interact: CLIP, 26.8 21 0.00046 25.8 0.0 34 4-38 25-58 (114)
60 PF09911 DUF2140: Uncharacteri 26.7 1.1E+02 0.0024 24.0 4.0 28 12-41 4-31 (187)
61 PF13396 PLDc_N: Phospholipase 24.8 79 0.0017 18.3 2.3 15 25-39 32-46 (46)
62 PF00927 Transglut_C: Transglu 24.4 2.4E+02 0.0053 19.4 8.1 61 62-124 12-76 (107)
63 PF15145 DUF4577: Domain of un 22.2 69 0.0015 23.1 1.9 21 18-38 68-88 (128)
64 PF11606 AlcCBM31: Family 31 c 22.1 81 0.0018 21.6 2.1 23 74-96 4-27 (93)
65 PF05545 FixQ: Cbb3-type cytoc 21.4 26 0.00057 21.0 -0.3 8 32-39 26-33 (49)
66 PF09865 DUF2092: Predicted pe 20.6 4.5E+02 0.0098 21.1 8.7 36 61-97 35-72 (214)
67 COG5353 Uncharacterized protei 20.5 28 0.00062 26.4 -0.4 24 16-39 11-34 (161)
68 PF09677 TrbI_Ftype: Type-F co 20.5 66 0.0014 23.1 1.5 20 23-42 13-32 (111)
69 COG4736 CcoQ Cbb3-type cytochr 20.5 27 0.00057 22.3 -0.5 10 31-40 25-34 (60)
70 PF12321 DUF3634: Protein of u 20.4 33 0.0007 24.6 -0.1 16 30-45 11-28 (108)
71 PF12202 OSR1_C: Oxidative-str 20.1 1.9E+02 0.0042 16.6 3.5 18 67-85 1-18 (38)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=3.3e-35 Score=236.88 Aligned_cols=184 Identities=16% Similarity=0.242 Sum_probs=151.8
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHheeeeEEEecCCcEEEEEEEEEeeEeeCCCC--CceEEEEEEEEEEEecCCCee
Q 036130 3 ENSQCFHFVRRLITALLFLFVLISVVSWIAWLIVHPLCPVFTVSSFTVSNLTLSNNN--DSRIKADYHLVFSMKNPNKKV 80 (205)
Q Consensus 3 ~~~~c~~~~~~~~~~l~~l~~~~~i~~li~~lv~rP~~P~f~v~s~~l~~~~~~~~~--~~~l~~~~~~~l~~~NPN~~~ 80 (205)
++.+|++||+|++.++++ ++++++.++|++||||+|+|+|+++++++|+++... +..+|++++++++++|||+ +
T Consensus 32 ~r~~~~~c~~~~~a~~l~---l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~ 107 (219)
T PLN03160 32 RRRNCIKCCGCITATLLI---LATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-A 107 (219)
T ss_pred ccccceEEHHHHHHHHHH---HHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-e
Confidence 345666676666665443 345566678999999999999999999999986522 2467888999999999998 8
Q ss_pred eEEEecEEEEEEEcCeeeeeeeeeccceeecCCCeeEEEEEEeeCcCccCChhhHHHhhccccCceEEEEEEEEEEEEEE
Q 036130 81 PLVINNFEILLLYKNDTVLIQTWITEAVSLEKMSQKNWSPEFPRDFGEPLHGREFNEIGKDWSKRVVSFDVKMKIEARFT 160 (205)
Q Consensus 81 ~i~Y~~~~~~v~Y~g~~~lg~~~~~p~f~q~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~d~~~g~v~l~v~v~~~v~~k 160 (205)
+|+|+++++.++|+|+. +|.+.+ |+|+|++++++.+++++... ...+.+ ..+|.+|.++|.++|+++++.+.+.+
T Consensus 108 ~~~Y~~~~~~v~Y~g~~-vG~a~~-p~g~~~ar~T~~l~~tv~~~-~~~~~~--~~~L~~D~~~G~v~l~~~~~v~gkVk 182 (219)
T PLN03160 108 SFKYSNTTTTIYYGGTV-VGEART-PPGKAKARRTMRMNVTVDII-PDKILS--VPGLLTDISSGLLNMNSYTRIGGKVK 182 (219)
T ss_pred eEEEcCeEEEEEECCEE-EEEEEc-CCcccCCCCeEEEEEEEEEE-eceecc--chhHHHHhhCCeEEEEEEEEEEEEEE
Confidence 99999999999999999 999999 99999999999999997755 332222 25688999999999999988888889
Q ss_pred EeEEEEecEEEEEEcceEEEeecCCCCCcceeeccCCcceEEee
Q 036130 161 YGIWLSKRRIMKVSCINLVVEFLEPRGINGKLRVAGGKVCSVHL 204 (205)
Q Consensus 161 ~g~~~s~~~~~~v~C~~l~v~~~~~~~~~g~~~~~~~~~C~~~~ 204 (205)
+|++.++++..+++|+ +.|++. +.. +++.+|+.++
T Consensus 183 v~~i~k~~v~~~v~C~-v~V~~~-----~~~---i~~~~C~~~~ 217 (219)
T PLN03160 183 ILKIIKKHVVVKMNCT-MTVNIT-----SQA---IQGQKCKRHV 217 (219)
T ss_pred EEEEEEEEEEEEEEeE-EEEECC-----CCE---EeccEecccc
Confidence 9988889999999999 999874 223 4888999875
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.50 E-value=1.9e-13 Score=96.73 Aligned_cols=98 Identities=19% Similarity=0.223 Sum_probs=71.2
Q ss_pred EEEEecCCCeeeEEEecEEEEEEEcCeeeee-eeeeccceeecCCCeeEEEEEEeeCcCccCChhhHHHhhccccCceEE
Q 036130 70 VFSMKNPNKKVPLVINNFEILLLYKNDTVLI-QTWITEAVSLEKMSQKNWSPEFPRDFGEPLHGREFNEIGKDWSKRVVS 148 (205)
Q Consensus 70 ~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~~lg-~~~~~p~f~q~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~d~~~g~v~ 148 (205)
+++++|||. ++++|++++++++|+|+. +| .... ++|+|++++++.+.+.+..+ ...+ .+.+.++. +|..+
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~-v~~~~~~-~~~~i~~~~~~~v~~~v~~~-~~~l----~~~l~~~~-~~~~~ 71 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQR-VGTGGSL-PPFTIPARSSTTVPVPVSVD-YSDL----PRLLKDLL-AGRVP 71 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSE-EEEEEEC-E-EEESSSCEEEEEEEEEEE-HHHH----HHHHHHHH-HTTSC
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEE-EECcccc-CCeEECCCCcEEEEEEEEEc-HHHH----HHHHHhhh-ccccc
Confidence 689999998 999999999999999999 99 6666 99999999999999887776 3322 45555556 55667
Q ss_pred EEEEEEEEEEEEE-eEEEEecEEEEEEcc
Q 036130 149 FDVKMKIEARFTY-GIWLSKRRIMKVSCI 176 (205)
Q Consensus 149 l~v~v~~~v~~k~-g~~~s~~~~~~v~C~ 176 (205)
+++.++++.++++ +.+...++.+.++|+
T Consensus 72 ~~v~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 72 FDVTYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred eEEEEEEEEEEEEcccceeeeEEEeEEeE
Confidence 7777777777774 433334455555554
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.50 E-value=2.8e-06 Score=60.31 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=56.0
Q ss_pred eEEEEEEEEEEEecCCCeeeEEEecEEEEEEEcCeeeeeeeeeccceeecCCCeeEEEEEEeeC
Q 036130 62 RIKADYHLVFSMKNPNKKVPLVINNFEILLLYKNDTVLIQTWITEAVSLEKMSQKNWSPEFPRD 125 (205)
Q Consensus 62 ~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~~lg~~~~~p~f~q~~~~~~~~~~~l~~~ 125 (205)
..+.++.+++++.|||. +++.|+.++..++|+|.. +|.+....+...++++++.+++.+..+
T Consensus 12 ~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~-v~~g~~~~~~~ipa~~~~~v~v~~~~~ 73 (100)
T smart00769 12 GLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVE-LGSGEIPDSGTLPGNGRTVLDVPVTVN 73 (100)
T ss_pred ceEEEEEEEEEEECCCC-CccccccEEEEEEECCEE-EEEEEcCCCcEECCCCcEEEEEEEEee
Confidence 67899999999999997 999999999999999999 999998237999999999998887764
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.10 E-value=0.00055 Score=55.59 Aligned_cols=119 Identities=10% Similarity=0.133 Sum_probs=77.2
Q ss_pred EecCCcEEEEEEEEEeeEeeCCCCCceEEEEEEEEEEEecCCCeeeEEEecEEEEEEEcCeeeeeeeeeccceeecCCCe
Q 036130 36 VHPLCPVFTVSSFTVSNLTLSNNNDSRIKADYHLVFSMKNPNKKVPLVINNFEILLLYKNDTVLIQTWITEAVSLEKMSQ 115 (205)
Q Consensus 36 ~rP~~P~f~v~s~~l~~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~~lg~~~~~p~f~q~~~~~ 115 (205)
+-||...++-.++......++.. .+.+..+++-++.++|||. ..+.-..+.+++.|.... +|.+..-.....+|++.
T Consensus 96 LfPRsV~v~~~gv~s~~V~f~~~-~~~v~l~itn~lNIsN~NF-y~V~Vt~~s~qv~~~~~V-VG~~~~~~~~~I~Prs~ 172 (238)
T PF07092_consen 96 LFPRSVTVSPVGVKSVTVSFNPD-KSTVQLNITNTLNISNPNF-YPVTVTNLSIQVLYMKTV-VGKGKNSNITVIGPRSS 172 (238)
T ss_pred EeCcEEEEecCcEEEEEEEEeCC-CCEEEEEEEEEEEccCCCE-EEEEEEeEEEEEEEEEeE-EeeeEecceEEecccCC
Confidence 44887666655555555444433 3468889999999999995 999999999999999988 99887723457788888
Q ss_pred eEEEEEEeeCcCccCChhhHHHhhcc--ccCceEEEEEEEEEEEEE
Q 036130 116 KNWSPEFPRDFGEPLHGREFNEIGKD--WSKRVVSFDVKMKIEARF 159 (205)
Q Consensus 116 ~~~~~~l~~~~~~~l~~~~~~~l~~d--~~~g~v~l~v~v~~~v~~ 159 (205)
+.+...+... ......-+.++=.. +.-..+.+.+.+.....|
T Consensus 173 ~q~~~tV~t~--i~~~~~yv~~~Ct~~~ikvH~i~l~~Q~Tvt~sY 216 (238)
T PF07092_consen 173 KQVNYTVKTT--IGDENSYVYKYCTWPKIKVHNIVLHMQGTVTVSY 216 (238)
T ss_pred ceEEEEeeEE--ecCcchhHhHhhcCccceEEEEEEEEEEEEEEEE
Confidence 7777665543 21111112333332 222445555555555544
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.64 E-value=0.00036 Score=60.16 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=62.1
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHheeeeEEEecCCcEEEEEEEEEeeEeeCCCCCceEEEEEEEEEEEecCCCeeeE
Q 036130 3 ENSQCFHFVRRLITALLFLFVLISVVSWIAWLIVHPLCPVFTVSSFTVSNLTLSNNNDSRIKADYHLVFSMKNPNKKVPL 82 (205)
Q Consensus 3 ~~~~c~~~~~~~~~~l~~l~~~~~i~~li~~lv~rP~~P~f~v~s~~l~~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i 82 (205)
.+++|.++..|+++.+++++++.+++.+++. -.+|--.|+-..+++.-.+ .--.-|++++.+.|||- +.|
T Consensus 295 ~r~~~~r~~~c~~~~i~~lL~ig~~~gFv~A----ttKpL~~v~v~~I~NVlaS-----~qELmfdl~V~A~NPn~-~~V 364 (387)
T PF12751_consen 295 QRSWFSRFASCIYLSILLLLVIGFAIGFVFA----TTKPLTDVQVVSIQNVLAS-----EQELMFDLTVEAFNPNW-FTV 364 (387)
T ss_pred cccHHhhhhHHHHHHHHHHHHHHHHHHhhhh----cCcccccceEEEeeeeeec-----cceEEEeeEEEEECCCe-EEE
Confidence 4678999999988777665555555554443 3445455555555554333 34688999999999996 999
Q ss_pred EEecEEEEEEEcCeeeeee
Q 036130 83 VINNFEILLLYKNDTVLIQ 101 (205)
Q Consensus 83 ~Y~~~~~~v~Y~g~~~lg~ 101 (205)
..++.++++|-+... +|.
T Consensus 365 ~I~d~dldIFAKS~y-vg~ 382 (387)
T PF12751_consen 365 TIDDMDLDIFAKSRY-VGT 382 (387)
T ss_pred EeccceeeeEecCCc-cCc
Confidence 999999999977665 553
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.42 E-value=0.018 Score=43.52 Aligned_cols=104 Identities=10% Similarity=0.074 Sum_probs=73.8
Q ss_pred CCcEEEEEEEEEeeEeeCCCCCceEEEEEEEEEEEecCCCeeeEEEecEEEEEEEcCeeeeeeeeeccceeecCCCeeEE
Q 036130 39 LCPVFTVSSFTVSNLTLSNNNDSRIKADYHLVFSMKNPNKKVPLVINNFEILLLYKNDTVLIQTWITEAVSLEKMSQKNW 118 (205)
Q Consensus 39 ~~P~f~v~s~~l~~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~~lg~~~~~p~f~q~~~~~~~~ 118 (205)
++|...--.+..-.. + .....+-.++.++|||. +.|-....+..++-.|.+ +|.+..+.++..++++...+
T Consensus 31 ~~p~ve~~ka~wGkv--t-----~s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Ik-i~eG~~~k~~~v~p~S~~tv 101 (161)
T COG5608 31 KKPGVESMKAKWGKV--T-----NSETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIK-IGEGEILKGTTVPPNSRETV 101 (161)
T ss_pred CCCCceEEEEEEEEE--e-----ccceEEEEEEEecCCCC-cceeeeceEEEEEEcceE-eeccccccceEECCCCeEEE
Confidence 456555555554442 2 34578889999999997 899999999999999999 99998868899999999999
Q ss_pred EEEEeeCcCccCChhhHHHhhccccCceE-EEEEEEEEE
Q 036130 119 SPEFPRDFGEPLHGREFNEIGKDWSKRVV-SFDVKMKIE 156 (205)
Q Consensus 119 ~~~l~~~~~~~l~~~~~~~l~~d~~~g~v-~l~v~v~~~ 156 (205)
.+.+..+ .-.+ .+-+...+.+|.- +..+++.+.
T Consensus 102 dv~l~~d-~~~~----ke~w~~hi~ngErs~Ir~~i~~~ 135 (161)
T COG5608 102 DVPLRLD-NSKI----KEWWVTHIENGERSTIRVRIKGV 135 (161)
T ss_pred EEEEEEe-hHHH----HHHHHHHhhccCcccEEEEEEEE
Confidence 9888766 3223 2444445555532 344444433
No 7
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=90.31 E-value=4.7 Score=30.98 Aligned_cols=68 Identities=10% Similarity=0.064 Sum_probs=42.9
Q ss_pred EEEEEEEEecCCCeeeEEEecEEEEEEEcCeeeeeeeeeccceeecCCCeeEEEEE-EeeC-cCccCChhhHHHhhcc
Q 036130 66 DYHLVFSMKNPNKKVPLVINNFEILLLYKNDTVLIQTWITEAVSLEKMSQKNWSPE-FPRD-FGEPLHGREFNEIGKD 141 (205)
Q Consensus 66 ~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~~lg~~~~~p~f~q~~~~~~~~~~~-l~~~-~~~~l~~~~~~~l~~d 141 (205)
.+.+.+.+...+..+.+.|+.+-=++|=.|+.+++.+.+ . +. + .+++. +-++ .....+++++++|.+.
T Consensus 77 ~~~v~F~vtD~~~~v~V~Y~GilPDlFrEG~gVVveG~~-~----~~-g--~F~A~evLAKhdekYmPpEv~~al~~~ 146 (159)
T PRK13150 77 SLKVNFSLYDAEGSVTVSYEGILPDLFREGQGVVVQGTL-E----KG-N--HVLAHEVLAKHDENYTPPEVEKAMQEN 146 (159)
T ss_pred CcEEEEEEEcCCcEEEEEEeccCCccccCCCeEEEEEEE-C----CC-C--EEEEeEEEeCCCCCCCCHHHHHHHHHh
Confidence 455666777777778888888877778778877777777 2 11 1 22222 2222 2456778887777653
No 8
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=87.06 E-value=9.1 Score=29.05 Aligned_cols=67 Identities=10% Similarity=0.094 Sum_probs=41.7
Q ss_pred EEEEEEEEecCCCeeeEEEecEEEEEEEcCeeeeeeeeeccceeecCCCeeEEEEE--EeeCcCccCChhhHHHhhc
Q 036130 66 DYHLVFSMKNPNKKVPLVINNFEILLLYKNDTVLIQTWITEAVSLEKMSQKNWSPE--FPRDFGEPLHGREFNEIGK 140 (205)
Q Consensus 66 ~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~~lg~~~~~p~f~q~~~~~~~~~~~--l~~~~~~~l~~~~~~~l~~ 140 (205)
++.+.+.+.--|..+.+.|..+-=++|=.|+.+++.+.+ |.+ ..+.+. +........++++..+|+.
T Consensus 71 ~~~v~F~vtD~~~~v~V~Y~GiLPDLFREGQgVVa~G~~-----~~~---~~f~A~~vLAKHdEnY~P~ev~~~mk~ 139 (153)
T COG2332 71 SLKVSFVVTDGNKSVTVSYEGILPDLFREGQGVVAEGQL-----QGG---GVFEAKEVLAKHDENYTPPEVAKAMKK 139 (153)
T ss_pred CcEEEEEEecCCceEEEEEeccCchhhhcCCeEEEEEEe-----cCC---CEEEeeehhhcCCcccCCHHHHHHhhh
Confidence 334444444667779999999888888889988888887 222 222222 2222134566677677665
No 9
>PLN03160 uncharacterized protein; Provisional
Probab=82.11 E-value=25 Score=28.37 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=26.0
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHheeeeEEEecC--CcEEEEEEEEE
Q 036130 2 KENSQCFHFVRRLITALLFLFVLISVVSWIAWLIVHPL--CPVFTVSSFTV 50 (205)
Q Consensus 2 ~~~~~c~~~~~~~~~~l~~l~~~~~i~~li~~lv~rP~--~P~f~v~s~~l 50 (205)
+...+||+|+..++.++.++++++. .+++ -.=.|+ --.++++.+.+
T Consensus 34 ~~~~~c~~~~~a~~l~l~~v~~~l~--~~vf-rPk~P~~~v~~v~l~~~~~ 81 (219)
T PLN03160 34 RNCIKCCGCITATLLILATTILVLV--FTVF-RVKDPVIKMNGVTVTKLEL 81 (219)
T ss_pred ccceEEHHHHHHHHHHHHHHHHhee--eEEE-EccCCeEEEEEEEEeeeee
Confidence 4556778888777777677666543 2344 334553 34455555544
No 10
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=82.02 E-value=3.4 Score=30.22 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=33.0
Q ss_pred HHHHHHHHHheeeeE--EEecCCcEEEEEEEEEeeEeeCCCCCceEEEEEEEEEEEecCCC
Q 036130 20 FLFVLISVVSWIAWL--IVHPLCPVFTVSSFTVSNLTLSNNNDSRIKADYHLVFSMKNPNK 78 (205)
Q Consensus 20 ~l~~~~~i~~li~~l--v~rP~~P~f~v~s~~l~~~~~~~~~~~~l~~~~~~~l~~~NPN~ 78 (205)
.++++++++.+++|. .-+++.|.+.+......+ .....+-+-++++|--.
T Consensus 11 s~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r---------~~~gqyyVpF~V~N~gg 62 (122)
T TIGR02588 11 STLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVER---------MQTGQYYVPFAIHNLGG 62 (122)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeE---------EeCCEEEEEEEEEeCCC
Confidence 445555666666654 456788999888766644 23456777788888665
No 11
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=71.65 E-value=43 Score=25.63 Aligned_cols=64 Identities=8% Similarity=0.094 Sum_probs=37.8
Q ss_pred EEEEEecCCCeeeEEEecEEEEEEEcCeeeeeeeeeccceeecCCCeeEEEEE-EeeC-cCccCChhhHHHhhcc
Q 036130 69 LVFSMKNPNKKVPLVINNFEILLLYKNDTVLIQTWITEAVSLEKMSQKNWSPE-FPRD-FGEPLHGREFNEIGKD 141 (205)
Q Consensus 69 ~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~~lg~~~~~p~f~q~~~~~~~~~~~-l~~~-~~~~l~~~~~~~l~~d 141 (205)
+.+.+.--+..+.+.|..+-=++|=.|+.+++.+.+ . + + .+++. +-++ .....++++++.|++.
T Consensus 74 v~F~vtD~~~~v~V~Y~GilPDlFrEGqgVVaeG~~-~----~--g--~F~A~~vLAKHde~YmP~Ev~~al~~~ 139 (155)
T PRK13159 74 VSFTVIDKNAATQVEYTGILPDLFRDNQSVIANGRM-Q----G--G--RFVANEVLAKHDETYMPKELKDAMAEG 139 (155)
T ss_pred EEEEEEcCCcEEEEEEccCCCccccCCCeEEEEEEE-c----C--C--EEEEeEEEecCCCcCCCHHHHHHHHhc
Confidence 334443445568888888777777777777777777 3 1 1 23222 2222 1356777777777654
No 12
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=66.35 E-value=55 Score=24.80 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=23.5
Q ss_pred EEEEEEEecCCCeeeEEEecEEEEEEEcCeeeeeeeee
Q 036130 67 YHLVFSMKNPNKKVPLVINNFEILLLYKNDTVLIQTWI 104 (205)
Q Consensus 67 ~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~~lg~~~~ 104 (205)
..+++.+.-.+..+.+.|+..-=+.+=.|+.++..+.+
T Consensus 71 ~~~~F~ltD~~~~i~V~Y~G~lPd~F~eg~~VVv~G~~ 108 (148)
T PRK13254 71 LTVRFVVTDGNATVPVVYTGILPDLFREGQGVVAEGRL 108 (148)
T ss_pred CEEEEEEEeCCeEEEEEECCCCCccccCCCEEEEEEEE
Confidence 34445555556667788876655555556665777666
No 13
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.99 E-value=5.2 Score=31.29 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHheeeeEEEecCCcEEEEEEEEE---eeEeeCC
Q 036130 10 FVRRLITALLFLFVLISVVSWIAWLIVHPLCPVFTVSSFTV---SNLTLSN 57 (205)
Q Consensus 10 ~~~~~~~~l~~l~~~~~i~~li~~lv~rP~~P~f~v~s~~l---~~~~~~~ 57 (205)
.-+++|.+++++.++++ ++++.+++.|+.|..++.+++= ..|.+++
T Consensus 10 ~WKw~f~iLLAln~l~~--~~i~~~vlsp~ee~t~~~~a~~~~~~~fqitt 58 (197)
T COG4698 10 YWKWLFFILLALNTLLA--VLIALFVLSPREEPTHLEDASEKSEKSFQITT 58 (197)
T ss_pred HHHHHHHHHHHHHHHHH--HHhheeeccCCCCCchhhccCcccceeEEEEc
Confidence 34556666655544433 5667778999997777766544 3355554
No 14
>PHA03054 IMV membrane protein; Provisional
Probab=63.23 E-value=4.9 Score=26.34 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHheeee
Q 036130 8 FHFVRRLITALLFLFVLISVVSWIAW 33 (205)
Q Consensus 8 ~~~~~~~~~~l~~l~~~~~i~~li~~ 33 (205)
.+...+.+++++++++++++..+++|
T Consensus 43 ~~~~~~~~~ii~l~~v~~~~l~~flY 68 (72)
T PHA03054 43 TGCWGWYWLIIIFFIVLILLLLIYLY 68 (72)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443333333333333344
No 15
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=62.13 E-value=56 Score=23.41 Aligned_cols=29 Identities=3% Similarity=-0.032 Sum_probs=13.8
Q ss_pred EcCeeeeeeeee-ccceeecCCCeeEEEEEEeeC
Q 036130 93 YKNDTVLIQTWI-TEAVSLEKMSQKNWSPEFPRD 125 (205)
Q Consensus 93 Y~g~~~lg~~~~-~p~f~q~~~~~~~~~~~l~~~ 125 (205)
|++.. +|...+ .|+ +...+..++..+.-.
T Consensus 72 ~d~ae-VGrreV~vp~---~~~~~~~~~v~v~Tt 101 (112)
T PF14155_consen 72 YDGAE-VGRREVLVPP---SGERTVRVTVTVRTT 101 (112)
T ss_pred CCCCE-EEEEEEEECC---CCCcEEEEEEEEEec
Confidence 55566 786544 143 233334445554433
No 16
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=60.82 E-value=28 Score=25.61 Aligned_cols=18 Identities=28% Similarity=0.678 Sum_probs=7.1
Q ss_pred EEEEEecCCCeeeEEEec
Q 036130 69 LVFSMKNPNKKVPLVINN 86 (205)
Q Consensus 69 ~~l~~~NPN~~~~i~Y~~ 86 (205)
+++.+...++.+.+.|+.
T Consensus 73 ~~F~i~D~~~~i~V~Y~G 90 (131)
T PF03100_consen 73 LTFTITDGGKEIPVVYTG 90 (131)
T ss_dssp EEEEEE-SS-EEEEEEES
T ss_pred EEEEEEECCcEEEEEECC
Confidence 334444445445554443
No 17
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=58.00 E-value=54 Score=25.87 Aligned_cols=30 Identities=3% Similarity=-0.052 Sum_probs=21.7
Q ss_pred ecCCcEEEEEEEEEeeEeeCCCCCceEEEEEEEE
Q 036130 37 HPLCPVFTVSSFTVSNLTLSNNNDSRIKADYHLV 70 (205)
Q Consensus 37 rP~~P~f~v~s~~l~~~~~~~~~~~~l~~~~~~~ 70 (205)
.++.|.|..++++...|+.++ .+++.+...
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~G----~l~y~l~a~ 66 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPEG----ALSYKLVAQ 66 (192)
T ss_pred CCCCCCEEEeccEEEEECCCC----CEEEEEEec
Confidence 467899999999999987754 345554443
No 18
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=55.19 E-value=43 Score=27.64 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=18.3
Q ss_pred eEEEEEEEEEEEecCCCeeeEEE
Q 036130 62 RIKADYHLVFSMKNPNKKVPLVI 84 (205)
Q Consensus 62 ~l~~~~~~~l~~~NPN~~~~i~Y 84 (205)
.+...=++++.++|||.++.=+.
T Consensus 105 ~~~S~rnvtvnarn~~g~v~~~l 127 (292)
T KOG3950|consen 105 YLQSARNVTVNARNPNGKVTGQL 127 (292)
T ss_pred EEEeccCeeEEccCCCCceeeeE
Confidence 56777889999999999766444
No 19
>PHA02844 putative transmembrane protein; Provisional
Probab=53.34 E-value=11 Score=24.96 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHheeeeE
Q 036130 11 VRRLITALLFLFVLISVVSWIAWL 34 (205)
Q Consensus 11 ~~~~~~~l~~l~~~~~i~~li~~l 34 (205)
..+..++++++++++++..+++||
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLTFLYL 69 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443334444444445565
No 20
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=52.04 E-value=77 Score=26.29 Aligned_cols=12 Identities=0% Similarity=-0.122 Sum_probs=7.9
Q ss_pred EEEEcCeeeeeee
Q 036130 90 LLLYKNDTVLIQT 102 (205)
Q Consensus 90 ~v~Y~g~~~lg~~ 102 (205)
.|.|+|.+ +|..
T Consensus 50 ~V~~~Gv~-VG~V 61 (291)
T TIGR00996 50 KVRVRGVP-VGKV 61 (291)
T ss_pred ceEEcceE-EEEE
Confidence 45677777 7754
No 21
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=49.90 E-value=26 Score=22.63 Aligned_cols=16 Identities=25% Similarity=0.603 Sum_probs=11.9
Q ss_pred HHHHHheeeeEEEecC
Q 036130 24 LISVVSWIAWLIVHPL 39 (205)
Q Consensus 24 ~~~i~~li~~lv~rP~ 39 (205)
+.+.+..+.|++++|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 3344567889999998
No 22
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=49.21 E-value=19 Score=22.54 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=9.9
Q ss_pred HHHheeeeEEEecC
Q 036130 26 SVVSWIAWLIVHPL 39 (205)
Q Consensus 26 ~i~~li~~lv~rP~ 39 (205)
.++++++|+..||+
T Consensus 43 ~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 43 LFIVVFVYLKTRPR 56 (56)
T ss_pred HHHhheeEEeccCC
Confidence 34556788888885
No 23
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=48.17 E-value=45 Score=24.11 Aligned_cols=26 Identities=12% Similarity=0.314 Sum_probs=19.7
Q ss_pred EEEEEEEEEEecCCCeeeEEEecEEEE
Q 036130 64 KADYHLVFSMKNPNKKVPLVINNFEIL 90 (205)
Q Consensus 64 ~~~~~~~l~~~NPN~~~~i~Y~~~~~~ 90 (205)
..++..++.+.||.. +++..+.+.++
T Consensus 99 g~~~~~~~~l~NPS~-~ti~lG~v~~~ 124 (125)
T PF12505_consen 99 GINLNATVTLPNPSP-LTIDLGNVTLN 124 (125)
T ss_pred cEEEEEEEEEcCCCe-EEEEeccEEEe
Confidence 567788888999996 78777666554
No 24
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=47.87 E-value=1.7e+02 Score=27.06 Aligned_cols=67 Identities=10% Similarity=0.073 Sum_probs=37.2
Q ss_pred EEEecEEEEEEEcCeeeeeeeeeccceeecCCCeeEEEEEEeeCcCccCChhhHHHhhccccCceEEEEEEEEEE
Q 036130 82 LVINNFEILLLYKNDTVLIQTWITEAVSLEKMSQKNWSPEFPRDFGEPLHGREFNEIGKDWSKRVVSFDVKMKIE 156 (205)
Q Consensus 82 i~Y~~~~~~v~Y~g~~~lg~~~~~p~f~q~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~d~~~g~v~l~v~v~~~ 156 (205)
+..++..+.+ |+|.- -|.+.+ . .......++....++ ++++.+-...-...+.-.|...+++.+.+.
T Consensus 468 l~l~~l~~~l-~~G~~-~~~~~l-d----~~~~~~~~~~~~~~~-~v~l~~Ll~~~~~~~~l~G~~~~~~~l~g~ 534 (604)
T PF05170_consen 468 LTLDPLSAKL-YGGSL-SGSASL-D----ARQDPPQYSLNLNLR-GVQLQPLLQDLALPDPLSGTGDLNLDLTGQ 534 (604)
T ss_pred EEEeeeeEec-CCcEE-EEEEEE-e----ccCCCccEEEeeeeC-CcchHHHHhhhccccCceEEEEEEEEEEeC
Confidence 3444555555 77776 666666 2 233334556666666 777754332222224456777776666554
No 25
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=47.56 E-value=29 Score=24.41 Aligned_cols=23 Identities=13% Similarity=0.457 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHheeeeEEE
Q 036130 14 LITALLFLFVLISVVSWIAWLIV 36 (205)
Q Consensus 14 ~~~~l~~l~~~~~i~~li~~lv~ 36 (205)
++.+++.+++++.++.+|.|+++
T Consensus 64 ili~lls~v~IlVily~IyYFVI 86 (101)
T PF06024_consen 64 ILISLLSFVCILVILYAIYYFVI 86 (101)
T ss_pred hHHHHHHHHHHHHHHhhheEEEE
Confidence 44555555555555555666644
No 26
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=46.92 E-value=1.1e+02 Score=22.09 Aligned_cols=63 Identities=6% Similarity=-0.007 Sum_probs=35.3
Q ss_pred eeeeeeccceeecCCC-eeEEEEEEeeCcCccCChhhHHHhhccc-cCceEEEEEEEEEEEEEEEeEEEEecE
Q 036130 99 LIQTWITEAVSLEKMS-QKNWSPEFPRDFGEPLHGREFNEIGKDW-SKRVVSFDVKMKIEARFTYGIWLSKRR 169 (205)
Q Consensus 99 lg~~~~~p~f~q~~~~-~~~~~~~l~~~~~~~l~~~~~~~l~~d~-~~g~v~l~v~v~~~v~~k~g~~~s~~~ 169 (205)
+|...+ |+......+ ....+..+... +.+...++.++. .+..+.+.++.+ .+.++|+++.+..
T Consensus 3 f~~~~l-P~~~~~~~~~~~~~~~~l~i~-----d~~~f~~f~~~~~~~~~~~l~l~g~--~~~~~g~l~~~~i 67 (125)
T PF12505_consen 3 FATLDL-PQIKIKGNGTISIIDQTLTIT-----DQDAFTQFVTALLFNEEVTLTLRGK--TDTHLGGLPFSGI 67 (125)
T ss_pred eEEEEC-CCEEecCCceEEEeeeeEEec-----CHHHHHHHHHHHHhCCcEEEEEEEe--eeEEEccEEEEEE
Confidence 677788 988882222 22233333322 445667777774 455566655544 4666787754433
No 27
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.69 E-value=82 Score=27.29 Aligned_cols=52 Identities=10% Similarity=-0.052 Sum_probs=24.0
Q ss_pred EEEEcCeeeeeeeeeccceeecCCCeeEEEEEEeeCcCccCChhhHHHhhccccCce
Q 036130 90 LLLYKNDTVLIQTWITEAVSLEKMSQKNWSPEFPRDFGEPLHGREFNEIGKDWSKRV 146 (205)
Q Consensus 90 ~v~Y~g~~~lg~~~~~p~f~q~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~d~~~g~ 146 (205)
.|.|+|.. +|...- =.+.. ... .+.+++..++..+++.+...++...---|.
T Consensus 58 ~V~~~GV~-VG~V~~-I~~~~-~~~--~~~v~~~id~~~~Ip~~s~A~I~~~gL~G~ 109 (359)
T COG1463 58 PVRYRGVK-VGKVAS-ISLDP-KPN--GARVTLEIDSDYPIPADSTASIRTTGLLGE 109 (359)
T ss_pred ceEEcCEE-eEEEEE-EEecC-CCC--ceEEEEEecCCcccCCCceeeeeeccccce
Confidence 35677878 776542 11111 223 333444443345666555444444333333
No 28
>PHA02650 hypothetical protein; Provisional
Probab=45.31 E-value=14 Score=24.76 Aligned_cols=25 Identities=8% Similarity=0.046 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHheeeeE
Q 036130 10 FVRRLITALLFLFVLISVVSWIAWL 34 (205)
Q Consensus 10 ~~~~~~~~l~~l~~~~~i~~li~~l 34 (205)
...+.+++++++++++.+..+++||
T Consensus 46 ~~~~~~~ii~i~~v~i~~l~~flYL 70 (81)
T PHA02650 46 WFNGQNFIFLIFSLIIVALFSFFVF 70 (81)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334334333333333444445555
No 29
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=45.07 E-value=1.2e+02 Score=22.29 Aligned_cols=60 Identities=13% Similarity=0.162 Sum_probs=39.5
Q ss_pred EEEEEEEEeeEeeCCCCCceEEEEEEEEEEEecCCCeeeEEEecEEEEEE-EcCeeeeeeeeecc
Q 036130 43 FTVSSFTVSNLTLSNNNDSRIKADYHLVFSMKNPNKKVPLVINNFEILLL-YKNDTVLIQTWITE 106 (205)
Q Consensus 43 f~v~s~~l~~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~-Y~g~~~lg~~~~~p 106 (205)
-..+.+++++..+.... .-.-.+.++.+++|... ....|-.++++++ -+|+. ++.-.+.|
T Consensus 48 ~~~~~l~i~~~~~~~~~--~~~~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~g~~-l~~r~~~P 108 (149)
T PF11906_consen 48 RDIDALKIESSDLRPVP--DGPGVLVVSGTIRNRAD-FPQALPALELSLLDAQGQP-LARRVFTP 108 (149)
T ss_pred cCcceEEEeeeeEEeec--CCCCEEEEEEEEEeCCC-CcccCceEEEEEECCCCCE-EEEEEECh
Confidence 34555555443333211 23567888899999986 6889999999998 66776 66555535
No 30
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=43.34 E-value=36 Score=20.41 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHheeeeEEEecC
Q 036130 16 TALLFLFVLISVVSWIAWLIVHPL 39 (205)
Q Consensus 16 ~~l~~l~~~~~i~~li~~lv~rP~ 39 (205)
.++.+..+++++...-+|..+.|.
T Consensus 10 ~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 10 LAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred HHHHHHHHHHHHhhheeeeccCCc
Confidence 344556677788888899988874
No 31
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=42.56 E-value=11 Score=29.62 Aligned_cols=23 Identities=9% Similarity=0.332 Sum_probs=16.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q 036130 5 SQCFHFVRRLITALLFLFVLISV 27 (205)
Q Consensus 5 ~~c~~~~~~~~~~l~~l~~~~~i 27 (205)
-||.++.|++|.+++.+++-..+
T Consensus 107 V~CNpl~R~~~SivfTi~fy~~~ 129 (214)
T PF06837_consen 107 VCCNPLIRGIFSIVFTILFYTLL 129 (214)
T ss_pred hhcChHHHHHHHHHHHHHHHHHH
Confidence 38889999999988765554333
No 32
>PRK05529 cell division protein FtsQ; Provisional
Probab=42.19 E-value=41 Score=27.78 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=28.2
Q ss_pred CcEEEEEEEEEeeEeeCCC-----------CCc--------------eEEEEEEEEEEEecCCCeeeEEEec
Q 036130 40 CPVFTVSSFTVSNLTLSNN-----------NDS--------------RIKADYHLVFSMKNPNKKVPLVINN 86 (205)
Q Consensus 40 ~P~f~v~s~~l~~~~~~~~-----------~~~--------------~l~~~~~~~l~~~NPN~~~~i~Y~~ 86 (205)
.|.|.|+++.+++-...+. ..+ .+..-=+++++-+.||. +.|+..+
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~t-l~I~V~E 128 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGT-IVVRVVE 128 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCE-EEEEEEE
Confidence 5899999999987543211 001 11222355778889996 7777643
No 33
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=41.66 E-value=1.6e+02 Score=22.64 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=37.7
Q ss_pred EEEEEEecCCCeeeEEEecEEEEEEEcCeeeeeeeeeccceeecCCCeeEEEEE-EeeC-cCccCChhhHHHhhc
Q 036130 68 HLVFSMKNPNKKVPLVINNFEILLLYKNDTVLIQTWITEAVSLEKMSQKNWSPE-FPRD-FGEPLHGREFNEIGK 140 (205)
Q Consensus 68 ~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~~lg~~~~~p~f~q~~~~~~~~~~~-l~~~-~~~~l~~~~~~~l~~ 140 (205)
.+.+.+.--...+.+.|..+-=++|=.|+.+++.+.+ . +. + .+.+. +-++ .....+++++++|.+
T Consensus 79 ~v~F~vtD~~~~v~V~Y~GilPDlFrEG~gVVveG~~-~----~~-g--~F~A~~vLAKhdekYmPpEv~~al~~ 145 (160)
T PRK13165 79 KVSFTLYDAGGSVTVTYEGILPDLFREGQGIVAQGVL-E----EG-N--HIEAKEVLAKHDENYTPPEVEEAMKK 145 (160)
T ss_pred EEEEEEEcCCeEEEEEEcccCCccccCCCeEEEEEEE-C----CC-C--eEEEEEEEecCCCCCCCHHHHHHHHh
Confidence 3444444445568888887777777777776777777 2 11 1 22221 2222 145677777777764
No 34
>CHL00020 psbN photosystem II protein N
Probab=40.90 E-value=42 Score=19.87 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHheeeeEEEecC
Q 036130 16 TALLFLFVLISVVSWIAWLIVHPL 39 (205)
Q Consensus 16 ~~l~~l~~~~~i~~li~~lv~rP~ 39 (205)
.++.+..+++++...-+|..+.|-
T Consensus 7 ~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 7 VAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred HHHHHHHHHHHhhheeeeeccCCc
Confidence 344556677788888889988873
No 35
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=40.73 E-value=24 Score=32.30 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=21.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHheeeeEEEec
Q 036130 7 CFHFVRRLITALLFLFVLISVVSWIAWLIVHP 38 (205)
Q Consensus 7 c~~~~~~~~~~l~~l~~~~~i~~li~~lv~rP 38 (205)
|.+.++.+|..+.+++++++++.|+.-++|++
T Consensus 473 ~pKanK~LWIsvAliVLLAaLlSfLtg~~fq~ 504 (538)
T PF05781_consen 473 FPKANKVLWISVALIVLLAALLSFLTGLFFQR 504 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 34555777877777777777777666666654
No 36
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=38.76 E-value=40 Score=20.94 Aligned_cols=29 Identities=24% Similarity=0.516 Sum_probs=17.1
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHhe
Q 036130 2 KENSQCFHFVRRLITALLFLFVLISVVSW 30 (205)
Q Consensus 2 ~~~~~c~~~~~~~~~~l~~l~~~~~i~~l 30 (205)
++++.+..++..++--++.++++++++.+
T Consensus 32 ~~~s~~~~~l~~~~~p~~~iL~~~a~is~ 60 (64)
T smart00831 32 KKRSPLLRFLRQFHNPLIYILLAAAVLSA 60 (64)
T ss_pred CCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34667777777776655555544444433
No 37
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=37.55 E-value=9.1 Score=19.91 Aligned_cols=20 Identities=10% Similarity=0.321 Sum_probs=11.2
Q ss_pred HHHHHHHHheeeeEEEecCC
Q 036130 21 LFVLISVVSWIAWLIVHPLC 40 (205)
Q Consensus 21 l~~~~~i~~li~~lv~rP~~ 40 (205)
.++.+++.+..+|..++|.+
T Consensus 5 ~~v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 5 GIVAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHHHhCccc
Confidence 34444555555566677753
No 38
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=37.26 E-value=26 Score=26.73 Aligned_cols=22 Identities=9% Similarity=0.211 Sum_probs=15.1
Q ss_pred HHHHHHHheeeeEEEecCCcEE
Q 036130 22 FVLISVVSWIAWLIVHPLCPVF 43 (205)
Q Consensus 22 ~~~~~i~~li~~lv~rP~~P~f 43 (205)
.++++++++++|+..|++.-.|
T Consensus 61 ~ill~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 61 PILLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred HHHHHHHHhheeEEEecccCcc
Confidence 4445667777888888886443
No 39
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=36.52 E-value=15 Score=26.62 Aligned_cols=10 Identities=0% Similarity=0.155 Sum_probs=6.7
Q ss_pred eeeEEEecCC
Q 036130 31 IAWLIVHPLC 40 (205)
Q Consensus 31 i~~lv~rP~~ 40 (205)
++|+.+||..
T Consensus 15 i~yf~iRPQk 24 (113)
T PRK06531 15 LIFFMQRQQK 24 (113)
T ss_pred HHHheechHH
Confidence 3566799963
No 40
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=34.85 E-value=19 Score=20.59 Aligned_cols=14 Identities=21% Similarity=0.581 Sum_probs=7.5
Q ss_pred HHHHHheeeeEEEe
Q 036130 24 LISVVSWIAWLIVH 37 (205)
Q Consensus 24 ~~~i~~li~~lv~r 37 (205)
++.+..+|+|.++.
T Consensus 20 lv~imliif~f~le 33 (43)
T PF11395_consen 20 LVIIMLIIFWFSLE 33 (43)
T ss_pred HHHHHHHHHHHHHh
Confidence 33445556776553
No 41
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=34.05 E-value=85 Score=23.89 Aligned_cols=17 Identities=6% Similarity=0.012 Sum_probs=11.8
Q ss_pred eEEEecEEEEEEEcCee
Q 036130 81 PLVINNFEILLLYKNDT 97 (205)
Q Consensus 81 ~i~Y~~~~~~v~Y~g~~ 97 (205)
.-+|=.+++.+.+.+..
T Consensus 77 ~~rylkv~i~L~~~~~~ 93 (162)
T PRK07021 77 ADRVLYVGLTLRLPDEA 93 (162)
T ss_pred CceEEEEEEEEEECCHH
Confidence 45777777777776654
No 42
>PF14927 Neurensin: Neurensin
Probab=34.00 E-value=47 Score=25.00 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHheee-eEEEecCCcEE
Q 036130 9 HFVRRLITALLFLFVLISVVSWIA-WLIVHPLCPVF 43 (205)
Q Consensus 9 ~~~~~~~~~l~~l~~~~~i~~li~-~lv~rP~~P~f 43 (205)
..+..++.++-++++++|++++++ |+ -|++++.
T Consensus 41 s~~wkV~~i~g~l~Ll~Gi~~l~vgY~--vP~~~e~ 74 (140)
T PF14927_consen 41 SVCWKVGFISGLLLLLLGIVALTVGYL--VPPKIEV 74 (140)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcc--cCCccee
Confidence 333334555556677778776544 44 3444443
No 43
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=33.97 E-value=25 Score=29.88 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=13.4
Q ss_pred EEecCCcEEEEEEEEEeeEeeC
Q 036130 35 IVHPLCPVFTVSSFTVSNLTLS 56 (205)
Q Consensus 35 v~rP~~P~f~v~s~~l~~~~~~ 56 (205)
-+-|+.|++. ++..=.++.+.
T Consensus 72 tidp~~P~~~-~~~~~PGl~~~ 92 (300)
T KOG3927|consen 72 TIDPKVPKYK-DSGANPGLSFR 92 (300)
T ss_pred hcCCCCCccc-ccCCCCceeec
Confidence 4679999999 55333444444
No 44
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=33.74 E-value=31 Score=20.45 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHheeeeEEEecC
Q 036130 17 ALLFLFVLISVVSWIAWLIVHPL 39 (205)
Q Consensus 17 ~l~~l~~~~~i~~li~~lv~rP~ 39 (205)
++.+..+++++...-+|..+.|-
T Consensus 8 ~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 8 AIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred HHHHHHHHHHHHhhhhhheeCCC
Confidence 34455666777788889988763
No 45
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=33.73 E-value=60 Score=24.21 Aligned_cols=15 Identities=0% Similarity=-0.042 Sum_probs=9.1
Q ss_pred EEecEEEEEEEcCee
Q 036130 83 VINNFEILLLYKNDT 97 (205)
Q Consensus 83 ~Y~~~~~~v~Y~g~~ 97 (205)
+|=..++.+.+.+..
T Consensus 63 ~ylk~~i~l~~~~~~ 77 (142)
T PRK07718 63 NFIRIQFKIETDSKK 77 (142)
T ss_pred CEEEEEEEEEECCHH
Confidence 455666666666654
No 46
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=33.16 E-value=2e+02 Score=21.25 Aligned_cols=59 Identities=10% Similarity=0.142 Sum_probs=37.5
Q ss_pred HheeeeEEEec--CCcEEEEEEEEEeeEeeCCCCCceEEEEEEEEEEEecCCCeeeEEEecEEEEEEEcCee
Q 036130 28 VSWIAWLIVHP--LCPVFTVSSFTVSNLTLSNNNDSRIKADYHLVFSMKNPNKKVPLVINNFEILLLYKNDT 97 (205)
Q Consensus 28 ~~li~~lv~rP--~~P~f~v~s~~l~~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~ 97 (205)
+.+++|.++.. +.|+.++.+.+- +. .+-.+.+..+++|-.+ ..+..=.+++.+..+++.
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~--l~--------~~~~~~v~g~V~N~g~-~~i~~c~i~~~l~~~~~~ 93 (149)
T PF09624_consen 33 IPFFGYYWLDKYLKKIELTLTSQKR--LQ--------YSESFYVDGTVTNTGK-FTIKKCKITVKLYNDKQV 93 (149)
T ss_pred HHHHHHHHHhhhcCCceEEEeeeee--ee--------eccEEEEEEEEEECCC-CEeeEEEEEEEEEeCCCc
Confidence 33444555544 455555555433 22 3456777799999886 688777888888886654
No 47
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=32.64 E-value=50 Score=20.96 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=5.1
Q ss_pred HHHHHHheeeeE
Q 036130 23 VLISVVSWIAWL 34 (205)
Q Consensus 23 ~~~~i~~li~~l 34 (205)
+..++.+++.|+
T Consensus 48 ~S~~lG~~~~~~ 59 (60)
T PF06072_consen 48 LSGGLGALVAWH 59 (60)
T ss_pred HHHHHHHHhhcc
Confidence 333344444453
No 48
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=32.28 E-value=25 Score=26.99 Aligned_cols=18 Identities=22% Similarity=0.820 Sum_probs=11.3
Q ss_pred HHHHHHHheeeeEEEecC
Q 036130 22 FVLISVVSWIAWLIVHPL 39 (205)
Q Consensus 22 ~~~~~i~~li~~lv~rP~ 39 (205)
++++++++.++|+.+||-
T Consensus 12 l~l~~~~~y~~W~~~rpV 29 (157)
T PF06092_consen 12 LFLLACILYFLWLTLRPV 29 (157)
T ss_pred HHHHHHHHHhhhhccCCe
Confidence 344444437789888884
No 49
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=31.87 E-value=58 Score=27.00 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=24.2
Q ss_pred HHHHHHHheeeeEEEecCCcEEEEEEEEEeeE
Q 036130 22 FVLISVVSWIAWLIVHPLCPVFTVSSFTVSNL 53 (205)
Q Consensus 22 ~~~~~i~~li~~lv~rP~~P~f~v~s~~l~~~ 53 (205)
++++++.++++|...-++.|-|.+..+.+++=
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~Gn 70 (269)
T COG1589 39 LVLLLLVLVVLWVLILLSLPYFPIRKVSVSGN 70 (269)
T ss_pred HHHHHHHHHHHheehhhhcCCccceEEEEecC
Confidence 33344455677888889999999999999883
No 50
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=30.61 E-value=1.6e+02 Score=22.52 Aligned_cols=24 Identities=8% Similarity=0.386 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHheeeeEEE
Q 036130 13 RLITALLFLFVLISVVSWIAWLIV 36 (205)
Q Consensus 13 ~~~~~l~~l~~~~~i~~li~~lv~ 36 (205)
++..++++++++++..+..+|+..
T Consensus 19 ~I~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 19 WILLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred ehHHHHHHHHHHHHHHHHHHhhhc
Confidence 344444455555555666677765
No 51
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=30.21 E-value=61 Score=26.24 Aligned_cols=19 Identities=11% Similarity=-0.006 Sum_probs=10.1
Q ss_pred HHHHheeeeEEEecCCcEE
Q 036130 25 ISVVSWIAWLIVHPLCPVF 43 (205)
Q Consensus 25 ~~i~~li~~lv~rP~~P~f 43 (205)
+|..++.++-++|||....
T Consensus 172 ~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 172 IGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred hhcceEEEEEEeccccccc
Confidence 3333333334788886654
No 52
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=29.66 E-value=16 Score=19.70 Aligned_cols=20 Identities=10% Similarity=0.298 Sum_probs=11.3
Q ss_pred HHHHHHHHheeeeEEEecCC
Q 036130 21 LFVLISVVSWIAWLIVHPLC 40 (205)
Q Consensus 21 l~~~~~i~~li~~lv~rP~~ 40 (205)
.++.+++.+..++..+||.+
T Consensus 9 ~~va~~L~vYL~~ALlrPEr 28 (29)
T PRK14759 9 GAVSLGLLIYLTYALLRPER 28 (29)
T ss_pred HHHHHHHHHHHHHHHhCccc
Confidence 34444555555566678853
No 53
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=28.44 E-value=60 Score=25.86 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=7.1
Q ss_pred CccchhHHHHHHHHHH
Q 036130 4 NSQCFHFVRRLITALL 19 (205)
Q Consensus 4 ~~~c~~~~~~~~~~l~ 19 (205)
.|.|.+++..+|++++
T Consensus 43 ~s~~~~~~~~~~~~~~ 58 (200)
T PF05473_consen 43 KSPCACFLFIICGILI 58 (200)
T ss_pred CCCcccHHHHHHHHHH
Confidence 3555444444444433
No 54
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=28.42 E-value=8 Score=20.33 Aligned_cols=20 Identities=10% Similarity=0.394 Sum_probs=10.8
Q ss_pred HHHHHHHHheeeeEEEecCC
Q 036130 21 LFVLISVVSWIAWLIVHPLC 40 (205)
Q Consensus 21 l~~~~~i~~li~~lv~rP~~ 40 (205)
+++.+++.+..+|..+||.+
T Consensus 4 ~~l~~~L~~YL~~aLl~PEr 23 (26)
T TIGR02115 4 LVLAVGLFIYLFYALLRPER 23 (26)
T ss_pred HHHHHHHHHHHHHHHhCHHh
Confidence 34444444455555677753
No 55
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=28.03 E-value=29 Score=33.61 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=17.9
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHh
Q 036130 2 KENSQCFHFVRRLITALLFLFVLISVVS 29 (205)
Q Consensus 2 ~~~~~c~~~~~~~~~~l~~l~~~~~i~~ 29 (205)
+++..|.|.+..++..++.+++++|++.
T Consensus 132 ~~~~~c~R~~l~~~L~~~~~~il~g~i~ 159 (806)
T PF05478_consen 132 KKNDACRRGCLGILLLLLTLIILFGVIC 159 (806)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666677777654
No 56
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=27.49 E-value=51 Score=31.95 Aligned_cols=15 Identities=13% Similarity=0.368 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHh
Q 036130 15 ITALLFLFVLISVVS 29 (205)
Q Consensus 15 ~~~l~~l~~~~~i~~ 29 (205)
|..++++++.+++++
T Consensus 141 ~l~~~L~~~~~~il~ 155 (806)
T PF05478_consen 141 CLGILLLLLTLIILF 155 (806)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444433
No 57
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=27.02 E-value=22 Score=19.80 Aligned_cols=14 Identities=7% Similarity=0.603 Sum_probs=7.1
Q ss_pred HHHHHHHHheeeeE
Q 036130 21 LFVLISVVSWIAWL 34 (205)
Q Consensus 21 l~~~~~i~~li~~l 34 (205)
.+.++++.++++|+
T Consensus 11 vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 11 VVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHH
Confidence 34444555556664
No 58
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=26.93 E-value=14 Score=22.40 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=3.1
Q ss_pred ccchhHH
Q 036130 5 SQCFHFV 11 (205)
Q Consensus 5 ~~c~~~~ 11 (205)
.||||++
T Consensus 25 gcccccc 31 (56)
T TIGR03602 25 GCCCCCC 31 (56)
T ss_pred CeEEEec
Confidence 4444443
No 59
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=26.83 E-value=21 Score=25.83 Aligned_cols=34 Identities=9% Similarity=0.216 Sum_probs=0.0
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHheeeeEEEec
Q 036130 4 NSQCFHFVRRLITALLFLFVLISVVSWIAWLIVHP 38 (205)
Q Consensus 4 ~~~c~~~~~~~~~~l~~l~~~~~i~~li~~lv~rP 38 (205)
...|++.+.+.-+.+++.++++|-++ ..|++|.=
T Consensus 25 ~~s~sra~~vagltvLa~LLiAGQa~-TaYfv~~Q 58 (114)
T PF09307_consen 25 RGSCSRALKVAGLTVLACLLIAGQAV-TAYFVFQQ 58 (114)
T ss_dssp -----------------------------------
T ss_pred CCCccchhHHHHHHHHHHHHHHhHHH-HHHHHHHh
Confidence 34677777777677777777777654 56766653
No 60
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=26.67 E-value=1.1e+02 Score=24.03 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHheeeeEEEecCCc
Q 036130 12 RRLITALLFLFVLISVVSWIAWLIVHPLCP 41 (205)
Q Consensus 12 ~~~~~~l~~l~~~~~i~~li~~lv~rP~~P 41 (205)
++.|++++++ ++++++.++..+++|+.|
T Consensus 4 K~aF~~Lla~--~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 4 KWAFLILLAL--NLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHHH--HHHHHhheeeEEEccCCC
Confidence 3455555433 344455567778889876
No 61
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=24.85 E-value=79 Score=18.33 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=9.8
Q ss_pred HHHHheeeeEEEecC
Q 036130 25 ISVVSWIAWLIVHPL 39 (205)
Q Consensus 25 ~~i~~li~~lv~rP~ 39 (205)
+-++..++|++++++
T Consensus 32 ~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 32 FPIIGPILYLIFGRK 46 (46)
T ss_pred HHHHHHhheEEEeCC
Confidence 445566788877754
No 62
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=24.41 E-value=2.4e+02 Score=19.35 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=35.3
Q ss_pred eEEEEEEEEEEEecCCCee--eEEEecEEEEEEEcCeeeee--eeeeccceeecCCCeeEEEEEEee
Q 036130 62 RIKADYHLVFSMKNPNKKV--PLVINNFEILLLYKNDTVLI--QTWITEAVSLEKMSQKNWSPEFPR 124 (205)
Q Consensus 62 ~l~~~~~~~l~~~NPN~~~--~i~Y~~~~~~v~Y~g~~~lg--~~~~~p~f~q~~~~~~~~~~~l~~ 124 (205)
.+.-++++.+++.||...- .+...=....++|.|.. .. .... .....+|+++..+...+.-
T Consensus 12 ~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~-~~~~~~~~-~~~~l~p~~~~~~~~~i~p 76 (107)
T PF00927_consen 12 VVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLT-RDQFKKEK-FEVTLKPGETKSVEVTITP 76 (107)
T ss_dssp BTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTE-EEEEEEEE-EEEEE-TTEEEEEEEEE-H
T ss_pred cCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcc-cccEeEEE-cceeeCCCCEEEEEEEEEc
Confidence 4567899999999997521 12222244566788874 21 2233 4566777777777766553
No 63
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=22.19 E-value=69 Score=23.10 Aligned_cols=21 Identities=29% Similarity=0.717 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHheeeeEEEec
Q 036130 18 LLFLFVLISVVSWIAWLIVHP 38 (205)
Q Consensus 18 l~~l~~~~~i~~li~~lv~rP 38 (205)
++++++.++++.++.+|+++-
T Consensus 68 ii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 68 IIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred HHHHHHHHHHHHHHHHheeec
Confidence 345566667777777776653
No 64
>PF11606 AlcCBM31: Family 31 carbohydrate binding protein; InterPro: IPR021016 Beta-1,3-xylan is a homopolymer of b-1,3-linked D-xylose and is a polysaccharide peculiar to marine algae. Beta-1,3-xylanase is a beta-1,3-xylan hydrolyzing enzyme [].; GO: 0033905 xylan endo-1,3-beta-xylosidase activity; PDB: 2COV_F.
Probab=22.06 E-value=81 Score=21.56 Aligned_cols=23 Identities=17% Similarity=0.210 Sum_probs=18.0
Q ss_pred ecCCCeeeEEE-ecEEEEEEEcCe
Q 036130 74 KNPNKKVPLVI-NNFEILLLYKND 96 (205)
Q Consensus 74 ~NPN~~~~i~Y-~~~~~~v~Y~g~ 96 (205)
+||+..++++| ++.++.|++.+.
T Consensus 4 e~c~~dFg~~Yvsds~ievfH~d~ 27 (93)
T PF11606_consen 4 ENCSEDFGYNYVSDSEIEVFHKDN 27 (93)
T ss_dssp GGGTSSEEEEEEETTEEEEEEE--
T ss_pred CCcchhhCeeeecCceEEEEEecC
Confidence 58888999999 678999998775
No 65
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=21.39 E-value=26 Score=20.98 Aligned_cols=8 Identities=13% Similarity=0.073 Sum_probs=4.4
Q ss_pred eeEEEecC
Q 036130 32 AWLIVHPL 39 (205)
Q Consensus 32 ~~lv~rP~ 39 (205)
+|.+++|+
T Consensus 26 ~~w~~~~~ 33 (49)
T PF05545_consen 26 VIWAYRPR 33 (49)
T ss_pred HHHHHccc
Confidence 33346776
No 66
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=20.63 E-value=4.5e+02 Score=21.10 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=30.1
Q ss_pred ceEEEEEEEEEEEecCCCeeeEEEe--cEEEEEEEcCee
Q 036130 61 SRIKADYHLVFSMKNPNKKVPLVIN--NFEILLLYKNDT 97 (205)
Q Consensus 61 ~~l~~~~~~~l~~~NPN~~~~i~Y~--~~~~~v~Y~g~~ 97 (205)
..+...-+.++.++=||+ +.+.+. ..+..++|.|..
T Consensus 35 qklq~~~~~~v~v~RPdk-lr~~~~gd~~~~~~~yDGkt 72 (214)
T PF09865_consen 35 QKLQFSSSGTVTVQRPDK-LRIDRRGDGADREFYYDGKT 72 (214)
T ss_pred ceEEEEEEEEEEEeCCCe-EEEEEEcCCcceEEEECCCE
Confidence 368888899999999996 899884 457889999987
No 67
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.55 E-value=28 Score=26.41 Aligned_cols=24 Identities=17% Similarity=0.494 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHheeeeEEEecC
Q 036130 16 TALLFLFVLISVVSWIAWLIVHPL 39 (205)
Q Consensus 16 ~~l~~l~~~~~i~~li~~lv~rP~ 39 (205)
.++++++.+++.+++++|....|.
T Consensus 11 ii~viflai~~s~~~~~~~s~~P~ 34 (161)
T COG5353 11 IILVIFLAIILSIALFFWKSMKPY 34 (161)
T ss_pred hHHHHHHHHHHHHHHHHhHhcCcc
Confidence 333444455555677888888885
No 68
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=20.53 E-value=66 Score=23.10 Aligned_cols=20 Identities=20% Similarity=0.684 Sum_probs=10.5
Q ss_pred HHHHHHheeeeEEEecCCcE
Q 036130 23 VLISVVSWIAWLIVHPLCPV 42 (205)
Q Consensus 23 ~~~~i~~li~~lv~rP~~P~ 42 (205)
.++.+.+.+.|.+.++..|.
T Consensus 13 ~~~~~~~~vt~~l~~~~~p~ 32 (111)
T PF09677_consen 13 AALLLSAWVTWLLASQPQPR 32 (111)
T ss_pred HHHHHHHHHHHHHHhcCCCc
Confidence 33333345566666655664
No 69
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.48 E-value=27 Score=22.30 Aligned_cols=10 Identities=10% Similarity=0.252 Sum_probs=6.6
Q ss_pred eeeEEEecCC
Q 036130 31 IAWLIVHPLC 40 (205)
Q Consensus 31 i~~lv~rP~~ 40 (205)
++|.++||+.
T Consensus 25 vi~~ayr~~~ 34 (60)
T COG4736 25 VIYFAYRPGK 34 (60)
T ss_pred HHHHHhcccc
Confidence 4566788863
No 70
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=20.44 E-value=33 Score=24.63 Aligned_cols=16 Identities=38% Similarity=0.771 Sum_probs=8.5
Q ss_pred eeeeEEEecC--CcEEEE
Q 036130 30 WIAWLIVHPL--CPVFTV 45 (205)
Q Consensus 30 li~~lv~rP~--~P~f~v 45 (205)
+++||++-=+ .|.|.+
T Consensus 11 li~~Lv~~~r~~~~vf~i 28 (108)
T PF12321_consen 11 LIFWLVFVDRRGLPVFEI 28 (108)
T ss_pred HHHHHHHccccCceEEEE
Confidence 5667654333 366644
No 71
>PF12202 OSR1_C: Oxidative-stress-responsive kinase 1 C terminal; InterPro: IPR024678 Oxidative-stress-responsive kinase 1 (OSR1) is involved in the signalling cascade which activates Na/K/2Cl co-transporter during osmotic stress. This entry represents the CCT domain found in OSR1, STE20/SPS1-related kinase and in WNK activators []. This domain is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue F that may be functionally important. ; PDB: 2V3S_A 2LRU_A.
Probab=20.08 E-value=1.9e+02 Score=16.59 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=11.4
Q ss_pred EEEEEEEecCCCeeeEEEe
Q 036130 67 YHLVFSMKNPNKKVPLVIN 85 (205)
Q Consensus 67 ~~~~l~~~NPN~~~~i~Y~ 85 (205)
+++.|+++||.++-+ .|.
T Consensus 1 i~l~Lrv~d~kK~~~-k~k 18 (38)
T PF12202_consen 1 INLRLRVRDPKKRKG-KHK 18 (38)
T ss_dssp EEEEEEEC-TTSSSS-S--
T ss_pred CcEEEEEeccccccC-ccc
Confidence 468899999998544 553
Done!