BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036136
         (100 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PQS|A Chain A, The Crystal Structures Of Porcine Pathogen Aph87_tbpb
          Length = 521

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 15  LRQAKLIVSQGVSTSKVVPKGHFAVYVGE 43
           LR    +  +GV  SK +PKG+  VY GE
Sbjct: 116 LRDKGYVYYKGVHPSKELPKGNIIVYQGE 144


>pdb|1MG7|A Chain A, Crystal Structure Of Xol-1
 pdb|1MG7|B Chain B, Crystal Structure Of Xol-1
          Length = 417

 Score = 26.9 bits (58), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/48 (25%), Positives = 28/48 (58%)

Query: 45  QKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIPCREDIFIN 92
           Q+    + V F +Q + ++L+++ E+  GF+   GG+ +  ++D F +
Sbjct: 267 QEDYTCLEVEFDSQVALEKLMNEHEQVEGFEVQQGGILVALKKDSFFD 314


>pdb|1RU3|A Chain A, Crystal Structure Of The Monomeric Acetyl-Coa Synthase
          From Carboxydothermus Hydrogenoformans
          Length = 732

 Score = 26.2 bits (56), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/16 (62%), Positives = 14/16 (87%)

Query: 64 LLSKAEEEFGFDHPMG 79
          LLS+A E++G DHP+G
Sbjct: 42 LLSRAIEKYGPDHPVG 57


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,727,300
Number of Sequences: 62578
Number of extensions: 98665
Number of successful extensions: 254
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 4
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)