Query 036133
Match_columns 182
No_of_seqs 212 out of 1500
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 16:36:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 9.1E-61 3.1E-65 372.2 12.8 169 8-181 5-173 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 1.7E-60 5.8E-65 377.1 13.5 169 9-180 33-202 (204)
3 3h16_A TIR protein; bacteria T 100.0 7.2E-37 2.4E-41 233.1 4.7 118 9-128 18-135 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 8.4E-32 2.9E-36 203.8 1.1 130 8-146 7-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 3.6E-27 1.2E-31 178.7 2.6 104 8-114 2-110 (149)
6 1t3g_A X-linked interleukin-1 99.9 2.8E-26 9.7E-31 175.6 6.6 102 10-112 1-115 (159)
7 2js7_A Myeloid differentiation 99.9 1.3E-26 4.6E-31 177.6 4.7 102 8-111 13-117 (160)
8 2j67_A TOLL like receptor 10; 99.9 3.5E-26 1.2E-30 178.1 4.8 102 8-111 32-136 (178)
9 3j0a_A TOLL-like receptor 5; m 99.8 5.7E-20 1.9E-24 170.7 7.0 102 9-112 668-775 (844)
10 1eiw_A Hypothetical protein MT 98.1 2.7E-06 9.4E-11 60.8 5.0 72 10-106 3-74 (111)
11 3hyn_A Putative signal transdu 97.2 0.0033 1.1E-07 48.4 9.7 97 25-125 31-136 (189)
12 2khz_A C-MYC-responsive protei 84.3 5.7 0.0002 29.3 8.2 94 1-105 3-109 (165)
13 2f62_A Nucleoside 2-deoxyribos 83.3 8.8 0.0003 28.4 8.8 71 25-96 26-99 (161)
14 4hlc_A DTMP kinase, thymidylat 83.2 9.9 0.00034 28.8 9.4 25 157-181 181-205 (205)
15 3hjn_A DTMP kinase, thymidylat 82.2 12 0.00041 28.0 9.5 152 15-178 2-193 (197)
16 4fyk_A Deoxyribonucleoside 5'- 78.0 16 0.00054 26.8 8.5 85 13-106 4-101 (152)
17 3ehd_A Uncharacterized conserv 73.8 19 0.00066 26.6 8.1 86 14-106 7-104 (162)
18 2yvq_A Carbamoyl-phosphate syn 71.3 8.6 0.00029 27.6 5.6 62 14-78 27-106 (143)
19 1byr_A Protein (endonuclease); 51.7 35 0.0012 23.7 5.8 26 53-78 12-37 (155)
20 2jug_A TUBC protein; docking d 51.2 16 0.00055 23.3 3.5 40 28-68 7-49 (78)
21 1s2d_A Purine trans deoxyribos 50.8 69 0.0024 23.5 7.4 85 13-105 9-115 (167)
22 3czp_A Putative polyphosphate 43.3 71 0.0024 27.8 7.4 164 11-179 41-238 (500)
23 4a8j_B Elongator complex prote 40.3 69 0.0024 25.7 6.2 70 39-113 67-142 (270)
24 1sc3_B Interleukin-1 beta conv 37.2 10 0.00036 25.0 0.8 23 15-37 21-43 (88)
25 1qey_A MNT-C, protein (regulat 36.9 30 0.001 18.3 2.4 18 163-180 11-28 (31)
26 1f8y_A Nucleoside 2-deoxyribos 35.6 1.1E+02 0.0037 22.2 6.3 85 13-105 5-112 (157)
27 2ql9_B Caspase-7; cysteine pro 33.3 10 0.00035 25.4 0.3 23 15-37 23-45 (97)
28 1qtn_B Caspase-8; apoptosis, d 32.6 9.2 0.00032 25.6 -0.0 29 9-37 10-47 (95)
29 3dt5_A Uncharacterized protein 32.5 14 0.00048 25.2 0.9 34 77-110 36-73 (135)
30 4hde_A SCO1/SENC family lipopr 31.8 24 0.00083 25.4 2.2 55 52-112 21-79 (170)
31 1v95_A Nuclear receptor coacti 30.8 1.2E+02 0.004 21.5 5.6 46 25-73 21-67 (130)
32 2dko_B Caspase-3; low barrier 30.1 12 0.00042 25.3 0.3 23 15-37 29-51 (103)
33 1pyo_B Caspase-2; apoptosis, c 29.6 13 0.00044 25.3 0.3 23 15-37 27-49 (105)
34 3czq_A Putative polyphosphate 29.0 58 0.002 26.5 4.2 100 13-114 86-204 (304)
35 2i4r_A V-type ATP synthase sub 27.9 1.3E+02 0.0043 20.2 5.2 44 33-80 22-65 (102)
36 1evl_A Threonyl-tRNA synthetas 27.6 1.3E+02 0.0045 24.7 6.4 57 11-73 298-355 (401)
37 4a6h_A Phosphatidylinositol 4, 27.3 34 0.0012 23.5 2.2 20 134-153 101-120 (120)
38 1wu7_A Histidyl-tRNA synthetas 25.4 1.6E+02 0.0054 24.5 6.5 57 11-73 332-389 (434)
39 2xzd_B Caspase-3; hydrolase-pr 24.4 19 0.00065 25.1 0.4 23 15-37 28-50 (118)
40 1v5p_A Pleckstrin homology dom 23.9 48 0.0017 22.8 2.5 20 134-153 103-122 (126)
41 3rjm_B Caspase-2; caspase-2, c 23.6 18 0.00063 25.2 0.2 23 15-37 28-50 (117)
42 2d00_A V-type ATP synthase sub 22.7 1.8E+02 0.0062 19.6 6.0 43 33-80 16-58 (109)
43 3aon_B V-type sodium ATPase su 22.6 1E+02 0.0035 21.1 4.0 50 33-90 15-64 (115)
44 1x1f_A Signal-transducing adap 22.0 1.1E+02 0.0036 21.8 4.1 46 134-179 96-142 (149)
45 2i4l_A Proline-tRNA ligase; al 21.6 38 0.0013 28.9 1.8 58 11-73 365-425 (458)
46 3tmk_A Thymidylate kinase; pho 21.5 2.6E+02 0.009 21.0 6.9 104 72-180 89-206 (216)
47 2gf9_A RAS-related protein RAB 20.8 2.2E+02 0.0075 19.8 9.2 19 60-78 88-106 (189)
48 2yry_A Pleckstrin homology dom 20.2 53 0.0018 21.6 2.1 19 134-152 103-121 (122)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=9.1e-61 Score=372.19 Aligned_cols=169 Identities=43% Similarity=0.748 Sum_probs=146.5
Q ss_pred CCCcccEEEecccccCccchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhHHHH
Q 036133 8 SSCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNE 87 (182)
Q Consensus 8 ~~~~ydVFIS~~~~D~~~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~E 87 (182)
.+++|||||||||+|+|+.|++||+.+|++ +||++|+|++++.+|+.|.++|.+||++|+++|+|||+||++|+||++|
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~-~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E 83 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVR-RSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE 83 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHH-TTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHH-CCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence 468899999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCceEEeEEeecCCcccccccCchHhHHHHHHhhhccChHHHHHHHHHHHhccccccceeCCCCChHHHH
Q 036133 88 LVKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLV 167 (182)
Q Consensus 88 L~~i~~~~~~~~~~viPIfy~v~p~~vr~q~g~f~~~f~~~~~~~~~~~~~v~~W~~aL~~v~~~~G~~~~~~~~e~~~i 167 (182)
|++|++|.++++++||||||+|+|++||+|+|.||++|.+|+++ .+++++++||.||++|++++||++. .+|+++|
T Consensus 84 L~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i 159 (176)
T 3jrn_A 84 LVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLV 159 (176)
T ss_dssp HHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHH
T ss_pred HHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC--CCHHHHH
Confidence 99999999889999999999999999999999999999999987 5789999999999999999999994 6799999
Q ss_pred HHHHHHHHHHhccc
Q 036133 168 SKIVEDVLKKMEKI 181 (182)
Q Consensus 168 ~~Iv~~v~~~l~~~ 181 (182)
++||++|+++|++.
T Consensus 160 ~~Iv~~v~~~l~~~ 173 (176)
T 3jrn_A 160 DKIANEISNKKTIY 173 (176)
T ss_dssp HHHHHHHHTTCC--
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999999863
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.7e-60 Score=377.06 Aligned_cols=169 Identities=44% Similarity=0.757 Sum_probs=162.3
Q ss_pred CCcccEEEecccccCccchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhHHHHH
Q 036133 9 SCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNEL 88 (182)
Q Consensus 9 ~~~ydVFIS~~~~D~~~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL 88 (182)
+++|||||||||+|+|+.|++||+.+|++ +||++|+|++++.+|+.|.++|.+||++|+++|+|||+||++|+||++||
T Consensus 33 ~~~yDVFISfrg~D~r~~Fv~~L~~aL~~-~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL 111 (204)
T 3ozi_A 33 SVEYEVFLSFRGPDTREQFTDFLYQSLRR-YKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMEL 111 (204)
T ss_dssp -CCCCEEEEECHHHHTTTHHHHHHHHHHH-TTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHH
T ss_pred CcCCeEEEeccccCCCHHHHHHHHHHHHH-CCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHH
Confidence 78999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhc-CCceEEeEEeecCCcccccccCchHhHHHHHHhhhccChHHHHHHHHHHHhccccccceeCCCCChHHHH
Q 036133 89 VKILECKHT-NGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPEMVQKWRGALIETSHLAGHESTKFRHDAQLV 167 (182)
Q Consensus 89 ~~i~~~~~~-~~~~viPIfy~v~p~~vr~q~g~f~~~f~~~~~~~~~~~~~v~~W~~aL~~v~~~~G~~~~~~~~e~~~i 167 (182)
++|++|+++ ++++||||||+|+|++||+|+|.||++|.+|++++ +++++++||.||++|++++||++.++.+|+++|
T Consensus 112 ~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~i 189 (204)
T 3ozi_A 112 AEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIA 189 (204)
T ss_dssp HHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEECTTSCHHHHH
T ss_pred HHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecCCCCCHHHHH
Confidence 999999865 68899999999999999999999999999999876 478999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 036133 168 SKIVEDVLKKMEK 180 (182)
Q Consensus 168 ~~Iv~~v~~~l~~ 180 (182)
++||++|+++|++
T Consensus 190 ~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 190 DKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999975
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=7.2e-37 Score=233.14 Aligned_cols=118 Identities=19% Similarity=0.365 Sum_probs=112.1
Q ss_pred CCcccEEEecccccCccchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhHHHHH
Q 036133 9 SCNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNEL 88 (182)
Q Consensus 9 ~~~ydVFIS~~~~D~~~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL 88 (182)
.++|||||||+++| +..|+.+|+.+|++ .|+++|+|++++.+|+.+.++|.++|++|+++|+|+|++|+.|.||++||
T Consensus 18 ~~~~dvFISy~~~D-~~~~~~~L~~~L~~-~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El 95 (154)
T 3h16_A 18 APPHDIFISHAWED-KADFVEALAHTLRA-AGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKEL 95 (154)
T ss_dssp CCSEEEEEEEEGGG-TTTTHHHHHHHHHH-HTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHH
T ss_pred CCCceEEEECcccC-hHHHHHHHHHHHHH-CCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHH
Confidence 68999999999999 56899999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCceEEeEEeecCCcccccccCchHhHHHHH
Q 036133 89 VKILECKHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQL 128 (182)
Q Consensus 89 ~~i~~~~~~~~~~viPIfy~v~p~~vr~q~g~f~~~f~~~ 128 (182)
..++++..+++.+||||||+++|++|++|.|.|+++|...
T Consensus 96 ~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 96 DGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp HHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred HHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence 9999998778889999999999999999999999887643
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.96 E-value=8.4e-32 Score=203.76 Aligned_cols=130 Identities=22% Similarity=0.341 Sum_probs=92.7
Q ss_pred CCCcccEEEecccccCccchHHHHHHHHhhc-CCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhHHH
Q 036133 8 SSCNYDVFLSFRGEDTRVSFTCHLYYNLNER-TKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLN 86 (182)
Q Consensus 8 ~~~~ydVFIS~~~~D~~~~fv~~L~~~L~~~-~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~ 86 (182)
.++.|||||||+++|+ .||.+|..+|++. .|+++|++++++.||+.+.++|.++|++|+++|+|+|++|++|+||+.
T Consensus 7 ~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~ 84 (146)
T 3ub2_A 7 WSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY 84 (146)
T ss_dssp TSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred CCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence 3789999999999995 5799999999983 499999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCceEEeEEeecCCccc----ccccCc----hHhHHHHHHhhhccChHHHHHHHHHH
Q 036133 87 ELVKILECKHTNGQIVIPVFYSVSPSDV----RHQTGS----FGHGFDQLKQQFKEKPEMVQKWRGAL 146 (182)
Q Consensus 87 EL~~i~~~~~~~~~~viPIfy~v~p~~v----r~q~g~----f~~~f~~~~~~~~~~~~~v~~W~~aL 146 (182)
|+..++.+...+..+||||||+++++++ +..... ...+|.++ .+.|.+|++||
T Consensus 85 El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~ 145 (146)
T 3ub2_A 85 QMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred HHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence 9999999864344478899999886555 433321 23444433 57789999886
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.93 E-value=3.6e-27 Score=178.71 Aligned_cols=104 Identities=19% Similarity=0.339 Sum_probs=92.8
Q ss_pred CCCcccEEEecccccCccchHHH-HHHHHhhcC--CcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhH
Q 036133 8 SSCNYDVFLSFRGEDTRVSFTCH-LYYNLNERT--KIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWC 84 (182)
Q Consensus 8 ~~~~ydVFIS~~~~D~~~~fv~~-L~~~L~~~~--gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc 84 (182)
+++.|||||||+++|. .||.+ |...|++ . |+++|+|++++.||+.+.++|.++|++|+++|+|+||+|++|.||
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~-~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc 78 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELEN-FNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWX 78 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTT-SSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhc-CCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchH
Confidence 3678999999999995 79986 9999998 5 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-hhcCCceEEeEEee-cCCccc
Q 036133 85 LNELVKILEC-KHTNGQIVIPVFYS-VSPSDV 114 (182)
Q Consensus 85 ~~EL~~i~~~-~~~~~~~viPIfy~-v~p~~v 114 (182)
+.|+..++.+ ..+++.+||||||+ +++..+
T Consensus 79 ~~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 79 KYELDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp HHHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence 9999999864 45567789999996 444334
No 6
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.93 E-value=2.8e-26 Score=175.61 Aligned_cols=102 Identities=22% Similarity=0.301 Sum_probs=91.2
Q ss_pred CcccEEEecccccC---------ccchHHHHHH-HHh-hcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCc
Q 036133 10 CNYDVFLSFRGEDT---------RVSFTCHLYY-NLN-ERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDY 78 (182)
Q Consensus 10 ~~ydVFIS~~~~D~---------~~~fv~~L~~-~L~-~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y 78 (182)
+.|||||||+++|+ +..||.+|.. .|+ + .|+++|++++|+.||+.+.++|.++|++|+++|+|+|++|
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~-~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y 79 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKH-YGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNY 79 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHT-SCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCC-CCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccch
Confidence 47999999999996 3679988665 699 7 9999999999999999999999999999999999999999
Q ss_pred c-CChhHHHHHHHHHHhh-hcCCceEEeEEeecCCc
Q 036133 79 A-SSKWCLNELVKILECK-HTNGQIVIPVFYSVSPS 112 (182)
Q Consensus 79 ~-~S~wc~~EL~~i~~~~-~~~~~~viPIfy~v~p~ 112 (182)
+ .|.||+.|+..++.+. .+++..||||+|+..+.
T Consensus 80 ~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 80 VVRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hhcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 7 9999999999999985 56688999999876554
No 7
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.93 E-value=1.3e-26 Score=177.60 Aligned_cols=102 Identities=23% Similarity=0.342 Sum_probs=92.1
Q ss_pred CCCcccEEEecccccCccchHHHHHHHHhhc-CCcceEeeCccccCCCcchHHHHHHhh-cCceEEEEeecCccCChhHH
Q 036133 8 SSCNYDVFLSFRGEDTRVSFTCHLYYNLNER-TKIKTFIDDEEVRRGDEISPALLNAIE-GSKISVVIFSKDYASSKWCL 85 (182)
Q Consensus 8 ~~~~ydVFIS~~~~D~~~~fv~~L~~~L~~~-~gi~~f~d~~~~~~G~~i~~~i~~aI~-~S~~~Ivv~S~~y~~S~wc~ 85 (182)
.++.|||||||+++| ..||.+|..+|++. .|+++|++++++.||+.+.++|.++|+ +|+++|+|+|++|++|.||+
T Consensus 13 ~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 13 MPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp CTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 368899999999999 58999999999983 469999999999999999999999999 79999999999999999999
Q ss_pred HHHHHHHHhh-hcCCceEEeEEeecCC
Q 036133 86 NELVKILECK-HTNGQIVIPVFYSVSP 111 (182)
Q Consensus 86 ~EL~~i~~~~-~~~~~~viPIfy~v~p 111 (182)
.|+..++++. ..++.+||||||+.-+
T Consensus 91 ~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 91 FQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 9999999875 4456789999997654
No 8
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.92 E-value=3.5e-26 Score=178.10 Aligned_cols=102 Identities=22% Similarity=0.392 Sum_probs=87.7
Q ss_pred CCCcccEEEecccccCccchHHH-HHHHHhhc-CCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhHH
Q 036133 8 SSCNYDVFLSFRGEDTRVSFTCH-LYYNLNER-TKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCL 85 (182)
Q Consensus 8 ~~~~ydVFIS~~~~D~~~~fv~~-L~~~L~~~-~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~ 85 (182)
.++.|||||||+++|. .||.. |...|+++ .|+++|++++++.||+.+.++|.++|++|+++|+|+||+|++|+||+
T Consensus 32 ~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~ 109 (178)
T 2j67_A 32 RNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCH 109 (178)
T ss_dssp CSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGG
T ss_pred CCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHH
Confidence 3789999999999994 79975 99999873 79999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hhcCCceEEeEEeecCC
Q 036133 86 NELVKILEC-KHTNGQIVIPVFYSVSP 111 (182)
Q Consensus 86 ~EL~~i~~~-~~~~~~~viPIfy~v~p 111 (182)
.|+..++.+ ..+++++||||||+.-|
T Consensus 110 ~El~~a~~~~~~~~~~~vIpV~~~~i~ 136 (178)
T 2j67_A 110 YEFYFAHHNLFHENSDHIILILLEPIP 136 (178)
T ss_dssp THHHHTTCC-------CEEEEESSCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence 999999976 35567799999997444
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=5.7e-20 Score=170.74 Aligned_cols=102 Identities=18% Similarity=0.340 Sum_probs=92.5
Q ss_pred CCcccEEEecccccCccchH-HHHHHHHhh----cCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChh
Q 036133 9 SCNYDVFLSFRGEDTRVSFT-CHLYYNLNE----RTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKW 83 (182)
Q Consensus 9 ~~~ydVFIS~~~~D~~~~fv-~~L~~~L~~----~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~w 83 (182)
.+.|||||||+++|. .|| ..|...|++ +.|+++|++++|+.||+.+.++|.++|++||++|+|+|++|+.|+|
T Consensus 668 ~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~w 745 (844)
T 3j0a_A 668 MYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGW 745 (844)
T ss_dssp CCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTS
T ss_pred ceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChH
Confidence 689999999999994 677 679999985 2689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-hcCCceEEeEEeecCCc
Q 036133 84 CLNELVKILECK-HTNGQIVIPVFYSVSPS 112 (182)
Q Consensus 84 c~~EL~~i~~~~-~~~~~~viPIfy~v~p~ 112 (182)
|..|+..++.+. ++++++||||||+..|.
T Consensus 746 c~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 746 CLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp TTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 999999998874 66788999999986654
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.13 E-value=2.7e-06 Score=60.75 Aligned_cols=72 Identities=8% Similarity=0.013 Sum_probs=53.3
Q ss_pred CcccEEEecccccCccchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhHHHHHH
Q 036133 10 CNYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNELV 89 (182)
Q Consensus 10 ~~ydVFIS~~~~D~~~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~ 89 (182)
..|.+||||...| . .+.|...|.+ .|+..- | ..|+.|.+.|++.++....|+||..|+.
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~-~~f~~~-~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~ 61 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQ-SGLEWR-P---------------ATPEDADAVIVLAGLWGTRRDEILGAVD 61 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHH-HCSCEE-E---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhC-CCCeee-c---------------CccccCCEEEEEeCCCcCCChHHHHHHH
Confidence 4699999999988 2 3444444444 555322 2 5789999999999999999999999988
Q ss_pred HHHHhhhcCCceEEeEE
Q 036133 90 KILECKHTNGQIVIPVF 106 (182)
Q Consensus 90 ~i~~~~~~~~~~viPIf 106 (182)
.+.+. +.+|+-|.
T Consensus 62 ~A~~~----gkpIigV~ 74 (111)
T 1eiw_A 62 LARKS----SKPIITVR 74 (111)
T ss_dssp HHTTT----TCCEEEEC
T ss_pred HHHHc----CCCEEEEE
Confidence 77653 44666664
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=97.17 E-value=0.0033 Score=48.41 Aligned_cols=97 Identities=21% Similarity=0.234 Sum_probs=67.9
Q ss_pred cchHHHHHHHHhhcCCcceEeeCcccc-------C-CCcchHHHHHHhhcCceEEEEeecCccCChhHHHHHHHHHHhhh
Q 036133 25 VSFTCHLYYNLNERTKIKTFIDDEEVR-------R-GDEISPALLNAIEGSKISVVIFSKDYASSKWCLNELVKILECKH 96 (182)
Q Consensus 25 ~~fv~~L~~~L~~~~gi~~f~d~~~~~-------~-G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~i~~~~~ 96 (182)
..+...|..--.+ ..+-.|.|-++.. . -..|.+.|.+.|..|+..|+++|++...|.|-..|+..+++
T Consensus 31 i~yy~lL~aWk~n-~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~--- 106 (189)
T 3hyn_A 31 FVYYNMLRMWKGE-DNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG--- 106 (189)
T ss_dssp HHHHHHHHHHHHH-CTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHcC-CCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---
Confidence 3456777777777 6666677765442 2 33577888899999999999999999999999999988872
Q ss_pred cCCceEEeEEeecC-CcccccccCchHhHH
Q 036133 97 TNGQIVIPVFYSVS-PSDVRHQTGSFGHGF 125 (182)
Q Consensus 97 ~~~~~viPIfy~v~-p~~vr~q~g~f~~~f 125 (182)
+.+.+||-|..+-. .+++..-.|.|....
T Consensus 107 ~~~~PII~Vy~~~~~~~~i~~~~g~~~~~~ 136 (189)
T 3hyn_A 107 TKGLPVIVIYPDYDKKSDIVDSNGNFKKQI 136 (189)
T ss_dssp TTCCCEEEEETTCCSGGGTBCTTSCBCHHH
T ss_pred hcCCcEEEEECCccccchhhhccccchhhH
Confidence 23557888875532 334544445544333
No 12
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=84.26 E-value=5.7 Score=29.28 Aligned_cols=94 Identities=19% Similarity=0.195 Sum_probs=57.1
Q ss_pred CCCCCCCCCCcccEEEec--ccccCccchHHHHHHHHhhcCCcceEeeCcc----ccCCCc-------chHHHHHHhhcC
Q 036133 1 MAASSSSSSCNYDVFLSF--RGEDTRVSFTCHLYYNLNERTKIKTFIDDEE----VRRGDE-------ISPALLNAIEGS 67 (182)
Q Consensus 1 m~s~ss~~~~~ydVFIS~--~~~D~~~~fv~~L~~~L~~~~gi~~f~d~~~----~~~G~~-------i~~~i~~aI~~S 67 (182)
||.++- +++..|||+= .+..........+...|++ .| .++.+..- -..|.. +...-.+.|++|
T Consensus 3 ~~~~~~--~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~-~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~a 78 (165)
T 2khz_A 3 MAASGE--QAPCSVYFCGSIRGGREDQALYARIVSRLRR-YG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQA 78 (165)
T ss_dssp CCCCSS--CCCCEEEEECCCSSCSHHHHHHHHHHHHHHH-HS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHC
T ss_pred cccCCC--CCCeEEEEECCCCCcHHHHHHHHHHHHHHHh-cC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhC
Confidence 555444 3445699982 2221112245789999999 89 77644321 112211 122334689999
Q ss_pred ceEEEEeecCccCChhHHHHHHHHHHhhhcCCceEEeE
Q 036133 68 KISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPV 105 (182)
Q Consensus 68 ~~~Ivv~S~~y~~S~wc~~EL~~i~~~~~~~~~~viPI 105 (182)
++.|++++ ..+.=+..|+..+....+ .|+-+
T Consensus 79 D~vva~~~---~~d~Gt~~EiGyA~algK----PVi~l 109 (165)
T 2khz_A 79 DVVVAEVT---QPSLGVGYELGRAVALGK----PILCL 109 (165)
T ss_dssp SEEEEECS---SCCHHHHHHHHHHHHTCS----SEEEE
T ss_pred CEEEEECC---CCCCCHHHHHHHHHHCCC----EEEEE
Confidence 99999987 456778899998876533 55544
No 13
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=83.31 E-value=8.8 Score=28.36 Aligned_cols=71 Identities=10% Similarity=0.038 Sum_probs=49.5
Q ss_pred cchHHHHHHHHhhcCCcceEeeCcccc-CCCcchHHHHHHhhcCceEEEEeec--CccCChhHHHHHHHHHHhhh
Q 036133 25 VSFTCHLYYNLNERTKIKTFIDDEEVR-RGDEISPALLNAIEGSKISVVIFSK--DYASSKWCLNELVKILECKH 96 (182)
Q Consensus 25 ~~fv~~L~~~L~~~~gi~~f~d~~~~~-~G~~i~~~i~~aI~~S~~~Ivv~S~--~y~~S~wc~~EL~~i~~~~~ 96 (182)
..+...+...|++ .|+.+|.-.++-. ....+...-.++|++|++.|.+++| .-..++=...|+..+....+
T Consensus 26 ~~~~~~l~~~l~~-~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgK 99 (161)
T 2f62_A 26 ASYYNKVRELLKK-ENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNK 99 (161)
T ss_dssp HHHHHHHHHHHHT-TTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH-CCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCC
Confidence 3678899999999 9999887432111 1223333336789999999999996 33345558889988876543
No 14
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=83.18 E-value=9.9 Score=28.80 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=16.7
Q ss_pred eCCCCChHHHHHHHHHHHHHHhccc
Q 036133 157 STKFRHDAQLVSKIVEDVLKKMEKI 181 (182)
Q Consensus 157 ~~~~~~e~~~i~~Iv~~v~~~l~~~ 181 (182)
++...+-.+..++|.+.|.+.|.+|
T Consensus 181 IDa~~~~e~V~~~i~~~i~~~L~~i 205 (205)
T 4hlc_A 181 VNADQPLENVVEDTYQTIIKYLEKI 205 (205)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHC--
T ss_pred EECCCCHHHHHHHHHHHHHHHHhcC
Confidence 3444556777888888888888775
No 15
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=82.19 E-value=12 Score=28.05 Aligned_cols=152 Identities=16% Similarity=0.202 Sum_probs=75.1
Q ss_pred EEecccccCc--cchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHHhhcC-------------------------
Q 036133 15 FLSFRGEDTR--VSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGS------------------------- 67 (182)
Q Consensus 15 FIS~~~~D~~--~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S------------------------- 67 (182)
||.+-|-|.. .+-+..|.+.|+. .|+++..-.. +.|..+...+.+.+...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~-~g~~v~~tre--P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~ 78 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEK-RGKKVILKRE--PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQY 78 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEES--SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEC--CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777642 4456789999999 9998765421 22333332222211100
Q ss_pred -ceEEEEeecCccCChhHHH--------HHHHHHHh-hhcCCceEEeEEeecCCcccccccCchHhHHHHHHhhhccChH
Q 036133 68 -KISVVIFSKDYASSKWCLN--------ELVKILEC-KHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQQFKEKPE 137 (182)
Q Consensus 68 -~~~Ivv~S~~y~~S~wc~~--------EL~~i~~~-~~~~~~~viPIfy~v~p~~vr~q~g~f~~~f~~~~~~~~~~~~ 137 (182)
...-+|++..|..|..... ++..-+.. ....-.+=+.+|++++|+......+. . .++ ++.+
T Consensus 79 L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~-~-------dr~-e~~e 149 (197)
T 3hjn_A 79 LSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGE-L-------NRF-EKRE 149 (197)
T ss_dssp HTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC-----------CTT-CCHH
T ss_pred HHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcC-c-------Ccc-ccHH
Confidence 0123567788877766543 22222222 21122244567789988764332221 0 111 1223
Q ss_pred HHHHHHHHHHhcccccc--ce-eCCCCChHHHHHHHHHHHHHHh
Q 036133 138 MVQKWRGALIETSHLAG--HE-STKFRHDAQLVSKIVEDVLKKM 178 (182)
Q Consensus 138 ~v~~W~~aL~~v~~~~G--~~-~~~~~~e~~~i~~Iv~~v~~~l 178 (182)
-.++-+++..+++.-.+ |. ++...+-.+.-++|.+.|.++|
T Consensus 150 f~~rv~~~y~~la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~rl 193 (197)
T 3hjn_A 150 FLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRRW 193 (197)
T ss_dssp HHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 34445555555554433 33 3444455556666666665554
No 16
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=78.04 E-value=16 Score=26.84 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=52.9
Q ss_pred cEEEe--cccccCccchHHHHHHHHhhcCCcceEeeC---ccc-cCCCc-------chHHHHHHhhcCceEEEEeecCcc
Q 036133 13 DVFLS--FRGEDTRVSFTCHLYYNLNERTKIKTFIDD---EEV-RRGDE-------ISPALLNAIEGSKISVVIFSKDYA 79 (182)
Q Consensus 13 dVFIS--~~~~D~~~~fv~~L~~~L~~~~gi~~f~d~---~~~-~~G~~-------i~~~i~~aI~~S~~~Ivv~S~~y~ 79 (182)
.|||+ +++.+....+...+.+.|++ .| .|+-.. .++ ..|+. +...-.++|++|++.|.+++ .
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~-~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~ 78 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRR-YG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---Q 78 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTT-TS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---S
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHH-cC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---C
Confidence 47776 34433234567899999999 99 675422 111 12221 34445568999999999988 5
Q ss_pred CChhHHHHHHHHHHhhhcCCceEEeEE
Q 036133 80 SSKWCLNELVKILECKHTNGQIVIPVF 106 (182)
Q Consensus 80 ~S~wc~~EL~~i~~~~~~~~~~viPIf 106 (182)
.|.=...|+..+....+ +|+-++
T Consensus 79 ~d~Gt~~EiG~A~algk----PV~~l~ 101 (152)
T 4fyk_A 79 PSLGVGYELGRAVALGK----PILCLF 101 (152)
T ss_dssp CCHHHHHHHHHHHHTTC----CEEEEE
T ss_pred CCCCHHHHHHHHHHcCC----eEEEEE
Confidence 56777889988876533 455444
No 17
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=73.84 E-value=19 Score=26.58 Aligned_cols=86 Identities=12% Similarity=0.221 Sum_probs=55.6
Q ss_pred EEEe---cccccCccchHHHHHHHHhhc-CCcceEeeCccc----cCCCcchHHHH----HHhhcCceEEEEeecCccCC
Q 036133 14 VFLS---FRGEDTRVSFTCHLYYNLNER-TKIKTFIDDEEV----RRGDEISPALL----NAIEGSKISVVIFSKDYASS 81 (182)
Q Consensus 14 VFIS---~~~~D~~~~fv~~L~~~L~~~-~gi~~f~d~~~~----~~G~~i~~~i~----~aI~~S~~~Ivv~S~~y~~S 81 (182)
|||. |+..+ ..+...+.++|+.. .|+.+|.-.++- .++..+...|. ++|++|++.|.++. ....+
T Consensus 7 IYLAGP~Fs~~q--~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D 83 (162)
T 3ehd_A 7 IYFAGPLFSQAD--LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTID 83 (162)
T ss_dssp EEEESCCSSHHH--HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCC
T ss_pred EEEECCCCCHHH--HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCC
Confidence 5555 43333 34678899999872 388888754332 12333443444 57999999999995 34467
Q ss_pred hhHHHHHHHHHHhhhcCCceEEeEE
Q 036133 82 KWCLNELVKILECKHTNGQIVIPVF 106 (182)
Q Consensus 82 ~wc~~EL~~i~~~~~~~~~~viPIf 106 (182)
+.+..|+..+....+ +|+.+.
T Consensus 84 ~Gt~~EiG~A~a~gk----PVi~~~ 104 (162)
T 3ehd_A 84 AGVASEIGVAYAKGI----PVVALY 104 (162)
T ss_dssp HHHHHHHHHHHHTTC----CEEEEC
T ss_pred CCHHHHHHHHHHCCC----EEEEEE
Confidence 888999988876543 555543
No 18
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=71.27 E-value=8.6 Score=27.62 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=38.6
Q ss_pred EEEecccccCccchHHHHHHHHhhcCCcceEeeC-------------ccc---cCC-C-cchHHHHHHhhcCceEEEEee
Q 036133 14 VFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDD-------------EEV---RRG-D-EISPALLNAIEGSKISVVIFS 75 (182)
Q Consensus 14 VFIS~~~~D~~~~fv~~L~~~L~~~~gi~~f~d~-------------~~~---~~G-~-~i~~~i~~aI~~S~~~Ivv~S 75 (182)
||||.+..|. .-+-.+...|.. .|++++--. ..+ .-| + .-.++|...|++-++.+||..
T Consensus 27 vliSv~d~dK--~~l~~~a~~l~~-lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt 103 (143)
T 2yvq_A 27 ILIGIQQSFR--PRFLGVAEQLHN-EGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINL 103 (143)
T ss_dssp EEEECCGGGH--HHHHHHHHHHHT-TTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEEC
T ss_pred EEEEecccch--HHHHHHHHHHHH-CCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEEC
Confidence 9999987763 334567778888 888776211 111 112 1 000467788888888888888
Q ss_pred cCc
Q 036133 76 KDY 78 (182)
Q Consensus 76 ~~y 78 (182)
|+-
T Consensus 104 ~~~ 106 (143)
T 2yvq_A 104 PNN 106 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 19
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=51.66 E-value=35 Score=23.72 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=13.7
Q ss_pred CCcchHHHHHHhhcCceEEEEeecCc
Q 036133 53 GDEISPALLNAIEGSKISVVIFSKDY 78 (182)
Q Consensus 53 G~~i~~~i~~aI~~S~~~Ivv~S~~y 78 (182)
++.+.+.+.+.|++++..|.+.++.+
T Consensus 12 ~~~~~~~~~~~i~~A~~~I~i~~~~~ 37 (155)
T 1byr_A 12 EGSARVLVLSAIDSAKTSIRMMAYSF 37 (155)
T ss_dssp TTHHHHHHHHHHHHCSSEEEEEESSB
T ss_pred CCcHHHHHHHHHHHHhhEEEEEEEEe
Confidence 34444455555555555555555444
No 20
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=51.19 E-value=16 Score=23.25 Aligned_cols=40 Identities=15% Similarity=0.368 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcCCcceEeeCcccc---CCCcchHHHHHHhhcCc
Q 036133 28 TCHLYYNLNERTKIKTFIDDEEVR---RGDEISPALLNAIEGSK 68 (182)
Q Consensus 28 v~~L~~~L~~~~gi~~f~d~~~~~---~G~~i~~~i~~aI~~S~ 68 (182)
+..|...|.+ .||.+|.+.+.+. |-..+.+++...+...+
T Consensus 7 ~~~ll~~l~~-~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K 49 (78)
T 2jug_A 7 AGALLAHAAS-LGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR 49 (78)
T ss_dssp HHHHHHHHHH-HTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH
T ss_pred HHHHHHHHHH-cCCEEEEECCEeeeecCccccCHHHHHHHHHHH
Confidence 4467789999 9999999987763 44567778877777654
No 21
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=50.81 E-value=69 Score=23.49 Aligned_cols=85 Identities=14% Similarity=0.154 Sum_probs=54.8
Q ss_pred cEEEe---cccccCccchHHHHHHHHhhcC--CcceEeeCcc-c--------cCC--------CcchHHHHHHhhcCceE
Q 036133 13 DVFLS---FRGEDTRVSFTCHLYYNLNERT--KIKTFIDDEE-V--------RRG--------DEISPALLNAIEGSKIS 70 (182)
Q Consensus 13 dVFIS---~~~~D~~~~fv~~L~~~L~~~~--gi~~f~d~~~-~--------~~G--------~~i~~~i~~aI~~S~~~ 70 (182)
.|||. |+..+ ..+...+...|++ . |+.+|.-.++ . ..| ..+...-.++|++|++.
T Consensus 9 kIYLAGP~F~~~~--~~~~~~~~~~L~~-~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~v 85 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ--RERAAKAKELLAK-NPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCG 85 (167)
T ss_dssp EEEEECCCSSHHH--HHHHHHHHHHHTT-CTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHh-CCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEE
Confidence 47776 43332 3567899999999 8 8888865431 1 111 12233344579999999
Q ss_pred EEEeecCccCChhHHHHHHHHHHhhhcCCceEEeE
Q 036133 71 VVIFSKDYASSKWCLNELVKILECKHTNGQIVIPV 105 (182)
Q Consensus 71 Ivv~S~~y~~S~wc~~EL~~i~~~~~~~~~~viPI 105 (182)
|.++...-. ++=+..|+..+....+ .|+-+
T Consensus 86 VA~ldg~~~-D~GTa~EiGyA~algK----PVv~l 115 (167)
T 1s2d_A 86 VFLYDMDQL-DDGSAFXIGFMRAMHK----PVILV 115 (167)
T ss_dssp EEEEESSSC-CHHHHHHHHHHHHTTC----CEEEE
T ss_pred EEECCCCCC-CCCceeehhhHhhCCC----eEEEE
Confidence 999987554 4567789888776543 55554
No 22
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=43.34 E-value=71 Score=27.79 Aligned_cols=164 Identities=9% Similarity=0.015 Sum_probs=83.0
Q ss_pred cccEEEecccccCc--cchHHHHHHHHhhcCCcceEee--CccccCCCcchHHHHHHhhcCceEEEEeecCccCCh----
Q 036133 11 NYDVFLSFRGEDTR--VSFTCHLYYNLNERTKIKTFID--DEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSK---- 82 (182)
Q Consensus 11 ~ydVFIS~~~~D~~--~~fv~~L~~~L~~~~gi~~f~d--~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~---- 82 (182)
.+-|+|-|-|-|.. .+-+.+|...|.. +|++|..- ..+-+.+..+-....+.+-. +--|+||-..+-+..
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~p-rg~~V~a~~~Pt~~E~~~~yl~R~~~~lP~-~G~IvIfdRSwYs~~~v~r 118 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDP-RLIEVQSFLRPSDEELERPPQWRFWRRLPP-KGRTGIFFGNWYSQMLYAR 118 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCG-GGEEEEECSSCCHHHHTSCTTHHHHHHCCC-TTCEEEEESCHHHHHHHHH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCc-cCCeEEEeCCCChhhccCChhhhHHHhCCC-CCeEEEEeCchhhHHHHHH
Confidence 35689999887763 4557889999999 99887652 22223344443333333333 334556555432211
Q ss_pred ---hHHH-H----HHHHHHh---hhcCCceEEeEEeecCCcccccccCchHhHHHHHHh---hhccChHHHHHHH-----
Q 036133 83 ---WCLN-E----LVKILEC---KHTNGQIVIPVFYSVSPSDVRHQTGSFGHGFDQLKQ---QFKEKPEMVQKWR----- 143 (182)
Q Consensus 83 ---wc~~-E----L~~i~~~---~~~~~~~viPIfy~v~p~~vr~q~g~f~~~f~~~~~---~~~~~~~~v~~W~----- 143 (182)
.|-. | +..+... ....|..++-+|+++++..-+.. |.+.-.+-.+ --..|-+....|.
T Consensus 119 v~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kR---l~~R~~~p~k~Wk~s~~D~~~~~~~~~Y~~a 195 (500)
T 3czp_A 119 VEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKER---LKALEKDPQHSWKLSPLDWKQSEVYDRFVHY 195 (500)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHC---C-------------CSSCTTSHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHH---HHHHhcCCcccCCCCHHHHHHHHhHHHHHHH
Confidence 2322 2 2222222 33467789999999998764432 2221111111 0112344455666
Q ss_pred --HHHHhc-cccccceeCCCCC----hHHHHHHHHHHHHHHhc
Q 036133 144 --GALIET-SHLAGHESTKFRH----DAQLVSKIVEDVLKKME 179 (182)
Q Consensus 144 --~aL~~v-~~~~G~~~~~~~~----e~~~i~~Iv~~v~~~l~ 179 (182)
.+|... +..+.|.+-+.++ ....++.|++.+...|.
T Consensus 196 ~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l~~~l~ 238 (500)
T 3czp_A 196 GERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQAALA 238 (500)
T ss_dssp HHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHHHHHHH
Confidence 333322 2334687766654 24455556555555543
No 23
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=40.35 E-value=69 Score=25.70 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=43.7
Q ss_pred CCcceEeeCccccCCCcchHHHHHHhh------cCceEEEEeecCccCChhHHHHHHHHHHhhhcCCceEEeEEeecCCc
Q 036133 39 TKIKTFIDDEEVRRGDEISPALLNAIE------GSKISVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPVFYSVSPS 112 (182)
Q Consensus 39 ~gi~~f~d~~~~~~G~~i~~~i~~aI~------~S~~~Ivv~S~~y~~S~wc~~EL~~i~~~~~~~~~~viPIfy~v~p~ 112 (182)
.+...|++.++. +-..+..+|..+.. ..+..|+|=|=||..+ ..|...+...-...-.++-||+..-|.
T Consensus 67 ~~ad~FI~a~~k-sl~~i~~eI~s~~p~~~~~~~~k~LVIIDSLN~l~~----~~L~~FlsSi~sP~~sLv~vYH~DvP~ 141 (270)
T 4a8j_B 67 SYCTQFIDATQM-DFVHLVKQIISYLPAATATQAKKHMVIIDSLNYIST----EYITRFLSEIASPHCTMVATYHKDIKD 141 (270)
T ss_dssp TTCSEEEETTSS-CHHHHHHHHHHTCC-----CCCCEEEEESCGGGSCG----GGHHHHHHHHCCTTEEEEEEEETTSCC
T ss_pred CCCCeeeEcCCC-CHHHHHHHHHHhCCCccCCCCcceEEEEecCcchhh----hhHHHHHHHhhcCCcEEEEEecCCCCC
Confidence 556677775432 22333333433332 2367999999999987 577777777655566788888855454
Q ss_pred c
Q 036133 113 D 113 (182)
Q Consensus 113 ~ 113 (182)
.
T Consensus 142 ~ 142 (270)
T 4a8j_B 142 E 142 (270)
T ss_dssp C
T ss_pred C
Confidence 4
No 24
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=37.19 E-value=10 Score=24.99 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=18.1
Q ss_pred EEecccccCccchHHHHHHHHhh
Q 036133 15 FLSFRGEDTRVSFTCHLYYNLNE 37 (182)
Q Consensus 15 FIS~~~~D~~~~fv~~L~~~L~~ 37 (182)
|+|||+...+.-|+..|++.|++
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~ 43 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQE 43 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHH
T ss_pred CEeeEcCCCCCHHHHHHHHHHHH
Confidence 56677666666799999999987
No 25
>1qey_A MNT-C, protein (regulatory protein MNT); oligomerization, transcriptional control, P22 MNT repressor, gene regulation; NMR {Enterobacteria phage P22} SCOP: h.2.1.1
Probab=36.95 E-value=30 Score=18.30 Aligned_cols=18 Identities=44% Similarity=0.595 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHhcc
Q 036133 163 DAQLVSKIVEDVLKKMEK 180 (182)
Q Consensus 163 e~~~i~~Iv~~v~~~l~~ 180 (182)
.+++|+++|=+.++.|.+
T Consensus 11 qse~vKk~vfdtLk~~Y~ 28 (31)
T 1qey_A 11 QSELVKKMVFDTLKDLYK 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 478889999888888753
No 26
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=35.64 E-value=1.1e+02 Score=22.16 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=53.6
Q ss_pred cEEEe---cccccCccchHHHHHHHHhhcCCc----ceEeeCcccc------------CCC----cchHHHHHHhhcCce
Q 036133 13 DVFLS---FRGEDTRVSFTCHLYYNLNERTKI----KTFIDDEEVR------------RGD----EISPALLNAIEGSKI 69 (182)
Q Consensus 13 dVFIS---~~~~D~~~~fv~~L~~~L~~~~gi----~~f~d~~~~~------------~G~----~i~~~i~~aI~~S~~ 69 (182)
.||+. |+... ..+...+...|+. .|. .+|.-.++-. ++. .+...-.++|++|++
T Consensus 5 kIYLAGP~F~~~q--~~~~~~~~~~L~~-~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~ 81 (157)
T 1f8y_A 5 TIYFGAGWFTDRQ--NKAYKEAMEALKE-NPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDI 81 (157)
T ss_dssp CEEEECCCSSHHH--HHHHHHHHHHHHH-CTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHH-CCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCE
Confidence 47776 44332 3567899999999 885 6766433211 111 223334457999999
Q ss_pred EEEEeecCccCChhHHHHHHHHHHhhhcCCceEEeE
Q 036133 70 SVVIFSKDYASSKWCLNELVKILECKHTNGQIVIPV 105 (182)
Q Consensus 70 ~Ivv~S~~y~~S~wc~~EL~~i~~~~~~~~~~viPI 105 (182)
.|.++...- .++=+..|+..+....+ .|+-+
T Consensus 82 vvA~ldg~~-~D~GT~~EiGyA~A~gk----PVv~~ 112 (157)
T 1f8y_A 82 MLGVYIPDE-EDVGLGMELGYALSQGK----YVLLV 112 (157)
T ss_dssp EEEECCGGG-CCHHHHHHHHHHHHTTC----EEEEE
T ss_pred EEEEcCCCC-CCccHHHHHHHHHHCCC----eEEEE
Confidence 999987443 34567789888876643 55554
No 27
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=33.29 E-value=10 Score=25.38 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=16.1
Q ss_pred EEecccccCccchHHHHHHHHhh
Q 036133 15 FLSFRGEDTRVSFTCHLYYNLNE 37 (182)
Q Consensus 15 FIS~~~~D~~~~fv~~L~~~L~~ 37 (182)
|+|||+.+.+--|+..|++.|++
T Consensus 23 ~~S~R~~~~GSwfIq~Lc~~l~~ 45 (97)
T 2ql9_B 23 YYSWRSPGRGSWFVQALCSILEE 45 (97)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHH
T ss_pred cEeeecCCCCCeeHHHHHHHHHH
Confidence 34455555556688999999987
No 28
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=32.62 E-value=9.2 Score=25.58 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=19.1
Q ss_pred CCcccEEEec---------ccccCccchHHHHHHHHhh
Q 036133 9 SCNYDVFLSF---------RGEDTRVSFTCHLYYNLNE 37 (182)
Q Consensus 9 ~~~ydVFIS~---------~~~D~~~~fv~~L~~~L~~ 37 (182)
+..-|.+++| |+.+.+.-|+..|++.|++
T Consensus 10 P~~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~ 47 (95)
T 1qtn_B 10 PDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRE 47 (95)
T ss_dssp CTTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHH
Confidence 4455666655 4444455688888888887
No 29
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=32.47 E-value=14 Score=25.23 Aligned_cols=34 Identities=21% Similarity=0.501 Sum_probs=22.9
Q ss_pred CccCChhHHHHHHHHHHhhhc-CC---ceEEeEEeecC
Q 036133 77 DYASSKWCLNELVKILECKHT-NG---QIVIPVFYSVS 110 (182)
Q Consensus 77 ~y~~S~wc~~EL~~i~~~~~~-~~---~~viPIfy~v~ 110 (182)
.|+-....-+|+..|+.|++- .| .+|+|.-++-.
T Consensus 36 syvytaqtedeietiitcrrylagnnllrvlpmhfkfk 73 (135)
T 3dt5_A 36 SYVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFK 73 (135)
T ss_dssp SSCCCTTHHHHHHHHHHTTGGGSCHHHHHHCCSCCGGG
T ss_pred hHheeccchhHHHHHHHHHHHhcccchhhhcchheeee
Confidence 466666778999999999652 22 26777765543
No 30
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=31.82 E-value=24 Score=25.36 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=29.8
Q ss_pred CCCcchHHHHHHhhcCceEEEEeecCccC-ChhHHH---HHHHHHHhhhcCCceEEeEEeecCCc
Q 036133 52 RGDEISPALLNAIEGSKISVVIFSKDYAS-SKWCLN---ELVKILECKHTNGQIVIPVFYSVSPS 112 (182)
Q Consensus 52 ~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~-S~wc~~---EL~~i~~~~~~~~~~viPIfy~v~p~ 112 (182)
-|+.+.-+ ..++ +..++-|- |.. ..||.. +|..+.+.....+..|..|+..++|.
T Consensus 21 ~G~~v~l~---d~~G-k~vll~F~--~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 21 DGKPFGTK---DLKG-KVWVADFM--FTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp TSCEEEHH---HHTT-SCEEEEEE--CTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred CCCEEeHH---HhCC-CEEEEEEE--CCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcc
Confidence 46666532 2344 44444432 332 237854 45555444444566678888888875
No 31
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=30.79 E-value=1.2e+02 Score=21.49 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=33.5
Q ss_pred cchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHH-hhcCceEEEE
Q 036133 25 VSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNA-IEGSKISVVI 73 (182)
Q Consensus 25 ~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~a-I~~S~~~Ivv 73 (182)
..++..+...|.. .|+++=+|.+ .+++.+.-.|.++ .+..-..+||
T Consensus 21 ~~YA~~V~~~L~~-~GiRvevD~~--r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 21 KDYAESVGRKVRD-LGMVVDLIFL--NTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp GHHHHHHHHHHHT-TTCCEEEEEC--TTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHHH-CCCEEEEecC--CCCCcHHHHHHHHHHcCCCEEEEE
Confidence 5789999999999 9999988752 2367777677765 3445555554
No 32
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=30.09 E-value=12 Score=25.32 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=15.6
Q ss_pred EEecccccCccchHHHHHHHHhh
Q 036133 15 FLSFRGEDTRVSFTCHLYYNLNE 37 (182)
Q Consensus 15 FIS~~~~D~~~~fv~~L~~~L~~ 37 (182)
|+|||+...+--|+..|++.|++
T Consensus 29 ~vS~R~~~~GSwfIq~Lc~~l~~ 51 (103)
T 2dko_B 29 YYSWRNSKDGSWFIQSLCAMLKQ 51 (103)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHH
T ss_pred cEeEEcCCCCCeeHHHHHHHHHH
Confidence 33445544455688999999987
No 33
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=29.57 E-value=13 Score=25.34 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=16.5
Q ss_pred EEecccccCccchHHHHHHHHhh
Q 036133 15 FLSFRGEDTRVSFTCHLYYNLNE 37 (182)
Q Consensus 15 FIS~~~~D~~~~fv~~L~~~L~~ 37 (182)
|+|||....+.-|+..|++.|++
T Consensus 27 ~~S~R~~~~GSwFIq~Lc~~l~~ 49 (105)
T 1pyo_B 27 TAAMRNTKRGSWYIEALAQVFSE 49 (105)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHHHH
Confidence 44555555556688999999987
No 34
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=28.99 E-value=58 Score=26.50 Aligned_cols=100 Identities=14% Similarity=0.202 Sum_probs=54.6
Q ss_pred cEEEecccccCc--cchHHHHHHHHhhcCCcceEeeCc--cccCCCcchHHHHHHhhcCceEEEEeecCccCCh------
Q 036133 13 DVFLSFRGEDTR--VSFTCHLYYNLNERTKIKTFIDDE--EVRRGDEISPALLNAIEGSKISVVIFSKDYASSK------ 82 (182)
Q Consensus 13 dVFIS~~~~D~~--~~fv~~L~~~L~~~~gi~~f~d~~--~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~------ 82 (182)
-|||-|-|-|.. .+-+.+|...|.. +|++|..-.. +-..+..+...+..++-. +--|+|+-..+-++.
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldp-rg~~V~~~~~Pt~eE~~~~yl~R~~~~LP~-~G~IvIfDRswYs~v~~~rv~ 163 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNP-RSARVVALTKPTETERGQWYFQRYVATFPT-AGEFVLFDRSWYNRAGVEPVM 163 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCT-TTEEEEECCSCCHHHHTSCTTHHHHTTCCC-TTCEEEEEECGGGGTTHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcc-cCCeEEEeCCcChHHHhchHHHHHHHhccc-CCeEEEEECCcchHHHHHHHh
Confidence 589999887753 4556889999999 9998765321 112223333334444422 234555554432221
Q ss_pred -hHHH-H----HHHHHH---hhhcCCceEEeEEeecCCccc
Q 036133 83 -WCLN-E----LVKILE---CKHTNGQIVIPVFYSVSPSDV 114 (182)
Q Consensus 83 -wc~~-E----L~~i~~---~~~~~~~~viPIfy~v~p~~v 114 (182)
.|-. | +..+.+ .....|..++-+|++++|..-
T Consensus 164 g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq 204 (304)
T 3czq_A 164 GFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQ 204 (304)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHH
Confidence 1211 1 222222 122356788889999998763
No 35
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=27.86 E-value=1.3e+02 Score=20.21 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=31.6
Q ss_pred HHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccC
Q 036133 33 YNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYAS 80 (182)
Q Consensus 33 ~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~ 80 (182)
..++- .|+..+... ..-+.+...+.+.+++.++.|++++++.+.
T Consensus 22 ~GFrL-aGi~~~~~~---~~~ee~~~~~~~l~~~~digIIlIte~ia~ 65 (102)
T 2i4r_A 22 IGFML-AGISDIYEV---TSDEEIVKAVEDVLKRDDVGVVIMKQEYLK 65 (102)
T ss_dssp HHHHH-TTCCCEEEC---CSHHHHHHHHHHHHHCSSEEEEEEEGGGST
T ss_pred HHHHH-cCCCcccCC---CCHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 34555 888877622 122456667777788889999999999886
No 36
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=27.56 E-value=1.3e+02 Score=24.73 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=38.2
Q ss_pred cccEEEecccccCccchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHH-hhcCceEEEE
Q 036133 11 NYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNA-IEGSKISVVI 73 (182)
Q Consensus 11 ~ydVFIS~~~~D~~~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~a-I~~S~~~Ivv 73 (182)
.++|+|---+++. ...+..|...|++ .|+++-+|.++ ..+...+..| ..+....|+|
T Consensus 298 p~~v~vi~~~~~~-~~~a~~l~~~Lr~-~Gi~v~~d~~~----~~~~~k~~~A~~~g~p~~iii 355 (401)
T 1evl_A 298 PVQVVIMNITDSQ-SEYVNELTQKLSN-AGIRVKADLRN----EKIGFKIREHTLRRVPYMLVC 355 (401)
T ss_dssp SSCEEEEESSGGG-HHHHHHHHHHHHH-TTCCEEEECCS----SCHHHHHHHHHHTTCSEEEEE
T ss_pred CeEEEEEecCHHH-HHHHHHHHHHHHH-CCCEEEEECCC----CCHHHHHHHHHhcCCCEEEEE
Confidence 4789876544433 4568889999999 99999999753 3455555555 3344544444
No 37
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=27.31 E-value=34 Score=23.53 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=16.0
Q ss_pred cChHHHHHHHHHHHhccccc
Q 036133 134 EKPEMVQKWRGALIETSHLA 153 (182)
Q Consensus 134 ~~~~~v~~W~~aL~~v~~~~ 153 (182)
++.+..++|-+||..++.++
T Consensus 101 ~s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 101 DSYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SSHHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 56889999999999998763
No 38
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=25.36 E-value=1.6e+02 Score=24.52 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=37.2
Q ss_pred cccEEEecccccCccchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHH-hhcCceEEEE
Q 036133 11 NYDVFLSFRGEDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNA-IEGSKISVVI 73 (182)
Q Consensus 11 ~ydVFIS~~~~D~~~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~a-I~~S~~~Ivv 73 (182)
.+||+|..-+++. ...+..|...|++ .|+++-+|.++ ..+...+..| ..+....|+|
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~-~Gi~v~~d~~~----~~~~~~~~~a~~~g~~~~iii 389 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRE-RGMNVTVEIME----RGLSAQLKYASAIGADFAVIF 389 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHT-TTCEEEECCSC----CCHHHHHHHHHHTTCSEEEEE
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHH-CCCeEEEecCC----CCHHHHHHHHHHCCCCEEEEE
Confidence 4789866545443 4567889999999 99999998753 3444455554 3345544444
No 39
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=24.44 E-value=19 Score=25.13 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=16.5
Q ss_pred EEecccccCccchHHHHHHHHhh
Q 036133 15 FLSFRGEDTRVSFTCHLYYNLNE 37 (182)
Q Consensus 15 FIS~~~~D~~~~fv~~L~~~L~~ 37 (182)
|+|||....+.-|+..|++.|++
T Consensus 28 ~vS~R~~~~GSwFIQ~Lc~vl~~ 50 (118)
T 2xzd_B 28 YYSWRNSKDGSWFIQSLCAMLKQ 50 (118)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHH
T ss_pred CEeeEeCCCCCccHHHHHHHHHH
Confidence 44555555556689999999987
No 40
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=23.88 E-value=48 Score=22.81 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=17.3
Q ss_pred cChHHHHHHHHHHHhccccc
Q 036133 134 EKPEMVQKWRGALIETSHLA 153 (182)
Q Consensus 134 ~~~~~v~~W~~aL~~v~~~~ 153 (182)
++++..+.|-+||..++.+.
T Consensus 103 ~s~~e~~~Wi~al~~a~~~~ 122 (126)
T 1v5p_A 103 NDQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp SSHHHHHHHHHHHHHTTTTS
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 56889999999999998764
No 41
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=23.57 E-value=18 Score=25.17 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=16.1
Q ss_pred EEecccccCccchHHHHHHHHhh
Q 036133 15 FLSFRGEDTRVSFTCHLYYNLNE 37 (182)
Q Consensus 15 FIS~~~~D~~~~fv~~L~~~L~~ 37 (182)
|+|||....+.-|+..|++.|++
T Consensus 28 yvS~R~~~~GSwFIQ~Lc~vl~~ 50 (117)
T 3rjm_B 28 TAAMRNTKRGSWYIEALAQVFSE 50 (117)
T ss_dssp CCCEEETTTEEHHHHHHHHHHHH
T ss_pred eECeeecCCCChHHHHHHHHHHH
Confidence 44455545556688999999987
No 42
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=22.74 E-value=1.8e+02 Score=19.57 Aligned_cols=43 Identities=9% Similarity=0.139 Sum_probs=31.9
Q ss_pred HHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccC
Q 036133 33 YNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYAS 80 (182)
Q Consensus 33 ~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~ 80 (182)
..+.- .|+.+|... ..+.+...+.+.+++.++.|++++++.+.
T Consensus 16 ~GFrL-aGi~~~~v~----~~ee~~~~~~~l~~~~digIIlIte~~a~ 58 (109)
T 2d00_A 16 QGFRL-AGLEGYGAS----SAEEAQSLLETLVERGGYALVAVDEALLP 58 (109)
T ss_dssp HHHHH-TTSEEEECS----SHHHHHHHHHHHHHHCCCSEEEEETTTCS
T ss_pred HHHHH-cCCeEEEeC----CHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 44556 899888542 23455666777788889999999999987
No 43
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=22.59 E-value=1e+02 Score=21.15 Aligned_cols=50 Identities=8% Similarity=0.070 Sum_probs=33.5
Q ss_pred HHHhhcCCcceEeeCccccCCCcchHHHHHHhhcCceEEEEeecCccCChhHHHHHHH
Q 036133 33 YNLNERTKIKTFIDDEEVRRGDEISPALLNAIEGSKISVVIFSKDYASSKWCLNELVK 90 (182)
Q Consensus 33 ~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~ 90 (182)
..++- .|+.+|... .-+.+...+.+.+++ ++.|++++++.+.. +.+++..
T Consensus 15 ~GFrL-aGie~~~v~----~~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~ 64 (115)
T 3aon_B 15 SPFRL-FGFDVQHGT----TKTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER 64 (115)
T ss_dssp GGGGG-GTCEEECCC----SHHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH
T ss_pred HHHHH-cCCeEEEeC----CHHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH
Confidence 34556 889887542 224555667777777 99999999998763 4444444
No 44
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=22.04 E-value=1.1e+02 Score=21.85 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=30.5
Q ss_pred cChHHHHHHHHHHHhccccccc-eeCCCCChHHHHHHHHHHHHHHhc
Q 036133 134 EKPEMVQKWRGALIETSHLAGH-ESTKFRHDAQLVSKIVEDVLKKME 179 (182)
Q Consensus 134 ~~~~~v~~W~~aL~~v~~~~G~-~~~~~~~e~~~i~~Iv~~v~~~l~ 179 (182)
++.+..+.|..||..|+.++.= ...--....-++.+....+..+..
T Consensus 96 ~s~ee~~eWi~aI~~v~~~~~p~~~~l~p~~~~~~~~~l~~~~~r~~ 142 (149)
T 1x1f_A 96 ENTESGEEWRGFILTVTELSVPQNVSLLPGQVIKLHEVLEREKKRRI 142 (149)
T ss_dssp SSHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcccCCCccccCccchHHHHHHHHHHHHHHh
Confidence 4678899999999999886542 111122345677777777766543
No 45
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=21.61 E-value=38 Score=28.86 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=36.2
Q ss_pred cccEEEeccc--ccCccchHHHHHHHHhhcCCcceEeeCccccCCCcchHHHHHH-hhcCceEEEE
Q 036133 11 NYDVFLSFRG--EDTRVSFTCHLYYNLNERTKIKTFIDDEEVRRGDEISPALLNA-IEGSKISVVI 73 (182)
Q Consensus 11 ~ydVFIS~~~--~D~~~~fv~~L~~~L~~~~gi~~f~d~~~~~~G~~i~~~i~~a-I~~S~~~Ivv 73 (182)
.++|+|---+ .+.....+..|+..|++ .|+.|-+|+++-.+|. .+..| ..+....|+|
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~-~Gi~v~~D~~~~~~g~----k~~~ad~~g~p~~iiv 425 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSA-KGVDVLYDDTDQRAGA----KFATADLIGIPWQIHV 425 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHH-TTCCEEEECSSCCHHH----HHHHHHHHTCSEEEEE
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhh-CCCEEEEECCCCCHHH----HHHHHHhcCCCEEEEE
Confidence 4788876332 12224567899999999 9999999986434444 44443 2344444443
No 46
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=21.49 E-value=2.6e+02 Score=20.97 Aligned_cols=104 Identities=11% Similarity=0.057 Sum_probs=49.0
Q ss_pred EEeecCccCChhHHHH--------HHHHHHhhhcC-CceEEeEEe-ecCCcccccccCchHhHHH--HHHhhhccChHHH
Q 036133 72 VIFSKDYASSKWCLNE--------LVKILECKHTN-GQIVIPVFY-SVSPSDVRHQTGSFGHGFD--QLKQQFKEKPEMV 139 (182)
Q Consensus 72 vv~S~~y~~S~wc~~E--------L~~i~~~~~~~-~~~viPIfy-~v~p~~vr~q~g~f~~~f~--~~~~~~~~~~~~v 139 (182)
+|++..|..|.....- +..+.+ .... -.+=+-||+ +++|.......+.-++.|+ +..++. .+..
T Consensus 89 ~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~-~~~~~~~PDlti~L~dv~pe~~~~R~~~~~dr~E~~~f~~rv---r~~Y 164 (216)
T 3tmk_A 89 NIVMDRYVYSGVAYSAAKGTNGMDLDWCLQ-PDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKV---KQTF 164 (216)
T ss_dssp EEEEESCHHHHHHHHHTTCCTTCCHHHHHG-GGTTSBCCSEEEEEECSCCSCGGGCCSSSCCTTCCHHHHHHH---HHHH
T ss_pred EEEEeccHhHHHHHHHhcCCCHHHHHHHHH-HhhCCCCCCEEEEEeCCCHHHHHHHhccCcccccHHHHHHHH---HHHH
Confidence 6777888888776432 222211 1111 123466888 9999876543321111121 111111 1222
Q ss_pred HHHHHHHHhccccccce-eC-CCCChHHHHHHHHHHHHHHhcc
Q 036133 140 QKWRGALIETSHLAGHE-ST-KFRHDAQLVSKIVEDVLKKMEK 180 (182)
Q Consensus 140 ~~W~~aL~~v~~~~G~~-~~-~~~~e~~~i~~Iv~~v~~~l~~ 180 (182)
.+|-..+.. ..-..|. ++ ...+-.+..++|.+.|.+.|.+
T Consensus 165 ~~la~~~~~-~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l~~ 206 (216)
T 3tmk_A 165 MKLLDKEIR-KGDESITIVDVTNKGIQEVEALIWQIVEPVLST 206 (216)
T ss_dssp HHHHHHHHH-TTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhccc-cCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 333222111 0112344 34 3456677777777777776654
No 47
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=20.81 E-value=2.2e+02 Score=19.79 Aligned_cols=19 Identities=5% Similarity=0.029 Sum_probs=14.6
Q ss_pred HHHHhhcCceEEEEeecCc
Q 036133 60 LLNAIEGSKISVVIFSKDY 78 (182)
Q Consensus 60 i~~aI~~S~~~Ivv~S~~y 78 (182)
....+..++..|+|++..-
T Consensus 88 ~~~~~~~~d~ii~v~d~~~ 106 (189)
T 2gf9_A 88 TTAYYRGAMGFLLMYDIAN 106 (189)
T ss_dssp GGGGGTTCSEEEEEEETTC
T ss_pred HHHhccCCCEEEEEEECCC
Confidence 3456789999999998643
No 48
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.17 E-value=53 Score=21.60 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=16.0
Q ss_pred cChHHHHHHHHHHHhcccc
Q 036133 134 EKPEMVQKWRGALIETSHL 152 (182)
Q Consensus 134 ~~~~~v~~W~~aL~~v~~~ 152 (182)
++++..+.|..||..++.+
T Consensus 103 ~s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 103 ESPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SSHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 4678899999999988764
Done!