BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036133
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 133 bits (334), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 100/166 (60%), Gaps = 5/166 (3%)
Query: 12 YDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISV 71
YDVFLSFRG DTR +F LY L R+ I+TF DD+E+ G SP L + IE S+ +V
Sbjct: 9 YDVFLSFRGHDTRHNFISFLYKELVRRS-IRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 72 VIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQ 131
V+ S++YA+S WCL+ELV I++ + V+P+FY V P+ VR QTG F K
Sbjct: 68 VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFK--KHA 125
Query: 132 FKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKK 177
+E PE V KWR AL + L+G S D++LV KI ++ K
Sbjct: 126 SREDPEKVLKWRQALTNFAQLSGDCSGD--DDSKLVDKIANEISNK 169
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 132 bits (332), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 99/170 (58%), Gaps = 4/170 (2%)
Query: 12 YDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISV 71
Y+VFLSFRG DTR FT LY +L R KI TF DD+E+ +G EI P LL AI+ SKI V
Sbjct: 36 YEVFLSFRGPDTREQFTDFLYQSL-RRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 72 VIFSKDYASSKWCLNELVKILECKHTNG-QIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQ 130
I S YA SKWCL EL +I+ + + +I++P+FY V PSDVRHQTG + F +
Sbjct: 95 PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 131 QFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVEDVLKKMEK 180
+F + +Q W+ AL + L G K + K+ D+ + K
Sbjct: 155 KFDG--QTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHISK 202
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 12 YDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISV 71
+D+F+S ED + F L + L + + DD +R GD + ++ + S+ +
Sbjct: 21 HDIFISHAWED-KADFVEALAHTLRA-AGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGI 78
Query: 72 VIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDV 114
V+ S + +W EL + + + + ++P+++ VS +V
Sbjct: 79 VVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEV 121
>pdb|2VS0|A Chain A, Structural Analysis Of Homodimeric Staphylococcal Aureus
Virulence Factor Esxa
pdb|2VS0|B Chain B, Structural Analysis Of Homodimeric Staphylococcal Aureus
Virulence Factor Esxa
Length = 97
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 110 SPSDVRHQTGSFGHGFDQLKQQF----KEKPEMVQKWRGALIETSHLAGHESTKFRHDAQ 165
SP ++R ++ S+G G DQ++Q + + E+ W G ++F Q
Sbjct: 7 SPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAF----------SRFEEQFQ 56
Query: 166 LVSKIVEDVLKKMEKI 181
+S VE + +E+I
Sbjct: 57 QLSPKVEKFAQLLEEI 72
>pdb|2VRZ|A Chain A, Structural Analysis Of Homodimeric Staphylococcal Aureus
Esxa
pdb|2VRZ|B Chain B, Structural Analysis Of Homodimeric Staphylococcal Aureus
Esxa
Length = 99
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 110 SPSDVRHQTGSFGHGFDQLKQQF----KEKPEMVQKWRGALIETSHLAGHESTKFRHDAQ 165
SP ++R ++ S+G G DQ++Q + + E+ W G ++F Q
Sbjct: 9 SPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAF----------SRFEEQFQ 58
Query: 166 LVSKIVEDVLKKMEKI 181
+S VE + +E+I
Sbjct: 59 QLSPKVEKFAQLLEEI 74
>pdb|3RGW|L Chain L, Crystal Structure At 1.5 A Resolution Of An H2-Reduced,
O2-Tolerant Hydrogenase From Ralstonia Eutropha Unmasks
A Novel Iron-Sulfur Cluster
Length = 603
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 79 ASSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSF 121
A+ + L ++I + + N Q V+P ++ SP D + Q G+F
Sbjct: 527 AAPRGALGHWIRIKDGRIENYQCVVPTTWNGSPRDYKGQIGAF 569
>pdb|2FN0|A Chain A, Crystal Structure Of Yersinia Enterocolitica Salicylate
Synthase (Irp9)
pdb|2FN0|B Chain B, Crystal Structure Of Yersinia Enterocolitica Salicylate
Synthase (Irp9)
pdb|2FN1|A Chain A, Crystal Structures Of Yersinia Enterocolitica Salicylate
Synthase (Irp9) In Complex With The Reaction Products
Salicylate And Pyruvate
pdb|2FN1|B Chain B, Crystal Structures Of Yersinia Enterocolitica Salicylate
Synthase (Irp9) In Complex With The Reaction Products
Salicylate And Pyruvate
Length = 437
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 23 TRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKI 69
+R+ L Y T +++F+ +E R SP L+ ++ G+K+
Sbjct: 207 SRIDMPATLLYGRQANTPVRSFMFRQEGREALGFSPELVMSVTGNKV 253
>pdb|4DRF|A Chain A, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4DRF|C Chain C, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4E6N|A Chain A, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4E6N|C Chain C, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
Length = 427
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 80 SSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPEMV 139
S + L+E VK+L+ N + DV QT ++L Q+F E+ EM+
Sbjct: 186 SGRVVLDEAVKLLKQASLNKTVSF---------DVSRQTSGKNADINELLQRFTERSEMM 236
Query: 140 QKW 142
QK+
Sbjct: 237 QKY 239
>pdb|2REZ|A Chain A, Tetracenomycin Aro/cyc Nai Structure
Length = 157
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 130 QQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVED 173
Q+F KP GA + +H+ H +T R + + + KI+ED
Sbjct: 113 QEFDMKP-------GAPFDNAHMTAHLNTTTRANMERIKKIIED 149
>pdb|2JX3|A Chain A, Nmr Solution Structure Of The N-Terminal Domain Of Dek
Length = 131
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 112 SDVRHQTGSF-GHGFDQLKQQFKEKPEMVQKWRGALIET 149
S ++ G F G F++ Q+K+K EM++K+R A++++
Sbjct: 44 SSLKKNVGQFSGFPFEKGSVQYKKKEEMLKKFRNAMLKS 82
>pdb|3TVQ|A Chain A, Crystal Structure Of Tcm AroCYC COMPLEXED WITH
TRANS-Dihidroquercetin
Length = 169
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 130 QQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVED 173
Q+F KP GA + +H+ H +T R + + + KI+ED
Sbjct: 110 QEFDMKP-------GAPFDNAHMTAHLNTTTRANMERIKKIIED 146
>pdb|3TY9|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|C Chain C, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|D Chain D, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
Length = 393
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 80 SSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPEMV 139
S + L+E VK+L+ N + DV QT ++L Q+F E+ EM+
Sbjct: 152 SGRVVLDEAVKLLKQASLNKTVSF---------DVSRQTSGKNADINELLQRFTERSEMM 202
Query: 140 QKW 142
QK+
Sbjct: 203 QKY 205
>pdb|3TY8|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Apo Form
pdb|3TY8|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Apo Form
Length = 413
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 80 SSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPEMV 139
S + L+E VK+L+ N + DV QT ++L Q+F E+ EM+
Sbjct: 172 SGRVVLDEAVKLLKQASLNKTVSF---------DVSRQTSGKNADINELLQRFTERSEMM 222
Query: 140 QKW 142
QK+
Sbjct: 223 QKY 225
>pdb|3TY5|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain In
Complex With Atp
pdb|3TY5|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain In
Complex With Atp
Length = 413
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 80 SSKWCLNELVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPEMV 139
S + L+E VK+L+ N + DV QT ++L Q+F E+ EM+
Sbjct: 172 SGRVVLDEAVKLLKQASLNKTVSF---------DVSRQTSGKNADINELLQRFTERSEMM 222
Query: 140 QKW 142
QK+
Sbjct: 223 QKY 225
>pdb|2RER|A Chain A, Crystal Structure Of The AromataseCYCLASE DOMAIN OF TCMN
From Streptomyces Glaucescens
Length = 173
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 130 QQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVED 173
Q+F KP GA + +H+ H +T R + + + KI+ED
Sbjct: 113 QEFDMKP-------GAPFDNAHMTAHLNTTTRANMERIKKIIED 149
>pdb|2RES|A Chain A, Tetracenomycin AroCYC MUTANT R69A
Length = 173
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 130 QQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLVSKIVED 173
Q+F KP GA + +H+ H +T R + + + KI+ED
Sbjct: 113 QEFDMKP-------GAPFDNAHMTAHLNTTTRANMERIKKIIED 149
>pdb|2E2Y|A Chain A, Crystal Structure Of F43wH64DV68I MYOGLOBIN
Length = 154
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 100 QIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPEMVQKW 142
Q+V+ V+ V +DV GHG D L + FK PE ++KW
Sbjct: 9 QLVLHVWAKVE-ADVA------GHGQDILIRLFKSHPETLEKW 44
>pdb|1YGA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
pdb|1YGA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
Length = 342
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 7/38 (18%)
Query: 19 RGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEI 56
RG+ T ++ T H Y+NLN K+K+ E+ RG E+
Sbjct: 165 RGDATPINMTNHSYFNLN---KVKS----EKSIRGTEV 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,200,301
Number of Sequences: 62578
Number of extensions: 209280
Number of successful extensions: 672
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 23
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)