BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036142
         (114 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1J83|A Chain A, Structure Of Fam17 Carbohydrate Binding Module From
           Clostridium Cellulovorans
 pdb|1J83|B Chain B, Structure Of Fam17 Carbohydrate Binding Module From
           Clostridium Cellulovorans
          Length = 180

 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 75  PPAPRKRRPSRCNFNNGATREFFTPPDLETVFKLHVEKAN 114
           P AP+       +FN+G T+ F   PD   +  ++VE AN
Sbjct: 2   PTAPKDFSSGFWDFNDGTTQGFGVNPD-SPITAINVENAN 40


>pdb|1J84|A Chain A, Structure Of Fam17 Carbohydrate Binding Module From
           Clostridium Cellulovorans With Bound Cellotetraose
          Length = 180

 Score = 27.3 bits (59), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 75  PPAPRKRRPSRCNFNNGATREFFTPPDLETVFKLHVEKAN 114
           P AP+       +FN+G T+ F   PD   +  ++VE AN
Sbjct: 2   PTAPKDFSSGFWDFNDGTTQGFGVNPD-SPITAINVENAN 40


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,884,949
Number of Sequences: 62578
Number of extensions: 78135
Number of successful extensions: 105
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 3
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)