BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036143
RLERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCN
LYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVS
TVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQGLIMRDIEDVTSL
NDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIV
EVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPK
LKRLSLRLPPLDNGQPSPSPALEVIKIRKELWESLEWDQANAKDVLNPYCKFEQS

High Scoring Gene Products

Symbol, full name Information P value
AT4G27220 protein from Arabidopsis thaliana 7.1e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036143
        (355 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2131689 - symbol:AT4G27220 species:3702 "Arabi...   137  7.1e-06   1


>TAIR|locus:2131689 [details] [associations]
            symbol:AT4G27220 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0006952 "defense response"
            evidence=IEA;ISS] [GO:0043531 "ADP binding" evidence=IEA]
            InterPro:IPR000767 InterPro:IPR002182 Pfam:PF00931 PRINTS:PR00364
            GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006952
            EMBL:AL161566 eggNOG:COG4886 GO:GO:0043531 HOGENOM:HOG000091014
            ProtClustDB:CLSN2686073 EMBL:AL030978 EMBL:DQ446872 IPI:IPI00548786
            PIR:T05746 RefSeq:NP_194452.1 UniGene:At.65426
            ProteinModelPortal:O81825 SMR:O81825 PRIDE:O81825
            EnsemblPlants:AT4G27220.1 GeneID:828830 KEGG:ath:AT4G27220
            TAIR:At4g27220 InParanoid:O81825 OMA:LAINIMA PhylomeDB:O81825
            ArrayExpress:O81825 Genevestigator:O81825 Uniprot:O81825
        Length = 919

 Score = 137 (53.3 bits), Expect = 7.1e-06, P = 7.1e-06
 Identities = 44/130 (33%), Positives = 73/130 (56%)

Query:   173 DIEDVTSLNDVFSKEQGLVNA---AKFSHLKALWFSYCPNLQKLFSLQLLAA-LQNLEFL 228
             ++E++ SL++V  +  G +N     +   LK L  S C  L++LFS Q+LA  L NL+ +
Sbjct:   769 NLEEL-SLDNVNLESIGELNGFLGMRLQKLKLLQVSGCRQLKRLFSDQILAGTLPNLQEI 827

Query:   229 VVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNS 288
              V SC R EE+   N      +    ++   LP+L  + L +LP+L+S+C+D  VL   S
Sbjct:   828 KVVSCLRLEELF--NFSSVPVDFCAESL---LPKLTVIKLKYLPQLRSLCNDRVVL--ES 880

Query:   289 LQEIQITPSC 298
             L+ +++  SC
Sbjct:   881 LEHLEVE-SC 889


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      355       330   0.00089  116 3  11 22  0.39    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  235 KB (2127 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.93u 0.08s 27.01t   Elapsed:  00:00:01
  Total cpu time:  26.93u 0.08s 27.01t   Elapsed:  00:00:01
  Start:  Sat May 11 01:56:47 2013   End:  Sat May 11 01:56:48 2013

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