Query 036132
Match_columns 437
No_of_seqs 128 out of 1136
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 09:45:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05489 xylanase_inhibitor_I_l 100.0 3.6E-57 7.8E-62 453.2 37.8 358 51-421 2-362 (362)
2 PLN03146 aspartyl protease fam 100.0 3.5E-56 7.6E-61 455.5 40.8 331 42-430 82-430 (431)
3 cd05472 cnd41_like Chloroplast 100.0 7.9E-54 1.7E-58 419.9 33.9 295 44-420 1-297 (299)
4 KOG1339 Aspartyl protease [Pos 100.0 1.7E-52 3.8E-57 425.5 33.5 335 41-429 43-397 (398)
5 cd05478 pepsin_A Pepsin A, asp 100.0 1.5E-50 3.3E-55 399.9 29.3 307 35-419 2-317 (317)
6 cd05490 Cathepsin_D2 Cathepsin 100.0 2.6E-50 5.7E-55 399.5 29.6 308 41-419 3-325 (325)
7 cd06096 Plasmepsin_5 Plasmepsi 100.0 4.1E-50 8.8E-55 398.2 29.5 301 43-429 2-326 (326)
8 cd05486 Cathespin_E Cathepsin 100.0 4.6E-50 9.9E-55 396.3 28.1 301 45-419 1-316 (316)
9 cd05488 Proteinase_A_fungi Fun 100.0 1.1E-49 2.3E-54 394.3 28.8 309 34-419 1-320 (320)
10 cd05477 gastricsin Gastricsins 100.0 2.9E-49 6.3E-54 390.9 30.7 304 42-419 1-317 (318)
11 PTZ00165 aspartyl protease; Pr 100.0 2.4E-49 5.3E-54 407.5 31.0 313 32-421 109-447 (482)
12 cd05476 pepsin_A_like_plant Ch 100.0 2.4E-49 5.2E-54 381.6 29.0 261 44-420 1-263 (265)
13 cd06098 phytepsin Phytepsin, a 100.0 4.4E-49 9.6E-54 389.3 31.0 302 34-419 1-317 (317)
14 cd05475 nucellin_like Nucellin 100.0 6.2E-49 1.3E-53 380.3 30.4 265 43-420 1-271 (273)
15 cd05485 Cathepsin_D_like Cathe 100.0 8.7E-49 1.9E-53 389.1 29.7 312 35-419 3-329 (329)
16 PTZ00013 plasmepsin 4 (PM4); P 100.0 4.2E-48 9E-53 394.8 31.0 311 31-421 126-449 (450)
17 cd05487 renin_like Renin stimu 100.0 4.4E-48 9.5E-53 383.7 29.5 306 41-419 5-325 (326)
18 PTZ00147 plasmepsin-1; Provisi 100.0 3.9E-48 8.5E-53 395.8 29.9 312 30-421 126-450 (453)
19 cd05473 beta_secretase_like Be 100.0 1E-46 2.2E-51 379.4 30.4 321 43-431 2-350 (364)
20 cd05474 SAP_like SAPs, pepsin- 100.0 2.6E-46 5.7E-51 365.7 26.3 277 43-419 1-294 (295)
21 cd06097 Aspergillopepsin_like 100.0 8.5E-45 1.8E-49 352.3 25.3 267 45-419 1-278 (278)
22 cd05471 pepsin_like Pepsin-lik 100.0 2.6E-42 5.7E-47 334.4 28.3 274 45-419 1-283 (283)
23 PF00026 Asp: Eukaryotic aspar 100.0 1.9E-43 4.2E-48 348.2 19.4 303 44-419 1-316 (317)
24 PF14543 TAXi_N: Xylanase inhi 100.0 5.1E-29 1.1E-33 222.6 15.2 159 45-220 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 5.9E-26 1.3E-30 202.4 15.2 158 260-419 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.8 1.4E-18 3E-23 144.4 11.5 107 47-181 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.6 0.0002 4.4E-09 57.1 7.1 92 44-182 2-93 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.4 0.022 4.8E-07 48.0 8.6 101 34-182 2-102 (121)
29 PF13650 Asp_protease_2: Aspar 95.1 0.12 2.7E-06 40.2 7.7 24 47-72 1-24 (90)
30 cd05479 RP_DDI RP_DDI; retrope 92.2 1.5 3.2E-05 37.0 9.5 23 394-416 101-123 (124)
31 cd05479 RP_DDI RP_DDI; retrope 91.9 1.4 3.1E-05 37.1 9.1 30 41-72 13-42 (124)
32 cd05484 retropepsin_like_LTR_2 89.3 0.4 8.7E-06 37.9 3.3 27 45-73 1-27 (91)
33 PF08284 RVP_2: Retroviral asp 88.7 0.59 1.3E-05 40.2 4.0 27 394-420 106-132 (135)
34 PF13975 gag-asp_proteas: gag- 82.0 2.4 5.2E-05 32.0 4.1 31 41-73 5-35 (72)
35 TIGR03698 clan_AA_DTGF clan AA 79.8 13 0.00027 30.4 8.0 23 393-415 85-107 (107)
36 PF13650 Asp_protease_2: Aspar 78.6 2.9 6.4E-05 32.2 3.8 21 291-311 11-31 (90)
37 PF00077 RVP: Retroviral aspar 76.9 3.4 7.4E-05 32.9 3.8 28 44-73 5-32 (100)
38 cd05484 retropepsin_like_LTR_2 74.1 5.3 0.00011 31.4 4.2 30 267-311 4-33 (91)
39 COG3577 Predicted aspartyl pro 72.4 17 0.00037 33.3 7.3 57 14-73 75-132 (215)
40 TIGR02281 clan_AA_DTGA clan AA 71.5 6.9 0.00015 32.8 4.5 36 258-311 9-44 (121)
41 PF13975 gag-asp_proteas: gag- 69.6 9.8 0.00021 28.6 4.5 20 292-311 22-41 (72)
42 cd05483 retropepsin_like_bacte 67.2 11 0.00023 29.3 4.6 21 291-311 15-35 (96)
43 cd06095 RP_RTVL_H_like Retrope 63.2 11 0.00023 29.3 3.8 21 291-311 11-31 (86)
44 cd05482 HIV_retropepsin_like R 60.7 10 0.00022 29.9 3.2 24 48-73 2-25 (87)
45 PF00077 RVP: Retroviral aspar 56.9 14 0.00031 29.2 3.6 16 291-306 18-33 (100)
46 cd06095 RP_RTVL_H_like Retrope 56.5 13 0.00027 29.0 3.1 24 48-73 2-25 (86)
47 PF12384 Peptidase_A2B: Ty3 tr 55.1 55 0.0012 29.0 7.0 21 291-311 47-67 (177)
48 cd05481 retropepsin_like_LTR_1 49.3 15 0.00032 29.2 2.4 22 291-312 12-33 (93)
49 cd05475 nucellin_like Nucellin 47.7 25 0.00053 33.7 4.2 43 32-74 146-194 (273)
50 COG3577 Predicted aspartyl pro 44.8 45 0.00097 30.7 5.0 34 257-308 102-135 (215)
51 COG5550 Predicted aspartyl pro 42.8 18 0.0004 30.3 2.1 20 292-311 29-49 (125)
52 PF09668 Asp_protease: Asparty 40.3 40 0.00087 28.4 3.8 30 266-310 27-56 (124)
53 PF12384 Peptidase_A2B: Ty3 tr 39.6 58 0.0013 28.9 4.7 43 31-73 17-61 (177)
54 PF09668 Asp_protease: Asparty 33.4 63 0.0014 27.3 3.9 29 42-72 22-50 (124)
55 PLN03146 aspartyl protease fam 28.0 59 0.0013 33.6 3.5 43 31-73 267-323 (431)
56 cd05476 pepsin_A_like_plant Ch 27.9 96 0.0021 29.3 4.8 44 30-73 132-192 (265)
57 cd05471 pepsin_like Pepsin-lik 27.7 85 0.0018 29.5 4.4 43 31-74 169-219 (283)
58 cd05472 cnd41_like Chloroplast 26.6 64 0.0014 31.1 3.4 44 30-73 132-187 (299)
59 cd06097 Aspergillopepsin_like 25.4 82 0.0018 30.0 3.8 39 33-73 169-214 (278)
60 cd05474 SAP_like SAPs, pepsin- 25.0 78 0.0017 30.3 3.6 32 43-74 154-195 (295)
61 cd06096 Plasmepsin_5 Plasmepsi 24.8 72 0.0016 31.4 3.3 31 43-73 208-247 (326)
62 PF02160 Peptidase_A3: Caulifl 24.4 4.5E+02 0.0097 24.2 8.0 26 393-419 92-117 (201)
63 TIGR03698 clan_AA_DTGF clan AA 22.5 1E+02 0.0022 25.0 3.3 27 46-72 1-32 (107)
64 PF15409 PH_8: Pleckstrin homo 22.5 2.3E+02 0.0049 22.5 5.0 29 290-318 57-88 (89)
65 KOG1339 Aspartyl protease [Pos 21.6 1.3E+02 0.0029 30.5 4.7 42 31-73 231-284 (398)
No 1
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=3.6e-57 Score=453.16 Aligned_cols=358 Identities=53% Similarity=0.921 Sum_probs=281.3
Q ss_pred ecCCCce-EEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCCCCCCCCCeeeee-cCCCCc
Q 036132 51 QRTPLVP-VKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCNNDTCAHLPD-NTITNT 128 (437)
Q Consensus 51 iGtP~q~-~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~-Y~~d~~ 128 (437)
+|||..+ +.|+|||||+++||+|.+| +|+||+.+.|.++.|....++.|.+.|....+..|.++.|.|... |+ +++
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~-~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~-~gs 79 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAG-HSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPV-TGE 79 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCC-CcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccc-cCc
Confidence 6888888 9999999999999999986 467999999999999887777776556555556788788998765 75 788
Q ss_pred eeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccCCCCCCcceEeecCCCCCchHhhhhhccCCCcceEEecCC
Q 036132 129 GTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLEGLASGVKGMAGLGRTRISLPSQFSAAFSFDRKFAICLSS 208 (437)
Q Consensus 129 ~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~FS~~L~~ 208 (437)
...|++++|+|+|+..+++... .++++++.|||+.......+....|||||||++++|++.||..+...+++||+||.+
T Consensus 80 ~t~G~l~~Dtl~~~~~~g~~~~-~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~~~FS~CL~~ 158 (362)
T cd05489 80 CATGDLTQDVLSANTTDGSNPL-LVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVARKFALCLPS 158 (362)
T ss_pred EeeEEEEEEEEEecccCCCCcc-cceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcCCCcceEEEeCC
Confidence 9999999999999865432111 136889999999886433344458999999999999999998876667899999987
Q ss_pred CCCCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCcceEEeEeeEEEcCEEeccCCccccccccC
Q 036132 209 SSRVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIGVKSIKINGNTVPLNTSLLSIDKEG 288 (437)
Q Consensus 209 ~~~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~g 288 (437)
....+|.|+||+.++.+++++....+.+.|+||+.++. .+.+|.|+|++|+||++.+.+++..+.+...+
T Consensus 159 ~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~----------~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~ 228 (362)
T cd05489 159 SPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPR----------KSGEYYIGVTSIAVNGHAVPLNPTLSANDRLG 228 (362)
T ss_pred CCCCCeeEEECCCchhcccccccccCCccccccccCCC----------CCCceEEEEEEEEECCEECCCCchhccccccC
Confidence 54458999999988633221112347899999997641 24789999999999999998776665544455
Q ss_pred CCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCC-CCCCcccccCCCCCCCCCCCcCeEEEEEecCceEEEEcC
Q 036132 289 VGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPV-APFGACFNSTFVGSTRVGPAVPQIDLVLQSNTVIWRIFG 367 (437)
Q Consensus 289 ~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~C~~~~~~~~~~~~~~~P~l~f~f~g~~~~~~v~~ 367 (437)
.+++||||||++++||+++|++|.++|.+++...+..... ...+.||.............+|+|+|+|+|++++|+|+|
T Consensus 229 ~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~~ 308 (362)
T cd05489 229 PGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFG 308 (362)
T ss_pred CCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEcC
Confidence 6789999999999999999999999999887633332221 123689986543211123579999999986458999999
Q ss_pred CCeEEEeCCCeEEEEEEeCCCCCCCceeechhhccceEEEEeCCCCeEEEeecC
Q 036132 368 ANSMVQVRDDVLCLGFVDGGVNPRTSIVIGGHQLEDNLLQFDLATSRLGFSSSL 421 (437)
Q Consensus 368 ~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~~~ 421 (437)
++|++...++..|+++..........||||+.|||++|+|||++++|||||++|
T Consensus 309 ~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~~ 362 (362)
T cd05489 309 ANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSSL 362 (362)
T ss_pred CceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccCC
Confidence 999998777789999987653223578999999999999999999999999874
No 2
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=3.5e-56 Score=455.47 Aligned_cols=331 Identities=25% Similarity=0.455 Sum_probs=265.6
Q ss_pred CccEEEEEEecCCCceEEEEEEcCCCceeeeCCCC-------------CCCCCcccccCCCccccccccCC-ccccCCCC
Q 036132 42 TLQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQG-------------YVSSSYKPVRCRSAQCNLARSKS-CVQSCFSP 107 (437)
Q Consensus 42 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c-------------~~Sst~~~~~c~~~~c~~~~~~~-c~~~~~~~ 107 (437)
.++|+++|.||||||++.|+|||||+++||+|.+| .+|+||+.+.|.++.|....... |.
T Consensus 82 ~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~------ 155 (431)
T PLN03146 82 GGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCS------ 155 (431)
T ss_pred CccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCC------
Confidence 45899999999999999999999999999999876 37899999999999997654322 32
Q ss_pred CCCCCCCCCCeeeeecCCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccCCCCCCcceEeecCCCCCc
Q 036132 108 PRPGCNNDTCAHLPDNTITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLEGLASGVKGMAGLGRTRIS 187 (437)
Q Consensus 108 ~~~~~~~~~~~~~~~Y~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s 187 (437)
.++.|.|.+.|+ |++.+.|.+++|+|+|++..+ +.++++++.|||++.+.+.+ ....+||||||+++.|
T Consensus 156 -----~~~~c~y~i~Yg-dgs~~~G~l~~Dtltlg~~~~----~~~~v~~~~FGc~~~~~g~f-~~~~~GilGLG~~~~S 224 (431)
T PLN03146 156 -----DENTCTYSYSYG-DGSFTKGNLAVETLTIGSTSG----RPVSFPGIVFGCGHNNGGTF-DEKGSGIVGLGGGPLS 224 (431)
T ss_pred -----CCCCCeeEEEeC-CCCceeeEEEEEEEEeccCCC----CcceeCCEEEeCCCCCCCCc-cCCCceeEecCCCCcc
Confidence 234699999998 998899999999999986421 22368899999999873322 2357999999999999
Q ss_pred hHhhhhhccCCCcceEEecCCCC---CCceeEEEcCCCCCCCCCCcCCC-CceeeeeCccCCCCCCCcccCCCCCcceEE
Q 036132 188 LPSQFSAAFSFDRKFAICLSSSS---RVNGVVFFGDGPYFFLPRDIDFS-KSLFYTPLILNPVSTAGAFFEGEPSAEYFI 263 (437)
Q Consensus 188 ~~~ql~~~~~i~~~FS~~L~~~~---~~~G~i~fGg~d~~~~p~~~~~~-g~i~~~Pl~~~~~~~~~~~~~~~~~~~y~v 263 (437)
+++|+... +.++||+||.+.. ...|.|+||+.. ++. +.+.|+||+.+. .+.+|.|
T Consensus 225 l~sql~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~--------~~~~~~~~~tPl~~~~-----------~~~~y~V 283 (431)
T PLN03146 225 LISQLGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNA--------IVSGSGVVSTPLVSKD-----------PDTFYYL 283 (431)
T ss_pred HHHHhhHh--hCCcEEEECCCCCCCCCCcceEEeCCcc--------ccCCCCceEcccccCC-----------CCCeEEE
Confidence 99999753 4468999997531 347999999853 233 348999998642 2578999
Q ss_pred eEeeEEEcCEEeccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccCCCCCC
Q 036132 264 GVKSIKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTFVGST 343 (437)
Q Consensus 264 ~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 343 (437)
+|++|+||++.+.+++..+. ..+.+++||||||++++||+++|++++++|.+++...+..+....+..||.....
T Consensus 284 ~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--- 358 (431)
T PLN03146 284 TLEAISVGSKKLPYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSD--- 358 (431)
T ss_pred eEEEEEECCEECcCCccccc--cCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCC---
Confidence 99999999999887665543 1234689999999999999999999999999988632222223346789985321
Q ss_pred CCCCCcCeEEEEEecCceEEEEcCCCeEEEeCCCeEEEEEEeCCCCCCCceeechhhccceEEEEeCCCCeEEEeecCcc
Q 036132 344 RVGPAVPQIDLVLQSNTVIWRIFGANSMVQVRDDVLCLGFVDGGVNPRTSIVIGGHQLEDNLLQFDLATSRLGFSSSLLF 423 (437)
Q Consensus 344 ~~~~~~P~l~f~f~g~~~~~~v~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~~~~~ 423 (437)
..+|.|+|+|+| .+++|++++|++...++..|+++.... +.+|||+.|||++|||||++++|||||+
T Consensus 359 ---~~~P~i~~~F~G--a~~~l~~~~~~~~~~~~~~Cl~~~~~~----~~~IlG~~~q~~~~vvyDl~~~~igFa~---- 425 (431)
T PLN03146 359 ---IKLPIITAHFTG--ADVKLQPLNTFVKVSEDLVCFAMIPTS----SIAIFGNLAQMNFLVGYDLESKTVSFKP---- 425 (431)
T ss_pred ---CCCCeEEEEECC--CeeecCcceeEEEcCCCcEEEEEecCC----CceEECeeeEeeEEEEEECCCCEEeeec----
Confidence 468999999987 899999999999877678999887643 3589999999999999999999999997
Q ss_pred ccccCCC
Q 036132 424 HQTTCAN 430 (437)
Q Consensus 424 ~~~~c~~ 430 (437)
.+|.+
T Consensus 426 --~~C~~ 430 (431)
T PLN03146 426 --TDCTK 430 (431)
T ss_pred --CCcCc
Confidence 59976
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=7.9e-54 Score=419.88 Aligned_cols=295 Identities=28% Similarity=0.523 Sum_probs=237.7
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCCCCCCCCCeeeeec
Q 036132 44 QYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCNNDTCAHLPDN 123 (437)
Q Consensus 44 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~Y 123 (437)
+|+++|.||||||++.|+|||||+++||+|.+| |.|.++|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------~~~~i~Y 40 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------CLYQVSY 40 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC----------------------------------------CeeeeEe
Confidence 699999999999999999999999999998533 4588999
Q ss_pred CCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccCCCCCCcceEeecCCCCCchHhhhhhccCCCcceE
Q 036132 124 TITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLEGLASGVKGMAGLGRTRISLPSQFSAAFSFDRKFA 203 (437)
Q Consensus 124 ~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~FS 203 (437)
+ +++.++|++++|+|++++.. .++++.|||+.... ......+||||||+...+++.|+..+ .+++||
T Consensus 41 g-~Gs~~~G~~~~D~v~ig~~~--------~~~~~~Fg~~~~~~--~~~~~~~GilGLg~~~~s~~~ql~~~--~~~~FS 107 (299)
T cd05472 41 G-DGSYTTGDLATDTLTLGSSD--------VVPGFAFGCGHDNE--GLFGGAAGLLGLGRGKLSLPSQTASS--YGGVFS 107 (299)
T ss_pred C-CCceEEEEEEEEEEEeCCCC--------ccCCEEEECCccCC--CccCCCCEEEECCCCcchHHHHhhHh--hcCceE
Confidence 7 88888999999999998641 57789999998773 22336899999999999999998765 347999
Q ss_pred EecCCCC-CCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCcceEEeEeeEEEcCEEeccCCccc
Q 036132 204 ICLSSSS-RVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIGVKSIKINGNTVPLNTSLL 282 (437)
Q Consensus 204 ~~L~~~~-~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~ 282 (437)
+||.+.. ..+|+|+|||+|+ . .|++.|+||+.++. .+.+|.|+|++|+|+++.+..++..
T Consensus 108 ~~L~~~~~~~~G~l~fGg~d~------~--~g~l~~~pv~~~~~----------~~~~y~v~l~~i~vg~~~~~~~~~~- 168 (299)
T cd05472 108 YCLPDRSSSSSGYLSFGAAAS------V--PAGASFTPMLSNPR----------VPTFYYVGLTGISVGGRRLPIPPAS- 168 (299)
T ss_pred EEccCCCCCCCceEEeCCccc------c--CCCceECCCccCCC----------CCCeEEEeeEEEEECCEECCCCccc-
Confidence 9998753 4589999999985 2 68999999987541 2468999999999999988654321
Q ss_pred cccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCCCCCcCeEEEEEecCceE
Q 036132 283 SIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTFVGSTRVGPAVPQIDLVLQSNTVI 362 (437)
Q Consensus 283 ~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~l~f~f~g~~~~ 362 (437)
.....+||||||++++||+++|++|.+++.+.....++......+..||..++.. ...+|+|+|+|++ +++
T Consensus 169 ----~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~----~~~~P~i~f~f~~-g~~ 239 (299)
T cd05472 169 ----FGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFR----SVSVPTVSLHFQG-GAD 239 (299)
T ss_pred ----cCCCCeEEeCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCc----CCccCCEEEEECC-CCE
Confidence 1146899999999999999999999999998764333222222334698765432 2579999999985 489
Q ss_pred EEEcCCCeEEEe-CCCeEEEEEEeCCCCCCCceeechhhccceEEEEeCCCCeEEEeec
Q 036132 363 WRIFGANSMVQV-RDDVLCLGFVDGGVNPRTSIVIGGHQLEDNLLQFDLATSRLGFSSS 420 (437)
Q Consensus 363 ~~v~~~~y~~~~-~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~~ 420 (437)
++|++++|++.. ..+..|+++..... ....+|||+.|||++|+|||++++|||||+.
T Consensus 240 ~~l~~~~y~~~~~~~~~~C~~~~~~~~-~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~ 297 (299)
T cd05472 240 VELDASGVLYPVDDSSQVCLAFAGTSD-DGGLSIIGNVQQQTFRVVYDVAGGRIGFAPG 297 (299)
T ss_pred EEeCcccEEEEecCCCCEEEEEeCCCC-CCCCEEEchHHccceEEEEECCCCEEeEecC
Confidence 999999999843 34678998876532 2346899999999999999999999999973
No 4
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-52 Score=425.46 Aligned_cols=335 Identities=33% Similarity=0.545 Sum_probs=272.5
Q ss_pred CCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCC--------------CCCCcccccCCCccccccccCCccccCCC
Q 036132 41 STLQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGY--------------VSSSYKPVRCRSAQCNLARSKSCVQSCFS 106 (437)
Q Consensus 41 ~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~--------------~Sst~~~~~c~~~~c~~~~~~~c~~~~~~ 106 (437)
..++|+++|.||||||++.|+|||||+++||+|..|. +|++|+.+.|.+..|...... |
T Consensus 43 ~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~-~------ 115 (398)
T KOG1339|consen 43 SSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS-C------ 115 (398)
T ss_pred cccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccC-c------
Confidence 4679999999999999999999999999999987762 578889999998888765432 2
Q ss_pred CCCCCCCCCCCeeeeecCCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccCCCC-CCcceEeecCCCC
Q 036132 107 PPRPGCNNDTCAHLPDNTITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLEGLA-SGVKGMAGLGRTR 185 (437)
Q Consensus 107 ~~~~~~~~~~~~~~~~Y~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~~~~-~~~~GIlGLg~~~ 185 (437)
+.++.|.|.+.|| |++.++|++++|+|++++.+ .+.+++++|||+..+.+.+.. ...+||||||++.
T Consensus 116 -----~~~~~C~y~i~Yg-d~~~~~G~l~~Dtv~~~~~~------~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~ 183 (398)
T KOG1339|consen 116 -----SPNSSCPYSIQYG-DGSSTSGYLATDTVTFGGTT------SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGS 183 (398)
T ss_pred -----ccCCcCceEEEeC-CCCceeEEEEEEEEEEcccc------ccccccEEEEeeecCccccccccccceEeecCCCC
Confidence 2567899999998 99999999999999998742 125678999999998543111 4689999999999
Q ss_pred CchHhhhhhccCCCcceEEecCCCCC---CceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCcceE
Q 036132 186 ISLPSQFSAAFSFDRKFAICLSSSSR---VNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYF 262 (437)
Q Consensus 186 ~s~~~ql~~~~~i~~~FS~~L~~~~~---~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~~y~ 262 (437)
++++.|+....+..++||+||.+... .+|.|+||+.|. .++.+.+.|+||+.+. ..+|.
T Consensus 184 ~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~------~~~~~~l~~tPl~~~~------------~~~y~ 245 (398)
T KOG1339|consen 184 LSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDS------SHYTGSLTYTPLLSNP------------STYYQ 245 (398)
T ss_pred ccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcc------cCcCCceEEEeeccCC------------CccEE
Confidence 99999999887766789999998732 489999999997 4567899999999863 25999
Q ss_pred EeEeeEEEcCEEeccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccCCCCC
Q 036132 263 IGVKSIKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTFVGS 342 (437)
Q Consensus 263 v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~ 342 (437)
|++.+|+|+++. .+++..+..+ ..++|+||||++++||+++|++++++|..... .. ......+..|+......
T Consensus 246 v~l~~I~vgg~~-~~~~~~~~~~---~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~-~~-~~~~~~~~~C~~~~~~~- 318 (398)
T KOG1339|consen 246 VNLDGISVGGKR-PIGSSLFCTD---GGGAIIDSGTSLTYLPTSAYNALREAIGAEVS-VV-GTDGEYFVPCFSISTSG- 318 (398)
T ss_pred EEEeEEEECCcc-CCCcceEecC---CCCEEEECCcceeeccHHHHHHHHHHHHhhee-cc-ccCCceeeecccCCCCc-
Confidence 999999999987 6555555432 37899999999999999999999999998641 00 11123446899875321
Q ss_pred CCCCCCcCeEEEEEecCceEEEEcCCCeEEEeCCCeE-EEEEEeCCCCCCCceeechhhccceEEEEeCC-CCeEEEeec
Q 036132 343 TRVGPAVPQIDLVLQSNTVIWRIFGANSMVQVRDDVL-CLGFVDGGVNPRTSIVIGGHQLEDNLLQFDLA-TSRLGFSSS 420 (437)
Q Consensus 343 ~~~~~~~P~l~f~f~g~~~~~~v~~~~y~~~~~~~~~-C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e-~~rIGfa~~ 420 (437)
..+|.|+|+|.+ ++.|.+++++|++....+.. |+++....... ..||||+.+||+++++||.. ++|||||+.
T Consensus 319 ----~~~P~i~~~f~~-g~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~~~-~~~ilG~~~~~~~~~~~D~~~~~riGfa~~ 392 (398)
T KOG1339|consen 319 ----VKLPDITFHFGG-GAVFSLPPKNYLVEVSDGGGVCLAFFNGMDSG-PLWILGDVFQQNYLVVFDLGENSRVGFAPA 392 (398)
T ss_pred ----ccCCcEEEEECC-CcEEEeCccceEEEECCCCCceeeEEecCCCC-ceEEEchHHhCCEEEEEeCCCCCEEEeccc
Confidence 349999999996 59999999999998876444 99888765432 47999999999999999999 999999986
Q ss_pred CccccccCC
Q 036132 421 LLFHQTTCA 429 (437)
Q Consensus 421 ~~~~~~~c~ 429 (437)
+ .+|.
T Consensus 393 ~----~~c~ 397 (398)
T KOG1339|consen 393 L----TNCS 397 (398)
T ss_pred c----ccCC
Confidence 5 4664
No 5
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.5e-50 Score=399.86 Aligned_cols=307 Identities=20% Similarity=0.224 Sum_probs=240.5
Q ss_pred eEeeCCCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCCCCCC
Q 036132 35 PVTKDASTLQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCNN 114 (437)
Q Consensus 35 Pl~~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~~ 114 (437)
||.+. .+.+|+++|.||||||++.|+|||||+++||+|..|. ...|.....+.++ .++++..
T Consensus 2 ~l~n~-~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-----------~~~c~~~~~f~~~------~Sst~~~ 63 (317)
T cd05478 2 PLTNY-LDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-----------SQACSNHNRFNPR------QSSTYQS 63 (317)
T ss_pred ccccc-cCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-----------cccccccCcCCCC------CCcceee
Confidence 66652 4889999999999999999999999999999997663 2345444434332 2334455
Q ss_pred CCCeeeeecCCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccCCC-CCCcceEeecCCCCC------c
Q 036132 115 DTCAHLPDNTITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLEGL-ASGVKGMAGLGRTRI------S 187 (437)
Q Consensus 115 ~~~~~~~~Y~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~~~-~~~~~GIlGLg~~~~------s 187 (437)
..+.|.+.|+ +++ +.|.+++|+|++++. .++++.|||+........ ....+||||||+... +
T Consensus 64 ~~~~~~~~yg-~gs-~~G~~~~D~v~ig~~---------~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~ 132 (317)
T cd05478 64 TGQPLSIQYG-TGS-MTGILGYDTVQVGGI---------SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATP 132 (317)
T ss_pred CCcEEEEEEC-Cce-EEEEEeeeEEEECCE---------EECCEEEEEEEecCccccccccccceeeeccchhcccCCCC
Confidence 6789999997 765 799999999999875 788999999986532221 234799999998643 4
Q ss_pred hHhhhhhccCCC-cceEEecCCCCCCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCcceEEeEe
Q 036132 188 LPSQFSAAFSFD-RKFAICLSSSSRVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIGVK 266 (437)
Q Consensus 188 ~~~ql~~~~~i~-~~FS~~L~~~~~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~ 266 (437)
+..+|.+++.|+ ++||+||.+....+|+|+|||+|. +++.|++.|+|+.. +.+|.|.++
T Consensus 133 ~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~------~~~~g~l~~~p~~~--------------~~~w~v~l~ 192 (317)
T cd05478 133 VFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDP------SYYTGSLNWVPVTA--------------ETYWQITVD 192 (317)
T ss_pred HHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCH------HHccCceEEEECCC--------------CcEEEEEee
Confidence 778899988884 789999998644679999999986 46789999999964 478999999
Q ss_pred eEEEcCEEeccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCCC
Q 036132 267 SIKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTFVGSTRVG 346 (437)
Q Consensus 267 ~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 346 (437)
+|+|+++.+.... +..+||||||+++++|+++|++|.+++..... . .......|+..
T Consensus 193 ~v~v~g~~~~~~~---------~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~---~--~~~~~~~C~~~--------- 249 (317)
T cd05478 193 SVTINGQVVACSG---------GCQAIVDTGTSLLVGPSSDIANIQSDIGASQN---Q--NGEMVVNCSSI--------- 249 (317)
T ss_pred EEEECCEEEccCC---------CCEEEECCCchhhhCCHHHHHHHHHHhCCccc---c--CCcEEeCCcCc---------
Confidence 9999999875321 35799999999999999999999887754311 1 11112356643
Q ss_pred CCcCeEEEEEecCceEEEEcCCCeEEEeCCCeEEEE-EEeCCCCCCCceeechhhccceEEEEeCCCCeEEEee
Q 036132 347 PAVPQIDLVLQSNTVIWRIFGANSMVQVRDDVLCLG-FVDGGVNPRTSIVIGGHQLEDNLLQFDLATSRLGFSS 419 (437)
Q Consensus 347 ~~~P~l~f~f~g~~~~~~v~~~~y~~~~~~~~~C~~-~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 419 (437)
..+|.|+|+|+| .+++|||++|+... +..|+. +..... ...||||+.|||++|+|||++++|||||+
T Consensus 250 ~~~P~~~f~f~g--~~~~i~~~~y~~~~--~~~C~~~~~~~~~--~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 250 SSMPDVVFTING--VQYPLPPSAYILQD--QGSCTSGFQSMGL--GELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred ccCCcEEEEECC--EEEEECHHHheecC--CCEEeEEEEeCCC--CCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 358999999976 89999999999765 468984 655432 34699999999999999999999999995
No 6
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=2.6e-50 Score=399.50 Aligned_cols=308 Identities=20% Similarity=0.267 Sum_probs=236.5
Q ss_pred CCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCCCCCCCCCeee
Q 036132 41 STLQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCNNDTCAHL 120 (437)
Q Consensus 41 ~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 120 (437)
.+.+|+++|.||||+|+++|+|||||+++||+|..|... +..|.....+.+. .++++....|.|.
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~---------~~~C~~~~~y~~~------~SsT~~~~~~~~~ 67 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLL---------DIACWLHHKYNSS------KSSTYVKNGTEFA 67 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCC---------CccccCcCcCCcc------cCcceeeCCcEEE
Confidence 478999999999999999999999999999999877421 1245544444433 2344555678999
Q ss_pred eecCCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccC-CCCCCcceEeecCCCCCc------hHhhhh
Q 036132 121 PDNTITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLE-GLASGVKGMAGLGRTRIS------LPSQFS 193 (437)
Q Consensus 121 ~~Y~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~~s------~~~ql~ 193 (437)
+.|+ +|+ +.|++++|+|++++. +++++.|||++..... +.....+||||||++..+ +..+|.
T Consensus 68 i~Yg-~G~-~~G~~~~D~v~~g~~---------~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 136 (325)
T cd05490 68 IQYG-SGS-LSGYLSQDTVSIGGL---------QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIM 136 (325)
T ss_pred EEEC-CcE-EEEEEeeeEEEECCE---------EEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHH
Confidence 9997 764 799999999999875 7889999999876322 112457999999987543 556888
Q ss_pred hccCC-CcceEEecCCCC--CCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCcceEEeEeeEEE
Q 036132 194 AAFSF-DRKFAICLSSSS--RVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIGVKSIKI 270 (437)
Q Consensus 194 ~~~~i-~~~FS~~L~~~~--~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v 270 (437)
+++.+ +++||+||.+.. ..+|+|+|||+|. +++.|++.|+|+.. ..+|.|++++|+|
T Consensus 137 ~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~------~~~~g~l~~~~~~~--------------~~~w~v~l~~i~v 196 (325)
T cd05490 137 AQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDP------KYYTGDLHYVNVTR--------------KAYWQIHMDQVDV 196 (325)
T ss_pred hcCCCCCCEEEEEEeCCCCCCCCCEEEECccCH------HHcCCceEEEEcCc--------------ceEEEEEeeEEEE
Confidence 88777 478999998642 2479999999986 56789999999864 4689999999999
Q ss_pred cCEEeccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCCCCCcC
Q 036132 271 NGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTFVGSTRVGPAVP 350 (437)
Q Consensus 271 ~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P 350 (437)
+++...... ...+||||||+++++|++++++|.+++... +... ......|+.. ..+|
T Consensus 197 g~~~~~~~~---------~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~~~-~~~~~~C~~~---------~~~P 253 (325)
T cd05490 197 GSGLTLCKG---------GCEAIVDTGTSLITGPVEEVRALQKAIGAV----PLIQ-GEYMIDCEKI---------PTLP 253 (325)
T ss_pred CCeeeecCC---------CCEEEECCCCccccCCHHHHHHHHHHhCCc----cccC-CCEEeccccc---------ccCC
Confidence 986432211 357999999999999999999998877532 2111 1223467644 3689
Q ss_pred eEEEEEecCceEEEEcCCCeEEEeCC--CeEEE-EEEeCCC--CCCCceeechhhccceEEEEeCCCCeEEEee
Q 036132 351 QIDLVLQSNTVIWRIFGANSMVQVRD--DVLCL-GFVDGGV--NPRTSIVIGGHQLEDNLLQFDLATSRLGFSS 419 (437)
Q Consensus 351 ~l~f~f~g~~~~~~v~~~~y~~~~~~--~~~C~-~~~~~~~--~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 419 (437)
+|+|+|+| ..|+|+|++|++.... ...|+ +++.... .....||||++|||++|+|||++++|||||+
T Consensus 254 ~i~f~fgg--~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 254 VISFSLGG--KVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CEEEEECC--EEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 99999977 8999999999987542 35898 5654321 1235799999999999999999999999995
No 7
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=4.1e-50 Score=398.22 Aligned_cols=301 Identities=20% Similarity=0.282 Sum_probs=228.1
Q ss_pred ccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCC-------------CCCCcccccCCCccccccccCCccccCCCCCC
Q 036132 43 LQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGY-------------VSSSYKPVRCRSAQCNLARSKSCVQSCFSPPR 109 (437)
Q Consensus 43 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~-------------~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~ 109 (437)
++|+++|.||||+|++.|+|||||+++||+|..|. +|++++.+.|.+..|.. .
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~--------------~ 67 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY--------------C 67 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc--------------c
Confidence 47999999999999999999999999999988762 57888888888877742 1
Q ss_pred CCCCCCCCeeeeecCCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccCCCCCCcceEeecCCCCCc-h
Q 036132 110 PGCNNDTCAHLPDNTITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLEGLASGVKGMAGLGRTRIS-L 188 (437)
Q Consensus 110 ~~~~~~~~~~~~~Y~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s-~ 188 (437)
..|.++.|.|.+.|+ +++.+.|.+++|+|+|++..... ......++.|||+............+||||||+...+ .
T Consensus 68 ~~~~~~~~~~~i~Y~-~gs~~~G~~~~D~v~lg~~~~~~--~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~ 144 (326)
T cd06096 68 LSCLNNKCEYSISYS-EGSSISGFYFSDFVSFESYLNSN--SEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGL 144 (326)
T ss_pred CcCCCCcCcEEEEEC-CCCceeeEEEEEEEEeccCCCCc--cccccccEEeccCccccCcccccccceEEEccCCccccc
Confidence 235667899999997 88889999999999998652100 0001125789999886433334568999999997642 1
Q ss_pred ---HhhhhhccCC---CcceEEecCCCCCCceeEEEcCCCCCCCCC----CcCCCCceeeeeCccCCCCCCCcccCCCCC
Q 036132 189 ---PSQFSAAFSF---DRKFAICLSSSSRVNGVVFFGDGPYFFLPR----DIDFSKSLFYTPLILNPVSTAGAFFEGEPS 258 (437)
Q Consensus 189 ---~~ql~~~~~i---~~~FS~~L~~~~~~~G~i~fGg~d~~~~p~----~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~ 258 (437)
..++.++..+ .++||+||++. +|.|+|||+|+.++.+ .....+++.|+|+.. .
T Consensus 145 ~~~~~~l~~~~~~~~~~~~FS~~l~~~---~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~--------------~ 207 (326)
T cd06096 145 PTPIILLFTKRPKLKKDKIFSICLSED---GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR--------------K 207 (326)
T ss_pred CchhHHHHHhcccccCCceEEEEEcCC---CeEEEECccChhhhcccccccccccCCceEEeccC--------------C
Confidence 1123333332 27899999974 7999999999743220 011227899999875 3
Q ss_pred cceEEeEeeEEEcCEEeccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccC
Q 036132 259 AEYFIGVKSIKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNST 338 (437)
Q Consensus 259 ~~y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~ 338 (437)
.+|.|++++|+|+++...... .....+||||||++++||+++|++|.+++
T Consensus 208 ~~y~v~l~~i~vg~~~~~~~~-------~~~~~aivDSGTs~~~lp~~~~~~l~~~~----------------------- 257 (326)
T cd06096 208 YYYYVKLEGLSVYGTTSNSGN-------TKGLGMLVDSGSTLSHFPEDLYNKINNFF----------------------- 257 (326)
T ss_pred ceEEEEEEEEEEcccccceec-------ccCCCEEEeCCCCcccCCHHHHHHHHhhc-----------------------
Confidence 689999999999987611100 11468999999999999999999887644
Q ss_pred CCCCCCCCCCcCeEEEEEecCceEEEEcCCCeEEEeCCCeEEEEEEeCCCCCCCceeechhhccceEEEEeCCCCeEEEe
Q 036132 339 FVGSTRVGPAVPQIDLVLQSNTVIWRIFGANSMVQVRDDVLCLGFVDGGVNPRTSIVIGGHQLEDNLLQFDLATSRLGFS 418 (437)
Q Consensus 339 ~~~~~~~~~~~P~l~f~f~g~~~~~~v~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa 418 (437)
|+|+|.|++ +++++++|++|++......+|+.+.... +.+|||++|||++|+|||++++|||||
T Consensus 258 -----------P~i~~~f~~-g~~~~i~p~~y~~~~~~~~c~~~~~~~~----~~~ILG~~flr~~y~vFD~~~~riGfa 321 (326)
T cd06096 258 -----------PTITIIFEN-NLKIDWKPSSYLYKKESFWCKGGEKSVS----NKPILGASFFKNKQIIFDLDNNRIGFV 321 (326)
T ss_pred -----------CcEEEEEcC-CcEEEECHHHhccccCCceEEEEEecCC----CceEEChHHhcCcEEEEECcCCEEeeE
Confidence 689999985 4899999999998776555566554432 468999999999999999999999999
Q ss_pred ecCccccccCC
Q 036132 419 SSLLFHQTTCA 429 (437)
Q Consensus 419 ~~~~~~~~~c~ 429 (437)
+ .+|+
T Consensus 322 ~------~~C~ 326 (326)
T cd06096 322 E------SNCP 326 (326)
T ss_pred c------CCCC
Confidence 7 4885
No 8
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=4.6e-50 Score=396.25 Aligned_cols=301 Identities=17% Similarity=0.228 Sum_probs=233.1
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCCCCCCCCCeeeeecC
Q 036132 45 YVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCNNDTCAHLPDNT 124 (437)
Q Consensus 45 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~Y~ 124 (437)
|+++|.||||||+++|+|||||+++||+|..| ....|.....+++. .++++....|.|.+.|+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C-----------~~~~C~~~~~y~~~------~SsT~~~~~~~~~i~Yg 63 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYC-----------TSQACTKHNRFQPS------ESSTYVSNGEAFSIQYG 63 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCC-----------CCcccCccceECCC------CCcccccCCcEEEEEeC
Confidence 89999999999999999999999999998755 33356554444433 24455667899999997
Q ss_pred CCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccCCC-CCCcceEeecCCCCCc------hHhhhhhccC
Q 036132 125 ITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLEGL-ASGVKGMAGLGRTRIS------LPSQFSAAFS 197 (437)
Q Consensus 125 ~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~~~-~~~~~GIlGLg~~~~s------~~~ql~~~~~ 197 (437)
++ .+.|.+++|+|++++. +++++.|||+.......+ ....+||||||++..+ +..+|.+++.
T Consensus 64 -~g-~~~G~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~ 132 (316)
T cd05486 64 -TG-SLTGIIGIDQVTVEGI---------TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNL 132 (316)
T ss_pred -Cc-EEEEEeeecEEEECCE---------EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCC
Confidence 66 5899999999999865 788999999876532222 2467999999987544 4677888877
Q ss_pred CC-cceEEecCCCC--CCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCcceEEeEeeEEEcCEE
Q 036132 198 FD-RKFAICLSSSS--RVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIGVKSIKINGNT 274 (437)
Q Consensus 198 i~-~~FS~~L~~~~--~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~ 274 (437)
++ ++||+||.+.. ..+|+|+|||+|+ +++.|++.|+|+.. ..+|.|++++|+|+++.
T Consensus 133 i~~~~FS~~L~~~~~~~~~g~l~fGg~d~------~~~~g~l~~~pi~~--------------~~~w~v~l~~i~v~g~~ 192 (316)
T cd05486 133 VELPMFSVYMSRNPNSADGGELVFGGFDT------SRFSGQLNWVPVTV--------------QGYWQIQLDNIQVGGTV 192 (316)
T ss_pred CCCCEEEEEEccCCCCCCCcEEEEcccCH------HHcccceEEEECCC--------------ceEEEEEeeEEEEecce
Confidence 74 68999998742 3579999999986 56889999999864 47899999999999987
Q ss_pred eccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCCCCCcCeEEE
Q 036132 275 VPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTFVGSTRVGPAVPQIDL 354 (437)
Q Consensus 275 ~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~l~f 354 (437)
+.... ...+||||||+++++|+++++++.+++.... .. ......|... ..+|+|+|
T Consensus 193 ~~~~~---------~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~-----~~-~~~~~~C~~~---------~~~p~i~f 248 (316)
T cd05486 193 IFCSD---------GCQAIVDTGTSLITGPSGDIKQLQNYIGATA-----TD-GEYGVDCSTL---------SLMPSVTF 248 (316)
T ss_pred EecCC---------CCEEEECCCcchhhcCHHHHHHHHHHhCCcc-----cC-CcEEEecccc---------ccCCCEEE
Confidence 64321 2579999999999999999988877664321 11 1112356543 35899999
Q ss_pred EEecCceEEEEcCCCeEEEeC--CCeEEE-EEEeCCC--CCCCceeechhhccceEEEEeCCCCeEEEee
Q 036132 355 VLQSNTVIWRIFGANSMVQVR--DDVLCL-GFVDGGV--NPRTSIVIGGHQLEDNLLQFDLATSRLGFSS 419 (437)
Q Consensus 355 ~f~g~~~~~~v~~~~y~~~~~--~~~~C~-~~~~~~~--~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 419 (437)
+|+| +.++|+|++|++... .+..|+ +++.... ...+.||||+.|||++|+|||.+++|||||+
T Consensus 249 ~f~g--~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 249 TING--IPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EECC--EEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 9987 899999999998652 346897 5654321 1234699999999999999999999999995
No 9
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.1e-49 Score=394.30 Aligned_cols=309 Identities=19% Similarity=0.233 Sum_probs=237.0
Q ss_pred EeEeeCCCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCCCCC
Q 036132 34 LPVTKDASTLQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCN 113 (437)
Q Consensus 34 ~Pl~~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~ 113 (437)
+||.+. .+.+|+++|.||||+|++.|+|||||+++||+|..| .+..|.....++|+ .++++.
T Consensus 1 ~~l~n~-~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C-----------~~~~C~~~~~y~~~------~Sst~~ 62 (320)
T cd05488 1 VPLTNY-LNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKC-----------GSIACFLHSKYDSS------ASSTYK 62 (320)
T ss_pred Cccccc-CCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCC-----------CCcccCCcceECCC------CCccee
Confidence 466653 468899999999999999999999999999999765 33345544444443 234455
Q ss_pred CCCCeeeeecCCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccCC-CCCCcceEeecCCCCCchH---
Q 036132 114 NDTCAHLPDNTITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLEG-LASGVKGMAGLGRTRISLP--- 189 (437)
Q Consensus 114 ~~~~~~~~~Y~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~~-~~~~~~GIlGLg~~~~s~~--- 189 (437)
.+.|.+.+.|+ +++ ++|.+++|++++++. .++++.|||+....+.. .....+||||||++..+..
T Consensus 63 ~~~~~~~~~y~-~g~-~~G~~~~D~v~ig~~---------~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~ 131 (320)
T cd05488 63 ANGTEFKIQYG-SGS-LEGFVSQDTLSIGDL---------TIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIV 131 (320)
T ss_pred eCCCEEEEEEC-Cce-EEEEEEEeEEEECCE---------EECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCC
Confidence 67899999997 665 899999999999765 78899999998763221 1245799999999875533
Q ss_pred ---hhhhhccCC-CcceEEecCCCCCCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCcceEEeE
Q 036132 190 ---SQFSAAFSF-DRKFAICLSSSSRVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIGV 265 (437)
Q Consensus 190 ---~ql~~~~~i-~~~FS~~L~~~~~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l 265 (437)
.+|.+++.| +++||+||.+....+|.|+|||+|+ +++.|++.|+|++. ..+|.|++
T Consensus 132 ~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~------~~~~g~l~~~p~~~--------------~~~w~v~l 191 (320)
T cd05488 132 PPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDE------SRFTGKITWLPVRR--------------KAYWEVEL 191 (320)
T ss_pred CHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCH------HHcCCceEEEeCCc--------------CcEEEEEe
Confidence 356677777 4789999998645689999999986 46788999999974 36899999
Q ss_pred eeEEEcCEEeccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCC
Q 036132 266 KSIKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTFVGSTRV 345 (437)
Q Consensus 266 ~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 345 (437)
++|+||++.+... +..++|||||+++++|+++++++.+++..... ........|.+.
T Consensus 192 ~~i~vg~~~~~~~----------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~-----~~~~~~~~C~~~-------- 248 (320)
T cd05488 192 EKIGLGDEELELE----------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKKS-----WNGQYTVDCSKV-------- 248 (320)
T ss_pred CeEEECCEEeccC----------CCeEEEcCCcccccCCHHHHHHHHHHhCCccc-----cCCcEEeecccc--------
Confidence 9999999877543 25699999999999999999988877643211 011111346543
Q ss_pred CCCcCeEEEEEecCceEEEEcCCCeEEEeCCCeEEEEE-EeCCC--CCCCceeechhhccceEEEEeCCCCeEEEee
Q 036132 346 GPAVPQIDLVLQSNTVIWRIFGANSMVQVRDDVLCLGF-VDGGV--NPRTSIVIGGHQLEDNLLQFDLATSRLGFSS 419 (437)
Q Consensus 346 ~~~~P~l~f~f~g~~~~~~v~~~~y~~~~~~~~~C~~~-~~~~~--~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 419 (437)
..+|.|+|+|++ ++++|||++|++.. +..|+.. ..... ...+.||||+.|||++|+|||.+++|||||+
T Consensus 249 -~~~P~i~f~f~g--~~~~i~~~~y~~~~--~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 249 -DSLPDLTFNFDG--YNFTLGPFDYTLEV--SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred -ccCCCEEEEECC--EEEEECHHHheecC--CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 358999999987 89999999999753 3579854 43221 1134699999999999999999999999995
No 10
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.9e-49 Score=390.87 Aligned_cols=304 Identities=17% Similarity=0.255 Sum_probs=237.9
Q ss_pred CccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCCCCCCCCCeeee
Q 036132 42 TLQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCNNDTCAHLP 121 (437)
Q Consensus 42 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 121 (437)
+.+|+++|.||||||++.|+|||||+++||+|..| ....|.....+.++ .++++..+.|.|++
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C-----------~~~~C~~~~~f~~~------~SsT~~~~~~~~~~ 63 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLC-----------QSQACTNHTKFNPS------QSSTYSTNGETFSL 63 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCC-----------CCccccccCCCCcc------cCCCceECCcEEEE
Confidence 46899999999999999999999999999999766 33356554445443 24455667899999
Q ss_pred ecCCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccCC-CCCCcceEeecCCC------CCchHhhhhh
Q 036132 122 DNTITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLEG-LASGVKGMAGLGRT------RISLPSQFSA 194 (437)
Q Consensus 122 ~Y~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~~-~~~~~~GIlGLg~~------~~s~~~ql~~ 194 (437)
.|+ +++ +.|.+++|++++++. .++++.|||+....... .....+||||||++ ..+++.+|.+
T Consensus 64 ~Yg-~Gs-~~G~~~~D~i~~g~~---------~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~ 132 (318)
T cd05477 64 QYG-SGS-LTGIFGYDTVTVQGI---------IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQ 132 (318)
T ss_pred EEC-CcE-EEEEEEeeEEEECCE---------EEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHh
Confidence 997 765 799999999999865 78899999998763221 22457999999985 3568889999
Q ss_pred ccCC-CcceEEecCCCC-CCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCcceEEeEeeEEEcC
Q 036132 195 AFSF-DRKFAICLSSSS-RVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIGVKSIKING 272 (437)
Q Consensus 195 ~~~i-~~~FS~~L~~~~-~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~ 272 (437)
++.| +++||+||.+.. ..+|.|+|||+|. .++.|++.|+|+.. ..+|.|++++|+|++
T Consensus 133 ~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~------~~~~g~l~~~pv~~--------------~~~w~v~l~~i~v~g 192 (318)
T cd05477 133 QNLLQAPIFSFYLSGQQGQQGGELVFGGVDN------NLYTGQIYWTPVTS--------------ETYWQIGIQGFQING 192 (318)
T ss_pred cCCcCCCEEEEEEcCCCCCCCCEEEEcccCH------HHcCCceEEEecCC--------------ceEEEEEeeEEEECC
Confidence 8888 478999998752 3469999999986 46788999999864 478999999999999
Q ss_pred EEeccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCCCCCcCeE
Q 036132 273 NTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTFVGSTRVGPAVPQI 352 (437)
Q Consensus 273 ~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~l 352 (437)
+.+..... ...+||||||+++++|+++|++|.+++..... ........|... ..+|.|
T Consensus 193 ~~~~~~~~--------~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~-----~~~~~~~~C~~~---------~~~p~l 250 (318)
T cd05477 193 QATGWCSQ--------GCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQD-----QYGQYVVNCNNI---------QNLPTL 250 (318)
T ss_pred EEecccCC--------CceeeECCCCccEECCHHHHHHHHHHhCCccc-----cCCCEEEeCCcc---------ccCCcE
Confidence 88653211 25799999999999999999999988765421 111112356543 358999
Q ss_pred EEEEecCceEEEEcCCCeEEEeCCCeEEE-EEEeCCC---CCCCceeechhhccceEEEEeCCCCeEEEee
Q 036132 353 DLVLQSNTVIWRIFGANSMVQVRDDVLCL-GFVDGGV---NPRTSIVIGGHQLEDNLLQFDLATSRLGFSS 419 (437)
Q Consensus 353 ~f~f~g~~~~~~v~~~~y~~~~~~~~~C~-~~~~~~~---~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 419 (437)
+|+|++ ++++||+++|+... ...|+ ++..... .....||||+.|||++|+|||++++|||||+
T Consensus 251 ~~~f~g--~~~~v~~~~y~~~~--~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~ 317 (318)
T cd05477 251 TFTING--VSFPLPPSAYILQN--NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFAT 317 (318)
T ss_pred EEEECC--EEEEECHHHeEecC--CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeee
Confidence 999987 89999999999864 35786 7764321 1124699999999999999999999999997
No 11
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.4e-49 Score=407.54 Aligned_cols=313 Identities=19% Similarity=0.250 Sum_probs=239.0
Q ss_pred eEEeEeeCCCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCCC
Q 036132 32 LLLPVTKDASTLQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPG 111 (437)
Q Consensus 32 ~~~Pl~~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~ 111 (437)
...||.+ ..+.+|+++|.||||||+++|+|||||+++||||..| .+..|..+..+++++ +++
T Consensus 109 ~~~~l~n-~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C-----------~~~~C~~~~~yd~s~------SST 170 (482)
T PTZ00165 109 LQQDLLN-FHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKEC-----------KSGGCAPHRKFDPKK------SST 170 (482)
T ss_pred cceeccc-ccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhc-----------CcccccccCCCCccc------cCC
Confidence 4566664 3688999999999999999999999999999999765 334565555554431 223
Q ss_pred CCC--CC---CeeeeecCCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccC-CCCCCcceEeecCCCC
Q 036132 112 CNN--DT---CAHLPDNTITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLE-GLASGVKGMAGLGRTR 185 (437)
Q Consensus 112 ~~~--~~---~~~~~~Y~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~ 185 (437)
+.. +. ..+.++|| +| ++.|++++|+|++++. +++++.|||++..... +.....|||||||++.
T Consensus 171 y~~~~~~~~~~~~~i~YG-sG-s~~G~l~~DtV~ig~l---------~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~ 239 (482)
T PTZ00165 171 YTKLKLGDESAETYIQYG-TG-ECVLALGKDTVKIGGL---------KVKHQSIGLAIEESLHPFADLPFDGLVGLGFPD 239 (482)
T ss_pred cEecCCCCccceEEEEeC-CC-cEEEEEEEEEEEECCE---------EEccEEEEEEEeccccccccccccceeecCCCc
Confidence 222 22 25779997 55 5789999999999875 7889999999876322 2234689999999875
Q ss_pred C---------chHhhhhhccCC-CcceEEecCCCCCCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCC
Q 036132 186 I---------SLPSQFSAAFSF-DRKFAICLSSSSRVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEG 255 (437)
Q Consensus 186 ~---------s~~~ql~~~~~i-~~~FS~~L~~~~~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~ 255 (437)
. ++..+|.+++.+ +++||+||.+....+|+|+|||+|+.++ ...+++.|+|++.
T Consensus 240 ~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~----~~~g~i~~~Pv~~------------ 303 (482)
T PTZ00165 240 KDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYT----LEGHKIWWFPVIS------------ 303 (482)
T ss_pred ccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHc----CCCCceEEEEccc------------
Confidence 4 466778888888 4789999987655689999999996321 1146899999975
Q ss_pred CCCcceEEeEeeEEEcCEEeccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCccc
Q 036132 256 EPSAEYFIGVKSIKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACF 335 (437)
Q Consensus 256 ~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~ 335 (437)
..+|.|++++|+|+++.+..... ...+|+||||+++++|++++++|.+++... ..|.
T Consensus 304 --~~yW~i~l~~i~vgg~~~~~~~~--------~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------~~C~ 360 (482)
T PTZ00165 304 --TDYWEIEVVDILIDGKSLGFCDR--------KCKAAIDTGSSLITGPSSVINPLLEKIPLE-------------EDCS 360 (482)
T ss_pred --cceEEEEeCeEEECCEEeeecCC--------ceEEEEcCCCccEeCCHHHHHHHHHHcCCc-------------cccc
Confidence 47899999999999987754211 367999999999999999998888765321 2587
Q ss_pred ccCCCCCCCCCCCcCeEEEEEec---CceEEEEcCCCeEEEe----CCCeEEE-EEEeCCC--CCCCceeechhhccceE
Q 036132 336 NSTFVGSTRVGPAVPQIDLVLQS---NTVIWRIFGANSMVQV----RDDVLCL-GFVDGGV--NPRTSIVIGGHQLEDNL 405 (437)
Q Consensus 336 ~~~~~~~~~~~~~~P~l~f~f~g---~~~~~~v~~~~y~~~~----~~~~~C~-~~~~~~~--~~~~~~ILG~~flr~~y 405 (437)
.. ..+|+|+|+|++ ..++|+++|++|++.. ..+..|+ +++.... ..++.||||++|||++|
T Consensus 361 ~~---------~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy 431 (482)
T PTZ00165 361 NK---------DSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYY 431 (482)
T ss_pred cc---------ccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEE
Confidence 54 368999999986 1358999999999874 2356896 6775432 12357999999999999
Q ss_pred EEEeCCCCeEEEeecC
Q 036132 406 LQFDLATSRLGFSSSL 421 (437)
Q Consensus 406 vvFD~e~~rIGfa~~~ 421 (437)
+|||.+|+|||||+.+
T Consensus 432 ~VFD~~n~rIGfA~a~ 447 (482)
T PTZ00165 432 SIFDRDHMMVGLVPAK 447 (482)
T ss_pred EEEeCCCCEEEEEeec
Confidence 9999999999999863
No 12
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.4e-49 Score=381.63 Aligned_cols=261 Identities=30% Similarity=0.574 Sum_probs=218.8
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCCCCCCCCCeeeeec
Q 036132 44 QYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCNNDTCAHLPDN 123 (437)
Q Consensus 44 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~Y 123 (437)
+|+++|+||||||+++|+|||||+++||+| |.|.++|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------~~~~~~Y 37 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------CSYEYSY 37 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC-------------------------------------------CceEeEe
Confidence 599999999999999999999999999985 2377889
Q ss_pred CCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccCCCCCCcceEeecCCCCCchHhhhhhccCCCcceE
Q 036132 124 TITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLEGLASGVKGMAGLGRTRISLPSQFSAAFSFDRKFA 203 (437)
Q Consensus 124 ~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~FS 203 (437)
+ |++.++|++++|++++++.+ ..++++.|||+..... ......+||||||+...++++||..++ ++||
T Consensus 38 ~-dg~~~~G~~~~D~v~~g~~~-------~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~---~~Fs 105 (265)
T cd05476 38 G-DGSSTSGVLATETFTFGDSS-------VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG---NKFS 105 (265)
T ss_pred C-CCceeeeeEEEEEEEecCCC-------CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc---CeeE
Confidence 7 89999999999999998751 1467899999998743 334578999999999999999998765 7999
Q ss_pred EecCCC--CCCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCcceEEeEeeEEEcCEEeccCCcc
Q 036132 204 ICLSSS--SRVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIGVKSIKINGNTVPLNTSL 281 (437)
Q Consensus 204 ~~L~~~--~~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~ 281 (437)
+||.+. ...+|+|+||++|. . +.+++.|+|++.++. ...+|.|++++|+|+++.+.+++..
T Consensus 106 ~~l~~~~~~~~~G~l~fGg~d~------~-~~~~l~~~p~~~~~~----------~~~~~~v~l~~i~v~~~~~~~~~~~ 168 (265)
T cd05476 106 YCLVPHDDTGGSSPLILGDAAD------L-GGSGVVYTPLVKNPA----------NPTYYYVNLEGISVGGKRLPIPPSV 168 (265)
T ss_pred EEccCCCCCCCCCeEEECCccc------c-cCCCceEeecccCCC----------CCCceEeeeEEEEECCEEecCCchh
Confidence 999874 35689999999996 2 568999999987531 2578999999999999988754433
Q ss_pred ccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCCCCCcCeEEEEEecCce
Q 036132 282 LSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTFVGSTRVGPAVPQIDLVLQSNTV 361 (437)
Q Consensus 282 ~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~l~f~f~g~~~ 361 (437)
..........+||||||++++||+++| |+|+|+|++ +.
T Consensus 169 ~~~~~~~~~~ai~DTGTs~~~lp~~~~-----------------------------------------P~i~~~f~~-~~ 206 (265)
T cd05476 169 FAIDSDGSGGTIIDSGTTLTYLPDPAY-----------------------------------------PDLTLHFDG-GA 206 (265)
T ss_pred cccccCCCCcEEEeCCCcceEcCcccc-----------------------------------------CCEEEEECC-CC
Confidence 322223357899999999999998765 689999985 48
Q ss_pred EEEEcCCCeEEEeCCCeEEEEEEeCCCCCCCceeechhhccceEEEEeCCCCeEEEeec
Q 036132 362 IWRIFGANSMVQVRDDVLCLGFVDGGVNPRTSIVIGGHQLEDNLLQFDLATSRLGFSSS 420 (437)
Q Consensus 362 ~~~v~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~~ 420 (437)
+|.+++++|++....+..|+++..... .+.+|||++|||++|+|||++++|||||++
T Consensus 207 ~~~i~~~~y~~~~~~~~~C~~~~~~~~--~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~ 263 (265)
T cd05476 207 DLELPPENYFVDVGEGVVCLAILSSSS--GGVSILGNIQQQNFLVEYDLENSRLGFAPA 263 (265)
T ss_pred EEEeCcccEEEECCCCCEEEEEecCCC--CCcEEEChhhcccEEEEEECCCCEEeeecC
Confidence 999999999997666789999887632 357999999999999999999999999974
No 13
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=4.4e-49 Score=389.30 Aligned_cols=302 Identities=19% Similarity=0.256 Sum_probs=233.5
Q ss_pred EeEeeCCCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCCCCC
Q 036132 34 LPVTKDASTLQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCN 113 (437)
Q Consensus 34 ~Pl~~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~ 113 (437)
+||++ ..+.+|+++|.||||||+++|+|||||+++||+|..|.. +..|.....++++ .++++.
T Consensus 1 ~~l~n-~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~----------~~~C~~~~~y~~~------~SsT~~ 63 (317)
T cd06098 1 VALKN-YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYF----------SIACYFHSKYKSS------KSSTYK 63 (317)
T ss_pred Ccccc-cCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCC----------CccccccCcCCcc------cCCCcc
Confidence 45665 357899999999999999999999999999999987732 1245544445443 234455
Q ss_pred CCCCeeeeecCCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccC-CCCCCcceEeecCCCCCc-----
Q 036132 114 NDTCAHLPDNTITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLE-GLASGVKGMAGLGRTRIS----- 187 (437)
Q Consensus 114 ~~~~~~~~~Y~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~~s----- 187 (437)
...+.+.+.|+ ++ .+.|.+++|+|++++. +++++.|||++..... ......+||||||+...+
T Consensus 64 ~~~~~~~i~Yg-~G-~~~G~~~~D~v~ig~~---------~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~ 132 (317)
T cd06098 64 KNGTSASIQYG-TG-SISGFFSQDSVTVGDL---------VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAV 132 (317)
T ss_pred cCCCEEEEEcC-Cc-eEEEEEEeeEEEECCE---------EECCEEEEEEEecCCccccccccceeccccccchhhcCCC
Confidence 56778999997 65 4799999999999875 7889999999875321 223467999999987543
Q ss_pred -hHhhhhhccCCC-cceEEecCCCC--CCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCcceEE
Q 036132 188 -LPSQFSAAFSFD-RKFAICLSSSS--RVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFI 263 (437)
Q Consensus 188 -~~~ql~~~~~i~-~~FS~~L~~~~--~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~~y~v 263 (437)
+..+|.+++.++ ++||+||.+.. ..+|+|+|||+|+ +++.|+++|+|++. ..+|.|
T Consensus 133 ~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~------~~~~g~l~~~pv~~--------------~~~w~v 192 (317)
T cd06098 133 PVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDP------KHFKGEHTYVPVTR--------------KGYWQF 192 (317)
T ss_pred CHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccCh------hhcccceEEEecCc--------------CcEEEE
Confidence 455777777774 68999998642 3579999999986 56889999999964 468999
Q ss_pred eEeeEEEcCEEeccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccCCCCCC
Q 036132 264 GVKSIKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTFVGST 343 (437)
Q Consensus 264 ~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 343 (437)
.+++|+|+++.+..... ...+||||||+++++|+++++++. ....|+..
T Consensus 193 ~l~~i~v~g~~~~~~~~--------~~~aivDTGTs~~~lP~~~~~~i~-----------------~~~~C~~~------ 241 (317)
T cd06098 193 EMGDVLIGGKSTGFCAG--------GCAAIADSGTSLLAGPTTIVTQIN-----------------SAVDCNSL------ 241 (317)
T ss_pred EeCeEEECCEEeeecCC--------CcEEEEecCCcceeCCHHHHHhhh-----------------ccCCcccc------
Confidence 99999999987654321 257999999999999998765542 12358754
Q ss_pred CCCCCcCeEEEEEecCceEEEEcCCCeEEEeCC--CeEEE-EEEeCCC--CCCCceeechhhccceEEEEeCCCCeEEEe
Q 036132 344 RVGPAVPQIDLVLQSNTVIWRIFGANSMVQVRD--DVLCL-GFVDGGV--NPRTSIVIGGHQLEDNLLQFDLATSRLGFS 418 (437)
Q Consensus 344 ~~~~~~P~l~f~f~g~~~~~~v~~~~y~~~~~~--~~~C~-~~~~~~~--~~~~~~ILG~~flr~~yvvFD~e~~rIGfa 418 (437)
..+|+|+|+|+| ..++|+|++|++...+ ...|+ +++.... .....||||+.|||++|+|||++++|||||
T Consensus 242 ---~~~P~i~f~f~g--~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA 316 (317)
T cd06098 242 ---SSMPNVSFTIGG--KTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFA 316 (317)
T ss_pred ---ccCCcEEEEECC--EEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeec
Confidence 358999999976 8999999999987543 35897 5654321 123469999999999999999999999999
Q ss_pred e
Q 036132 419 S 419 (437)
Q Consensus 419 ~ 419 (437)
+
T Consensus 317 ~ 317 (317)
T cd06098 317 E 317 (317)
T ss_pred C
Confidence 5
No 14
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=6.2e-49 Score=380.32 Aligned_cols=265 Identities=26% Similarity=0.422 Sum_probs=215.5
Q ss_pred ccEEEEEEecCCCceEEEEEEcCCCceeeeCC-CCCCCCCcccccCCCccccccccCCccccCCCCCCCCCCCCCCeeee
Q 036132 43 LQYVTQINQRTPLVPVKVTLDLGGQFLWVDCD-QGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCNNDTCAHLP 121 (437)
Q Consensus 43 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~-~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 121 (437)
++|+++|.||||||++.|+|||||+++||+|. +| . . | .|.|++
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c-----------~--~--------------------c---~c~~~i 44 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPC-----------T--G--------------------C---QCDYEI 44 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCC-----------C--C--------------------C---cCccEe
Confidence 47999999999999999999999999999984 23 1 1 1 377999
Q ss_pred ecCCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccCC--CCCCcceEeecCCCCCchHhhhhhccCCC
Q 036132 122 DNTITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLEG--LASGVKGMAGLGRTRISLPSQFSAAFSFD 199 (437)
Q Consensus 122 ~Y~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~~--~~~~~~GIlGLg~~~~s~~~ql~~~~~i~ 199 (437)
+|+ |++.+.|++++|+|+++..+++ ..++++.|||+..+.... .....+||||||+++.++++||.+++.++
T Consensus 45 ~Yg-d~~~~~G~~~~D~v~~~~~~~~-----~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~ 118 (273)
T cd05475 45 EYA-DGGSSMGVLVTDIFSLKLTNGS-----RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIK 118 (273)
T ss_pred EeC-CCCceEEEEEEEEEEEeecCCC-----cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcC
Confidence 997 8999999999999999764321 256789999997753221 22468999999999999999999888787
Q ss_pred cceEEecCCCCCCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCcceEEeEeeEEEcCEEeccCC
Q 036132 200 RKFAICLSSSSRVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIGVKSIKINGNTVPLNT 279 (437)
Q Consensus 200 ~~FS~~L~~~~~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~ 279 (437)
++||+||.+. .+|.|+||+.. ++.+++.|+||..++ ...+|.|++.+|+||++.+..
T Consensus 119 ~~Fs~~l~~~--~~g~l~~G~~~--------~~~g~i~ytpl~~~~-----------~~~~y~v~l~~i~vg~~~~~~-- 175 (273)
T cd05475 119 NVIGHCLSSN--GGGFLFFGDDL--------VPSSGVTWTPMRRES-----------QKKHYSPGPASLLFNGQPTGG-- 175 (273)
T ss_pred ceEEEEccCC--CCeEEEECCCC--------CCCCCeeecccccCC-----------CCCeEEEeEeEEEECCEECcC--
Confidence 8899999873 47999999542 356789999998753 146899999999999985431
Q ss_pred ccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCCCCCcCeEEEEEecC
Q 036132 280 SLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTFVGSTRVGPAVPQIDLVLQSN 359 (437)
Q Consensus 280 ~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~l~f~f~g~ 359 (437)
+...+||||||++++||+++| +|+|+|.|++.
T Consensus 176 --------~~~~~ivDTGTt~t~lp~~~y----------------------------------------~p~i~~~f~~~ 207 (273)
T cd05475 176 --------KGLEVVFDSGSSYTYFNAQAY----------------------------------------FKPLTLKFGKG 207 (273)
T ss_pred --------CCceEEEECCCceEEcCCccc----------------------------------------cccEEEEECCC
Confidence 136799999999999998765 37889999862
Q ss_pred --ceEEEEcCCCeEEEeCCCeEEEEEEeCCCC-CCCceeechhhccceEEEEeCCCCeEEEeec
Q 036132 360 --TVIWRIFGANSMVQVRDDVLCLGFVDGGVN-PRTSIVIGGHQLEDNLLQFDLATSRLGFSSS 420 (437)
Q Consensus 360 --~~~~~v~~~~y~~~~~~~~~C~~~~~~~~~-~~~~~ILG~~flr~~yvvFD~e~~rIGfa~~ 420 (437)
+++++|||++|++....+..|++++..... ....||||+.|||++|+|||++++|||||+.
T Consensus 208 ~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~ 271 (273)
T cd05475 208 WRTRLLEIPPENYLIISEKGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRS 271 (273)
T ss_pred CceeEEEeCCCceEEEcCCCCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccC
Confidence 279999999999876666789988865432 2357999999999999999999999999973
No 15
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=8.7e-49 Score=389.09 Aligned_cols=312 Identities=20% Similarity=0.287 Sum_probs=238.8
Q ss_pred eEeeCCCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCCCCCC
Q 036132 35 PVTKDASTLQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCNN 114 (437)
Q Consensus 35 Pl~~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~~ 114 (437)
||++ ..+.+|+++|.||||+|++.|+|||||+++||+|..|.. | +..|.....+.|. .++++..
T Consensus 3 ~~~n-~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~--------~-~~~c~~~~~y~~~------~Sst~~~ 66 (329)
T cd05485 3 PLSN-YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSW--------T-NIACLLHNKYDST------KSSTYKK 66 (329)
T ss_pred ccee-ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCC--------C-CccccCCCeECCc------CCCCeEE
Confidence 5554 457899999999999999999999999999999987731 1 1245443334433 2345566
Q ss_pred CCCeeeeecCCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccC-CCCCCcceEeecCCCCCc------
Q 036132 115 DTCAHLPDNTITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLE-GLASGVKGMAGLGRTRIS------ 187 (437)
Q Consensus 115 ~~~~~~~~Y~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~~s------ 187 (437)
..|.|.+.|+ +++ +.|.+++|++++++. .++++.|||+.+..+. +.....+||||||+...+
T Consensus 67 ~~~~~~i~Y~-~g~-~~G~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p 135 (329)
T cd05485 67 NGTEFAIQYG-SGS-LSGFLSTDTVSVGGV---------SVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVP 135 (329)
T ss_pred CCeEEEEEEC-Cce-EEEEEecCcEEECCE---------EECCEEEEEEEecCCccccccccceEEEcCCccccccCCCC
Confidence 7799999997 765 899999999999875 7889999999765321 122457999999997654
Q ss_pred hHhhhhhccCC-CcceEEecCCCC--CCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCcceEEe
Q 036132 188 LPSQFSAAFSF-DRKFAICLSSSS--RVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIG 264 (437)
Q Consensus 188 ~~~ql~~~~~i-~~~FS~~L~~~~--~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~~y~v~ 264 (437)
+..+|.+++.| +++||+||.+.. ..+|+|+|||+|. .++.|+++|+|+.. +.+|.|.
T Consensus 136 ~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~------~~~~g~l~~~p~~~--------------~~~~~v~ 195 (329)
T cd05485 136 VFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDP------KHYTGNFTYLPVTR--------------KGYWQFK 195 (329)
T ss_pred HHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCH------HHcccceEEEEcCC--------------ceEEEEE
Confidence 45678888877 478999998742 2479999999986 46778999999964 4789999
Q ss_pred EeeEEEcCEEeccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccCCCCCCC
Q 036132 265 VKSIKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTFVGSTR 344 (437)
Q Consensus 265 l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 344 (437)
+++|+++++.+... +..+||||||+++++|+++++++.+++.... .........|+..
T Consensus 196 ~~~i~v~~~~~~~~----------~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~-----~~~~~~~~~C~~~------- 253 (329)
T cd05485 196 MDSVSVGEGEFCSG----------GCQAIADTGTSLIAGPVDEIEKLNNAIGAKP-----IIGGEYMVNCSAI------- 253 (329)
T ss_pred eeEEEECCeeecCC----------CcEEEEccCCcceeCCHHHHHHHHHHhCCcc-----ccCCcEEEecccc-------
Confidence 99999999875421 3579999999999999999999888775421 1111122356543
Q ss_pred CCCCcCeEEEEEecCceEEEEcCCCeEEEeCC--CeEEE-EEEeCCC--CCCCceeechhhccceEEEEeCCCCeEEEee
Q 036132 345 VGPAVPQIDLVLQSNTVIWRIFGANSMVQVRD--DVLCL-GFVDGGV--NPRTSIVIGGHQLEDNLLQFDLATSRLGFSS 419 (437)
Q Consensus 345 ~~~~~P~l~f~f~g~~~~~~v~~~~y~~~~~~--~~~C~-~~~~~~~--~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 419 (437)
..+|.|+|+|++ .+++|++++|++...+ ...|+ +++.... .....||||+.|||++|+|||++++|||||+
T Consensus 254 --~~~p~i~f~fgg--~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 254 --PSLPDITFVLGG--KSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred --ccCCcEEEEECC--EEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 358999999987 8999999999987643 46897 5664321 1234699999999999999999999999984
No 16
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=4.2e-48 Score=394.84 Aligned_cols=311 Identities=15% Similarity=0.218 Sum_probs=235.5
Q ss_pred ceEEeEeeCCCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCC
Q 036132 31 ALLLPVTKDASTLQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRP 110 (437)
Q Consensus 31 ~~~~Pl~~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~ 110 (437)
...+||... .+.+|+++|.||||+|+++|+|||||+++||+|..| .+..|.....++|+ .++
T Consensus 126 ~~~~~l~d~-~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C-----------~~~~C~~~~~yd~s------~Ss 187 (450)
T PTZ00013 126 NDVIELDDV-ANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKC-----------DSIGCSIKNLYDSS------KSK 187 (450)
T ss_pred CCceeeecc-CCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccC-----------CccccccCCCccCc------cCc
Confidence 346788753 577999999999999999999999999999999766 33356655556554 234
Q ss_pred CCCCCCCeeeeecCCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCcc-C--CCCCCcceEeecCCCCC-
Q 036132 111 GCNNDTCAHLPDNTITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLL-E--GLASGVKGMAGLGRTRI- 186 (437)
Q Consensus 111 ~~~~~~~~~~~~Y~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~-~--~~~~~~~GIlGLg~~~~- 186 (437)
++....|.+.+.|| +|+ +.|.+++|+|++++. +++ ..|+++..... . ......+||||||++..
T Consensus 188 T~~~~~~~~~i~YG-~Gs-v~G~~~~Dtv~iG~~---------~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s 255 (450)
T PTZ00013 188 SYEKDGTKVDITYG-SGT-VKGFFSKDLVTLGHL---------SMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLS 255 (450)
T ss_pred ccccCCcEEEEEEC-Cce-EEEEEEEEEEEECCE---------EEc-cEEEEEEeccccccceecccccceecccCCccc
Confidence 45566789999997 665 899999999999875 565 57888765421 1 11235799999998754
Q ss_pred -----chHhhhhhccCCC-cceEEecCCCCCCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCcc
Q 036132 187 -----SLPSQFSAAFSFD-RKFAICLSSSSRVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAE 260 (437)
Q Consensus 187 -----s~~~ql~~~~~i~-~~FS~~L~~~~~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~~ 260 (437)
+++.+|.+++.|+ ++||+||.+....+|.|+|||+|+ +++.|++.|+|+.. ..+
T Consensus 256 ~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~------~~y~G~L~y~pv~~--------------~~y 315 (450)
T PTZ00013 256 IGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEE------KFYEGNITYEKLNH--------------DLY 315 (450)
T ss_pred cccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCc------cccccceEEEEcCc--------------Cce
Confidence 3667888888884 679999987545689999999996 56789999999953 468
Q ss_pred eEEeEeeEEEcCEEeccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccCCC
Q 036132 261 YFIGVKSIKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTFV 340 (437)
Q Consensus 261 y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~ 340 (437)
|.|+++ +.+|..... +..+||||||+++++|+++++++.+++.... .+.. ......|+.
T Consensus 316 W~I~l~-v~~G~~~~~------------~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~~~~--~~y~~~C~~---- 374 (450)
T PTZ00013 316 WQIDLD-VHFGKQTMQ------------KANVIVDSGTTTITAPSEFLNKFFANLNVIK--VPFL--PFYVTTCDN---- 374 (450)
T ss_pred EEEEEE-EEECceecc------------ccceEECCCCccccCCHHHHHHHHHHhCCee--cCCC--CeEEeecCC----
Confidence 999998 666643321 3579999999999999999888887664321 1111 112245653
Q ss_pred CCCCCCCCcCeEEEEEecCceEEEEcCCCeEEEeC--CCeEEE-EEEeCCCCCCCceeechhhccceEEEEeCCCCeEEE
Q 036132 341 GSTRVGPAVPQIDLVLQSNTVIWRIFGANSMVQVR--DDVLCL-GFVDGGVNPRTSIVIGGHQLEDNLLQFDLATSRLGF 417 (437)
Q Consensus 341 ~~~~~~~~~P~l~f~f~g~~~~~~v~~~~y~~~~~--~~~~C~-~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGf 417 (437)
..+|+|+|.|+| .+++|+|++|+.... ++..|+ +++.... ..+.||||++|||++|+|||++++||||
T Consensus 375 ------~~lP~i~F~~~g--~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~-~~~~~ILGd~FLr~~Y~VFD~~n~rIGf 445 (450)
T PTZ00013 375 ------KEMPTLEFKSAN--NTYTLEPEYYMNPLLDVDDTLCMITMLPVDI-DDNTFILGDPFMRKYFTVFDYDKESVGF 445 (450)
T ss_pred ------CCCCeEEEEECC--EEEEECHHHheehhccCCCCeeEEEEEECCC-CCCCEEECHHHhccEEEEEECCCCEEEE
Confidence 258999999987 899999999987532 346897 5555432 2347999999999999999999999999
Q ss_pred eecC
Q 036132 418 SSSL 421 (437)
Q Consensus 418 a~~~ 421 (437)
|+.+
T Consensus 446 A~a~ 449 (450)
T PTZ00013 446 AIAK 449 (450)
T ss_pred EEeC
Confidence 9865
No 17
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=4.4e-48 Score=383.70 Aligned_cols=306 Identities=19% Similarity=0.260 Sum_probs=236.4
Q ss_pred CCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCCCCCCCCCeee
Q 036132 41 STLQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCNNDTCAHL 120 (437)
Q Consensus 41 ~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 120 (437)
.+.+|+++|.||||+|+++|+|||||+++||+|..|.. | ...|.....++|. .++++....|.|+
T Consensus 5 ~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~--------~-~~~c~~~~~y~~~------~SsT~~~~~~~~~ 69 (326)
T cd05487 5 LDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSP--------L-YTACVTHNLYDAS------DSSTYKENGTEFT 69 (326)
T ss_pred CCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcC--------c-chhhcccCcCCCC------CCeeeeECCEEEE
Confidence 57899999999999999999999999999999876632 1 1246555555544 2445566789999
Q ss_pred eecCCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCcc-CCCCCCcceEeecCCCCC------chHhhhh
Q 036132 121 PDNTITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLL-EGLASGVKGMAGLGRTRI------SLPSQFS 193 (437)
Q Consensus 121 ~~Y~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~-~~~~~~~~GIlGLg~~~~------s~~~ql~ 193 (437)
+.|+ +++ +.|.+++|+|++++. .+ ++.||++..... .......+||||||++.. ++..+|.
T Consensus 70 ~~Yg-~g~-~~G~~~~D~v~~g~~---------~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~ 137 (326)
T cd05487 70 IHYA-SGT-VKGFLSQDIVTVGGI---------PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIM 137 (326)
T ss_pred EEeC-Cce-EEEEEeeeEEEECCE---------Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHH
Confidence 9997 764 899999999999864 45 478999887521 112245799999998654 3556788
Q ss_pred hccCC-CcceEEecCCCC--CCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCcceEEeEeeEEE
Q 036132 194 AAFSF-DRKFAICLSSSS--RVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIGVKSIKI 270 (437)
Q Consensus 194 ~~~~i-~~~FS~~L~~~~--~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v 270 (437)
+++.| +++||+||.+.. ...|+|+|||+|+ +++.|+++|+|+.. ..+|.|++++|+|
T Consensus 138 ~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~------~~y~g~l~~~~~~~--------------~~~w~v~l~~i~v 197 (326)
T cd05487 138 SQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDP------QHYQGDFHYINTSK--------------TGFWQIQMKGVSV 197 (326)
T ss_pred hcCCCCCCEEEEEEeCCCCCCCCcEEEECCcCh------hhccCceEEEECCc--------------CceEEEEecEEEE
Confidence 88878 478999998752 3579999999996 46789999999854 4689999999999
Q ss_pred cCEEeccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCCCCCcC
Q 036132 271 NGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTFVGSTRVGPAVP 350 (437)
Q Consensus 271 ~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P 350 (437)
+++.+.... ...+||||||+++++|+++++++++++..... .......|+.. ..+|
T Consensus 198 g~~~~~~~~---------~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~------~~~y~~~C~~~---------~~~P 253 (326)
T cd05487 198 GSSTLLCED---------GCTAVVDTGASFISGPTSSISKLMEALGAKER------LGDYVVKCNEV---------PTLP 253 (326)
T ss_pred CCEEEecCC---------CCEEEECCCccchhCcHHHHHHHHHHhCCccc------CCCEEEecccc---------CCCC
Confidence 998764321 25799999999999999999999888754311 11122456653 3689
Q ss_pred eEEEEEecCceEEEEcCCCeEEEeCC--CeEEE-EEEeCCC--CCCCceeechhhccceEEEEeCCCCeEEEee
Q 036132 351 QIDLVLQSNTVIWRIFGANSMVQVRD--DVLCL-GFVDGGV--NPRTSIVIGGHQLEDNLLQFDLATSRLGFSS 419 (437)
Q Consensus 351 ~l~f~f~g~~~~~~v~~~~y~~~~~~--~~~C~-~~~~~~~--~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 419 (437)
.|+|+|++ .+++|++++|++...+ +..|+ ++..... ...+.||||+.|||++|+|||++++|||||+
T Consensus 254 ~i~f~fgg--~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~ 325 (326)
T cd05487 254 DISFHLGG--KEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFAL 325 (326)
T ss_pred CEEEEECC--EEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeee
Confidence 99999976 8999999999987643 56787 6665321 1234799999999999999999999999997
No 18
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=3.9e-48 Score=395.75 Aligned_cols=312 Identities=14% Similarity=0.213 Sum_probs=238.2
Q ss_pred cceEEeEeeCCCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCC
Q 036132 30 KALLLPVTKDASTLQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPR 109 (437)
Q Consensus 30 ~~~~~Pl~~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~ 109 (437)
....+||.+ ..+.+|+++|+||||||+++|+|||||+++||+|..| .+..|.....++++ .+
T Consensus 126 ~~~~v~L~n-~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C-----------~~~~C~~~~~yd~s------~S 187 (453)
T PTZ00147 126 EFDNVELKD-LANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKC-----------TTEGCETKNLYDSS------KS 187 (453)
T ss_pred CCCeeeccc-cCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCC-----------CcccccCCCccCCc------cC
Confidence 345788875 3578999999999999999999999999999999866 23346655555543 24
Q ss_pred CCCCCCCCeeeeecCCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccC---CCCCCcceEeecCCCCC
Q 036132 110 PGCNNDTCAHLPDNTITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLE---GLASGVKGMAGLGRTRI 186 (437)
Q Consensus 110 ~~~~~~~~~~~~~Y~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~---~~~~~~~GIlGLg~~~~ 186 (437)
++|....+.|++.|+ +| .+.|.+++|+|++++. +++ ..|+|+....+. ......|||||||++..
T Consensus 188 sT~~~~~~~f~i~Yg-~G-svsG~~~~DtVtiG~~---------~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~ 255 (453)
T PTZ00147 188 KTYEKDGTKVEMNYV-SG-TVSGFFSKDLVTIGNL---------SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDL 255 (453)
T ss_pred cceEECCCEEEEEeC-CC-CEEEEEEEEEEEECCE---------EEE-EEEEEEEeccCcccccccccccceecccCCcc
Confidence 455667789999997 76 5899999999999875 566 578887764211 11235799999999765
Q ss_pred c------hHhhhhhccCCC-cceEEecCCCCCCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCc
Q 036132 187 S------LPSQFSAAFSFD-RKFAICLSSSSRVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSA 259 (437)
Q Consensus 187 s------~~~ql~~~~~i~-~~FS~~L~~~~~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~ 259 (437)
+ ++.+|..++.|+ ++||+||.+.....|.|+|||+|+ +++.|++.|+|+.. ..
T Consensus 256 S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~------~ky~G~l~y~pl~~--------------~~ 315 (453)
T PTZ00147 256 SIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEE------RFYEGPLTYEKLNH--------------DL 315 (453)
T ss_pred ccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcCh------hhcCCceEEEEcCC--------------Cc
Confidence 4 566888888884 689999987545689999999996 56789999999953 46
Q ss_pred ceEEeEeeEEEcCEEeccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccCC
Q 036132 260 EYFIGVKSIKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTF 339 (437)
Q Consensus 260 ~y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~ 339 (437)
+|.|.++ +.+++.... ...+||||||+++++|+++++++.+++.... .+.. ......|+..
T Consensus 316 ~W~V~l~-~~vg~~~~~------------~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~~~--~~y~~~C~~~-- 376 (453)
T PTZ00147 316 YWQVDLD-VHFGNVSSE------------KANVIVDSGTSVITVPTEFLNKFVESLDVFK--VPFL--PLYVTTCNNT-- 376 (453)
T ss_pred eEEEEEE-EEECCEecC------------ceeEEECCCCchhcCCHHHHHHHHHHhCCee--cCCC--CeEEEeCCCC--
Confidence 8999998 477664311 3579999999999999999999988775321 1111 1122467642
Q ss_pred CCCCCCCCCcCeEEEEEecCceEEEEcCCCeEEEeCC--CeEEE-EEEeCCCCCCCceeechhhccceEEEEeCCCCeEE
Q 036132 340 VGSTRVGPAVPQIDLVLQSNTVIWRIFGANSMVQVRD--DVLCL-GFVDGGVNPRTSIVIGGHQLEDNLLQFDLATSRLG 416 (437)
Q Consensus 340 ~~~~~~~~~~P~l~f~f~g~~~~~~v~~~~y~~~~~~--~~~C~-~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIG 416 (437)
.+|+++|.|++ .+++|+|++|+....+ ...|+ +++.... ....||||++|||++|+|||++++|||
T Consensus 377 --------~lP~~~f~f~g--~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~-~~~~~ILGd~FLr~~YtVFD~~n~rIG 445 (453)
T PTZ00147 377 --------KLPTLEFRSPN--KVYTLEPEYYLQPIEDIGSALCMLNIIPIDL-EKNTFILGDPFMRKYFTVFDYDNHTVG 445 (453)
T ss_pred --------CCCeEEEEECC--EEEEECHHHheeccccCCCcEEEEEEEECCC-CCCCEEECHHHhccEEEEEECCCCEEE
Confidence 48999999987 8999999999875432 35797 5665432 234699999999999999999999999
Q ss_pred EeecC
Q 036132 417 FSSSL 421 (437)
Q Consensus 417 fa~~~ 421 (437)
||+.+
T Consensus 446 fA~a~ 450 (453)
T PTZ00147 446 FALAK 450 (453)
T ss_pred EEEec
Confidence 99874
No 19
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1e-46 Score=379.35 Aligned_cols=321 Identities=19% Similarity=0.225 Sum_probs=230.9
Q ss_pred ccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCCCCCCCCCeeeee
Q 036132 43 LQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCNNDTCAHLPD 122 (437)
Q Consensus 43 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 122 (437)
..|+++|.||||+|++.|+|||||+++||+|..|.. | ...+++. .++++....|.|++.
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~-------------~--~~~f~~~------~SsT~~~~~~~~~i~ 60 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPF-------------I--HTYFHRE------LSSTYRDLGKGVTVP 60 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCcc-------------c--cccCCch------hCcCcccCCceEEEE
Confidence 379999999999999999999999999999976521 1 1122222 233445667999999
Q ss_pred cCCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccCCCC-CCcceEeecCCCCC--------chHhhhh
Q 036132 123 NTITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLEGLA-SGVKGMAGLGRTRI--------SLPSQFS 193 (437)
Q Consensus 123 Y~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~~~~-~~~~GIlGLg~~~~--------s~~~ql~ 193 (437)
|+ +| .++|.+++|+|++++.. . ..+ .+.|+++......... ...+||||||++.+ ++..+|.
T Consensus 61 Yg-~G-s~~G~~~~D~v~ig~~~----~--~~~-~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~ 131 (364)
T cd05473 61 YT-QG-SWEGELGTDLVSIPKGP----N--VTF-RANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLV 131 (364)
T ss_pred EC-cc-eEEEEEEEEEEEECCCC----c--cce-EEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHH
Confidence 97 76 57999999999997531 0 122 1335555543211111 25799999998754 3555777
Q ss_pred hccCCCcceEEecCC---------CCCCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCcceEEe
Q 036132 194 AAFSFDRKFAICLSS---------SSRVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIG 264 (437)
Q Consensus 194 ~~~~i~~~FS~~L~~---------~~~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~~y~v~ 264 (437)
+++.++++||++|.. .....|+|+|||+|+ +++.|++.|+|++. ..+|.|.
T Consensus 132 ~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~------~~~~g~l~~~p~~~--------------~~~~~v~ 191 (364)
T cd05473 132 KQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDP------SLYKGDIWYTPIRE--------------EWYYEVI 191 (364)
T ss_pred hccCCccceEEEecccccccccccccCCCcEEEeCCcCH------hhcCCCceEEecCc--------------ceeEEEE
Confidence 777776789998742 112479999999986 46789999999974 3689999
Q ss_pred EeeEEEcCEEeccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCC---CCCCCcccccCCCC
Q 036132 265 VKSIKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTP---VAPFGACFNSTFVG 341 (437)
Q Consensus 265 l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~---~~~~~~C~~~~~~~ 341 (437)
+++|+|+++.+..+...+. ...+||||||++++||+++|+++.+++.++.. .+..+. ......|+.....
T Consensus 192 l~~i~vg~~~~~~~~~~~~-----~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~C~~~~~~- 264 (364)
T cd05473 192 ILKLEVGGQSLNLDCKEYN-----YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASL-IEDFPDGFWLGSQLACWQKGTT- 264 (364)
T ss_pred EEEEEECCEeccccccccc-----CccEEEeCCCcceeCCHHHHHHHHHHHHhhcc-cccCCccccCcceeecccccCc-
Confidence 9999999998865432221 24699999999999999999999999988753 111111 1112468764321
Q ss_pred CCCCCCCcCeEEEEEecC----ceEEEEcCCCeEEEeC---CCeEEEEEEeCCCCCCCceeechhhccceEEEEeCCCCe
Q 036132 342 STRVGPAVPQIDLVLQSN----TVIWRIFGANSMVQVR---DDVLCLGFVDGGVNPRTSIVIGGHQLEDNLLQFDLATSR 414 (437)
Q Consensus 342 ~~~~~~~~P~l~f~f~g~----~~~~~v~~~~y~~~~~---~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~r 414 (437)
....+|+|+|+|++. +++++|+|++|+.... .+..|+.+..... ...||||++|||++|+|||++++|
T Consensus 265 ---~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~--~~~~ILG~~flr~~yvvfD~~~~r 339 (364)
T cd05473 265 ---PWEIFPKISIYLRDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQS--TNGTVIGAVIMEGFYVVFDRANKR 339 (364)
T ss_pred ---hHhhCCcEEEEEccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeeecC--CCceEEeeeeEcceEEEEECCCCE
Confidence 113699999999862 3578999999987543 2468986543221 236899999999999999999999
Q ss_pred EEEeecCccccccCCCc
Q 036132 415 LGFSSSLLFHQTTCANF 431 (437)
Q Consensus 415 IGfa~~~~~~~~~c~~~ 431 (437)
||||+ .+|...
T Consensus 340 IGfa~------~~C~~~ 350 (364)
T cd05473 340 VGFAV------STCAEH 350 (364)
T ss_pred EeeEe------cccccc
Confidence 99998 488764
No 20
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.6e-46 Score=365.65 Aligned_cols=277 Identities=20% Similarity=0.274 Sum_probs=226.0
Q ss_pred ccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCCCCCCCCCeeeee
Q 036132 43 LQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCNNDTCAHLPD 122 (437)
Q Consensus 43 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 122 (437)
+.|+++|.||||+|+++|+|||||+++||+ .|.+.
T Consensus 1 ~~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~---------------------------------------------~~~~~ 35 (295)
T cd05474 1 TYYSAELSVGTPPQKVTVLLDTGSSDLWVP---------------------------------------------DFSIS 35 (295)
T ss_pred CeEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------eeEEE
Confidence 369999999999999999999999999997 15678
Q ss_pred cCCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccCCCCCCcceEeecCCCCC-----------chHhh
Q 036132 123 NTITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLEGLASGVKGMAGLGRTRI-----------SLPSQ 191 (437)
Q Consensus 123 Y~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~-----------s~~~q 191 (437)
|+ +++.+.|.+++|+|++++. .++++.|||++.. ...+||||||+... +++.|
T Consensus 36 Y~-~g~~~~G~~~~D~v~~g~~---------~~~~~~fg~~~~~------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~ 99 (295)
T cd05474 36 YG-DGTSASGTWGTDTVSIGGA---------TVKNLQFAVANST------SSDVGVLGIGLPGNEATYGTGYTYPNFPIA 99 (295)
T ss_pred ec-cCCcEEEEEEEEEEEECCe---------EecceEEEEEecC------CCCcceeeECCCCCcccccCCCcCCCHHHH
Confidence 97 8899999999999999875 6889999999984 24699999998775 68899
Q ss_pred hhhccCCC-cceEEecCCCCCCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCcceEEeEeeEEE
Q 036132 192 FSAAFSFD-RKFAICLSSSSRVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIGVKSIKI 270 (437)
Q Consensus 192 l~~~~~i~-~~FS~~L~~~~~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v 270 (437)
|.+++.|+ ++||+||.+....+|.|+|||+|. .++.+++.|+|++..... ....+|.|++++|++
T Consensus 100 L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~------~~~~g~~~~~p~~~~~~~--------~~~~~~~v~l~~i~v 165 (295)
T cd05474 100 LKKQGLIKKNAYSLYLNDLDASTGSILFGGVDT------AKYSGDLVTLPIVNDNGG--------SEPSELSVTLSSISV 165 (295)
T ss_pred HHHCCcccceEEEEEeCCCCCCceeEEEeeecc------ceeeceeEEEeCcCcCCC--------CCceEEEEEEEEEEE
Confidence 99888874 689999998645689999999986 467789999999875310 023789999999999
Q ss_pred cCEEeccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCCCCCcC
Q 036132 271 NGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTFVGSTRVGPAVP 350 (437)
Q Consensus 271 ~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P 350 (437)
+++.+..+.. .+...++|||||++++||+++|++|.+++.+... + . .......|+.. .. |
T Consensus 166 ~~~~~~~~~~------~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~--~-~-~~~~~~~C~~~---------~~-p 225 (295)
T cd05474 166 NGSSGNTTLL------SKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYD--S-D-EGLYVVDCDAK---------DD-G 225 (295)
T ss_pred EcCCCccccc------CCCccEEECCCCccEeCCHHHHHHHHHHhCCEEc--C-C-CcEEEEeCCCC---------CC-C
Confidence 9987643211 1247899999999999999999999998876532 1 1 11233466654 23 9
Q ss_pred eEEEEEecCceEEEEcCCCeEEEeC----CCeEEE-EEEeCCCCCCCceeechhhccceEEEEeCCCCeEEEee
Q 036132 351 QIDLVLQSNTVIWRIFGANSMVQVR----DDVLCL-GFVDGGVNPRTSIVIGGHQLEDNLLQFDLATSRLGFSS 419 (437)
Q Consensus 351 ~l~f~f~g~~~~~~v~~~~y~~~~~----~~~~C~-~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 419 (437)
.|+|+|+| .+++||+++|++... .+..|+ ++..... +.||||++|||++|++||.+++|||||+
T Consensus 226 ~i~f~f~g--~~~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~~---~~~iLG~~fl~~~y~vfD~~~~~ig~a~ 294 (295)
T cd05474 226 SLTFNFGG--ATISVPLSDLVLPASTDDGGDGACYLGIQPSTS---DYNILGDTFLRSAYVVYDLDNNEISLAQ 294 (295)
T ss_pred EEEEEECC--eEEEEEHHHhEeccccCCCCCCCeEEEEEeCCC---CcEEeChHHhhcEEEEEECCCCEEEeec
Confidence 99999987 999999999998764 256785 7766542 4799999999999999999999999997
No 21
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=8.5e-45 Score=352.34 Aligned_cols=267 Identities=18% Similarity=0.192 Sum_probs=202.8
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCCCCC-CCCCeeeeec
Q 036132 45 YVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCN-NDTCAHLPDN 123 (437)
Q Consensus 45 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~-~~~~~~~~~Y 123 (437)
|+++|+||||||++.|+|||||+++||+|..|. .| .|.....+.|. .++++. ...|.|.+.|
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~--------~~---~~~~~~~y~~~------~Sst~~~~~~~~~~i~Y 63 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP--------AA---QQGGHKLYDPS------KSSTAKLLPGATWSISY 63 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC--------ch---hhccCCcCCCc------cCccceecCCcEEEEEe
Confidence 799999999999999999999999999998773 12 12222223332 123333 2468999999
Q ss_pred CCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccCC-CCCCcceEeecCCCCCc---------hHhhhh
Q 036132 124 TITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLEG-LASGVKGMAGLGRTRIS---------LPSQFS 193 (437)
Q Consensus 124 ~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~~-~~~~~~GIlGLg~~~~s---------~~~ql~ 193 (437)
+ +++.+.|.+++|+|++++. +++++.|||++...... .....+||||||+...+ +..+|.
T Consensus 64 ~-~G~~~~G~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~ 133 (278)
T cd06097 64 G-DGSSASGIVYTDTVSIGGV---------EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENAL 133 (278)
T ss_pred C-CCCeEEEEEEEEEEEECCE---------EECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHH
Confidence 7 8888999999999999875 78899999998763211 22468999999987543 445565
Q ss_pred hccCCCcceEEecCCCCCCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCcceEEeEeeEEEcCE
Q 036132 194 AAFSFDRKFAICLSSSSRVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIGVKSIKINGN 273 (437)
Q Consensus 194 ~~~~i~~~FS~~L~~~~~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~ 273 (437)
++.. ++.||+||.+ ..+|+|+|||+|+ +++.|+++|+|++.. ..+|.|++++|+|+++
T Consensus 134 ~~~~-~~~Fs~~l~~--~~~G~l~fGg~D~------~~~~g~l~~~pi~~~-------------~~~w~v~l~~i~v~~~ 191 (278)
T cd06097 134 SSLD-APLFTADLRK--AAPGFYTFGYIDE------SKYKGEISWTPVDNS-------------SGFWQFTSTSYTVGGD 191 (278)
T ss_pred Hhcc-CceEEEEecC--CCCcEEEEeccCh------HHcCCceEEEEccCC-------------CcEEEEEEeeEEECCc
Confidence 5533 5789999987 3589999999996 568899999999753 4689999999999987
Q ss_pred EeccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCCCCCcCeEE
Q 036132 274 TVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTFVGSTRVGPAVPQID 353 (437)
Q Consensus 274 ~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~l~ 353 (437)
..... ....++|||||+++++|+++++++.+++.... +.. ...+|..+|.. .+|+|+
T Consensus 192 ~~~~~---------~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~--~~~------~~~~~~~~C~~------~~P~i~ 248 (278)
T cd06097 192 APWSR---------SGFSAIADTGTTLILLPDAIVEAYYSQVPGAY--YDS------EYGGWVFPCDT------TLPDLS 248 (278)
T ss_pred ceeec---------CCceEEeecCCchhcCCHHHHHHHHHhCcCCc--ccC------CCCEEEEECCC------CCCCEE
Confidence 43211 13679999999999999999988888773211 111 11234444432 278888
Q ss_pred EEEecCceEEEEcCCCeEEEeCCCeEEEEEEeCCCCCCCceeechhhccceEEEEeCCCCeEEEee
Q 036132 354 LVLQSNTVIWRIFGANSMVQVRDDVLCLGFVDGGVNPRTSIVIGGHQLEDNLLQFDLATSRLGFSS 419 (437)
Q Consensus 354 f~f~g~~~~~~v~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 419 (437)
|+| .||||++|||++|+|||++|+|||||+
T Consensus 249 f~~------------------------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 249 FAV------------------------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred EEE------------------------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 886 489999999999999999999999995
No 22
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.6e-42 Score=334.37 Aligned_cols=274 Identities=23% Similarity=0.379 Sum_probs=213.8
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCCCCCCCCCeeeeecC
Q 036132 45 YVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCNNDTCAHLPDNT 124 (437)
Q Consensus 45 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~Y~ 124 (437)
|+++|.||+|+|++.|+|||||+++||+|..|.. |....+.. .. +....+.+|.+..|.|.+.|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~--------~~~~~~~~---~~----~~~~~s~~~~~~~~~~~~~Y~ 65 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTS--------CSCQKHPR---FK----YDSSKSSTYKDTGCTFSITYG 65 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCc--------cccccCCC---Cc----cCccCCceeecCCCEEEEEEC
Confidence 7899999999999999999999999999987732 11111110 00 111223345677899999996
Q ss_pred CCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccCCCCCCcceEeecCCCC------CchHhhhhhccCC
Q 036132 125 ITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLEGLASGVKGMAGLGRTR------ISLPSQFSAAFSF 198 (437)
Q Consensus 125 ~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~~~~~i 198 (437)
+ +.+.|.+++|++++++. .++++.|||++...........+||||||+.. .+++.||.+++.|
T Consensus 66 -~-g~~~g~~~~D~v~~~~~---------~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i 134 (283)
T cd05471 66 -D-GSVTGGLGTDTVTIGGL---------TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLI 134 (283)
T ss_pred -C-CeEEEEEEEeEEEECCE---------EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCC
Confidence 6 67899999999999875 57899999999874323345789999999987 7899999998876
Q ss_pred -CcceEEecCCC--CCCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCcceEEeEeeEEEcCEEe
Q 036132 199 -DRKFAICLSSS--SRVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIGVKSIKINGNTV 275 (437)
Q Consensus 199 -~~~FS~~L~~~--~~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~~ 275 (437)
+++||+||.+. ....|.|+|||+|. .++.+++.|+|++... ..+|.|.+++|.|+++..
T Consensus 135 ~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~------~~~~~~~~~~p~~~~~------------~~~~~v~l~~i~v~~~~~ 196 (283)
T cd05471 135 SSPVFSFYLGRDGDGGNGGELTFGGIDP------SKYTGDLTYTPVVSNG------------PGYWQVPLDGISVGGKSV 196 (283)
T ss_pred CCCEEEEEEcCCCCCCCCCEEEEcccCc------cccCCceEEEecCCCC------------CCEEEEEeCeEEECCcee
Confidence 57899999984 25689999999986 3467899999998752 578999999999998741
Q ss_pred ccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCCCCCcCeEEEE
Q 036132 276 PLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTFVGSTRVGPAVPQIDLV 355 (437)
Q Consensus 276 ~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~l~f~ 355 (437)
... .....++|||||++++||+++|+++.+++...... ...|+...+.. ...+|.|+|+
T Consensus 197 ~~~--------~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~----~~~~p~i~f~ 255 (283)
T cd05471 197 ISS--------SGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSP----CDTLPDITFT 255 (283)
T ss_pred eec--------CCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcc----cCcCCCEEEE
Confidence 111 11468999999999999999999999988876531 12233332221 1578999999
Q ss_pred EecCceEEEEcCCCeEEEeCCCeEEEEEEeCCCCCCCceeechhhccceEEEEeCCCCeEEEee
Q 036132 356 LQSNTVIWRIFGANSMVQVRDDVLCLGFVDGGVNPRTSIVIGGHQLEDNLLQFDLATSRLGFSS 419 (437)
Q Consensus 356 f~g~~~~~~v~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 419 (437)
| .+|||+.|||++|++||.+++|||||+
T Consensus 256 f------------------------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 256 F------------------------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred E------------------------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 8 379999999999999999999999985
No 23
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.9e-43 Score=348.24 Aligned_cols=303 Identities=21% Similarity=0.332 Sum_probs=233.5
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCCCCCCCCCeeeeec
Q 036132 44 QYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCNNDTCAHLPDN 123 (437)
Q Consensus 44 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~Y 123 (437)
+|+++|.||||+|+++|++||||+++||++..|... ..|.....+.|. .+.+|....+.+.+.|
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~----------~~~~~~~~y~~~------~S~t~~~~~~~~~~~y 64 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSC----------SSCASSGFYNPS------KSSTFSNQGKPFSISY 64 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSH----------THHCTSC-BBGG------GSTTEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccc----------cccccccccccc------cccccccceeeeeeec
Confidence 599999999999999999999999999998766322 133333334333 1223344567899999
Q ss_pred CCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccC-CCCCCcceEeecCCC-------CCchHhhhhhc
Q 036132 124 TITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLE-GLASGVKGMAGLGRT-------RISLPSQFSAA 195 (437)
Q Consensus 124 ~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~-------~~s~~~ql~~~ 195 (437)
+ ++. ++|.+++|++++++. .+.++.||++...... ......+||||||+. ..+++.+|.++
T Consensus 65 ~-~g~-~~G~~~~D~v~ig~~---------~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~ 133 (317)
T PF00026_consen 65 G-DGS-VSGNLVSDTVSIGGL---------TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQ 133 (317)
T ss_dssp T-TEE-EEEEEEEEEEEETTE---------EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHT
T ss_pred c-Ccc-cccccccceEeeeec---------cccccceeccccccccccccccccccccccCCcccccccCCcceecchhh
Confidence 7 766 999999999999875 6778999999985221 123568999999964 35688899999
Q ss_pred cCC-CcceEEecCCCCCCceeEEEcCCCCCCCCCCcCCCCceeeeeCccCCCCCCCcccCCCCCcceEEeEeeEEEcCEE
Q 036132 196 FSF-DRKFAICLSSSSRVNGVVFFGDGPYFFLPRDIDFSKSLFYTPLILNPVSTAGAFFEGEPSAEYFIGVKSIKINGNT 274 (437)
Q Consensus 196 ~~i-~~~FS~~L~~~~~~~G~i~fGg~d~~~~p~~~~~~g~i~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~ 274 (437)
+.| +++||++|.+.....|.|+|||+|. +++.|++.|+|+.. ..+|.+.+.+|.++++.
T Consensus 134 g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~------~~~~g~~~~~~~~~--------------~~~w~v~~~~i~i~~~~ 193 (317)
T PF00026_consen 134 GLISSNVFSLYLNPSDSQNGSLTFGGYDP------SKYDGDLVWVPLVS--------------SGYWSVPLDSISIGGES 193 (317)
T ss_dssp TSSSSSEEEEEEESTTSSEEEEEESSEEG------GGEESEEEEEEBSS--------------TTTTEEEEEEEEETTEE
T ss_pred ccccccccceeeeecccccchheeecccc------ccccCceeccCccc--------------ccccccccccccccccc
Confidence 888 4779999999744679999999986 56889999999983 57899999999999983
Q ss_pred eccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccCCCCCCCCCCCcCeEEE
Q 036132 275 VPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANIPRVTPVAPFGACFNSTFVGSTRVGPAVPQIDL 354 (437)
Q Consensus 275 ~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~l~f 354 (437)
..... ...++||||+++++||+++++.|++.+...... ......|... ..+|.++|
T Consensus 194 ~~~~~---------~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~------~~~~~~c~~~---------~~~p~l~f 249 (317)
T PF00026_consen 194 VFSSS---------GQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD------GVYSVPCNST---------DSLPDLTF 249 (317)
T ss_dssp EEEEE---------EEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC------SEEEEETTGG---------GGSEEEEE
T ss_pred ccccc---------ceeeecccccccccccchhhHHHHhhhcccccc------eeEEEecccc---------cccceEEE
Confidence 22111 246999999999999999999999988766431 1122355543 35899999
Q ss_pred EEecCceEEEEcCCCeEEEeCCC--eEEE-EEEeCC-CCCCCceeechhhccceEEEEeCCCCeEEEee
Q 036132 355 VLQSNTVIWRIFGANSMVQVRDD--VLCL-GFVDGG-VNPRTSIVIGGHQLEDNLLQFDLATSRLGFSS 419 (437)
Q Consensus 355 ~f~g~~~~~~v~~~~y~~~~~~~--~~C~-~~~~~~-~~~~~~~ILG~~flr~~yvvFD~e~~rIGfa~ 419 (437)
.|++ .+++|||++|+...... ..|. .+.... ......+|||.+|||++|+|||.|++|||||+
T Consensus 250 ~~~~--~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~ 316 (317)
T PF00026_consen 250 TFGG--VTFTIPPSDYIFKIEDGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQ 316 (317)
T ss_dssp EETT--EEEEEEHHHHEEEESSTTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEE
T ss_pred eeCC--EEEEecchHhcccccccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEec
Confidence 9997 89999999999887653 3786 455511 12346799999999999999999999999997
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.96 E-value=5.1e-29 Score=222.62 Aligned_cols=159 Identities=37% Similarity=0.686 Sum_probs=128.2
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeeeC----CCCCCCCCcccccCCCccccccccCCccccCCCCCCCCCCCCCCeee
Q 036132 45 YVTQINQRTPLVPVKVTLDLGGQFLWVDC----DQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCNNDTCAHL 120 (437)
Q Consensus 45 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~----~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 120 (437)
|+++|.||||+|++.|++||||+++|++| -.+.+|++|+.+.|.++.|....+. +. ...+.+..|.|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~~~~f~~~~Sst~~~v~C~s~~C~~~~~~-~~-------~~~~~~~~C~y~ 72 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCPDPPFDPSKSSTYRPVPCSSPQCSSAPSF-CP-------CCCCSNNSCPYS 72 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET----STT-TTSSBEC-BTTSHHHHHCTSS-BT-------CCTCESSEEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCCCcccCCccCCcccccCCCCcchhhcccc-cc-------cCCCCcCcccce
Confidence 89999999999999999999999999999 4568999999999999999876643 11 011246789999
Q ss_pred eecCCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccCCCCCCcceEeecCCCCCchHhhhhhccCCCc
Q 036132 121 PDNTITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLEGLASGVKGMAGLGRTRISLPSQFSAAFSFDR 200 (437)
Q Consensus 121 ~~Y~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~ 200 (437)
+.|+ +++.+.|++++|+|+++..++.. ..+.++.|||+.... ++....+||||||+++.||++||.+. ..+
T Consensus 73 ~~y~-~~s~~~G~l~~D~~~~~~~~~~~----~~~~~~~FGC~~~~~--g~~~~~~GilGLg~~~~Sl~sQl~~~--~~~ 143 (164)
T PF14543_consen 73 QSYG-DGSSSSGFLASDTLTFGSSSGGS----NSVPDFIFGCATSNS--GLFYGADGILGLGRGPLSLPSQLASS--SGN 143 (164)
T ss_dssp EEET-TTEEEEEEEEEEEEEEEEESSSS----EEEEEEEEEEE-GGG--TSSTTEEEEEE-SSSTTSHHHHHHHH----S
T ss_pred eecC-CCccccCceEEEEEEecCCCCCC----ceeeeEEEEeeeccc--cCCcCCCcccccCCCcccHHHHHHHh--cCC
Confidence 9997 89999999999999999864221 367789999999984 44458999999999999999999887 458
Q ss_pred ceEEecCC-CCCCceeEEEcC
Q 036132 201 KFAICLSS-SSRVNGVVFFGD 220 (437)
Q Consensus 201 ~FS~~L~~-~~~~~G~i~fGg 220 (437)
+||+||.+ .....|.|+||+
T Consensus 144 ~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 144 KFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEEEEB-S-SSSSEEEEEECS
T ss_pred eEEEECCCCCCCCCEEEEeCc
Confidence 99999999 457789999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.94 E-value=5.9e-26 Score=202.42 Aligned_cols=158 Identities=29% Similarity=0.542 Sum_probs=123.4
Q ss_pred ceEEeEeeEEEcCEEeccCCccccccccCCCcEEEeccCcceeecHHHHHHHHHHHHHHhhcC--CC-CCCCCCCCcccc
Q 036132 260 EYFIGVKSIKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNALARAFVKEVANI--PR-VTPVAPFGACFN 336 (437)
Q Consensus 260 ~y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~--~~-~~~~~~~~~C~~ 336 (437)
+|.|+|++|+||++++++++..+++ +.+.+++||||||++++||+++|++++++|.+++... ++ ......+..||+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence 4899999999999999999888876 6667899999999999999999999999999998733 22 234566789999
Q ss_pred cCCCCCCCCCCCcCeEEEEEecCceEEEEcCCCeEEEeCCCeEEEEEEeCCCCCCCceeechhhccceEEEEeCCCCeEE
Q 036132 337 STFVGSTRVGPAVPQIDLVLQSNTVIWRIFGANSMVQVRDDVLCLGFVDGGVNPRTSIVIGGHQLEDNLLQFDLATSRLG 416 (437)
Q Consensus 337 ~~~~~~~~~~~~~P~l~f~f~g~~~~~~v~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvFD~e~~rIG 416 (437)
.+.......+..+|+|+|+|.+ +.+|+|++++|++...++..|+++........+..|||..+|+++.++||++++|||
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~-ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEG-GADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GGCS-EETTEESS--EEEEETT-SEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred ccccccccccccCCeEEEEEeC-CcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 8773222234789999999997 689999999999999888999999987222346789999999999999999999999
Q ss_pred Eee
Q 036132 417 FSS 419 (437)
Q Consensus 417 fa~ 419 (437)
|+|
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.78 E-value=1.4e-18 Score=144.42 Aligned_cols=107 Identities=29% Similarity=0.313 Sum_probs=78.5
Q ss_pred EEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccC-CccccCCCCCCCCCCCCCCeeeeecCC
Q 036132 47 TQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSK-SCVQSCFSPPRPGCNNDTCAHLPDNTI 125 (437)
Q Consensus 47 ~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~-~c~~~~~~~~~~~~~~~~~~~~~~Y~~ 125 (437)
++|.||||||+++|+|||||+++||+|..|. .|. |.....+ .+. .++++....|.|.+.|+
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~--------~~~---~~~~~~~~~~~------~sst~~~~~~~~~~~Y~- 62 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ--------SLA---IYSHSSYDDPS------ASSTYSDNGCTFSITYG- 62 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC--------Ccc---cccccccCCcC------CCCCCCCCCcEEEEEeC-
Confidence 4799999999999999999999999998762 111 1111111 111 12223456799999997
Q ss_pred CCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccCC-CCCCcceEeec
Q 036132 126 TNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLEG-LASGVKGMAGL 181 (437)
Q Consensus 126 d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~~-~~~~~~GIlGL 181 (437)
++ .+.|.+++|+|++++. .++++.|||++...... .....+|||||
T Consensus 63 ~g-~~~g~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 63 TG-SLSGGLSTDTVSIGDI---------EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CC-eEEEEEEEEEEEECCE---------EECCEEEEEEEecCCccccccccccccCC
Confidence 75 5789999999999875 68899999999874332 22468999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.61 E-value=0.0002 Score=57.07 Aligned_cols=92 Identities=15% Similarity=0.185 Sum_probs=60.6
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCCCCCCCCCeeeeec
Q 036132 44 QYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCNNDTCAHLPDN 123 (437)
Q Consensus 44 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~Y 123 (437)
.|++++.|+. +++++++||||+.+|+.... .+ .+.. . ........+..
T Consensus 2 ~~~v~v~i~~--~~~~~llDTGa~~s~i~~~~------~~-------~l~~-~----------------~~~~~~~~~~~ 49 (96)
T cd05483 2 HFVVPVTING--QPVRFLLDTGASTTVISEEL------AE-------RLGL-P----------------LTLGGKVTVQT 49 (96)
T ss_pred cEEEEEEECC--EEEEEEEECCCCcEEcCHHH------HH-------HcCC-C----------------ccCCCcEEEEe
Confidence 5899999995 99999999999999997320 00 0100 0 01112344555
Q ss_pred CCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccCCCCCCcceEeecC
Q 036132 124 TITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLEGLASGVKGMAGLG 182 (437)
Q Consensus 124 ~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg 182 (437)
+ ++.........+.+.+++. ++.++.+....... . ..+||||+.
T Consensus 50 ~-~G~~~~~~~~~~~i~ig~~---------~~~~~~~~v~d~~~--~---~~~gIlG~d 93 (96)
T cd05483 50 A-NGRVRAARVRLDSLQIGGI---------TLRNVPAVVLPGDA--L---GVDGLLGMD 93 (96)
T ss_pred c-CCCccceEEEcceEEECCc---------EEeccEEEEeCCcc--c---CCceEeChH
Confidence 4 5666666666888899875 56677776665541 1 479999985
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.37 E-value=0.022 Score=48.01 Aligned_cols=101 Identities=12% Similarity=0.100 Sum_probs=62.5
Q ss_pred EeEeeCCCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCcccccCCCccccccccCCccccCCCCCCCCCC
Q 036132 34 LPVTKDASTLQYVTQINQRTPLVPVKVTLDLGGQFLWVDCDQGYVSSSYKPVRCRSAQCNLARSKSCVQSCFSPPRPGCN 113 (437)
Q Consensus 34 ~Pl~~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~Sst~~~~~c~~~~c~~~~~~~c~~~~~~~~~~~~~ 113 (437)
+||..+ .++.|++++.|.. +++.+++|||++.+-++.+- -+.+.. .. .
T Consensus 2 ~~i~~~-~~g~~~v~~~InG--~~~~flVDTGAs~t~is~~~------A~~Lgl-----------~~------------~ 49 (121)
T TIGR02281 2 VQLAKD-GDGHFYATGRVNG--RNVRFLVDTGATSVALNEED------AQRLGL-----------DL------------N 49 (121)
T ss_pred EEEEEc-CCCeEEEEEEECC--EEEEEEEECCCCcEEcCHHH------HHHcCC-----------Cc------------c
Confidence 677763 6789999999987 79999999999998886320 000000 00 0
Q ss_pred CCCCeeeeecCCCCceeeeeEEEEEEEeeecCCCCccceeeeCceEEeccccCccCCCCCCcceEeecC
Q 036132 114 NDTCAHLPDNTITNTGTSGELSTDIVSIQSTDGKNLGRVVSVPNLAFACAATFLLEGLASGVKGMAGLG 182 (437)
Q Consensus 114 ~~~~~~~~~Y~~d~~~~~G~~~~D~~~~~~~~g~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg 182 (437)
.......+.= ..|........-|.+.+++. .+.|+.+..+... ...+|+||+.
T Consensus 50 ~~~~~~~~~t-a~G~~~~~~~~l~~l~iG~~---------~~~nv~~~v~~~~------~~~~~LLGm~ 102 (121)
T TIGR02281 50 RLGYTVTVST-ANGQIKAARVTLDRVAIGGI---------VVNDVDAMVAEGG------ALSESLLGMS 102 (121)
T ss_pred cCCceEEEEe-CCCcEEEEEEEeCEEEECCE---------EEeCcEEEEeCCC------cCCceEcCHH
Confidence 0011222222 23444444567788899876 6778887666543 1137999986
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.10 E-value=0.12 Score=40.17 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=20.1
Q ss_pred EEEEecCCCceEEEEEEcCCCceeee
Q 036132 47 TQINQRTPLVPVKVTLDLGGQFLWVD 72 (437)
Q Consensus 47 ~~i~iGtP~q~~~v~~DTGS~~~wv~ 72 (437)
+++.|+. +++++++|||++.+.+.
T Consensus 1 V~v~vng--~~~~~liDTGa~~~~i~ 24 (90)
T PF13650_consen 1 VPVKVNG--KPVRFLIDTGASISVIS 24 (90)
T ss_pred CEEEECC--EEEEEEEcCCCCcEEEC
Confidence 4677776 79999999999987775
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=92.17 E-value=1.5 Score=36.97 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=21.5
Q ss_pred eeechhhccceEEEEeCCCCeEE
Q 036132 394 IVIGGHQLEDNLLQFDLATSRLG 416 (437)
Q Consensus 394 ~ILG~~flr~~yvvFD~e~~rIG 416 (437)
.|||..||+.+-.+.|+++++|-
T Consensus 101 ~ILG~d~L~~~~~~ID~~~~~i~ 123 (124)
T cd05479 101 FLIGLDMLKRHQCVIDLKENVLR 123 (124)
T ss_pred EEecHHHHHhCCeEEECCCCEEE
Confidence 69999999999999999999875
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=91.91 E-value=1.4 Score=37.07 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=26.3
Q ss_pred CCccEEEEEEecCCCceEEEEEEcCCCceeee
Q 036132 41 STLQYVTQINQRTPLVPVKVTLDLGGQFLWVD 72 (437)
Q Consensus 41 ~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~ 72 (437)
....+++++.|+. +++.+++|||++.+++.
T Consensus 13 ~~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is 42 (124)
T cd05479 13 KVPMLYINVEING--VPVKAFVDSGAQMTIMS 42 (124)
T ss_pred eeeEEEEEEEECC--EEEEEEEeCCCceEEeC
Confidence 3457899999997 88999999999999986
No 32
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=89.32 E-value=0.4 Score=37.91 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=24.4
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeeeC
Q 036132 45 YVTQINQRTPLVPVKVTLDLGGQFLWVDC 73 (437)
Q Consensus 45 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~ 73 (437)
|++++.|+. +++.+.+||||+.+++.-
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~ 27 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISE 27 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCH
Confidence 578999998 899999999999999974
No 33
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=88.66 E-value=0.59 Score=40.17 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=25.1
Q ss_pred eeechhhccceEEEEeCCCCeEEEeec
Q 036132 394 IVIGGHQLEDNLLQFDLATSRLGFSSS 420 (437)
Q Consensus 394 ~ILG~~flr~~yvvFD~e~~rIGfa~~ 420 (437)
.|||..+|+.|..+-|+.+++|-|...
T Consensus 106 vILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 106 VILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eEeccchHHhCCCEEEccCCEEEEeCC
Confidence 699999999999999999999999853
No 34
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=81.98 E-value=2.4 Score=31.99 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=27.7
Q ss_pred CCccEEEEEEecCCCceEEEEEEcCCCceeeeC
Q 036132 41 STLQYVTQINQRTPLVPVKVTLDLGGQFLWVDC 73 (437)
Q Consensus 41 ~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~ 73 (437)
..+.+++++.||. +.+..++||||+...++.
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~ 35 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISE 35 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCH
Confidence 4678999999999 999999999999988864
No 35
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=79.78 E-value=13 Score=30.45 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.4
Q ss_pred ceeechhhccceEEEEeCCCCeE
Q 036132 393 SIVIGGHQLEDNLLQFDLATSRL 415 (437)
Q Consensus 393 ~~ILG~~flr~~yvvFD~e~~rI 415 (437)
..+||..||+.+-++-|+.++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 57999999999999999988763
No 36
>PF13650 Asp_protease_2: Aspartyl protease
Probab=78.62 E-value=2.9 Score=32.16 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=17.5
Q ss_pred cEEEeccCcceeecHHHHHHH
Q 036132 291 GTKISTVNPYTVLHTSIYNAL 311 (437)
Q Consensus 291 ~~iiDSGTt~~~lp~~~~~~l 311 (437)
.++||||++.+.+.++.++.+
T Consensus 11 ~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 11 RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEcCCCCcEEECHHHHHHc
Confidence 478999999999998776555
No 37
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=76.92 E-value=3.4 Score=32.91 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=23.7
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeeeC
Q 036132 44 QYVTQINQRTPLVPVKVTLDLGGQFLWVDC 73 (437)
Q Consensus 44 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~ 73 (437)
.-+++|.|.. +++++++||||+.+-++.
T Consensus 5 rp~i~v~i~g--~~i~~LlDTGA~vsiI~~ 32 (100)
T PF00077_consen 5 RPYITVKING--KKIKALLDTGADVSIISE 32 (100)
T ss_dssp SSEEEEEETT--EEEEEEEETTBSSEEESS
T ss_pred CceEEEeECC--EEEEEEEecCCCcceecc
Confidence 3467888888 899999999999988874
No 38
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=74.13 E-value=5.3 Score=31.37 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=23.9
Q ss_pred eEEEcCEEeccCCccccccccCCCcEEEeccCcceeecHHHHHHH
Q 036132 267 SIKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNAL 311 (437)
Q Consensus 267 ~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l 311 (437)
.+.|||+.+. ..||||++.+.++++.+..+
T Consensus 4 ~~~Ing~~i~---------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK---------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE---------------EEEcCCcceEEeCHHHHHHh
Confidence 4677887764 56999999999999877655
No 39
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=72.40 E-value=17 Score=33.33 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=43.3
Q ss_pred HHHHhccccccc-ccCCcceEEeEeeCCCCccEEEEEEecCCCceEEEEEEcCCCceeeeC
Q 036132 14 LVLFITPSLAQT-SFRPKALLLPVTKDASTLQYVTQINQRTPLVPVKVTLDLGGQFLWVDC 73 (437)
Q Consensus 14 ~~~~~~~~~~~~-~~~~~~~~~Pl~~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~ 73 (437)
+.....|+.+.+ ....+..++-|+++ .++.|.++..|-. |++..++|||-+.+-++-
T Consensus 75 v~~gl~P~~~~a~~~~~g~~~v~Lak~-~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~ 132 (215)
T COG3577 75 VLRGLNPGRAWATLVGDGYQEVSLAKS-RDGHFEANGRVNG--KKVDFLVDTGATSVALNE 132 (215)
T ss_pred HHhhcCCCCCccccCCCCceEEEEEec-CCCcEEEEEEECC--EEEEEEEecCcceeecCH
Confidence 344445666655 55556677888873 6889999999987 999999999999888863
No 40
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=71.50 E-value=6.9 Score=32.78 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=25.8
Q ss_pred CcceEEeEeeEEEcCEEeccCCccccccccCCCcEEEeccCcceeecHHHHHHH
Q 036132 258 SAEYFIGVKSIKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNAL 311 (437)
Q Consensus 258 ~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~l 311 (437)
..+|.+ .+++||+.+ ..+||||++.+.++++..+.+
T Consensus 9 ~g~~~v---~~~InG~~~---------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYA---TGRVNGRNV---------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEE---EEEECCEEE---------------EEEEECCCCcEEcCHHHHHHc
Confidence 455653 466788743 378999999999998765443
No 41
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=69.63 E-value=9.8 Score=28.56 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=17.4
Q ss_pred EEEeccCcceeecHHHHHHH
Q 036132 292 TKISTVNPYTVLHTSIYNAL 311 (437)
Q Consensus 292 ~iiDSGTt~~~lp~~~~~~l 311 (437)
+++|||++-.+++++..+.+
T Consensus 22 alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 22 ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEeCCCcceecCHHHHHHh
Confidence 78999999999999876655
No 42
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=67.20 E-value=11 Score=29.28 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=17.0
Q ss_pred cEEEeccCcceeecHHHHHHH
Q 036132 291 GTKISTVNPYTVLHTSIYNAL 311 (437)
Q Consensus 291 ~~iiDSGTt~~~lp~~~~~~l 311 (437)
.++||||++.+.++++....+
T Consensus 15 ~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 15 RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCCCcEEcCHHHHHHc
Confidence 478999999999998765443
No 43
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=63.17 E-value=11 Score=29.35 Aligned_cols=21 Identities=14% Similarity=0.006 Sum_probs=17.6
Q ss_pred cEEEeccCcceeecHHHHHHH
Q 036132 291 GTKISTVNPYTVLHTSIYNAL 311 (437)
Q Consensus 291 ~~iiDSGTt~~~lp~~~~~~l 311 (437)
..++|||.+.+.++++..+.+
T Consensus 11 ~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 11 VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEEECCCCeEEECHHHhhhc
Confidence 368999999999998877654
No 44
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=60.73 E-value=10 Score=29.86 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=20.2
Q ss_pred EEEecCCCceEEEEEEcCCCceeeeC
Q 036132 48 QINQRTPLVPVKVTLDLGGQFLWVDC 73 (437)
Q Consensus 48 ~i~iGtP~q~~~v~~DTGS~~~wv~~ 73 (437)
.+.|+. |.++.++|||++++-+.-
T Consensus 2 ~~~i~g--~~~~~llDTGAd~Tvi~~ 25 (87)
T cd05482 2 TLYING--KLFEGLLDTGADVSIIAE 25 (87)
T ss_pred EEEECC--EEEEEEEccCCCCeEEcc
Confidence 456675 999999999999999873
No 45
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=56.87 E-value=14 Score=29.21 Aligned_cols=16 Identities=6% Similarity=0.106 Sum_probs=14.0
Q ss_pred cEEEeccCcceeecHH
Q 036132 291 GTKISTVNPYTVLHTS 306 (437)
Q Consensus 291 ~~iiDSGTt~~~lp~~ 306 (437)
.++||||++.+.++++
T Consensus 18 ~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 18 KALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEETTBSSEEESSG
T ss_pred EEEEecCCCcceeccc
Confidence 3789999999999974
No 46
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=56.51 E-value=13 Score=28.97 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEecCCCceEEEEEEcCCCceeeeC
Q 036132 48 QINQRTPLVPVKVTLDLGGQFLWVDC 73 (437)
Q Consensus 48 ~i~iGtP~q~~~v~~DTGS~~~wv~~ 73 (437)
.+.|.. +++++++|||++.+-+..
T Consensus 2 ~v~InG--~~~~fLvDTGA~~tii~~ 25 (86)
T cd06095 2 TITVEG--VPIVFLVDTGATHSVLKS 25 (86)
T ss_pred EEEECC--EEEEEEEECCCCeEEECH
Confidence 355655 899999999999999974
No 47
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=55.12 E-value=55 Score=29.05 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=17.0
Q ss_pred cEEEeccCcceeecHHHHHHH
Q 036132 291 GTKISTVNPYTVLHTSIYNAL 311 (437)
Q Consensus 291 ~~iiDSGTt~~~lp~~~~~~l 311 (437)
.+++|||++..++.+++.+.+
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEeCCCccceeehhhHHhh
Confidence 588999999999988765444
No 48
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=49.28 E-value=15 Score=29.24 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=18.2
Q ss_pred cEEEeccCcceeecHHHHHHHH
Q 036132 291 GTKISTVNPYTVLHTSIYNALA 312 (437)
Q Consensus 291 ~~iiDSGTt~~~lp~~~~~~l~ 312 (437)
...+|||++...+|...|+.+-
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 4669999999999988776663
No 49
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=47.75 E-value=25 Score=33.69 Aligned_cols=43 Identities=12% Similarity=0.279 Sum_probs=29.2
Q ss_pred eEEeEeeCCCCccEEEE---EEecCC---CceEEEEEEcCCCceeeeCC
Q 036132 32 LLLPVTKDASTLQYVTQ---INQRTP---LVPVKVTLDLGGQFLWVDCD 74 (437)
Q Consensus 32 ~~~Pl~~~~~~~~y~~~---i~iGtP---~q~~~v~~DTGS~~~wv~~~ 74 (437)
.-+|+...+....|.++ |.||.- .....+++|||++++.+|.+
T Consensus 146 ~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 146 TWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred eecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 34566654334567766 588742 23467999999999999853
No 50
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=44.79 E-value=45 Score=30.70 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=26.3
Q ss_pred CCcceEEeEeeEEEcCEEeccCCccccccccCCCcEEEeccCcceeecHHHH
Q 036132 257 PSAEYFIGVKSIKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIY 308 (437)
Q Consensus 257 ~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~ 308 (437)
..+||. ....|||+.+. .++|||.|...++++..
T Consensus 102 ~~GHF~---a~~~VNGk~v~---------------fLVDTGATsVal~~~dA 135 (215)
T COG3577 102 RDGHFE---ANGRVNGKKVD---------------FLVDTGATSVALNEEDA 135 (215)
T ss_pred CCCcEE---EEEEECCEEEE---------------EEEecCcceeecCHHHH
Confidence 356776 45778888864 57999999999998654
No 51
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=42.84 E-value=18 Score=30.33 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=17.5
Q ss_pred EEEeccCc-ceeecHHHHHHH
Q 036132 292 TKISTVNP-YTVLHTSIYNAL 311 (437)
Q Consensus 292 ~iiDSGTt-~~~lp~~~~~~l 311 (437)
.+||||.+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 47999999 999999888776
No 52
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=40.26 E-value=40 Score=28.44 Aligned_cols=30 Identities=27% Similarity=0.237 Sum_probs=21.9
Q ss_pred eeEEEcCEEeccCCccccccccCCCcEEEeccCcceeecHHHHHH
Q 036132 266 KSIKINGNTVPLNTSLLSIDKEGVGGTKISTVNPYTVLHTSIYNA 310 (437)
Q Consensus 266 ~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~lp~~~~~~ 310 (437)
-.+++||+.+. +.||||+..+.++.+..+.
T Consensus 27 I~~~ing~~vk---------------A~VDtGAQ~tims~~~a~r 56 (124)
T PF09668_consen 27 INCKINGVPVK---------------AFVDTGAQSTIMSKSCAER 56 (124)
T ss_dssp EEEEETTEEEE---------------EEEETT-SS-EEEHHHHHH
T ss_pred EEEEECCEEEE---------------EEEeCCCCccccCHHHHHH
Confidence 35778887763 7899999999999877654
No 53
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=39.60 E-value=58 Score=28.89 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=27.7
Q ss_pred ceEEeEeeCCC--CccEEEEEEecCCCceEEEEEEcCCCceeeeC
Q 036132 31 ALLLPVTKDAS--TLQYVTQINQRTPLVPVKVTLDLGGQFLWVDC 73 (437)
Q Consensus 31 ~~~~Pl~~~~~--~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~ 73 (437)
.-+.|+.+... .+.=..++.++.-..+++++|||||....+..
T Consensus 17 ~~~~PIV~~~~~Pevg~T~~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 17 ITTCPIVHYIAIPEVGKTAIVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred eeeeeeEEEeeccccCcEEEEEEeecCcEEEEEEeCCCccceeeh
Confidence 34567766321 22333444444445899999999999888863
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=33.43 E-value=63 Score=27.27 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=21.6
Q ss_pred CccEEEEEEecCCCceEEEEEEcCCCceeee
Q 036132 42 TLQYVTQINQRTPLVPVKVTLDLGGQFLWVD 72 (437)
Q Consensus 42 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~ 72 (437)
....|++++|.. ++++..+|||+..+-++
T Consensus 22 v~mLyI~~~ing--~~vkA~VDtGAQ~tims 50 (124)
T PF09668_consen 22 VSMLYINCKING--VPVKAFVDTGAQSTIMS 50 (124)
T ss_dssp ----EEEEEETT--EEEEEEEETT-SS-EEE
T ss_pred cceEEEEEEECC--EEEEEEEeCCCCccccC
Confidence 558899999999 99999999999988886
No 55
>PLN03146 aspartyl protease family protein; Provisional
Probab=28.01 E-value=59 Score=33.58 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=28.8
Q ss_pred ceEEeEeeCCCCccEEEE---EEecCC-----Cce------EEEEEEcCCCceeeeC
Q 036132 31 ALLLPVTKDASTLQYVTQ---INQRTP-----LVP------VKVTLDLGGQFLWVDC 73 (437)
Q Consensus 31 ~~~~Pl~~~~~~~~y~~~---i~iGtP-----~q~------~~v~~DTGS~~~wv~~ 73 (437)
....|+........|+++ |.||.- +.. -.++||||+.++++|-
T Consensus 267 ~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~ 323 (431)
T PLN03146 267 VVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPS 323 (431)
T ss_pred ceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCH
Confidence 345687653334567776 588862 111 2589999999999984
No 56
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=27.88 E-value=96 Score=29.34 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=29.2
Q ss_pred cceEEeEeeCC-CCccEEEE---EEecCC-------------CceEEEEEEcCCCceeeeC
Q 036132 30 KALLLPVTKDA-STLQYVTQ---INQRTP-------------LVPVKVTLDLGGQFLWVDC 73 (437)
Q Consensus 30 ~~~~~Pl~~~~-~~~~y~~~---i~iGtP-------------~q~~~v~~DTGS~~~wv~~ 73 (437)
+-.-+|+...+ ....|.++ |.||.- .....+++|||++++.+|-
T Consensus 132 ~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~ 192 (265)
T cd05476 132 GVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPD 192 (265)
T ss_pred CceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCc
Confidence 34566766532 24567665 678862 1245689999999999984
No 57
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=27.66 E-value=85 Score=29.54 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=29.6
Q ss_pred ceEEeEeeCCCCccEEEE---EEecC-----CCceEEEEEEcCCCceeeeCC
Q 036132 31 ALLLPVTKDASTLQYVTQ---INQRT-----PLVPVKVTLDLGGQFLWVDCD 74 (437)
Q Consensus 31 ~~~~Pl~~~~~~~~y~~~---i~iGt-----P~q~~~v~~DTGS~~~wv~~~ 74 (437)
...+|+... ....|.+. |.||. ......++||||+..+++|..
T Consensus 169 ~~~~p~~~~-~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~ 219 (283)
T cd05471 169 LTYTPVVSN-GPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSS 219 (283)
T ss_pred eEEEecCCC-CCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHH
Confidence 345555542 25566665 56775 246789999999999999853
No 58
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=26.64 E-value=64 Score=31.12 Aligned_cols=44 Identities=16% Similarity=0.087 Sum_probs=29.2
Q ss_pred cceEEeEeeCCC-CccEEEE---EEecCCC--------ceEEEEEEcCCCceeeeC
Q 036132 30 KALLLPVTKDAS-TLQYVTQ---INQRTPL--------VPVKVTLDLGGQFLWVDC 73 (437)
Q Consensus 30 ~~~~~Pl~~~~~-~~~y~~~---i~iGtP~--------q~~~v~~DTGS~~~wv~~ 73 (437)
.-..+|+..... ...|.++ |.||... ....+++|||++++++|-
T Consensus 132 ~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~ 187 (299)
T cd05472 132 GASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPP 187 (299)
T ss_pred CceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCH
Confidence 345567665432 3567766 6787532 223689999999999984
No 59
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=25.41 E-value=82 Score=30.04 Aligned_cols=39 Identities=13% Similarity=0.062 Sum_probs=26.2
Q ss_pred EEeEeeCCCCccEEEE---EEecCC----CceEEEEEEcCCCceeeeC
Q 036132 33 LLPVTKDASTLQYVTQ---INQRTP----LVPVKVTLDLGGQFLWVDC 73 (437)
Q Consensus 33 ~~Pl~~~~~~~~y~~~---i~iGtP----~q~~~v~~DTGS~~~wv~~ 73 (437)
-+|+.. ....|.++ |.||.- .....++||||++.+++|-
T Consensus 169 ~~pi~~--~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~ 214 (278)
T cd06097 169 WTPVDN--SSGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPD 214 (278)
T ss_pred EEEccC--CCcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCH
Confidence 445443 23456655 567642 3567899999999999984
No 60
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=24.96 E-value=78 Score=30.30 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=23.1
Q ss_pred ccEEEE---EEecCC-------CceEEEEEEcCCCceeeeCC
Q 036132 43 LQYVTQ---INQRTP-------LVPVKVTLDLGGQFLWVDCD 74 (437)
Q Consensus 43 ~~y~~~---i~iGtP-------~q~~~v~~DTGS~~~wv~~~ 74 (437)
..|.++ |.+|.. .....++||||++.+++|-.
T Consensus 154 ~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~ 195 (295)
T cd05474 154 SELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSD 195 (295)
T ss_pred eEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHH
Confidence 456654 677753 24568899999999999843
No 61
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=24.78 E-value=72 Score=31.36 Aligned_cols=31 Identities=10% Similarity=0.101 Sum_probs=22.9
Q ss_pred ccEEEE---EEecCC------CceEEEEEEcCCCceeeeC
Q 036132 43 LQYVTQ---INQRTP------LVPVKVTLDLGGQFLWVDC 73 (437)
Q Consensus 43 ~~y~~~---i~iGtP------~q~~~v~~DTGS~~~wv~~ 73 (437)
..|.++ |.||.. ......++|||++++++|.
T Consensus 208 ~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs~~~lp~ 247 (326)
T cd06096 208 YYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTLSHFPE 247 (326)
T ss_pred ceEEEEEEEEEEcccccceecccCCCEEEeCCCCcccCCH
Confidence 456665 577753 2455789999999999984
No 62
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=24.39 E-value=4.5e+02 Score=24.20 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=19.9
Q ss_pred ceeechhhccceEEEEeCCCCeEEEee
Q 036132 393 SIVIGGHQLEDNLLQFDLATSRLGFSS 419 (437)
Q Consensus 393 ~~ILG~~flr~~yvvFD~e~~rIGfa~ 419 (437)
-.|||..|+|-|+=--+.+ .+|-|-.
T Consensus 92 d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 92 DIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 4799999999887666665 4677764
No 63
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=22.49 E-value=1e+02 Score=25.04 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=20.2
Q ss_pred EEEEEecCCCc----eEEEEEEcCCCcee-ee
Q 036132 46 VTQINQRTPLV----PVKVTLDLGGQFLW-VD 72 (437)
Q Consensus 46 ~~~i~iGtP~q----~~~v~~DTGS~~~w-v~ 72 (437)
++++.|..|.| ++..++|||.+..- ++
T Consensus 1 ~~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 1 TLDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred CEEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 36788888833 67899999987654 55
No 64
>PF15409 PH_8: Pleckstrin homology domain
Probab=22.47 E-value=2.3e+02 Score=22.45 Aligned_cols=29 Identities=14% Similarity=0.081 Sum_probs=23.1
Q ss_pred CcEEEeccCcceee---cHHHHHHHHHHHHHH
Q 036132 290 GGTKISTVNPYTVL---HTSIYNALARAFVKE 318 (437)
Q Consensus 290 ~~~iiDSGTt~~~l---p~~~~~~l~~~l~~~ 318 (437)
....||||....+| .+..|+.++++|..+
T Consensus 57 ~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 57 RRIDIDSGDEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred CEEEEEcCCeEEEEEcCCHHHHHHHHHHHHhc
Confidence 46779999998887 466788888888753
No 65
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=21.65 E-value=1.3e+02 Score=30.46 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=29.1
Q ss_pred ceEEeEeeCCCCccEEEE---EEecC----CCce-----EEEEEEcCCCceeeeC
Q 036132 31 ALLLPVTKDASTLQYVTQ---INQRT----PLVP-----VKVTLDLGGQFLWVDC 73 (437)
Q Consensus 31 ~~~~Pl~~~~~~~~y~~~---i~iGt----P~q~-----~~v~~DTGS~~~wv~~ 73 (437)
-.-+||..... ..|.+. |.||. ++.. ..+++|||++++++|.
T Consensus 231 l~~tPl~~~~~-~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiDSGTs~t~lp~ 284 (398)
T KOG1339|consen 231 LTYTPLLSNPS-TYYQVNLDGISVGGKRPIGSSLFCTDGGGAIIDSGTSLTYLPT 284 (398)
T ss_pred eEEEeeccCCC-ccEEEEEeEEEECCccCCCcceEecCCCCEEEECCcceeeccH
Confidence 34678887443 467665 66885 3222 4579999999999985
Done!