Query 036142
Match_columns 114
No_of_seqs 110 out of 145
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 16:46:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgp_C Inner centromere protei 27.0 17 0.00058 21.6 0.5 14 94-107 16-29 (43)
2 1k4z_A CAP, adenylyl cyclase-a 16.6 33 0.0011 25.4 0.3 11 13-23 5-15 (159)
3 1k8f_A CAP, adenylyl cyclase-a 15.4 37 0.0013 25.1 0.3 12 13-24 4-15 (157)
4 2b0r_A Possible adenyl cyclase 12.4 51 0.0017 25.4 0.3 14 11-24 43-56 (202)
5 2gk4_A Conserved hypothetical 12.1 88 0.003 23.8 1.6 25 15-39 1-25 (232)
6 3h09_A IGA1 protease, immunogl 10.0 92 0.0031 29.2 1.2 12 15-26 272-283 (989)
7 3sze_A Serine protease ESPP; p 9.2 1E+02 0.0035 28.8 1.2 13 14-26 216-228 (968)
8 3syj_A Adhesion and penetratio 9.2 1E+02 0.0035 29.0 1.2 13 14-26 226-238 (1011)
9 2wkd_A ORF34P2; SSB, single-st 8.2 1.1E+02 0.0037 21.8 0.7 17 17-33 40-56 (119)
10 1wxr_A Haemoglobin protease; h 8.0 1.2E+02 0.0042 28.5 1.2 13 13-25 214-226 (1048)
No 1
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=27.03 E-value=17 Score=21.61 Aligned_cols=14 Identities=14% Similarity=0.788 Sum_probs=9.8
Q ss_pred cCccCCCchHHHHh
Q 036142 94 REFFTPPDLETVFK 107 (114)
Q Consensus 94 ~~FF~~PDLesvF~ 107 (114)
+.||+++|++.+|-
T Consensus 16 ~Q~~~p~D~d~iFG 29 (43)
T 2vgp_C 16 QQYYKPIDVDRMYG 29 (43)
T ss_dssp HHHHSCCCHHHHTT
T ss_pred HHHccCCCHHHHcC
Confidence 34677778887774
No 2
>1k4z_A CAP, adenylyl cyclase-associated protein; right-handed parallel beta-helix, intertwined dimer; 2.30A {Saccharomyces cerevisiae} SCOP: b.80.5.1 PDB: 1kq5_A
Probab=16.59 E-value=33 Score=25.39 Aligned_cols=11 Identities=36% Similarity=0.613 Sum_probs=8.7
Q ss_pred ccCCCcceEEe
Q 036142 13 LESENKKWVIA 23 (114)
Q Consensus 13 ~~~~~kkwvia 23 (114)
++.+|+||+|-
T Consensus 5 ~eL~g~KW~VE 15 (159)
T 1k4z_A 5 KELVGNKWFIE 15 (159)
T ss_dssp EEEETTEEEEE
T ss_pred EEecCCEEEEE
Confidence 56789999994
No 3
>1k8f_A CAP, adenylyl cyclase-associated protein; actin bindin structural genomics, PSI, protein structure initiative; 2.80A {Homo sapiens} SCOP: b.80.5.1
Probab=15.42 E-value=37 Score=25.12 Aligned_cols=12 Identities=50% Similarity=0.877 Sum_probs=9.2
Q ss_pred ccCCCcceEEec
Q 036142 13 LESENKKWVIAG 24 (114)
Q Consensus 13 ~~~~~kkwviag 24 (114)
++.+|+||+|-.
T Consensus 4 ~eL~g~KW~VEn 15 (157)
T 1k8f_A 4 LELEGKKWRVEN 15 (157)
T ss_dssp EEEETTEEEEES
T ss_pred eEEeCCEEEEEe
Confidence 567799999943
No 4
>2b0r_A Possible adenyl cyclase-associated protein; structural genomics consortium, SGC, unknown function; 2.60A {Cryptosporidium parvum}
Probab=12.38 E-value=51 Score=25.43 Aligned_cols=14 Identities=7% Similarity=0.313 Sum_probs=10.3
Q ss_pred CCccCCCcceEEec
Q 036142 11 GGLESENKKWVIAG 24 (114)
Q Consensus 11 ~~~~~~~kkwviag 24 (114)
..++.+|+||+|-.
T Consensus 43 P~~eL~G~KW~VEn 56 (202)
T 2b0r_A 43 PKVELQKDTYLVEN 56 (202)
T ss_dssp CEEEEETTEEEEEC
T ss_pred CeEEEeCCEEEEEe
Confidence 34667899999943
No 5
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=12.09 E-value=88 Score=23.82 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=19.9
Q ss_pred CCCcceEEeccccccccCCeeeccc
Q 036142 15 SENKKWVIAGIAIRASLKPIKTTKT 39 (114)
Q Consensus 15 ~~~kkwviagi~l~~~LkPi~t~~~ 39 (114)
|.||+.+|.|-+-+-||.||+.-..
T Consensus 1 ~~gk~vlVTgG~T~E~IDpVR~ItN 25 (232)
T 2gk4_A 1 SNAMKILVTSGGTSEAIDSVRSITN 25 (232)
T ss_dssp --CCEEEEECSBCEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCcccccCceeeccC
Confidence 4689999999998999999987643
No 6
>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta helix, hydrolase, M protease, secreted, transmembrane, virulence; 1.75A {Haemophilus influenzae}
Probab=10.00 E-value=92 Score=29.23 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=9.4
Q ss_pred CCCcceEEeccc
Q 036142 15 SENKKWVIAGIA 26 (114)
Q Consensus 15 ~~~kkwviagi~ 26 (114)
...|||||+|..
T Consensus 272 ~~~~kWvl~Gvl 283 (989)
T 3h09_A 272 REKGKWLFLGSY 283 (989)
T ss_dssp TTTTEEEEEEEE
T ss_pred cccceEEEEEEe
Confidence 456999999973
No 7
>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A {Escherichia coli O157}
Probab=9.19 E-value=1e+02 Score=28.81 Aligned_cols=13 Identities=46% Similarity=1.068 Sum_probs=10.1
Q ss_pred cCCCcceEEeccc
Q 036142 14 ESENKKWVIAGIA 26 (114)
Q Consensus 14 ~~~~kkwviagi~ 26 (114)
|...+||||.|..
T Consensus 216 D~~~~KWvl~GVl 228 (968)
T 3sze_A 216 DNQKKKWVVAGTV 228 (968)
T ss_dssp ETTTTEEEEEEEE
T ss_pred EcCCCeEEEEEEE
Confidence 4557999999983
No 8
>3syj_A Adhesion and penetration protein autotransporter; bacterial aggregation and biofilm formation, SELF-associatin autotransporter (SAAT); 2.20A {Haemophilus influenzae}
Probab=9.16 E-value=1e+02 Score=28.96 Aligned_cols=13 Identities=46% Similarity=1.076 Sum_probs=9.7
Q ss_pred cCCCcceEEeccc
Q 036142 14 ESENKKWVIAGIA 26 (114)
Q Consensus 14 ~~~~kkwviagi~ 26 (114)
|...+||||.|..
T Consensus 226 D~~~~KWvl~Gv~ 238 (1011)
T 3syj_A 226 DAEKQKWLINGIL 238 (1011)
T ss_dssp ETTTTEEEEEEEE
T ss_pred EcCCCeEEEEEEe
Confidence 3456899999864
No 9
>2wkd_A ORF34P2; SSB, single-stranded DNA binding, DNA binding protein; 2.10A {Lactococcus phage P2} PDB: 2wkc_A
Probab=8.17 E-value=1.1e+02 Score=21.79 Aligned_cols=17 Identities=12% Similarity=0.008 Sum_probs=13.1
Q ss_pred CcceEEeccccccccCC
Q 036142 17 NKKWVIAGIAIRASLKP 33 (114)
Q Consensus 17 ~kkwviagi~l~~~LkP 33 (114)
+-||||+||-|--.+.+
T Consensus 40 ~~k~~ygsaf~pd~v~~ 56 (119)
T 2wkd_A 40 NVKVAYGSAFMPDFIQM 56 (119)
T ss_dssp -CCCCEEEEECCTTCCT
T ss_pred ceeeEEEEEeccccccC
Confidence 46999999988766655
No 10
>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} PDB: 3ak5_A
Probab=8.04 E-value=1.2e+02 Score=28.47 Aligned_cols=13 Identities=31% Similarity=1.004 Sum_probs=0.0
Q ss_pred ccCCCcceEEecc
Q 036142 13 LESENKKWVIAGI 25 (114)
Q Consensus 13 ~~~~~kkwviagi 25 (114)
.|.+.+||||.|.
T Consensus 214 yD~~~kKWvLvGv 226 (1048)
T 1wxr_A 214 FDTVQNKWVLVGV 226 (1048)
T ss_dssp EETTTTEEEEEEE
T ss_pred EEcCCCeEEEEEE
Done!