BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036141
MTWIMGSIDQSLILNLKLHKTAKDMWEYLKKVYNQDNTAKRSHLEYEIARYSQGNLSIQN
YFSGFQNLWAEYVDMIYVQVPIESLADVQEVHEQSKRDQFLMKLRPKYEAARSNLMNRDL
SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHWKSKGRDMRQVQCFSCKEYR
HIVVKCAKKFCNYCKKPGHIIKECPTRPQNCQASQAVVAS

High Scoring Gene Products

Symbol, full name Information P value
AT1G21280 protein from Arabidopsis thaliana 3.2e-08
gag
Gag polyprotein 		protein from Equine infectious anemia virus (CLONE 1369) 0.00051

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036141
        (220 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2014907 - symbol:AT1G21280 "AT1G21280" species...   141  3.2e-08   1
UNIPROTKB|P69730 - symbol:gag "Gag polyprotein" species:1...   113  0.00051   1


>TAIR|locus:2014907 [details] [associations]
            symbol:AT1G21280 "AT1G21280" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 UniGene:At.21118 UniGene:At.69963
            EMBL:BT003899 EMBL:BT004931 EMBL:AY773814 IPI:IPI00545975
            RefSeq:NP_173550.1 ProteinModelPortal:Q84JT5 IntAct:Q84JT5
            PRIDE:Q84JT5 DNASU:838724 EnsemblPlants:AT1G21280.1 GeneID:838724
            KEGG:ath:AT1G21280 TAIR:At1g21280 InParanoid:Q84JT5 OMA:WMELSEY
            PhylomeDB:Q84JT5 Genevestigator:Q84JT5 Uniprot:Q84JT5
        Length = 237

 Score = 141 (54.7 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 40/138 (28%), Positives = 63/138 (45%)

Query:     1 MTWIMGSIDQSLILNLKLHKTAKDMWEYLKKVYNQDNTAKRSHLEYEIARYSQGNLSIQN 60
             M W+M S+   L+ ++   +TA  MWE L++V+      K   L   +A   QG  S++ 
Sbjct:    87 MYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEE 146

Query:    61 YFSGFQNLWAEYVDMIYVQVP--------IESLADVQEVHEQSKRDQFLM--KLRPKYEA 110
             YF     +W E  +  Y  +P         E     +E  E+ +R +FLM  KL   +EA
Sbjct:   147 YFGKLSKVWMELSE--YAPIPECKCGGCNCECTKRAEEAREKEQRYEFLMGLKLNQGFEA 204

Query:   111 ARSNLMNRDLSPSLDVCF 128
               + +M +   PSL   F
Sbjct:   205 VTTKIMFQKPPPSLHEAF 222


>UNIPROTKB|P69730 [details] [associations]
            symbol:gag "Gag polyprotein" species:11670 "Equine
            infectious anemia virus (CLONE 1369)" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000721 InterPro:IPR001878
            InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
            InterPro:IPR012344 Pfam:PF00098 Pfam:PF00607 PROSITE:PS50158
            SMART:SM00343 GO:GO:0019048 GO:GO:0046872 GO:GO:0005198
            GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
            GO:GO:0019028 EMBL:M16575 PIR:A03949 RefSeq:NP_056901.1
            ProteinModelPortal:P69730 SMR:P69730 IntAct:P69730 GeneID:1489984
            GO:GO:0019076 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
            Gene3D:1.10.375.10 InterPro:IPR014834 Pfam:PF08723 SUPFAM:SSF47353
            SUPFAM:SSF47943 SUPFAM:SSF47836 Uniprot:P69730
        Length = 486

 Score = 113 (44.8 bits), Expect = 0.00051, P = 0.00051
 Identities = 44/159 (27%), Positives = 69/159 (43%)

Query:    54 GNLSIQNYFSGFQNLWAEYVDMIYVQVPIESLADVQEVHEQSKRDQFLMKLRPKYEAARS 113
             G    QN   G +  + E+VD +  Q  I+S    QE+   SK     + ++   E  R 
Sbjct:   270 GKPKAQNIRQGAKEPYPEFVDRLLSQ--IKSEGHPQEI---SKFLTDTLTIQNANEECR- 323

Query:   114 NLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHWKSKGRDMRQVQ- 172
             N M R L P   +  K     +     Q ++   K     +A        KG  ++  Q 
Sbjct:   324 NAM-RHLRPEDTLEEKMYACRDIGTTKQKMMLLAKALQTGLAGPFKGGALKGGPLKAAQT 382

Query:   173 CFSCKEYRHIVVKC-AKKFCNYCKKPGHIIKECPTRPQN 210
             C++C +  H+  +C A K C  CK+PGH  K+C + P+N
Sbjct:   383 CYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRSVPKN 421


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.131   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      220       220   0.00094  112 3  11 22  0.49    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  212 KB (2118 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.51u 0.15s 24.66t   Elapsed:  00:00:02
  Total cpu time:  24.51u 0.15s 24.66t   Elapsed:  00:00:02
  Start:  Sat May 11 01:54:01 2013   End:  Sat May 11 01:54:03 2013

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