Query 036143
Match_columns 355
No_of_seqs 175 out of 1955
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 09:52:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.7 3E-18 6.5E-23 177.9 9.7 102 10-114 138-242 (968)
2 PLN03210 Resistant to P. syrin 99.7 2.1E-17 4.5E-22 172.9 15.1 90 3-96 602-692 (1153)
3 PLN00113 leucine-rich repeat r 99.7 9.5E-18 2E-22 174.2 10.4 106 4-114 108-218 (968)
4 KOG4658 Apoptotic ATPase [Sign 99.7 4.7E-18 1E-22 170.1 1.5 310 2-346 559-883 (889)
5 KOG0444 Cytoskeletal regulator 99.7 2.3E-18 5E-23 159.3 -3.8 272 4-327 94-369 (1255)
6 PLN03210 Resistant to P. syrin 99.7 4.1E-16 9E-21 163.2 11.8 265 2-305 623-910 (1153)
7 KOG0444 Cytoskeletal regulator 99.6 2E-18 4.3E-23 159.7 -6.4 109 4-114 23-132 (1255)
8 KOG4194 Membrane glycoprotein 99.6 9.6E-17 2.1E-21 147.5 -0.4 254 7-295 144-424 (873)
9 KOG4194 Membrane glycoprotein 99.6 1.9E-15 4.2E-20 139.1 4.3 297 1-332 113-428 (873)
10 KOG0472 Leucine-rich repeat pr 99.4 8.8E-14 1.9E-18 123.0 -0.3 107 194-330 432-538 (565)
11 KOG4658 Apoptotic ATPase [Sign 99.3 4.9E-12 1.1E-16 127.2 10.7 270 2-308 584-867 (889)
12 KOG0617 Ras suppressor protein 99.3 5.3E-14 1.2E-18 110.7 -3.4 109 4-114 47-156 (264)
13 KOG0472 Leucine-rich repeat pr 99.3 8.4E-14 1.8E-18 123.1 -3.9 229 4-277 82-312 (565)
14 PRK15370 E3 ubiquitin-protein 99.3 6E-12 1.3E-16 124.7 8.4 124 162-331 302-426 (754)
15 KOG4237 Extracellular matrix p 99.3 5.2E-13 1.1E-17 117.9 -0.6 112 1-114 78-194 (498)
16 KOG0618 Serine/threonine phosp 99.2 7.2E-13 1.6E-17 128.2 -1.4 244 35-331 241-487 (1081)
17 PRK15387 E3 ubiquitin-protein 99.2 2.9E-11 6.2E-16 119.5 9.3 84 2-100 213-297 (788)
18 KOG0618 Serine/threonine phosp 99.1 6.1E-12 1.3E-16 121.9 -0.9 102 7-112 40-141 (1081)
19 KOG0617 Ras suppressor protein 99.1 1.3E-11 2.7E-16 97.5 -0.7 109 2-114 23-133 (264)
20 PRK15387 E3 ubiquitin-protein 99.0 1.2E-09 2.5E-14 108.3 10.0 223 1-299 233-456 (788)
21 PRK15370 E3 ubiquitin-protein 98.9 1.6E-09 3.4E-14 107.7 5.0 230 2-295 190-423 (754)
22 KOG2120 SCF ubiquitin ligase, 98.8 5.3E-10 1.2E-14 95.8 -0.9 183 13-273 186-375 (419)
23 PF14580 LRR_9: Leucine-rich r 98.7 6.1E-09 1.3E-13 85.0 2.9 107 2-114 9-119 (175)
24 PF13855 LRR_8: Leucine rich r 98.7 9.7E-09 2.1E-13 68.9 3.3 59 12-70 1-60 (61)
25 cd00116 LRR_RI Leucine-rich re 98.7 5.1E-09 1.1E-13 95.1 1.7 105 7-114 18-143 (319)
26 PF14580 LRR_9: Leucine-rich r 98.6 1.7E-08 3.7E-13 82.4 2.1 108 5-114 34-146 (175)
27 cd00116 LRR_RI Leucine-rich re 98.5 2E-08 4.3E-13 91.2 0.6 219 7-274 46-291 (319)
28 KOG4237 Extracellular matrix p 98.5 6.4E-09 1.4E-13 92.4 -3.1 269 14-327 69-353 (498)
29 PF12799 LRR_4: Leucine Rich r 98.4 1.1E-07 2.4E-12 58.7 2.1 40 12-51 1-40 (44)
30 KOG0532 Leucine-rich repeat (L 98.4 4.9E-08 1.1E-12 90.7 -1.3 100 2-106 110-210 (722)
31 PLN03150 hypothetical protein; 98.2 2.8E-06 6.1E-11 84.0 6.4 84 13-99 419-504 (623)
32 KOG4341 F-box protein containi 98.2 2E-07 4.2E-12 83.8 -1.9 275 13-327 139-433 (483)
33 PF13855 LRR_8: Leucine rich r 98.2 1.4E-06 3.1E-11 58.2 2.7 60 35-96 1-60 (61)
34 KOG3207 Beta-tubulin folding c 98.1 6.7E-07 1.4E-11 80.8 1.2 208 10-231 119-334 (505)
35 COG4886 Leucine-rich repeat (L 98.1 3.5E-06 7.5E-11 79.0 4.7 104 7-114 111-215 (394)
36 KOG3207 Beta-tubulin folding c 98.1 4.4E-07 9.5E-12 82.0 -1.5 76 26-101 112-188 (505)
37 COG4886 Leucine-rich repeat (L 98.0 5.8E-06 1.2E-10 77.5 4.7 109 2-114 128-238 (394)
38 KOG0532 Leucine-rich repeat (L 98.0 2.4E-07 5.3E-12 86.2 -4.8 109 1-114 86-195 (722)
39 PLN03150 hypothetical protein; 98.0 8.2E-06 1.8E-10 80.7 5.1 89 4-95 433-525 (623)
40 KOG1259 Nischarin, modulator o 98.0 1.2E-06 2.7E-11 75.6 -0.7 63 194-273 349-411 (490)
41 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.8E-10 49.4 3.3 36 35-71 1-36 (44)
42 KOG1259 Nischarin, modulator o 97.9 1.8E-06 3.8E-11 74.7 -1.6 102 7-114 302-405 (490)
43 KOG2120 SCF ubiquitin ligase, 97.8 2.1E-06 4.5E-11 74.2 -2.5 88 196-299 285-374 (419)
44 KOG4341 F-box protein containi 97.7 6.1E-07 1.3E-11 80.7 -6.9 86 9-94 161-251 (483)
45 KOG2982 Uncharacterized conser 97.7 2.9E-05 6.3E-10 67.2 2.9 105 7-114 40-152 (418)
46 KOG3665 ZYG-1-like serine/thre 97.5 5.7E-05 1.2E-09 75.0 2.3 83 11-96 147-231 (699)
47 PRK15386 type III secretion pr 97.5 0.00024 5.2E-09 65.5 6.0 86 196-312 51-138 (426)
48 KOG4579 Leucine-rich repeat (L 97.3 2.3E-05 5E-10 60.2 -1.9 99 13-114 28-129 (177)
49 PRK15386 type III secretion pr 97.2 0.00081 1.8E-08 62.0 6.9 54 143-212 55-109 (426)
50 KOG4579 Leucine-rich repeat (L 97.1 2.8E-05 6E-10 59.7 -3.0 86 8-97 49-135 (177)
51 KOG0531 Protein phosphatase 1, 97.1 0.00013 2.8E-09 68.8 0.5 86 8-99 91-176 (414)
52 PF00560 LRR_1: Leucine Rich R 97.0 0.00023 4.9E-09 36.6 0.6 20 13-32 1-20 (22)
53 KOG1859 Leucine-rich repeat pr 97.0 3E-05 6.6E-10 74.7 -4.9 87 7-99 182-268 (1096)
54 KOG0531 Protein phosphatase 1, 96.9 0.0003 6.5E-09 66.4 0.3 90 2-98 107-199 (414)
55 KOG3665 ZYG-1-like serine/thre 96.8 0.00074 1.6E-08 67.2 3.0 88 9-98 170-263 (699)
56 KOG1859 Leucine-rich repeat pr 96.7 0.00014 2.9E-09 70.4 -3.0 89 7-99 204-293 (1096)
57 PF00560 LRR_1: Leucine Rich R 96.5 0.00094 2E-08 34.3 0.8 22 36-58 1-22 (22)
58 KOG1644 U2-associated snRNP A' 96.4 0.0041 8.9E-08 51.2 4.2 100 13-114 43-146 (233)
59 KOG2739 Leucine-rich acidic nu 96.3 0.0033 7.1E-08 53.8 3.1 86 10-98 41-129 (260)
60 KOG1909 Ran GTPase-activating 96.2 0.0009 2E-08 59.4 -0.9 90 8-98 26-133 (382)
61 KOG1909 Ran GTPase-activating 95.9 0.0031 6.7E-08 56.1 0.9 218 9-273 55-310 (382)
62 KOG1947 Leucine rich repeat pr 95.9 0.0054 1.2E-07 58.8 2.7 103 11-114 187-301 (482)
63 KOG2739 Leucine-rich acidic nu 95.7 0.0071 1.5E-07 51.7 2.5 86 27-114 35-122 (260)
64 PF13504 LRR_7: Leucine rich r 95.5 0.0061 1.3E-07 29.0 0.8 16 13-28 2-17 (17)
65 KOG1644 U2-associated snRNP A' 95.2 0.015 3.3E-07 48.0 2.8 91 2-93 54-148 (233)
66 PF13504 LRR_7: Leucine rich r 95.2 0.0093 2E-07 28.4 0.9 17 35-51 1-17 (17)
67 KOG2123 Uncharacterized conser 94.9 0.0032 7E-08 54.4 -2.1 81 11-95 18-98 (388)
68 KOG2982 Uncharacterized conser 94.8 0.011 2.4E-07 51.7 0.8 86 10-96 69-157 (418)
69 KOG2123 Uncharacterized conser 94.7 0.0024 5.1E-08 55.2 -3.3 81 9-91 38-123 (388)
70 smart00369 LRR_TYP Leucine-ric 93.8 0.037 8E-07 29.5 1.3 20 35-54 2-21 (26)
71 smart00370 LRR Leucine-rich re 93.8 0.037 8E-07 29.5 1.3 20 35-54 2-21 (26)
72 smart00369 LRR_TYP Leucine-ric 93.7 0.044 9.5E-07 29.2 1.4 20 11-30 1-20 (26)
73 smart00370 LRR Leucine-rich re 93.7 0.044 9.5E-07 29.2 1.4 20 11-30 1-20 (26)
74 KOG0473 Leucine-rich repeat pr 92.3 0.0069 1.5E-07 51.1 -4.4 86 3-92 31-118 (326)
75 KOG3864 Uncharacterized conser 92.1 0.026 5.6E-07 46.6 -1.3 69 195-276 123-191 (221)
76 PF13306 LRR_5: Leucine rich r 91.1 0.21 4.6E-06 38.3 3.0 82 7-93 7-89 (129)
77 KOG1947 Leucine rich repeat pr 90.9 0.096 2.1E-06 50.2 1.0 14 260-273 268-281 (482)
78 PF13306 LRR_5: Leucine rich r 90.4 0.36 7.8E-06 37.0 3.7 79 31-114 8-87 (129)
79 KOG3864 Uncharacterized conser 90.4 0.049 1.1E-06 45.0 -1.3 72 218-303 120-191 (221)
80 COG5238 RNA1 Ran GTPase-activa 89.7 0.3 6.6E-06 42.5 2.9 86 11-97 29-132 (388)
81 KOG0473 Leucine-rich repeat pr 87.2 0.035 7.7E-07 46.9 -4.2 63 7-70 60-122 (326)
82 smart00364 LRR_BAC Leucine-ric 80.8 0.93 2E-05 24.1 1.0 17 36-52 3-19 (26)
83 smart00365 LRR_SD22 Leucine-ri 79.7 1.2 2.6E-05 23.7 1.2 15 12-26 2-16 (26)
84 smart00367 LRR_CC Leucine-rich 79.0 1.5 3.2E-05 23.2 1.5 17 196-212 1-17 (26)
85 PF13516 LRR_6: Leucine Rich r 77.2 1.3 2.7E-05 22.8 0.8 14 12-25 2-15 (24)
86 smart00368 LRR_RI Leucine rich 64.7 4.3 9.3E-05 21.9 1.2 12 13-24 3-14 (28)
87 COG5238 RNA1 Ran GTPase-activa 56.6 16 0.00035 32.2 3.8 92 8-99 54-171 (388)
88 PF10084 DUF2322: Uncharacteri 30.3 22 0.00048 25.8 0.6 37 2-38 5-41 (100)
89 KOG3763 mRNA export factor TAP 29.6 36 0.00078 33.0 2.0 87 194-294 215-308 (585)
90 PF05725 FNIP: FNIP Repeat; I 20.9 1.5E+02 0.0032 17.7 3.0 7 262-268 13-19 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.75 E-value=3e-18 Score=177.90 Aligned_cols=102 Identities=17% Similarity=0.213 Sum_probs=48.3
Q ss_pred cccccceecCCCcccc-ccCcccccCcccceecccCcccc-cccchhhhcCCCcceeeecccCCccccchhHhhcccccc
Q 036143 10 KLLALQCLDLEYTAIK-EVPEGMEMLENLVHLTIYSKMLI-KFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRL 87 (355)
Q Consensus 10 ~l~~L~~L~L~~~~~~-~lP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 87 (355)
.+.+|++|++++|.+. .+|..++++.+|++|++++|.+. .+|..+ +++++|++|++++|.. .+..+. .++++++|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l-~~~~p~-~l~~l~~L 214 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQL-VGQIPR-ELGQMKSL 214 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCC-cCcCCh-HHcCcCCc
Confidence 3455555555555444 44555555555555555555433 344444 5555555555554322 112222 45555555
Q ss_pred cceEEEeccCcc-ccccccccccccccc
Q 036143 88 DTFVGYFSKLDD-FNTYVKSSDGQRSKH 114 (355)
Q Consensus 88 ~~L~l~~~~~~~-~~~~~~~l~~L~~L~ 114 (355)
++|++..+.... .+..++.++.|+.|.
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 555554444332 223344444444443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=2.1e-17 Score=172.87 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=58.8
Q ss_pred CCCCccccccccceecCCCccccccCcccccCcccceecccCc-ccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 3 ERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSK-MLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 3 ~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~-~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
+.+|+-....+|+.|++.++.+..+|.+++.+.+|++|+++++ .+..+|. + +.+++|++|++.+|... ..++..+
T Consensus 602 ~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l-s~l~~Le~L~L~~c~~L--~~lp~si 677 (1153)
T PLN03210 602 RCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-L-SMATNLETLKLSDCSSL--VELPSSI 677 (1153)
T ss_pred CCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-c-ccCCcccEEEecCCCCc--cccchhh
Confidence 4556222467777777777777777777777777777777776 4566664 4 67777777777766432 2233367
Q ss_pred cccccccceEEEecc
Q 036143 82 RSSDRLDTFVGYFSK 96 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~ 96 (355)
+.+++|+.|++..+.
T Consensus 678 ~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 678 QYLNKLEDLDMSRCE 692 (1153)
T ss_pred hccCCCCEEeCCCCC
Confidence 777777777776543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.73 E-value=9.5e-18 Score=174.20 Aligned_cols=106 Identities=16% Similarity=0.183 Sum_probs=74.8
Q ss_pred CCC-ccc-cccccceecCCCcccc-ccCcccccCcccceecccCcccc-cccchhhhcCCCcceeeecccCCccccchhH
Q 036143 4 RVP-SLA-KLLALQCLDLEYTAIK-EVPEGMEMLENLVHLTIYSKMLI-KFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 4 ~lP-~i~-~l~~L~~L~L~~~~~~-~lP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
.+| .+. .+++||+|++++|++. .+|. +.+.+|++|++++|.+. .+|..+ +.+++|++|++++|.. ....+.
T Consensus 108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l-~~~~p~- 182 (968)
T PLN00113 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVL-VGKIPN- 182 (968)
T ss_pred cCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcc-cccCCh-
Confidence 466 444 7888888888888776 4554 56788888888888765 567777 8888888888887543 223333
Q ss_pred hhcccccccceEEEeccCcc-ccccccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDD-FNTYVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~ 114 (355)
.++++++|++|++..+.... .+..++.++.|+.|.
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 78888888888887766543 345566777777666
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.69 E-value=4.7e-18 Score=170.07 Aligned_cols=310 Identities=17% Similarity=0.152 Sum_probs=196.7
Q ss_pred CCCCC--ccccccccceecCCCc-cccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP--SLAKLLALQCLDLEYT-AIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~-~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
+..++ .|..++.||+|||++| .+.++|++|+.|.|||||+++++.+..+|.++ ++|..|++|++..+.... .++
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l-~~Lk~L~~Lnl~~~~~l~--~~~ 635 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL-GNLKKLIYLNLEVTGRLE--SIP 635 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH-HHHHhhheeccccccccc--ccc
Confidence 34556 4788999999999999 78899999999999999999999999999999 999999999999865432 224
Q ss_pred HhhcccccccceEEEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCC----cc
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKI----CE 154 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~----~~ 154 (355)
..+..|++||+|.+...........++++..|+.|. ............. ....+..|..+.. .+
T Consensus 636 ~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~-------~ls~~~~s~~~~e-----~l~~~~~L~~~~~~l~~~~ 703 (889)
T KOG4658|consen 636 GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE-------NLSITISSVLLLE-----DLLGMTRLRSLLQSLSIEG 703 (889)
T ss_pred chhhhcccccEEEeeccccccchhhHHhhhcccchh-------hheeecchhHhHh-----hhhhhHHHHHHhHhhhhcc
Confidence 255569999999998665333223344444454444 1111111110000 0111111111110 00
Q ss_pred CC----CccccCchhHHHH-Hhhcccccccccccccccccccccc-cCCCccEEeeccCCCccccchHHHHhhcCCCCeE
Q 036143 155 RE----GVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAA-KFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFL 228 (355)
Q Consensus 155 ~~----~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L 228 (355)
.. ...+..+.+++.| +.+| ...+...... ...... .|+++..+.+.+|...+.+.|.. ..++|++|
T Consensus 704 ~~~~~~~~~~~~l~~L~~L~i~~~-~~~e~~~~~~----~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~---f~~~L~~l 775 (889)
T KOG4658|consen 704 CSKRTLISSLGSLGNLEELSILDC-GISEIVIEWE----ESLIVLLCFPNLSKVSILNCHMLRDLTWLL---FAPHLTSL 775 (889)
T ss_pred cccceeecccccccCcceEEEEcC-CCchhhcccc----cccchhhhHHHHHHHHhhccccccccchhh---ccCcccEE
Confidence 00 0111334566666 6666 2211110000 000011 26778888888998888888764 45778999
Q ss_pred EEecCCCCceecccCcchhhhhcccccccccCccccee-ecccccccceecCCCceecCCCceEEEEcCCCCccccccCC
Q 036143 229 VVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKL-WLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLR 307 (355)
Q Consensus 229 ~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~ 307 (355)
.+..|...++++.....-.. .......|.++..+ .+.+.+.++++.. ..++++.|+.+.+. .||+++.+|..
T Consensus 776 ~l~~~~~~e~~i~~~k~~~~----l~~~i~~f~~~~~l~~~~~l~~l~~i~~--~~l~~~~l~~~~ve-~~p~l~~~P~~ 848 (889)
T KOG4658|consen 776 SLVSCRLLEDIIPKLKALLE----LKELILPFNKLEGLRMLCSLGGLPQLYW--LPLSFLKLEELIVE-ECPKLGKLPLL 848 (889)
T ss_pred EEecccccccCCCHHHHhhh----cccEEecccccccceeeecCCCCceeEe--cccCccchhheehh-cCcccccCccc
Confidence 99999998888764422211 00124567777777 5778888888877 67778889999999 99999999976
Q ss_pred CCCCCCCCCCCCCCeeEEEe-hhhhhcccccCcccccccc
Q 036143 308 LPPLDNGQPSPSPALEVIKI-RKELWESLEWDQANAKDVL 346 (355)
Q Consensus 308 ~~~l~~~~~~~~~~L~~l~~-~~~~~~~l~~~~~~~~~~~ 346 (355)
...-.. .. .=+.+.. +.+|.+.+.|+++.++.++
T Consensus 849 ~~~~i~----~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 849 STLTIV----GC-EEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred ccccee----cc-ccceeecCCccceeeEEehhhhhhhhc
Confidence 532210 00 0112223 5557888999999988877
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=2.3e-18 Score=159.29 Aligned_cols=272 Identities=20% Similarity=0.228 Sum_probs=167.2
Q ss_pred CCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhc
Q 036143 4 RVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAAR 82 (355)
Q Consensus 4 ~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~ 82 (355)
.|| +|..+..|.+|||+.|++++.|.++.+-+++-.|++++|.++.+|.+++-+|+-|-.||++++.. ..+|..+.
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL---e~LPPQ~R 170 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL---EMLPPQIR 170 (1255)
T ss_pred CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh---hhcCHHHH
Confidence 477 88888888888888888888888888888888888888888888888878888888888887533 33333788
Q ss_pred ccccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCcccc
Q 036143 83 SSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIV 161 (355)
Q Consensus 83 ~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~ 161 (355)
+|.+|++|.++.+....+. +.+-.++.|+.|+ .......-...|..+...+.+..+.++...+...+ ..+-
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh-------ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP-ecly 242 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH-------MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP-ECLY 242 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCccchhhhhhh-------cccccchhhcCCCchhhhhhhhhccccccCCCcch-HHHh
Confidence 8888888888766654443 3444555555555 11111111113333332333333333333222111 0011
Q ss_pred CchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCC-CCcee
Q 036143 162 LPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCN-RNEEI 239 (355)
Q Consensus 162 ~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~-~l~~i 239 (355)
-..+|++| +.+. .++.++- -+ +.-.+|+.|.++.. +++.++.. ...|+.|+.|-+.+.. ..+.+
T Consensus 243 ~l~~LrrLNLS~N--~iteL~~---~~------~~W~~lEtLNlSrN-QLt~LP~a--vcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGN--KITELNM---TE------GEWENLETLNLSRN-QLTVLPDA--VCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred hhhhhheeccCcC--ceeeeec---cH------HHHhhhhhhccccc-hhccchHH--HhhhHHHHHHHhccCcccccCC
Confidence 12244444 4442 2221111 11 23345666666666 45543322 4566666666665433 23344
Q ss_pred cccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCC
Q 036143 240 VEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPS 319 (355)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~ 319 (355)
+. .++.+..|+.+...+. .++-++. |...+++|+.|.+ +|+.|-.+|++|..++
T Consensus 309 PS--------------GIGKL~~Levf~aanN-~LElVPE--glcRC~kL~kL~L--~~NrLiTLPeaIHlL~------- 362 (1255)
T KOG0444|consen 309 PS--------------GIGKLIQLEVFHAANN-KLELVPE--GLCRCVKLQKLKL--DHNRLITLPEAIHLLP------- 362 (1255)
T ss_pred cc--------------chhhhhhhHHHHhhcc-ccccCch--hhhhhHHHHHhcc--cccceeechhhhhhcC-------
Confidence 43 7778888888887764 5666666 6666889999999 7999999999996665
Q ss_pred CCeeEEEe
Q 036143 320 PALEVIKI 327 (355)
Q Consensus 320 ~~L~~l~~ 327 (355)
.|+++++
T Consensus 363 -~l~vLDl 369 (1255)
T KOG0444|consen 363 -DLKVLDL 369 (1255)
T ss_pred -Ccceeec
Confidence 8999888
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.66 E-value=4.1e-16 Score=163.16 Aligned_cols=265 Identities=19% Similarity=0.229 Sum_probs=168.0
Q ss_pred CCCCC-ccccccccceecCCCc-cccccCcccccCcccceecccCc-ccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP-SLAKLLALQCLDLEYT-AIKEVPEGMEMLENLVHLTIYSK-MLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~-~~~~lP~~i~~L~~L~~L~l~~~-~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+| .++.+++|++|+|+++ .++.+| .++.+++|++|++++| .+..+|..+ +++++|+.|++++|... ..++
T Consensus 623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L--~~Lp 698 (1153)
T PLN03210 623 LEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDLDMSRCENL--EILP 698 (1153)
T ss_pred ccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhh-hccCCCCEEeCCCCCCc--CccC
Confidence 56788 8899999999999988 677888 5889999999999998 788999998 99999999999988653 3334
Q ss_pred HhhcccccccceEEEeccCcc-ccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccC--
Q 036143 79 EAARSSDRLDTFVGYFSKLDD-FNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICER-- 155 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~-- 155 (355)
.-.++++|++|.+.++.... ++.. ...|+.|. +....+.. .+..+ ...+|..+.+...
T Consensus 699 -~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~-------L~~n~i~~--lP~~~------~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 699 -TGINLKSLYRLNLSGCSRLKSFPDI---STNISWLD-------LDETAIEE--FPSNL------RLENLDELILCEMKS 759 (1153)
T ss_pred -CcCCCCCCCEEeCCCCCCccccccc---cCCcCeee-------cCCCcccc--ccccc------cccccccccccccch
Confidence 22378999999987664322 2211 22344444 11111111 11111 1112222222110
Q ss_pred ----------CCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCC
Q 036143 156 ----------EGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQN 224 (355)
Q Consensus 156 ----------~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~ 224 (355)
.......+++|+.| +.+| .....++... +.+++|+.|++++|.+++.++.. .++++
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n-~~l~~lP~si---------~~L~~L~~L~Ls~C~~L~~LP~~---~~L~s 826 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDI-PSLVELPSSI---------QNLHKLEHLEIENCINLETLPTG---INLES 826 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCC-CCccccChhh---------hCCCCCCEEECCCCCCcCeeCCC---CCccc
Confidence 01111335678888 8877 5554444321 46888999999999888775432 26888
Q ss_pred CCeEEEecCCCCceecccCcc--hhh----hhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCC
Q 036143 225 LEFLVVQSCNRNEEIVEVNDE--ETQ----KELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSC 298 (355)
Q Consensus 225 L~~L~l~~~~~l~~i~~~~~~--~~~----~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c 298 (355)
|+.|++++|..+..++..... ... .-...+..+..+++|+.|.+.+|++++.++. ....+++|+.+.+. +|
T Consensus 827 L~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~-~C 903 (1153)
T PLN03210 827 LESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFS-DC 903 (1153)
T ss_pred cCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecC-CC
Confidence 999999998887666531100 000 0012333556677788888888877777766 33345677788887 88
Q ss_pred Ccccccc
Q 036143 299 PKLKRLS 305 (355)
Q Consensus 299 ~~L~~lp 305 (355)
.+|..++
T Consensus 904 ~~L~~~~ 910 (1153)
T PLN03210 904 GALTEAS 910 (1153)
T ss_pred ccccccc
Confidence 7777554
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.64 E-value=2e-18 Score=159.73 Aligned_cols=109 Identities=18% Similarity=0.249 Sum_probs=94.3
Q ss_pred CCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhc
Q 036143 4 RVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAAR 82 (355)
Q Consensus 4 ~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~ 82 (355)
..| ++..++.+++|.|..+.+.++|++++.|++|++|.+.+|.+..+-.++ +.|+.||.++++.++. ...++|.+|.
T Consensus 23 ~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGEL-s~Lp~LRsv~~R~N~L-KnsGiP~diF 100 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGEL-SDLPRLRSVIVRDNNL-KNSGIPTDIF 100 (1255)
T ss_pred cCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhh-ccchhhHHHhhhcccc-ccCCCCchhc
Confidence 578 888999999999999999999999999999999999999999998888 9999999999998654 4455555899
Q ss_pred ccccccceEEEeccCccccccccccccccccc
Q 036143 83 SSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 83 ~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
.|.-|..|+++.+.....+..+...+++-.|.
T Consensus 101 ~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLREVPTNLEYAKNSIVLN 132 (1255)
T ss_pred ccccceeeecchhhhhhcchhhhhhcCcEEEE
Confidence 99999999999888888887777777766666
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.60 E-value=9.6e-17 Score=147.52 Aligned_cols=254 Identities=17% Similarity=0.157 Sum_probs=131.4
Q ss_pred ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
++..+..||.|||+.|.|.++|.. +..=.++++|++++|.++.+-.+-|..+.+|-+|.++.+.. +..... .+.+|+
T Consensus 144 ~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r-~Fk~L~ 221 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQR-SFKRLP 221 (873)
T ss_pred HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc-cccCHH-Hhhhcc
Confidence 344567778888888877777654 44556788888888877777666557777777887776432 333333 666677
Q ss_pred cccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCch
Q 036143 86 RLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPK 164 (355)
Q Consensus 86 ~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~ 164 (355)
+|+.|++..+.+.-.. -.+..++.|+.|. +..+++.......+.+ ...++.++|+...+.+...-.+-.++
T Consensus 222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlk-------lqrN~I~kL~DG~Fy~-l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLK-------LQRNDISKLDDGAFYG-LEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred hhhhhhccccceeeehhhhhcCchhhhhhh-------hhhcCcccccCcceee-ecccceeecccchhhhhhcccccccc
Confidence 7887777666654321 2345555566555 2222222222222211 33344445555444332222122334
Q ss_pred hHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHH-----------------------HHh
Q 036143 165 DVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQ-----------------------LLA 220 (355)
Q Consensus 165 ~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-----------------------~l~ 220 (355)
.|+.| +.. +.+..+..- .| ..+++|+.|+++.. +++.+...+ .+.
T Consensus 294 ~L~~L~lS~--NaI~rih~d-----~W---sftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 294 SLEQLDLSY--NAIQRIHID-----SW---SFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred hhhhhccch--hhhheeecc-----hh---hhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 44444 443 223322221 11 34555555555555 333332221 233
Q ss_pred hcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceec-CCCceEEEEc
Q 036143 221 ALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLI-CNSLQEIQIT 295 (355)
Q Consensus 221 ~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~-~~~L~~L~i~ 295 (355)
.+++|+.|++.+. .+...+.+ -...+..+|+|++|.+.+. +++.|+. .++. |++||+|++.
T Consensus 363 ~lssL~~LdLr~N-~ls~~IED----------aa~~f~gl~~LrkL~l~gN-qlk~I~k--rAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 363 GLSSLHKLDLRSN-ELSWCIED----------AAVAFNGLPSLRKLRLTGN-QLKSIPK--RAFSGLEALEHLDLG 424 (873)
T ss_pred HhhhhhhhcCcCC-eEEEEEec----------chhhhccchhhhheeecCc-eeeecch--hhhccCcccceecCC
Confidence 4555555555432 22222211 1113445677777777665 5666665 5554 5666666664
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.56 E-value=1.9e-15 Score=139.05 Aligned_cols=297 Identities=19% Similarity=0.182 Sum_probs=176.9
Q ss_pred CCCCCC-ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
+|+.|| ......||+.|+|.+|.|..+ .+++..+.-||.||++.|.+..+|..-|.+=.++++|++..+.+ +.....
T Consensus 113 ~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~I-t~l~~~ 191 (873)
T KOG4194|consen 113 ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRI-TTLETG 191 (873)
T ss_pred hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccc-cccccc
Confidence 367899 555677799999999999877 55588999999999999999999887657778999999998643 444444
Q ss_pred HhhcccccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCC
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREG 157 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~ 157 (355)
.+..+.+|-.|.++.+.....+ ..++++++|+.|.+..| .++++ +... +.....++.+.|....+..-..
T Consensus 192 -~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN--~iriv-----e~lt-FqgL~Sl~nlklqrN~I~kL~D 262 (873)
T KOG4194|consen 192 -HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN--RIRIV-----EGLT-FQGLPSLQNLKLQRNDISKLDD 262 (873)
T ss_pred -cccccchheeeecccCcccccCHHHhhhcchhhhhhcccc--ceeee-----hhhh-hcCchhhhhhhhhhcCcccccC
Confidence 7888899999999988888776 55777999988873222 12222 1111 0011122333444444443221
Q ss_pred ccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCC
Q 036143 158 VTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRN 236 (355)
Q Consensus 158 ~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l 236 (355)
-.+-.+..++.| +... .+..+.. +|. -.+..|+.|+++.. .+..+.... -...++|+.|++++ +.+
T Consensus 263 G~Fy~l~kme~l~L~~N--~l~~vn~------g~l--fgLt~L~~L~lS~N-aI~rih~d~-WsftqkL~~LdLs~-N~i 329 (873)
T KOG4194|consen 263 GAFYGLEKMEHLNLETN--RLQAVNE------GWL--FGLTSLEQLDLSYN-AIQRIHIDS-WSFTQKLKELDLSS-NRI 329 (873)
T ss_pred cceeeecccceeecccc--hhhhhhc------ccc--cccchhhhhccchh-hhheeecch-hhhcccceeEeccc-ccc
Confidence 112334455555 4442 2222222 221 35677888888887 344333222 23567889999985 334
Q ss_pred ceecccCcchhh---------hhcc--cccccccCcccceeecccccccceecCCCceec---CCCceEEEEcCCCCccc
Q 036143 237 EEIVEVNDEETQ---------KELG--ISAITITLPRLKKLWLSFLPELKSVCSDNAVLI---CNSLQEIQITPSCPKLK 302 (355)
Q Consensus 237 ~~i~~~~~~~~~---------~~~~--~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~---~~~L~~L~i~~~c~~L~ 302 (355)
.++....-.+.. ++.+ -...+..+.+|++|+|+...- +|+.++++.. +++|++|.+. -.+++
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l--s~~IEDaa~~f~gl~~LrkL~l~--gNqlk 405 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL--SWCIEDAAVAFNGLPSLRKLRLT--GNQLK 405 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE--EEEEecchhhhccchhhhheeec--Cceee
Confidence 443321100000 0000 001344566788888876532 2333323332 6799999994 46888
Q ss_pred cccCCC-CCCCCCCCCCCCCeeEEEehhhhh
Q 036143 303 RLSLRL-PPLDNGQPSPSPALEVIKIRKELW 332 (355)
Q Consensus 303 ~lp~~~-~~l~~~~~~~~~~L~~l~~~~~~~ 332 (355)
.+|... .. +++|+++++-.+..
T Consensus 406 ~I~krAfsg--------l~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 406 SIPKRAFSG--------LEALEHLDLGDNAI 428 (873)
T ss_pred ecchhhhcc--------CcccceecCCCCcc
Confidence 887422 22 23677776644443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.36 E-value=8.8e-14 Score=123.01 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=66.1
Q ss_pred ccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 194 AKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 194 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
..+++|..|.+++. -+.++ |.. .+.+..|+.|+++.. +.+.++. .. ..+...+..+....+
T Consensus 432 ~~l~kLt~L~L~NN-~Ln~L-P~e-~~~lv~Lq~LnlS~N-rFr~lP~--------------~~-y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNN-LLNDL-PEE-MGSLVRLQTLNLSFN-RFRMLPE--------------CL-YELQTLETLLASNNQ 492 (565)
T ss_pred Hhhhcceeeecccc-hhhhc-chh-hhhhhhhheeccccc-ccccchH--------------HH-hhHHHHHHHHhcccc
Confidence 46788888888887 34443 333 567788999999854 5655553 11 222222223333345
Q ss_pred cceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEehhh
Q 036143 274 LKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRKE 330 (355)
Q Consensus 274 l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~~ 330 (355)
++++..+ +...+.+|.+|++ +...+..+|.++++.+ +|+.+++..+
T Consensus 493 i~~vd~~-~l~nm~nL~tLDL--~nNdlq~IPp~Lgnmt--------nL~hLeL~gN 538 (565)
T KOG0472|consen 493 IGSVDPS-GLKNMRNLTTLDL--QNNDLQQIPPILGNMT--------NLRHLELDGN 538 (565)
T ss_pred ccccChH-Hhhhhhhcceecc--CCCchhhCChhhcccc--------ceeEEEecCC
Confidence 6666553 2333457888888 5677888888887777 8888887443
No 11
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.34 E-value=4.9e-12 Score=127.21 Aligned_cols=270 Identities=22% Similarity=0.264 Sum_probs=156.2
Q ss_pred CCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccC-CccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGS-ETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~-~~~~~~~~~ 79 (355)
+.++| +|++|.+||||+++++.+..+|.++++|..|.|||+..+.....+.++...|.+||+|.+.... ......+.
T Consensus 584 l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~- 662 (889)
T KOG4658|consen 584 LSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLK- 662 (889)
T ss_pred cCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHH-
Confidence 56899 9999999999999999999999999999999999999985444445554779999999998754 22223333
Q ss_pred hhcccccccceEEEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCC--
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREG-- 157 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~-- 157 (355)
++.+|++|+.+.....+. .....+..+..|..+.....+ .. .........+.....++.+.+.++.+.....
T Consensus 663 el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~---~~--~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~ 736 (889)
T KOG4658|consen 663 ELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSI---EG--CSKRTLISSLGSLGNLEELSILDCGISEIVIEW 736 (889)
T ss_pred hhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhh---cc--cccceeecccccccCcceEEEEcCCCchhhccc
Confidence 566666666666643332 111222233333322211110 00 0001111222233445556666666643211
Q ss_pred ---ccccC-chhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEe-
Q 036143 158 ---VTIVL-PKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQ- 231 (355)
Q Consensus 158 ---~~~~~-~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~- 231 (355)
..... ++.+.++ +.+| .....+... ...++|+.|.+..|..++++.+. ...+..+..+.+.
T Consensus 737 ~~~~~~~~~f~~l~~~~~~~~-~~~r~l~~~----------~f~~~L~~l~l~~~~~~e~~i~~--~k~~~~l~~~i~~f 803 (889)
T KOG4658|consen 737 EESLIVLLCFPNLSKVSILNC-HMLRDLTWL----------LFAPHLTSLSLVSCRLLEDIIPK--LKALLELKELILPF 803 (889)
T ss_pred ccccchhhhHHHHHHHHhhcc-ccccccchh----------hccCcccEEEEecccccccCCCH--HHHhhhcccEEecc
Confidence 11111 4456666 7777 333322211 35689999999999988887654 3444444443332
Q ss_pred -cCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCC--ceecCCCceEEEEcCCC-CccccccCC
Q 036143 232 -SCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDN--AVLICNSLQEIQITPSC-PKLKRLSLR 307 (355)
Q Consensus 232 -~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~--~~l~~~~L~~L~i~~~c-~~L~~lp~~ 307 (355)
.....+.+ . ..+.|+++..+.+.... +.++.... ....+|.+.++.+. +| ..+..+|.+
T Consensus 804 ~~~~~l~~~-~--------------~l~~l~~i~~~~l~~~~-l~~~~ve~~p~l~~~P~~~~~~i~-~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 804 NKLEGLRML-C--------------SLGGLPQLYWLPLSFLK-LEELIVEECPKLGKLPLLSTLTIV-GCEEKLKEYPDG 866 (889)
T ss_pred cccccceee-e--------------cCCCCceeEecccCccc-hhheehhcCcccccCcccccccee-ccccceeecCCc
Confidence 11222211 1 44556665555554432 44444422 11224678889998 87 889999876
Q ss_pred C
Q 036143 308 L 308 (355)
Q Consensus 308 ~ 308 (355)
.
T Consensus 867 ~ 867 (889)
T KOG4658|consen 867 E 867 (889)
T ss_pred c
Confidence 3
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.32 E-value=5.3e-14 Score=110.73 Aligned_cols=109 Identities=19% Similarity=0.206 Sum_probs=56.4
Q ss_pred CCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhc
Q 036143 4 RVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAAR 82 (355)
Q Consensus 4 ~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~ 82 (355)
.+| .|.++.+|++|++.+|+++++|.+++.+++|+.|+++-|.+..+|.++ |.++.|+.||+.+++. ....+|..+.
T Consensus 47 ~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf-gs~p~levldltynnl-~e~~lpgnff 124 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF-GSFPALEVLDLTYNNL-NENSLPGNFF 124 (264)
T ss_pred ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc-CCCchhhhhhcccccc-ccccCCcchh
Confidence 344 555555555555555555555555555555555555555555555555 5555555555555432 2222222444
Q ss_pred ccccccceEEEeccCccccccccccccccccc
Q 036143 83 SSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 83 ~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
-|+.|+.|++..+.+.-.+..++.+++|+.|.
T Consensus 125 ~m~tlralyl~dndfe~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 125 YMTTLRALYLGDNDFEILPPDVGKLTNLQILS 156 (264)
T ss_pred HHHHHHHHHhcCCCcccCChhhhhhcceeEEe
Confidence 44555555554444444444445544444444
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.30 E-value=8.4e-14 Score=123.13 Aligned_cols=229 Identities=19% Similarity=0.166 Sum_probs=110.1
Q ss_pred CCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhc
Q 036143 4 RVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAAR 82 (355)
Q Consensus 4 ~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~ 82 (355)
.+| +++.+..+..|+.+.|++.++|++++.+.+|+.|+.++|.+.++|.++ +.+..|..++..+++. ...++.++
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i-~~~~~l~dl~~~~N~i---~slp~~~~ 157 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSI-GRLLDLEDLDATNNQI---SSLPEDMV 157 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchH-HHHhhhhhhhcccccc---ccCchHHH
Confidence 344 555555555555555555555555555555555555555555555554 5555555554444322 22222455
Q ss_pred ccccccceEEEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccC
Q 036143 83 SSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVL 162 (355)
Q Consensus 83 ~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~ 162 (355)
.+.+|..+.+.++.....++..-.++.|+.++...|. ++ ..|..++....+..+.|+...+...+.| ..
T Consensus 158 ~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-------L~--tlP~~lg~l~~L~~LyL~~Nki~~lPef--~g 226 (565)
T KOG0472|consen 158 NLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-------LE--TLPPELGGLESLELLYLRRNKIRFLPEF--PG 226 (565)
T ss_pred HHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-------hh--cCChhhcchhhhHHHHhhhcccccCCCC--Cc
Confidence 5555555555444444433322224444444311110 00 0112222222222333333333333222 34
Q ss_pred chhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecc
Q 036143 163 PKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVE 241 (355)
Q Consensus 163 ~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~ 241 (355)
+..|.++ ... ..++.++.-. ...++++..|++.+. +++..+. . +.-+++|++|++++ +.+..++.
T Consensus 227 cs~L~Elh~g~--N~i~~lpae~--------~~~L~~l~vLDLRdN-klke~Pd-e-~clLrsL~rLDlSN-N~is~Lp~ 292 (565)
T KOG0472|consen 227 CSLLKELHVGE--NQIEMLPAEH--------LKHLNSLLVLDLRDN-KLKEVPD-E-ICLLRSLERLDLSN-NDISSLPY 292 (565)
T ss_pred cHHHHHHHhcc--cHHHhhHHHH--------hcccccceeeecccc-ccccCch-H-HHHhhhhhhhcccC-CccccCCc
Confidence 4455555 333 1222222211 135677777888877 5666432 2 56678888888885 45555655
Q ss_pred cCcchhhhhcccccccccCcccceeeccccccccee
Q 036143 242 VNDEETQKELGISAITITLPRLKKLWLSFLPELKSV 277 (355)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 277 (355)
.++++ .|+.|.+.|.| ++.|
T Consensus 293 --------------sLgnl-hL~~L~leGNP-lrTi 312 (565)
T KOG0472|consen 293 --------------SLGNL-HLKFLALEGNP-LRTI 312 (565)
T ss_pred --------------ccccc-eeeehhhcCCc-hHHH
Confidence 77788 88888888875 4443
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=6e-12 Score=124.69 Aligned_cols=124 Identities=23% Similarity=0.236 Sum_probs=78.5
Q ss_pred CchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceec
Q 036143 162 LPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIV 240 (355)
Q Consensus 162 ~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~ 240 (355)
.+++|+.| +.++ .++.++. ..+++|+.|.+++| .++.+.. . + .++|+.|+++++. +..++
T Consensus 302 lp~sL~~L~Ls~N--~Lt~LP~-----------~l~~sL~~L~Ls~N-~Lt~LP~-~-l--~~sL~~L~Ls~N~-L~~LP 362 (754)
T PRK15370 302 LPSGITHLNVQSN--SLTALPE-----------TLPPGLKTLEAGEN-ALTSLPA-S-L--PPELQVLDVSKNQ-ITVLP 362 (754)
T ss_pred chhhHHHHHhcCC--ccccCCc-----------cccccceeccccCC-ccccCCh-h-h--cCcccEEECCCCC-CCcCC
Confidence 45578888 7775 3333322 23468899999888 4555332 1 2 2688999998764 45554
Q ss_pred ccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCC
Q 036143 241 EVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSP 320 (355)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~ 320 (355)
. . ..++|++|++++| .+..++. ... ++|+.|++. + .++..+|..+..+. ...|
T Consensus 363 ~--------------~--lp~~L~~LdLs~N-~Lt~LP~--~l~--~sL~~LdLs-~-N~L~~LP~sl~~~~----~~~~ 415 (754)
T PRK15370 363 E--------------T--LPPTITTLDVSRN-ALTNLPE--NLP--AALQIMQAS-R-NNLVRLPESLPHFR----GEGP 415 (754)
T ss_pred h--------------h--hcCCcCEEECCCC-cCCCCCH--hHH--HHHHHHhhc-c-CCcccCchhHHHHh----hcCC
Confidence 3 2 2368999999987 4666654 222 378888886 5 57788887765543 3345
Q ss_pred CeeEEEehhhh
Q 036143 321 ALEVIKIRKEL 331 (355)
Q Consensus 321 ~L~~l~~~~~~ 331 (355)
++..+++..+-
T Consensus 416 ~l~~L~L~~Np 426 (754)
T PRK15370 416 QPTRIIVEYNP 426 (754)
T ss_pred CccEEEeeCCC
Confidence 77788774433
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.27 E-value=5.2e-13 Score=117.91 Aligned_cols=112 Identities=22% Similarity=0.338 Sum_probs=92.9
Q ss_pred CCCCCC--ccccccccceecCCCcccccc-CcccccCcccceecccC-cccccccchhhhcCCCcceeeecccCCccccc
Q 036143 1 RLERVP--SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYS-KMLIKFPAGILPKLCNLYSLRLNWGSETSRET 76 (355)
Q Consensus 1 ~l~~lP--~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~-~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~ 76 (355)
+|+.|| +|+.+++||.|||+.|+|+.| |+.+..+..|..|-+.+ |+|+.+|.+.|++|..|+-|.+.-+.. ....
T Consensus 78 ~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i-~Cir 156 (498)
T KOG4237|consen 78 QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHI-NCIR 156 (498)
T ss_pred CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhh-cchh
Confidence 478899 999999999999999999988 88999999998887777 799999999999999999999886533 3333
Q ss_pred hhHhhcccccccceEEEeccCccccc-cccccccccccc
Q 036143 77 VQEAARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKH 114 (355)
Q Consensus 77 ~~~~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 114 (355)
.. .++.|++|..|.++.+.+..... .+..+..++.++
T Consensus 157 ~~-al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 157 QD-ALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred HH-HHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence 34 89999999999998777665554 466667777666
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.24 E-value=7.2e-13 Score=128.19 Aligned_cols=244 Identities=19% Similarity=0.217 Sum_probs=131.5
Q ss_pred cccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEeccCccccccccccccccccc
Q 036143 35 ENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 35 ~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
.+|+|++++++.+..+| ++++.+.+|+.+++..+.. ..++..+..+++|+.+.+..+.....+......+.|+.|.
T Consensus 241 ~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l---~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRL---VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred ccceeeecchhhhhcch-HHHHhcccceEecccchhH---HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeee
Confidence 45566666666566666 3336666666666555432 3333355555555555555555444444444455555554
Q ss_pred cccccceeEeecCCCccccceeccc-CCccEEEEeccCCccCCCccccCchhHHHH-Hhhcccccccccccccccccccc
Q 036143 115 FHFQVSTVYNGSAANTRFYSFLRTR-EANKSVCFYGCKICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVN 192 (355)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~L~~l~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~ 192 (355)
+..+.+..... ..+... ..+..++.+.+.+......+-.....|+.| +.+.+..... +|.+
T Consensus 317 -------L~~N~L~~lp~-~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c---~p~l------ 379 (1081)
T KOG0618|consen 317 -------LQSNNLPSLPD-NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC---FPVL------ 379 (1081)
T ss_pred -------ehhccccccch-HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc---hhhh------
Confidence 22222222110 000000 001111111111111111222345577777 6664111111 2222
Q ss_pred cccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccc
Q 036143 193 AAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLP 272 (355)
Q Consensus 193 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 272 (355)
..+.+|+.|+++.+ ++.. ++...+.+++.|+.|.+++ +.++.++. .+..+++|++|.....
T Consensus 380 -~~~~hLKVLhLsyN-rL~~-fpas~~~kle~LeeL~LSG-NkL~~Lp~--------------tva~~~~L~tL~ahsN- 440 (1081)
T KOG0618|consen 380 -VNFKHLKVLHLSYN-RLNS-FPASKLRKLEELEELNLSG-NKLTTLPD--------------TVANLGRLHTLRAHSN- 440 (1081)
T ss_pred -ccccceeeeeeccc-cccc-CCHHHHhchHHhHHHhccc-chhhhhhH--------------HHHhhhhhHHHhhcCC-
Confidence 47889999999998 6665 4555588999999999997 66777775 6678888888877554
Q ss_pred ccceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCC-CCeeEEEehhhh
Q 036143 273 ELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPS-PALEVIKIRKEL 331 (355)
Q Consensus 273 ~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~-~~L~~l~~~~~~ 331 (355)
.+..++. ...++.|+.+++ +|.+|..+-... ..+ |+|+.+++..+-
T Consensus 441 ~l~~fPe---~~~l~qL~~lDl--S~N~L~~~~l~~--------~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 441 QLLSFPE---LAQLPQLKVLDL--SCNNLSEVTLPE--------ALPSPNLKYLDLSGNT 487 (1081)
T ss_pred ceeechh---hhhcCcceEEec--ccchhhhhhhhh--------hCCCcccceeeccCCc
Confidence 3444442 223468889988 788887642111 223 688888884433
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.23 E-value=2.9e-11 Score=119.50 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=49.8
Q ss_pred CCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
|+.+| .+. .+|+.|++.+|+++.+|.. +++|++|++++|.++.+|.. ..+|++|+++.+.. ..++ .
T Consensus 213 LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L---~~Lp-~ 279 (788)
T PRK15387 213 LTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPL---THLP-A 279 (788)
T ss_pred CCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc----ccccceeeccCCch---hhhh-h
Confidence 45566 554 3677777777777777752 46677777777777777643 24666777766432 2222 1
Q ss_pred hcccccccceEEEeccCccc
Q 036143 81 ARSSDRLDTFVGYFSKLDDF 100 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~~ 100 (355)
-.++|+.|++..+.....
T Consensus 280 --lp~~L~~L~Ls~N~Lt~L 297 (788)
T PRK15387 280 --LPSGLCKLWIFGNQLTSL 297 (788)
T ss_pred --chhhcCEEECcCCccccc
Confidence 124566666655554443
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.13 E-value=6.1e-12 Score=121.92 Aligned_cols=102 Identities=17% Similarity=0.248 Sum_probs=79.6
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
.+.+..+|+.||+++|.+..+|..|+.+.+|+.|+++.|.+...|.++ +++.+|+++.+..+.. ...|.++..+++
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~-~~~~~l~~lnL~~n~l---~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSC-SNMRNLQYLNLKNNRL---QSLPASISELKN 115 (1081)
T ss_pred HhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhh-hhhhcchhheeccchh---hcCchhHHhhhc
Confidence 455566788999999988899988999999999999999888999888 8999999999886433 445558888999
Q ss_pred ccceEEEeccCccccccccccccccc
Q 036143 87 LDTFVGYFSKLDDFNTYVKSSDGQRS 112 (355)
Q Consensus 87 L~~L~l~~~~~~~~~~~~~~l~~L~~ 112 (355)
|+.|+++++.+...+.-+..++....
T Consensus 116 l~~LdlS~N~f~~~Pl~i~~lt~~~~ 141 (1081)
T KOG0618|consen 116 LQYLDLSFNHFGPIPLVIEVLTAEEE 141 (1081)
T ss_pred ccccccchhccCCCchhHHhhhHHHH
Confidence 99999888877665554544444333
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.08 E-value=1.3e-11 Score=97.47 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=90.9
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++++|.+.++.+...|-|+.|.++.+|..|..+.+|+.|++.+|+++++|.++ +.|+.|++|++.-+.. ...|.++
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl---~~lprgf 98 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRL---NILPRGF 98 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhh---hcCcccc
Confidence 34567777888999999999999999999999999999999999999999999 9999999999986432 3334499
Q ss_pred cccccccceEEEeccCcc--ccccccccccccccc
Q 036143 82 RSSDRLDTFVGYFSKLDD--FNTYVKSSDGQRSKH 114 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~ 114 (355)
|.++.|+.|++.+++... .+..+..++.|+.|.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 999999999999887644 445566667777766
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.02 E-value=1.2e-09 Score=108.27 Aligned_cols=223 Identities=18% Similarity=0.171 Sum_probs=132.5
Q ss_pred CCCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 1 RLERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 1 ~l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
+|+.+|.. +.+|++|++++|+++.+|.. ..+|++|++++|.+..+|... .+|+.|++.+|.. ..++ .
T Consensus 233 ~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp----~~L~~L~Ls~N~L---t~LP-~ 299 (788)
T PRK15387 233 NLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP----SGLCKLWIFGNQL---TSLP-V 299 (788)
T ss_pred cCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch----hhcCEEECcCCcc---cccc-c
Confidence 35667743 57899999999999999864 468899999999999888633 5677888887644 2333 2
Q ss_pred hcccccccceEEEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccc
Q 036143 81 ARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTI 160 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~ 160 (355)
.+++|++|+++.|.+...+... ..|+.|. +..+.+... +. + ...++.++++++.+...+
T Consensus 300 --~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~-------Ls~N~L~~L--P~-l--p~~Lq~LdLS~N~Ls~LP---- 358 (788)
T PRK15387 300 --LPPGLQELSVSDNQLASLPALP---SELCKLW-------AYNNQLTSL--PT-L--PSGLQELSVSDNQLASLP---- 358 (788)
T ss_pred --cccccceeECCCCccccCCCCc---ccccccc-------cccCccccc--cc-c--ccccceEecCCCccCCCC----
Confidence 2468999999877766543322 2344444 112222211 11 0 123455666666655432
Q ss_pred cCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCcee
Q 036143 161 VLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEI 239 (355)
Q Consensus 161 ~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i 239 (355)
..+.+++.| +.++ .+..++. ...+|+.|+++++ +++.+.. ..++|+.|+++++. +..+
T Consensus 359 ~lp~~L~~L~Ls~N--~L~~LP~------------l~~~L~~LdLs~N-~Lt~LP~-----l~s~L~~LdLS~N~-LssI 417 (788)
T PRK15387 359 TLPSELYKLWAYNN--RLTSLPA------------LPSGLKELIVSGN-RLTSLPV-----LPSELKELMVSGNR-LTSL 417 (788)
T ss_pred CCCcccceehhhcc--ccccCcc------------cccccceEEecCC-cccCCCC-----cccCCCEEEccCCc-CCCC
Confidence 234566666 6653 3333322 2346788888777 4554332 13567888887643 5455
Q ss_pred cccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCC
Q 036143 240 VEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCP 299 (355)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~ 299 (355)
+. .+.+|+.|++.++ +++.++. ....+++|+.|++. +++
T Consensus 418 P~-----------------l~~~L~~L~Ls~N-qLt~LP~--sl~~L~~L~~LdLs-~N~ 456 (788)
T PRK15387 418 PM-----------------LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLE-GNP 456 (788)
T ss_pred Cc-----------------chhhhhhhhhccC-cccccCh--HHhhccCCCeEECC-CCC
Confidence 42 2346677777665 4566654 23335577777776 554
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.88 E-value=1.6e-09 Score=107.70 Aligned_cols=230 Identities=17% Similarity=0.159 Sum_probs=134.1
Q ss_pred CCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
++.+| .+. .+|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+ . .+|+.|++++|.. ..++..
T Consensus 190 LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l-~--~~L~~L~Ls~N~L---~~LP~~ 259 (754)
T PRK15370 190 LTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL-P--DTIQEMELSINRI---TELPER 259 (754)
T ss_pred cCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh-h--ccccEEECcCCcc---CcCChh
Confidence 56778 564 589999999999999998775 48999999999999999866 4 4799999998754 233324
Q ss_pred hcccccccceEEEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccc
Q 036143 81 ARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTI 160 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~ 160 (355)
+. ++|+.|+++.+....++..+. ..|+.|.. ..+.+... +..+. ..+..+.+.++.+...+ .
T Consensus 260 l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~L-------s~N~Lt~L--P~~lp--~sL~~L~Ls~N~Lt~LP---~ 321 (754)
T PRK15370 260 LP--SALQSLDLFHNKISCLPENLP--EELRYLSV-------YDNSIRTL--PAHLP--SGITHLNVQSNSLTALP---E 321 (754)
T ss_pred Hh--CCCCEEECcCCccCccccccC--CCCcEEEC-------CCCccccC--cccch--hhHHHHHhcCCccccCC---c
Confidence 43 579999998777665554332 34555551 11112111 11111 11223334444433211 1
Q ss_pred cCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCcee
Q 036143 161 VLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEI 239 (355)
Q Consensus 161 ~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i 239 (355)
..+++|+.| +.++ .++.++. ...++|+.|++++| +++.+. .. + .++|+.|++++| .+..+
T Consensus 322 ~l~~sL~~L~Ls~N--~Lt~LP~-----------~l~~sL~~L~Ls~N-~L~~LP-~~-l--p~~L~~LdLs~N-~Lt~L 382 (754)
T PRK15370 322 TLPPGLKTLEAGEN--ALTSLPA-----------SLPPELQVLDVSKN-QITVLP-ET-L--PPTITTLDVSRN-ALTNL 382 (754)
T ss_pred cccccceeccccCC--ccccCCh-----------hhcCcccEEECCCC-CCCcCC-hh-h--cCCcCEEECCCC-cCCCC
Confidence 234577777 7665 2333222 22367888888888 455432 11 2 257888888875 34455
Q ss_pred cccCcchhhhhcccccccccCcccceeecccccccceecCCCce--ecCCCceEEEEc
Q 036143 240 VEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAV--LICNSLQEIQIT 295 (355)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~--l~~~~L~~L~i~ 295 (355)
+. .+ .+.|+.|++.++ ++..++..... ..++.+..+.+.
T Consensus 383 P~--------------~l--~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~ 423 (754)
T PRK15370 383 PE--------------NL--PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVE 423 (754)
T ss_pred CH--------------hH--HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEee
Confidence 43 11 135777777665 45555441111 113466666665
No 22
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=5.3e-10 Score=95.79 Aligned_cols=183 Identities=20% Similarity=0.111 Sum_probs=123.2
Q ss_pred ccceecCCCcccc--ccCcccccCcccceecccCccccc-ccchhhhcCCCcceeeecccCCccccchhHhhcccccccc
Q 036143 13 ALQCLDLEYTAIK--EVPEGMEMLENLVHLTIYSKMLIK-FPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDT 89 (355)
Q Consensus 13 ~L~~L~L~~~~~~--~lP~~i~~L~~L~~L~l~~~~~~~-lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 89 (355)
.|++|||+...++ .+-.-+..|.+|+.|.+.|+.+.+ +-..+ .+-.+|+.|+++.|+.++...+..-+.+++.|++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4889999988665 565556888999999999886654 44445 8888999999998877777666667888888888
Q ss_pred eEEEeccCcccc--ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCchhHH
Q 036143 90 FVGYFSKLDDFN--TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQ 167 (355)
Q Consensus 90 L~l~~~~~~~~~--~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~L~ 167 (355)
|+++|+....-. ..++. .-+.|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~h-------------------------------------------------------ise~l~ 289 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAH-------------------------------------------------------ISETLT 289 (419)
T ss_pred cCchHhhccchhhhHHHhh-------------------------------------------------------hchhhh
Confidence 888877653211 00111 011122
Q ss_pred HH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCc-eecccCcc
Q 036143 168 GL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNE-EIVEVNDE 245 (355)
Q Consensus 168 ~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~-~i~~~~~~ 245 (355)
+| +.|+ --.-...++..++ ..+|+|.+|++++|--++. ..+..+-.++.|++|+++.|..+. +.+.
T Consensus 290 ~LNlsG~-rrnl~~sh~~tL~------~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~---- 357 (419)
T KOG2120|consen 290 QLNLSGY-RRNLQKSHLSTLV------RRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLL---- 357 (419)
T ss_pred hhhhhhh-HhhhhhhHHHHHH------HhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHHee----
Confidence 22 2222 1000011122222 4678999999999988887 455557789999999999998752 2222
Q ss_pred hhhhhcccccccccCcccceeecccccc
Q 036143 246 ETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 246 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
.+...|+|.+|++.+|..
T Consensus 358 ----------~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 358 ----------ELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ----------eeccCcceEEEEeccccC
Confidence 677899999999998854
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.73 E-value=6.1e-09 Score=84.97 Aligned_cols=107 Identities=21% Similarity=0.288 Sum_probs=29.7
Q ss_pred CCCCCccccccccceecCCCccccccCcccc-cCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGME-MLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~-~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
|+++|.+.+...++.|+|++|.|+.+. .++ .+.+|+.|++++|.++.++ ++ ..+++|++|+++++.. ..+...
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l-~~L~~L~~L~L~~N~I---~~i~~~ 82 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GL-PGLPRLKTLDLSNNRI---SSISEG 82 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS--S--T-T-----TT--EEE--SS------S-CHH
T ss_pred ccccccccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-Cc-cChhhhhhcccCCCCC---Cccccc
Confidence 456666677777888888888887773 565 5788888888888888875 45 7888888888887644 223213
Q ss_pred h-cccccccceEEEeccCcccc--ccccccccccccc
Q 036143 81 A-RSSDRLDTFVGYFSKLDDFN--TYVKSSDGQRSKH 114 (355)
Q Consensus 81 l-~~L~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~ 114 (355)
+ ..+++|++|++..+.+.++. ..++.++.|+.|.
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 4 35788888888766665432 2344455555554
No 24
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.72 E-value=9.7e-09 Score=68.87 Aligned_cols=59 Identities=29% Similarity=0.403 Sum_probs=53.1
Q ss_pred cccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccC
Q 036143 12 LALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGS 70 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~ 70 (355)
++|++|++++|.++.+|. .+..+++|++|++++|.+..+|.+.|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999999999986 46889999999999999999998877999999999998763
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.69 E-value=5.1e-09 Score=95.06 Aligned_cols=105 Identities=23% Similarity=0.198 Sum_probs=70.2
Q ss_pred ccccccccceecCCCccc-----cccCcccccCcccceecccCccccc-------ccchhhhcCCCcceeeecccCCccc
Q 036143 7 SLAKLLALQCLDLEYTAI-----KEVPEGMEMLENLVHLTIYSKMLIK-------FPAGILPKLCNLYSLRLNWGSETSR 74 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~-----~~lP~~i~~L~~L~~L~l~~~~~~~-------lP~~i~~~L~~L~~L~l~~~~~~~~ 74 (355)
-+..+.+|++|++++|.+ ..+++.+...++|++|+++++.+.. ++..+ .++++|+.|+++++... .
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~-~ 95 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL-TKGCGLQELDLSDNALG-P 95 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH-HhcCceeEEEccCCCCC-h
Confidence 344567799999999987 3467777788889999999886553 23344 78889999999886542 1
Q ss_pred cchhHhhccccc---ccceEEEeccCcc-----cccccccc-ccccccc
Q 036143 75 ETVQEAARSSDR---LDTFVGYFSKLDD-----FNTYVKSS-DGQRSKH 114 (355)
Q Consensus 75 ~~~~~~l~~L~~---L~~L~l~~~~~~~-----~~~~~~~l-~~L~~L~ 114 (355)
.... .+..+.+ |++|++..+...+ ....+... ..++.|.
T Consensus 96 ~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~ 143 (319)
T cd00116 96 DGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143 (319)
T ss_pred hHHH-HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE
Confidence 2223 5555555 9999998776542 11223344 5556555
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.61 E-value=1.7e-08 Score=82.36 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=48.6
Q ss_pred CCccc-cccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcc
Q 036143 5 VPSLA-KLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARS 83 (355)
Q Consensus 5 lP~i~-~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~ 83 (355)
|..++ .+.+|++|++++|.++.++ .+..+.+|++|++++|.+..++.++...+++|++|++.++....-..+. .+..
T Consensus 34 Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~-~L~~ 111 (175)
T PF14580_consen 34 IENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELE-PLSS 111 (175)
T ss_dssp --S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCG-GGGG
T ss_pred ccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhH-HHHc
Confidence 33444 4778889999999888885 6788899999999999888887665346889999999887654445555 7888
Q ss_pred cccccceEEEeccCcccc----ccccccccccccc
Q 036143 84 SDRLDTFVGYFSKLDDFN----TYVKSSDGQRSKH 114 (355)
Q Consensus 84 L~~L~~L~l~~~~~~~~~----~~~~~l~~L~~L~ 114 (355)
+++|+.|.+.++...+.. ..+..++.|+.|+
T Consensus 112 l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 112 LPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 888888888766554321 1244566666666
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.53 E-value=2e-08 Score=91.18 Aligned_cols=219 Identities=14% Similarity=0.089 Sum_probs=123.7
Q ss_pred ccccccccceecCCCccccc-------cCcccccCcccceecccCccccc-ccchhhhcCCC---cceeeecccCCcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKE-------VPEGMEMLENLVHLTIYSKMLIK-FPAGILPKLCN---LYSLRLNWGSETSRE 75 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~-------lP~~i~~L~~L~~L~l~~~~~~~-lP~~i~~~L~~---L~~L~l~~~~~~~~~ 75 (355)
.+...++|++|+++++.+.. ++..+..+.+|++|++++|.+.. .+..+ ..+.+ |++|++++|... ..
T Consensus 46 ~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~-~~ 123 (319)
T cd00116 46 ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLG-DR 123 (319)
T ss_pred HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccc-hH
Confidence 45567779999998886552 34566778899999999997764 33334 66655 999999986542 12
Q ss_pred chh---Hhhccc-ccccceEEEeccCcc-----ccccccccccccccccccccceeEeecCCCccc---cceecccCCcc
Q 036143 76 TVQ---EAARSS-DRLDTFVGYFSKLDD-----FNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRF---YSFLRTREANK 143 (355)
Q Consensus 76 ~~~---~~l~~L-~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~ 143 (355)
.++ ..+..+ ++|++|++..+.... +...+..+..++.|. +....+.+... ...+.....++
T Consensus 124 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~-------l~~n~l~~~~~~~l~~~l~~~~~L~ 196 (319)
T cd00116 124 GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN-------LANNGIGDAGIRALAEGLKANCNLE 196 (319)
T ss_pred HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEE-------CcCCCCchHHHHHHHHHHHhCCCCC
Confidence 222 156667 899999998777652 222344445566666 22222222111 11112223455
Q ss_pred EEEEeccCCccCCCccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhh--
Q 036143 144 SVCFYGCKICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAA-- 221 (355)
Q Consensus 144 ~~~L~~l~~~~~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~-- 221 (355)
.++++++.+.... ...+ .... ..+++|++|++++| .+++.........
T Consensus 197 ~L~L~~n~i~~~~---------~~~l-----------~~~~---------~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~ 246 (319)
T cd00116 197 VLDLNNNGLTDEG---------ASAL-----------AETL---------ASLKSLEVLNLGDN-NLTDAGAAALASALL 246 (319)
T ss_pred EEeccCCccChHH---------HHHH-----------HHHh---------cccCCCCEEecCCC-cCchHHHHHHHHHHh
Confidence 6666666544211 1111 0000 34578888888887 4554333222233
Q ss_pred --cCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccccc
Q 036143 222 --LQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPEL 274 (355)
Q Consensus 222 --L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 274 (355)
.+.|++|++.+|.....-. .+.......+++|++++++++..-
T Consensus 247 ~~~~~L~~L~l~~n~i~~~~~----------~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 247 SPNISLLTLSLSCNDITDDGA----------KDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred ccCCCceEEEccCCCCCcHHH----------HHHHHHHhcCCCccEEECCCCCCc
Confidence 3688888888765321000 001114445678888888876543
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.50 E-value=6.4e-09 Score=92.43 Aligned_cols=269 Identities=13% Similarity=0.102 Sum_probs=139.1
Q ss_pred cceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEE
Q 036143 14 LQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVG 92 (355)
Q Consensus 14 L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l 92 (355)
-..++|..|+|+.||+. |+.+.+||.||+++|.|+.|...-|..|.+|-.|.+..++......-. .++.|..|+.|.+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~-~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG-AFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh-HhhhHHHHHHHhc
Confidence 34567777888888655 577888888888888888775554488888777766653333333333 6777888888777
Q ss_pred EeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCchhHHHH--
Q 036143 93 YFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQGL-- 169 (355)
Q Consensus 93 ~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~L~~L-- 169 (355)
.-+...... ..+..++.+..|. ++...+..... .++..+..++.++...+.-...=..+++...
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLs-------lyDn~~q~i~~------~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLS-------LYDNKIQSICK------GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhc-------ccchhhhhhcc------ccccchhccchHhhhcCccccccccchhhhHHh
Confidence 544444433 3355666665555 22222221111 1111111111111111100000000011100
Q ss_pred ---Hhhcccccccccccccccc----cccccccCCCccEE--ee-ccCCCccccchHHHHhhcCCCCeEEEecCCCCcee
Q 036143 170 ---IMRDIEDVTSLNDVFSKEQ----GLVNAAKFSHLKAL--WF-SYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEI 239 (355)
Q Consensus 170 ---l~~~~~~~~~l~~~~~l~~----~~~~~~~~~~L~~L--~l-~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i 239 (355)
++- .+.+...+. .+.. ........-.++.+ .+ +.| ....+.|...+..|++|+.|++++ +.+..|
T Consensus 215 ~~~iet--sgarc~~p~-rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d-~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i 289 (498)
T KOG4237|consen 215 MNPIET--SGARCVSPY-RLYYKRINQEDARKFLCSLESLPSRLSSED-FPDSICPAKCFKKLPNLRKLNLSN-NKITRI 289 (498)
T ss_pred hchhhc--ccceecchH-HHHHHHhcccchhhhhhhHHhHHHhhcccc-CcCCcChHHHHhhcccceEeccCC-Cccchh
Confidence 000 000000000 0000 00000000111111 12 223 344455667788999999999986 445444
Q ss_pred cccCcchhhhhcccccccccCcccceeecccccccceecCCCceec-CCCceEEEEcCCCCccccc-cCCCCCCCCCCCC
Q 036143 240 VEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLI-CNSLQEIQITPSCPKLKRL-SLRLPPLDNGQPS 317 (355)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~-~~~L~~L~i~~~c~~L~~l-p~~~~~l~~~~~~ 317 (355)
-. ..+.....+++|.+.+. +++.+.. +++. ++.|++|.++ + .++..+ |..+..+.
T Consensus 290 ~~-------------~aFe~~a~l~eL~L~~N-~l~~v~~--~~f~~ls~L~tL~L~-~-N~it~~~~~aF~~~~----- 346 (498)
T KOG4237|consen 290 ED-------------GAFEGAAELQELYLTRN-KLEFVSS--GMFQGLSGLKTLSLY-D-NQITTVAPGAFQTLF----- 346 (498)
T ss_pred hh-------------hhhcchhhhhhhhcCcc-hHHHHHH--Hhhhccccceeeeec-C-CeeEEEecccccccc-----
Confidence 32 15567788999999876 5777766 5544 6799999996 4 556555 55556655
Q ss_pred CCCCeeEEEe
Q 036143 318 PSPALEVIKI 327 (355)
Q Consensus 318 ~~~~L~~l~~ 327 (355)
+|..|.+
T Consensus 347 ---~l~~l~l 353 (498)
T KOG4237|consen 347 ---SLSTLNL 353 (498)
T ss_pred ---eeeeeeh
Confidence 7777777
No 29
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.44 E-value=1.1e-07 Score=58.71 Aligned_cols=40 Identities=25% Similarity=0.372 Sum_probs=31.2
Q ss_pred cccceecCCCccccccCcccccCcccceecccCccccccc
Q 036143 12 LALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFP 51 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP 51 (355)
++|++|++++|+++.+|..+++|++|++|++++|.++++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4688888888888888877888888888888888877665
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.36 E-value=4.9e-08 Score=90.72 Aligned_cols=100 Identities=22% Similarity=0.291 Sum_probs=75.8
Q ss_pred CCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
++.+| .++++..|.+|||+.|++..+|..++.|+ |+.|-+++|+++.+|.++ +.+..|.+||.+.|.. ..++..
T Consensus 110 ~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~i-g~~~tl~~ld~s~nei---~slpsq 184 (722)
T KOG0532|consen 110 IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEI-GLLPTLAHLDVSKNEI---QSLPSQ 184 (722)
T ss_pred ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCccc-ccchhHHHhhhhhhhh---hhchHH
Confidence 56788 88889999999998888888888888885 888888888888888888 8888888888887654 333336
Q ss_pred hcccccccceEEEeccCccccccccc
Q 036143 81 ARSSDRLDTFVGYFSKLDDFNTYVKS 106 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~~~~~~~~ 106 (355)
++.+.+|+.|.+..+....+++++..
T Consensus 185 l~~l~slr~l~vrRn~l~~lp~El~~ 210 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNHLEDLPEELCS 210 (722)
T ss_pred hhhHHHHHHHHHhhhhhhhCCHHHhC
Confidence 77777777666665655555555543
No 31
>PLN03150 hypothetical protein; Provisional
Probab=98.18 E-value=2.8e-06 Score=83.95 Aligned_cols=84 Identities=14% Similarity=0.225 Sum_probs=64.3
Q ss_pred ccceecCCCcccc-ccCcccccCcccceecccCcccc-cccchhhhcCCCcceeeecccCCccccchhHhhcccccccce
Q 036143 13 ALQCLDLEYTAIK-EVPEGMEMLENLVHLTIYSKMLI-KFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTF 90 (355)
Q Consensus 13 ~L~~L~L~~~~~~-~lP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 90 (355)
.++.|+|++|.+. .+|..++.+.+|++|++++|.+. .+|..+ +.+++|+.|++++|.. .+..+. .+++|++|++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~l-sg~iP~-~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSF-NGSIPE-SLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCC-CCCCch-HHhcCCCCCEE
Confidence 4677888888776 77888888888888888888776 677777 8888888888887643 333334 78888888888
Q ss_pred EEEeccCcc
Q 036143 91 VGYFSKLDD 99 (355)
Q Consensus 91 ~l~~~~~~~ 99 (355)
++..+...+
T Consensus 496 ~Ls~N~l~g 504 (623)
T PLN03150 496 NLNGNSLSG 504 (623)
T ss_pred ECcCCcccc
Confidence 887776553
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.16 E-value=2e-07 Score=83.76 Aligned_cols=275 Identities=17% Similarity=0.132 Sum_probs=151.5
Q ss_pred ccceecCCCc-ccc--ccCcccccCcccceecccCc-cccccc-chhhhcCCCcceeeecccCCccccchhHhhcccccc
Q 036143 13 ALQCLDLEYT-AIK--EVPEGMEMLENLVHLTIYSK-MLIKFP-AGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRL 87 (355)
Q Consensus 13 ~L~~L~L~~~-~~~--~lP~~i~~L~~L~~L~l~~~-~~~~lP-~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 87 (355)
.|+.|.++|+ .+. .+-....+++++++|++.+| .++.-. .++-....+|++|++-.|...+...+..-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5788888888 333 34444467888999988888 333211 112256788888888887666666666455568889
Q ss_pred cceEEEeccCcc---ccccccccccccccccccccceeEeecCCCccccc--ee---c-ccCCccEEEEeccCCccCCC-
Q 036143 88 DTFVGYFSKLDD---FNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYS--FL---R-TREANKSVCFYGCKICEREG- 157 (355)
Q Consensus 88 ~~L~l~~~~~~~---~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~--~l---~-~~~~~~~~~L~~l~~~~~~~- 157 (355)
.+++++|+.... ..........++.+. ..||.... .+ . ........++..|..-.+..
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~------------~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~ 286 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLS------------LKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL 286 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhh------------hcccccccHHHHHHHhccChHhhccchhhhccccchHH
Confidence 999888765321 111222333333332 11222110 00 0 00011122233332211111
Q ss_pred ccc-cCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCC
Q 036143 158 VTI-VLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNR 235 (355)
Q Consensus 158 ~~~-~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~ 235 (355)
+.+ ..+..++.+ ..+| .++ ++.. .|......++|+.|.+..|.++++......-.+.+.|+.+++.+|..
T Consensus 287 ~~i~~~c~~lq~l~~s~~-t~~---~d~~----l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSC-TDI---TDEV----LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred HHHhhhhhHhhhhcccCC-CCC---chHH----HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence 111 224456666 6666 332 2211 22222467889999999998877754444345678888888887765
Q ss_pred CceecccCcchhhhhcccccccccCcccceeeccccccccee--cC-CCceecCCCceEEEEcCCCCccccccCCCCCCC
Q 036143 236 NEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSV--CS-DNAVLICNSLQEIQITPSCPKLKRLSLRLPPLD 312 (355)
Q Consensus 236 l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i--~~-~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~ 312 (355)
..+-. +..-..++|.|+.|.++.|.....- .. ..+......|+.+.++ +||...+-- ++++
T Consensus 359 ~~d~t------------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~-n~p~i~d~~--Le~l- 422 (483)
T KOG4341|consen 359 ITDGT------------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELD-NCPLITDAT--LEHL- 422 (483)
T ss_pred ehhhh------------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeec-CCCCchHHH--HHHH-
Confidence 43321 1114457889999999988655432 11 1123335678888899 998876532 1222
Q ss_pred CCCCCCCCCeeEEEe
Q 036143 313 NGQPSPSPALEVIKI 327 (355)
Q Consensus 313 ~~~~~~~~~L~~l~~ 327 (355)
...++|+.|++
T Consensus 423 ----~~c~~Leri~l 433 (483)
T KOG4341|consen 423 ----SICRNLERIEL 433 (483)
T ss_pred ----hhCcccceeee
Confidence 12347888776
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.16 E-value=1.4e-06 Score=58.23 Aligned_cols=60 Identities=20% Similarity=0.145 Sum_probs=50.3
Q ss_pred cccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEecc
Q 036143 35 ENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFSK 96 (355)
Q Consensus 35 ~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 96 (355)
++|++|++++|.+..+|.+.|..+++|++|+++++.. ...... .+..+++|++|++.++.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l-~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL-TSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSE-SEEETT-TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc-CccCHH-HHcCCCCCCEEeCcCCc
Confidence 4799999999999999998889999999999997654 344444 78999999999997553
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=6.7e-07 Score=80.83 Aligned_cols=208 Identities=15% Similarity=0.120 Sum_probs=98.6
Q ss_pred cccccceecCCCccccccCc--ccccCcccceecccCcccccc--cchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 10 KLLALQCLDLEYTAIKEVPE--GMEMLENLVHLTIYSKMLIKF--PAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 10 ~l~~L~~L~L~~~~~~~lP~--~i~~L~~L~~L~l~~~~~~~l--P~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
+++.||...|.++.+...+. -...|++.+.||+++|-+... -..++..|++|+.|+++.+.......-. .-..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~-~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN-TTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-chhhhh
Confidence 46677777777776665553 456677777777777644432 1223466777777777764322111111 222455
Q ss_pred cccceEEEeccCcc--ccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCC-CccccC
Q 036143 86 RLDTFVGYFSKLDD--FNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICERE-GVTIVL 162 (355)
Q Consensus 86 ~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~-~~~~~~ 162 (355)
+|+.|.+..|+... ...-+...+.+..|.+..|- .+....... .....++.++|++..+-..+ ...+..
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~------~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE------IILIKATST--KILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc------ccceecchh--hhhhHHhhccccCCccccccccccccc
Confidence 66666666565531 11223344555555521110 000000000 01223344444444332211 111233
Q ss_pred chhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEe
Q 036143 163 PKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQ 231 (355)
Q Consensus 163 ~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~ 231 (355)
++.|..| ++.+ ++.++..++. + ..--...|++|++|.+..+ +++++.....+..+++|+.|.+.
T Consensus 270 l~~L~~Lnls~t--gi~si~~~d~-~-s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 270 LPGLNQLNLSST--GIASIAEPDV-E-SLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred ccchhhhhcccc--CcchhcCCCc-c-chhhhcccccceeeecccC-ccccccccchhhccchhhhhhcc
Confidence 4556655 5553 3333322111 0 0001146888888888877 44444444445556666766654
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.08 E-value=3.5e-06 Score=79.00 Aligned_cols=104 Identities=20% Similarity=0.295 Sum_probs=81.8
Q ss_pred ccccccccceecCCCccccccCcccccCc-ccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLE-NLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~-~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
.+..+..++.|++.++.+.++|...+.+. +|+.|++++|.+..+|..+ +.+++|+.|++.++.. ..++...+.++
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l~~N~l---~~l~~~~~~~~ 186 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDL---SDLPKLLSNLS 186 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh-hccccccccccCCchh---hhhhhhhhhhh
Confidence 55566788999999999999998888885 9999999999999998887 9999999999998755 44442445888
Q ss_pred cccceEEEeccCccccccccccccccccc
Q 036143 86 RLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 86 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
+|+.|.+..+.....+..++....|..+.
T Consensus 187 ~L~~L~ls~N~i~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 187 NLNNLDLSGNKISDLPPEIELLSALEELD 215 (394)
T ss_pred hhhheeccCCccccCchhhhhhhhhhhhh
Confidence 99999998887777665554555566655
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=4.4e-07 Score=81.99 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=53.0
Q ss_pred ccCcccccCcccceecccCcccccccc-hhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEeccCcccc
Q 036143 26 EVPEGMEMLENLVHLTIYSKMLIKFPA-GILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFSKLDDFN 101 (355)
Q Consensus 26 ~lP~~i~~L~~L~~L~l~~~~~~~lP~-~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 101 (355)
++-+-=.++.+|+...++++.+...+. +....+++++.||++.+-...-..+-.-+..|++|+.|+++.+....+.
T Consensus 112 ki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 112 KIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred HHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc
Confidence 333334678999999999998887774 3348899999999997533222333325667889999998877665443
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.01 E-value=5.8e-06 Score=77.51 Aligned_cols=109 Identities=18% Similarity=0.215 Sum_probs=85.2
Q ss_pred CCCCC-cccccc-ccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLL-ALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~-~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
+.++| ....+. +|+.|++++|.+..+|..++.+++|+.|++++|.+..+|... +.+++|+.|+++++.. ..++.
T Consensus 128 i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~L~~L~ls~N~i---~~l~~ 203 (394)
T COG4886 128 ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-SNLSNLNNLDLSGNKI---SDLPP 203 (394)
T ss_pred cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhh-hhhhhhhheeccCCcc---ccCch
Confidence 56788 666664 999999999999999999999999999999999999999987 7999999999998654 45553
Q ss_pred hhcccccccceEEEeccCccccccccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
.+..+..|+++.+..+........+..+..+..+.
T Consensus 204 ~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhhhhhhhhhhhcCCcceecchhhhhcccccccc
Confidence 55677779999997664433333444444444443
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.99 E-value=2.4e-07 Score=86.22 Aligned_cols=109 Identities=19% Similarity=0.234 Sum_probs=93.5
Q ss_pred CCCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.++| .++.+..|+.+.|+.|.+..+|..++++..|.|||++.|.+..+|..+ ..--|+.|-++++.. ...+.
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l--C~lpLkvli~sNNkl---~~lp~ 160 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL--CDLPLKVLIVSNNKL---TSLPE 160 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh--hcCcceeEEEecCcc---ccCCc
Confidence 356789 999999999999999999999999999999999999999999999998 444588888887544 44455
Q ss_pred hhcccccccceEEEeccCccccccccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
+++-+..|.+|+++.|.....+..++.+..|+.|.
T Consensus 161 ~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred ccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHH
Confidence 89989999999999888888888888888887776
No 39
>PLN03150 hypothetical protein; Provisional
Probab=97.97 E-value=8.2e-06 Score=80.68 Aligned_cols=89 Identities=22% Similarity=0.256 Sum_probs=63.3
Q ss_pred CCC-ccccccccceecCCCcccc-ccCcccccCcccceecccCcccc-cccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 4 RVP-SLAKLLALQCLDLEYTAIK-EVPEGMEMLENLVHLTIYSKMLI-KFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 4 ~lP-~i~~l~~L~~L~L~~~~~~-~lP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
.+| +++++++|++|+|++|.+. .+|..++.+.+|++|++++|.+. .+|..+ ++|++|++|++++|.. .+..+. .
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L~Ls~N~l-~g~iP~-~ 509 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLNGNSL-SGRVPA-A 509 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCEEECcCCcc-cccCCh-H
Confidence 466 7888888888888888776 77888888888888888888776 577777 8888888888887543 333333 5
Q ss_pred hccc-ccccceEEEec
Q 036143 81 ARSS-DRLDTFVGYFS 95 (355)
Q Consensus 81 l~~L-~~L~~L~l~~~ 95 (355)
++.+ .++..+.+..+
T Consensus 510 l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 510 LGGRLLHRASFNFTDN 525 (623)
T ss_pred HhhccccCceEEecCC
Confidence 5543 34555555444
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.96 E-value=1.2e-06 Score=75.59 Aligned_cols=63 Identities=32% Similarity=0.294 Sum_probs=44.7
Q ss_pred ccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 194 AKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 194 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
..+.|.+.|.++++ .++. .+.++.|.+|+.|++.++ +++++-... .++.+|+|+++.+.+.|-
T Consensus 349 ~KLGNIKtL~La~N-~iE~---LSGL~KLYSLvnLDl~~N-~Ie~ldeV~------------~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQN-KIET---LSGLRKLYSLVNLDLSSN-QIEELDEVN------------HIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhcCEeeeehhhh-hHhh---hhhhHhhhhheecccccc-chhhHHHhc------------ccccccHHHHHhhcCCCc
Confidence 35678888888887 3443 344678889999999864 333332111 788999999999998864
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.3e-05 Score=49.43 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=30.9
Q ss_pred cccceecccCcccccccchhhhcCCCcceeeecccCC
Q 036143 35 ENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSE 71 (355)
Q Consensus 35 ~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~ 71 (355)
++|++|++++|.++.+|.++ ++|++|++|+++++..
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcccCchH-hCCCCCCEEEecCCCC
Confidence 47999999999999999988 9999999999998754
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.86 E-value=1.8e-06 Score=74.68 Aligned_cols=102 Identities=19% Similarity=0.157 Sum_probs=70.9
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
++.-+..+|+|+++.|.+..+- .+..|.+|+.||+++|.+.++-.-= .+|-|.++|.+..+.. ..+. ++++|-+
T Consensus 302 SvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh-~KLGNIKtL~La~N~i---E~LS-GL~KLYS 375 (490)
T KOG1259|consen 302 SVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWH-LKLGNIKTLKLAQNKI---ETLS-GLRKLYS 375 (490)
T ss_pred hhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhH-hhhcCEeeeehhhhhH---hhhh-hhHhhhh
Confidence 5555778899999999888774 4888889999999998777664422 5667777777776433 4455 6666777
Q ss_pred ccceEEEeccCcccc--ccccccccccccc
Q 036143 87 LDTFVGYFSKLDDFN--TYVKSSDGQRSKH 114 (355)
Q Consensus 87 L~~L~l~~~~~~~~~--~~~~~l~~L~~L~ 114 (355)
|..|++..+++.... ..+++++.|+.+.
T Consensus 376 LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 376 LVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred heeccccccchhhHHHhcccccccHHHHHh
Confidence 777777666665432 4566777666665
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=2.1e-06 Score=74.18 Aligned_cols=88 Identities=16% Similarity=0.015 Sum_probs=58.9
Q ss_pred CCCccEEeeccCCCccccchHHH-HhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccccc
Q 036143 196 FSHLKALWFSYCPNLQKLFSLQL-LAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPEL 274 (355)
Q Consensus 196 ~~~L~~L~l~~~~~l~~~~~~~~-l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 274 (355)
-++|+.|.+++|.+.-....... ...+|+|.+|++++|..+..-.. ..+..|+.|++|.++.|..+
T Consensus 285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~-------------~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF-------------QEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH-------------HHHHhcchheeeehhhhcCC
Confidence 35788899999864322222222 35689999999999988765432 15668999999999999754
Q ss_pred ce-ecCCCceecCCCceEEEEcCCCC
Q 036143 275 KS-VCSDNAVLICNSLQEIQITPSCP 299 (355)
Q Consensus 275 ~~-i~~~~~~l~~~~L~~L~i~~~c~ 299 (355)
.. .....+. .|+|.+|++. +|-
T Consensus 352 ~p~~~~~l~s--~psl~yLdv~-g~v 374 (419)
T KOG2120|consen 352 IPETLLELNS--KPSLVYLDVF-GCV 374 (419)
T ss_pred ChHHeeeecc--CcceEEEEec-ccc
Confidence 21 1110022 4699999998 773
No 44
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.71 E-value=6.1e-07 Score=80.67 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=61.8
Q ss_pred ccccccceecCCCc-cccc-cCccc-ccCcccceecccCc-ccccccch-hhhcCCCcceeeecccCCccccchhHhhcc
Q 036143 9 AKLLALQCLDLEYT-AIKE-VPEGM-EMLENLVHLTIYSK-MLIKFPAG-ILPKLCNLYSLRLNWGSETSRETVQEAARS 83 (355)
Q Consensus 9 ~~l~~L~~L~L~~~-~~~~-lP~~i-~~L~~L~~L~l~~~-~~~~lP~~-i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~ 83 (355)
.+++++++|.+.+| .++. .--++ ..+.+|++|++..| .++...-. +....++|.++++++|....+..+......
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 45889999999999 5552 12223 57899999999997 55543332 336789999999999987777667656666
Q ss_pred cccccceEEEe
Q 036143 84 SDRLDTFVGYF 94 (355)
Q Consensus 84 L~~L~~L~l~~ 94 (355)
+++++.+...+
T Consensus 241 ~~~l~~~~~kG 251 (483)
T KOG4341|consen 241 CKELEKLSLKG 251 (483)
T ss_pred chhhhhhhhcc
Confidence 77777775553
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=2.9e-05 Score=67.25 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=59.5
Q ss_pred ccccccccceecCCCccccccCc--cc-ccCcccceecccCccccccc--chhhhcCCCcceeeecccCCccccchhHhh
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPE--GM-EMLENLVHLTIYSKMLIKFP--AGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~--~i-~~L~~L~~L~l~~~~~~~lP--~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
.+...+.++.|-+.++.|...-+ .+ ..+++.+.+|+.+|.+..-. ..|+.+|++|++|+++.+... ..+. .+
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~--s~I~-~l 116 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS--SDIK-SL 116 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC--Cccc-cC
Confidence 34445555677777776654322 23 45678888888888766421 223478888888888865332 1111 22
Q ss_pred -cccccccceEEEeccCc--cccccccccccccccc
Q 036143 82 -RSSDRLDTFVGYFSKLD--DFNTYVKSSDGQRSKH 114 (355)
Q Consensus 82 -~~L~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~ 114 (355)
..+.+|+.+-+.+.... .....+..++.++.++
T Consensus 117 p~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 117 PLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH 152 (418)
T ss_pred cccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence 23457777776544331 1223345555556555
No 46
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.47 E-value=5.7e-05 Score=74.99 Aligned_cols=83 Identities=19% Similarity=0.145 Sum_probs=56.4
Q ss_pred ccccceecCCCcccc--ccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccccc
Q 036143 11 LLALQCLDLEYTAIK--EVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLD 88 (355)
Q Consensus 11 l~~L~~L~L~~~~~~--~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 88 (355)
|++||.|.++|-.+. ++-.-..+++||+.||++++++..+ .++ ++|++|++|.+++........+. ++.+|++|+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~LknLq~L~mrnLe~e~~~~l~-~LF~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKNLQVLSMRNLEFESYQDLI-DLFNLKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hccccHHHHhccCCCCCchhhHH-HHhcccCCC
Confidence 556666666664332 2222234677888888888888877 666 88888888888876554445556 788888888
Q ss_pred ceEEEecc
Q 036143 89 TFVGYFSK 96 (355)
Q Consensus 89 ~L~l~~~~ 96 (355)
.|+++...
T Consensus 224 vLDIS~~~ 231 (699)
T KOG3665|consen 224 VLDISRDK 231 (699)
T ss_pred eeeccccc
Confidence 88887544
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.45 E-value=0.00024 Score=65.47 Aligned_cols=86 Identities=20% Similarity=0.339 Sum_probs=55.8
Q ss_pred CCCccEEeeccCCCccccchHHHHhhc-CCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccccc
Q 036143 196 FSHLKALWFSYCPNLQKLFSLQLLAAL-QNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPEL 274 (355)
Q Consensus 196 ~~~L~~L~l~~~~~l~~~~~~~~l~~L-~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 274 (355)
+.+++.|++++| .++.++ .+ ++|+.|.+.+|..+..++. .+ .++|++|.+.+|..+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP------~LP~sLtsL~Lsnc~nLtsLP~--------------~L--P~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP------VLPNELTEITIENCNNLTTLPG--------------SI--PEGLEKLTVCHCPEI 107 (426)
T ss_pred hcCCCEEEeCCC-CCcccC------CCCCCCcEEEccCCCCcccCCc--------------hh--hhhhhheEccCcccc
Confidence 366778888888 666643 23 3578888888888766653 21 247888888888766
Q ss_pred ceecCCCceecCCCceEEEEcC-CCCccccccCCCCCCC
Q 036143 275 KSVCSDNAVLICNSLQEIQITP-SCPKLKRLSLRLPPLD 312 (355)
Q Consensus 275 ~~i~~~~~~l~~~~L~~L~i~~-~c~~L~~lp~~~~~l~ 312 (355)
..++. +|++|.+.. .|..++.+|.++..|.
T Consensus 108 ~sLP~--------sLe~L~L~~n~~~~L~~LPssLk~L~ 138 (426)
T PRK15386 108 SGLPE--------SVRSLEIKGSATDSIKNVPNGLTSLS 138 (426)
T ss_pred ccccc--------ccceEEeCCCCCcccccCcchHhhee
Confidence 55543 566666631 3455677777776663
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.32 E-value=2.3e-05 Score=60.17 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=67.7
Q ss_pred ccceecCCCccccccCcc---cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccc
Q 036143 13 ALQCLDLEYTAIKEVPEG---MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDT 89 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP~~---i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 89 (355)
.+-.+||++|.+-++++. +....+|...++++|.++.+|..+-.+.+.+.++++.++.. ..+|.++..++.|+.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei---sdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI---SDVPEELAAMPALRS 104 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhh---hhchHHHhhhHHhhh
Confidence 455677888866555444 35566777778888888888887644555778888876543 445557888888888
Q ss_pred eEEEeccCccccccccccccccccc
Q 036143 90 FVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 90 L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
+++.++.+...++.+..+.++..|.
T Consensus 105 lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 105 LNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred cccccCccccchHHHHHHHhHHHhc
Confidence 8887777776666665566655555
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.25 E-value=0.00081 Score=62.04 Aligned_cols=54 Identities=22% Similarity=0.372 Sum_probs=28.3
Q ss_pred cEEEEeccCCccCCCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccc
Q 036143 143 KSVCFYGCKICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQK 212 (355)
Q Consensus 143 ~~~~L~~l~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~ 212 (355)
..+.+++|.+..-+ .+|++|+.| +.+| ..++.+++. ..++|++|.+++|.++..
T Consensus 55 ~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc-~nLtsLP~~-----------LP~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 55 GRLYIKDCDIESLP----VLPNELTEITIENC-NNLTTLPGS-----------IPEGLEKLTVCHCPEISG 109 (426)
T ss_pred CEEEeCCCCCcccC----CCCCCCcEEEccCC-CCcccCCch-----------hhhhhhheEccCcccccc
Confidence 34444444443322 345566666 6666 554444331 224677777777765543
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.15 E-value=2.8e-05 Score=59.75 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=69.2
Q ss_pred cccccccceecCCCccccccCcccccC-cccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 8 LAKLLALQCLDLEYTAIKEVPEGMEML-ENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~~~~lP~~i~~L-~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
+....+|...++++|.++.+|+.+... +-++.|++++|.+.++|.++ ..++.|+.++++++... ..+. .+..|.+
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lNl~~N~l~--~~p~-vi~~L~~ 124 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLNLRFNPLN--AEPR-VIAPLIK 124 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhcccccCccc--cchH-HHHHHHh
Confidence 345567888899999999999998655 58999999999999999998 99999999999987553 3333 6666888
Q ss_pred ccceEEEeccC
Q 036143 87 LDTFVGYFSKL 97 (355)
Q Consensus 87 L~~L~l~~~~~ 97 (355)
|-.|+...+..
T Consensus 125 l~~Lds~~na~ 135 (177)
T KOG4579|consen 125 LDMLDSPENAR 135 (177)
T ss_pred HHHhcCCCCcc
Confidence 87777654443
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.12 E-value=0.00013 Score=68.84 Aligned_cols=86 Identities=23% Similarity=0.261 Sum_probs=53.0
Q ss_pred cccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccc
Q 036143 8 LAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRL 87 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 87 (355)
++.+++|.+|++.+|.+.++...+..+++|++|++++|.+..+.. + ..++.|+.|++.++.. ..+. .+..+++|
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l-~~l~~L~~L~l~~N~i---~~~~-~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-L-STLTLLKELNLSGNLI---SDIS-GLESLKSL 164 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-h-hhccchhhheeccCcc---hhcc-CCccchhh
Confidence 556666777777777666665446667777777777776666643 2 5666677777666544 3334 45556666
Q ss_pred cceEEEeccCcc
Q 036143 88 DTFVGYFSKLDD 99 (355)
Q Consensus 88 ~~L~l~~~~~~~ 99 (355)
+.+++.++.+..
T Consensus 165 ~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 165 KLLDLSYNRIVD 176 (414)
T ss_pred hcccCCcchhhh
Confidence 666665555443
No 52
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.01 E-value=0.00023 Score=36.64 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=10.8
Q ss_pred ccceecCCCccccccCcccc
Q 036143 13 ALQCLDLEYTAIKEVPEGME 32 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP~~i~ 32 (355)
+|++||+++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35555555555555555444
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.00 E-value=3e-05 Score=74.67 Aligned_cols=87 Identities=23% Similarity=0.218 Sum_probs=54.1
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
++.=+..|+.|||+.|++.+.- .+..|.+|++||++.|.+..+|.---.... |+.|.++++.. ..+. +|.+|++
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l---~tL~-gie~Lks 255 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNAL---TTLR-GIENLKS 255 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHH---Hhhh-hHHhhhh
Confidence 3444667788888888777664 677788888888888877776652102222 66666665433 3344 5666666
Q ss_pred ccceEEEeccCcc
Q 036143 87 LDTFVGYFSKLDD 99 (355)
Q Consensus 87 L~~L~l~~~~~~~ 99 (355)
|+.|++++|-..+
T Consensus 256 L~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSE 268 (1096)
T ss_pred hhccchhHhhhhc
Confidence 6666666554433
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.85 E-value=0.0003 Score=66.39 Aligned_cols=90 Identities=21% Similarity=0.323 Sum_probs=73.1
Q ss_pred CCCCCc-cccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 2 LERVPS-LAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 2 l~~lP~-i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
|+.+.. +..+.+|++|++++|.|+.+. .+..+..|+.|++.+|.+..++. +..+++|+.+++.++.. ..+. .
T Consensus 107 i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i---~~ie-~ 179 (414)
T KOG0531|consen 107 IEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYNRI---VDIE-N 179 (414)
T ss_pred hhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC--CccchhhhcccCCcchh---hhhh-h
Confidence 556665 888999999999999999885 68888999999999999998865 36799999999998654 4444 4
Q ss_pred --hcccccccceEEEeccCc
Q 036143 81 --ARSSDRLDTFVGYFSKLD 98 (355)
Q Consensus 81 --l~~L~~L~~L~l~~~~~~ 98 (355)
+..+.+|+.+.+..+...
T Consensus 180 ~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 180 DELSELISLEELDLGGNSIR 199 (414)
T ss_pred hhhhhccchHHHhccCCchh
Confidence 578888888888655543
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.83 E-value=0.00074 Score=67.20 Aligned_cols=88 Identities=17% Similarity=0.228 Sum_probs=65.2
Q ss_pred ccccccceecCCCccccccCcccccCcccceecccCccccccc--chhhhcCCCcceeeecccCCccccc-hhH---hhc
Q 036143 9 AKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFP--AGILPKLCNLYSLRLNWGSETSRET-VQE---AAR 82 (355)
Q Consensus 9 ~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP--~~i~~~L~~L~~L~l~~~~~~~~~~-~~~---~l~ 82 (355)
.++++|+.||+++++++.+ .++++|+|||.|.+.+-.+..-. .++ -+|++|++||++......... +.. .-.
T Consensus 170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~ 247 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL-FNLKKLRVLDISRDKNNDDTKIIEQYLECGM 247 (699)
T ss_pred hccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH-hcccCCCeeeccccccccchHHHHHHHHhcc
Confidence 3689999999999999988 78999999999999986666432 233 789999999999754332221 111 122
Q ss_pred ccccccceEEEeccCc
Q 036143 83 SSDRLDTFVGYFSKLD 98 (355)
Q Consensus 83 ~L~~L~~L~l~~~~~~ 98 (355)
.|++||.|+++++...
T Consensus 248 ~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 248 VLPELRFLDCSGTDIN 263 (699)
T ss_pred cCccccEEecCCcchh
Confidence 3889999998866543
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.72 E-value=0.00014 Score=70.39 Aligned_cols=89 Identities=25% Similarity=0.285 Sum_probs=70.8
Q ss_pred ccccccccceecCCCccccccCccc-ccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGM-EMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i-~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
.+..|.+|++|||++|.+..+|.-= ..+. |+.|.+++|.++.+ .+| .+|.+|+.||++++-...-..+. -++.|.
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gi-e~LksL~~LDlsyNll~~hseL~-pLwsLs 279 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGI-ENLKSLYGLDLSYNLLSEHSELE-PLWSLS 279 (1096)
T ss_pred HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhH-HhhhhhhccchhHhhhhcchhhh-HHHHHH
Confidence 4556889999999999998887532 3343 99999999998887 456 99999999999997554445555 788999
Q ss_pred cccceEEEeccCcc
Q 036143 86 RLDTFVGYFSKLDD 99 (355)
Q Consensus 86 ~L~~L~l~~~~~~~ 99 (355)
.|+.|++.+|....
T Consensus 280 ~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 280 SLIVLWLEGNPLCC 293 (1096)
T ss_pred HHHHHhhcCCcccc
Confidence 99999998776533
No 57
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.55 E-value=0.00094 Score=34.28 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=18.2
Q ss_pred ccceecccCcccccccchhhhcC
Q 036143 36 NLVHLTIYSKMLIKFPAGILPKL 58 (355)
Q Consensus 36 ~L~~L~l~~~~~~~lP~~i~~~L 58 (355)
+|++||+++|.++.+|.++ ++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~-~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSF-SNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTT-TT-
T ss_pred CccEEECCCCcCEeCChhh-cCC
Confidence 5899999999999999885 654
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.44 E-value=0.0041 Score=51.22 Aligned_cols=100 Identities=14% Similarity=0.170 Sum_probs=67.0
Q ss_pred ccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEE
Q 036143 13 ALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVG 92 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l 92 (355)
+.-.+||++|++..++ .+..+..|.+|.+.+|.+..+...+-..+++|.+|.+.++....-..+. .+..+++|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-PLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-hhccCCccceeee
Confidence 4457888888777664 5667888888888888888887777345567888888876554334444 5677778888887
Q ss_pred EeccCcc---cc-ccccccccccccc
Q 036143 93 YFSKLDD---FN-TYVKSSDGQRSKH 114 (355)
Q Consensus 93 ~~~~~~~---~~-~~~~~l~~L~~L~ 114 (355)
-++.... .. -.+..++.++.|+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LD 146 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLD 146 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEee
Confidence 6555432 11 1244555555555
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.32 E-value=0.0033 Score=53.77 Aligned_cols=86 Identities=14% Similarity=0.164 Sum_probs=53.9
Q ss_pred cccccceecCCCccccccCcccccCcccceecccCc--ccc-cccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 10 KLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSK--MLI-KFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 10 ~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~--~~~-~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
.+..|+.|++.++.++.+- .+..|++|++|+++.| .+. .++.-+ .++++|++++++.+.......++ .+..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~-pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLR-PLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccc-hhhhhcc
Confidence 4566777777777555442 3446778888888887 332 344444 66688888888876554344444 5666667
Q ss_pred ccceEEEeccCc
Q 036143 87 LDTFVGYFSKLD 98 (355)
Q Consensus 87 L~~L~l~~~~~~ 98 (355)
|..|.++.+...
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 777777655443
No 60
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.19 E-value=0.0009 Score=59.38 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=60.0
Q ss_pred cccccccceecCCCcccc-----ccCcccccCcccceecccCcc----cccccchh------hhcCCCcceeeecccCCc
Q 036143 8 LAKLLALQCLDLEYTAIK-----EVPEGMEMLENLVHLTIYSKM----LIKFPAGI------LPKLCNLYSLRLNWGSET 72 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~~~-----~lP~~i~~L~~L~~L~l~~~~----~~~lP~~i------~~~L~~L~~L~l~~~~~~ 72 (355)
+-....+..++|+||.+. .+.+.+.+.++|+..++++-. ..++|..+ +-..++|++||++++- +
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA-~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA-F 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc-c
Confidence 345677889999999664 355566777888888888741 22455543 2445689999999853 2
Q ss_pred cccchh---HhhcccccccceEEEeccCc
Q 036143 73 SRETVQ---EAARSSDRLDTFVGYFSKLD 98 (355)
Q Consensus 73 ~~~~~~---~~l~~L~~L~~L~l~~~~~~ 98 (355)
+...++ .-|..++.|++|++..++..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 333333 25667888999998766653
No 61
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.85 E-value=0.0031 Score=56.09 Aligned_cols=218 Identities=18% Similarity=0.167 Sum_probs=115.1
Q ss_pred ccccccceecCCCc---cc-cccCccc-------ccCcccceecccCcccc-cccchh---hhcCCCcceeeecccCCcc
Q 036143 9 AKLLALQCLDLEYT---AI-KEVPEGM-------EMLENLVHLTIYSKMLI-KFPAGI---LPKLCNLYSLRLNWGSETS 73 (355)
Q Consensus 9 ~~l~~L~~L~L~~~---~~-~~lP~~i-------~~L~~L~~L~l~~~~~~-~lP~~i---~~~L~~L~~L~l~~~~~~~ 73 (355)
.+-++||.-++++- .. .++|+.+ -.+++|++||||.|.+. ..+..+ +...+.|++|.+.+|+...
T Consensus 55 ~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~ 134 (382)
T KOG1909|consen 55 ASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGP 134 (382)
T ss_pred hhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCCh
Confidence 34557777777654 22 2555554 35668999999998433 233332 5788889999998875421
Q ss_pred --ccc---------hhHhhcccccccceEEEeccCcccc-----ccccccccccccccccccceeEeecCCCcc---ccc
Q 036143 74 --RET---------VQEAARSSDRLDTFVGYFSKLDDFN-----TYVKSSDGQRSKHFHFQVSTVYNGSAANTR---FYS 134 (355)
Q Consensus 74 --~~~---------~~~~l~~L~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~---~~~ 134 (355)
+.. ....++.-++||.+.+..|...+.. ..++..+.+..++ +..+.+..-. ...
T Consensus 135 ~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr-------~~qN~I~~eG~~al~e 207 (382)
T KOG1909|consen 135 EAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVR-------LSQNGIRPEGVTALAE 207 (382)
T ss_pred hHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEE-------EecccccCchhHHHHH
Confidence 111 1113555668888888766654422 2344455566655 3333333221 112
Q ss_pred eecccCCccEEEEeccCCccCCCccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccc
Q 036143 135 FLRTREANKSVCFYGCKICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLF 214 (355)
Q Consensus 135 ~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 214 (355)
.+...+.++.++|+++.++..+... +.. .+ ..+++|+.|++++| .++.-.
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~----------Lak---------aL----------~s~~~L~El~l~dc-ll~~~G 257 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVA----------LAK---------AL----------SSWPHLRELNLGDC-LLENEG 257 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHH----------HHH---------Hh----------cccchheeeccccc-cccccc
Confidence 2233455666666666554322111 110 01 24556777777777 444322
Q ss_pred hHH----HHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 215 SLQ----LLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 215 ~~~----~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
... .-...|+|+.|.+.++....+-.. .........|.|+.|.|.+|..
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~----------~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNEITRDAAL----------ALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcchhHHHHHH----------HHHHHHhcchhhHHhcCCcccc
Confidence 211 112367777777776553322110 0111444577788888877753
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.85 E-value=0.0054 Score=58.80 Aligned_cols=103 Identities=19% Similarity=0.102 Sum_probs=58.6
Q ss_pred ccccceecCCCc-cccc--cCcccccCcccceecccCc--cccccc---chhhhcCCCcceeeecccCCccccchhHhhc
Q 036143 11 LLALQCLDLEYT-AIKE--VPEGMEMLENLVHLTIYSK--MLIKFP---AGILPKLCNLYSLRLNWGSETSRETVQEAAR 82 (355)
Q Consensus 11 l~~L~~L~L~~~-~~~~--lP~~i~~L~~L~~L~l~~~--~~~~lP---~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~ 82 (355)
+.+|+.|.+.++ .+.. +-.....+.+|+.|+++++ .....+ ..+...+.+|+.|+++++...+...+. .+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~-~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS-ALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH-HHH
Confidence 567777777777 5554 3344567788888888763 222222 112255677888888877655556666 444
Q ss_pred c-cccccceEEEecc-Ccc--ccccccccccccccc
Q 036143 83 S-SDRLDTFVGYFSK-LDD--FNTYVKSSDGQRSKH 114 (355)
Q Consensus 83 ~-L~~L~~L~l~~~~-~~~--~~~~~~~l~~L~~L~ 114 (355)
. +++|++|.+..+. ..+ +......++.|+.|.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~ 301 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELD 301 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEe
Confidence 3 6777777754333 111 222233445566555
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.72 E-value=0.0071 Score=51.74 Aligned_cols=86 Identities=17% Similarity=0.129 Sum_probs=49.6
Q ss_pred cCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEeccCccc--cccc
Q 036143 27 VPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFSKLDDF--NTYV 104 (355)
Q Consensus 27 lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~--~~~~ 104 (355)
+....-...+|++|.+.++.++.+-. + -+|++|+.|.++.+.......++.-..++++|+++.++.|.+... ...+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~-~-P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTN-F-PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeeccc-C-CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 44444556777777777776665533 2 577888888888763322233332344458888888887776541 1223
Q ss_pred cccccccccc
Q 036143 105 KSSDGQRSKH 114 (355)
Q Consensus 105 ~~l~~L~~L~ 114 (355)
+.+.+|..|.
T Consensus 113 ~~l~nL~~Ld 122 (260)
T KOG2739|consen 113 KELENLKSLD 122 (260)
T ss_pred hhhcchhhhh
Confidence 3444444444
No 64
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.49 E-value=0.0061 Score=29.01 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=5.8
Q ss_pred ccceecCCCccccccC
Q 036143 13 ALQCLDLEYTAIKEVP 28 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP 28 (355)
+|++|++++|.++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3455555555444443
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.25 E-value=0.015 Score=47.99 Aligned_cols=91 Identities=19% Similarity=0.127 Sum_probs=67.2
Q ss_pred CCCCCccccccccceecCCCccccccCcccc-cCcccceecccCcccccccchh-hhcCCCcceeeecccCCcc--ccch
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGME-MLENLVHLTIYSKMLIKFPAGI-LPKLCNLYSLRLNWGSETS--RETV 77 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~-~L~~L~~L~l~~~~~~~lP~~i-~~~L~~L~~L~l~~~~~~~--~~~~ 77 (355)
+..++.+..+..|.+|.+.+|.|+++-..++ .+++|..|.+.+|.+..+-+-- +..++.|++|.+-++.... .-..
T Consensus 54 l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~ 133 (233)
T KOG1644|consen 54 LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRL 133 (233)
T ss_pred hhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCcee
Confidence 3455667778999999999999999966664 5678999999999877663210 2678889999887754321 1222
Q ss_pred hHhhcccccccceEEE
Q 036143 78 QEAARSSDRLDTFVGY 93 (355)
Q Consensus 78 ~~~l~~L~~L~~L~l~ 93 (355)
- .+..+++|+.|++.
T Consensus 134 y-vl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 134 Y-VLYKLPSLRTLDFQ 148 (233)
T ss_pred E-EEEecCcceEeehh
Confidence 2 68899999999985
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.23 E-value=0.0093 Score=28.37 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=10.7
Q ss_pred cccceecccCccccccc
Q 036143 35 ENLVHLTIYSKMLIKFP 51 (355)
Q Consensus 35 ~~L~~L~l~~~~~~~lP 51 (355)
++|+.|++++|.++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47889999999888776
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=0.0032 Score=54.41 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=54.9
Q ss_pred ccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccce
Q 036143 11 LLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTF 90 (355)
Q Consensus 11 l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 90 (355)
+.+.+-|++-||++..+. -..+++.|+.|.|+-|++..+-. +..+++|+.|+++.+.+..-..+. .+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~-YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELE-YLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHH-HHhcCchhhhH
Confidence 556666777777776653 23567778888888887777644 367888888888876553334444 67777778877
Q ss_pred EEEec
Q 036143 91 VGYFS 95 (355)
Q Consensus 91 ~l~~~ 95 (355)
.+..|
T Consensus 94 WL~EN 98 (388)
T KOG2123|consen 94 WLDEN 98 (388)
T ss_pred hhccC
Confidence 77533
No 68
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.76 E-value=0.011 Score=51.67 Aligned_cols=86 Identities=19% Similarity=0.093 Sum_probs=58.9
Q ss_pred cccccceecCCCcccc---ccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 10 KLLALQCLDLEYTAIK---EVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 10 ~l~~L~~L~L~~~~~~---~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
.+++++.|||.+|.+. ++-..+.+|++|++|+++.|.+..--...=.-+.+|++|-+.++... =......+..+++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~-w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS-WTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC-hhhhhhhhhcchh
Confidence 3678899999999776 45545578999999999999655321111025578999988764321 1222226778888
Q ss_pred ccceEEEecc
Q 036143 87 LDTFVGYFSK 96 (355)
Q Consensus 87 L~~L~l~~~~ 96 (355)
+++|+++.++
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 9999887654
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.71 E-value=0.0024 Score=55.20 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=59.2
Q ss_pred ccccccceecCCCccccccCcccccCcccceecccCcccccccchh-hhcCCCcceeeecccCCcccc----chhHhhcc
Q 036143 9 AKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGI-LPKLCNLYSLRLNWGSETSRE----TVQEAARS 83 (355)
Q Consensus 9 ~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i-~~~L~~L~~L~l~~~~~~~~~----~~~~~l~~ 83 (355)
.++..|++|.|+-|.|+.+- .+..|++|+.|.|..|.|.++..-. +.++++|++|-+..+.--... ... .+..
T Consensus 38 ~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~-VLR~ 115 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRK-VLRV 115 (388)
T ss_pred HhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHH-HHHH
Confidence 36888999999999998883 5889999999999999888775421 578888998888865322111 112 5667
Q ss_pred cccccceE
Q 036143 84 SDRLDTFV 91 (355)
Q Consensus 84 L~~L~~L~ 91 (355)
|++|+.|+
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 77777765
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.82 E-value=0.037 Score=29.48 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=9.9
Q ss_pred cccceecccCcccccccchh
Q 036143 35 ENLVHLTIYSKMLIKFPAGI 54 (355)
Q Consensus 35 ~~L~~L~l~~~~~~~lP~~i 54 (355)
.+|++|++++|.++.+|.++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34455555555555555443
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.82 E-value=0.037 Score=29.48 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=9.9
Q ss_pred cccceecccCcccccccchh
Q 036143 35 ENLVHLTIYSKMLIKFPAGI 54 (355)
Q Consensus 35 ~~L~~L~l~~~~~~~lP~~i 54 (355)
.+|++|++++|.++.+|.++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34455555555555555443
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.66 E-value=0.044 Score=29.19 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=16.8
Q ss_pred ccccceecCCCccccccCcc
Q 036143 11 LLALQCLDLEYTAIKEVPEG 30 (355)
Q Consensus 11 l~~L~~L~L~~~~~~~lP~~ 30 (355)
+++|++|+|++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46889999999999988864
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.66 E-value=0.044 Score=29.19 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=16.8
Q ss_pred ccccceecCCCccccccCcc
Q 036143 11 LLALQCLDLEYTAIKEVPEG 30 (355)
Q Consensus 11 l~~L~~L~L~~~~~~~lP~~ 30 (355)
+++|++|+|++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46889999999999988864
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.31 E-value=0.0069 Score=51.06 Aligned_cols=86 Identities=12% Similarity=0.186 Sum_probs=51.2
Q ss_pred CCCC--ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 3 ERVP--SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 3 ~~lP--~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
.++| +|..+..-.+||++.|.+..+-..+.-++.|..||++.+.+..+|.+. +.+..+++++...++. ...|..
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~---~~~p~s 106 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNH---SQQPKS 106 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccch---hhCCcc
Confidence 3456 666666667777777666666666666666666666666666666666 6666666666554332 222224
Q ss_pred hcccccccceEE
Q 036143 81 ARSSDRLDTFVG 92 (355)
Q Consensus 81 l~~L~~L~~L~l 92 (355)
.+.+++++.+..
T Consensus 107 ~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 107 QKKEPHPKKNEQ 118 (326)
T ss_pred ccccCCcchhhh
Confidence 555555555544
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.10 E-value=0.026 Score=46.62 Aligned_cols=69 Identities=22% Similarity=0.272 Sum_probs=40.4
Q ss_pred cCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccccc
Q 036143 195 KFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPEL 274 (355)
Q Consensus 195 ~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 274 (355)
.++.++.|.+.+|..+.+..-...-+-.++|+.|+|++|+++.+-= -+.+..|++|+.|.+.+++..
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-------------L~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-------------LACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-------------HHHHHHhhhhHHHHhcCchhh
Confidence 4555666677777666664322212235677777777777664431 115566777777777776655
Q ss_pred ce
Q 036143 275 KS 276 (355)
Q Consensus 275 ~~ 276 (355)
..
T Consensus 190 ~~ 191 (221)
T KOG3864|consen 190 AN 191 (221)
T ss_pred hc
Confidence 43
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.13 E-value=0.21 Score=38.27 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=51.2
Q ss_pred ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
.+.++.+|+.+.+.. .+..+++. +..+.+|+.+.+.++ +..++...+..+.+|+.+.+... ....... .+..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~-~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDN-AFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TT-TTTT-T
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccc-cccccc
Confidence 677888999999875 57777555 677889999999885 88888887788888999999642 1112222 566788
Q ss_pred cccceEEE
Q 036143 86 RLDTFVGY 93 (355)
Q Consensus 86 ~L~~L~l~ 93 (355)
+|+.+.+.
T Consensus 82 ~l~~i~~~ 89 (129)
T PF13306_consen 82 NLKNIDIP 89 (129)
T ss_dssp TECEEEET
T ss_pred cccccccC
Confidence 89888874
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.87 E-value=0.096 Score=50.16 Aligned_cols=14 Identities=36% Similarity=0.365 Sum_probs=7.1
Q ss_pred Ccccceeecccccc
Q 036143 260 LPRLKKLWLSFLPE 273 (355)
Q Consensus 260 ~~~L~~L~l~~~~~ 273 (355)
+++|++|.+.+|..
T Consensus 268 c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 268 CPNLETLSLSNCSN 281 (482)
T ss_pred CCCcceEccCCCCc
Confidence 44555555544543
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.43 E-value=0.36 Score=36.96 Aligned_cols=79 Identities=11% Similarity=0.083 Sum_probs=37.6
Q ss_pred cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEeccCcccc-cccccccc
Q 036143 31 MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFSKLDDFN-TYVKSSDG 109 (355)
Q Consensus 31 i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~ 109 (355)
+.++.+|+.+.+.. .+..++...|...++|+.+.+... .....-. .+..+++|+.+.+. +...... ..+.....
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~-~F~~~~~l~~i~~~-~~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDN-AFSNCKSLESITFP-NNLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TT-TTTT-TT-EEEEET-STT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--cccccee-eeeccccccccccc-cccccccccccccccc
Confidence 46677888888775 467777776677878888887752 2222222 56667677777773 2222222 22334455
Q ss_pred ccccc
Q 036143 110 QRSKH 114 (355)
Q Consensus 110 L~~L~ 114 (355)
++.+.
T Consensus 83 l~~i~ 87 (129)
T PF13306_consen 83 LKNID 87 (129)
T ss_dssp ECEEE
T ss_pred ccccc
Confidence 55444
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.39 E-value=0.049 Score=45.04 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=44.4
Q ss_pred HHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCC
Q 036143 218 LLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPS 297 (355)
Q Consensus 218 ~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~ 297 (355)
-+..+++++.|.+.+|..+..+--.. -.+.+|+|+.|+|++|+.+++--.. ....|++|+.|.+. +
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~------------l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~-~ 185 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLER------------LGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLY-D 185 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHH------------hcccccchheeeccCCCeechhHHH-HHHHhhhhHHHHhc-C
Confidence 35667777788888887776553211 2236788888888888876554110 11236788888887 5
Q ss_pred CCcccc
Q 036143 298 CPKLKR 303 (355)
Q Consensus 298 c~~L~~ 303 (355)
-+....
T Consensus 186 l~~v~~ 191 (221)
T KOG3864|consen 186 LPYVAN 191 (221)
T ss_pred chhhhc
Confidence 444433
No 80
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=89.70 E-value=0.3 Score=42.45 Aligned_cols=86 Identities=19% Similarity=0.086 Sum_probs=54.4
Q ss_pred ccccceecCCCcccc-----ccCcccccCcccceecccCccc----ccccchh------hhcCCCcceeeecccCCcccc
Q 036143 11 LLALQCLDLEYTAIK-----EVPEGMEMLENLVHLTIYSKML----IKFPAGI------LPKLCNLYSLRLNWGSETSRE 75 (355)
Q Consensus 11 l~~L~~L~L~~~~~~-----~lP~~i~~L~~L~~L~l~~~~~----~~lP~~i------~~~L~~L~~L~l~~~~~~~~~ 75 (355)
+..+..+||+||.|. .+...|.+-.+|+..+++.-.. .++|..+ +-++++|+.++++++.. +..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf-g~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF-GSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc-Ccc
Confidence 556778888888664 3455556667788887776311 2334332 36778888888887543 222
Q ss_pred chh---HhhcccccccceEEEeccC
Q 036143 76 TVQ---EAARSSDRLDTFVGYFSKL 97 (355)
Q Consensus 76 ~~~---~~l~~L~~L~~L~l~~~~~ 97 (355)
.++ ..|+.-+.|.||.+..|+.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCC
Confidence 222 1566777888888876654
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.16 E-value=0.035 Score=46.91 Aligned_cols=63 Identities=17% Similarity=0.070 Sum_probs=56.4
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccC
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGS 70 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~ 70 (355)
.++-++.|..||++.+.+..+|++++++..++.+++..|.....|.+. ++++++++++...+.
T Consensus 60 n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~-~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 60 NFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQ-KKEPHPKKNEQKKTE 122 (326)
T ss_pred chHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccc-cccCCcchhhhccCc
Confidence 456678888999999999999999999999999999999999999998 999999999988653
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.84 E-value=0.93 Score=24.10 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=12.0
Q ss_pred ccceecccCcccccccc
Q 036143 36 NLVHLTIYSKMLIKFPA 52 (355)
Q Consensus 36 ~L~~L~l~~~~~~~lP~ 52 (355)
+|++|++++|.++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56777777777777765
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.66 E-value=1.2 Score=23.72 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=8.3
Q ss_pred cccceecCCCccccc
Q 036143 12 LALQCLDLEYTAIKE 26 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~ 26 (355)
++|++|++++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 455666666665543
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.99 E-value=1.5 Score=23.18 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=13.2
Q ss_pred CCCccEEeeccCCCccc
Q 036143 196 FSHLKALWFSYCPNLQK 212 (355)
Q Consensus 196 ~~~L~~L~l~~~~~l~~ 212 (355)
+++|++|.+++|.++++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 36788888888887776
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=77.16 E-value=1.3 Score=22.85 Aligned_cols=14 Identities=36% Similarity=0.442 Sum_probs=6.0
Q ss_pred cccceecCCCcccc
Q 036143 12 LALQCLDLEYTAIK 25 (355)
Q Consensus 12 ~~L~~L~L~~~~~~ 25 (355)
++|++|++++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555443
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.65 E-value=4.3 Score=21.87 Aligned_cols=12 Identities=33% Similarity=0.501 Sum_probs=6.9
Q ss_pred ccceecCCCccc
Q 036143 13 ALQCLDLEYTAI 24 (355)
Q Consensus 13 ~L~~L~L~~~~~ 24 (355)
+|++|||++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 456666666544
No 87
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=56.57 E-value=16 Score=32.20 Aligned_cols=92 Identities=14% Similarity=0.233 Sum_probs=59.0
Q ss_pred cccccccceecCCCcc---c-cccCcc-------cccCcccceecccCcccc-cccchh---hhcCCCcceeeecccCCc
Q 036143 8 LAKLLALQCLDLEYTA---I-KEVPEG-------MEMLENLVHLTIYSKMLI-KFPAGI---LPKLCNLYSLRLNWGSET 72 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~---~-~~lP~~-------i~~L~~L~~L~l~~~~~~-~lP~~i---~~~L~~L~~L~l~~~~~~ 72 (355)
|.+-++|++-+++.-. . .++|+. +-+|++|+..+++.|.+. ..|..+ +++-+.|.||.+.+|+.-
T Consensus 54 ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 54 IANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 4456788888887652 1 244444 458899999999999443 455543 588899999999987531
Q ss_pred --cccchh---------HhhcccccccceEEEeccCcc
Q 036143 73 --SRETVQ---------EAARSSDRLDTFVGYFSKLDD 99 (355)
Q Consensus 73 --~~~~~~---------~~l~~L~~L~~L~l~~~~~~~ 99 (355)
.+..+. ....+-+.|+.+.+..+....
T Consensus 134 p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 134 PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence 111111 024456678888876666544
No 88
>PF10084 DUF2322: Uncharacterized protein conserved in bacteria (DUF2322); InterPro: IPR016755 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.33 E-value=22 Score=25.83 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=23.3
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccc
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLV 38 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~ 38 (355)
|..+|++..+..|..++-.++-+..+|..-|++-+|+
T Consensus 5 L~~LP~i~hl~~l~l~d~~g~~v~~I~n~pGk~GSL~ 41 (100)
T PF10084_consen 5 LATLPSIDHLAGLDLLDADGNVVAHIENKPGKLGSLA 41 (100)
T ss_pred hhhCCCccceeeeEeecCCCcEEEEecCCCCcceeHH
Confidence 4567777777777777777665556655555554444
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.61 E-value=36 Score=33.03 Aligned_cols=87 Identities=16% Similarity=0.121 Sum_probs=51.7
Q ss_pred ccCCCccEEeeccCCCccccchHHH-HhhcCCCCeEEEecCCCC-ceecccCcchhhhhcccccccccCcccceeecccc
Q 036143 194 AKFSHLKALWFSYCPNLQKLFSLQL-LAALQNLEFLVVQSCNRN-EEIVEVNDEETQKELGISAITITLPRLKKLWLSFL 271 (355)
Q Consensus 194 ~~~~~L~~L~l~~~~~l~~~~~~~~-l~~L~~L~~L~l~~~~~l-~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 271 (355)
..++.+..+.++++ ++..+...+. ....|+|..|+|++.... ...... .-.....|++|.+.|.
T Consensus 215 ~n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el-------------~K~k~l~Leel~l~GN 280 (585)
T KOG3763|consen 215 ENFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESEL-------------DKLKGLPLEELVLEGN 280 (585)
T ss_pred cCCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcchhhh-------------hhhcCCCHHHeeecCC
Confidence 46777778888877 5555544332 345788999999876221 111100 2235567888888888
Q ss_pred cccceecCCC---cee--cCCCceEEEE
Q 036143 272 PELKSVCSDN---AVL--ICNSLQEIQI 294 (355)
Q Consensus 272 ~~l~~i~~~~---~~l--~~~~L~~L~i 294 (355)
|-.+...... .++ .||+|..|+=
T Consensus 281 Plc~tf~~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 281 PLCTTFSDRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred ccccchhhhHHHHHHHHHhcchheeecC
Confidence 7666554311 111 2888888773
No 90
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=20.92 E-value=1.5e+02 Score=17.69 Aligned_cols=7 Identities=43% Similarity=0.539 Sum_probs=3.6
Q ss_pred ccceeec
Q 036143 262 RLKKLWL 268 (355)
Q Consensus 262 ~L~~L~l 268 (355)
++++|.+
T Consensus 13 ~l~~L~~ 19 (44)
T PF05725_consen 13 SLKSLIF 19 (44)
T ss_pred CCeEEEE
Confidence 4555555
Done!