Query 036130
Match_columns 205
No_of_seqs 126 out of 777
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 16:32:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.3 1E-05 3.4E-10 62.1 11.9 101 39-154 43-144 (174)
2 1xo8_A AT1G01470; structural g 98.1 5.4E-06 1.8E-10 62.2 6.0 103 39-156 20-123 (151)
3 3but_A Uncharacterized protein 98.0 0.00016 5.6E-09 53.1 12.4 73 63-138 16-88 (136)
4 2knc_B Integrin beta-3; transm 36.4 16 0.00053 23.7 1.6 19 16-34 15-33 (79)
5 3p5s_A CD38 molecule; cyclic A 33.5 8.8 0.0003 31.0 0.0 35 5-40 3-37 (278)
6 2k9j_B Integrin beta-3; transm 29.4 31 0.0011 19.5 1.9 18 16-33 14-31 (43)
7 2l6w_A Beta-type platelet-deri 31.4 15 0.00051 20.4 0.0 15 30-44 25-39 (39)
8 1nro_R Receptor based peptide 25.2 17 0.00059 17.8 0.2 11 71-81 6-16 (27)
9 1nrp_R Receptor based peptide 24.7 12 0.00041 18.2 -0.4 12 71-82 6-17 (26)
10 2kj1_A BM2 protein; cytoplasmi 23.6 17 0.00059 23.0 0.1 16 63-78 6-21 (89)
11 2yev_C CAA3-type cytochrome ox 28.3 18 0.00062 22.2 0.0 26 27-52 13-38 (66)
12 1ny7_1 Cowpea mosaic virus, sm 21.5 2.1E+02 0.0073 21.4 5.7 42 66-112 143-184 (189)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.31 E-value=1e-05 Score=62.06 Aligned_cols=101 Identities=19% Similarity=0.172 Sum_probs=78.3
Q ss_pred CCcEEEEEEEEEeeEeeCCCCCceEEEEEEEEEEEecCCCeeeEEEecEEEEEEEcCeeeeeeeeeccceeecCCCeeEE
Q 036130 39 LCPVFTVSSFTVSNLTLSNNNDSRIKADYHLVFSMKNPNKKVPLVINNFEILLLYKNDTVLIQTWITEAVSLEKMSQKNW 118 (205)
Q Consensus 39 ~~P~f~v~s~~l~~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~~lg~~~~~p~f~q~~~~~~~~ 118 (205)
+.|++++.++++.+++.. ...+.+.++++|||. +.+.+..++..+.-.|.. ++++..-.++..++++++.+
T Consensus 43 ~~PeV~v~~v~~~~~~l~-------~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~-lasG~s~~~~tIpa~g~~~v 113 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD-------GVDYHAKVSVKNPYS-QSIPICQISYILKSATRT-IASGTIPDPGSLVGSGTTVL 113 (174)
T ss_dssp CCCEEEEEEEEEEEECSS-------SEEEEEEEEEEECSS-SCCBCCSEEEEEEESSSC-EEEEEESCCCBCCSSEEEEE
T ss_pred CCCEEEEEEeEEeccccc-------eEEEEEEEEEECCCC-CCccccceEEEEEECCEE-EEEEecCCCceECCCCcEEE
Confidence 689999999999887553 478999999999997 899999999999999999 99998834589999999999
Q ss_pred EEEEeeCcCccCChhhHHHhhcccc-CceEEEEEEEE
Q 036130 119 SPEFPRDFGEPLHGREFNEIGKDWS-KRVVSFDVKMK 154 (205)
Q Consensus 119 ~~~l~~~~~~~l~~~~~~~l~~d~~-~g~v~l~v~v~ 154 (205)
.+.+... - ....++.+++. .+.++.++++.
T Consensus 114 ~Vpv~v~-~-----~~l~~~~~~l~~~~~i~Y~L~g~ 144 (174)
T 1yyc_A 114 DVPVKVA-Y-----SIAVSLMKDMCTDWDIDYQLDIG 144 (174)
T ss_dssp EEEEEES-H-----HHHHHTCCCCCSSEEECEEEEEE
T ss_pred EEEEEEE-H-----HHHHHHHHhcCCCCccceEEEEE
Confidence 9887765 1 12233344543 34465555543
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.08 E-value=5.4e-06 Score=62.22 Aligned_cols=103 Identities=11% Similarity=0.117 Sum_probs=76.2
Q ss_pred CCcEEEEEEEEEeeEeeCCCCCceEEEEEEEEEEEecCCCeeeEEEecEEEEEEEcCeeeeeeeeeccceeecCCCeeEE
Q 036130 39 LCPVFTVSSFTVSNLTLSNNNDSRIKADYHLVFSMKNPNKKVPLVINNFEILLLYKNDTVLIQTWITEAVSLEKMSQKNW 118 (205)
Q Consensus 39 ~~P~f~v~s~~l~~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~~lg~~~~~p~f~q~~~~~~~~ 118 (205)
+.|++++.++++.+++. ....+.+.++++|||. ..+.+..++..+.-.|.. ++++..-.++..++++++.+
T Consensus 20 ~~P~v~v~~v~~~~~~~-------~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~-lasG~~~~~~~ipa~g~~~v 90 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR-------DSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGRE-IGKGKIPDPGSLKAKDMTAL 90 (151)
T ss_dssp CSCCCBCSEEEECCCTT-------TEECEEEEEEEECSSS-SCCCCEEEEEEEESSSSC-EEEEEEEECCCCSSSSEEEE
T ss_pred CCCEEEEEEeEEeccCc-------ceeEEEEEEEEECCCC-CCcccccEEEEEEECCEE-EEEEecCCCcEECCCCcEEE
Confidence 67999999998876533 3578999999999997 899999999999999999 99988834588999999988
Q ss_pred EEEEeeCcCccCChhhHHHhhccc-cCceEEEEEEEEEE
Q 036130 119 SPEFPRDFGEPLHGREFNEIGKDW-SKRVVSFDVKMKIE 156 (205)
Q Consensus 119 ~~~l~~~~~~~l~~~~~~~l~~d~-~~g~v~l~v~v~~~ 156 (205)
.+.+... . . ...++..+. ..+.++.++++...
T Consensus 91 ~vpv~v~-~----~-~l~~~~~~l~~~~~i~Y~l~g~l~ 123 (151)
T 1xo8_A 91 DIPVVVP-Y----S-ILFNLARDVGVDWDIDYELQIGLT 123 (151)
T ss_dssp EECCCEE-H----H-HHHHHHHHHHHHSEEEEEEEEEEE
T ss_pred EEEEEEE-H----H-HHHHHHHhcccCCcccEEEEEEEE
Confidence 8776654 1 1 122222332 34566666655543
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.99 E-value=0.00016 Score=53.11 Aligned_cols=73 Identities=11% Similarity=0.181 Sum_probs=59.4
Q ss_pred EEEEEEEEEEEecCCCeeeEEEecEEEEEEEcCeeeeeeeeeccceeecCCCeeEEEEEEeeCcCccCChhhHHHh
Q 036130 63 IKADYHLVFSMKNPNKKVPLVINNFEILLLYKNDTVLIQTWITEAVSLEKMSQKNWSPEFPRDFGEPLHGREFNEI 138 (205)
Q Consensus 63 l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~~lg~~~~~p~f~q~~~~~~~~~~~l~~~~~~~l~~~~~~~l 138 (205)
-...+.+.+++.|||. +.+.++.+...++..|.. +|.+.....+..++.+.+.+.+.+..+ ...+.+....-+
T Consensus 16 ~~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~-la~G~s~~~~~I~~~g~~~v~v~~~i~-~~~l~~~~~~hi 88 (136)
T 3but_A 16 SQTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVK-VADGYENSPVTVKPASATTLKFSLRLN-NSFLREWWVTHI 88 (136)
T ss_dssp SEEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEE-EEEEEECCCEEECTTCEEEEEEEEEEE-HHHHTTHHHHHH
T ss_pred cEEEEEEEEEEeCCCC-cceeeeceEEEEEECCEE-EEeeeecCceEECCCCcEEEEEEEEEc-hHHhHHHHHHHh
Confidence 3688999999999997 999999999999999999 999875378999999988888888876 444443333333
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=36.35 E-value=16 Score=23.69 Aligned_cols=19 Identities=16% Similarity=0.450 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHheeeeE
Q 036130 16 TALLFLFVLISVVSWIAWL 34 (205)
Q Consensus 16 ~~l~~l~~~~~i~~li~~l 34 (205)
..+++.++++|++++++|-
T Consensus 15 ~gvi~gilliGllllliwk 33 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556777777666663
No 5
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=33.50 E-value=8.8 Score=31.02 Aligned_cols=35 Identities=11% Similarity=0.205 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHheeeeEEEecCC
Q 036130 5 SQCFHFVRRLITALLFLFVLISVVSWIAWLIVHPLC 40 (205)
Q Consensus 5 ~~c~~~~~~~~~~l~~l~~~~~i~~li~~lv~rP~~ 40 (205)
.|| .--+++|+.++++++++.++++++-+.+.|+.
T Consensus 3 ~~~-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 37 (278)
T 3p5s_A 3 DCC-TPRKKLCWCVLLFFLVAGITGGAIGIYKWHYS 37 (278)
T ss_dssp ------------------------------------
T ss_pred CCC-cCceEEeehHHHHHHHHHHHhheeeEEeccCC
Confidence 355 44555666555444444433444444455553
No 6
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=29.40 E-value=31 Score=19.48 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHheeee
Q 036130 16 TALLFLFVLISVVSWIAW 33 (205)
Q Consensus 16 ~~l~~l~~~~~i~~li~~ 33 (205)
..+++.++++|++.+++|
T Consensus 14 ~gvi~~ivliGl~lLliw 31 (43)
T 2k9j_B 14 LSVMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555677777776666
No 7
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=31.36 E-value=15 Score=20.42 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=7.8
Q ss_pred eeeeEEEecCCcEEE
Q 036130 30 WIAWLIVHPLCPVFT 44 (205)
Q Consensus 30 li~~lv~rP~~P~f~ 44 (205)
+|+..+..-++|+|+
T Consensus 25 LIiLi~~w~qKPrYe 39 (39)
T 2l6w_A 25 LIILIMLWQKKPRYE 39 (39)
Confidence 344444445667763
No 8
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=25.21 E-value=17 Score=17.81 Aligned_cols=11 Identities=45% Similarity=0.839 Sum_probs=7.8
Q ss_pred EEEecCCCeee
Q 036130 71 FSMKNPNKKVP 81 (205)
Q Consensus 71 l~~~NPN~~~~ 81 (205)
+..+|||.+..
T Consensus 6 fllrnpndkye 16 (27)
T 1nro_R 6 FLLRNPNDKYE 16 (27)
T ss_pred ccccCCCcccC
Confidence 35689998744
No 9
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=24.69 E-value=12 Score=18.20 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=8.3
Q ss_pred EEEecCCCeeeE
Q 036130 71 FSMKNPNKKVPL 82 (205)
Q Consensus 71 l~~~NPN~~~~i 82 (205)
+..+|||.|..-
T Consensus 6 fllrnpndkyep 17 (26)
T 1nrp_R 6 FLLRNPNDKYEP 17 (26)
T ss_pred hhhcCCCcccCc
Confidence 456899987543
No 10
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=23.59 E-value=17 Score=23.00 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=3.6
Q ss_pred EEEEEEEEEEEecCCC
Q 036130 63 IKADYHLVFSMKNPNK 78 (205)
Q Consensus 63 l~~~~~~~l~~~NPN~ 78 (205)
+.-..++.++++|||+
T Consensus 6 ikrgv~lki~ir~pnk 21 (89)
T 2kj1_A 6 IKRGVNMKIRIKGPNK 21 (89)
T ss_dssp ------------CCCH
T ss_pred hhccCceEEEecCCCH
Confidence 3445678899999997
No 11
>2yev_C CAA3-type cytochrome oxidase subunit IV; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=28.33 E-value=18 Score=22.17 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=19.0
Q ss_pred HHheeeeEEEecCCcEEEEEEEEEee
Q 036130 27 VVSWIAWLIVHPLCPVFTVSSFTVSN 52 (205)
Q Consensus 27 i~~li~~lv~rP~~P~f~v~s~~l~~ 52 (205)
++..++|+.++||.-..+=+++.+.-
T Consensus 13 lVt~~~Yl~lnPR~late~e~~DLr~ 38 (66)
T 2yev_C 13 LVTLFFYLILNPRVLTTEGETFDLRF 38 (66)
Confidence 45668899999998777666666544
No 12
>1ny7_1 Cowpea mosaic virus, small (S) subunit; comovirus, viral coat protein, cowpea mosaic virus (CPMV), icosahedral virus; 3.00A {Cowpea mosaic virus} SCOP: b.121.4.2 PDB: 2bfu_S
Probab=21.51 E-value=2.1e+02 Score=21.43 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=27.5
Q ss_pred EEEEEEEEecCCCeeeEEEecEEEEEEEcCeeeeeeeeeccceeecC
Q 036130 66 DYHLVFSMKNPNKKVPLVINNFEILLLYKNDTVLIQTWITEAVSLEK 112 (205)
Q Consensus 66 ~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~~lg~~~~~p~f~q~~ 112 (205)
.|-+.+.+.||.. |+-+++...++....+|-..++|||..+.
T Consensus 143 sw~L~~~i~Np~Q-----~~~f~v~~~~~~dfe~AGn~lmpPf~l~~ 184 (189)
T 1ny7_1 143 TWYLECVATNPRQ-----IQQFEVNMRFDPNFRVAGNILMPPFPLST 184 (189)
T ss_dssp CCEEEEEESCTTT-----EEEEEEEEEECTTCEEEEEEECCCEECCC
T ss_pred eEEEEEEecCccc-----eEEEEEEeEECCCeEEeccEEcCCccCCC
Confidence 5778888888886 44455555565443255445559998876
Done!