BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036141
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2M3Z|A Chain A, Nmr Solution Structure Of Hiv-1 Nucleocapsid Protein In
Complex With An Inhibitor Displaying A 2 Inhibitors:1 Nc
Stoichiometry
Length = 55
Score = 33.9 bits (76), Expect = 0.074, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 162 KSKGRDMRQ-VQCFSCKEYRHIVVKCA---KKFCNYCKKPGHIIKECPTRPQN 210
K R+ R+ V+CF+C + HI C KK C C K GH +K+C R N
Sbjct: 3 KGNFRNQRKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 55
>pdb|1A1T|A Chain A, Structure Of The Hiv-1 Nucleocapsid Protein Bound To The
Sl3 Psi-Rna Recognition Element, Nmr, 25 Structures
pdb|1MFS|A Chain A, Dynamical Behavior Of The Hiv-1 Nucleocapsid Protein; Nmr,
30 Structures
Length = 55
Score = 33.5 bits (75), Expect = 0.089, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIVVKCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C + HI C KK C C K GH +K+C R N
Sbjct: 11 KTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 55
>pdb|1F6U|A Chain A, Nmr Structure Of The Hiv-1 Nucleocapsid Protein Bound To
Stem-Loop Sl2 Of The Psi-Rna Packaging Signal.
Implications For Genome Recognition
Length = 56
Score = 33.5 bits (75), Expect = 0.089, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIVVKCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C + HI C KK C C K GH +K+C R N
Sbjct: 11 KTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 55
>pdb|2BL6|A Chain A, Solution Structure Of The Zn Complex Of Eiav Ncp11(22-58)
Peptide, Including Two Cchc Zn-Binding Motifs
Length = 37
Score = 32.3 bits (72), Expect = 0.18, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 173 CFSCKEYRHIVVKC-AKKFCNYCKKPGHIIKEC 204
C++C + H+ +C A K C CK+PGH K+C
Sbjct: 3 CYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQC 35
>pdb|2L4L|A Chain A, Structural Insights Into The Ctar Dna Recognition By The
Hiv-1 Nucleocapsid Protein: Role Of Sugar Deoxyriboses
In The Binding Polarity Of Nc
Length = 45
Score = 32.3 bits (72), Expect = 0.21, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIVVKCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C + H C KK C C K GH +K+C R N
Sbjct: 1 KNVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 45
>pdb|1AAF|A Chain A, Nucleocapsid Zinc Fingers Detected In Retroviruses: Exafs
Studies On Intact Viruses And The Solution-State
Structure Of The Nucleocapsid Protein From Hiv-1
Length = 55
Score = 32.3 bits (72), Expect = 0.22, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 166 RDMRQV-QCFSCKEYRHIVVKCA---KKFCNYCKKPGHIIKECPTRPQN 210
R+ R++ +CF+C + HI C K+ C C K GH +K+C R N
Sbjct: 7 RNQRKIIKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQAN 55
>pdb|2EXF|A Chain A, Solution Structure Of The Hiv-1 Nucleocapsid (Ncp7(12-55))
Complexed With The Dna (-) Primer Binding Site
pdb|2JZW|A Chain A, How The Hiv-1 Nucleocapsid Protein Binds And Destabilises
The (-)primer Binding Site During Reverse Transcription
Length = 44
Score = 32.0 bits (71), Expect = 0.31, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 171 VQCFSCKEYRHIVVKCA---KKFCNYCKKPGHIIKECPTRPQN 210
V+CF+C + H C KK C C K GH +K+C R N
Sbjct: 2 VKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 44
>pdb|2CQF|A Chain A, Solution Structure Of The Zinc-Finger Domain In Lin-28
Length = 63
Score = 31.2 bits (69), Expect = 0.42, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 172 QCFSCKEYRHIVVKCA----KKFCNYCKKPGHIIKECPTRPQNCQASQA 216
+C++C H +C K C++C+ H++ CP + Q ++Q
Sbjct: 9 RCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQQGPSAQG 57
>pdb|2YSA|A Chain A, Solution Structure Of The Zinc Finger Cchc Domain From The
Human Retinoblastoma-Binding Protein 6 (Retinoblastoma-
Binding Q Protein 1, Rbq-1)
Length = 55
Score = 31.2 bits (69), Expect = 0.45, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 191 CNYCKKPGHIIKECPT 206
C C KPGH IK CPT
Sbjct: 10 CFRCGKPGHYIKNCPT 25
>pdb|1BJ6|A Chain A, 1h Nmr Of (12-53) Ncp7D(ACGCC) COMPLEX, 10 STRUCTURES
pdb|1ESK|A Chain A, Solution Structure Of Ncp7 From Hiv-1
Length = 42
Score = 30.4 bits (67), Expect = 0.74, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 171 VQCFSCKEYRHIVVKCA---KKFCNYCKKPGHIIKECPTR 207
V+CF+C + H C KK C C K GH +K+C R
Sbjct: 2 VKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTER 41
>pdb|1U6P|A Chain A, Nmr Structure Of The Mlv Encapsidation Signal Bound To The
Nucleocapsid Protein
pdb|1WWD|A Chain A, Nmr Structure Determined For Mlv Nc Complex With Rna
Sequence Aacagu
pdb|1WWE|A Chain A, Nmr Structure Determined For Mlv Nc Complex With Rna
Sequence Uuuugcu
pdb|1WWF|A Chain A, Nmr Structure Determined For Mlv Nc Complex With Rna
Sequence Ccuccgu
pdb|1WWG|A Chain A, Nmr Structure Determined For Mlv Nc Complex With Rna
Sequence Uaucug
Length = 56
Score = 30.4 bits (67), Expect = 0.77, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 191 CNYCKKPGHIIKECPTRPQ 209
C YCK+ GH K+CP +P+
Sbjct: 26 CAYCKEKGHWAKDCPKKPR 44
>pdb|1A6B|B Chain B, Nmr Structure Of The Complex Between The Zinc Finger
Protein Ncp10 Of Moloney Murine Leukemia Virus And A
Sequence Of The Psi-Packaging Domain Of Hiv-1, 20
Structures
Length = 40
Score = 30.4 bits (67), Expect = 0.89, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 191 CNYCKKPGHIIKECPTRPQ 209
C YCK+ GH K+CP +P+
Sbjct: 13 CAYCKEKGHWAKDCPKKPR 31
>pdb|1SV6|A Chain A, Crystal Structure Of 2-Hydroxypentadienoic Acid Hydratase
From Escherichia Coli
pdb|1SV6|B Chain B, Crystal Structure Of 2-Hydroxypentadienoic Acid Hydratase
From Escherichia Coli
pdb|1SV6|C Chain C, Crystal Structure Of 2-Hydroxypentadienoic Acid Hydratase
From Escherichia Coli
pdb|1SV6|D Chain D, Crystal Structure Of 2-Hydroxypentadienoic Acid Hydratase
From Escherichia Coli
pdb|1SV6|E Chain E, Crystal Structure Of 2-Hydroxypentadienoic Acid Hydratase
From Escherichia Coli
Length = 269
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 100 FLMKLRPKYEAARSNLMNRDLSPSLDVCFKEL 131
F L+P+ EA + ++NRDL P+ D+ F EL
Sbjct: 96 FSRVLQPRIEAEIALVLNRDL-PATDITFDEL 126
>pdb|2WQT|A Chain A, Dodecahedral Assembly Of Mhpd
pdb|2WQT|B Chain B, Dodecahedral Assembly Of Mhpd
pdb|2WQT|C Chain C, Dodecahedral Assembly Of Mhpd
pdb|2WQT|D Chain D, Dodecahedral Assembly Of Mhpd
pdb|2WQT|E Chain E, Dodecahedral Assembly Of Mhpd
pdb|2WQT|F Chain F, Dodecahedral Assembly Of Mhpd
pdb|2WQT|G Chain G, Dodecahedral Assembly Of Mhpd
pdb|2WQT|H Chain H, Dodecahedral Assembly Of Mhpd
pdb|2WQT|I Chain I, Dodecahedral Assembly Of Mhpd
pdb|2WQT|J Chain J, Dodecahedral Assembly Of Mhpd
pdb|2WQT|K Chain K, Dodecahedral Assembly Of Mhpd
pdb|2WQT|L Chain L, Dodecahedral Assembly Of Mhpd
pdb|2WQT|M Chain M, Dodecahedral Assembly Of Mhpd
pdb|2WQT|N Chain N, Dodecahedral Assembly Of Mhpd
pdb|2WQT|O Chain O, Dodecahedral Assembly Of Mhpd
pdb|2WQT|P Chain P, Dodecahedral Assembly Of Mhpd
pdb|2WQT|Q Chain Q, Dodecahedral Assembly Of Mhpd
pdb|2WQT|R Chain R, Dodecahedral Assembly Of Mhpd
pdb|2WQT|S Chain S, Dodecahedral Assembly Of Mhpd
pdb|2WQT|T Chain T, Dodecahedral Assembly Of Mhpd
Length = 270
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 100 FLMKLRPKYEAARSNLMNRDLSPSLDVCFKEL 131
F L+P+ EA + ++NRDL P+ D+ F EL
Sbjct: 97 FSRVLQPRIEAEIALVLNRDL-PATDITFDEL 127
>pdb|3TRZ|A Chain A, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|B Chain B, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|C Chain C, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|D Chain D, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|E Chain E, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|F Chain F, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TS2|A Chain A, Mouse Lin28a In Complex With Let-7g Microrna Pre-Element
pdb|3TS2|B Chain B, Mouse Lin28a In Complex With Let-7g Microrna Pre-Element
Length = 148
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIVVKCA----KKFCNYCKKPGHIIKECPTRPQNCQASQA 216
+ KG D +C++C H +C K C++C+ H++ CP + Q +SQ
Sbjct: 93 RPKGGD----RCYNCGGLDHHAKECKLPPQPKKCHFCQSINHMVASCPLKAQQGPSSQG 147
>pdb|3TS0|A Chain A, Mouse Lin28a In Complex With Let-7f-1 Microrna Pre-Element
pdb|3TS0|B Chain B, Mouse Lin28a In Complex With Let-7f-1 Microrna Pre-Element
Length = 146
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIVVKCA----KKFCNYCKKPGHIIKECPTRPQNCQASQA 216
+ KG D +C++C H +C K C++C+ H++ CP + Q +SQ
Sbjct: 91 RPKGGD----RCYNCGGLDHHAKECKLPPQPKKCHFCQSINHMVASCPLKAQQGPSSQG 145
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 170 QVQCFSCKEY--RHIVVKCAKKFCNYC 194
++QC C EY + + CA FC+YC
Sbjct: 53 ELQCIICSEYFIEAVTLNCAHSFCSYC 79
>pdb|2EC7|A Chain A, Solution Structure Of Human Immunodificiency Virus Type-2
Nucleocapsid Protein
Length = 49
Score = 28.5 bits (62), Expect = 2.7, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 171 VQCFSCKEYRHIVVKCA---KKFCNYCKKPGHIIKECPTR 207
++C++C + H +C ++ C C K GH++ +CP R
Sbjct: 7 IRCWNCGKEGHSARQCRAPRRQGCWKCGKTGHVMAKCPER 46
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 170 QVQCFSCKEY--RHIVVKCAKKFCNYC 194
++QC C EY + + CA FC+YC
Sbjct: 64 ELQCIICSEYFIEAVTLNCAHSFCSYC 90
>pdb|2X8Y|A Chain A, Crystal Structure Of Ance
pdb|2X8Z|A Chain A, Crystal Structure Of Ance-Captopril Complex
pdb|2X90|A Chain A, Crystal Structure Of Ance-Enalaprilat Complex
pdb|2X91|A Chain A, Crystal Structure Of Ance-Lisinopril Complex
pdb|2X96|A Chain A, Crystal Structure Of Ance-Rxpa380 Complex
pdb|2X97|A Chain A, Crystal Structure Of Ance-Rxp407 Complex
pdb|2XHM|A Chain A, Crystal Structure Of Ance-K26 Complex
pdb|3ZQZ|A Chain A, Crystal Structure Of Ance In Complex With A Selenium
Analogue Of Captopril
pdb|4AA1|A Chain A, Crystal Structure Of Ance In Complex With Angiotensin-Ii
pdb|4AA2|A Chain A, Crystal Structure Of Ance In Complex With Bradykinin
Potentiating Peptide B
pdb|4ASQ|A Chain A, Crystal Structure Of Ance In Complex With Bradykinin
pdb|4ASR|A Chain A, Crystal Structure Of Ance In Complex With Thr6-Bradykinin
Length = 598
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 28 YLKKVYNQDNTAKRSHLEYEIARYSQGNLS---IQNYFSGFQNLWAEYVDMIYVQVPIES 84
Y ++ Y++ TA RS E RY + N + N+ SG + EY D + Q +
Sbjct: 149 YWREFYDKAGTAVRSQFE----RYVELNTKAAKLNNFTSGAEAWLDEYEDDTFEQQLEDI 204
Query: 85 LADVQEVHEQ 94
AD++ +++Q
Sbjct: 205 FADIRPLYQQ 214
>pdb|2X92|A Chain A, Crystal Structure Of Ance-Ramiprilat Complex
pdb|2X93|A Chain A, Crystal Structure Of Ance-Trandolaprilat Complex
pdb|2X94|A Chain A, Crystal Structure Of Ance-Perindoprilat Complex
pdb|2X95|A Chain A, Crystal Structure Of Ance-Lisinopril-Tryptophan Analogue,
Lisw-S Complex
Length = 599
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 28 YLKKVYNQDNTAKRSHLEYEIARYSQGNLS---IQNYFSGFQNLWAEYVDMIYVQVPIES 84
Y ++ Y++ TA RS E RY + N + N+ SG + EY D + Q +
Sbjct: 149 YWREFYDKAGTAVRSQFE----RYVELNTKAAKLNNFTSGAEAWLDEYEDDTFEQQLEDI 204
Query: 85 LADVQEVHEQ 94
AD++ +++Q
Sbjct: 205 FADIRPLYQQ 214
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 170 QVQCFSCKEY--RHIVVKCAKKFCNYC 194
++QC C EY + + CA FC+YC
Sbjct: 53 ELQCIICSEYFIEAVTLNCAHSFCSYC 79
>pdb|1J36|A Chain A, Crystal Structure Of Drosophila Ance
pdb|1J36|B Chain B, Crystal Structure Of Drosophila Ance
pdb|1J37|A Chain A, Crystal Structure Of Drosophila Ance
pdb|1J37|B Chain B, Crystal Structure Of Drosophila Ance
pdb|1J38|A Chain A, Crystal Structure Of Drosophila Ance
pdb|1J38|B Chain B, Crystal Structure Of Drosophila Ance
Length = 607
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 28 YLKKVYNQDNTAKRSHLEYEIARYSQGNLS---IQNYFSGFQNLWAEYVDMIYVQVPIES 84
Y ++ Y++ TA RS E RY + N + N+ SG + EY D + Q +
Sbjct: 152 YWREFYDKAGTAVRSQFE----RYVELNTKAAKLNNFTSGAEAWLDEYEDDTFEQQLEDI 207
Query: 85 LADVQEVHEQ 94
AD++ +++Q
Sbjct: 208 FADIRPLYQQ 217
>pdb|3PGQ|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of S.
Cerevisiae Acetyl Coa Carboxylase In Complex With
Pinoxaden
pdb|3PGQ|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of S.
Cerevisiae Acetyl Coa Carboxylase In Complex With
Pinoxaden
pdb|3PGQ|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of S.
Cerevisiae Acetyl Coa Carboxylase In Complex With
Pinoxaden
Length = 764
Score = 26.9 bits (58), Expect = 8.3, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 103 KLRPKYEAARSNLMNRDLSPSLDVCFKELLREEQR----LATQTILQQNKMHDNA 153
+L KY RS L N+ L+P + + L + +R + Q LQ +HD +
Sbjct: 571 RLDDKYRELRSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRS 625
>pdb|1UYV|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i
V1967i Mutant
pdb|1UYV|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i
V1967i Mutant
pdb|1UYV|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i
V1967i Mutant
Length = 737
Score = 26.9 bits (58), Expect = 8.4, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 103 KLRPKYEAARSNLMNRDLSPSLDVCFKELLREEQR----LATQTILQQNKMHDNA 153
+L KY RS L N+ L+P + + L + +R + Q LQ +HD +
Sbjct: 565 RLDDKYRELRSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRS 619
>pdb|1UYS|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
pdb|1UYS|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
pdb|1UYS|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
Length = 737
Score = 26.9 bits (58), Expect = 8.4, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 103 KLRPKYEAARSNLMNRDLSPSLDVCFKELLREEQR----LATQTILQQNKMHDNA 153
+L KY RS L N+ L+P + + L + +R + Q LQ +HD +
Sbjct: 565 RLDDKYRELRSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRS 619
>pdb|1UYR|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Diclofop
pdb|1UYR|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Diclofop
pdb|1UYT|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1UYT|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1UYT|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain
Length = 737
Score = 26.9 bits (58), Expect = 8.4, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 103 KLRPKYEAARSNLMNRDLSPSLDVCFKELLREEQR----LATQTILQQNKMHDNA 153
+L KY RS L N+ L+P + + L + +R + Q LQ +HD +
Sbjct: 565 RLDDKYRELRSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRS 619
>pdb|1OD2|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD2|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain
Length = 805
Score = 26.9 bits (58), Expect = 8.4, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 103 KLRPKYEAARSNLMNRDLSPSLDVCFKELLREEQR----LATQTILQQNKMHDNA 153
+L KY RS L N+ L+P + + L + +R + Q LQ +HD +
Sbjct: 618 RLDDKYRELRSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRS 672
>pdb|3TV5|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TV5|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TV5|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TVU|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVU|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVU|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVW|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TVW|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TVW|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TZ3|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
pdb|3TZ3|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
pdb|3TZ3|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
Length = 769
Score = 26.9 bits (58), Expect = 8.4, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 103 KLRPKYEAARSNLMNRDLSPSLDVCFKELLREEQR----LATQTILQQNKMHDNA 153
+L KY RS L N+ L+P + + L + +R + Q LQ +HD +
Sbjct: 574 RLDDKYRELRSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRS 628
>pdb|3H0J|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 2
pdb|3H0J|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 2
pdb|3H0J|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 2
pdb|3H0S|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 7
pdb|3H0S|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 7
pdb|3H0S|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 7
pdb|3H0Q|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 3
pdb|3H0Q|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 3
pdb|3H0Q|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Compound 3
Length = 769
Score = 26.9 bits (58), Expect = 8.4, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 103 KLRPKYEAARSNLMNRDLSPSLDVCFKELLREEQR----LATQTILQQNKMHDNA 153
+L KY RS L N+ L+P + + L + +R + Q LQ +HD +
Sbjct: 574 RLDDKYRELRSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRS 628
>pdb|1W2X|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186
pdb|1W2X|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186
pdb|1W2X|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186
pdb|3K8X|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With
Tepraloxydim
pdb|3K8X|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With
Tepraloxydim
pdb|3K8X|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
Acetyl-Coenzyme A Carboxylase In Complex With
Tepraloxydim
Length = 758
Score = 26.9 bits (58), Expect = 8.6, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 103 KLRPKYEAARSNLMNRDLSPSLDVCFKELLREEQR----LATQTILQQNKMHDNA 153
+L KY RS L N+ L+P + + L + +R + Q LQ +HD +
Sbjct: 571 RLDDKYRELRSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRS 625
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.131 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,307,896
Number of Sequences: 62578
Number of extensions: 239829
Number of successful extensions: 675
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 50
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)