BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036142
         (114 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LZ60|SMR3_ARATH Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis
          thaliana GN=SMR3 PE=2 SV=1
          Length = 115

 Score = 32.3 bits (72), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 10/59 (16%)

Query: 46 EGDYED---EEEAGLSTTPTAKEARIPE--RLPCPPAPRKRRPSRCNFNNGATREFFTP 99
          + D+ED    EE G  T PT+ + +IPE     CPPAPRK +P+R    +  T+   TP
Sbjct: 30 DSDHEDPTVNEEEGCKT-PTSSDHKIPEVKYTLCPPAPRKPKPNR----SSGTKRKLTP 83


>sp|C1DLQ0|MUTL_AZOVD DNA mismatch repair protein MutL OS=Azotobacter vinelandii (strain
           DJ / ATCC BAA-1303) GN=mutL PE=3 SV=1
          Length = 641

 Score = 32.0 bits (71), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 9/59 (15%)

Query: 47  GDYEDEEEAGLSTTPTAKEARIPERLPC------PPAPRKRRPSRCNFNNGATREFFTP 99
           G++  +EE  LS TP A+E   P            P+P   RP+R     G  REFF P
Sbjct: 360 GEFRGQEEMPLSATPPAREPARPAAWKGAGAGYQAPSP---RPARSAEAGGVYREFFAP 415


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.130    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,789,467
Number of Sequences: 539616
Number of extensions: 1974213
Number of successful extensions: 4716
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 4685
Number of HSP's gapped (non-prelim): 60
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)