Query 036136
Match_columns 100
No_of_seqs 123 out of 645
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 09:47:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03090 auxin-responsive fami 100.0 1.3E-41 2.8E-46 235.5 10.4 96 1-98 1-104 (104)
2 PLN03220 uncharacterized prote 100.0 2.4E-40 5.1E-45 229.4 10.4 96 1-96 1-102 (105)
3 PF02519 Auxin_inducible: Auxi 100.0 2.4E-37 5.2E-42 212.0 8.9 96 1-98 1-100 (100)
4 PLN03219 uncharacterized prote 100.0 1.4E-35 3.1E-40 206.4 10.0 71 27-97 34-105 (108)
5 PF02214 BTB_2: BTB/POZ domain 84.6 1.1 2.3E-05 28.9 2.7 57 39-99 3-62 (94)
6 PRK02899 adaptor protein; Prov 83.5 0.96 2.1E-05 34.1 2.4 24 59-83 39-62 (197)
7 smart00666 PB1 PB1 domain. Pho 83.0 5.5 0.00012 24.7 5.4 51 42-98 9-69 (81)
8 PF02100 ODC_AZ: Ornithine dec 78.2 3.2 6.9E-05 28.6 3.4 51 45-97 23-77 (108)
9 PRK02315 adaptor protein; Prov 76.9 1.9 4.2E-05 33.1 2.2 24 59-83 39-62 (233)
10 PF05389 MecA: Negative regula 71.5 1.3 2.8E-05 33.3 0.0 25 58-83 38-62 (220)
11 cd05992 PB1 The PB1 domain is 52.3 52 0.0011 20.0 6.8 54 40-98 6-69 (81)
12 PF00564 PB1: PB1 domain; Int 50.1 58 0.0013 20.0 5.4 48 45-97 11-69 (84)
13 PF02209 VHP: Villin headpiece 50.1 8.8 0.00019 21.9 0.9 19 55-73 1-19 (36)
14 smart00153 VHP Villin headpiec 49.2 11 0.00023 21.4 1.2 19 55-73 1-19 (36)
15 PRK14186 bifunctional 5,10-met 47.0 89 0.0019 25.2 6.5 54 33-99 32-87 (297)
16 PRK10308 3-methyl-adenine DNA 46.5 86 0.0019 24.7 6.3 63 34-97 45-121 (283)
17 PF11834 DUF3354: Domain of un 43.9 19 0.0004 23.2 1.8 24 46-75 19-42 (69)
18 PRK14188 bifunctional 5,10-met 43.6 1.2E+02 0.0026 24.3 6.8 54 33-99 32-87 (296)
19 PF08861 DUF1828: Domain of un 43.6 76 0.0016 20.5 4.8 40 58-97 44-83 (90)
20 PRK14172 bifunctional 5,10-met 42.6 1.4E+02 0.0031 23.8 7.0 52 35-99 34-87 (278)
21 PF12058 DUF3539: Protein of u 40.8 4.5 9.7E-05 27.6 -1.5 11 54-64 4-14 (88)
22 PRK14179 bifunctional 5,10-met 39.8 1.7E+02 0.0038 23.4 7.1 53 34-99 33-87 (284)
23 PRK14193 bifunctional 5,10-met 38.1 1.8E+02 0.004 23.3 7.0 54 33-99 32-87 (284)
24 cd06410 PB1_UP2 Uncharacterize 37.2 79 0.0017 21.3 4.2 53 38-96 17-81 (97)
25 cd06407 PB1_NLP A PB1 domain i 37.1 1.2E+02 0.0026 19.7 5.3 46 41-91 7-63 (82)
26 PF11876 DUF3396: Protein of u 36.5 29 0.00063 26.3 2.2 40 46-85 24-65 (208)
27 PRK14176 bifunctional 5,10-met 32.9 2.4E+02 0.0052 22.6 6.9 54 33-99 38-93 (287)
28 COG1759 5-formaminoimidazole-4 32.3 20 0.00044 29.9 0.7 26 28-53 86-112 (361)
29 PRK14170 bifunctional 5,10-met 32.1 2.7E+02 0.0058 22.4 7.2 54 33-99 31-86 (284)
30 cd06398 PB1_Joka2 The PB1 doma 31.8 1.6E+02 0.0034 19.6 6.1 53 42-95 8-72 (91)
31 PRK14177 bifunctional 5,10-met 31.4 2.5E+02 0.0053 22.6 6.7 52 35-99 35-88 (284)
32 PLN02897 tetrahydrofolate dehy 31.0 2.5E+02 0.0054 23.3 6.9 53 34-99 87-141 (345)
33 PRK14184 bifunctional 5,10-met 30.8 2.7E+02 0.0059 22.3 6.9 54 33-99 31-86 (286)
34 PRK14189 bifunctional 5,10-met 30.8 2.7E+02 0.0059 22.3 6.9 54 33-99 32-87 (285)
35 PF07429 Glyco_transf_56: 4-al 30.1 1.3E+02 0.0029 25.2 5.1 45 31-75 180-245 (360)
36 PRK14171 bifunctional 5,10-met 29.0 2.8E+02 0.0062 22.3 6.7 52 35-99 34-87 (288)
37 cd06396 PB1_NBR1 The PB1 domai 29.0 1.8E+02 0.0038 19.3 5.5 48 45-95 10-65 (81)
38 cd06536 CIDE_N_ICAD CIDE_N dom 28.9 89 0.0019 20.8 3.3 36 45-85 12-47 (80)
39 PF08948 DUF1859: Domain of un 28.2 20 0.00044 25.5 0.1 28 33-62 86-123 (126)
40 PRK02797 4-alpha-L-fucosyltran 27.6 2.3E+02 0.005 23.4 6.1 45 31-75 141-206 (322)
41 TIGR02529 EutJ ethanolamine ut 27.4 65 0.0014 24.4 2.7 41 47-88 33-73 (239)
42 PRK14187 bifunctional 5,10-met 27.3 3.2E+02 0.0068 22.1 6.7 54 33-99 32-87 (294)
43 PRK10792 bifunctional 5,10-met 27.2 3.3E+02 0.0071 21.8 7.1 53 34-99 34-88 (285)
44 PRK14190 bifunctional 5,10-met 26.6 3.4E+02 0.0073 21.7 6.8 54 33-99 32-87 (284)
45 PF11822 DUF3342: Domain of un 26.3 93 0.002 25.6 3.6 51 45-99 12-67 (317)
46 PRK13277 5-formaminoimidazole- 25.7 21 0.00044 29.8 -0.3 25 28-52 86-111 (366)
47 PF05194 UreE_C: UreE urease a 25.3 1E+02 0.0022 19.9 3.0 27 35-68 25-51 (87)
48 cd01406 SIR2-like Sir2-like: P 25.1 85 0.0018 23.3 3.0 36 35-77 1-36 (242)
49 PRK14194 bifunctional 5,10-met 25.0 3.7E+02 0.0081 21.7 7.0 54 33-99 33-88 (301)
50 PRK14192 bifunctional 5,10-met 25.0 3.5E+02 0.0075 21.3 7.1 54 33-99 33-88 (283)
51 PF06344 Parecho_VpG: Parechov 23.7 34 0.00075 17.2 0.4 12 28-39 7-18 (20)
52 cd04395 RhoGAP_ARHGAP21 RhoGAP 23.5 1.8E+02 0.0038 21.2 4.4 40 59-99 19-58 (196)
53 PF12062 HSNSD: heparan sulfat 23.2 70 0.0015 27.8 2.4 44 30-74 91-141 (487)
54 PRK14166 bifunctional 5,10-met 22.5 4.1E+02 0.0089 21.3 7.1 54 33-99 30-85 (282)
55 COG4862 MecA Negative regulato 22.4 58 0.0013 25.6 1.7 26 58-84 38-63 (224)
56 TIGR03793 TOMM_pelo TOMM prope 22.1 1.5E+02 0.0033 19.2 3.4 26 57-83 15-44 (77)
57 PF14317 YcxB: YcxB-like prote 21.7 1.6E+02 0.0035 16.4 3.4 31 33-65 28-58 (62)
58 cd04751 Commd3 COMM_Domain con 21.3 97 0.0021 20.5 2.4 20 79-98 65-84 (95)
59 PF00763 THF_DHG_CYH: Tetrahyd 21.2 2.7E+02 0.0059 18.8 5.8 56 31-99 27-84 (117)
60 PF12518 DUF3721: Protein of u 21.1 65 0.0014 18.2 1.3 22 66-87 8-31 (34)
61 PF04304 DUF454: Protein of un 21.0 63 0.0014 19.8 1.3 21 55-75 5-25 (71)
62 cd01615 CIDE_N CIDE_N domain, 20.5 1.4E+02 0.0031 19.6 3.0 34 45-85 12-45 (78)
63 PF11731 Cdd1: Pathogenicity l 20.3 1.5E+02 0.0034 20.1 3.2 31 62-98 45-75 (93)
No 1
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=235.47 Aligned_cols=96 Identities=49% Similarity=0.834 Sum_probs=87.5
Q ss_pred Cccccch----hHHHHHHHHHhhhhhhcCc----cccccCCCceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhc
Q 036136 1 MAIHVPG----IMHAKQILRQAKLIVSQGV----STSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEF 72 (100)
Q Consensus 1 m~~~~~~----~~~~k~~l~r~~~~~~~~~----~~~~~vpkG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEf 72 (100)
|||+..+ ++++||+|+||+|..++++ ..+.+||+||||||||+ +++||+||++|||||.|++||++|||||
T Consensus 1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~-~~~RfvVp~~~L~hP~F~~LL~~aeeEf 79 (104)
T PLN03090 1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQAEEEF 79 (104)
T ss_pred CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECC-CCEEEEEEHHHcCCHHHHHHHHHHHHHh
Confidence 7887554 5689999999999988643 36789999999999998 8999999999999999999999999999
Q ss_pred CCcCCCCceeeeCcHHHHHHHHHhhc
Q 036136 73 GFDHPMGGLTIPCREDIFINVTSSLN 98 (100)
Q Consensus 73 G~~~~~G~L~IPC~~~~Fe~vl~~l~ 98 (100)
||+|+ |+|+|||+++.|++++|+|+
T Consensus 80 Gf~~~-G~L~IPC~~~~Fe~ll~~i~ 104 (104)
T PLN03090 80 GFDHD-MGLTIPCEEVVFRSLTSMIR 104 (104)
T ss_pred CCCCC-CcEEEeCCHHHHHHHHHHhC
Confidence 99998 89999999999999999983
No 2
>PLN03220 uncharacterized protein; Provisional
Probab=100.00 E-value=2.4e-40 Score=229.37 Aligned_cols=96 Identities=59% Similarity=1.022 Sum_probs=84.8
Q ss_pred CccccchhH-HHHHHHHHhhhhhhc--CccccccCCCceEEEEeeCC---CceEEEEeecCCCCHHHHHHHHhhHHhcCC
Q 036136 1 MAIHVPGIM-HAKQILRQAKLIVSQ--GVSTSKVVPKGHFAVYVGEN---QKKRFVIPVSFLNQPSFQELLSKAEEEFGF 74 (100)
Q Consensus 1 m~~~~~~~~-~~k~~l~r~~~~~~~--~~~~~~~vpkG~~aVyVG~~---e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~ 74 (100)
||+++++|+ +.||+|+||+...+. .++.+.+|||||||||||++ +++|||||++|||||.|++||++|||||||
T Consensus 1 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf 80 (105)
T PLN03220 1 MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF 80 (105)
T ss_pred CCcchhhhHHHHHHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence 999999999 559999999943332 23577899999999999973 589999999999999999999999999999
Q ss_pred cCCCCceeeeCcHHHHHHHHHh
Q 036136 75 DHPMGGLTIPCREDIFINVTSS 96 (100)
Q Consensus 75 ~~~~G~L~IPC~~~~Fe~vl~~ 96 (100)
+|++|+|+|||+++.|+++++.
T Consensus 81 ~~~~G~L~IPCd~~~F~~ll~s 102 (105)
T PLN03220 81 NHPMGGLTIPCREEVFLDLIAS 102 (105)
T ss_pred CCCCCCEEeeCCHHHHHHHHHh
Confidence 9966999999999999999863
No 3
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=2.4e-37 Score=211.95 Aligned_cols=96 Identities=51% Similarity=0.818 Sum_probs=80.5
Q ss_pred CccccchhHHHHHHHHHhhhhhhcC----ccccccCCCceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcC
Q 036136 1 MAIHVPGIMHAKQILRQAKLIVSQG----VSTSKVVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDH 76 (100)
Q Consensus 1 m~~~~~~~~~~k~~l~r~~~~~~~~----~~~~~~vpkG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~ 76 (100)
|.-++..+..+++...+++....+. ++...++|+||||||||+ +++||+||++|||||+|++||++|||||||++
T Consensus 1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~-~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~ 79 (100)
T PF02519_consen 1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGE-ERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQ 79 (100)
T ss_pred CccHHHHHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCc-cceEEEechHHcCchhHHHHHHHHhhhcCcCC
Confidence 5666666666666655555433322 223489999999999999 99999999999999999999999999999999
Q ss_pred CCCceeeeCcHHHHHHHHHhhc
Q 036136 77 PMGGLTIPCREDIFINVTSSLN 98 (100)
Q Consensus 77 ~~G~L~IPC~~~~Fe~vl~~l~ 98 (100)
+ |+|+|||+++.|++++|+|+
T Consensus 80 ~-G~l~iPC~~~~Fe~~l~~le 100 (100)
T PF02519_consen 80 D-GPLTIPCDVVLFEHLLWLLE 100 (100)
T ss_pred C-CcEEeeCCHHHHHHHHHHhC
Confidence 6 99999999999999999985
No 4
>PLN03219 uncharacterized protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=206.38 Aligned_cols=71 Identities=63% Similarity=1.137 Sum_probs=65.9
Q ss_pred cccccCCCceEEEEeeC-CCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeeeCcHHHHHHHHHhh
Q 036136 27 STSKVVPKGHFAVYVGE-NQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSL 97 (100)
Q Consensus 27 ~~~~~vpkG~~aVyVG~-~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l 97 (100)
+.+.+|||||||||||+ +|++||+||++|||||+|++||++|||||||+|++|+|+|||+++.|+++++.-
T Consensus 34 ~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~ 105 (108)
T PLN03219 34 TTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSH 105 (108)
T ss_pred CCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhh
Confidence 46678999999999998 379999999999999999999999999999998669999999999999999864
No 5
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=84.57 E-value=1.1 Score=28.86 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=41.3
Q ss_pred EEeeCCCceEEEEeecCCC-CH--HHHHHHHhhHHhcCCcCCCCceeeeCcHHHHHHHHHhhcc
Q 036136 39 VYVGENQKKRFVIPVSFLN-QP--SFQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLNE 99 (100)
Q Consensus 39 VyVG~~e~~RfvVp~~~L~-hp--~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (100)
+=||. ++|.++.+-|. +| .|..++........ ..+.|.+-|-++...|++|+..++.
T Consensus 3 lNVGG---~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~-~~~~~~~fiDRdp~~F~~IL~ylr~ 62 (94)
T PF02214_consen 3 LNVGG---TIFETSRSTLTRYPDSLLARLFSGERSDDY-DDDDGEYFIDRDPELFEYILNYLRT 62 (94)
T ss_dssp EEETT---EEEEEEHHHHHTSTTSTTTSHHHTGHGGGE-ETTTTEEEESS-HHHHHHHHHHHHH
T ss_pred EEECC---EEEEEcHHHHhhCCCChhhhHHhhcccccc-CCccceEEeccChhhhhHHHHHHhh
Confidence 44775 99999998887 54 68888886522222 2234899999999999999998764
No 6
>PRK02899 adaptor protein; Provisional
Probab=83.51 E-value=0.96 Score=34.11 Aligned_cols=24 Identities=25% Similarity=0.726 Sum_probs=20.7
Q ss_pred HHHHHHHHhhHHhcCCcCCCCceee
Q 036136 59 PSFQELLSKAEEEFGFDHPMGGLTI 83 (100)
Q Consensus 59 p~F~~LL~~aeEEfG~~~~~G~L~I 83 (100)
-+|.++|++|..|+||.-+ |||+|
T Consensus 39 ~lF~~mm~Ea~~e~~F~~~-~pl~~ 62 (197)
T PRK02899 39 QLFRDMMQEANKELGFEAD-GPIAV 62 (197)
T ss_pred HHHHHHHHHhhhccCcccC-CeEEE
Confidence 3588889999999999976 99986
No 7
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=83.00 E-value=5.5 Score=24.74 Aligned_cols=51 Identities=22% Similarity=0.425 Sum_probs=37.5
Q ss_pred eCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCc----------CCCCceeeeCcHHHHHHHHHhhc
Q 036136 42 GENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFD----------HPMGGLTIPCREDIFINVTSSLN 98 (100)
Q Consensus 42 G~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~----------~~~G~L~IPC~~~~Fe~vl~~l~ 98 (100)
|+ +.+||.+|- ...|.+|..+..+.|+.. .++..++|.++ +++..++++..
T Consensus 9 ~~-~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd-~Dl~~a~~~~~ 69 (81)
T smart00666 9 GG-ETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSD-EDLEEAIEEYD 69 (81)
T ss_pred CC-EEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCH-HHHHHHHHHHH
Confidence 55 789999985 778999999999998874 23347888886 45666665543
No 8
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=78.20 E-value=3.2 Score=28.58 Aligned_cols=51 Identities=31% Similarity=0.378 Sum_probs=26.8
Q ss_pred CceEEE-EeecCCCC---HHHHHHHHhhHHhcCCcCCCCceeeeCcHHHHHHHHHhh
Q 036136 45 QKKRFV-IPVSFLNQ---PSFQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSL 97 (100)
Q Consensus 45 e~~Rfv-Vp~~~L~h---p~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l 97 (100)
++.=|| +|-..+.+ ..|.+||+.|||.++.++ -.+.++=+-.....++..+
T Consensus 23 ~~~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~--vvic~~k~~~d~~~Llr~l 77 (108)
T PF02100_consen 23 ERTLFVFIPSSALGQGSKESLVALLELAEEKLGCSH--VVICLDKNRPDRASLLRTL 77 (108)
T ss_dssp TTEEEEE-SS---SS--SHHHHHHHHHHHHHH------EEEEE---SS-HHHHHHHH
T ss_pred CCEEEEEECCcccccccHHHHHHHHHHhcCcCCCCE--EEEEEECCchhHHHhhhhc
Confidence 455566 46544444 459999999999999886 4677775555555555443
No 9
>PRK02315 adaptor protein; Provisional
Probab=76.92 E-value=1.9 Score=33.12 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.5
Q ss_pred HHHHHHHHhhHHhcCCcCCCCceee
Q 036136 59 PSFQELLSKAEEEFGFDHPMGGLTI 83 (100)
Q Consensus 59 p~F~~LL~~aeEEfG~~~~~G~L~I 83 (100)
-+|.++|++|..|+||..+ |||+|
T Consensus 39 ~fF~~mm~Ea~~e~~F~~~-~pl~~ 62 (233)
T PRK02315 39 EFFYSMMDEVDEEDDFADE-GPLWF 62 (233)
T ss_pred HHHHHHHHHhccccCcccC-CeEEE
Confidence 4699999999999999975 99986
No 10
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=71.48 E-value=1.3 Score=33.28 Aligned_cols=25 Identities=40% Similarity=0.715 Sum_probs=0.0
Q ss_pred CHHHHHHHHhhHHhcCCcCCCCceee
Q 036136 58 QPSFQELLSKAEEEFGFDHPMGGLTI 83 (100)
Q Consensus 58 hp~F~~LL~~aeEEfG~~~~~G~L~I 83 (100)
+-.|.++|++|.+|+||..+ |+|++
T Consensus 38 e~fF~~ileea~~e~~F~~~-~~l~~ 62 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFEND-GPLTF 62 (220)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHhccccCcccC-CeEEE
Confidence 35699999999999999985 88875
No 11
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=52.32 E-value=52 Score=20.03 Aligned_cols=54 Identities=28% Similarity=0.383 Sum_probs=37.9
Q ss_pred EeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCc----------CCCCceeeeCcHHHHHHHHHhhc
Q 036136 40 YVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFD----------HPMGGLTIPCREDIFINVTSSLN 98 (100)
Q Consensus 40 yVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~----------~~~G~L~IPC~~~~Fe~vl~~l~ 98 (100)
+-++ +.+||.+|- .++.|.+|..+-.+.|+.. .++-.++|.++ ++|+..++...
T Consensus 6 ~~~~-~~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~~~~~ 69 (81)
T cd05992 6 KYGG-EIRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAIEEAR 69 (81)
T ss_pred EecC-CCEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHHHHHh
Confidence 3343 689999997 7888999999998888874 12234566665 56777666543
No 12
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=50.15 E-value=58 Score=19.95 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=31.8
Q ss_pred CceE-EEEeecCCCCHHHHHHHHhhHHhcCCc----------CCCCceeeeCcHHHHHHHHHhh
Q 036136 45 QKKR-FVIPVSFLNQPSFQELLSKAEEEFGFD----------HPMGGLTIPCREDIFINVTSSL 97 (100)
Q Consensus 45 e~~R-fvVp~~~L~hp~F~~LL~~aeEEfG~~----------~~~G~L~IPC~~~~Fe~vl~~l 97 (100)
+.+| +.+| ..+.|.+|..+.++.||.. .++-.++|.++ ++++..+...
T Consensus 11 ~~~~~~~~~----~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd-~Dl~~a~~~~ 69 (84)
T PF00564_consen 11 DIRRIISLP----SDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSD-EDLQEAIEQA 69 (84)
T ss_dssp EEEEEEEEC----STSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSH-HHHHHHHHHH
T ss_pred eeEEEEEcC----CCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCH-HHHHHHHHHH
Confidence 4555 4444 5679999999999999983 23235777776 4555555544
No 13
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=50.10 E-value=8.8 Score=21.88 Aligned_cols=19 Identities=26% Similarity=0.620 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHhhHHhcC
Q 036136 55 FLNQPSFQELLSKAEEEFG 73 (100)
Q Consensus 55 ~L~hp~F~~LL~~aeEEfG 73 (100)
||+.-.|++++.++.+||.
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 7889999999999999984
No 14
>smart00153 VHP Villin headpiece domain.
Probab=49.21 E-value=11 Score=21.43 Aligned_cols=19 Identities=32% Similarity=0.653 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHhhHHhcC
Q 036136 55 FLNQPSFQELLSKAEEEFG 73 (100)
Q Consensus 55 ~L~hp~F~~LL~~aeEEfG 73 (100)
||+.-.|+..+.++.+||-
T Consensus 1 yLsdeeF~~vfgmsr~eF~ 19 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFY 19 (36)
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 7889999999999999983
No 15
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.99 E-value=89 Score=25.20 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=39.8
Q ss_pred CCceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeee--CcHHHHHHHHHhhcc
Q 036136 33 PKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIP--CREDIFINVTSSLNE 99 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+.+...|.||+ +. ..-....--.++.|++|++.+ .+.+| ++.++|...+..||.
T Consensus 32 ~p~LaiI~vgd-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 87 (297)
T PRK14186 32 PPGLAVLRVGD-DP----------ASAVYVRNKEKACARVGIASF--GKHLPADTSQAEVEALIAQLNQ 87 (297)
T ss_pred CceEEEEEeCC-Ch----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34788899997 21 123456667788999999875 56676 888999999988864
No 16
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=46.51 E-value=86 Score=24.71 Aligned_cols=63 Identities=22% Similarity=0.268 Sum_probs=42.2
Q ss_pred CceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCC--------------CCceeeeCcHHHHHHHHHhh
Q 036136 34 KGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHP--------------MGGLTIPCREDIFINVTSSL 97 (100)
Q Consensus 34 kG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~--------------~G~L~IPC~~~~Fe~vl~~l 97 (100)
.|+|.|.-.+ ...++.|.++.-.-+....++.....-|+.+.+ .-+|+||...+.||.+++.|
T Consensus 45 ~~~~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~vrr~fdLd~d~~~i~~~L~~~~~~~~GlR~p~~~d~fE~lv~aI 121 (283)
T PRK10308 45 RGVVTVIPDI-ARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAARPGLRLPGSVDAFEQGVRAI 121 (283)
T ss_pred cEEEEEEEcC-CCceEEEEEcCCccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHH
Confidence 4555555544 445666666654335555677777777776654 24699999999999988876
No 17
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=43.93 E-value=19 Score=23.17 Aligned_cols=24 Identities=46% Similarity=0.725 Sum_probs=19.6
Q ss_pred ceEEEEeecCCCCHHHHHHHHhhHHhcCCc
Q 036136 46 KKRFVIPVSFLNQPSFQELLSKAEEEFGFD 75 (100)
Q Consensus 46 ~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~ 75 (100)
.+=..+| -.+++||+.|++.||+.
T Consensus 19 GKvi~lP------~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 19 GKVIWLP------DSLEELLKIASEKFGFS 42 (69)
T ss_pred CEEEEcC------ccHHHHHHHHHHHhCCC
Confidence 4556666 47999999999999985
No 18
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.62 E-value=1.2e+02 Score=24.29 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=39.8
Q ss_pred CCceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeee--CcHHHHHHHHHhhcc
Q 036136 33 PKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIP--CREDIFINVTSSLNE 99 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+.+...|.||++ . ..-....--.++.|++|++.+ .+.+| ++.++|...+..||.
T Consensus 32 ~p~La~i~vg~~-~----------~s~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~i~~lN~ 87 (296)
T PRK14188 32 TPGLAVVLVGED-P----------ASQVYVRSKGKQTKEAGMASF--EHKLPADTSQAELLALIARLNA 87 (296)
T ss_pred CCeEEEEEeCCC-h----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 448888999972 1 112356667788999999864 56777 888999999988864
No 19
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=43.57 E-value=76 Score=20.49 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=34.0
Q ss_pred CHHHHHHHHhhHHhcCCcCCCCceeeeCcHHHHHHHHHhh
Q 036136 58 QPSFQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSL 97 (100)
Q Consensus 58 hp~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l 97 (100)
.+.=+++|+..-..||+.-++|.|.+.++.+.|-.....+
T Consensus 44 s~~R~~~l~~il~~~gv~~~~~el~~~~~~~~~~~~~~~l 83 (90)
T PF08861_consen 44 SKKRKKILNSILNGFGVELDEGELFIKTSEENFPQAKHRL 83 (90)
T ss_pred chHHHHHHHHHHHHcCccccCCEEEEEeCHHHHHHHHHHH
Confidence 5777899999999999998889999999999887766543
No 20
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.55 E-value=1.4e+02 Score=23.82 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=38.5
Q ss_pred ceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeee--CcHHHHHHHHHhhcc
Q 036136 35 GHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIP--CREDIFINVTSSLNE 99 (100)
Q Consensus 35 G~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+...|+||+ +. ........-.++.|+.|+..+ .+.+| |+.+++...+..||.
T Consensus 34 ~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 87 (278)
T PRK14172 34 KIASILVGN-DG----------GSIYYMNNQEKVANSLGIDFK--KIKLDESISEEDLINEIEELNK 87 (278)
T ss_pred eEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 777889997 21 112345566788999999865 67888 888999999988864
No 21
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=40.81 E-value=4.5 Score=27.58 Aligned_cols=11 Identities=45% Similarity=0.966 Sum_probs=8.1
Q ss_pred cCCCCHHHHHH
Q 036136 54 SFLNQPSFQEL 64 (100)
Q Consensus 54 ~~L~hp~F~~L 64 (100)
.|||||.|.-|
T Consensus 4 ~YLNHPtFGlL 14 (88)
T PF12058_consen 4 TYLNHPTFGLL 14 (88)
T ss_dssp -EEEETTTEEE
T ss_pred ccccCCccchh
Confidence 58999998654
No 22
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.79 E-value=1.7e+02 Score=23.36 Aligned_cols=53 Identities=13% Similarity=0.334 Sum_probs=39.8
Q ss_pred CceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeee--CcHHHHHHHHHhhcc
Q 036136 34 KGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIP--CREDIFINVTSSLNE 99 (100)
Q Consensus 34 kG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
.+...|.||+ +. ..-....--.++.|+.|+..+ .+.+| ++.++|...+..||.
T Consensus 33 P~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~ 87 (284)
T PRK14179 33 PGLVVILVGD-NP----------ASQVYVRNKERSALAAGFKSE--VVRLPETISQEELLDLIERYNQ 87 (284)
T ss_pred ceEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 3788899997 21 112455666788999999865 67888 889999999988865
No 23
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.12 E-value=1.8e+02 Score=23.26 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=40.5
Q ss_pred CCceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeee--CcHHHHHHHHHhhcc
Q 036136 33 PKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIP--CREDIFINVTSSLNE 99 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+.+...|+||+ +. ..-.....-.++.|+.|++.+ .+.+| ++.++|...+..||.
T Consensus 32 ~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~el~~~I~~lN~ 87 (284)
T PRK14193 32 TPGLGTVLVGD-DP----------GSQAYVRGKHRDCAEVGITSI--RRDLPADATQEELNAVIDELNA 87 (284)
T ss_pred CceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34788899997 21 123466777788999999865 57888 889999999988864
No 24
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=37.17 E-value=79 Score=21.32 Aligned_cols=53 Identities=28% Similarity=0.326 Sum_probs=36.2
Q ss_pred EEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCC------------CCceeeeCcHHHHHHHHHh
Q 036136 38 AVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHP------------MGGLTIPCREDIFINVTSS 96 (100)
Q Consensus 38 aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~------------~G~L~IPC~~~~Fe~vl~~ 96 (100)
.=|||. +.+--.|+-+ ..|.+|..+..+.++..+. ++-+.|.||. +..++++.
T Consensus 17 l~Y~GG-~tr~i~V~r~----~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~De-Dl~~M~~e 81 (97)
T cd06410 17 LRYVGG-ETRIVSVDRS----ISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDE-DLKNMMEE 81 (97)
T ss_pred EEEcCC-ceEEEEEcCC----CCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcH-HHHHHHHh
Confidence 479997 7888888865 4677888888888876651 2466778886 34444443
No 25
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=37.10 E-value=1.2e+02 Score=19.74 Aligned_cols=46 Identities=30% Similarity=0.461 Sum_probs=33.1
Q ss_pred eeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcC-----------CCCceeeeCcHHHHH
Q 036136 41 VGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDH-----------PMGGLTIPCREDIFI 91 (100)
Q Consensus 41 VG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~-----------~~G~L~IPC~~~~Fe 91 (100)
.|+ +..||.+|.+ .-|++|.++-.+-|+.+. ++...+|.|+.+.=+
T Consensus 7 ~~~-d~~r~~l~~~----~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~e 63 (82)
T cd06407 7 YGE-EKIRFRLPPS----WGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEE 63 (82)
T ss_pred eCC-eEEEEEcCCC----CCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHH
Confidence 355 7899998864 368999988888887653 235678888866544
No 26
>PF11876 DUF3396: Protein of unknown function (DUF3396); InterPro: IPR021815 This family of proteins are functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.
Probab=36.51 E-value=29 Score=26.27 Aligned_cols=40 Identities=25% Similarity=0.497 Sum_probs=31.3
Q ss_pred ceEEEEeecCCCC-H-HHHHHHHhhHHhcCCcCCCCceeeeC
Q 036136 46 KKRFVIPVSFLNQ-P-SFQELLSKAEEEFGFDHPMGGLTIPC 85 (100)
Q Consensus 46 ~~RfvVp~~~L~h-p-~F~~LL~~aeEEfG~~~~~G~L~IPC 85 (100)
-=+|.+|++||.. | .|++|+....+++.+.|-.+++.+-.
T Consensus 24 ~l~f~~P~~~l~~~~~~~~~l~~~~a~~L~~~~G~aGl~~~~ 65 (208)
T PF11876_consen 24 YLSFSLPLEWLEEGPGHFRALFLELAERLPPSHGYAGLAFNL 65 (208)
T ss_pred EEEEEeCHHHHhcCcHHHHHHHHHHHHHCCCCeEeeEEEEec
Confidence 4589999999987 2 49999999999987776555666543
No 27
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.91 E-value=2.4e+02 Score=22.65 Aligned_cols=54 Identities=22% Similarity=0.387 Sum_probs=40.5
Q ss_pred CCceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeee--CcHHHHHHHHHhhcc
Q 036136 33 PKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIP--CREDIFINVTSSLNE 99 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+.+...|.||++ . ..-....--.++.|+.|+..+ .+.+| ++.+.++..+..||.
T Consensus 38 ~P~Laii~vg~d-~----------aS~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~LN~ 93 (287)
T PRK14176 38 TPGLATILVGDD-P----------ASKMYVRLKHKACERVGIRAE--DQFLPADTTQEELLELIDSLNK 93 (287)
T ss_pred CCeEEEEEECCC-c----------chHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 348888999972 1 123466777888999999865 57777 788899999988864
No 28
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=32.33 E-value=20 Score=29.94 Aligned_cols=26 Identities=31% Similarity=0.765 Sum_probs=19.4
Q ss_pred ccccCCCceEEEEeeCC-CceEEEEee
Q 036136 28 TSKVVPKGHFAVYVGEN-QKKRFVIPV 53 (100)
Q Consensus 28 ~~~~vpkG~~aVyVG~~-e~~RfvVp~ 53 (100)
..--+|.|.|++|||-+ --+.|.||+
T Consensus 86 n~I~IP~gSfv~Y~G~d~ie~~~~vP~ 112 (361)
T COG1759 86 NAIFIPHGSFVAYVGYDGIENEFEVPM 112 (361)
T ss_pred CeEEecCCceEEEecchhhhhcccCcc
Confidence 45578999999999962 345677774
No 29
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.06 E-value=2.7e+02 Score=22.36 Aligned_cols=54 Identities=28% Similarity=0.433 Sum_probs=39.8
Q ss_pred CCceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeee--CcHHHHHHHHHhhcc
Q 036136 33 PKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIP--CREDIFINVTSSLNE 99 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+.+...|.||++ . ..-.....-.++.+++|+..+ .+.+| ++.++|+..+..||.
T Consensus 31 ~P~Laii~vg~d-~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 86 (284)
T PRK14170 31 KPGLAVVLVGDN-Q----------ASRTYVRNKQKRTEEAGMKSV--LIELPENVTEEKLLSVVEELNE 86 (284)
T ss_pred CCeEEEEEeCCC-H----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 447888999972 1 123456677788999999865 57777 778889998888864
No 30
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=31.75 E-value=1.6e+02 Score=19.58 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=35.9
Q ss_pred eCCCceEEEEeecC-CCCHHHHHHHHhhHHhcCCcC-----------CCCceeeeCcHHHHHHHHH
Q 036136 42 GENQKKRFVIPVSF-LNQPSFQELLSKAEEEFGFDH-----------PMGGLTIPCREDIFINVTS 95 (100)
Q Consensus 42 G~~e~~RfvVp~~~-L~hp~F~~LL~~aeEEfG~~~-----------~~G~L~IPC~~~~Fe~vl~ 95 (100)
|+ +.+||-+|..- -.+.-|..|.++-++-|.... ++.-++|.|+.+.-+.+-.
T Consensus 8 ~~-~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~ 72 (91)
T cd06398 8 GG-TLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQY 72 (91)
T ss_pred CC-EEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHH
Confidence 55 79999999741 113468888888888777653 2346888898766555443
No 31
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.38 E-value=2.5e+02 Score=22.57 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=38.6
Q ss_pred ceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeee--CcHHHHHHHHHhhcc
Q 036136 35 GHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIP--CREDIFINVTSSLNE 99 (100)
Q Consensus 35 G~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+...|.||++ . ..-....--.++.+++|+..+ .+.+| |+.+.|...+..||.
T Consensus 35 ~Laii~vg~d-~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~s~~el~~~I~~lN~ 88 (284)
T PRK14177 35 KLATILVGNN-P----------ASETYVSMKVKACHKVGMGSE--MIRLKEQTTTEELLGVIDKLNL 88 (284)
T ss_pred eEEEEEeCCC-h----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 7778889972 1 012345566778999999875 57777 889999999988874
No 32
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=31.05 E-value=2.5e+02 Score=23.32 Aligned_cols=53 Identities=26% Similarity=0.410 Sum_probs=39.0
Q ss_pred CceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeee--CcHHHHHHHHHhhcc
Q 036136 34 KGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIP--CREDIFINVTSSLNE 99 (100)
Q Consensus 34 kG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
.+...|.||++ . ..-....--.++.|++|+..+ .+.+| ++.++++..+..+|.
T Consensus 87 P~LaiIlvGdd-p----------aS~~Yv~~k~K~a~~~GI~~~--~~~l~~~~te~ell~~I~~lN~ 141 (345)
T PLN02897 87 PGLAVVLVGQQ-R----------DSQTYVRNKIKACEETGIKSL--LAELPEDCTEGQILSALRKFNE 141 (345)
T ss_pred CeEEEEEeCCC-h----------HHHHHHHHHHHHHHhcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 37888999972 1 012455666788999999875 57777 788899999988864
No 33
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.82 E-value=2.7e+02 Score=22.30 Aligned_cols=54 Identities=19% Similarity=0.326 Sum_probs=39.9
Q ss_pred CCceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeee--CcHHHHHHHHHhhcc
Q 036136 33 PKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIP--CREDIFINVTSSLNE 99 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+.+...|.||+ +. ..-....--.++.++.|+..+ .+.+| ++.++|...+..+|.
T Consensus 31 ~P~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~ 86 (286)
T PRK14184 31 APGLAVILVGE-DP----------ASQVYVRNKERACEDAGIVSE--AFRLPADTTQEELEDLIAELNA 86 (286)
T ss_pred CCEEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34788899997 21 112355566778999999875 57788 889999999998875
No 34
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.76 E-value=2.7e+02 Score=22.26 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=41.1
Q ss_pred CCceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeee--CcHHHHHHHHHhhcc
Q 036136 33 PKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIP--CREDIFINVTSSLNE 99 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+.+...|.||+ +. ..-....--.++.+|.|+..+ .+.+| ++.+.|+..+..||.
T Consensus 32 ~p~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 32 QPGLAVILVGD-NP----------ASQVYVRNKVKACEDNGFHSL--KDRYPADLSEAELLARIDELNR 87 (285)
T ss_pred CCeEEEEEeCC-Cc----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHcC
Confidence 34888899997 21 223456677788999999875 67888 889999999998875
No 35
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=30.08 E-value=1.3e+02 Score=25.20 Aligned_cols=45 Identities=27% Similarity=0.565 Sum_probs=34.8
Q ss_pred cCCCceEEEEeeC-------------------CCceEEEEeecCC--CCHHHHHHHHhhHHhcCCc
Q 036136 31 VVPKGHFAVYVGE-------------------NQKKRFVIPVSFL--NQPSFQELLSKAEEEFGFD 75 (100)
Q Consensus 31 ~vpkG~~aVyVG~-------------------~e~~RfvVp~~~L--~hp~F~~LL~~aeEEfG~~ 75 (100)
..++|-+.|.||. ++..|++||++|= |..-..++.+.+++-||-+
T Consensus 180 ~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~ 245 (360)
T PF07429_consen 180 KKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAE 245 (360)
T ss_pred cCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCcc
Confidence 3457899999984 2468999999996 4567778888888888854
No 36
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.01 E-value=2.8e+02 Score=22.26 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=38.3
Q ss_pred ceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeee--CcHHHHHHHHHhhcc
Q 036136 35 GHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIP--CREDIFINVTSSLNE 99 (100)
Q Consensus 35 G~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+...|.||+ +. ..-....--.++.++.|++.+ .+.+| ++.+.+...+..||.
T Consensus 34 ~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~~l~~~I~~LN~ 87 (288)
T PRK14171 34 KLAIVLVGD-NP----------ASIIYVKNKIKNAHKIGIDTL--LVNLSTTIHTNDLISKINELNL 87 (288)
T ss_pred eEEEEEeCC-Cc----------cHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHcC
Confidence 688899997 21 123355566778899999865 67887 888889998888864
No 37
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=29.01 E-value=1.8e+02 Score=19.29 Aligned_cols=48 Identities=6% Similarity=0.243 Sum_probs=34.2
Q ss_pred CceEEEEeecCCCCHHHHHHHHhhHHhcCCc--------CCCCceeeeCcHHHHHHHHH
Q 036136 45 QKKRFVIPVSFLNQPSFQELLSKAEEEFGFD--------HPMGGLTIPCREDIFINVTS 95 (100)
Q Consensus 45 e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~--------~~~G~L~IPC~~~~Fe~vl~ 95 (100)
+..||.++- -.++.|.+|..+-+.-|+++ .++-+++|.|+++. +..+.
T Consensus 10 d~~rf~~~~--~~~~~~~~L~~ev~~rf~l~~f~lKYlDde~e~v~lssd~eL-eE~~r 65 (81)
T cd06396 10 ESQSFLVSD--SENTTWASVEAMVKVSFGLNDIQIKYVDEENEEVSVNSQGEY-EEALK 65 (81)
T ss_pred eEEEEEecC--CCCCCHHHHHHHHHHHhCCCcceeEEEcCCCCEEEEEchhhH-HHHHH
Confidence 689999883 11457999999999999853 34568899998654 44443
No 38
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=28.93 E-value=89 Score=20.77 Aligned_cols=36 Identities=33% Similarity=0.452 Sum_probs=24.7
Q ss_pred CceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeeeC
Q 036136 45 QKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIPC 85 (100)
Q Consensus 45 e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IPC 85 (100)
..+||=|=++ .+++|+.++.+-|....++++++|=+
T Consensus 12 r~~k~GV~A~-----sL~eL~~K~~~~l~l~~~~~~~~lvL 47 (80)
T cd06536 12 RQKQHGVAAS-----SLEELRIKACESLGFDSSSAPITLVL 47 (80)
T ss_pred CCeeEeEEcC-----CHHHHHHHHHHHhCCCCCCCceEEEE
Confidence 3455555543 46899999999999985434566554
No 39
>PF08948 DUF1859: Domain of unknown function (DUF1859); InterPro: IPR015043 This entry is represented by Bacteriophage PRD1, P5. This protein has no known function though it is sometimes found in the N terminus of bacteriophage spike proteins []. ; PDB: 1W8X_N.
Probab=28.22 E-value=20 Score=25.52 Aligned_cols=28 Identities=36% Similarity=0.610 Sum_probs=7.8
Q ss_pred CCceEEEEeeCCCceEEE----------EeecCCCCHHHH
Q 036136 33 PKGHFAVYVGENQKKRFV----------IPVSFLNQPSFQ 62 (100)
Q Consensus 33 pkG~~aVyVG~~e~~Rfv----------Vp~~~L~hp~F~ 62 (100)
..||+|+.|-. +-.|+ +|+-|||.|+-+
T Consensus 86 ~QGYfPlL~~~--~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T PF08948_consen 86 KQGYFPLLVPG--RAKFVVRHTGSGKKSVPMFFLNFTIAQ 123 (126)
T ss_dssp --SS--EEE----SSSSEEEEEEEESS----S--------
T ss_pred Ccccceeeccc--hhhhhhhhccCCCcceeeEEEeceeee
Confidence 46999999953 34444 788899988744
No 40
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=27.56 E-value=2.3e+02 Score=23.40 Aligned_cols=45 Identities=20% Similarity=0.446 Sum_probs=32.8
Q ss_pred cCCCceEEEEeeC-------------------CCceEEEEeecC--CCCHHHHHHHHhhHHhcCCc
Q 036136 31 VVPKGHFAVYVGE-------------------NQKKRFVIPVSF--LNQPSFQELLSKAEEEFGFD 75 (100)
Q Consensus 31 ~vpkG~~aVyVG~-------------------~e~~RfvVp~~~--L~hp~F~~LL~~aeEEfG~~ 75 (100)
..+++.+.|.||. ++.-|+.||++| =|..-.++..+.+.+-||-+
T Consensus 141 ~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~ 206 (322)
T PRK02797 141 RQRAGKMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAE 206 (322)
T ss_pred ccCCCceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcc
Confidence 3467889999995 134599999999 56556666666677778843
No 41
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=27.45 E-value=65 Score=24.37 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=28.0
Q ss_pred eEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeeeCcHH
Q 036136 47 KRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIPCRED 88 (100)
Q Consensus 47 ~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IPC~~~ 88 (100)
++-++-.+-.. -.++.|.++||+-.|...++-.+++|++..
T Consensus 33 ~g~I~d~~~~~-~~l~~l~~~a~~~~g~~~~~vvisVP~~~~ 73 (239)
T TIGR02529 33 DGIVVDFLGAV-EIVRRLKDTLEQKLGIELTHAATAIPPGTI 73 (239)
T ss_pred CCeEEEhHHHH-HHHHHHHHHHHHHhCCCcCcEEEEECCCCC
Confidence 44444433332 358888888888888876667899998654
No 42
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.33 E-value=3.2e+02 Score=22.07 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=39.3
Q ss_pred CCceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeee--CcHHHHHHHHHhhcc
Q 036136 33 PKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIP--CREDIFINVTSSLNE 99 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+.+...|.||+ +. ..-.....-.++.++.|+..+ .+.+| ++.+.|...+..||.
T Consensus 32 ~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~e~~l~~~I~~lN~ 87 (294)
T PRK14187 32 FPCLIVILVGD-DP----------ASQLYVRNKQRKAEMLGLRSE--TILLPSTISESSLIEKINELNN 87 (294)
T ss_pred CCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34788899997 21 123456667788899999865 57777 778889888888864
No 43
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.23 E-value=3.3e+02 Score=21.84 Aligned_cols=53 Identities=26% Similarity=0.367 Sum_probs=39.4
Q ss_pred CceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeee--CcHHHHHHHHHhhcc
Q 036136 34 KGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIP--CREDIFINVTSSLNE 99 (100)
Q Consensus 34 kG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
.+...|.||+ +. ..-....--.++.+|.|++.+ .+.+| ++.++|...+..+|.
T Consensus 34 P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~s~~el~~~I~~lN~ 88 (285)
T PRK10792 34 PGLAVVLVGS-DP----------ASQVYVASKRKACEEVGFVSR--SYDLPETTSEAELLALIDELNA 88 (285)
T ss_pred ceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 3777888997 21 122355667788899999865 57787 899999999998874
No 44
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.61 E-value=3.4e+02 Score=21.74 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=39.7
Q ss_pred CCceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeee--CcHHHHHHHHHhhcc
Q 036136 33 PKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIP--CREDIFINVTSSLNE 99 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+.+...|.||++ . ..-....--.++.|+.|+..+ .+.+| ++.++|+..+..+|.
T Consensus 32 ~P~Laii~vg~d-~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 87 (284)
T PRK14190 32 VPGLAVILVGDD-P----------ASHSYVRGKKKAAEKVGIYSE--LYEFPADITEEELLALIDRLNA 87 (284)
T ss_pred CCeEEEEEeCCC-H----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 347788889972 1 123455677788999999865 57788 778899999988865
No 45
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=26.33 E-value=93 Score=25.57 Aligned_cols=51 Identities=22% Similarity=0.402 Sum_probs=37.6
Q ss_pred CceEEEEeecCCCC--HHHHHHHHh---hHHhcCCcCCCCceeeeCcHHHHHHHHHhhcc
Q 036136 45 QKKRFVIPVSFLNQ--PSFQELLSK---AEEEFGFDHPMGGLTIPCREDIFINVTSSLNE 99 (100)
Q Consensus 45 e~~RfvVp~~~L~h--p~F~~LL~~---aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (100)
..+=|..|.+.|-. .-|++.|.. +.++.. + =.|.+-||+..|+.++..++.
T Consensus 12 ~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~---~-idisVhCDv~iF~WLm~yv~~ 67 (317)
T PF11822_consen 12 EKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWE---E-IDISVHCDVHIFEWLMRYVKG 67 (317)
T ss_pred cceeeeccHHHHHHhhHHHHHHHhhcccccCcCC---C-cceEEecChhHHHHHHHHhhc
Confidence 56779999888754 559999965 333322 2 358999999999999987653
No 46
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=25.67 E-value=21 Score=29.81 Aligned_cols=25 Identities=40% Similarity=0.741 Sum_probs=19.3
Q ss_pred ccccCCCceEEEEeeCCCce-EEEEe
Q 036136 28 TSKVVPKGHFAVYVGENQKK-RFVIP 52 (100)
Q Consensus 28 ~~~~vpkG~~aVyVG~~e~~-RfvVp 52 (100)
..--+|.|.|++|||-+.-. .|-||
T Consensus 86 n~i~iPh~sf~~y~g~~~ie~~~~vp 111 (366)
T PRK13277 86 NAIFVPNRSFAVYVGYDAIENEFKVP 111 (366)
T ss_pred CeEEecCCCeEEEecHHHHhhcCCCC
Confidence 45678999999999973323 68888
No 47
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=25.32 E-value=1e+02 Score=19.86 Aligned_cols=27 Identities=26% Similarity=0.602 Sum_probs=17.7
Q ss_pred ceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhh
Q 036136 35 GHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKA 68 (100)
Q Consensus 35 G~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~a 68 (100)
=|+|+++++ .+..|| ..+.+.+||++-
T Consensus 25 rH~p~~i~~---~~l~v~----~d~~l~~~L~~l 51 (87)
T PF05194_consen 25 RHWPLFIEE---DELYVP----YDHVLEELLRKL 51 (87)
T ss_dssp TT--EEEET---TEEEEE------HHHHHHHHHT
T ss_pred CccceEEcC---CEEEec----CcHHHHHHHHHC
Confidence 489999998 388888 566677787763
No 48
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=25.12 E-value=85 Score=23.31 Aligned_cols=36 Identities=22% Similarity=0.516 Sum_probs=28.2
Q ss_pred ceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCC
Q 036136 35 GHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHP 77 (100)
Q Consensus 35 G~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~ 77 (100)
|+++++||-|-... .+-|...+|++...++++.+.+
T Consensus 1 g~lvlFiGAG~S~~-------~glP~W~~Ll~~l~~~~~~~~~ 36 (242)
T cd01406 1 GRVVIFVGAGVSVS-------SGLPDWKTLLDEIASELGLEID 36 (242)
T ss_pred CCEEEEecCccccc-------cCCCChHHHHHHHHHHcCCccc
Confidence 78899999753333 4779999999999999987643
No 49
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.01 E-value=3.7e+02 Score=21.71 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=40.2
Q ss_pred CCceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeee--CcHHHHHHHHHhhcc
Q 036136 33 PKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIP--CREDIFINVTSSLNE 99 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+.+...+.||++ . ..-.....-.++.|+.|...+ .+.+| ++.+.+...+..||.
T Consensus 33 ~P~LaiI~vg~d-~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~lN~ 88 (301)
T PRK14194 33 EPALAVILVGND-P----------ASQVYVRNKILRAEEAGIRSL--EHRLPADTSQARLLALIAELNA 88 (301)
T ss_pred CCeEEEEEeCCC-h----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHcC
Confidence 448888999972 1 123356677789999999875 57887 788999999988875
No 50
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.98 E-value=3.5e+02 Score=21.34 Aligned_cols=54 Identities=13% Similarity=0.243 Sum_probs=39.0
Q ss_pred CCceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceee--eCcHHHHHHHHHhhcc
Q 036136 33 PKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTI--PCREDIFINVTSSLNE 99 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~I--PC~~~~Fe~vl~~l~~ 99 (100)
+.+...|+||+ +. ..-.....-.++.++.|.+.. -+.+ .|+.+.|+.++..++.
T Consensus 33 ~p~L~~i~vg~-~~----------~s~~Y~~~~~~~~~~~Gi~~~--~~~l~~~~~~~~l~~~i~~Ln~ 88 (283)
T PRK14192 33 TPILATILVGD-DP----------ASATYVRMKGNACRRVGMDSL--KVELPQETTTEQLLAKIEELNA 88 (283)
T ss_pred CCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCeEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34888999997 21 123466777788899998864 4667 4888889998888764
No 51
>PF06344 Parecho_VpG: Parechovirus Genome-linked protein; InterPro: IPR009407 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C)) []. This entry consists of the genome-linked protein Vpg type P3B.; GO: 0019015 viral genome
Probab=23.72 E-value=34 Score=17.23 Aligned_cols=12 Identities=42% Similarity=0.656 Sum_probs=9.2
Q ss_pred ccccCCCceEEE
Q 036136 28 TSKVVPKGHFAV 39 (100)
Q Consensus 28 ~~~~vpkG~~aV 39 (100)
.+..-|||.|||
T Consensus 7 lp~~kpkgtfpv 18 (20)
T PF06344_consen 7 LPVAKPKGTFPV 18 (20)
T ss_pred ccccccCCcccc
Confidence 455668999987
No 52
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=23.46 E-value=1.8e+02 Score=21.19 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=30.9
Q ss_pred HHHHHHHHhhHHhcCCcCCCCceeeeCcHHHHHHHHHhhcc
Q 036136 59 PSFQELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLNE 99 (100)
Q Consensus 59 p~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 99 (100)
|.|....-..-++.|.+.+ |.-++|.+...-+.+...++.
T Consensus 19 P~iv~~~~~~l~~~g~~~e-GIFR~~g~~~~i~~l~~~l~~ 58 (196)
T cd04395 19 PLIVEVCCNIVEARGLETV-GIYRVPGNNAAISALQEELNR 58 (196)
T ss_pred ChHHHHHHHHHHHcCCCCc-cceeCCCcHHHHHHHHHHHhc
Confidence 5555555556678899887 999999999888888877764
No 53
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=23.16 E-value=70 Score=27.84 Aligned_cols=44 Identities=32% Similarity=0.561 Sum_probs=36.5
Q ss_pred ccCC-CceEEEEeeCCCceEEEEee-----cCCCCHH-HHHHHHhhHHhcCC
Q 036136 30 KVVP-KGHFAVYVGENQKKRFVIPV-----SFLNQPS-FQELLSKAEEEFGF 74 (100)
Q Consensus 30 ~~vp-kG~~aVyVG~~e~~RfvVp~-----~~L~hp~-F~~LL~~aeEEfG~ 74 (100)
..+| ||.+|+++-. ++.||-|-+ .|+|-+. -++||++=-.|||-
T Consensus 91 ei~~~kg~lP~LT~~-~kGRy~lII~ENl~kYlnld~wNR~LLdkYC~ey~V 141 (487)
T PF12062_consen 91 EIASGKGDLPVLTDN-DKGRYSLIIFENLLKYLNLDSWNRELLDKYCREYGV 141 (487)
T ss_pred EEccCCCCCCccccC-CCCcEEEEEehhHHHHcCChHHHHHHHHHHhHccCc
Confidence 3445 6899999976 788998887 8999998 89999998888863
No 54
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.46 E-value=4.1e+02 Score=21.27 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=39.9
Q ss_pred CCceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeee--CcHHHHHHHHHhhcc
Q 036136 33 PKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIP--CREDIFINVTSSLNE 99 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
..+...|.||++ . ..-.....-.++.+++|++.+ .+.+| ++.+.|...+..||.
T Consensus 30 ~P~Laii~vg~d-~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 30 ESCLAVILVGDN-P----------ASQTYVKSKAKACEECGIKSL--VYHLNENTTQNELLALINTLNH 85 (282)
T ss_pred CceEEEEEeCCC-H----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 347888999972 1 112355667788899999865 67788 888999999988864
No 55
>COG4862 MecA Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]
Probab=22.42 E-value=58 Score=25.63 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.7
Q ss_pred CHHHHHHHHhhHHhcCCcCCCCceeee
Q 036136 58 QPSFQELLSKAEEEFGFDHPMGGLTIP 84 (100)
Q Consensus 58 hp~F~~LL~~aeEEfG~~~~~G~L~IP 84 (100)
|-+|-++++.+.+|-+|..+ |||+|-
T Consensus 38 EE~F~~mMdEl~~ee~F~~~-GpL~iq 63 (224)
T COG4862 38 EELFYEMMDELNLEEDFKDE-GPLWIQ 63 (224)
T ss_pred HHHHHHHHHhcCCccccccC-CceEEE
Confidence 56899999999999999876 999874
No 56
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=22.08 E-value=1.5e+02 Score=19.24 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=17.4
Q ss_pred CCHHHHHHH-H---hhHHhcCCcCCCCceee
Q 036136 57 NQPSFQELL-S---KAEEEFGFDHPMGGLTI 83 (100)
Q Consensus 57 ~hp~F~~LL-~---~aeEEfG~~~~~G~L~I 83 (100)
..|.|++.| . .+=+||||.-+ ..+.|
T Consensus 15 ~Dp~Fr~~Ll~DPraaL~e~G~~~P-~~~~i 44 (77)
T TIGR03793 15 EDEAFKQALLTNPKEALEREGVQVP-AEVEV 44 (77)
T ss_pred cCHHHHHHHHHCHHHHHHHhCCCCC-CceEE
Confidence 468999965 3 44567899876 44443
No 57
>PF14317 YcxB: YcxB-like protein
Probab=21.69 E-value=1.6e+02 Score=16.35 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=22.7
Q ss_pred CCceEEEEeeCCCceEEEEeecCCCCHHHHHHH
Q 036136 33 PKGHFAVYVGENQKKRFVIPVSFLNQPSFQELL 65 (100)
Q Consensus 33 pkG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL 65 (100)
-+.++-+|++. ..-++||-+.++.-...++.
T Consensus 28 ~~~~~~l~~~~--~~~~~iPk~~f~~~e~~~f~ 58 (62)
T PF14317_consen 28 TKDYFYLYLGK--NQAFIIPKRAFSEEEKEEFR 58 (62)
T ss_pred eCCEEEEEECC--CeEEEEEHHHCCHhHHHHHH
Confidence 35778888985 69999999998844444443
No 58
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=21.33 E-value=97 Score=20.53 Aligned_cols=20 Identities=10% Similarity=0.370 Sum_probs=18.0
Q ss_pred CceeeeCcHHHHHHHHHhhc
Q 036136 79 GGLTIPCREDIFINVTSSLN 98 (100)
Q Consensus 79 G~L~IPC~~~~Fe~vl~~l~ 98 (100)
..+.+-|+++.|+++++.|.
T Consensus 65 ~~i~f~c~~e~L~~Li~~Lk 84 (95)
T cd04751 65 PDINFTCTLEQLQDLVNKLK 84 (95)
T ss_pred ceEEEEeCHHHHHHHHHHHH
Confidence 47999999999999998875
No 59
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=21.19 E-value=2.7e+02 Score=18.78 Aligned_cols=56 Identities=21% Similarity=0.361 Sum_probs=35.8
Q ss_pred cCCCceEEEEeeCCCceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeee--CcHHHHHHHHHhhcc
Q 036136 31 VVPKGHFAVYVGENQKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIP--CREDIFINVTSSLNE 99 (100)
Q Consensus 31 ~vpkG~~aVyVG~~e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
..+.+...|+||+ +. ..-.......++.+++|..-. ...+| ++.+.|...+..+|.
T Consensus 27 ~~~P~Laii~vg~-d~----------~S~~Y~~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~i~~lN~ 84 (117)
T PF00763_consen 27 GITPKLAIILVGD-DP----------ASISYVRSKQKAAEKLGIEFE--LIELPEDISEEELLELIEKLNE 84 (117)
T ss_dssp T---EEEEEEES---H----------HHHHHHHHHHHHHHHHT-EEE--EEEE-TTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCC-Ch----------hHHHHHHHHHHHHHHcCCceE--EEECCCCcCHHHHHHHHHHHhC
Confidence 4566888899997 21 112367778889999998864 56776 677888888887763
No 60
>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.
Probab=21.12 E-value=65 Score=18.24 Aligned_cols=22 Identities=36% Similarity=0.743 Sum_probs=16.3
Q ss_pred HhhHHhcCCc--CCCCceeeeCcH
Q 036136 66 SKAEEEFGFD--HPMGGLTIPCRE 87 (100)
Q Consensus 66 ~~aeEEfG~~--~~~G~L~IPC~~ 87 (100)
++.+.++|.. |.||..-.||+.
T Consensus 8 e~~A~~~GC~G~H~mg~~WMPC~~ 31 (34)
T PF12518_consen 8 EKRAKELGCKGAHKMGDKWMPCSN 31 (34)
T ss_pred HHHHHHcCCcchhhccCccccCcc
Confidence 3455678865 668999999974
No 61
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=20.98 E-value=63 Score=19.78 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHHhhHHhcCCc
Q 036136 55 FLNQPSFQELLSKAEEEFGFD 75 (100)
Q Consensus 55 ~L~hp~F~~LL~~aeEEfG~~ 75 (100)
.+|||.|+..++.-+|.=|..
T Consensus 5 l~~h~~~g~~I~~w~~~r~i~ 25 (71)
T PF04304_consen 5 LLNHRLFGPYIRNWEEHRGIP 25 (71)
T ss_pred HHcCchhHHHHHHHHHCCCcC
Confidence 579999999999998875554
No 62
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=20.52 E-value=1.4e+02 Score=19.64 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=23.5
Q ss_pred CceEEEEeecCCCCHHHHHHHHhhHHhcCCcCCCCceeeeC
Q 036136 45 QKKRFVIPVSFLNQPSFQELLSKAEEEFGFDHPMGGLTIPC 85 (100)
Q Consensus 45 e~~RfvVp~~~L~hp~F~~LL~~aeEEfG~~~~~G~L~IPC 85 (100)
..+|+=|=++ .+++|+.++.+-|+.+. .+++|=+
T Consensus 12 r~~k~GV~A~-----sL~eL~~K~~~~l~l~~--~~~~lvL 45 (78)
T cd01615 12 RSRKKGVAAS-----SLEELLSKACEKLKLPS--APVTLVL 45 (78)
T ss_pred CCeeEEEEcC-----CHHHHHHHHHHHcCCCC--CCeEEEE
Confidence 3456655543 46899999999999973 3555544
No 63
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=20.26 E-value=1.5e+02 Score=20.05 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=24.6
Q ss_pred HHHHHhhHHhcCCcCCCCceeeeCcHHHHHHHHHhhc
Q 036136 62 QELLSKAEEEFGFDHPMGGLTIPCREDIFINVTSSLN 98 (100)
Q Consensus 62 ~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~ 98 (100)
.+|-++-.+-.|..+| ||-.+.|..++-..+
T Consensus 45 ~~Ly~~lc~~~G~~~D------pCvldvfr~av~~a~ 75 (93)
T PF11731_consen 45 EELYERLCALTGQRHD------PCVLDVFRCAVYFAN 75 (93)
T ss_pred HHHHHHHHHHcCCcCC------cHHHHHHHHHHHHHc
Confidence 4666667777788887 899999999987654
Done!