BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036132
(437 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 560 bits (1443), Expect = e-160, Method: Compositional matrix adjust.
Identities = 275/414 (66%), Positives = 330/414 (79%), Gaps = 3/414 (0%)
Query: 24 QTSFRPKALLLPVTKDASTLQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYK 83
Q SFRP AL++PV KDASTLQYVT INQRTPLV + +DLGG+FLWVDCDQ YVSS+Y+
Sbjct: 1 QPSFRPSALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYR 60
Query: 84 PVRCRSAQCNLARSKSCVQSCFSPPRPGCNNDTCAHLPDNTITNTGTSGELSTDIVSIQS 143
PVRCR++QC+L+ S +C CF+ PRPGCNN+TC P+N + NT T GE++ D+VS++S
Sbjct: 61 PVRCRTSQCSLSGSIAC-GDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVES 119
Query: 144 TDGKNLGRVVSVPNLAFACAATFLLEGLASGVKGMAGLGRTRISLPSQFSAAFSFDRKFA 203
TDG + GRVV+VP F+CA T LL+ LASGV GMAGLGRTRI+LPSQF++AFSF RKFA
Sbjct: 120 TDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFA 179
Query: 204 ICLSSSSRVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFI 263
+CLS S+ N V+ FG+ PY FLP I K+L YTPL+ NPVST+ +GEPS EYFI
Sbjct: 180 MCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFI 239
Query: 264 GVKSIKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVA--N 321
GVKSIKIN V LNTSLLSI G+GGTKIST+NPYTVL TSIY A+ AF+KE A N
Sbjct: 240 GVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARN 299
Query: 322 IPRVTPVAPFGACFNSTFVGSTRVGPAVPQIDLVLQSNTVIWRIFGANSMVQVRDDVLCL 381
I RV VAPFGACF++ + STR+GP+VP IDLVLQS +V+W I G+NSMV + D+V+CL
Sbjct: 300 ITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCL 359
Query: 382 GFVDGGVNPRTSIVIGGHQLEDNLLQFDLATSRLGFSSSLLFHQTTCANFNFTS 435
G VDGG N RTSIVIGGHQLEDNL+QFDLATSR+GFS +LL +TTCANFNFTS
Sbjct: 360 GVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANFNFTS 413
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 558 bits (1439), Expect = e-159, Method: Compositional matrix adjust.
Identities = 274/412 (66%), Positives = 329/412 (79%), Gaps = 3/412 (0%)
Query: 26 SFRPKALLLPVTKDASTLQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPV 85
SFRP AL++PV KDASTLQYVT INQRTPLV + +DLGG+FLWVDCDQ YVSS+Y+PV
Sbjct: 3 SFRPSALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPV 62
Query: 86 RCRSAQCNLARSKSCVQSCFSPPRPGCNNDTCAHLPDNTITNTGTSGELSTDIVSIQSTD 145
RCR++QC+L+ S +C CF+ PRPGCNN+TC P+N + NT T GE++ D+VS++STD
Sbjct: 63 RCRTSQCSLSGSIAC-GDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTD 121
Query: 146 GKNLGRVVSVPNLAFACAATFLLEGLASGVKGMAGLGRTRISLPSQFSAAFSFDRKFAIC 205
G + GRVV+VP F+CA T LL+ LASGV GMAGLGRTRI+LPSQF++AFSF RKFA+C
Sbjct: 122 GSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMC 181
Query: 206 LSSSSRVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIGV 265
LS S+ N V+ FG+ PY FLP I K+L YTPL+ NPVST+ +GEPS EYFIGV
Sbjct: 182 LSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGV 241
Query: 266 KSIKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVA--NIP 323
KSIKIN V LNTSLLSI G+GGTKIST+NPYTVL TSIY A+ AF+KE A NI
Sbjct: 242 KSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNIT 301
Query: 324 RVTPVAPFGACFNSTFVGSTRVGPAVPQIDLVLQSNTVIWRIFGANSMVQVRDDVLCLGF 383
RV VAPFGACF++ + STR+GP+VP IDLVLQS +V+W I G+NSMV + D+V+CLG
Sbjct: 302 RVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGV 361
Query: 384 VDGGVNPRTSIVIGGHQLEDNLLQFDLATSRLGFSSSLLFHQTTCANFNFTS 435
VDGG N RTSIVIGGHQLEDNL+QFDLATSR+GFS +LL +TTCANFNFTS
Sbjct: 362 VDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANFNFTS 413
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 288 bits (737), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 167/412 (40%), Positives = 236/412 (57%), Gaps = 27/412 (6%)
Query: 32 LLLPVTKDASTLQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQ 91
++LPV D ST + + +RTPL+ V V +DL G LWV+C+Q Y S +Y+ C S Q
Sbjct: 10 VVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQ 69
Query: 92 CNLARSKSCVQSCFSPPRPGCNNDTCAHLPDNTITNTGTSGELSTDIVSIQSTDG--KNL 149
C+ A + C+ SC + RPGC+ +TC + N IT GEL D+++I +T G + L
Sbjct: 70 CSRANTHQCL-SCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQL 128
Query: 150 GRVVSVPNLAFACAATFLLE-GLASGVKGMAGLGRTRISLPSQFSAAFSFDRKFAICLSS 208
G +V+VP F+CA +FL++ GL +G+AGLG ISLP+Q ++ F R+F CLS
Sbjct: 129 GPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSR 188
Query: 209 SSRVNGVVFFGDGPYFFLP-RDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIGVKS 267
G + FGD P ++ D L +TPL + +GE Y + V S
Sbjct: 189 YPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTIT--------LQGE----YNVRVNS 236
Query: 268 IKINGNTV-PLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVT 326
I+IN ++V PLN +I GGT IST P+ VL S+Y A + F +++ +V
Sbjct: 237 IRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVK 296
Query: 327 PVAPFGACFNSTFVGSTRVGPAVPQIDLVL-QSNTVIWRIFGANSMVQVRDDVLCLGFVD 385
VAPFG CFNS + A P +DLV+ + N +WRI G + MVQ + V CLG ++
Sbjct: 297 SVAPFGLCFNSNKIN------AYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMN 350
Query: 386 GGVNPRTSIVIGGHQLEDNLLQFDLATSRLGFS-SSLLFHQTTCAN-FNFTS 435
GG+ PR I +G QLE+NL+ FDLA SR+GFS SSL H CA+ FNF +
Sbjct: 351 GGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSSLHSHGVKCADLFNFAN 402
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 181 bits (458), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 141/419 (33%), Positives = 199/419 (47%), Gaps = 55/419 (13%)
Query: 32 LLLPVTKDASTLQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQ 91
+L PVTKD +T Y + LV LD+ G +W C+ G S + C S
Sbjct: 5 VLAPVTKDTATSLYTIPFHDGASLV-----LDVAGLLVWSTCEGG---QSPAEIACSSPT 56
Query: 92 CNLARSKSCVQSCFSPPRPGCNND----TCAHLPDNTITNTGTSGELSTDIVSIQSTDGK 147
C LA + C P P C +D C P N +T +G L + +TDG
Sbjct: 57 CLLANAYP-APGC---PAPSCGSDRHDKPCTAYPSNPVTGACAAGSLFHTRFAANTTDGN 112
Query: 148 NLGRVVSVPNLAFACAATFLLEGLASGVKGMAGLGRTRISLPSQFSAAFSFDRKFAICLS 207
V+V LA ACA + LL L G G+AGL + ++LPSQ ++A KF +CL
Sbjct: 113 KPVSEVNVRVLA-ACAPSKLLASLPRGSTGVAGLAGSGLALPSQVASAQKVPNKFLLCLP 171
Query: 208 SSSRVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIGVKS 267
+ GV FG GP LP F++S+ YTPL+ G P+ ++I +S
Sbjct: 172 TGG--PGVAIFGGGP---LPWP-QFTQSMDYTPLVAK---------GGSPA--HYISARS 214
Query: 268 IKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIP---- 323
IK+ VP++ L+ GG +ST PY +L +Y L AF K +A P
Sbjct: 215 IKVENTRVPISERALA-----TGGVMLSTRLPYVLLRRDVYRPLVDAFTKALAAQPANGA 269
Query: 324 ----RVTPVAPFGACFNSTFVGSTRVGPAVPQIDLVLQSNTVIWRIFGANSMVQVRDDVL 379
V PVAPF C+++ +G+ G VP + L L + W + G NSMV V+
Sbjct: 270 PVARAVKPVAPFELCYDTKTLGNNPGGYWVPNVLLELDGGS-DWAMTGKNSMVDVKPGTA 328
Query: 380 CLGF-----VDGGVNPRTSIVIGGHQLEDNLLQFDLATSRLGFSSSLLFHQTTCANFNF 433
C+ F VD G ++++GG Q+ED +L FD+ RLGF L H T C++FNF
Sbjct: 329 CVAFVEMKGVDAGDGSAPAVILGGAQMEDFVLDFDMEKKRLGFLR--LPHFTGCSSFNF 385
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 135/417 (32%), Positives = 194/417 (46%), Gaps = 55/417 (13%)
Query: 32 LLLPVTKDASTLQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQ 91
+L PVTKD +T Y + LV LD+ G +W CD G + + C S
Sbjct: 3 VLAPVTKDPATSLYTIPFHDGASLV-----LDVAGPLVWSTCDGGQPPAE---IPCSSPT 54
Query: 92 CNLARSKSCVQSCFSPPRPGCNNDT----CAHLPDNTITNTGTSGELSTDIVSIQSTDGK 147
C LA + C P P C +D C P N ++ +G LS +TDG
Sbjct: 55 CLLANAYP-APGC---PAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGS 110
Query: 148 NLGRVVSVPNLAFACAATFLLEGLASGVKGMAGLGRTRISLPSQFSAAFSFDRKFAICLS 207
V+V LA ACA + LL L G G+AGL + ++LP+Q ++A +F +CL
Sbjct: 111 KPVSKVNVGVLA-ACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLP 169
Query: 208 SSSRVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIGVKS 267
+ GV FG GP + F++S+ YTPL+ T G S ++I +S
Sbjct: 170 TGGP--GVAIFGGGPVPW----PQFTQSMPYTPLV-----TKGG------SPAHYISARS 212
Query: 268 IKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVAN------ 321
I + VP+ L+ GG +ST PY +L +Y L AF K +A
Sbjct: 213 IVVGDTRVPVPEGALA-----TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGA 267
Query: 322 -IPR-VTPVAPFGACFNSTFVGSTRVGPAVPQIDLVLQSNTVIWRIFGANSMVQVRDDVL 379
+ R V VAPFG C+++ +G+ G AVP + L L + W + G NSMV V+
Sbjct: 268 PVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGS-DWTMTGKNSMVDVKQGTA 326
Query: 380 CLGFVD-----GGVNPRTSIVIGGHQLEDNLLQFDLATSRLGFSSSLLFHQTTCANF 431
C+ FV+ G ++++GG Q+ED +L FD+ RLGFS L H T C
Sbjct: 327 CVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSR--LPHFTGCGGL 381
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 158 bits (400), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 133/417 (31%), Positives = 191/417 (45%), Gaps = 55/417 (13%)
Query: 32 LLLPVTKDASTLQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQ 91
+L PVTKD +T Y + LV LD+ G +W C G + + C S
Sbjct: 3 VLAPVTKDPATSLYTIPFHDGASLV-----LDVAGPLVWSTCKGGQPPAE---IPCSSPT 54
Query: 92 CNLARSKSCVQSCFSPPRPGCNNDT----CAHLPDNTITNTGTSGELSTDIVSIQSTDGK 147
C LA + C P P C +D C P N ++ +G LS +TDG
Sbjct: 55 CLLANAYP-APGC---PAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGS 110
Query: 148 NLGRVVSVPNLAFACAATFLLEGLASGVKGMAGLGRTRISLPSQFSAAFSFDRKFAICLS 207
V+V LA ACA + LL L G G+AGL + ++LP+Q ++A +F +CL
Sbjct: 111 KPVSKVNVGVLA-ACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLP 169
Query: 208 SSSRVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIGVKS 267
+ GV FG GP + F++S+ YTPL+ T G S ++I +S
Sbjct: 170 TGGP--GVAIFGGGPVPW----PQFTQSMPYTPLV-----TKGG------SPAHYISARS 212
Query: 268 IKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVA------- 320
I + VP+ L+ GG +ST PY +L +Y L AF K +A
Sbjct: 213 IVVGDTRVPVPEGALA-----TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGA 267
Query: 321 -NIPRVTPVAPFGACFNSTFVGSTRVGPAVPQIDLVLQSNTVIWRIFGANSMVQVRDDVL 379
V VAPFG C+++ +G+ G AVP + L L + W + G NSMV V+
Sbjct: 268 PVARAVVAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGS-DWTMTGKNSMVDVKQGTA 326
Query: 380 CLGFVD-----GGVNPRTSIVIGGHQLEDNLLQFDLATSRLGFSSSLLFHQTTCANF 431
C+ FV+ G ++++GG Q+ED +L FD+ RLGFS L H T C
Sbjct: 327 CVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSR--LPHFTGCGGL 381
>pdb|2YGE|A Chain A, E88g-n92l Mutant Of N-term Hsp90 Complexed With
Geldanamycin
Length = 220
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 280 SLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTF 339
+L I G+G TK +N +I N+ +AF++ ++ V+ + FG F S F
Sbjct: 73 KVLEIRDSGIGMTKAELINNLG----TIANSGTKAFMEALSAGADVSMIGQFGVGFYSLF 128
Query: 340 VGSTRV 345
+ + RV
Sbjct: 129 LVADRV 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,551,091
Number of Sequences: 62578
Number of extensions: 516842
Number of successful extensions: 1095
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1061
Number of HSP's gapped (non-prelim): 12
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)