Query 036143
Match_columns 355
No_of_seqs 175 out of 1955
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 16:47:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 1.6E-21 5.4E-26 176.7 17.6 240 11-339 80-320 (328)
2 4fcg_A Uncharacterized protein 99.8 5E-20 1.7E-24 166.8 15.9 208 1-295 92-309 (328)
3 2id5_A Lingo-1, leucine rich r 99.8 3.3E-20 1.1E-24 176.6 15.1 275 7-330 51-330 (477)
4 4fmz_A Internalin; leucine ric 99.8 4.1E-20 1.4E-24 168.6 13.0 106 194-332 218-323 (347)
5 3o6n_A APL1; leucine-rich repe 99.8 2E-20 6.8E-25 173.5 11.1 271 3-330 58-349 (390)
6 3o6n_A APL1; leucine-rich repe 99.8 1.2E-19 4.2E-24 168.2 13.5 258 2-299 81-350 (390)
7 4fmz_A Internalin; leucine ric 99.8 9.9E-20 3.4E-24 166.0 12.1 276 2-331 56-344 (347)
8 3oja_B Anopheles plasmodium-re 99.8 8.5E-20 2.9E-24 178.5 10.9 272 3-331 64-356 (597)
9 3v47_A TOLL-like receptor 5B a 99.8 3.9E-19 1.3E-23 168.0 13.9 109 194-330 296-405 (455)
10 2z7x_B TOLL-like receptor 1, v 99.8 2.4E-19 8.1E-24 172.5 12.3 88 7-98 40-128 (520)
11 3t6q_A CD180 antigen; protein- 99.8 3.2E-19 1.1E-23 174.7 12.0 285 2-332 266-559 (606)
12 3oja_B Anopheles plasmodium-re 99.8 6.4E-19 2.2E-23 172.3 12.6 258 2-299 87-356 (597)
13 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 9.3E-19 3.2E-23 170.0 13.2 93 2-98 64-159 (562)
14 2z81_A CD282 antigen, TOLL-lik 99.8 7.4E-19 2.5E-23 170.0 12.4 90 219-330 330-420 (549)
15 3bz5_A Internalin-J, INLJ; leu 99.8 2E-18 6.7E-23 163.2 14.7 97 7-114 37-133 (457)
16 4eco_A Uncharacterized protein 99.8 1.4E-19 4.9E-24 178.1 6.8 105 5-114 239-359 (636)
17 4ecn_A Leucine-rich repeat pro 99.8 4.5E-19 1.6E-23 178.6 10.5 110 5-115 440-580 (876)
18 2id5_A Lingo-1, leucine rich r 99.8 2.4E-18 8E-23 163.7 14.7 282 1-334 22-310 (477)
19 4ecn_A Leucine-rich repeat pro 99.8 7.7E-19 2.6E-23 176.9 11.9 107 197-335 728-842 (876)
20 1o6v_A Internalin A; bacterial 99.8 4.8E-18 1.6E-22 161.2 16.7 105 2-114 58-162 (466)
21 4eco_A Uncharacterized protein 99.8 2.3E-19 7.7E-24 176.7 7.1 294 3-335 263-602 (636)
22 3t6q_A CD180 antigen; protein- 99.8 1.7E-18 5.8E-23 169.6 12.8 109 2-114 24-135 (606)
23 3vq2_A TLR4, TOLL-like recepto 99.8 4E-18 1.4E-22 166.9 15.0 92 7-99 75-167 (606)
24 1o6v_A Internalin A; bacterial 99.8 5.6E-18 1.9E-22 160.7 15.1 279 2-334 80-389 (466)
25 3v47_A TOLL-like receptor 5B a 99.8 4E-18 1.4E-22 161.0 13.2 266 7-305 49-412 (455)
26 3rgz_A Protein brassinosteroid 99.8 1.6E-18 5.3E-23 174.4 10.9 107 194-327 439-545 (768)
27 3rgz_A Protein brassinosteroid 99.8 2.4E-18 8.4E-23 172.9 11.9 90 4-96 333-429 (768)
28 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-18 3.7E-23 157.0 7.7 92 194-306 218-309 (313)
29 3bz5_A Internalin-J, INLJ; leu 99.7 4.4E-18 1.5E-22 160.8 12.0 101 2-114 54-154 (457)
30 2z7x_B TOLL-like receptor 1, v 99.7 1.2E-17 4.1E-22 160.5 14.7 107 1-115 11-122 (520)
31 2z81_A CD282 antigen, TOLL-lik 99.7 7.5E-18 2.6E-22 163.0 11.9 107 7-114 45-154 (549)
32 3zyi_A Leucine-rich repeat-con 99.7 1.9E-17 6.7E-22 156.4 14.4 109 2-114 66-177 (452)
33 3zyj_A Leucine-rich repeat-con 99.7 2.2E-17 7.4E-22 155.5 14.4 109 2-114 55-166 (440)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 3.4E-17 1.2E-21 159.0 16.1 108 1-115 42-153 (562)
35 4g8a_A TOLL-like receptor 4; l 99.7 2E-17 6.8E-22 162.4 13.9 106 7-114 71-179 (635)
36 1ziw_A TOLL-like receptor 3; i 99.7 2.6E-17 8.8E-22 163.4 14.5 58 197-270 248-305 (680)
37 2ft3_A Biglycan; proteoglycan, 99.7 1.6E-17 5.4E-22 150.6 11.1 269 12-331 33-305 (332)
38 2z63_A TOLL-like receptor 4, v 99.7 1.7E-17 5.7E-22 161.2 12.0 68 2-70 88-160 (570)
39 3vq2_A TLR4, TOLL-like recepto 99.7 4.5E-17 1.6E-21 159.4 15.0 143 2-155 23-168 (606)
40 1ogq_A PGIP-2, polygalacturona 99.7 1.6E-18 5.6E-23 155.8 3.9 243 12-328 50-299 (313)
41 3j0a_A TOLL-like receptor 5; m 99.7 4.4E-17 1.5E-21 165.4 14.7 106 7-114 43-154 (844)
42 1xku_A Decorin; proteoglycan, 99.7 2.2E-16 7.5E-21 142.9 17.4 105 2-114 43-151 (330)
43 2ft3_A Biglycan; proteoglycan, 99.7 7E-17 2.4E-21 146.3 13.7 271 2-328 45-328 (332)
44 2z80_A TOLL-like receptor 2, v 99.7 1.4E-16 4.8E-21 145.6 15.5 259 2-330 43-311 (353)
45 2z63_A TOLL-like receptor 4, v 99.7 7.6E-17 2.6E-21 156.5 14.1 125 194-331 344-481 (570)
46 1xku_A Decorin; proteoglycan, 99.7 1.2E-16 4.1E-21 144.6 14.2 272 11-332 30-305 (330)
47 2z66_A Variable lymphocyte rec 99.7 2.5E-17 8.7E-22 147.4 9.6 107 195-329 148-257 (306)
48 3j0a_A TOLL-like receptor 5; m 99.7 2.8E-16 9.7E-21 159.5 16.1 292 1-334 15-376 (844)
49 1ziw_A TOLL-like receptor 3; i 99.7 7.3E-16 2.5E-20 152.9 15.6 290 2-332 16-341 (680)
50 3g06_A SSPH2 (leucine-rich rep 99.7 4.8E-16 1.6E-20 151.6 13.5 95 196-330 200-294 (622)
51 3zyi_A Leucine-rich repeat-con 99.7 4.7E-16 1.6E-20 146.9 13.1 249 6-330 47-300 (452)
52 2z66_A Variable lymphocyte rec 99.7 1.5E-16 5E-21 142.5 8.6 234 2-299 19-259 (306)
53 2xwt_C Thyrotropin receptor; s 99.6 1.6E-15 5.3E-20 130.8 14.0 85 13-98 32-118 (239)
54 3zyj_A Leucine-rich repeat-con 99.6 1.1E-15 3.8E-20 143.8 13.6 250 6-330 36-289 (440)
55 1jl5_A Outer protein YOPM; leu 99.6 9.8E-16 3.3E-20 144.6 12.9 80 12-100 131-210 (454)
56 1ozn_A Reticulon 4 receptor; N 99.6 2E-15 7E-20 133.6 12.6 110 2-114 23-135 (285)
57 3o53_A Protein LRIM1, AGAP0063 99.6 2E-15 7E-20 135.8 12.5 104 195-328 142-245 (317)
58 2z62_A TOLL-like receptor 4, v 99.6 3.5E-15 1.2E-19 131.4 13.5 109 2-114 19-130 (276)
59 4ay9_X Follicle-stimulating ho 99.6 3.6E-15 1.2E-19 136.1 14.0 99 198-327 155-253 (350)
60 1h6u_A Internalin H; cell adhe 99.6 2.5E-15 8.5E-20 134.7 12.6 100 7-114 36-135 (308)
61 2z80_A TOLL-like receptor 2, v 99.6 9.9E-16 3.4E-20 139.9 9.2 111 2-114 64-180 (353)
62 1wwl_A Monocyte differentiatio 99.6 3.2E-15 1.1E-19 134.2 9.4 253 8-333 39-309 (312)
63 2o6q_A Variable lymphocyte rec 99.6 1.7E-14 5.9E-19 126.6 13.8 98 13-114 17-115 (270)
64 3oja_A Leucine-rich immune mol 99.6 8.1E-15 2.8E-19 139.6 12.1 80 12-100 34-114 (487)
65 1jl5_A Outer protein YOPM; leu 99.6 1.7E-14 5.8E-19 136.1 13.5 91 12-114 111-201 (454)
66 1p9a_G Platelet glycoprotein I 99.6 2.3E-14 8E-19 127.1 13.0 102 7-114 5-106 (290)
67 1h6u_A Internalin H; cell adhe 99.6 3.4E-14 1.2E-18 127.2 13.4 105 2-114 53-157 (308)
68 1ozn_A Reticulon 4 receptor; N 99.5 5.1E-14 1.8E-18 124.5 13.7 96 15-114 14-111 (285)
69 2xwt_C Thyrotropin receptor; s 99.5 8.9E-14 3E-18 119.7 14.5 224 6-330 5-236 (239)
70 3rfs_A Internalin B, repeat mo 99.5 1.2E-14 4.2E-19 127.7 8.3 209 7-311 36-245 (272)
71 3g06_A SSPH2 (leucine-rich rep 99.5 6.8E-14 2.3E-18 136.5 13.2 237 1-301 51-297 (622)
72 4g8a_A TOLL-like receptor 4; l 99.5 3.4E-14 1.2E-18 139.3 10.8 110 194-330 466-577 (635)
73 2ast_B S-phase kinase-associat 99.5 1.1E-14 3.7E-19 131.9 5.7 100 12-114 70-174 (336)
74 1h6t_A Internalin B; cell adhe 99.5 7.6E-14 2.6E-18 123.9 10.9 100 7-114 41-140 (291)
75 3o53_A Protein LRIM1, AGAP0063 99.5 6.2E-14 2.1E-18 126.0 10.4 95 9-114 31-126 (317)
76 2ast_B S-phase kinase-associat 99.5 5.2E-15 1.8E-19 134.0 3.1 213 7-304 88-308 (336)
77 1wwl_A Monocyte differentiatio 99.5 3.8E-14 1.3E-18 127.2 8.5 224 5-298 57-306 (312)
78 2z62_A TOLL-like receptor 4, v 99.5 3E-13 1E-17 119.0 13.9 95 16-114 11-106 (276)
79 2o6q_A Variable lymphocyte rec 99.5 2.9E-13 9.8E-18 118.8 13.7 187 1-272 27-216 (270)
80 3rfs_A Internalin B, repeat mo 99.5 1.1E-13 3.9E-18 121.6 11.0 187 2-279 53-240 (272)
81 3oja_A Leucine-rich immune mol 99.5 1.2E-13 4.1E-18 131.5 11.0 102 2-114 46-150 (487)
82 1m9s_A Internalin B; cell inva 99.5 1.4E-13 4.9E-18 133.9 10.8 102 5-114 36-137 (605)
83 4ay9_X Follicle-stimulating ho 99.4 2.4E-12 8E-17 117.3 14.0 213 7-308 5-221 (350)
84 2ca6_A RAN GTPase-activating p 99.4 4E-14 1.4E-18 130.8 1.9 247 4-299 23-314 (386)
85 1h6t_A Internalin B; cell adhe 99.4 1.4E-12 4.9E-17 115.6 11.7 154 2-234 58-211 (291)
86 1p9a_G Platelet glycoprotein I 99.4 2.4E-12 8.3E-17 114.1 12.5 197 31-328 6-203 (290)
87 3m19_A Variable lymphocyte rec 99.4 2.6E-12 9E-17 111.4 11.0 102 9-114 10-113 (251)
88 3ogk_B Coronatine-insensitive 99.4 4.1E-14 1.4E-18 137.9 -0.7 111 195-327 434-545 (592)
89 1m9s_A Internalin B; cell inva 99.4 2.3E-12 8E-17 125.4 11.4 105 2-114 55-159 (605)
90 3m19_A Variable lymphocyte rec 99.3 5.1E-12 1.7E-16 109.6 11.6 109 2-114 26-137 (251)
91 4ezg_A Putative uncharacterize 99.3 2E-12 7E-17 107.8 8.5 77 32-114 41-118 (197)
92 4glp_A Monocyte differentiatio 99.3 5.4E-12 1.8E-16 112.9 11.4 228 13-332 65-306 (310)
93 1z7x_W Ribonuclease inhibitor; 99.3 1.8E-14 6.2E-19 136.1 -5.5 88 7-97 51-154 (461)
94 3ogk_B Coronatine-insensitive 99.3 8.7E-14 3E-18 135.6 -0.9 81 9-93 161-251 (592)
95 2ca6_A RAN GTPase-activating p 99.3 4.3E-13 1.5E-17 123.9 3.8 250 12-331 9-314 (386)
96 1xeu_A Internalin C; cellular 99.3 3.6E-12 1.2E-16 111.3 8.7 83 10-99 17-99 (263)
97 3goz_A Leucine-rich repeat-con 99.3 2.1E-12 7.1E-17 118.2 4.2 91 8-99 18-123 (362)
98 3e6j_A Variable lymphocyte rec 99.2 2.8E-11 9.6E-16 103.4 9.5 109 2-114 31-141 (229)
99 1z7x_W Ribonuclease inhibitor; 99.2 1.3E-12 4.4E-17 123.3 1.0 114 196-331 198-324 (461)
100 2v9t_B SLIT homolog 2 protein 99.2 1.7E-11 5.7E-16 104.1 7.2 109 2-114 23-134 (220)
101 2p1m_B Transport inhibitor res 99.2 3E-13 1E-17 131.8 -4.3 86 10-95 128-221 (594)
102 4ezg_A Putative uncharacterize 99.2 3.7E-11 1.3E-15 100.1 8.7 103 7-114 39-142 (197)
103 2ell_A Acidic leucine-rich nuc 99.2 1.9E-11 6.5E-16 99.1 6.5 100 11-114 23-126 (168)
104 1a9n_A U2A', U2A'; complex (nu 99.2 2.1E-11 7.2E-16 99.7 6.8 104 6-114 13-119 (176)
105 2je0_A Acidic leucine-rich nuc 99.2 1.1E-11 3.8E-16 98.4 4.8 100 11-114 16-119 (149)
106 4glp_A Monocyte differentiatio 99.2 2.7E-11 9.3E-16 108.3 7.0 203 10-273 89-306 (310)
107 2wfh_A SLIT homolog 2 protein 99.2 5.4E-11 1.8E-15 98.8 8.3 109 2-114 22-132 (193)
108 2p1m_B Transport inhibitor res 99.2 4.3E-13 1.5E-17 130.7 -6.2 266 9-300 208-518 (594)
109 2o6s_A Variable lymphocyte rec 99.1 3E-10 1E-14 95.3 11.1 109 2-114 19-130 (208)
110 3e6j_A Variable lymphocyte rec 99.1 8.5E-11 2.9E-15 100.4 7.8 110 2-114 52-165 (229)
111 1dce_A Protein (RAB geranylger 99.1 7.3E-11 2.5E-15 114.1 7.7 96 13-114 442-539 (567)
112 1xeu_A Internalin C; cellular 99.1 9.2E-11 3.2E-15 102.3 7.6 151 2-173 31-182 (263)
113 2r9u_A Variable lymphocyte rec 99.1 1E-10 3.4E-15 95.5 7.1 96 2-101 24-121 (174)
114 2v70_A SLIT-2, SLIT homolog 2 99.1 8.5E-11 2.9E-15 99.7 6.9 140 2-153 23-166 (220)
115 2v9t_B SLIT homolog 2 protein 99.1 1.9E-10 6.6E-15 97.5 8.8 92 7-100 51-143 (220)
116 3cvr_A Invasion plasmid antige 99.1 2.8E-10 9.5E-15 109.8 11.0 88 12-114 59-146 (571)
117 2o6s_A Variable lymphocyte rec 99.1 1.7E-10 5.7E-15 96.9 8.3 111 2-114 40-154 (208)
118 2xot_A Amphoterin-induced prot 99.1 2.8E-10 9.6E-15 104.0 10.2 38 195-234 161-200 (361)
119 1ds9_A Outer arm dynein; leuci 99.1 6.7E-12 2.3E-16 104.7 -1.1 107 2-114 37-146 (198)
120 4b8c_D Glucose-repressible alc 99.1 7.6E-11 2.6E-15 117.4 6.2 105 7-115 219-323 (727)
121 1w8a_A SLIT protein; signaling 99.1 1.7E-10 5.8E-15 95.7 7.3 84 13-98 30-115 (192)
122 3g39_A Variable lymphocyte rec 99.1 1.7E-10 5.7E-15 93.8 7.1 94 2-99 21-116 (170)
123 2v70_A SLIT-2, SLIT homolog 2 99.1 3.1E-10 1.1E-14 96.2 8.5 154 6-172 6-162 (220)
124 2ell_A Acidic leucine-rich nuc 99.0 2.3E-10 8E-15 92.6 6.0 108 4-114 40-153 (168)
125 3cvr_A Invasion plasmid antige 99.0 9.9E-10 3.4E-14 105.9 10.8 95 2-114 71-166 (571)
126 2o6r_A Variable lymphocyte rec 99.0 8.5E-10 2.9E-14 90.1 8.2 109 2-114 19-130 (177)
127 3goz_A Leucine-rich repeat-con 99.0 5.8E-11 2E-15 108.6 1.2 90 8-98 46-151 (362)
128 2wfh_A SLIT homolog 2 protein 99.0 5.7E-10 1.9E-14 92.6 7.0 97 1-99 42-140 (193)
129 4b8c_D Glucose-repressible alc 99.0 2.6E-10 9E-15 113.5 5.9 95 1-99 235-330 (727)
130 1w8a_A SLIT protein; signaling 99.0 4.6E-10 1.6E-14 93.1 5.7 96 2-99 41-140 (192)
131 2xot_A Amphoterin-induced prot 99.0 6.6E-10 2.3E-14 101.5 6.6 109 2-114 30-142 (361)
132 2je0_A Acidic leucine-rich nuc 98.9 9.3E-10 3.2E-14 87.1 6.1 108 4-114 33-146 (149)
133 2o6r_A Variable lymphocyte rec 98.9 2E-09 6.9E-14 87.8 7.5 96 2-99 40-138 (177)
134 1ds9_A Outer arm dynein; leuci 98.9 2.9E-11 9.8E-16 100.9 -3.9 95 2-99 60-154 (198)
135 1dce_A Protein (RAB geranylger 98.9 1.5E-09 5.2E-14 104.9 7.3 94 2-99 453-547 (567)
136 1a9n_A U2A', U2A'; complex (nu 98.8 1.5E-09 5.2E-14 88.5 4.2 111 2-114 31-146 (176)
137 3sb4_A Hypothetical leucine ri 98.8 6.6E-08 2.3E-12 86.9 14.8 100 196-326 225-327 (329)
138 3g39_A Variable lymphocyte rec 98.8 5.8E-09 2E-13 84.6 6.9 98 13-114 10-108 (170)
139 2ifg_A High affinity nerve gro 98.8 5.5E-09 1.9E-13 94.7 6.7 95 2-99 21-117 (347)
140 2r9u_A Variable lymphocyte rec 98.8 9E-09 3.1E-13 83.8 7.1 104 6-114 7-111 (174)
141 2ifg_A High affinity nerve gro 98.5 1.4E-07 4.8E-12 85.4 7.2 104 6-114 2-109 (347)
142 4fdw_A Leucine rich hypothetic 98.4 3.7E-06 1.3E-10 77.6 12.5 251 3-334 125-384 (401)
143 3e4g_A ATP synthase subunit S, 98.2 6E-07 2.1E-11 72.3 3.8 91 5-96 53-150 (176)
144 3e4g_A ATP synthase subunit S, 98.0 2.7E-06 9.1E-11 68.5 3.3 90 197-304 61-155 (176)
145 4fdw_A Leucine rich hypothetic 98.0 1.8E-05 6.3E-10 72.9 9.3 228 2-295 146-378 (401)
146 2ra8_A Uncharacterized protein 98.0 1.3E-05 4.5E-10 72.7 8.0 66 26-97 130-205 (362)
147 4fs7_A Uncharacterized protein 97.9 6E-05 2.1E-09 69.3 11.4 59 7-67 66-125 (394)
148 3un9_A NLR family member X1; l 97.9 2E-06 7E-11 78.5 0.8 12 222-233 238-249 (372)
149 3sb4_A Hypothetical leucine ri 97.8 1.6E-05 5.5E-10 71.2 5.8 100 11-114 225-327 (329)
150 3rw6_A Nuclear RNA export fact 97.8 9.5E-06 3.2E-10 70.2 3.7 83 11-98 140-233 (267)
151 3rw6_A Nuclear RNA export fact 97.3 7.8E-05 2.7E-09 64.4 1.6 81 10-92 168-258 (267)
152 1io0_A Tropomodulin; LRR prote 97.2 7.1E-05 2.4E-09 61.1 0.6 89 8-98 32-136 (185)
153 3un9_A NLR family member X1; l 97.2 9E-05 3.1E-09 67.6 1.2 103 10-114 124-245 (372)
154 4gt6_A Cell surface protein; l 97.1 0.01 3.6E-07 54.1 15.0 100 195-327 263-364 (394)
155 1io0_A Tropomodulin; LRR prote 97.0 0.00015 5.1E-09 59.1 1.3 88 8-97 61-163 (185)
156 3rfe_A Platelet glycoprotein I 96.7 0.0018 6.2E-08 49.3 5.1 55 15-71 11-67 (130)
157 4fs7_A Uncharacterized protein 96.4 0.037 1.3E-06 50.4 12.4 93 195-312 295-388 (394)
158 2ra8_A Uncharacterized protein 96.2 0.0022 7.7E-08 58.0 3.0 83 7-94 134-228 (362)
159 3rfe_A Platelet glycoprotein I 95.4 0.016 5.4E-07 44.0 4.3 43 4-48 24-68 (130)
160 4h09_A Hypothetical leucine ri 92.4 0.25 8.5E-06 44.5 6.8 35 32-67 260-294 (379)
161 4h09_A Hypothetical leucine ri 92.0 0.14 4.7E-06 46.2 4.6 82 7-92 258-340 (379)
162 4gt6_A Cell surface protein; l 90.9 0.42 1.5E-05 43.3 6.7 80 8-92 261-341 (394)
163 1pgv_A TMD-1, tropomodulin TMD 79.8 0.53 1.8E-05 38.2 1.0 82 11-94 40-135 (197)
164 1pgv_A TMD-1, tropomodulin TMD 76.6 1.7 5.7E-05 35.2 3.1 82 32-114 38-132 (197)
165 2lz0_A Uncharacterized protein 22.3 81 0.0028 21.9 3.4 36 31-67 16-51 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.6e-21 Score=176.70 Aligned_cols=240 Identities=20% Similarity=0.194 Sum_probs=180.9
Q ss_pred ccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccce
Q 036143 11 LLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTF 90 (355)
Q Consensus 11 l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 90 (355)
..++++|++++|.++.+|..++++.+|++|++++|.+..+|..+ +++++|++|+++++... .++..++.+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLR---ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCCC---CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-hccCCCCEEECCCCccc---cCcHHHhcCcCCCEE
Confidence 47899999999999999999999999999999999999999998 99999999999987552 344489999999999
Q ss_pred EEEeccCcc-ccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCchhHHHH
Q 036143 91 VGYFSKLDD-FNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQGL 169 (355)
Q Consensus 91 ~l~~~~~~~-~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~L~~L 169 (355)
++..+.... .+..+... . .. ..+.....++.+.+.++.+..
T Consensus 156 ~L~~n~~~~~~p~~~~~~------~------------~~-----~~~~~l~~L~~L~L~~n~l~~--------------- 197 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST------D------------AS-----GEHQGLVNLQSLRLEWTGIRS--------------- 197 (328)
T ss_dssp EEEEETTCCCCCSCSEEE------C-------------C-----CCEEESTTCCEEEEEEECCCC---------------
T ss_pred ECCCCCCccccChhHhhc------c------------ch-----hhhccCCCCCEEECcCCCcCc---------------
Confidence 998765433 22222220 0 00 001112234444554444331
Q ss_pred HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhh
Q 036143 170 IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQK 249 (355)
Q Consensus 170 l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~ 249 (355)
++.. .+.+++|++|+++++ .++.+.. .+..+++|+.|++++|.....++.
T Consensus 198 ----------lp~~---------l~~l~~L~~L~L~~N-~l~~l~~--~l~~l~~L~~L~Ls~n~~~~~~p~-------- 247 (328)
T 4fcg_A 198 ----------LPAS---------IANLQNLKSLKIRNS-PLSALGP--AIHHLPKLEELDLRGCTALRNYPP-------- 247 (328)
T ss_dssp ----------CCGG---------GGGCTTCCEEEEESS-CCCCCCG--GGGGCTTCCEEECTTCTTCCBCCC--------
T ss_pred ----------chHh---------hcCCCCCCEEEccCC-CCCcCch--hhccCCCCCEEECcCCcchhhhHH--------
Confidence 1110 146789999999999 4555443 278899999999999988887775
Q ss_pred hcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEehh
Q 036143 250 ELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRK 329 (355)
Q Consensus 250 ~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~ 329 (355)
.+..+++|++|++.+|...+.++. ....+++|++|++. +|+.++.+|.++..++ +|+.+++..
T Consensus 248 ------~~~~l~~L~~L~L~~n~~~~~~p~--~~~~l~~L~~L~L~-~n~~~~~iP~~l~~L~--------~L~~l~l~~ 310 (328)
T 4fcg_A 248 ------IFGGRAPLKRLILKDCSNLLTLPL--DIHRLTQLEKLDLR-GCVNLSRLPSLIAQLP--------ANCIILVPP 310 (328)
T ss_dssp ------CTTCCCCCCEEECTTCTTCCBCCT--TGGGCTTCCEEECT-TCTTCCCCCGGGGGSC--------TTCEEECCG
T ss_pred ------HhcCCCCCCEEECCCCCchhhcch--hhhcCCCCCEEeCC-CCCchhhccHHHhhcc--------CceEEeCCH
Confidence 778999999999999988888876 34446799999999 9999999999998877 999999988
Q ss_pred hhhcccccCc
Q 036143 330 ELWESLEWDQ 339 (355)
Q Consensus 330 ~~~~~l~~~~ 339 (355)
+..+.+.+..
T Consensus 311 ~~~~~l~~~~ 320 (328)
T 4fcg_A 311 HLQAQLDQHR 320 (328)
T ss_dssp GGSCC-----
T ss_pred HHHHHHhhhh
Confidence 8877776543
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=5e-20 Score=166.82 Aligned_cols=208 Identities=17% Similarity=0.210 Sum_probs=152.5
Q ss_pred CCCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
+++.+| .++++++|++|++++|.+..+|..++++.+|++|++++|.+..+|..+ +++++|++|++++|..... ...
T Consensus 92 ~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~n~~~~~-~p~- 168 (328)
T 4fcg_A 92 PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI-ASLNRLRELSIRACPELTE-LPE- 168 (328)
T ss_dssp CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG-GGCTTCCEEEEEEETTCCC-CCS-
T ss_pred CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH-hcCcCCCEEECCCCCCccc-cCh-
Confidence 367899 899999999999999999999999999999999999999999999998 9999999999998754322 222
Q ss_pred hh---------cccccccceEEEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEecc
Q 036143 80 AA---------RSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGC 150 (355)
Q Consensus 80 ~l---------~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l 150 (355)
.+ +.+++|++|++..+....++..++.++.|+.|. +.++
T Consensus 169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~--------------------------------L~~N 216 (328)
T 4fcg_A 169 PLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK--------------------------------IRNS 216 (328)
T ss_dssp CSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEE--------------------------------EESS
T ss_pred hHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEE--------------------------------ccCC
Confidence 34 459999999999887776666666666666555 2222
Q ss_pred CCccCCCccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEE
Q 036143 151 KICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVV 230 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l 230 (355)
.+.+. +.. ...+++|++|++++|.....+.. .+..+++|+.|++
T Consensus 217 ~l~~l-------------------------~~~---------l~~l~~L~~L~Ls~n~~~~~~p~--~~~~l~~L~~L~L 260 (328)
T 4fcg_A 217 PLSAL-------------------------GPA---------IHHLPKLEELDLRGCTALRNYPP--IFGGRAPLKRLIL 260 (328)
T ss_dssp CCCCC-------------------------CGG---------GGGCTTCCEEECTTCTTCCBCCC--CTTCCCCCCEEEC
T ss_pred CCCcC-------------------------chh---------hccCCCCCEEECcCCcchhhhHH--HhcCCCCCCEEEC
Confidence 22210 000 03566778888888755554322 2567788888888
Q ss_pred ecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEc
Q 036143 231 QSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQIT 295 (355)
Q Consensus 231 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~ 295 (355)
++|...+.++. .+..+++|++|++++|+.++.++. ....+++|+.+.+.
T Consensus 261 ~~n~~~~~~p~--------------~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 261 KDCSNLLTLPL--------------DIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVP 309 (328)
T ss_dssp TTCTTCCBCCT--------------TGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECC
T ss_pred CCCCchhhcch--------------hhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCC
Confidence 87777777765 566788888888888877777776 33345577777764
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=176.59 Aligned_cols=275 Identities=17% Similarity=0.105 Sum_probs=165.3
Q ss_pred ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
.+.++++|++|++++|.++.+ |..++++.+|++|++++|.+..+|.+.|+++++|++|+++++.. ...... .+..++
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~-~~~~l~ 128 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI-VILLDY-MFQDLY 128 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCC-CEECTT-TTTTCT
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcc-ccCChh-Hccccc
Confidence 566666666666666666654 55666666677777766666666665446666777777666433 222222 566667
Q ss_pred cccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCch
Q 036143 86 RLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPK 164 (355)
Q Consensus 86 ~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~ 164 (355)
+|++|++..+...... ..+..++.|+.|. +....+.+.. ...+.....++.+.+.++.+.......+..++
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-------l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 200 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLT-------LEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEE-------EESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEECTTCSCSCT
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEE-------CCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEeChhhcccCc
Confidence 7777776655554432 3355555555555 2222222211 11223344566667777666554433334455
Q ss_pred hHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccC
Q 036143 165 DVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVN 243 (355)
Q Consensus 165 ~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~ 243 (355)
.|+.| +.++ .....++... ....+|++|+++++ +++.+. ...+..+++|+.|+++++. +..+..
T Consensus 201 ~L~~L~l~~~-~~~~~~~~~~---------~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~-- 265 (477)
T 2id5_A 201 RLKVLEISHW-PYLDTMTPNC---------LYGLNLTSLSITHC-NLTAVP-YLAVRHLVYLRFLNLSYNP-ISTIEG-- 265 (477)
T ss_dssp TCCEEEEECC-TTCCEECTTT---------TTTCCCSEEEEESS-CCCSCC-HHHHTTCTTCCEEECCSSC-CCEECT--
T ss_pred ccceeeCCCC-ccccccCccc---------ccCccccEEECcCC-cccccC-HHHhcCccccCeeECCCCc-CCccCh--
Confidence 56665 5554 3333332211 22348899999988 566543 3347889999999999765 444432
Q ss_pred cchhhhhcccccccccCcccceeecccccccceecCCCcee-cCCCceEEEEcCCCCccccccCC-CCCCCCCCCCCCCC
Q 036143 244 DEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVL-ICNSLQEIQITPSCPKLKRLSLR-LPPLDNGQPSPSPA 321 (355)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l-~~~~L~~L~i~~~c~~L~~lp~~-~~~l~~~~~~~~~~ 321 (355)
..+..+++|++|++.++ .+..+.. .++ .+++|++|++. +| ++..+|.. +..+. +
T Consensus 266 -----------~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~~l~~L~~L~L~-~N-~l~~~~~~~~~~l~--------~ 321 (477)
T 2id5_A 266 -----------SMLHELLRLQEIQLVGG-QLAVVEP--YAFRGLNYLRVLNVS-GN-QLTTLEESVFHSVG--------N 321 (477)
T ss_dssp -----------TSCTTCTTCCEEECCSS-CCSEECT--TTBTTCTTCCEEECC-SS-CCSCCCGGGBSCGG--------G
T ss_pred -----------hhccccccCCEEECCCC-ccceECH--HHhcCcccCCEEECC-CC-cCceeCHhHcCCCc--------c
Confidence 15678899999999987 4555544 233 36799999997 65 77777754 34443 8
Q ss_pred eeEEEehhh
Q 036143 322 LEVIKIRKE 330 (355)
Q Consensus 322 L~~l~~~~~ 330 (355)
|+.+++..+
T Consensus 322 L~~L~l~~N 330 (477)
T 2id5_A 322 LETLILDSN 330 (477)
T ss_dssp CCEEECCSS
T ss_pred cCEEEccCC
Confidence 999988433
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=4.1e-20 Score=168.60 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=54.4
Q ss_pred ccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 194 AKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 194 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
..+++|++|++++| +++...+ +..+++|+.|+++++. +..+. .+..+++|++|+++++ .
T Consensus 218 ~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~---------------~~~~l~~L~~L~l~~n-~ 276 (347)
T 4fmz_A 218 ANMTRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGTNQ-ISDIN---------------AVKDLTKLKMLNVGSN-Q 276 (347)
T ss_dssp GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCG---------------GGTTCTTCCEEECCSS-C
T ss_pred hcCCcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCCCc-cCCCh---------------hHhcCCCcCEEEccCC-c
Confidence 35566677777666 3444332 4566666777766542 22221 3456666666666665 3
Q ss_pred cceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEehhhhh
Q 036143 274 LKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRKELW 332 (355)
Q Consensus 274 l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~~~~ 332 (355)
+..+.. ...+++|++|++. +|.--...|..+..+. +|+.+++..+.+
T Consensus 277 l~~~~~---~~~l~~L~~L~L~-~n~l~~~~~~~l~~l~--------~L~~L~L~~n~l 323 (347)
T 4fmz_A 277 ISDISV---LNNLSQLNSLFLN-NNQLGNEDMEVIGGLT--------NLTTLFLSQNHI 323 (347)
T ss_dssp CCCCGG---GGGCTTCSEEECC-SSCCCGGGHHHHHTCT--------TCSEEECCSSSC
T ss_pred cCCChh---hcCCCCCCEEECc-CCcCCCcChhHhhccc--------cCCEEEccCCcc
Confidence 333311 1224566666666 5543333333333332 666666644433
No 5
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=2e-20 Score=173.50 Aligned_cols=271 Identities=16% Similarity=0.171 Sum_probs=141.0
Q ss_pred CCCC--ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 3 ERVP--SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 3 ~~lP--~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
+.+| .+..+++|++|++++|.++.+|. .++.+.+|++|++++|.+..+|...++++++|++|+++++... .++.
T Consensus 58 ~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~l~~ 134 (390)
T 3o6n_A 58 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS---SLPR 134 (390)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCT
T ss_pred hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC---cCCH
Confidence 3455 25667777777777777766643 5677777777777777777766554477777777777765431 2221
Q ss_pred -hhcccccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccc---------------cceecccCCc
Q 036143 80 -AARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRF---------------YSFLRTREAN 142 (355)
Q Consensus 80 -~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~ 142 (355)
.++.+++|++|++..+...... ..++.++.|+.|....+ .+.+... ...+.....+
T Consensus 135 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-------~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L 207 (390)
T 3o6n_A 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-------RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 207 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-------CCSBCCGGGCTTCSEEECCSSCCSEEECCSSC
T ss_pred HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-------cCCccccccccccceeecccccccccCCCCcc
Confidence 3466777777777666655443 23555666666552211 1111100 0000001112
Q ss_pred cEEEEeccCCccCCCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhh
Q 036143 143 KSVCFYGCKICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAA 221 (355)
Q Consensus 143 ~~~~L~~l~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~ 221 (355)
+.+.+.++.+.... ...++.|+.| +.++ .++.+ + ....+++|++|+++++ .++...+.. +..
T Consensus 208 ~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n--~l~~~---~-------~l~~l~~L~~L~Ls~n-~l~~~~~~~-~~~ 270 (390)
T 3o6n_A 208 EELDASHNSINVVR---GPVNVELTILKLQHN--NLTDT---A-------WLLNYPGLVEVDLSYN-ELEKIMYHP-FVK 270 (390)
T ss_dssp SEEECCSSCCCEEE---CCCCSSCCEEECCSS--CCCCC---G-------GGGGCTTCSEEECCSS-CCCEEESGG-GTT
T ss_pred eEEECCCCeeeecc---ccccccccEEECCCC--CCccc---H-------HHcCCCCccEEECCCC-cCCCcChhH-ccc
Confidence 22222222222110 0112233333 3332 11111 1 1135666777777766 444433222 556
Q ss_pred cCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCcc
Q 036143 222 LQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKL 301 (355)
Q Consensus 222 L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L 301 (355)
+++|+.|+++++ .+..++. ....+++|++|+++++ .+..++. ....+++|++|++. +| .+
T Consensus 271 l~~L~~L~L~~n-~l~~~~~--------------~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~-~N-~i 330 (390)
T 3o6n_A 271 MQRLERLYISNN-RLVALNL--------------YGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLD-HN-SI 330 (390)
T ss_dssp CSSCCEEECCSS-CCCEEEC--------------SSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECC-SS-CC
T ss_pred cccCCEEECCCC-cCcccCc--------------ccCCCCCCCEEECCCC-cceecCc--cccccCcCCEEECC-CC-cc
Confidence 677777777653 3444433 3456777777777776 3555544 22335678888886 55 35
Q ss_pred ccccCCCCCCCCCCCCCCCCeeEEEehhh
Q 036143 302 KRLSLRLPPLDNGQPSPSPALEVIKIRKE 330 (355)
Q Consensus 302 ~~lp~~~~~l~~~~~~~~~~L~~l~~~~~ 330 (355)
..+| + ..+++|+.+++..+
T Consensus 331 ~~~~--~--------~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 331 VTLK--L--------STHHTLKNLTLSHN 349 (390)
T ss_dssp CCCC--C--------CTTCCCSEEECCSS
T ss_pred ceeC--c--------hhhccCCEEEcCCC
Confidence 5554 2 33558999998433
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=1.2e-19 Score=168.19 Aligned_cols=258 Identities=13% Similarity=0.137 Sum_probs=174.2
Q ss_pred CCCCC--ccccccccceecCCCccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+| .+..+++|++|++++|.++.+| ..++.+++|++|++++|.+..+|.++++++++|++|+++++.. ......
T Consensus 81 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~ 159 (390)
T 3o6n_A 81 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDD 159 (390)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTT
T ss_pred ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc-CccChh
Confidence 34454 7899999999999999999775 4579999999999999999999998779999999999998654 333333
Q ss_pred HhhcccccccceEEEeccCcccccccccccccccccccccc-------ceeEeecCCCccccce-ecccCCccEEEEecc
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQV-------STVYNGSAANTRFYSF-LRTREANKSVCFYGC 150 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~-------~~~~~~~~~~~~~~~~-l~~~~~~~~~~L~~l 150 (355)
.++.+++|++|++..+..... .++.++.|+.+....+. ..+....+++...... ......++.+.+.++
T Consensus 160 -~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n 236 (390)
T 3o6n_A 160 -TFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 236 (390)
T ss_dssp -TTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSS
T ss_pred -hccCCCCCCEEECCCCcCCcc--ccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCC
Confidence 689999999999987776554 23444555544432221 0111222222221110 011234667777777
Q ss_pred CCccCCCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEE
Q 036143 151 KICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLV 229 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~ 229 (355)
.+.+.. .+..++.|+.| +.++ .++.+.. .....+++|++|+++++ +++.+... ...+++|+.|+
T Consensus 237 ~l~~~~--~l~~l~~L~~L~Ls~n--~l~~~~~--------~~~~~l~~L~~L~L~~n-~l~~~~~~--~~~l~~L~~L~ 301 (390)
T 3o6n_A 237 NLTDTA--WLLNYPGLVEVDLSYN--ELEKIMY--------HPFVKMQRLERLYISNN-RLVALNLY--GQPIPTLKVLD 301 (390)
T ss_dssp CCCCCG--GGGGCTTCSEEECCSS--CCCEEES--------GGGTTCSSCCEEECCSS-CCCEEECS--SSCCTTCCEEE
T ss_pred CCcccH--HHcCCCCccEEECCCC--cCCCcCh--------hHccccccCCEEECCCC-cCcccCcc--cCCCCCCCEEE
Confidence 776542 22445567777 6665 2222211 01146889999999998 56654332 36789999999
Q ss_pred EecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCC
Q 036143 230 VQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCP 299 (355)
Q Consensus 230 l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~ 299 (355)
++++ .+..++. .+..+++|++|++.+++ +..+.. + .+++|++|++. +++
T Consensus 302 L~~n-~l~~~~~--------------~~~~l~~L~~L~L~~N~-i~~~~~--~--~~~~L~~L~l~-~N~ 350 (390)
T 3o6n_A 302 LSHN-HLLHVER--------------NQPQFDRLENLYLDHNS-IVTLKL--S--THHTLKNLTLS-HND 350 (390)
T ss_dssp CCSS-CCCCCGG--------------GHHHHTTCSEEECCSSC-CCCCCC--C--TTCCCSEEECC-SSC
T ss_pred CCCC-cceecCc--------------cccccCcCCEEECCCCc-cceeCc--h--hhccCCEEEcC-CCC
Confidence 9986 4556654 56789999999999985 555532 2 35699999997 654
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.81 E-value=9.9e-20 Score=166.03 Aligned_cols=276 Identities=16% Similarity=0.169 Sum_probs=172.8
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.+|.+..+++|++|++++|.++.+|. ++.+++|++|++++|.+..+|. + +++++|++|+++++.. ..++ .+
T Consensus 56 i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~-~-~~l~~L~~L~l~~n~i---~~~~-~~ 128 (347)
T 4fmz_A 56 VASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA-L-QNLTNLRELYLNEDNI---SDIS-PL 128 (347)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCSEEECTTSCC---CCCG-GG
T ss_pred cccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchH-H-cCCCcCCEEECcCCcc---cCch-hh
Confidence 4567788889999999999998888876 8899999999999998888763 5 8999999999988654 3344 47
Q ss_pred cccccccceEEEeccCcccccccccccccccccccccc----------ceeEeecCCCccc--cceecccCCccEEEEec
Q 036143 82 RSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQV----------STVYNGSAANTRF--YSFLRTREANKSVCFYG 149 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~----------~~~~~~~~~~~~~--~~~l~~~~~~~~~~L~~ 149 (355)
..+++|++|++..+........+..++.|+.|....+. ..+....++++.. ...+.....++.+.+.+
T Consensus 129 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 129 ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYV 208 (347)
T ss_dssp TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeeccc
Confidence 78888888888666443333345555555555521110 0011111111110 00112222333444444
Q ss_pred cCCccCCCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeE
Q 036143 150 CKICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFL 228 (355)
Q Consensus 150 l~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L 228 (355)
+.+..... +..++.|+.| +.++ .++.++. ...+++|++|+++++ .++.+. .+..+++|+.|
T Consensus 209 n~l~~~~~--~~~~~~L~~L~l~~n--~l~~~~~----------~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L 270 (347)
T 4fmz_A 209 NQITDITP--VANMTRLNSLKIGNN--KITDLSP----------LANLSQLTWLEIGTN-QISDIN---AVKDLTKLKML 270 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSS--CCCCCGG----------GTTCTTCCEEECCSS-CCCCCG---GGTTCTTCCEE
T ss_pred CCCCCCch--hhcCCcCCEEEccCC--ccCCCcc----------hhcCCCCCEEECCCC-ccCCCh---hHhcCCCcCEE
Confidence 44433222 2333455555 5544 2222221 257889999999999 566543 26789999999
Q ss_pred EEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCC
Q 036143 229 VVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRL 308 (355)
Q Consensus 229 ~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~ 308 (355)
++++| .+..+. .+..+++|++|++++|. +...... ....+++|++|++. +|+ +..++. +
T Consensus 271 ~l~~n-~l~~~~---------------~~~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~~L~L~-~n~-l~~~~~-~ 329 (347)
T 4fmz_A 271 NVGSN-QISDIS---------------VLNNLSQLNSLFLNNNQ-LGNEDME-VIGGLTNLTTLFLS-QNH-ITDIRP-L 329 (347)
T ss_dssp ECCSS-CCCCCG---------------GGGGCTTCSEEECCSSC-CCGGGHH-HHHTCTTCSEEECC-SSS-CCCCGG-G
T ss_pred EccCC-ccCCCh---------------hhcCCCCCCEEECcCCc-CCCcChh-HhhccccCCEEEcc-CCc-cccccC-h
Confidence 99986 444442 56789999999999985 3333220 12236799999998 886 666544 4
Q ss_pred CCCCCCCCCCCCCeeEEEehhhh
Q 036143 309 PPLDNGQPSPSPALEVIKIRKEL 331 (355)
Q Consensus 309 ~~l~~~~~~~~~~L~~l~~~~~~ 331 (355)
..+ ++|+.+++..+.
T Consensus 330 ~~l--------~~L~~L~l~~N~ 344 (347)
T 4fmz_A 330 ASL--------SKMDSADFANQV 344 (347)
T ss_dssp GGC--------TTCSEESSSCC-
T ss_pred hhh--------hccceeehhhhc
Confidence 443 489999885443
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=8.5e-20 Score=178.50 Aligned_cols=272 Identities=15% Similarity=0.140 Sum_probs=152.9
Q ss_pred CCCC--ccccccccceecCCCccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 3 ERVP--SLAKLLALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 3 ~~lP--~i~~l~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
..+| .+..+++|++|++++|.+..+| ..++.+.+|++|++++|.+..+|...|+++++|++|++++|.. ......
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~- 141 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRG- 141 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-
T ss_pred CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC-CCCCHH-
Confidence 3455 3567788888888888877664 3678888888888888888877776558888888888887643 222222
Q ss_pred hhcccccccceEEEeccCccccc-cccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCC--
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICERE-- 156 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~-- 156 (355)
.++.+++|++|++..+.+..... .++.++.|+.|....+ .+.+.. +.....+..+.+.++.+.+..
T Consensus 142 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-------~l~~~~----~~~l~~L~~L~l~~n~l~~l~~~ 210 (597)
T 3oja_B 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-------RLTHVD----LSLIPSLFHANVSYNLLSTLAIP 210 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-------CCSBCC----GGGCTTCSEEECCSSCCSEEECC
T ss_pred HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-------CCCCcC----hhhhhhhhhhhcccCccccccCC
Confidence 35778888888887776665443 4666677776662221 111110 011112222333322222100
Q ss_pred --------------CccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhh
Q 036143 157 --------------GVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAA 221 (355)
Q Consensus 157 --------------~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~ 221 (355)
.+....+++|+.| +.++ .++. .+ ....+++|+.|+++++ .++...+.. +..
T Consensus 211 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n--~l~~---~~-------~l~~l~~L~~L~Ls~N-~l~~~~~~~-~~~ 276 (597)
T 3oja_B 211 IAVEELDASHNSINVVRGPVNVELTILKLQHN--NLTD---TA-------WLLNYPGLVEVDLSYN-ELEKIMYHP-FVK 276 (597)
T ss_dssp TTCSEEECCSSCCCEEECSCCSCCCEEECCSS--CCCC---CG-------GGGGCTTCSEEECCSS-CCCEEESGG-GTT
T ss_pred chhheeeccCCcccccccccCCCCCEEECCCC--CCCC---Ch-------hhccCCCCCEEECCCC-ccCCCCHHH-hcC
Confidence 0000112233333 3332 1111 11 1235667777777776 444433322 566
Q ss_pred cCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCcc
Q 036143 222 LQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKL 301 (355)
Q Consensus 222 L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L 301 (355)
+++|+.|+++++ .+..++. ....+|+|++|+++++. +..++. ....+++|++|++. +| .+
T Consensus 277 l~~L~~L~Ls~N-~l~~l~~--------------~~~~l~~L~~L~Ls~N~-l~~i~~--~~~~l~~L~~L~L~-~N-~l 336 (597)
T 3oja_B 277 MQRLERLYISNN-RLVALNL--------------YGQPIPTLKVLDLSHNH-LLHVER--NQPQFDRLENLYLD-HN-SI 336 (597)
T ss_dssp CSSCCEEECTTS-CCCEEEC--------------SSSCCTTCCEEECCSSC-CCCCGG--GHHHHTTCSEEECC-SS-CC
T ss_pred ccCCCEEECCCC-CCCCCCc--------------ccccCCCCcEEECCCCC-CCccCc--ccccCCCCCEEECC-CC-CC
Confidence 777777777753 3444443 44567788888887763 445544 23335688888886 55 35
Q ss_pred ccccCCCCCCCCCCCCCCCCeeEEEehhhh
Q 036143 302 KRLSLRLPPLDNGQPSPSPALEVIKIRKEL 331 (355)
Q Consensus 302 ~~lp~~~~~l~~~~~~~~~~L~~l~~~~~~ 331 (355)
..+| + ..+++|+.|++..+-
T Consensus 337 ~~~~--~--------~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 337 VTLK--L--------STHHTLKNLTLSHND 356 (597)
T ss_dssp CCCC--C--------CTTCCCSEEECCSSC
T ss_pred CCcC--h--------hhcCCCCEEEeeCCC
Confidence 5554 2 335599999984433
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=3.9e-19 Score=167.99 Aligned_cols=109 Identities=19% Similarity=0.230 Sum_probs=70.0
Q ss_pred ccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 194 AKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 194 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
..+++|++|+++++ .++...+.. +..+++|++|+++++.. ..+.. ..+..+++|++|+++++.
T Consensus 296 ~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N~l-~~~~~-------------~~~~~l~~L~~L~Ls~N~- 358 (455)
T 3v47_A 296 SHFTDLEQLTLAQN-EINKIDDNA-FWGLTHLLKLNLSQNFL-GSIDS-------------RMFENLDKLEVLDLSYNH- 358 (455)
T ss_dssp TTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSCC-CEECG-------------GGGTTCTTCCEEECCSSC-
T ss_pred ccCCCCCEEECCCC-cccccChhH-hcCcccCCEEECCCCcc-CCcCh-------------hHhcCcccCCEEECCCCc-
Confidence 35667777777777 444433322 56778888888876543 33321 156678899999998874
Q ss_pred cceecCCCceecCCCceEEEEcCCCCccccccCCC-CCCCCCCCCCCCCeeEEEehhh
Q 036143 274 LKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRL-PPLDNGQPSPSPALEVIKIRKE 330 (355)
Q Consensus 274 l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~-~~l~~~~~~~~~~L~~l~~~~~ 330 (355)
+..+... .-..+++|++|++. + .+++.+|... ..++ +|+.+++..+
T Consensus 359 l~~~~~~-~~~~l~~L~~L~L~-~-N~l~~~~~~~~~~l~--------~L~~L~l~~N 405 (455)
T 3v47_A 359 IRALGDQ-SFLGLPNLKELALD-T-NQLKSVPDGIFDRLT--------SLQKIWLHTN 405 (455)
T ss_dssp CCEECTT-TTTTCTTCCEEECC-S-SCCSCCCTTTTTTCT--------TCCEEECCSS
T ss_pred ccccChh-hccccccccEEECC-C-CccccCCHhHhccCC--------cccEEEccCC
Confidence 5555331 12236799999996 5 4677777543 4444 9999999433
No 10
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=2.4e-19 Score=172.46 Aligned_cols=88 Identities=16% Similarity=0.149 Sum_probs=54.5
Q ss_pred ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
.+..+++|++|++++|.++.+ |..++++++|++|++++|.+..+|.. .+++|++|+++++.. ....++..++.++
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l-~~~~~p~~~~~l~ 115 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAF-DALPICKEFGNMS 115 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCC-SSCCCCGGGGGCT
T ss_pred hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCCcc-ccccchhhhccCC
Confidence 566666777777777666655 55666677777777777666666653 566666666666543 2222222667777
Q ss_pred cccceEEEeccCc
Q 036143 86 RLDTFVGYFSKLD 98 (355)
Q Consensus 86 ~L~~L~l~~~~~~ 98 (355)
+|++|++..+...
T Consensus 116 ~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 116 QLKFLGLSTTHLE 128 (520)
T ss_dssp TCCEEEEEESSCC
T ss_pred cceEEEecCcccc
Confidence 7777777665543
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.79 E-value=3.2e-19 Score=174.72 Aligned_cols=285 Identities=14% Similarity=0.108 Sum_probs=163.8
Q ss_pred CCCCC--ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .++.+++|++|++++|.++.+|..++.+++|++|++++|.+..++...++++++|++|+++++.........
T Consensus 266 l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~- 344 (606)
T 3t6q_A 266 FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG- 344 (606)
T ss_dssp CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS-
T ss_pred cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh-
Confidence 34455 477778888888888877788877888888888888888777664433378888888888776432222222
Q ss_pred hhcccccccceEEEeccCccc---cccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCC
Q 036143 80 AARSSDRLDTFVGYFSKLDDF---NTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICERE 156 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~ 156 (355)
.++.+++|++|++..+..... ...++.++.|+.|....+ .+.+. .+..+.....++.+.+.++.+.+..
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-------~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-------EPLSL-KTEAFKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-------SCEEE-CTTTTTTCTTCSEEECTTCCEECCT
T ss_pred hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-------cCCcC-CHHHhcCCccCCeEECCCCcCCCcc
Confidence 577778888888776665543 234556666666662111 11100 1112222344556666666554432
Q ss_pred Cc-cccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCcccc-chHHHHhhcCCCCeEEEecC
Q 036143 157 GV-TIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKL-FSLQLLAALQNLEFLVVQSC 233 (355)
Q Consensus 157 ~~-~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~~L~l~~~ 233 (355)
.. .+..++.|+.| +.++ .+..... . ....+++|++|+++++.-.... .....+..+++|+.|++++|
T Consensus 417 ~~~~~~~l~~L~~L~l~~n--~l~~~~~--~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHS--LLDISSE--Q------LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp TCCTTTTCTTCCEEECTTC--CCBTTCT--T------TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred cchhhhCcccCCEEECCCC--ccCCcCH--H------HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 21 12344556666 6554 1111111 0 0145778888888888432211 11123667888888888876
Q ss_pred CCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccc-cCCCCCCC
Q 036143 234 NRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRL-SLRLPPLD 312 (355)
Q Consensus 234 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~l-p~~~~~l~ 312 (355)
......+. .+..+++|++|+++++. +..+... ....+++| +|++. +| ++..+ |..+..++
T Consensus 487 ~l~~~~~~--------------~~~~l~~L~~L~Ls~N~-l~~~~~~-~l~~l~~L-~L~L~-~N-~l~~~~~~~~~~l~ 547 (606)
T 3t6q_A 487 DLSSIDQH--------------AFTSLKMMNHVDLSHNR-LTSSSIE-ALSHLKGI-YLNLA-SN-HISIILPSLLPILS 547 (606)
T ss_dssp CCCEECTT--------------TTTTCTTCCEEECCSSC-CCGGGGG-GGTTCCSC-EEECC-SS-CCCCCCGGGHHHHH
T ss_pred ccCccChh--------------hhccccCCCEEECCCCc-cCcCChh-HhCccccc-EEECc-CC-cccccCHhhcccCC
Confidence 54333333 56778888888888874 3333220 11225677 88886 55 44444 34444444
Q ss_pred CCCCCCCCCeeEEEehhhhh
Q 036143 313 NGQPSPSPALEVIKIRKELW 332 (355)
Q Consensus 313 ~~~~~~~~~L~~l~~~~~~~ 332 (355)
+|+.+++..+.|
T Consensus 548 --------~L~~L~l~~N~~ 559 (606)
T 3t6q_A 548 --------QQRTINLRQNPL 559 (606)
T ss_dssp --------TSSEEECTTCCE
T ss_pred --------CCCEEeCCCCCc
Confidence 888888844443
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=6.4e-19 Score=172.32 Aligned_cols=258 Identities=13% Similarity=0.153 Sum_probs=174.0
Q ss_pred CCCCC--ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+| .++.+++|++|+|++|.+..+|.. ++.+++|++|++++|.+..+|.++|+++++|++|++++|.. ......
T Consensus 87 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~~~~~ 165 (597)
T 3oja_B 87 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDD 165 (597)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTT
T ss_pred CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC-CCCChh
Confidence 34454 889999999999999999987654 69999999999999999999998779999999999998754 333334
Q ss_pred HhhcccccccceEEEeccCcccccccccccccccccccccc-c------eeEeecCCCcccccee-cccCCccEEEEecc
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQV-S------TVYNGSAANTRFYSFL-RTREANKSVCFYGC 150 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~-~------~~~~~~~~~~~~~~~l-~~~~~~~~~~L~~l 150 (355)
.++.+++|++|+++.+...... ++.++.|+.|....+. . .+....++++...... .....+..+.+.++
T Consensus 166 -~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n 242 (597)
T 3oja_B 166 -TFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 242 (597)
T ss_dssp -TTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSS
T ss_pred -hhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCC
Confidence 7899999999999877765542 4445555555432221 0 1111222222111100 01124566677777
Q ss_pred CCccCCCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEE
Q 036143 151 KICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLV 229 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~ 229 (355)
.+.+.. .+..++.|+.| +.++ .++.+.+ ...+.+++|+.|+++++ +++.+... ...+++|+.|+
T Consensus 243 ~l~~~~--~l~~l~~L~~L~Ls~N--~l~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~ 307 (597)
T 3oja_B 243 NLTDTA--WLLNYPGLVEVDLSYN--ELEKIMY--------HPFVKMQRLERLYISNN-RLVALNLY--GQPIPTLKVLD 307 (597)
T ss_dssp CCCCCG--GGGGCTTCSEEECCSS--CCCEEES--------GGGTTCSSCCEEECTTS-CCCEEECS--SSCCTTCCEEE
T ss_pred CCCCCh--hhccCCCCCEEECCCC--ccCCCCH--------HHhcCccCCCEEECCCC-CCCCCCcc--cccCCCCcEEE
Confidence 766532 22445567666 6665 2222211 01157899999999998 56654332 35689999999
Q ss_pred EecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCC
Q 036143 230 VQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCP 299 (355)
Q Consensus 230 l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~ 299 (355)
++++. +..++. .+..+++|++|++.++. +..++. + .+++|++|++. +++
T Consensus 308 Ls~N~-l~~i~~--------------~~~~l~~L~~L~L~~N~-l~~~~~--~--~~~~L~~L~l~-~N~ 356 (597)
T 3oja_B 308 LSHNH-LLHVER--------------NQPQFDRLENLYLDHNS-IVTLKL--S--THHTLKNLTLS-HND 356 (597)
T ss_dssp CCSSC-CCCCGG--------------GHHHHTTCSEEECCSSC-CCCCCC--C--TTCCCSEEECC-SSC
T ss_pred CCCCC-CCccCc--------------ccccCCCCCEEECCCCC-CCCcCh--h--hcCCCCEEEee-CCC
Confidence 99864 446654 66789999999999985 555432 2 35699999998 765
No 13
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=9.3e-19 Score=169.97 Aligned_cols=93 Identities=15% Similarity=0.136 Sum_probs=60.6
Q ss_pred CCCCC--ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+| +++++++|++|++++|.++.+ |..++++++|++|++++|.+..+|.. .+++|++|+++++.. .....+
T Consensus 64 i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l-~~l~~p 139 (562)
T 3a79_B 64 ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDF-DVLPVC 139 (562)
T ss_dssp CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCC-SBCCCC
T ss_pred ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCc-cccCch
Confidence 34454 667777777777777777655 55567777777777777777777664 677777777776543 222222
Q ss_pred HhhcccccccceEEEeccCc
Q 036143 79 EAARSSDRLDTFVGYFSKLD 98 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~ 98 (355)
..++++++|++|++..+...
T Consensus 140 ~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 140 KEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp GGGGGCTTCCEEEEECSBCC
T ss_pred HhhcccCcccEEecCCCccc
Confidence 26777777777777766543
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=7.4e-19 Score=170.04 Aligned_cols=90 Identities=21% Similarity=0.229 Sum_probs=52.2
Q ss_pred HhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCC-CceecCCCceEEEEcCC
Q 036143 219 LAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSD-NAVLICNSLQEIQITPS 297 (355)
Q Consensus 219 l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-~~~l~~~~L~~L~i~~~ 297 (355)
+..+++|+.|+++++.....++.. ...++.+++|++|+++++. ++.+... .....+++|++|++. +
T Consensus 330 ~~~l~~L~~L~Ls~N~l~~~~~~~-----------~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls-~ 396 (549)
T 2z81_A 330 SQHLKSLEFLDLSENLMVEEYLKN-----------SACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDIS-R 396 (549)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHH-----------HTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECT-T
T ss_pred HhcCccccEEEccCCccccccccc-----------hhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECC-C
Confidence 356788888888776544433210 0134577888888887763 4443210 011235688888886 6
Q ss_pred CCccccccCCCCCCCCCCCCCCCCeeEEEehhh
Q 036143 298 CPKLKRLSLRLPPLDNGQPSPSPALEVIKIRKE 330 (355)
Q Consensus 298 c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~~ 330 (355)
| +++.+|..+..++ +|+.+++..+
T Consensus 397 N-~l~~lp~~~~~~~--------~L~~L~Ls~N 420 (549)
T 2z81_A 397 N-TFHPMPDSCQWPE--------KMRFLNLSST 420 (549)
T ss_dssp C-CCCCCCSCCCCCT--------TCCEEECTTS
T ss_pred C-CCccCChhhcccc--------cccEEECCCC
Confidence 5 6667777665443 5666665433
No 15
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=2e-18 Score=163.22 Aligned_cols=97 Identities=21% Similarity=0.216 Sum_probs=60.4
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
+++++++|++|++++|.++.+| +++.+++|++|++++|.+..+| + +.+++|++|+++++... + + .++.+++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~-~~l~~L~~L~Ls~N~l~-~--~--~~~~l~~ 107 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--L-SQNTNLTYLACDSNKLT-N--L--DVTPLTK 107 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--C-TTCTTCSEEECCSSCCS-C--C--CCTTCTT
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--c-ccCCCCCEEECcCCCCc-e--e--ecCCCCc
Confidence 5566777777777777766666 5677777777777777666665 4 67777777777665431 1 2 2566666
Q ss_pred ccceEEEeccCccccccccccccccccc
Q 036143 87 LDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 87 L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
|++|++..+...... ++.++.|+.|.
T Consensus 108 L~~L~L~~N~l~~l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD--VSQNPLLTYLN 133 (457)
T ss_dssp CCEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred CCEEECCCCcCCeec--CCCCCcCCEEE
Confidence 777766655554432 44555555554
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.77 E-value=1.4e-19 Score=178.09 Aligned_cols=105 Identities=10% Similarity=0.137 Sum_probs=73.2
Q ss_pred CC-ccc--cccccceecCCCcccc-ccCcccccCcccceecccCcc-cc--cccchhhhcC------CCcceeeecccCC
Q 036143 5 VP-SLA--KLLALQCLDLEYTAIK-EVPEGMEMLENLVHLTIYSKM-LI--KFPAGILPKL------CNLYSLRLNWGSE 71 (355)
Q Consensus 5 lP-~i~--~l~~L~~L~L~~~~~~-~lP~~i~~L~~L~~L~l~~~~-~~--~lP~~i~~~L------~~L~~L~l~~~~~ 71 (355)
+| +++ ++++|++|++++|.+. .+|..++++++|++|++++|. +. .+|.++ +++ ++|++|+++++..
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcC
Confidence 77 777 8888888888888654 678888888888888888886 66 377777 666 7788888877654
Q ss_pred ccccchhH--hhcccccccceEEEeccCc-cccccccccccccccc
Q 036143 72 TSRETVQE--AARSSDRLDTFVGYFSKLD-DFNTYVKSSDGQRSKH 114 (355)
Q Consensus 72 ~~~~~~~~--~l~~L~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~ 114 (355)
. .++. .++.+++|++|++..+... .++ .++.++.|+.|.
T Consensus 318 ~---~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 318 K---TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp S---SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred C---ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 2 3443 5777777777777666655 333 555555555554
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=4.5e-19 Score=178.62 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=91.3
Q ss_pred CC-ccccccccceecCCCccccc------------------cCcccc--cCcccceecccCcc-cccccchhhhcCCCcc
Q 036143 5 VP-SLAKLLALQCLDLEYTAIKE------------------VPEGME--MLENLVHLTIYSKM-LIKFPAGILPKLCNLY 62 (355)
Q Consensus 5 lP-~i~~l~~L~~L~L~~~~~~~------------------lP~~i~--~L~~L~~L~l~~~~-~~~lP~~i~~~L~~L~ 62 (355)
|| +++++++|++|+|++|.++. +|..++ ++.+|++|++++|. ...+|..+ +++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCC
Confidence 89 99999999999999999987 999988 99999999999995 56788888 9999999
Q ss_pred eeeecccCCccccchhHhhcccc-------cccceEEEeccCccccc--ccccccccccccc
Q 036143 63 SLRLNWGSETSRETVQEAARSSD-------RLDTFVGYFSKLDDFNT--YVKSSDGQRSKHF 115 (355)
Q Consensus 63 ~L~l~~~~~~~~~~~~~~l~~L~-------~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~~ 115 (355)
+|+++++....+..+|..++.++ +|++|++..+....++. .++.++.|+.|..
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~L 580 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEEC
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEEC
Confidence 99999875233313444677776 99999998888876666 6888888887773
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=163.75 Aligned_cols=282 Identities=17% Similarity=0.177 Sum_probs=192.1
Q ss_pred CCCCCC-ccccccccceecCCCcccccc-CcccccCcccceecccCcccccc-cchhhhcCCCcceeeecccCCccccch
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKF-PAGILPKLCNLYSLRLNWGSETSRETV 77 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~l-P~~i~~~L~~L~~L~l~~~~~~~~~~~ 77 (355)
+++.+| .+. .++++|++++|.++.+ |..+.++.+|++|++++|.+..+ |..+ +++++|++|+++++.. .....
T Consensus 22 ~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l-~~~~~ 97 (477)
T 2id5_A 22 RFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRSNRL-KLIPL 97 (477)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCC-CSCCT
T ss_pred CcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhh-hCCccCCEEECCCCcC-CccCc
Confidence 367788 664 6899999999999977 56789999999999999999888 4455 9999999999998654 23322
Q ss_pred hHhhcccccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCC
Q 036143 78 QEAARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICERE 156 (355)
Q Consensus 78 ~~~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~ 156 (355)
. .++.+++|++|++..+...... ..+..+..|+.|.. ....+.+. .+..+.....++.+.+.++.+....
T Consensus 98 ~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l-------~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 98 G-VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV-------GDNDLVYI-SHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp T-SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE-------CCTTCCEE-CTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred c-cccCCCCCCEEECCCCccccCChhHccccccCCEEEC-------CCCcccee-ChhhccCCCCCCEEECCCCcCcccC
Confidence 3 5789999999999877776553 45777788887772 22222211 1122333456777888888776544
Q ss_pred CccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCC
Q 036143 157 GVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNR 235 (355)
Q Consensus 157 ~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~ 235 (355)
...+..++.|+.| +.++ .+..+... ....+++|++|+++++..+..+... .....+|+.|+++++.
T Consensus 169 ~~~l~~l~~L~~L~l~~n--~i~~~~~~--------~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~- 235 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHL--NINAIRDY--------SFKRLYRLKVLEISHWPYLDTMTPN--CLYGLNLTSLSITHCN- 235 (477)
T ss_dssp HHHHTTCTTCCEEEEESC--CCCEECTT--------CSCSCTTCCEEEEECCTTCCEECTT--TTTTCCCSEEEEESSC-
T ss_pred hhHhcccCCCcEEeCCCC--cCcEeChh--------hcccCcccceeeCCCCccccccCcc--cccCccccEEECcCCc-
Confidence 3333445556655 5553 22222221 1146788999999998777665432 2344589999999764
Q ss_pred CceecccCcchhhhhcccccccccCcccceeecccccccceecCCCcee-cCCCceEEEEcCCCCccccc-cCCCCCCCC
Q 036143 236 NEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVL-ICNSLQEIQITPSCPKLKRL-SLRLPPLDN 313 (355)
Q Consensus 236 l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l-~~~~L~~L~i~~~c~~L~~l-p~~~~~l~~ 313 (355)
+..++. ..+..+++|++|+++++. +..+.. ..+ .+++|++|++. +| ++..+ |..+..+.
T Consensus 236 l~~~~~-------------~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~~~l~~L~~L~L~-~n-~l~~~~~~~~~~l~- 296 (477)
T 2id5_A 236 LTAVPY-------------LAVRHLVYLRFLNLSYNP-ISTIEG--SMLHELLRLQEIQLV-GG-QLAVVEPYAFRGLN- 296 (477)
T ss_dssp CCSCCH-------------HHHTTCTTCCEEECCSSC-CCEECT--TSCTTCTTCCEEECC-SS-CCSEECTTTBTTCT-
T ss_pred ccccCH-------------HHhcCccccCeeECCCCc-CCccCh--hhccccccCCEEECC-CC-ccceECHHHhcCcc-
Confidence 444432 145688999999999885 666654 333 36799999997 66 45554 55665554
Q ss_pred CCCCCCCCeeEEEehhhhhcc
Q 036143 314 GQPSPSPALEVIKIRKELWES 334 (355)
Q Consensus 314 ~~~~~~~~L~~l~~~~~~~~~ 334 (355)
+|+.|++..+....
T Consensus 297 -------~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 297 -------YLRVLNVSGNQLTT 310 (477)
T ss_dssp -------TCCEEECCSSCCSC
T ss_pred -------cCCEEECCCCcCce
Confidence 99999996554433
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=7.7e-19 Score=176.94 Aligned_cols=107 Identities=19% Similarity=0.233 Sum_probs=71.1
Q ss_pred CCccEEeeccCCCccccchHHHHh--hcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccc--
Q 036143 197 SHLKALWFSYCPNLQKLFSLQLLA--ALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLP-- 272 (355)
Q Consensus 197 ~~L~~L~l~~~~~l~~~~~~~~l~--~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-- 272 (355)
++|+.|++++| +++.+.. . +. .+++|+.|+++++. +..++. .+..+++|+.|++++++
T Consensus 728 ~~L~~L~Ls~N-~L~~lp~-~-l~~~~l~~L~~L~Ls~N~-L~~lp~--------------~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 728 YLLTTIDLRFN-KLTSLSD-D-FRATTLPYLSNMDVSYNC-FSSFPT--------------QPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp GGCCEEECCSS-CCCCCCG-G-GSTTTCTTCCEEECCSSC-CSSCCC--------------GGGGCTTCCEEECCCCBCT
T ss_pred CCccEEECCCC-CCccchH-H-hhhccCCCcCEEEeCCCC-CCccch--------------hhhcCCCCCEEECCCCCCc
Confidence 37888888888 5554332 2 33 78888888888654 333554 66788899999987643
Q ss_pred ----ccceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEehhhhhccc
Q 036143 273 ----ELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRKELWESL 335 (355)
Q Consensus 273 ----~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~~~~~~l 335 (355)
..+.++. ....+++|++|++. +|. ++.+|..+. ++|+.|++..+-+..+
T Consensus 790 s~N~l~~~ip~--~l~~L~~L~~L~Ls-~N~-L~~Ip~~l~----------~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 790 EGNRILRQWPT--GITTCPSLIQLQIG-SND-IRKVDEKLT----------PQLYILDIADNPNISI 842 (876)
T ss_dssp TCCBCCCCCCT--TGGGCSSCCEEECC-SSC-CCBCCSCCC----------SSSCEEECCSCTTCEE
T ss_pred ccccccccChH--HHhcCCCCCEEECC-CCC-CCccCHhhc----------CCCCEEECCCCCCCcc
Confidence 2333433 22336789999997 764 488887652 3899999966655444
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.77 E-value=4.8e-18 Score=161.22 Aligned_cols=105 Identities=11% Similarity=0.212 Sum_probs=84.2
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.+|.+..+++|++|++++|.++.+|. ++++.+|++|++++|.+..+|. + +++++|++|++++|.. ..++ .+
T Consensus 58 i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~-~~l~~L~~L~L~~n~l---~~~~-~~ 130 (466)
T 1o6v_A 58 IKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-L-ANLTNLTGLTLFNNQI---TDID-PL 130 (466)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCC---CCCG-GG
T ss_pred CccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-h-cCCCCCCEEECCCCCC---CCCh-HH
Confidence 5667888889999999999999998876 9999999999999999988887 5 9999999999998754 3345 58
Q ss_pred cccccccceEEEeccCccccccccccccccccc
Q 036143 82 RSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
+.+++|++|++..+...... .++.++.|+.|.
T Consensus 131 ~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~ 162 (466)
T 1o6v_A 131 KNLTNLNRLELSSNTISDIS-ALSGLTSLQQLS 162 (466)
T ss_dssp TTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEE
T ss_pred cCCCCCCEEECCCCccCCCh-hhccCCcccEee
Confidence 88999999999877765543 355555555554
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.77 E-value=2.3e-19 Score=176.67 Aligned_cols=294 Identities=14% Similarity=0.162 Sum_probs=182.0
Q ss_pred CCCC-ccccccccceecCCCcc-cc--ccCcccccC------cccceecccCcccccccc--hhhhcCCCcceeeecccC
Q 036143 3 ERVP-SLAKLLALQCLDLEYTA-IK--EVPEGMEML------ENLVHLTIYSKMLIKFPA--GILPKLCNLYSLRLNWGS 70 (355)
Q Consensus 3 ~~lP-~i~~l~~L~~L~L~~~~-~~--~lP~~i~~L------~~L~~L~l~~~~~~~lP~--~i~~~L~~L~~L~l~~~~ 70 (355)
..+| +++++++|++|++++|. ++ .+|..++.+ .+|++|++++|.+..+|. .+ +++++|++|+++++.
T Consensus 263 ~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l-~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL-QKMKKLGMLECLYNQ 341 (636)
T ss_dssp SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH-TTCTTCCEEECCSCC
T ss_pred ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh-ccCCCCCEEeCcCCc
Confidence 4688 99999999999999997 87 489999887 999999999999999998 77 999999999999875
Q ss_pred CccccchhHhhcccccccceEEEeccCcccccccccccc-cccccccccc-c------------eeEeecCCCcccc---
Q 036143 71 ETSRETVQEAARSSDRLDTFVGYFSKLDDFNTYVKSSDG-QRSKHFHFQV-S------------TVYNGSAANTRFY--- 133 (355)
Q Consensus 71 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~-L~~L~~~~~~-~------------~~~~~~~~~~~~~--- 133 (355)
.. ..++ .++.+++|++|++..+.....+..+..+.. |+.|....+. . .+....++++...
T Consensus 342 l~--g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 342 LE--GKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp CE--EECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred Cc--cchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcc
Confidence 42 1445 788899999999887777666666777777 7777633221 0 1122222222110
Q ss_pred -ceec-------ccCCccEEEEeccCCccCCCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEee
Q 036143 134 -SFLR-------TREANKSVCFYGCKICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWF 204 (355)
Q Consensus 134 -~~l~-------~~~~~~~~~L~~l~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l 204 (355)
..+. ....++.+.+.++.+.......+..++.|+.| +.++ .++.++.... .........+++|+.|++
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N--~l~~i~~~~~-~~~~~~~~~l~~L~~L~L 495 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN--MLTEIPKNSL-KDENENFKNTYLLTSIDL 495 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS--CCSBCCSSSS-EETTEECTTGGGCCEEEC
T ss_pred hhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC--CCCCcCHHHh-ccccccccccCCccEEEC
Confidence 1111 11122333334433332211111122334444 4443 2222221000 000000012238889999
Q ss_pred ccCCCccccchHHHHh--hcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccc------ccce
Q 036143 205 SYCPNLQKLFSLQLLA--ALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLP------ELKS 276 (355)
Q Consensus 205 ~~~~~l~~~~~~~~l~--~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~~ 276 (355)
+++ +++.+.. . +. .+++|+.|+++++... .++. .+..+++|++|++++++ ..+.
T Consensus 496 s~N-~l~~lp~-~-~~~~~l~~L~~L~Ls~N~l~-~ip~--------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 496 RFN-KLTKLSD-D-FRATTLPYLVGIDLSYNSFS-KFPT--------------QPLNSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp CSS-CCCBCCG-G-GSTTTCTTCCEEECCSSCCS-SCCC--------------GGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred cCC-cCCccCh-h-hhhccCCCcCEEECCCCCCC-CcCh--------------hhhcCCCCCEEECCCCcccccCccccc
Confidence 888 4554332 2 33 7889999999875543 3654 66789999999996533 3344
Q ss_pred ecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEehhhhhccc
Q 036143 277 VCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRKELWESL 335 (355)
Q Consensus 277 i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~~~~~~l 335 (355)
++. ....+++|++|++. +|. ++.+|..+. ++|+.+++..+-+..+
T Consensus 558 ~p~--~l~~l~~L~~L~Ls-~N~-l~~ip~~~~----------~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 558 WPE--GITLCPSLTQLQIG-SND-IRKVNEKIT----------PNISVLDIKDNPNISI 602 (636)
T ss_dssp CCT--TGGGCSSCCEEECC-SSC-CCBCCSCCC----------TTCCEEECCSCTTCEE
T ss_pred ChH--HHhcCCCCCEEECC-CCc-CCccCHhHh----------CcCCEEECcCCCCccc
Confidence 444 23336799999997 664 488887653 3899999976655544
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.77 E-value=1.7e-18 Score=169.55 Aligned_cols=109 Identities=14% Similarity=0.165 Sum_probs=51.0
Q ss_pred CCCCC-ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+.. ++++|++++|.++.+ |..++++++|++|++++|.+..++...|+++++|++|+++++.. ......
T Consensus 24 l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~- 99 (606)
T 3t6q_A 24 LNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL-IFMAET- 99 (606)
T ss_dssp CSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-SEECTT-
T ss_pred cccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc-cccChh-
Confidence 34455 4432 455555555555544 34455555555555555555444222225555555555555432 111122
Q ss_pred hhcccccccceEEEeccCccc-cccccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDF-NTYVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~ 114 (355)
.++.+++|++|++..+..... ...++.++.|+.|.
T Consensus 100 ~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred hhcccccccEeeccccCcccCCcchhccCCcccEEE
Confidence 455555555555544444433 12344444444444
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.76 E-value=4e-18 Score=166.94 Aligned_cols=92 Identities=15% Similarity=0.080 Sum_probs=51.5
Q ss_pred ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
.++++++|++|++++|.++.+ |..++++.+|++|++++|.+..+|...++++++|++|+++++... ...++..+++++
T Consensus 75 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~lp~~~~~l~ 153 (606)
T 3vq2_A 75 AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH-SCKLPAYFSNLT 153 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCC-CCCCCGGGGTCT
T ss_pred HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccc-ceechHhHhhcC
Confidence 455566666666666655544 555566666666666666555555222266666666666654332 112232677777
Q ss_pred cccceEEEeccCcc
Q 036143 86 RLDTFVGYFSKLDD 99 (355)
Q Consensus 86 ~L~~L~l~~~~~~~ 99 (355)
+|++|++..+....
T Consensus 154 ~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 154 NLVHVDLSYNYIQT 167 (606)
T ss_dssp TCCEEECCSSCCCE
T ss_pred CCCEEEccCCccee
Confidence 77777776555443
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.76 E-value=5.6e-18 Score=160.74 Aligned_cols=279 Identities=14% Similarity=0.191 Sum_probs=153.3
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccc-------
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSR------- 74 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~------- 74 (355)
++.+|.++++++|++|++++|.+..+|. ++++++|++|++++|.+..+|. + +++++|++|+++++.....
T Consensus 80 l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~l~~n~l~~~~~~~~l~ 156 (466)
T 1o6v_A 80 LTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-L-KNLTNLNRLELSSNTISDISALSGLT 156 (466)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCSEEEEEEEEECCCGGGTTCT
T ss_pred cCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-H-cCCCCCCEEECCCCccCCChhhccCC
Confidence 4455567778888888888888777765 7888888888888887777765 4 7778888888776543111
Q ss_pred -----------cchhHhhcccccccceEEEeccCcccccccccccccccccccccc----------ceeEeecCCCccc-
Q 036143 75 -----------ETVQEAARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQV----------STVYNGSAANTRF- 132 (355)
Q Consensus 75 -----------~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~----------~~~~~~~~~~~~~- 132 (355)
..++ .++.+++|++|++..+..... ..+..++.|+.|....+. ..+....++++..
T Consensus 157 ~L~~L~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 157 SLQQLSFGNQVTDLK-PLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK 234 (466)
T ss_dssp TCSEEEEEESCCCCG-GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cccEeecCCcccCch-hhccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcc
Confidence 1122 366777888888876665543 235566666666522110 0011111111110
Q ss_pred -cceecccCCccEEEEeccCCccCCCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCc
Q 036143 133 -YSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNL 210 (355)
Q Consensus 133 -~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l 210 (355)
...+.....++.+.+.++.+.+... +..++.|+.| +.++ .++.++. ...+++|+.|+++++ ++
T Consensus 235 ~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n--~l~~~~~----------~~~l~~L~~L~L~~n-~l 299 (466)
T 1o6v_A 235 DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN--QISNISP----------LAGLTALTNLELNEN-QL 299 (466)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS--CCCCCGG----------GTTCTTCSEEECCSS-CC
T ss_pred cchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCC--ccCcccc----------ccCCCccCeEEcCCC-cc
Confidence 0111112223333333333332211 1223333333 3332 1111111 135667777777776 44
Q ss_pred cccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCce
Q 036143 211 QKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQ 290 (355)
Q Consensus 211 ~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~ 290 (355)
+.+.+ +..+++|+.|++++|. +..+. .+..+++|++|++.++. +..+. ....+++|+
T Consensus 300 ~~~~~---~~~l~~L~~L~L~~n~-l~~~~---------------~~~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~ 356 (466)
T 1o6v_A 300 EDISP---ISNLKNLTYLTLYFNN-ISDIS---------------PVSSLTKLQRLFFYNNK-VSDVS---SLANLTNIN 356 (466)
T ss_dssp SCCGG---GGGCTTCSEEECCSSC-CSCCG---------------GGGGCTTCCEEECCSSC-CCCCG---GGTTCTTCC
T ss_pred cCchh---hcCCCCCCEEECcCCc-CCCch---------------hhccCccCCEeECCCCc-cCCch---hhccCCCCC
Confidence 44333 4567777777777654 32322 34577888888888773 44442 122356888
Q ss_pred EEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEehhhhhcc
Q 036143 291 EIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRKELWES 334 (355)
Q Consensus 291 ~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~~~~~~ 334 (355)
.|++. +|.--...| +..++ +|+.+++..+.|..
T Consensus 357 ~L~l~-~n~l~~~~~--~~~l~--------~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 357 WLSAG-HNQISDLTP--LANLT--------RITQLGLNDQAWTN 389 (466)
T ss_dssp EEECC-SSCCCBCGG--GTTCT--------TCCEEECCCEEEEC
T ss_pred EEeCC-CCccCccch--hhcCC--------CCCEEeccCCcccC
Confidence 88887 765433333 44443 88888886555544
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.76 E-value=4e-18 Score=161.03 Aligned_cols=266 Identities=18% Similarity=0.174 Sum_probs=152.7
Q ss_pred ccccccccceecCCCcccc-cc-CcccccCcccceecccCcccccc-cchhhhcCCCcceeeecccCCccccchh-Hhhc
Q 036143 7 SLAKLLALQCLDLEYTAIK-EV-PEGMEMLENLVHLTIYSKMLIKF-PAGILPKLCNLYSLRLNWGSETSRETVQ-EAAR 82 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~-~l-P~~i~~L~~L~~L~l~~~~~~~l-P~~i~~~L~~L~~L~l~~~~~~~~~~~~-~~l~ 82 (355)
.++++++|++|++++|.+. .+ |..++.+++|++|++++|.+..+ |..+ +++++|++|++++|... +..+. ..++
T Consensus 49 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~-~~~~~~~~~~ 126 (455)
T 3v47_A 49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF-NGLANLEVLTLTQCNLD-GAVLSGNFFK 126 (455)
T ss_dssp TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT-TTCTTCCEEECTTSCCB-THHHHSSTTT
T ss_pred HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc-cCcccCCEEeCCCCCCC-ccccCccccc
Confidence 6778888888888888665 55 45578888888888888877766 4445 88888888888876442 21122 1277
Q ss_pred ccccccceEEEeccCcccc-cc-cccccccccccccccc-----------------------------------------
Q 036143 83 SSDRLDTFVGYFSKLDDFN-TY-VKSSDGQRSKHFHFQV----------------------------------------- 119 (355)
Q Consensus 83 ~L~~L~~L~l~~~~~~~~~-~~-~~~l~~L~~L~~~~~~----------------------------------------- 119 (355)
.+++|++|++..+...... .. ++.++.|+.|....+-
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 206 (455)
T 3v47_A 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206 (455)
T ss_dssp TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC
T ss_pred CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccc
Confidence 8888888888777665543 22 5666666666533221
Q ss_pred -----ceeEeecCCCccccc----eecc---------------------------------------cCCccEEEEeccC
Q 036143 120 -----STVYNGSAANTRFYS----FLRT---------------------------------------REANKSVCFYGCK 151 (355)
Q Consensus 120 -----~~~~~~~~~~~~~~~----~l~~---------------------------------------~~~~~~~~L~~l~ 151 (355)
..+....++++.... .+.. ...++.+.+.++.
T Consensus 207 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286 (455)
T ss_dssp CTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred cccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc
Confidence 011111111111000 0000 0011112222222
Q ss_pred CccCCCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEE
Q 036143 152 ICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVV 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l 230 (355)
+.+..+..+..+++|+.| +.++ .++.+.. .....+++|++|+++++ +++...+.. +..+++|+.|++
T Consensus 287 l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L 354 (455)
T 3v47_A 287 IFALLKSVFSHFTDLEQLTLAQN--EINKIDD--------NAFWGLTHLLKLNLSQN-FLGSIDSRM-FENLDKLEVLDL 354 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECTTS--CCCEECT--------TTTTTCTTCCEEECCSS-CCCEECGGG-GTTCTTCCEEEC
T ss_pred ccccchhhcccCCCCCEEECCCC--cccccCh--------hHhcCcccCCEEECCCC-ccCCcChhH-hcCcccCCEEEC
Confidence 211111111222333333 3332 1111110 01246789999999999 566654433 678999999999
Q ss_pred ecCCCCcee-cccCcchhhhhcccccccccCcccceeecccccccceecCCCcee-cCCCceEEEEcCCCCcccccc
Q 036143 231 QSCNRNEEI-VEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVL-ICNSLQEIQITPSCPKLKRLS 305 (355)
Q Consensus 231 ~~~~~l~~i-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l-~~~~L~~L~i~~~c~~L~~lp 305 (355)
+++.. ..+ +. .+..+++|++|+++++ .++.++. ..+ .+++|++|++. +++--...|
T Consensus 355 s~N~l-~~~~~~--------------~~~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~l~-~N~l~~~~~ 412 (455)
T 3v47_A 355 SYNHI-RALGDQ--------------SFLGLPNLKELALDTN-QLKSVPD--GIFDRLTSLQKIWLH-TNPWDCSCP 412 (455)
T ss_dssp CSSCC-CEECTT--------------TTTTCTTCCEEECCSS-CCSCCCT--TTTTTCTTCCEEECC-SSCBCCCTT
T ss_pred CCCcc-cccChh--------------hccccccccEEECCCC-ccccCCH--hHhccCCcccEEEcc-CCCcccCCC
Confidence 98754 444 33 6778999999999997 4666655 332 36799999997 654433333
No 26
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.76 E-value=1.6e-18 Score=174.38 Aligned_cols=107 Identities=15% Similarity=0.072 Sum_probs=62.4
Q ss_pred ccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 194 AKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 194 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
+.+++|++|+++++. +....+.. +..+++|+.|+++++.....++. .+..+++|++|++.++..
T Consensus 439 ~~l~~L~~L~L~~n~-l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~--------------~l~~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNM-LEGEIPQE-LMYVKTLETLILDFNDLTGEIPS--------------GLSNCTNLNWISLSNNRL 502 (768)
T ss_dssp GGCTTCCEEECCSSC-CCSCCCGG-GGGCTTCCEEECCSSCCCSCCCG--------------GGGGCTTCCEEECCSSCC
T ss_pred hcCCCCCEEECCCCc-ccCcCCHH-HcCCCCceEEEecCCcccCcCCH--------------HHhcCCCCCEEEccCCcc
Confidence 345666677776663 33222222 45666677777766554444443 556677777777777654
Q ss_pred cceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEe
Q 036143 274 LKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKI 327 (355)
Q Consensus 274 l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~ 327 (355)
.+.++. ....+++|++|++. +|.-...+|..+..++ +|+.+++
T Consensus 503 ~~~~p~--~~~~l~~L~~L~L~-~N~l~~~~p~~l~~l~--------~L~~L~L 545 (768)
T 3rgz_A 503 TGEIPK--WIGRLENLAILKLS-NNSFSGNIPAELGDCR--------SLIWLDL 545 (768)
T ss_dssp CSCCCG--GGGGCTTCCEEECC-SSCCEEECCGGGGGCT--------TCCEEEC
T ss_pred CCcCCh--HHhcCCCCCEEECC-CCcccCcCCHHHcCCC--------CCCEEEC
Confidence 434444 22234577777776 6655556676665554 6777766
No 27
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.75 E-value=2.4e-18 Score=172.94 Aligned_cols=90 Identities=21% Similarity=0.291 Sum_probs=45.4
Q ss_pred CCC-c-cccccccceecCCCcccc-ccCcccccCc-ccceecccCcccc-cccchhhhc--CCCcceeeecccCCccccc
Q 036143 4 RVP-S-LAKLLALQCLDLEYTAIK-EVPEGMEMLE-NLVHLTIYSKMLI-KFPAGILPK--LCNLYSLRLNWGSETSRET 76 (355)
Q Consensus 4 ~lP-~-i~~l~~L~~L~L~~~~~~-~lP~~i~~L~-~L~~L~l~~~~~~-~lP~~i~~~--L~~L~~L~l~~~~~~~~~~ 76 (355)
.+| . ++++++|++|++++|.+. .+|..++++. +|++|++++|.+. .+|..+ .. +++|++|++++|.. .+..
T Consensus 333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~-~~~~~~~L~~L~L~~n~l-~~~~ 410 (768)
T 3rgz_A 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL-CQNPKNTLQELYLQNNGF-TGKI 410 (768)
T ss_dssp ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT-TCSTTCCCCEEECCSSEE-EEEC
T ss_pred cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh-hhcccCCccEEECCCCcc-cccc
Confidence 355 3 666666666666666665 5666666555 5666666655443 233333 33 44455555544322 1112
Q ss_pred hhHhhcccccccceEEEecc
Q 036143 77 VQEAARSSDRLDTFVGYFSK 96 (355)
Q Consensus 77 ~~~~l~~L~~L~~L~l~~~~ 96 (355)
+. .++.+++|++|++..+.
T Consensus 411 p~-~l~~l~~L~~L~Ls~N~ 429 (768)
T 3rgz_A 411 PP-TLSNCSELVSLHLSFNY 429 (768)
T ss_dssp CG-GGGGCTTCCEEECCSSE
T ss_pred CH-HHhcCCCCCEEECcCCc
Confidence 22 44445555555544443
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=1.1e-18 Score=157.02 Aligned_cols=92 Identities=12% Similarity=-0.029 Sum_probs=62.9
Q ss_pred ccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 194 AKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 194 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
..+++|+.|+++++. ++...+. +..+++|++|+++++.....++. .+..+++|++|+++++.-
T Consensus 218 ~~l~~L~~L~L~~N~-l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~--------------~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNS-LAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQ--------------GLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp CTTSCCSEEECCSSE-ECCBGGG--CCCCTTCCEEECCSSCCEECCCG--------------GGGGCTTCCEEECCSSEE
T ss_pred hcCCCCCEEECCCCc-eeeecCc--ccccCCCCEEECcCCcccCcCCh--------------HHhcCcCCCEEECcCCcc
Confidence 467788888888883 4432222 46678888888887665445554 667888888888888865
Q ss_pred cceecCCCceecCCCceEEEEcCCCCccccccC
Q 036143 274 LKSVCSDNAVLICNSLQEIQITPSCPKLKRLSL 306 (355)
Q Consensus 274 l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~ 306 (355)
-+.++.. ..+++|+.+++. +++.+-..|.
T Consensus 281 ~~~ip~~---~~l~~L~~l~l~-~N~~lc~~p~ 309 (313)
T 1ogq_A 281 CGEIPQG---GNLQRFDVSAYA-NNKCLCGSPL 309 (313)
T ss_dssp EEECCCS---TTGGGSCGGGTC-SSSEEESTTS
T ss_pred cccCCCC---ccccccChHHhc-CCCCccCCCC
Confidence 5566652 335578888887 7776766553
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=4.4e-18 Score=160.80 Aligned_cols=101 Identities=17% Similarity=0.128 Sum_probs=83.7
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.+|.++.+++|++|++++|.++.+| ++.+++|++|++++|.+..+| + +++++|++|+++++... .+ .+
T Consensus 54 l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-~~l~~L~~L~L~~N~l~---~l--~~ 123 (457)
T 3bz5_A 54 ITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V-TPLTKLTYLNCDTNKLT---KL--DV 123 (457)
T ss_dssp CCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C-TTCTTCCEEECCSSCCS---CC--CC
T ss_pred cccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c-CCCCcCCEEECCCCcCC---ee--cC
Confidence 567788999999999999999999886 899999999999999999886 5 99999999999987542 23 38
Q ss_pred cccccccceEEEeccCccccccccccccccccc
Q 036143 82 RSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
+.+++|++|++..+..... .++.++.|+.|.
T Consensus 124 ~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~ 154 (457)
T 3bz5_A 124 SQNPLLTYLNCARNTLTEI--DVSHNTQLTELD 154 (457)
T ss_dssp TTCTTCCEEECTTSCCSCC--CCTTCTTCCEEE
T ss_pred CCCCcCCEEECCCCcccee--ccccCCcCCEEE
Confidence 8899999999987776654 366666676666
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=160.52 Aligned_cols=107 Identities=16% Similarity=0.094 Sum_probs=88.4
Q ss_pred CCCCCC-ccccccccceecCCCccccccC-cccccCcccceecccCccccccc-chhhhcCCCcceeeecccCCccccch
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFP-AGILPKLCNLYSLRLNWGSETSRETV 77 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP-~~i~~~L~~L~~L~l~~~~~~~~~~~ 77 (355)
+|+.+| .+. ++|++|++++|.++.+| ..++++.+|++|++++|.+..++ ..+ +++++|++|+++++.. ..+
T Consensus 11 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l---~~l 84 (520)
T 2z7x_B 11 GLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNKL---VKI 84 (520)
T ss_dssp CCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGG-TTCTTCCEEECCSSCC---CEE
T ss_pred Cccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHh-hcccCCCEEecCCCce---eec
Confidence 467899 676 89999999999999876 57899999999999999999884 455 9999999999999755 245
Q ss_pred hHhhcccccccceEEEeccCcc--cccccccccccccccc
Q 036143 78 QEAARSSDRLDTFVGYFSKLDD--FNTYVKSSDGQRSKHF 115 (355)
Q Consensus 78 ~~~l~~L~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~~ 115 (355)
+ .. .+++|++|+++.+.... .+..++.++.|+.|..
T Consensus 85 p-~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L 122 (520)
T 2z7x_B 85 S-CH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122 (520)
T ss_dssp E-CC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEE
T ss_pred C-cc-ccCCccEEeccCCccccccchhhhccCCcceEEEe
Confidence 5 33 89999999999888765 3366788888887764
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.74 E-value=7.5e-18 Score=162.98 Aligned_cols=107 Identities=16% Similarity=0.109 Sum_probs=71.3
Q ss_pred ccccccccceecCCCccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
+++++++|++|++++|.++.+| ..++.+.+|++|++++|.+..+|...++++++|++|+++++........+ .++.++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~ 123 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLT 123 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccC
Confidence 6788888888888888887664 56788888888888888888877764488888888888876432211122 566777
Q ss_pred cccceEEEecc-Ccccc-ccccccccccccc
Q 036143 86 RLDTFVGYFSK-LDDFN-TYVKSSDGQRSKH 114 (355)
Q Consensus 86 ~L~~L~l~~~~-~~~~~-~~~~~l~~L~~L~ 114 (355)
+|++|++..+. ....+ ..++.++.|+.|.
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 154 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeee
Confidence 77777776654 22222 2344444444444
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=1.9e-17 Score=156.38 Aligned_cols=109 Identities=15% Similarity=0.123 Sum_probs=79.5
Q ss_pred CCCCC-ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+. .++++|+|++|+++.+ |..++++.+|++|++++|.+..++.+.|+++++|++|+++++.. ......
T Consensus 66 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~- 141 (452)
T 3zyi_A 66 LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL-TVIPSG- 141 (452)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SBCCTT-
T ss_pred cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC-CccChh-
Confidence 55677 554 6888889988888866 56688888899999988888887755458888899998887643 222222
Q ss_pred hhcccccccceEEEeccCccccc-cccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 114 (355)
.++.+++|++|++..+.+..... .+..++.|+.|.
T Consensus 142 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 57788888888888777665543 356666666666
No 33
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=155.51 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=78.8
Q ss_pred CCCCC-ccccccccceecCCCccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+. .++++|+|++|+++.++ ..++++.+|++|++++|.+..++.+.|.++++|++|+++++.. ......
T Consensus 55 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~- 130 (440)
T 3zyj_A 55 LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL-TTIPNG- 130 (440)
T ss_dssp CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC-SSCCTT-
T ss_pred cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC-CeeCHh-
Confidence 56677 554 67888888888888664 5678888888888888888887765558888888888887643 222222
Q ss_pred hhcccccccceEEEeccCccccc-cccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 114 (355)
.+..+++|++|++..+.+..... .+..++.|+.|.
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred HhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence 57888888888887777665543 356666666666
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.73 E-value=3.4e-17 Score=158.99 Aligned_cols=108 Identities=15% Similarity=0.149 Sum_probs=88.7
Q ss_pred CCCCCC-ccccccccceecCCCccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
+++.+| .+. .+|++|++++|.++.+| ..++++++|++|++++|.+..++.+.|+++++|++|+++++.. ..++
T Consensus 42 ~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~lp 116 (562)
T 3a79_B 42 NLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL---QNIS 116 (562)
T ss_dssp CCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC---CEEC
T ss_pred CCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC---CccC
Confidence 367888 664 89999999999999886 5799999999999999999998555449999999999999765 3455
Q ss_pred HhhcccccccceEEEeccCcccc--cccccccccccccc
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFN--TYVKSSDGQRSKHF 115 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~~ 115 (355)
.. .+++|++|+++.+...... ..++.++.|+.|..
T Consensus 117 -~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L 153 (562)
T 3a79_B 117 -CC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153 (562)
T ss_dssp -SC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEE
T ss_pred -cc-ccccCCEEECCCCCccccCchHhhcccCcccEEec
Confidence 33 8999999999988877643 56788888887774
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=2e-17 Score=162.36 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=50.3
Q ss_pred ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
+|.++++|++|+|++|.++.+|. .+++|++|++|++++|.++.+|.+.|+++++|++|+++++.. ...... .++.++
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l-~~l~~~-~~~~L~ 148 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENF-PIGHLK 148 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC-CCSTTC-CCTTCT
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC-CCCChh-hhhcCc
Confidence 45555555555555555555533 245555555555555555555544445555555555555432 111111 345555
Q ss_pred cccceEEEeccCccc--cccccccccccccc
Q 036143 86 RLDTFVGYFSKLDDF--NTYVKSSDGQRSKH 114 (355)
Q Consensus 86 ~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~ 114 (355)
+|++|++..+..... +..++.++.|+.|.
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred ccCeeccccCccccCCCchhhccchhhhhhc
Confidence 555555554443321 23344444444444
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.73 E-value=2.6e-17 Score=163.35 Aligned_cols=58 Identities=24% Similarity=0.181 Sum_probs=32.3
Q ss_pred CCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccc
Q 036143 197 SHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSF 270 (355)
Q Consensus 197 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 270 (355)
++|++|+++++ +++...+. .++.+++|+.|+++++......+. .+..+++|++|++.+
T Consensus 248 ~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~--------------~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 248 TNLTMLDLSYN-NLNVVGND-SFAWLPQLEYFFLEYNNIQHLFSH--------------SLHGLFNVRYLNLKR 305 (680)
T ss_dssp SCCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSCCBSEECTT--------------TTTTCTTCCEEECTT
T ss_pred CCCCEEECCCC-CcCccCcc-cccCcccccEeeCCCCccCccChh--------------hhcCCCCccEEeccc
Confidence 34777777777 34443322 256677777777776543322222 445566666666654
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.72 E-value=1.6e-17 Score=150.59 Aligned_cols=269 Identities=14% Similarity=0.071 Sum_probs=143.9
Q ss_pred cccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceE
Q 036143 12 LALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFV 91 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~ 91 (355)
.++++++++++.++.+|..+. .+|++|++++|.+..+|...++++++|++|+++++.. ...... .++.+++|++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI-SKIHEK-AFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECGG-GSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc-CccCHh-HhhCcCCCCEEE
Confidence 367888888888888887664 5788888888877777654338888888888887543 223233 677888888888
Q ss_pred EEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCcc--CCCccccCchhHHHH
Q 036143 92 GYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICE--REGVTIVLPKDVQGL 169 (355)
Q Consensus 92 l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~--~~~~~~~~~~~L~~L 169 (355)
+..+.....+..+. +.|+.|. +....+... ....+.....++.+.+.++.+.. .....+..+ .|+.|
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~-------l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELR-------IHDNRIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEE-------CCSSCCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred CCCCcCCccCcccc--ccCCEEE-------CCCCccCcc-CHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 87766655544433 4555555 111122211 11112223445555666655532 111111112 44444
Q ss_pred -HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhh
Q 036143 170 -IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQ 248 (355)
Q Consensus 170 -l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~ 248 (355)
+.++ .++ .++. ..+++|++|+++++ .++...+. .+..+++|+.|+++++. +..+..
T Consensus 178 ~l~~n--~l~---~l~~--------~~~~~L~~L~l~~n-~i~~~~~~-~l~~l~~L~~L~L~~N~-l~~~~~------- 234 (332)
T 2ft3_A 178 RISEA--KLT---GIPK--------DLPETLNELHLDHN-KIQAIELE-DLLRYSKLYRLGLGHNQ-IRMIEN------- 234 (332)
T ss_dssp BCCSS--BCS---SCCS--------SSCSSCSCCBCCSS-CCCCCCTT-SSTTCTTCSCCBCCSSC-CCCCCT-------
T ss_pred ECcCC--CCC---ccCc--------cccCCCCEEECCCC-cCCccCHH-HhcCCCCCCEEECCCCc-CCcCCh-------
Confidence 4443 122 2221 22356777777776 34443322 24566777777777543 333321
Q ss_pred hhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCC-CCCCCCCCCCCCCeeEEEe
Q 036143 249 KELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRL-PPLDNGQPSPSPALEVIKI 327 (355)
Q Consensus 249 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~-~~l~~~~~~~~~~L~~l~~ 327 (355)
..+..+++|++|+++++ .+..++. +...+++|++|++. ++ .++.+|... .... .....++|+.+++
T Consensus 235 ------~~~~~l~~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~-~N-~l~~~~~~~~~~~~--~~~~~~~l~~L~l 301 (332)
T 2ft3_A 235 ------GSLSFLPTLRELHLDNN-KLSRVPA--GLPDLKLLQVVYLH-TN-NITKVGVNDFCPVG--FGVKRAYYNGISL 301 (332)
T ss_dssp ------TGGGGCTTCCEEECCSS-CCCBCCT--TGGGCTTCCEEECC-SS-CCCBCCTTSSSCSS--CCSSSCCBSEEEC
T ss_pred ------hHhhCCCCCCEEECCCC-cCeecCh--hhhcCccCCEEECC-CC-CCCccChhHccccc--cccccccccceEe
Confidence 04456677777777766 3555544 33335677777775 43 455554322 1110 0011346667766
Q ss_pred hhhh
Q 036143 328 RKEL 331 (355)
Q Consensus 328 ~~~~ 331 (355)
..+-
T Consensus 302 ~~N~ 305 (332)
T 2ft3_A 302 FNNP 305 (332)
T ss_dssp CSSS
T ss_pred ecCc
Confidence 4443
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=161.20 Aligned_cols=68 Identities=21% Similarity=0.284 Sum_probs=53.7
Q ss_pred CCCCC--ccccccccceecCCCccccccCc-ccccCcccceecccCccccc--ccchhhhcCCCcceeeecccC
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIK--FPAGILPKLCNLYSLRLNWGS 70 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~--lP~~i~~~L~~L~~L~l~~~~ 70 (355)
++.+| .++.+++|++|++++|.++.+|. .++++.+|++|++++|.+.. +|..+ +++++|++|+++++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNK 160 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSC
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCc
Confidence 34444 67888888888888888887765 57888888888888887775 67777 888888888888764
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=4.5e-17 Score=159.40 Aligned_cols=143 Identities=13% Similarity=0.103 Sum_probs=103.7
Q ss_pred CCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+. .++++|++++|.++.+|. .++++++|++|++++|.+..++...|+++++|++|+++++.. ....+.
T Consensus 23 l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~p~- 98 (606)
T 3vq2_A 23 LSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI-QSFSPG- 98 (606)
T ss_dssp CSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CCCCTT-
T ss_pred cccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc-cccChh-
Confidence 66788 554 789999999998887755 688999999999999988887555448999999999988653 333334
Q ss_pred hhcccccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccC
Q 036143 80 AARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICER 155 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~ 155 (355)
.++++++|++|++..+...... ..++.+..|+.|. +....+.+...+..+.....++.+.++++.+.+.
T Consensus 99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-------L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN-------VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE-------CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred hcCCcccCCEEEccCCccccccccccCCCCCCCEEe-------CCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 7888999999999877776655 4577778888777 3333343333455555566777777777776653
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=1.6e-18 Score=155.82 Aligned_cols=243 Identities=15% Similarity=0.086 Sum_probs=149.1
Q ss_pred cccceecCCCcccc---ccCcccccCcccceecccC-cccc-cccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 12 LALQCLDLEYTAIK---EVPEGMEMLENLVHLTIYS-KMLI-KFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 12 ~~L~~L~L~~~~~~---~lP~~i~~L~~L~~L~l~~-~~~~-~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
.++++|++++|.+. .+|..++++++|++|++++ |.+. .+|..+ +++++|++|+++++.. .+..+. .++.+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l-~~~~p~-~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNV-SGAIPD-FLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECC-EEECCG-GGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCee-CCcCCH-HHhCCCC
Confidence 56788888888776 5788888888888888885 5555 577777 8888888888887643 223333 6788888
Q ss_pred ccceEEEeccCcc-ccccccccccccccccccccceeEeecCCCccccceecccC-CccEEEEeccCCccCCCccccCch
Q 036143 87 LDTFVGYFSKLDD-FNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTRE-ANKSVCFYGCKICEREGVTIVLPK 164 (355)
Q Consensus 87 L~~L~l~~~~~~~-~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~L~~l~~~~~~~~~~~~~~ 164 (355)
|++|++..+.... .+..++.++.|+.|....+ .+.+. .+..+.... .++.+.+.++.+.+.
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-------~l~~~-~p~~l~~l~~~L~~L~L~~N~l~~~--------- 189 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-------RISGA-IPDSYGSFSKLFTSMTISRNRLTGK--------- 189 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-------CCEEE-CCGGGGCCCTTCCEEECCSSEEEEE---------
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-------cccCc-CCHHHhhhhhcCcEEECcCCeeecc---------
Confidence 8888887666653 4455666677766662111 11100 111122111 333344433333211
Q ss_pred hHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCc
Q 036143 165 DVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVND 244 (355)
Q Consensus 165 ~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~ 244 (355)
++... ..++ |++|+++++ .++...+. .+..+++|+.|+++++.....++
T Consensus 190 ---------------~~~~~---------~~l~-L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~---- 238 (313)
T 1ogq_A 190 ---------------IPPTF---------ANLN-LAFVDLSRN-MLEGDASV-LFGSDKNTQKIHLAKNSLAFDLG---- 238 (313)
T ss_dssp ---------------CCGGG---------GGCC-CSEEECCSS-EEEECCGG-GCCTTSCCSEEECCSSEECCBGG----
T ss_pred ---------------CChHH---------hCCc-ccEEECcCC-cccCcCCH-HHhcCCCCCEEECCCCceeeecC----
Confidence 01100 2333 889999888 45443332 26788999999998765433332
Q ss_pred chhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeE
Q 036143 245 EETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEV 324 (355)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~ 324 (355)
.+..+++|++|+++++..-+.++. ....+++|++|++. +|.--..+|.. ..+. +|+.
T Consensus 239 -----------~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls-~N~l~~~ip~~-~~l~--------~L~~ 295 (313)
T 1ogq_A 239 -----------KVGLSKNLNGLDLRNNRIYGTLPQ--GLTQLKFLHSLNVS-FNNLCGEIPQG-GNLQ--------RFDV 295 (313)
T ss_dssp -----------GCCCCTTCCEEECCSSCCEECCCG--GGGGCTTCCEEECC-SSEEEEECCCS-TTGG--------GSCG
T ss_pred -----------cccccCCCCEEECcCCcccCcCCh--HHhcCcCCCEEECc-CCcccccCCCC-cccc--------ccCh
Confidence 455788999999998854435544 23346799999998 77555577765 4443 7777
Q ss_pred EEeh
Q 036143 325 IKIR 328 (355)
Q Consensus 325 l~~~ 328 (355)
+++.
T Consensus 296 l~l~ 299 (313)
T 1ogq_A 296 SAYA 299 (313)
T ss_dssp GGTC
T ss_pred HHhc
Confidence 6663
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.72 E-value=4.4e-17 Score=165.42 Aligned_cols=106 Identities=20% Similarity=0.197 Sum_probs=70.2
Q ss_pred ccccccccceecCCCc-ccccc-CcccccCcccceecccCcccccc-cchhhhcCCCcceeeecccCCccccchh-Hhhc
Q 036143 7 SLAKLLALQCLDLEYT-AIKEV-PEGMEMLENLVHLTIYSKMLIKF-PAGILPKLCNLYSLRLNWGSETSRETVQ-EAAR 82 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~-~~~~l-P~~i~~L~~L~~L~l~~~~~~~l-P~~i~~~L~~L~~L~l~~~~~~~~~~~~-~~l~ 82 (355)
++.++++|++|++++| .+..+ |..++++.+|++|++++|.+..+ |..+ +++++|++|++++|... +..++ ..++
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~n~l~-~~~~~~~~~~ 120 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF-QGLFHLFELRLYFCGLS-DAVLKDGYFR 120 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS-CSCSSCCCEECTTCCCS-SCCSTTCCCS
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc-cCCcccCEeeCcCCCCC-cccccCcccc
Confidence 6777777777777777 44456 66677777788888877777766 4444 77778888887776432 21122 1377
Q ss_pred ccccccceEEEeccCcccc--ccccccccccccc
Q 036143 83 SSDRLDTFVGYFSKLDDFN--TYVKSSDGQRSKH 114 (355)
Q Consensus 83 ~L~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~ 114 (355)
.+++|++|+++.+...... ..++.++.|+.|.
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence 7778888887776665432 3466666776666
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.71 E-value=2.2e-16 Score=142.90 Aligned_cols=105 Identities=21% Similarity=0.268 Sum_probs=79.4
Q ss_pred CCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccc-cchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKF-PAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~l-P~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+| .+. .+|++|++++|.++.+|. .++++++|++|++++|.+..+ |..+ +++++|++|+++++... .++
T Consensus 43 l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~---~l~ 116 (330)
T 1xku_A 43 LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSKNQLK---ELP 116 (330)
T ss_dssp CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSCCS---BCC
T ss_pred ccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEEECCCCcCC---ccC
Confidence 56677 554 689999999999988865 689999999999999988887 5566 99999999999886542 233
Q ss_pred HhhcccccccceEEEeccCccccc-cccccccccccc
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKH 114 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 114 (355)
..+. ++|++|++..+....... .+..++.|+.|.
T Consensus 117 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 117 EKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVE 151 (330)
T ss_dssp SSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred hhhc--ccccEEECCCCcccccCHhHhcCCccccEEE
Confidence 2333 789999988777666543 366777777776
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.71 E-value=7e-17 Score=146.32 Aligned_cols=271 Identities=13% Similarity=0.114 Sum_probs=178.4
Q ss_pred CCCCC-ccccccccceecCCCcccccc-CcccccCcccceecccCcccccc-cchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKF-PAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~l-P~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+| .+. .+|++|++++|.++.+ |..++++.+|++|++++|.+..+ |..+ +++++|++|+++++... .++
T Consensus 45 l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~---~l~ 118 (332)
T 2ft3_A 45 LKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF-SPLRKLQKLYISKNHLV---EIP 118 (332)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS-TTCTTCCEEECCSSCCC---SCC
T ss_pred ccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh-hCcCCCCEEECCCCcCC---ccC
Confidence 56788 663 6999999999999987 45799999999999999999988 4555 99999999999987542 333
Q ss_pred HhhcccccccceEEEeccCccccc-cccccccccccccccccceeEeecCCCcc-ccceecccCCccEEEEeccCCccCC
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKHFHFQVSTVYNGSAANTR-FYSFLRTREANKSVCFYGCKICERE 156 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~L~~l~~~~~~ 156 (355)
..+. ++|++|++..+....... .++.++.|+.|... ...+.... .+..+... .++.+.+.++.+....
T Consensus 119 ~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 119 PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG-------GNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC-------SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECC-------CCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 2444 899999998888776654 37778888877722 21221100 11111111 2333444444443321
Q ss_pred CccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCC
Q 036143 157 GVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNR 235 (355)
Q Consensus 157 ~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~ 235 (355)
...++.|+.| +.++ .++.++.. ....+++|++|+++++ +++.+.+. .+..+++|+.|+++++ .
T Consensus 189 ---~~~~~~L~~L~l~~n--~i~~~~~~--------~l~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~ 252 (332)
T 2ft3_A 189 ---KDLPETLNELHLDHN--KIQAIELE--------DLLRYSKLYRLGLGHN-QIRMIENG-SLSFLPTLRELHLDNN-K 252 (332)
T ss_dssp ---SSSCSSCSCCBCCSS--CCCCCCTT--------SSTTCTTCSCCBCCSS-CCCCCCTT-GGGGCTTCCEEECCSS-C
T ss_pred ---ccccCCCCEEECCCC--cCCccCHH--------HhcCCCCCCEEECCCC-cCCcCChh-HhhCCCCCCEEECCCC-c
Confidence 1233567777 6664 22222210 1146789999999998 56654432 2678999999999976 4
Q ss_pred CceecccCcchhhhhcccccccccCcccceeecccccccceecCCC-ce----ecCCCceEEEEcCCCCcc--ccccCCC
Q 036143 236 NEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDN-AV----LICNSLQEIQITPSCPKL--KRLSLRL 308 (355)
Q Consensus 236 l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~-~~----l~~~~L~~L~i~~~c~~L--~~lp~~~ 308 (355)
+..++. .+..+++|++|+++++ .++.+.... .. ..+++|+.|.+. +++-. ...|..+
T Consensus 253 l~~lp~--------------~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~-~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 253 LSRVPA--------------GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLF-NNPVPYWEVQPATF 316 (332)
T ss_dssp CCBCCT--------------TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECC-SSSSCGGGSCGGGG
T ss_pred CeecCh--------------hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEee-cCcccccccCcccc
Confidence 556664 6778999999999987 466665421 11 115789999998 87744 2334445
Q ss_pred CCCCCCCCCCCCCeeEEEeh
Q 036143 309 PPLDNGQPSPSPALEVIKIR 328 (355)
Q Consensus 309 ~~l~~~~~~~~~~L~~l~~~ 328 (355)
..++ +|+.+++.
T Consensus 317 ~~l~--------~L~~l~l~ 328 (332)
T 2ft3_A 317 RCVT--------DRLAIQFG 328 (332)
T ss_dssp TTBC--------CSTTEEC-
T ss_pred cccc--------hhhhhhcc
Confidence 5444 77777763
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=1.4e-16 Score=145.58 Aligned_cols=259 Identities=14% Similarity=0.078 Sum_probs=157.5
Q ss_pred CCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+. .+|++|++++|.++.+|. .++++++|++|++++|.+..++.+.++++++|++|+++++.. ......
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~- 118 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSS- 118 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHH-
T ss_pred ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHh-
Confidence 56788 554 489999999999988876 688999999999999988888665449999999999988654 222222
Q ss_pred hhcccccccceEEEeccCccccc--cccccccccccccccccceeEeec-CCCccccceecccCCccEEEEeccCCccCC
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNT--YVKSSDGQRSKHFHFQVSTVYNGS-AANTRFYSFLRTREANKSVCFYGCKICERE 156 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~ 156 (355)
.++.+++|++|++..+.....+. .+..++.|+.|. +.... +... .+..+.....++.+.+.++.+.+..
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~-------l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR-------VGNMDTFTKI-QRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE-------EEESSSCCEE-CTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE-------CCCCcccccc-CHHHccCCCCCCEEECCCCCcCccC
Confidence 48889999999998777666554 466777777776 22221 1110 0111111222333334333332210
Q ss_pred CccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCC
Q 036143 157 GVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRN 236 (355)
Q Consensus 157 ~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l 236 (355)
+.. ...+++|++|+++++. ++.+ +......+++|+.|+++++...
T Consensus 191 ------------------------~~~---------l~~l~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 191 ------------------------PKS---------LKSIQNVSHLILHMKQ-HILL-LEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp ------------------------TTT---------TTTCSEEEEEEEECSC-STTH-HHHHHHHTTTEEEEEEESCBCT
T ss_pred ------------------------HHH---------HhccccCCeecCCCCc-cccc-hhhhhhhcccccEEECCCCccc
Confidence 000 1356789999999884 5543 3333566899999999876432
Q ss_pred ceecccCcchhhhhcccccccccCcccceeeccccccc----ceecCCCceecCCCceEEEEcCCCCccccccCCC-CCC
Q 036143 237 EEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPEL----KSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRL-PPL 311 (355)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l----~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~-~~l 311 (355)
.+.... .......+.++.+.+.++.-- ..++. ....+++|++|++. +| +++.+|.++ ..+
T Consensus 236 -~~~~~~----------l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~--~l~~l~~L~~L~Ls-~N-~l~~i~~~~~~~l 300 (353)
T 2z80_A 236 -TFHFSE----------LSTGETNSLIKKFTFRNVKITDESLFQVMK--LLNQISGLLELEFS-RN-QLKSVPDGIFDRL 300 (353)
T ss_dssp -TCCCC----------------CCCCCCEEEEESCBCCHHHHHHHHH--HHHTCTTCCEEECC-SS-CCCCCCTTTTTTC
T ss_pred -cccccc----------cccccccchhhccccccccccCcchhhhHH--HHhcccCCCEEECC-CC-CCCccCHHHHhcC
Confidence 221100 001223455666666655211 11221 11236789999996 55 677888765 555
Q ss_pred CCCCCCCCCCeeEEEehhh
Q 036143 312 DNGQPSPSPALEVIKIRKE 330 (355)
Q Consensus 312 ~~~~~~~~~~L~~l~~~~~ 330 (355)
+ +|+.+++..+
T Consensus 301 ~--------~L~~L~L~~N 311 (353)
T 2z80_A 301 T--------SLQKIWLHTN 311 (353)
T ss_dssp T--------TCCEEECCSS
T ss_pred C--------CCCEEEeeCC
Confidence 4 8888888433
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.71 E-value=7.6e-17 Score=156.53 Aligned_cols=125 Identities=14% Similarity=0.028 Sum_probs=66.5
Q ss_pred ccCCCccEEeeccCCCccccc-hHHHHhhcCCCCeEEEecCCCCceeccc--Ccchhh----hh-----cccccccccCc
Q 036143 194 AKFSHLKALWFSYCPNLQKLF-SLQLLAALQNLEFLVVQSCNRNEEIVEV--NDEETQ----KE-----LGISAITITLP 261 (355)
Q Consensus 194 ~~~~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~~L~l~~~~~l~~i~~~--~~~~~~----~~-----~~~~~~~~~~~ 261 (355)
..+++|++|+++++ +++... ....+..+++|++|+++++. +..++.. ...... .. ......+..++
T Consensus 344 ~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 344 VDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp CBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred ccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCC
Confidence 46778888888877 344332 12236678888888887654 2222210 000000 00 00012345666
Q ss_pred ccceeecccccccceecCCCceecCCCceEEEEcCCCCcc-ccccCCCCCCCCCCCCCCCCeeEEEehhhh
Q 036143 262 RLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKL-KRLSLRLPPLDNGQPSPSPALEVIKIRKEL 331 (355)
Q Consensus 262 ~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L-~~lp~~~~~l~~~~~~~~~~L~~l~~~~~~ 331 (355)
+|++|+++++......+. ....+++|++|++. +|.-. ..+|..+..++ +|+.+++..+.
T Consensus 422 ~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~-~n~l~~~~~p~~~~~l~--------~L~~L~l~~n~ 481 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNG--IFNGLSSLEVLKMA-GNSFQENFLPDIFTELR--------NLTFLDLSQCQ 481 (570)
T ss_dssp TCCEEECTTSCCEECCTT--TTTTCTTCCEEECT-TCEEGGGEECSCCTTCT--------TCCEEECTTSC
T ss_pred CCCEEeCcCCcccccchh--hhhcCCcCcEEECc-CCcCccccchhhhhccc--------CCCEEECCCCc
Confidence 777777776643222222 11225688888887 77544 35776665554 88888885443
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.70 E-value=1.2e-16 Score=144.63 Aligned_cols=272 Identities=14% Similarity=0.084 Sum_probs=178.1
Q ss_pred ccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccce
Q 036143 11 LLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTF 90 (355)
Q Consensus 11 l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 90 (355)
..++++++++++.++.+|..+. .+|++|++++|.+..+|...++++++|++|+++++.. ...... .++.+++|++|
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~~~l~~L~~L 105 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-SKISPG-AFAPLVKLERL 105 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-CCBCTT-TTTTCTTCCEE
T ss_pred cCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcC-CeeCHH-HhcCCCCCCEE
Confidence 4589999999999999998775 6899999999999999885459999999999998654 333334 89999999999
Q ss_pred EEEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCcc--CCCccccCchhHHH
Q 036143 91 VGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICE--REGVTIVLPKDVQG 168 (355)
Q Consensus 91 ~l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~--~~~~~~~~~~~L~~ 168 (355)
++..+.....+..+. +.|+.|. +....+.+. ....+.....++.+.+.++.+.. .....+..++.|+.
T Consensus 106 ~Ls~n~l~~l~~~~~--~~L~~L~-------l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 106 YLSKNQLKELPEKMP--KTLQELR-------VHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp ECCSSCCSBCCSSCC--TTCCEEE-------CCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred ECCCCcCCccChhhc--ccccEEE-------CCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 998887766554443 4566666 212222211 11123334566677777776643 11122233445555
Q ss_pred H-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchh
Q 036143 169 L-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEET 247 (355)
Q Consensus 169 L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~ 247 (355)
| +.++ .++ .++. ..+++|++|+++++ .++...+. .+..+++|+.|+++++. +..+..
T Consensus 176 L~l~~n--~l~---~l~~--------~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~------ 233 (330)
T 1xku_A 176 IRIADT--NIT---TIPQ--------GLPPSLTELHLDGN-KITKVDAA-SLKGLNNLAKLGLSFNS-ISAVDN------ 233 (330)
T ss_dssp EECCSS--CCC---SCCS--------SCCTTCSEEECTTS-CCCEECTG-GGTTCTTCCEEECCSSC-CCEECT------
T ss_pred EECCCC--ccc---cCCc--------cccccCCEEECCCC-cCCccCHH-HhcCCCCCCEEECCCCc-CceeCh------
Confidence 5 5553 222 2221 33478999999998 46554333 36788999999998765 344432
Q ss_pred hhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCC-CCCCCCCCCCCCCeeEEE
Q 036143 248 QKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRL-PPLDNGQPSPSPALEVIK 326 (355)
Q Consensus 248 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~-~~l~~~~~~~~~~L~~l~ 326 (355)
..+..+++|++|+++++ .+..++. +...+++|++|++. +| .++.+|... .... .....++++.++
T Consensus 234 -------~~~~~l~~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~-~N-~i~~~~~~~f~~~~--~~~~~~~l~~l~ 299 (330)
T 1xku_A 234 -------GSLANTPHLRELHLNNN-KLVKVPG--GLADHKYIQVVYLH-NN-NISAIGSNDFCPPG--YNTKKASYSGVS 299 (330)
T ss_dssp -------TTGGGSTTCCEEECCSS-CCSSCCT--TTTTCSSCCEEECC-SS-CCCCCCTTSSSCSS--CCTTSCCCSEEE
T ss_pred -------hhccCCCCCCEEECCCC-cCccCCh--hhccCCCcCEEECC-CC-cCCccChhhcCCcc--cccccccccceE
Confidence 15668899999999988 4666655 33346799999996 55 577776432 2110 001245788888
Q ss_pred ehhhhh
Q 036143 327 IRKELW 332 (355)
Q Consensus 327 ~~~~~~ 332 (355)
+..+.+
T Consensus 300 l~~N~~ 305 (330)
T 1xku_A 300 LFSNPV 305 (330)
T ss_dssp CCSSSS
T ss_pred eecCcc
Confidence 854443
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=2.5e-17 Score=147.41 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=59.0
Q ss_pred cCCCccEEeeccCCCccc-cchHHHHhhcCCCCeEEEecCCCCcee-cccCcchhhhhcccccccccCcccceeeccccc
Q 036143 195 KFSHLKALWFSYCPNLQK-LFSLQLLAALQNLEFLVVQSCNRNEEI-VEVNDEETQKELGISAITITLPRLKKLWLSFLP 272 (355)
Q Consensus 195 ~~~~L~~L~l~~~~~l~~-~~~~~~l~~L~~L~~L~l~~~~~l~~i-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 272 (355)
.+++|++|+++++. ++. ..+. .+..+++|+.|+++++. +..+ +. .+..+++|++|+++++.
T Consensus 148 ~l~~L~~L~l~~n~-l~~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~--------------~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 148 GLSSLEVLKMAGNS-FQENFLPD-IFTELRNLTFLDLSQCQ-LEQLSPT--------------AFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp TCTTCCEEECTTCE-EGGGEECS-CCTTCTTCCEEECTTSC-CCEECTT--------------TTTTCTTCCEEECTTSC
T ss_pred cCcCCCEEECCCCc-cccccchh-HHhhCcCCCEEECCCCC-cCCcCHH--------------HhcCCCCCCEEECCCCc
Confidence 45677777777763 332 1121 24567777777777654 3333 22 45567777777777763
Q ss_pred ccceecCCCcee-cCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEehh
Q 036143 273 ELKSVCSDNAVL-ICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRK 329 (355)
Q Consensus 273 ~l~~i~~~~~~l-~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~ 329 (355)
+..+.. ..+ .+++|++|++. +|.--...|..+..+ +++|+.+++..
T Consensus 211 -l~~~~~--~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~~-------~~~L~~L~L~~ 257 (306)
T 2z66_A 211 -FFSLDT--FPYKCLNSLQVLDYS-LNHIMTSKKQELQHF-------PSSLAFLNLTQ 257 (306)
T ss_dssp -CSBCCS--GGGTTCTTCCEEECT-TSCCCBCSSSSCCCC-------CTTCCEEECTT
T ss_pred -cCccCh--hhccCcccCCEeECC-CCCCcccCHHHHHhh-------hccCCEEEccC
Confidence 444332 122 25677777776 664333344444332 12677777733
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.69 E-value=2.8e-16 Score=159.51 Aligned_cols=292 Identities=17% Similarity=0.116 Sum_probs=177.8
Q ss_pred CCCCCCccccccccceecCCCcccccc-CcccccCcccceecccCc-ccccc-cchhhhcCCCcceeeecccCCccccch
Q 036143 1 RLERVPSLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSK-MLIKF-PAGILPKLCNLYSLRLNWGSETSRETV 77 (355)
Q Consensus 1 ~l~~lP~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~-~~~~l-P~~i~~~L~~L~~L~l~~~~~~~~~~~ 77 (355)
+++.+|. -..+|++|||++|.++.+ |..++++.+|++|++++| .+..+ |..+ +++++|++|+++++.. .....
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f-~~L~~L~~L~Ls~N~l-~~~~p 90 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF-RNLPNLRILDLGSSKI-YFLHP 90 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTT-SSCTTCCEEECTTCCC-CEECT
T ss_pred CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHh-cCCCCCCEEECCCCcC-cccCH
Confidence 3677887 568999999999999866 778999999999999999 56677 4555 9999999999998754 33334
Q ss_pred hHhhcccccccceEEEeccCcc-cccc--ccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCcc
Q 036143 78 QEAARSSDRLDTFVGYFSKLDD-FNTY--VKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICE 154 (355)
Q Consensus 78 ~~~l~~L~~L~~L~l~~~~~~~-~~~~--~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~ 154 (355)
. .++.+++|++|+++.+...+ .+.. ++.++.|+.|. +..+.+.+......+.....++.+.++++.+.+
T Consensus 91 ~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~-------Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 91 D-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD-------LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp T-SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE-------EESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred h-HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE-------CCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 4 89999999999998877765 2332 77888888887 444444433323344445667777777776654
Q ss_pred CCCccccCc--hhHHHH-Hhhcccccc------------------------------ccc-ccccc------cc------
Q 036143 155 REGVTIVLP--KDVQGL-IMRDIEDVT------------------------------SLN-DVFSK------EQ------ 188 (355)
Q Consensus 155 ~~~~~~~~~--~~L~~L-l~~~~~~~~------------------------------~l~-~~~~l------~~------ 188 (355)
.....+... ++|+.| +.++ .-.. .++ .+... ..
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAAN-SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCS-BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eCHHHcccccCCccceEECCCC-ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 322211111 122222 2221 0000 000 00000 00
Q ss_pred ----------------cccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcc
Q 036143 189 ----------------GLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELG 252 (355)
Q Consensus 189 ----------------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 252 (355)
.....-..++|+.|+++++ .+....+. .+..+++|+.|+++++......+.
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~----------- 308 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSR-VFETLKDLKVLNLAYNKINKIADE----------- 308 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEECSC-CSSSCCCCCEEEEESCCCCEECTT-----------
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCC-cccccChh-hhhcCCCCCEEECCCCcCCCCChH-----------
Confidence 0000001256677777766 34443322 256677788888776543322222
Q ss_pred cccccccCcccceeecccccccceecCCCcee-cCCCceEEEEcCCCCccccccC-CCCCCCCCCCCCCCCeeEEEehhh
Q 036143 253 ISAITITLPRLKKLWLSFLPELKSVCSDNAVL-ICNSLQEIQITPSCPKLKRLSL-RLPPLDNGQPSPSPALEVIKIRKE 330 (355)
Q Consensus 253 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l-~~~~L~~L~i~~~c~~L~~lp~-~~~~l~~~~~~~~~~L~~l~~~~~ 330 (355)
.+..+++|++|+++++. +..+.. ..+ .+++|++|++. ++ .+..++. .+..+ ++|+.+++..+
T Consensus 309 ---~~~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~L~-~N-~i~~~~~~~~~~l--------~~L~~L~Ls~N 372 (844)
T 3j0a_A 309 ---AFYGLDNLQVLNLSYNL-LGELYS--SNFYGLPKVAYIDLQ-KN-HIAIIQDQTFKFL--------EKLQTLDLRDN 372 (844)
T ss_dssp ---TTTTCSSCCEEEEESCC-CSCCCS--CSCSSCTTCCEEECC-SC-CCCCCCSSCSCSC--------CCCCEEEEETC
T ss_pred ---HhcCCCCCCEEECCCCC-CCccCH--HHhcCCCCCCEEECC-CC-CCCccChhhhcCC--------CCCCEEECCCC
Confidence 55678888888888774 444433 222 35688888887 65 5666654 34444 38899988665
Q ss_pred hhcc
Q 036143 331 LWES 334 (355)
Q Consensus 331 ~~~~ 334 (355)
....
T Consensus 373 ~l~~ 376 (844)
T 3j0a_A 373 ALTT 376 (844)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 5444
No 49
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.66 E-value=7.3e-16 Score=152.87 Aligned_cols=290 Identities=13% Similarity=0.129 Sum_probs=155.5
Q ss_pred CCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+. .++++|++++|.++.+|. .++++.+|++|++++|.+..++.+.++++++|++|+++++.. ......
T Consensus 16 L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~- 91 (680)
T 1ziw_A 16 LTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDK- 91 (680)
T ss_dssp CSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC-CCCCTT-
T ss_pred ccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc-CccChh-
Confidence 56677 554 677888888887776655 477778888888887777776554447788888888876543 222222
Q ss_pred hhcccccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGV 158 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~ 158 (355)
.++.+++|++|++..+...... ..++.++.|+.|.... ..+.+. .+..+.....++.+.+.++.+.+....
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-------n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH-------NGLSST-KLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCS-------SCCSCC-CCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCC-------Cccccc-CchhhcccccCCEEEccCCcccccCHH
Confidence 4777777888777766665544 3466666666666221 111111 111122233445555555544432211
Q ss_pred ccc--CchhHHHH-Hhhcccccccccc-----cccccc--------------cccccccCCCccEEeeccCCCccccchH
Q 036143 159 TIV--LPKDVQGL-IMRDIEDVTSLND-----VFSKEQ--------------GLVNAAKFSHLKALWFSYCPNLQKLFSL 216 (355)
Q Consensus 159 ~~~--~~~~L~~L-l~~~~~~~~~l~~-----~~~l~~--------------~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 216 (355)
.+. ..++|+.| +.++ .++.+.+ ...+.. ........++|+.|+++++ .++...+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n-~l~~~~~~ 240 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSN--QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNT 240 (680)
T ss_dssp HHGGGTTCEESEEECTTC--CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTS-CCCEECTT
T ss_pred HhhccccccccEEECCCC--cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCC-cccccChh
Confidence 111 12334444 4332 1111111 000000 0000002366778888777 44443332
Q ss_pred HHHhhcC--CCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEE
Q 036143 217 QLLAALQ--NLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQI 294 (355)
Q Consensus 217 ~~l~~L~--~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i 294 (355)
. +..++ +|+.|+++++.. ..+.. ..+..+++|++|++.++. +..+... ....+++|++|++
T Consensus 241 ~-~~~l~~~~L~~L~Ls~n~l-~~~~~-------------~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L 303 (680)
T 1ziw_A 241 T-FLGLKWTNLTMLDLSYNNL-NVVGN-------------DSFAWLPQLEYFFLEYNN-IQHLFSH-SLHGLFNVRYLNL 303 (680)
T ss_dssp T-TGGGGGSCCCEEECTTSCC-CEECT-------------TTTTTCTTCCEEECCSCC-BSEECTT-TTTTCTTCCEEEC
T ss_pred H-hhccCcCCCCEEECCCCCc-CccCc-------------ccccCcccccEeeCCCCc-cCccChh-hhcCCCCccEEec
Confidence 2 44443 488888887653 33321 156788899999998874 4444331 1123568999999
Q ss_pred cCCCCccc-----cccC----CCCCCCCCCCCCCCCeeEEEehhhhh
Q 036143 295 TPSCPKLK-----RLSL----RLPPLDNGQPSPSPALEVIKIRKELW 332 (355)
Q Consensus 295 ~~~c~~L~-----~lp~----~~~~l~~~~~~~~~~L~~l~~~~~~~ 332 (355)
. +|..-. .+|. .+.. +++|+.+++..+..
T Consensus 304 ~-~~~~~~~~~~~~lp~i~~~~~~~--------l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 304 K-RSFTKQSISLASLPKIDDFSFQW--------LKCLEHLNMEDNDI 341 (680)
T ss_dssp T-TCBCCC------CCEECTTTTTT--------CTTCCEEECCSCCB
T ss_pred c-chhhhcccccccccccChhhccc--------CCCCCEEECCCCcc
Confidence 7 654222 2332 2333 45999999965443
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=4.8e-16 Score=151.60 Aligned_cols=95 Identities=24% Similarity=0.239 Sum_probs=64.8
Q ss_pred CCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccc
Q 036143 196 FSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELK 275 (355)
Q Consensus 196 ~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 275 (355)
+++|+.|+++++ .++.+. ..+++|+.|+++++ .+..++ ..+++|++|+++++ .++
T Consensus 200 ~~~L~~L~L~~N-~l~~l~-----~~~~~L~~L~Ls~N-~L~~lp-----------------~~l~~L~~L~Ls~N-~L~ 254 (622)
T 3g06_A 200 PSELYKLWAYNN-RLTSLP-----ALPSGLKELIVSGN-RLTSLP-----------------VLPSELKELMVSGN-RLT 254 (622)
T ss_dssp CTTCCEEECCSS-CCSSCC-----CCCTTCCEEECCSS-CCSCCC-----------------CCCTTCCEEECCSS-CCS
T ss_pred cchhhEEECcCC-cccccC-----CCCCCCCEEEccCC-ccCcCC-----------------CCCCcCcEEECCCC-CCC
Confidence 466777777776 444432 12467788888764 344443 25688999999887 566
Q ss_pred eecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEehhh
Q 036143 276 SVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRKE 330 (355)
Q Consensus 276 ~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~~ 330 (355)
.++. .+++|++|++. +| ++..+|..+..+. +|+.+++..+
T Consensus 255 ~lp~-----~~~~L~~L~Ls-~N-~L~~lp~~l~~l~--------~L~~L~L~~N 294 (622)
T 3g06_A 255 SLPM-----LPSGLLSLSVY-RN-QLTRLPESLIHLS--------SETTVNLEGN 294 (622)
T ss_dssp CCCC-----CCTTCCEEECC-SS-CCCSCCGGGGGSC--------TTCEEECCSC
T ss_pred cCCc-----ccccCcEEeCC-CC-CCCcCCHHHhhcc--------ccCEEEecCC
Confidence 6543 34689999997 65 7778888776655 8999988433
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=4.7e-16 Score=146.86 Aligned_cols=249 Identities=19% Similarity=0.176 Sum_probs=160.7
Q ss_pred Ccccccc-ccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccc
Q 036143 6 PSLAKLL-ALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSS 84 (355)
Q Consensus 6 P~i~~l~-~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L 84 (355)
|..|.+. ..+.++.++.+++.+|..+. .+|++|++++|.+..++...|+++++|++|+++++.. ...... .+..+
T Consensus 47 p~~C~C~~~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~-~~~~l 122 (452)
T 3zyi_A 47 PSVCSCSNQFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVG-AFNGL 122 (452)
T ss_dssp CTTSEECSSSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTT-TTTTC
T ss_pred CCCCEECCCCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc-CCcChh-hccCc
Confidence 3444443 46788888889999998776 6899999999999988665559999999999998654 333334 78999
Q ss_pred ccccceEEEeccCcccccc-ccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCc
Q 036143 85 DRLDTFVGYFSKLDDFNTY-VKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLP 163 (355)
Q Consensus 85 ~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~ 163 (355)
++|++|++..+........ ++.++.|+.|. ++++... .+....+ ..+
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~------------L~~N~l~-~~~~~~~-------------------~~l 170 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELW------------LRNNPIE-SIPSYAF-------------------NRV 170 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEE------------CCSCCCC-EECTTTT-------------------TTC
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEE------------CCCCCcc-eeCHhHH-------------------hcC
Confidence 9999999988877766543 66777777777 2222110 0100001 112
Q ss_pred hhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceeccc
Q 036143 164 KDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEV 242 (355)
Q Consensus 164 ~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~ 242 (355)
++|+.| +.++ ..++.++... ...+++|++|+++++ +++.+.. +..+++|+.|+++++......+.
T Consensus 171 ~~L~~L~l~~~-~~l~~i~~~~--------~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~- 236 (452)
T 3zyi_A 171 PSLMRLDLGEL-KKLEYISEGA--------FEGLFNLKYLNLGMC-NIKDMPN---LTPLVGLEELEMSGNHFPEIRPG- 236 (452)
T ss_dssp TTCCEEECCCC-TTCCEECTTT--------TTTCTTCCEEECTTS-CCSSCCC---CTTCTTCCEEECTTSCCSEECGG-
T ss_pred CcccEEeCCCC-CCccccChhh--------ccCCCCCCEEECCCC-ccccccc---ccccccccEEECcCCcCcccCcc-
Confidence 222222 2222 2222222210 135778888988888 5555432 56788889999887543332232
Q ss_pred CcchhhhhcccccccccCcccceeecccccccceecCCCcee-cCCCceEEEEcCCCCccccccCCC-CCCCCCCCCCCC
Q 036143 243 NDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVL-ICNSLQEIQITPSCPKLKRLSLRL-PPLDNGQPSPSP 320 (355)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l-~~~~L~~L~i~~~c~~L~~lp~~~-~~l~~~~~~~~~ 320 (355)
.+..+++|++|++.++. +..+.. ..+ .+++|++|++. ++ ++..+|... ..+.
T Consensus 237 -------------~~~~l~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~L~-~N-~l~~~~~~~~~~l~-------- 290 (452)
T 3zyi_A 237 -------------SFHGLSSLKKLWVMNSQ-VSLIER--NAFDGLASLVELNLA-HN-NLSSLPHDLFTPLR-------- 290 (452)
T ss_dssp -------------GGTTCTTCCEEECTTSC-CCEECT--TTTTTCTTCCEEECC-SS-CCSCCCTTSSTTCT--------
T ss_pred -------------cccCccCCCEEEeCCCc-CceECH--HHhcCCCCCCEEECC-CC-cCCccChHHhcccc--------
Confidence 66788899999998874 555544 222 25789999996 55 677776543 4433
Q ss_pred CeeEEEehhh
Q 036143 321 ALEVIKIRKE 330 (355)
Q Consensus 321 ~L~~l~~~~~ 330 (355)
+|+.+++..+
T Consensus 291 ~L~~L~L~~N 300 (452)
T 3zyi_A 291 YLVELHLHHN 300 (452)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEEccCC
Confidence 8888888443
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.66 E-value=1.5e-16 Score=142.47 Aligned_cols=234 Identities=19% Similarity=0.183 Sum_probs=150.8
Q ss_pred CCCCC-ccccccccceecCCCccccccCcc-cccCcccceecccCcccccc---cchhhhcCCCcceeeecccCCccccc
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKF---PAGILPKLCNLYSLRLNWGSETSRET 76 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~l---P~~i~~~L~~L~~L~l~~~~~~~~~~ 76 (355)
++.+| .+. .+|++|++++|.++.+|.. ++++++|++|++++|.+..+ |..+ ..+++|++|+++++.. ..
T Consensus 19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i---~~ 92 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGV---IT 92 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSE---EE
T ss_pred cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCcc---cc
Confidence 67788 553 6899999999999999877 58999999999999988765 5666 8899999999998754 23
Q ss_pred hhHhhcccccccceEEEeccCcccc--ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCcc
Q 036143 77 VQEAARSSDRLDTFVGYFSKLDDFN--TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICE 154 (355)
Q Consensus 77 ~~~~l~~L~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~ 154 (355)
++..+..+++|++|++..+...... ..+..++.|+.|....+ .+.+. .+..+.....++.+.+.++.+.+
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-------~l~~~-~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-------HTRVA-FNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-------CCEEC-STTTTTTCTTCCEEECTTCEEGG
T ss_pred ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-------cCCcc-chhhcccCcCCCEEECCCCcccc
Confidence 3336889999999999877665544 24667777777762211 11100 11112223345555555554332
Q ss_pred CCCccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCC
Q 036143 155 REGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCN 234 (355)
Q Consensus 155 ~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~ 234 (355)
. .++... ..+++|++|+++++ +++...+.. +..+++|+.|+++++.
T Consensus 165 ~-----------------------~~~~~~---------~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 165 N-----------------------FLPDIF---------TELRNLTFLDLSQC-QLEQLSPTA-FNSLSSLQVLNMSHNN 210 (306)
T ss_dssp G-----------------------EECSCC---------TTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTSC
T ss_pred c-----------------------cchhHH---------hhCcCCCEEECCCC-CcCCcCHHH-hcCCCCCCEEECCCCc
Confidence 0 001111 35678888888888 455543322 5678888888888654
Q ss_pred CCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCC
Q 036143 235 RNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCP 299 (355)
Q Consensus 235 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~ 299 (355)
+..+.. ..+..+++|++|+++++......+.....++ ++|++|++. +++
T Consensus 211 -l~~~~~-------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-~~L~~L~L~-~N~ 259 (306)
T 2z66_A 211 -FFSLDT-------------FPYKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSLAFLNLT-QND 259 (306)
T ss_dssp -CSBCCS-------------GGGTTCTTCCEEECTTSCCCBCSSSSCCCCC-TTCCEEECT-TCC
T ss_pred -cCccCh-------------hhccCcccCCEeECCCCCCcccCHHHHHhhh-ccCCEEEcc-CCC
Confidence 333321 0455778888888888754444444212221 378888886 554
No 53
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=1.6e-15 Score=130.82 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=43.5
Q ss_pred ccceecCCCccccccCc-ccccCcccceecccCcc-cccccchhhhcCCCcceeeecccCCccccchhHhhcccccccce
Q 036143 13 ALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKM-LIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTF 90 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~-~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 90 (355)
+|++|++++|.++.+|. .++.+++|++|++++|. +..+|...|+++++|++|++++++........ .+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~-~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD-ALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT-SEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH-HhCCCCCCCEE
Confidence 55556666555555544 35555566666666554 55555533355556666665542222222222 44555555555
Q ss_pred EEEeccCc
Q 036143 91 VGYFSKLD 98 (355)
Q Consensus 91 ~l~~~~~~ 98 (355)
++..+...
T Consensus 111 ~l~~n~l~ 118 (239)
T 2xwt_C 111 GIFNTGLK 118 (239)
T ss_dssp EEEEECCC
T ss_pred eCCCCCCc
Confidence 55544443
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=143.82 Aligned_cols=250 Identities=18% Similarity=0.213 Sum_probs=162.0
Q ss_pred Ccccccc-ccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccc
Q 036143 6 PSLAKLL-ALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSS 84 (355)
Q Consensus 6 P~i~~l~-~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L 84 (355)
|..|.+. ..+.++.++.+++.+|..+. .++++|++++|.+..++...|+++++|++|+++++.. ...... .+..+
T Consensus 36 p~~C~C~~~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~i~~~-~~~~l 111 (440)
T 3zyj_A 36 PSVCSCSNQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIG-AFNGL 111 (440)
T ss_dssp CSSSEECTTSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC-CEECGG-GGTTC
T ss_pred CCCCEeCCCCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC-CccChh-hccCC
Confidence 4344444 46788888889999998876 6899999999999998866559999999999998654 333334 78999
Q ss_pred ccccceEEEeccCccccc-cccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCc
Q 036143 85 DRLDTFVGYFSKLDDFNT-YVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLP 163 (355)
Q Consensus 85 ~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~ 163 (355)
++|++|++..+....... .+..++.|+.|... .+.+.... ...+.....++.+.+
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-------~N~i~~~~-~~~~~~l~~L~~L~l---------------- 167 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR-------NNPIESIP-SYAFNRIPSLRRLDL---------------- 167 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC-------SCCCCEEC-TTTTTTCTTCCEEEC----------------
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCC-------CCcccccC-HHHhhhCcccCEeCC----------------
Confidence 999999998887776654 46777777777721 11111100 000111122222222
Q ss_pred hhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccC
Q 036143 164 KDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVN 243 (355)
Q Consensus 164 ~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~ 243 (355)
.++ ..+..++.. ....+++|++|+++++ +++.+.. +..+++|+.|+++++ .+..+..
T Consensus 168 -------~~~-~~l~~i~~~--------~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~-- 224 (440)
T 3zyj_A 168 -------GEL-KRLSYISEG--------AFEGLSNLRYLNLAMC-NLREIPN---LTPLIKLDELDLSGN-HLSAIRP-- 224 (440)
T ss_dssp -------CCC-TTCCEECTT--------TTTTCSSCCEEECTTS-CCSSCCC---CTTCSSCCEEECTTS-CCCEECT--
T ss_pred -------CCC-CCcceeCcc--------hhhcccccCeecCCCC-cCccccc---cCCCcccCEEECCCC-ccCccCh--
Confidence 222 222222220 0135778888988888 5555432 567888899999876 4444422
Q ss_pred cchhhhhcccccccccCcccceeecccccccceecCCCcee-cCCCceEEEEcCCCCccccccCCC-CCCCCCCCCCCCC
Q 036143 244 DEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVL-ICNSLQEIQITPSCPKLKRLSLRL-PPLDNGQPSPSPA 321 (355)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l-~~~~L~~L~i~~~c~~L~~lp~~~-~~l~~~~~~~~~~ 321 (355)
..+..+++|++|++.++ .+..+.. ..+ .+++|++|++. ++ ++..+|... ..+. +
T Consensus 225 -----------~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~~l~~L~~L~L~-~N-~l~~~~~~~~~~l~--------~ 280 (440)
T 3zyj_A 225 -----------GSFQGLMHLQKLWMIQS-QIQVIER--NAFDNLQSLVEINLA-HN-NLTLLPHDLFTPLH--------H 280 (440)
T ss_dssp -----------TTTTTCTTCCEEECTTC-CCCEECT--TSSTTCTTCCEEECT-TS-CCCCCCTTTTSSCT--------T
T ss_pred -----------hhhccCccCCEEECCCC-ceeEECh--hhhcCCCCCCEEECC-CC-CCCccChhHhcccc--------C
Confidence 16678889999999887 4566544 333 26789999996 54 677776543 4433 8
Q ss_pred eeEEEehhh
Q 036143 322 LEVIKIRKE 330 (355)
Q Consensus 322 L~~l~~~~~ 330 (355)
|+.+++..+
T Consensus 281 L~~L~L~~N 289 (440)
T 3zyj_A 281 LERIHLHHN 289 (440)
T ss_dssp CCEEECCSS
T ss_pred CCEEEcCCC
Confidence 888888443
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.64 E-value=9.8e-16 Score=144.62 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=60.3
Q ss_pred cccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceE
Q 036143 12 LALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFV 91 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~ 91 (355)
++|++|++++|.++.+| +++++.+|++|++++|.+..+|..+ .+|++|+++++.. ..++ .++.+++|++|+
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~----~~L~~L~L~~n~l---~~l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP----PSLEFIAAGNNQL---EELP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC----TTCCEEECCSSCC---SSCC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc----ccccEEECcCCcC---CcCc-cccCCCCCCEEE
Confidence 57888888888888888 5888888888888888888777644 4788888887644 2345 678888888888
Q ss_pred EEeccCccc
Q 036143 92 GYFSKLDDF 100 (355)
Q Consensus 92 l~~~~~~~~ 100 (355)
+..+.....
T Consensus 202 l~~N~l~~l 210 (454)
T 1jl5_A 202 ADNNSLKKL 210 (454)
T ss_dssp CCSSCCSSC
T ss_pred CCCCcCCcC
Confidence 876665543
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.63 E-value=2e-15 Score=133.60 Aligned_cols=110 Identities=21% Similarity=0.176 Sum_probs=72.0
Q ss_pred CCCCC-ccccccccceecCCCccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+ ..+|++|++++|.++.+| ..++.+.+|++|++++|.+..++...++++++|++|+++++.........
T Consensus 23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~- 99 (285)
T 1ozn_A 23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA- 99 (285)
T ss_dssp CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT-
T ss_pred cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH-
Confidence 45566 44 467888888888777765 34777888888888888777763332378888888888776423333333
Q ss_pred hhcccccccceEEEeccCcccc-ccccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~ 114 (355)
.+..+++|++|++..+...... ..++.++.|+.|.
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 6777788888887666655443 3345555555555
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.62 E-value=2e-15 Score=135.76 Aligned_cols=104 Identities=20% Similarity=0.124 Sum_probs=53.0
Q ss_pred cCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccccc
Q 036143 195 KFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPEL 274 (355)
Q Consensus 195 ~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 274 (355)
.+++|++|+++++ .++...+......+++|++|+++++. +..+. ....+++|++|+++++ .+
T Consensus 142 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---------------~~~~l~~L~~L~Ls~N-~l 203 (317)
T 3o53_A 142 CRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVK---------------GQVVFAKLKTLDLSSN-KL 203 (317)
T ss_dssp GGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE---------------CCCCCTTCCEEECCSS-CC
T ss_pred ccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Ccccc---------------cccccccCCEEECCCC-cC
Confidence 3455666666665 34443332222355666666666543 33332 2224566666666665 34
Q ss_pred ceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEeh
Q 036143 275 KSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIR 328 (355)
Q Consensus 275 ~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~ 328 (355)
..++. ....+++|++|++. +| .++.+|..+..+. +|+.+++.
T Consensus 204 ~~l~~--~~~~l~~L~~L~L~-~N-~l~~l~~~~~~l~--------~L~~L~l~ 245 (317)
T 3o53_A 204 AFMGP--EFQSAAGVTWISLR-NN-KLVLIEKALRFSQ--------NLEHFDLR 245 (317)
T ss_dssp CEECG--GGGGGTTCSEEECT-TS-CCCEECTTCCCCT--------TCCEEECT
T ss_pred Ccchh--hhcccCcccEEECc-CC-cccchhhHhhcCC--------CCCEEEcc
Confidence 44443 22234566666664 43 5555665554433 66666663
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=3.5e-15 Score=131.41 Aligned_cols=109 Identities=15% Similarity=0.214 Sum_probs=75.4
Q ss_pred CCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++++| .+. .+|++|++++|.++.+|. .++++.+|++|++++|.+..++.+.++++++|++|+++++.. ......
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~- 94 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALG- 94 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECTT-
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc-CccChh-
Confidence 45677 553 578899999988887765 678888999999999888888775448888999999887643 233333
Q ss_pred hhcccccccceEEEeccCccccc-cccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 114 (355)
.+..+++|++|++..+....... .++.++.|+.|.
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 67888888888886555444332 233444444333
No 59
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=3.6e-15 Score=136.07 Aligned_cols=99 Identities=21% Similarity=0.165 Sum_probs=56.9
Q ss_pred CccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccccccee
Q 036143 198 HLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSV 277 (355)
Q Consensus 198 ~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 277 (355)
.++.|+++++ +++.+... ....++|+.|.+.+++.++.++.. .+..+++|++|+++++ .++.+
T Consensus 155 ~l~~L~L~~N-~i~~i~~~--~f~~~~L~~l~l~~~n~l~~i~~~-------------~f~~l~~L~~LdLs~N-~l~~l 217 (350)
T 4ay9_X 155 ESVILWLNKN-GIQEIHNS--AFNGTQLDELNLSDNNNLEELPND-------------VFHGASGPVILDISRT-RIHSL 217 (350)
T ss_dssp SCEEEECCSS-CCCEECTT--SSTTEEEEEEECTTCTTCCCCCTT-------------TTTTEECCSEEECTTS-CCCCC
T ss_pred hhhhhccccc-cccCCChh--hccccchhHHhhccCCcccCCCHH-------------HhccCcccchhhcCCC-CcCcc
Confidence 4556666665 44443322 123345666666666666666531 3456667777777665 45555
Q ss_pred cCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEe
Q 036143 278 CSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKI 327 (355)
Q Consensus 278 ~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~ 327 (355)
+. +. |.+|+.|++. +|..++.+|. +..++ +|+.+++
T Consensus 218 p~--~~--~~~L~~L~~l-~~~~l~~lP~-l~~l~--------~L~~l~l 253 (350)
T 4ay9_X 218 PS--YG--LENLKKLRAR-STYNLKKLPT-LEKLV--------ALMEASL 253 (350)
T ss_dssp CS--SS--CTTCCEEECT-TCTTCCCCCC-TTTCC--------SCCEEEC
T ss_pred Ch--hh--hccchHhhhc-cCCCcCcCCC-chhCc--------ChhhCcC
Confidence 44 33 3467777776 7777777763 44433 6666666
No 60
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=2.5e-15 Score=134.67 Aligned_cols=100 Identities=16% Similarity=0.202 Sum_probs=82.3
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
...++.+|++|++++|.++.+| .+..+.+|++|++++|.+..+|. + +++++|++|+++++.. ..++ .++.+++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~-~~l~~L~~L~L~~n~l---~~~~-~~~~l~~ 108 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-L-KNLTKITELELSGNPL---KNVS-AIAGLQS 108 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCCSCCEEECCSCCC---SCCG-GGTTCTT
T ss_pred cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-H-ccCCCCCEEEccCCcC---CCch-hhcCCCC
Confidence 4567899999999999999987 68999999999999999999988 6 9999999999998764 3345 7999999
Q ss_pred ccceEEEeccCccccccccccccccccc
Q 036143 87 LDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 87 L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
|++|++..+...... .+..++.|+.|.
T Consensus 109 L~~L~l~~n~l~~~~-~l~~l~~L~~L~ 135 (308)
T 1h6u_A 109 IKTLDLTSTQITDVT-PLAGLSNLQVLY 135 (308)
T ss_dssp CCEEECTTSCCCCCG-GGTTCTTCCEEE
T ss_pred CCEEECCCCCCCCch-hhcCCCCCCEEE
Confidence 999999877766543 355666666655
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=9.9e-16 Score=139.90 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=89.9
Q ss_pred CCCCC--ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccch-
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETV- 77 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~- 77 (355)
++.+| .+.++++|++|++++|.++.+ |..++++.+|++|++++|.+..+|.+.++++++|++|+++++... ....
T Consensus 64 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~ 142 (353)
T 2z80_A 64 ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGET 142 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSS
T ss_pred CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCch
Confidence 45566 689999999999999999977 556999999999999999999999985599999999999987542 2222
Q ss_pred hHhhcccccccceEEEecc-Ccccc-ccccccccccccc
Q 036143 78 QEAARSSDRLDTFVGYFSK-LDDFN-TYVKSSDGQRSKH 114 (355)
Q Consensus 78 ~~~l~~L~~L~~L~l~~~~-~~~~~-~~~~~l~~L~~L~ 114 (355)
. .++.+++|++|++..+. ..... ..++.++.|+.|.
T Consensus 143 ~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 143 S-LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp C-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred h-hhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 2 58899999999998874 44443 4577777888777
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.58 E-value=3.2e-15 Score=134.21 Aligned_cols=253 Identities=13% Similarity=0.070 Sum_probs=156.0
Q ss_pred cccccccceecCCCccccccCcccccCcccceecccCccccc--ccchhhh-------cCCCcceeeecccCCccccchh
Q 036143 8 LAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIK--FPAGILP-------KLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~--lP~~i~~-------~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++..++|++|++++|.+ .+|..+... |++|++++|.+.. +|..+ . ++++|++|+++++.. .+..+.
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRI-LFGALRVLGISGLQELTLENLEV-TGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHH-HHHHHHHHTTSCCCEEEEEEEBC-BSCCCC
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHH-HHHHHHhcCcCCccEEEccCCcc-cchhHH
Confidence 45677788888888887 788777655 8888888887643 56555 4 688888888887654 222223
Q ss_pred Hhh--cccccccceEEEeccCcccccccccc-----ccccccccccccceeEeecCCCccccceecccCCccEEEEeccC
Q 036143 79 EAA--RSSDRLDTFVGYFSKLDDFNTYVKSS-----DGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCK 151 (355)
Q Consensus 79 ~~l--~~L~~L~~L~l~~~~~~~~~~~~~~l-----~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~ 151 (355)
.+ +.+++|++|+++.+.....+..++.+ +.|+.|. +....+.+.. +..+.....++.++++++.
T Consensus 114 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~-------L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 114 -PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS-------IAQAHSLNFS-CEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp -CSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEE-------EESCSCCCCC-TTTCCCCSSCCEEECCSCT
T ss_pred -HHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEE-------eeCCCCccch-HHHhccCCCCCEEECCCCC
Confidence 44 78888888888877766554444444 5555555 3333332221 1112222333334443333
Q ss_pred CccCCCccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccc--hHHHHhhcCCCCeEE
Q 036143 152 ICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLF--SLQLLAALQNLEFLV 229 (355)
Q Consensus 152 ~~~~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~~L~ 229 (355)
+.+.. ...... ....+++|++|+++++ +++.+. +...+..+++|+.|+
T Consensus 185 l~~~~---------------------~~~~~~--------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~ 234 (312)
T 1wwl_A 185 ELGER---------------------GLISAL--------CPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLD 234 (312)
T ss_dssp TCHHH---------------------HHHHHS--------CTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEE
T ss_pred cCcch---------------------HHHHHH--------HhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEE
Confidence 21100 000000 0146789999999999 565432 223346789999999
Q ss_pred EecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCCC
Q 036143 230 VQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLP 309 (355)
Q Consensus 230 l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~ 309 (355)
++++......+. . ....+++|++|+++++. ++.++. ... ++|++|++. + .+++.+|. +.
T Consensus 235 Ls~N~l~~~~~~-~------------~~~~l~~L~~L~Ls~N~-l~~ip~--~~~--~~L~~L~Ls-~-N~l~~~p~-~~ 293 (312)
T 1wwl_A 235 LSHNSLRDAAGA-P------------SCDWPSQLNSLNLSFTG-LKQVPK--GLP--AKLSVLDLS-Y-NRLDRNPS-PD 293 (312)
T ss_dssp CTTSCCCSSCCC-S------------CCCCCTTCCEEECTTSC-CSSCCS--SCC--SEEEEEECC-S-SCCCSCCC-TT
T ss_pred CCCCcCCcccch-h------------hhhhcCCCCEEECCCCc-cChhhh--hcc--CCceEEECC-C-CCCCCChh-Hh
Confidence 997654332311 0 34467999999999984 666655 222 699999996 5 57888876 55
Q ss_pred CCCCCCCCCCCCeeEEEehhhhhc
Q 036143 310 PLDNGQPSPSPALEVIKIRKELWE 333 (355)
Q Consensus 310 ~l~~~~~~~~~~L~~l~~~~~~~~ 333 (355)
.+. +|+.+++..+.+.
T Consensus 294 ~l~--------~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 294 ELP--------QVGNLSLKGNPFL 309 (312)
T ss_dssp TSC--------EEEEEECTTCTTT
T ss_pred hCC--------CCCEEeccCCCCC
Confidence 444 9999999665543
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=1.7e-14 Score=126.64 Aligned_cols=98 Identities=15% Similarity=0.139 Sum_probs=53.6
Q ss_pred ccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEE
Q 036143 13 ALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVG 92 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l 92 (355)
+.+++++++++++.+|..+. .+|++|++++|.+..+|...|+++++|++|+++++.. ...... .+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~-~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAG-IFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTT-TTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChh-hhcCCCCCCEEEC
Confidence 35666666666666665554 4566666666666666654336666666666665432 111111 3456666666666
Q ss_pred EeccCccccc-cccccccccccc
Q 036143 93 YFSKLDDFNT-YVKSSDGQRSKH 114 (355)
Q Consensus 93 ~~~~~~~~~~-~~~~l~~L~~L~ 114 (355)
..+....... .+..+..|+.|.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCcCCcCCHhHcccccCCCEEE
Confidence 6555544332 234444444444
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=8.1e-15 Score=139.59 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=59.4
Q ss_pred cccceecCCCccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccce
Q 036143 12 LALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTF 90 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 90 (355)
.+|++|+|++|.+..+| ..++.+++|++|++++|.+...+. + +.+++|++|++++|.. . .+...++|++|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l---~----~l~~~~~L~~L 104 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYV---Q----ELLVGPSIETL 104 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-C-TTCTTCCEEECCSSEE---E----EEEECTTCCEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-c-ccCCCCCEEEecCCcC---C----CCCCCCCcCEE
Confidence 38888888888888664 578888888899888888876665 5 8888888888887643 1 23344778888
Q ss_pred EEEeccCccc
Q 036143 91 VGYFSKLDDF 100 (355)
Q Consensus 91 ~l~~~~~~~~ 100 (355)
++..+.+...
T Consensus 105 ~L~~N~l~~~ 114 (487)
T 3oja_A 105 HAANNNISRV 114 (487)
T ss_dssp ECCSSCCCCE
T ss_pred ECcCCcCCCC
Confidence 8876665543
No 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.57 E-value=1.7e-14 Score=136.12 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=65.2
Q ss_pred cccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceE
Q 036143 12 LALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFV 91 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~ 91 (355)
.+|++|++++|.++.+|... .+|++|++++|.+..+| ++ +++++|++|+++++... .++ . ...+|++|+
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~lp-~~-~~l~~L~~L~l~~N~l~---~lp-~--~~~~L~~L~ 179 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKLP-EL-QNSSFLKIIDVDNNSLK---KLP-D--LPPSLEFIA 179 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSSCC-CC-TTCTTCCEEECCSSCCS---CCC-C--CCTTCCEEE
T ss_pred CCCcEEECCCCccCcccCCC---CCCCEEECcCCCCCCCc-cc-CCCCCCCEEECCCCcCc---ccC-C--CcccccEEE
Confidence 66777777777776665421 68899999999888888 46 89999999999886542 233 1 135888888
Q ss_pred EEeccCccccccccccccccccc
Q 036143 92 GYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 92 l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
+..+.....+ .++.++.|+.|.
T Consensus 180 L~~n~l~~l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 180 AGNNQLEELP-ELQNLPFLTAIY 201 (454)
T ss_dssp CCSSCCSSCC-CCTTCTTCCEEE
T ss_pred CcCCcCCcCc-cccCCCCCCEEE
Confidence 8877776654 566777777666
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=2.3e-14 Score=127.15 Aligned_cols=102 Identities=13% Similarity=0.152 Sum_probs=81.8
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
+++++.+++.+++++++++.+|..+. .++++|++++|.+..++...+..+++|++|+++++.. ..++ ..+.+++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~-~~~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQ-VDGTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC---CEEE-CCSCCTT
T ss_pred cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc---Cccc-CCCCCCc
Confidence 67889999999999999999998876 6899999999999988765559999999999998754 3334 4478899
Q ss_pred ccceEEEeccCccccccccccccccccc
Q 036143 87 LDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 87 L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
|++|+++.+....++..+..+..|+.|.
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLD 106 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEE
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEE
Confidence 9999998777766555555555555555
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=3.4e-14 Score=127.20 Aligned_cols=105 Identities=13% Similarity=0.178 Sum_probs=87.4
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.+|.+..+++|++|++++|.+..+|. ++.+++|++|++++|.+..+| .+ +++++|++|++++|.. ..++ .+
T Consensus 53 i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~-~~l~~L~~L~l~~n~l---~~~~-~l 125 (308)
T 1h6u_A 53 VTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AI-AGLQSIKTLDLTSTQI---TDVT-PL 125 (308)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GG-TTCTTCCEEECTTSCC---CCCG-GG
T ss_pred ccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hh-cCCCCCCEEECCCCCC---CCch-hh
Confidence 5677888999999999999999999987 999999999999999999887 45 9999999999999765 3355 69
Q ss_pred cccccccceEEEeccCccccccccccccccccc
Q 036143 82 RSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
+.+++|++|++..+....... ++.++.|+.|.
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 157 (308)
T 1h6u_A 126 AGLSNLQVLYLDLNQITNISP-LAGLTNLQYLS 157 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred cCCCCCCEEECCCCccCcCcc-ccCCCCccEEE
Confidence 999999999998777655433 55555555555
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.55 E-value=5.1e-14 Score=124.53 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=75.5
Q ss_pred ceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEe
Q 036143 15 QCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYF 94 (355)
Q Consensus 15 ~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 94 (355)
++++.++++++.+|..+ ..+|++|++++|.+..+|.+.++++++|++|+++++.. ...... .+..+++|++|++..
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~-~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAA-AFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTT-TTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcc-ceeCHh-hcCCccCCCEEeCCC
Confidence 68999999999999765 46999999999999999876559999999999998643 333344 789999999999987
Q ss_pred cc-Cccc-cccccccccccccc
Q 036143 95 SK-LDDF-NTYVKSSDGQRSKH 114 (355)
Q Consensus 95 ~~-~~~~-~~~~~~l~~L~~L~ 114 (355)
+. .... ...+..++.|+.|.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCCccccCHHHhcCCcCCCEEE
Confidence 75 5444 34466666666665
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=8.9e-14 Score=119.75 Aligned_cols=224 Identities=10% Similarity=0.083 Sum_probs=137.9
Q ss_pred CccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 6 PSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 6 P~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
|..|.+...+..++...+++.+|. +.. +|++|++++|.++.+|...++.+++|++|+++++......... .+..++
T Consensus 5 p~~C~C~~~~~~~v~c~~l~~ip~-~~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~ 80 (239)
T 2xwt_C 5 SPPCECHQEEDFRVTCKDIQRIPS-LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH-SFYNLS 80 (239)
T ss_dssp SSSCSEEECSTTEEEECSCSSCCC-CCT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTT-TEESCT
T ss_pred CCCCeeCCCCcceeEccCccccCC-CCC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHh-HcCCCc
Confidence 445566554555544446888998 544 8999999999999999865599999999999987523333333 688999
Q ss_pred cccceEEEe-ccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCc
Q 036143 86 RLDTFVGYF-SKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLP 163 (355)
Q Consensus 86 ~L~~L~l~~-~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~ 163 (355)
+|++|++.. +...... ..+..++.|+.|. +....+.+
T Consensus 81 ~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~-------l~~n~l~~---------------------------------- 119 (239)
T 2xwt_C 81 KVTHIEIRNTRNLTYIDPDALKELPLLKFLG-------IFNTGLKM---------------------------------- 119 (239)
T ss_dssp TCCEEEEEEETTCCEECTTSEECCTTCCEEE-------EEEECCCS----------------------------------
T ss_pred CCcEEECCCCCCeeEcCHHHhCCCCCCCEEe-------CCCCCCcc----------------------------------
Confidence 999999987 6666554 2355555565555 22222111
Q ss_pred hhHHHHHhhcccccccccccccccccccccccCCCcc---EEeeccCCCccccchHHHHhhcCCCC-eEEEecCCCCcee
Q 036143 164 KDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLK---ALWFSYCPNLQKLFSLQLLAALQNLE-FLVVQSCNRNEEI 239 (355)
Q Consensus 164 ~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~---~L~l~~~~~l~~~~~~~~l~~L~~L~-~L~l~~~~~l~~i 239 (355)
++.+ ..+++|+ +|+++++.+++.+.+. .+..+++|+ .|+++++ .+..+
T Consensus 120 ----------------lp~~----------~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~n-~l~~i 171 (239)
T 2xwt_C 120 ----------------FPDL----------TKVYSTDIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYNN-GFTSV 171 (239)
T ss_dssp ----------------CCCC----------TTCCBCCSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCSC-CCCEE
T ss_pred ----------------cccc----------ccccccccccEEECCCCcchhhcCcc-cccchhcceeEEEcCCC-CCccc
Confidence 0110 1233333 7777777555554332 255677777 7777654 34455
Q ss_pred cccCcchhhhhcccccccccCcccceeecccccccceecCCCceec-C-CCceEEEEcCCCCccccccCCCCCCCCCCCC
Q 036143 240 VEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLI-C-NSLQEIQITPSCPKLKRLSLRLPPLDNGQPS 317 (355)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~-~-~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~ 317 (355)
+. .....++|++|++.+++.++.++. ..+. + ++|+.|++. + ..++.+|.. .
T Consensus 172 ~~--------------~~~~~~~L~~L~L~~n~~l~~i~~--~~~~~l~~~L~~L~l~-~-N~l~~l~~~--~------- 224 (239)
T 2xwt_C 172 QG--------------YAFNGTKLDAVYLNKNKYLTVIDK--DAFGGVYSGPSLLDVS-Q-TSVTALPSK--G------- 224 (239)
T ss_dssp CT--------------TTTTTCEEEEEECTTCTTCCEECT--TTTTTCSBCCSEEECT-T-CCCCCCCCT--T-------
T ss_pred CH--------------hhcCCCCCCEEEcCCCCCcccCCH--HHhhccccCCcEEECC-C-CccccCChh--H-------
Confidence 43 111226777777777765666654 2222 3 577777775 4 456666643 2
Q ss_pred CCCCeeEEEehhh
Q 036143 318 PSPALEVIKIRKE 330 (355)
Q Consensus 318 ~~~~L~~l~~~~~ 330 (355)
+++|+.+++...
T Consensus 225 -~~~L~~L~l~~~ 236 (239)
T 2xwt_C 225 -LEHLKELIARNT 236 (239)
T ss_dssp -CTTCSEEECTTC
T ss_pred -hccCceeeccCc
Confidence 336777766443
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.53 E-value=1.2e-14 Score=127.72 Aligned_cols=209 Identities=17% Similarity=0.139 Sum_probs=129.2
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
....+++|+.|++++|.++.++ .++.+++|++|++++|.+..++ .+ +++++|++|+++++.. ...... .++.+++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l-~~l~~L~~L~L~~n~l-~~~~~~-~~~~l~~ 110 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-AL-KELTNLTYLILTGNQL-QSLPNG-VFDKLTN 110 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GG-TTCTTCCEEECTTSCC-CCCCTT-TTTTCTT
T ss_pred ccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hh-cCCCCCCEEECCCCcc-CccChh-HhcCCcC
Confidence 4556778888888888877765 5788888888888888877765 45 8888888888887643 222222 4677888
Q ss_pred ccceEEEeccCcccccc-ccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCchh
Q 036143 87 LDTFVGYFSKLDDFNTY-VKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKD 165 (355)
Q Consensus 87 L~~L~l~~~~~~~~~~~-~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~ 165 (355)
|++|++..+........ ++.++.|+.|. +.++.+.+...
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--------------------------------L~~n~l~~~~~-------- 150 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLN--------------------------------LAHNQLQSLPK-------- 150 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEE--------------------------------CCSSCCCCCCT--------
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEE--------------------------------CCCCccCccCH--------
Confidence 88888876655544322 34444444444 22222211000
Q ss_pred HHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcc
Q 036143 166 VQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDE 245 (355)
Q Consensus 166 L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~ 245 (355)
.. ...+++|++|+++++ +++.+.+ ..+..+++|+.|+++++. +..++.
T Consensus 151 ----------------~~---------~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~---- 198 (272)
T 3rfs_A 151 ----------------GV---------FDKLTNLTELDLSYN-QLQSLPE-GVFDKLTQLKDLRLYQNQ-LKSVPD---- 198 (272)
T ss_dssp ----------------TT---------TTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCT----
T ss_pred ----------------HH---------hccCccCCEEECCCC-CcCccCH-HHhcCCccCCEEECCCCc-CCccCH----
Confidence 00 035677888888888 4555433 225677888888888654 333332
Q ss_pred hhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCCCCC
Q 036143 246 ETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPL 311 (355)
Q Consensus 246 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l 311 (355)
..+..+++|++|++.+++.. ..+++|+.+.++ .+.--..+|..++.+
T Consensus 199 ---------~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~l~~~-~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 199 ---------GVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEW-INKHSGVVRNSAGSV 245 (272)
T ss_dssp ---------TTTTTCTTCCEEECCSSCBC---------CCTTTTHHHHHH-HHHTGGGBBCTTSCB
T ss_pred ---------HHHhCCcCCCEEEccCCCcc---------ccCcHHHHHHHH-HHhCCCcccCccccc
Confidence 14567888888888877521 223467777665 554445677666544
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.52 E-value=6.8e-14 Score=136.47 Aligned_cols=237 Identities=16% Similarity=0.138 Sum_probs=143.0
Q ss_pred CCCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
.|+.+| .+. ++|++|++++|.++.+|. .+.+|++|++++|.+..+|. .+++|++|++++|.. ..++
T Consensus 51 ~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l---~~l~- 117 (622)
T 3g06_A 51 GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPL---THLP- 117 (622)
T ss_dssp CCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCC---CCCC-
T ss_pred CcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcC---CCCC-
Confidence 367788 665 799999999999999987 67899999999999998886 668899999988654 3333
Q ss_pred hhcccccccceEEEeccCcccccccccccccccccccccc-c-------eeEeecCCCccccceecccCCccEEEEeccC
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQV-S-------TVYNGSAANTRFYSFLRTREANKSVCFYGCK 151 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~-~-------~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~ 151 (355)
. .+++|++|++..+....++..+ +.|+.|....+- . .+....+.++.....-.....++.+.++++.
T Consensus 118 ~--~l~~L~~L~L~~N~l~~lp~~l---~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 118 A--LPSGLCKLWIFGNQLTSLPVLP---PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ 192 (622)
T ss_dssp C--CCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred C--CCCCcCEEECCCCCCCcCCCCC---CCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC
Confidence 2 5677778877766655544322 444444421110 0 0000001111000000011234444444444
Q ss_pred CccCCCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEE
Q 036143 152 ICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVV 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l 230 (355)
+.+.. ..+++|+.| +.++ .++ .++ ..+++|+.|+++++ +++.+. ..+++|+.|++
T Consensus 193 l~~l~----~~~~~L~~L~L~~N--~l~---~l~---------~~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~L 248 (622)
T 3g06_A 193 LASLP----TLPSELYKLWAYNN--RLT---SLP---------ALPSGLKELIVSGN-RLTSLP-----VLPSELKELMV 248 (622)
T ss_dssp CSCCC----CCCTTCCEEECCSS--CCS---SCC---------CCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEEC
T ss_pred CCCCC----CccchhhEEECcCC--ccc---ccC---------CCCCCCCEEEccCC-ccCcCC-----CCCCcCcEEEC
Confidence 43321 122344444 4433 111 121 24578999999988 566533 45688999999
Q ss_pred ecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCcc
Q 036143 231 QSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKL 301 (355)
Q Consensus 231 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L 301 (355)
+++ .+..++ . .+++|++|+++++ .+..++. ....+++|+.|++. +++--
T Consensus 249 s~N-~L~~lp---------------~--~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~-~N~l~ 297 (622)
T 3g06_A 249 SGN-RLTSLP---------------M--LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLE-GNPLS 297 (622)
T ss_dssp CSS-CCSCCC---------------C--CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECC-SCCCC
T ss_pred CCC-CCCcCC---------------c--ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEec-CCCCC
Confidence 875 455554 2 6788999999887 5666655 33346799999997 77543
No 72
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.51 E-value=3.4e-14 Score=139.31 Aligned_cols=110 Identities=19% Similarity=0.240 Sum_probs=77.6
Q ss_pred ccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 194 AKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 194 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
..++.++.|+++++.......+. .+..+++|+.|+++++. +..++. ..+..+++|++|+|+++ .
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N~-L~~l~~-------------~~f~~l~~L~~L~Ls~N-~ 529 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQ-LEQLSP-------------TAFNSLSSLQVLNMSHN-N 529 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSC-CCEECT-------------TTTTTCTTCCEEECTTS-C
T ss_pred ccchhhhhhhhhhcccccccCch-hhhhccccCEEECCCCc-cCCcCh-------------HHHcCCCCCCEEECCCC-c
Confidence 46788999999998655554333 26789999999999864 555532 16778999999999987 4
Q ss_pred cceecCCCceec-CCCceEEEEcCCCCccccc-cCCCCCCCCCCCCCCCCeeEEEehhh
Q 036143 274 LKSVCSDNAVLI-CNSLQEIQITPSCPKLKRL-SLRLPPLDNGQPSPSPALEVIKIRKE 330 (355)
Q Consensus 274 l~~i~~~~~~l~-~~~L~~L~i~~~c~~L~~l-p~~~~~l~~~~~~~~~~L~~l~~~~~ 330 (355)
+..+.. ..+. +++|++|+++ ++ ++..+ |..+..+ +++|+.|++..+
T Consensus 530 l~~l~~--~~~~~l~~L~~L~Ls-~N-~l~~~~~~~l~~l-------~~~L~~L~L~~N 577 (635)
T 4g8a_A 530 FFSLDT--FPYKCLNSLQVLDYS-LN-HIMTSKKQELQHF-------PSSLAFLNLTQN 577 (635)
T ss_dssp CCBCCC--GGGTTCTTCCEEECT-TS-CCCBCCSSCTTCC-------CTTCCEEECTTC
T ss_pred CCCCCh--hHHhCCCCCCEEECC-CC-cCCCCCHHHHHhh-------hCcCCEEEeeCC
Confidence 666655 3332 6799999996 55 56555 4455443 238999998433
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=1.1e-14 Score=131.89 Aligned_cols=100 Identities=9% Similarity=0.012 Sum_probs=61.7
Q ss_pred cccceecCCCccccccCcccccCcccceecccCccccc--ccchhhhcCCCcceeeecccCCccccchhHhhcccccccc
Q 036143 12 LALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIK--FPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDT 89 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~--lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 89 (355)
.++++|++++|.+...+..+..+.+|++|++++|.+.. +|..+ +++++|++|++++|. .....+. .++.+++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~L~~L~L~~~~-l~~~~~~-~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSKLQNLSLEGLR-LSDPIVN-TLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH-TTBCCCSEEECTTCB-CCHHHHH-HHTTCTTCSE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH-hhCCCCCEEeCcCcc-cCHHHHH-HHhcCCCCCE
Confidence 66777777777776665566677777777777776553 55555 777777777777653 2223333 6777777777
Q ss_pred eEEEec-cCcc--ccccccccccccccc
Q 036143 90 FVGYFS-KLDD--FNTYVKSSDGQRSKH 114 (355)
Q Consensus 90 L~l~~~-~~~~--~~~~~~~l~~L~~L~ 114 (355)
|++..+ ...+ ....++.++.|+.|.
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~ 174 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELN 174 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence 777655 2332 222344455555555
No 74
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=7.6e-14 Score=123.92 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=79.0
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
.+.++.+|++|++++|.+..+| .++.+.+|++|++++|.+..++. + +++++|++|+++++.. ..++ .++.+++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l-~~l~~L~~L~l~~n~l---~~~~-~l~~l~~ 113 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-L-ANLKNLGWLFLDENKV---KDLS-SLKDLKK 113 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCC---CCGG-GGTTCTT
T ss_pred chhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-c-ccCCCCCEEECCCCcC---CCCh-hhccCCC
Confidence 5667889999999999998886 48899999999999999998887 5 9999999999998754 4456 7899999
Q ss_pred ccceEEEeccCccccccccccccccccc
Q 036143 87 LDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 87 L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
|++|++..+..... ..+..++.|+.|.
T Consensus 114 L~~L~L~~n~i~~~-~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 114 LKSLSLEHNGISDI-NGLVHLPQLESLY 140 (291)
T ss_dssp CCEEECTTSCCCCC-GGGGGCTTCCEEE
T ss_pred CCEEECCCCcCCCC-hhhcCCCCCCEEE
Confidence 99999976666543 2344444444444
No 75
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.50 E-value=6.2e-14 Score=126.05 Aligned_cols=95 Identities=16% Similarity=0.208 Sum_probs=74.6
Q ss_pred ccccccceecCCCccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccc
Q 036143 9 AKLLALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRL 87 (355)
Q Consensus 9 ~~l~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 87 (355)
..+++|++|++++|.++.++ ..++.+.+|++|++++|.+..++. + +.+++|++|+++++.. . .+...++|
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~l~~L~~L~Ls~n~l------~-~l~~~~~L 101 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYV------Q-ELLVGPSI 101 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-E-TTCTTCCEEECCSSEE------E-EEEECTTC
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-h-hhcCCCCEEECcCCcc------c-cccCCCCc
Confidence 34679999999999999775 678999999999999999987776 5 9999999999998643 2 34456899
Q ss_pred cceEEEeccCccccccccccccccccc
Q 036143 88 DTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 88 ~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
++|++..+....... ..++.|+.|.
T Consensus 102 ~~L~l~~n~l~~~~~--~~~~~L~~L~ 126 (317)
T 3o53_A 102 ETLHAANNNISRVSC--SRGQGKKNIY 126 (317)
T ss_dssp CEEECCSSCCSEEEE--CCCSSCEEEE
T ss_pred CEEECCCCccCCcCc--cccCCCCEEE
Confidence 999998777665442 2345566665
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=5.2e-15 Score=133.99 Aligned_cols=213 Identities=19% Similarity=0.170 Sum_probs=142.7
Q ss_pred ccccccccceecCCCccccc--cCcccccCcccceecccCcccc-cccchhhhcCCCcceeeecccCCccccchhHhhcc
Q 036143 7 SLAKLLALQCLDLEYTAIKE--VPEGMEMLENLVHLTIYSKMLI-KFPAGILPKLCNLYSLRLNWGSETSRETVQEAARS 83 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~--lP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~ 83 (355)
.+..+.+|++|++++|.+.. +|..++.+++|++|++++|.+. ..|..+ +++++|++|++++|.......++..+..
T Consensus 88 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~ 166 (336)
T 2ast_B 88 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSS 166 (336)
T ss_dssp SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence 67789999999999998873 8888999999999999999877 456666 9999999999999855454445646889
Q ss_pred cccccceEEEec-cCcc--ccccccccc-cccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCcc
Q 036143 84 SDRLDTFVGYFS-KLDD--FNTYVKSSD-GQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVT 159 (355)
Q Consensus 84 L~~L~~L~l~~~-~~~~--~~~~~~~l~-~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~ 159 (355)
+++|++|++.++ ...+ ....+..++ .|+.|. ++++.. .+..
T Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~------------l~~~~~------------------~~~~----- 211 (336)
T 2ast_B 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN------------LSGYRK------------------NLQK----- 211 (336)
T ss_dssp CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE------------CCSCGG------------------GSCH-----
T ss_pred CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE------------eCCCcc------------------cCCH-----
Confidence 999999999877 5543 233345555 555555 332210 0000
Q ss_pred ccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCcee
Q 036143 160 IVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEI 239 (355)
Q Consensus 160 ~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i 239 (355)
..++... ..+++|++|++++|..+++.... .+..+++|++|++++|......
T Consensus 212 ------------------~~l~~~~---------~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 212 ------------------SDLSTLV---------RRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp ------------------HHHHHHH---------HHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGG
T ss_pred ------------------HHHHHHH---------hhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHH
Confidence 0000100 35678999999999756653333 3678899999999988633211
Q ss_pred cccCcchhhhhcccccccccCcccceeecccccccceecCCC-ceecCCCceEEEEcCCCCccccc
Q 036143 240 VEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDN-AVLICNSLQEIQITPSCPKLKRL 304 (355)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~-~~l~~~~L~~L~i~~~c~~L~~l 304 (355)
. ...+..+++|++|++.+| +.... ..+. .+|+.|++ +|+.+...
T Consensus 264 ~-------------~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~-~~l~~L~l--~~n~l~~~ 308 (336)
T 2ast_B 264 T-------------LLELGEIPTLKTLQVFGI-----VPDGTLQLLK-EALPHLQI--NCSHFTTI 308 (336)
T ss_dssp G-------------GGGGGGCTTCCEEECTTS-----SCTTCHHHHH-HHSTTSEE--SCCCSCCT
T ss_pred H-------------HHHHhcCCCCCEEeccCc-----cCHHHHHHHH-hhCcceEE--ecccCccc
Confidence 0 014567999999999988 22210 1121 13455556 56666654
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.49 E-value=3.8e-14 Score=127.15 Aligned_cols=224 Identities=15% Similarity=0.054 Sum_probs=138.5
Q ss_pred CC-ccccccccceecCCCcccc--ccCcccc-------cCcccceecccCcccc-cccchhh-hcCCCcceeeecccCCc
Q 036143 5 VP-SLAKLLALQCLDLEYTAIK--EVPEGME-------MLENLVHLTIYSKMLI-KFPAGIL-PKLCNLYSLRLNWGSET 72 (355)
Q Consensus 5 lP-~i~~l~~L~~L~L~~~~~~--~lP~~i~-------~L~~L~~L~l~~~~~~-~lP~~i~-~~L~~L~~L~l~~~~~~ 72 (355)
+| .+... |++|++++|.+. .+|..+. ++.+|++|++++|.+. .+|..++ +.+++|++|+++++...
T Consensus 57 ~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 134 (312)
T 1wwl_A 57 DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134 (312)
T ss_dssp CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS
T ss_pred cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc
Confidence 36 55544 888888888774 4666665 6788888888888776 5676643 77888888888876442
Q ss_pred cccchhHhhccc-----ccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccc------ccee--cc
Q 036143 73 SRETVQEAARSS-----DRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRF------YSFL--RT 138 (355)
Q Consensus 73 ~~~~~~~~l~~L-----~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~------~~~l--~~ 138 (355)
.. .. .++.+ ++|++|++..+...... ..++.++.|+.|. ++++.. +..+ ..
T Consensus 135 -~~-~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~------------Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 135 -TR-DA-WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD------------LSDNPELGERGLISALCPLK 199 (312)
T ss_dssp -SS-SS-HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEE------------CCSCTTCHHHHHHHHSCTTS
T ss_pred -ch-hH-HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEE------------CCCCCcCcchHHHHHHHhcc
Confidence 22 22 56665 78888888877776655 5567777777776 322221 1111 22
Q ss_pred cCCccEEEEeccCCccCCCccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHH
Q 036143 139 REANKSVCFYGCKICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQL 218 (355)
Q Consensus 139 ~~~~~~~~L~~l~~~~~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 218 (355)
...++.++++++.+... +..+. . ....+++|++|+++++ +++...+...
T Consensus 200 l~~L~~L~L~~N~l~~~-------------------------~~~~~---~--~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 248 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETP-------------------------SGVCS---A--LAAARVQLQGLDLSHN-SLRDAAGAPS 248 (312)
T ss_dssp CTTCCEEECTTSCCCCH-------------------------HHHHH---H--HHHTTCCCSEEECTTS-CCCSSCCCSC
T ss_pred CCCCCEEECCCCcCcch-------------------------HHHHH---H--HHhcCCCCCEEECCCC-cCCcccchhh
Confidence 23344445544443311 00000 0 0024678999999998 4555333222
Q ss_pred HhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCC
Q 036143 219 LAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSC 298 (355)
Q Consensus 219 l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c 298 (355)
+..+++|+.|+++++. +.+++. .+. ++|++|+++++ .++.++. ...+++|++|++. +.
T Consensus 249 ~~~l~~L~~L~Ls~N~-l~~ip~--------------~~~--~~L~~L~Ls~N-~l~~~p~---~~~l~~L~~L~L~-~N 306 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTG-LKQVPK--------------GLP--AKLSVLDLSYN-RLDRNPS---PDELPQVGNLSLK-GN 306 (312)
T ss_dssp CCCCTTCCEEECTTSC-CSSCCS--------------SCC--SEEEEEECCSS-CCCSCCC---TTTSCEEEEEECT-TC
T ss_pred hhhcCCCCEEECCCCc-cChhhh--------------hcc--CCceEEECCCC-CCCCChh---HhhCCCCCEEecc-CC
Confidence 4567899999999754 446654 333 89999999987 4565532 2235689999986 54
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.49 E-value=3e-13 Score=119.03 Aligned_cols=95 Identities=11% Similarity=0.000 Sum_probs=71.3
Q ss_pred eecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEec
Q 036143 16 CLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFS 95 (355)
Q Consensus 16 ~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 95 (355)
+.+..+.++..+|..+. .+|++|++++|.+..+|...++++++|++|+++++.. ...... .++.+++|++|++..+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~-~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDG-AYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC-CEECTT-TTTTCTTCCEEECTTC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcC-CccCHH-HccCCcCCCEEECCCC
Confidence 45556667888998775 5899999999999999885449999999999998754 333333 6889999999999877
Q ss_pred cCcccc-ccccccccccccc
Q 036143 96 KLDDFN-TYVKSSDGQRSKH 114 (355)
Q Consensus 96 ~~~~~~-~~~~~l~~L~~L~ 114 (355)
...... ..+..+..|+.|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEE
T ss_pred ccCccChhhhcCCccccEEE
Confidence 665544 3455566666555
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.49 E-value=2.9e-13 Score=118.81 Aligned_cols=187 Identities=19% Similarity=0.173 Sum_probs=129.5
Q ss_pred CCCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
+++.+| .+. .+|++|++++|.++.+|. .++++.+|++|++++|.+..+|.++++++++|++|+++++.. ......
T Consensus 27 ~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~ 103 (270)
T 2o6q_A 27 KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL-QALPIG 103 (270)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC-CCCCTT
T ss_pred CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC-CcCCHh
Confidence 366788 564 689999999999998865 689999999999999999999998778999999999998654 333333
Q ss_pred HhhcccccccceEEEeccCccccc-cccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCC
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREG 157 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~ 157 (355)
.+..+++|++|++..+....... .++.++.|+.|. + +++.+...
T Consensus 104 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------L--------------------s~n~l~~~-- 148 (270)
T 2o6q_A 104 -VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS------------L--------------------GYNELQSL-- 148 (270)
T ss_dssp -TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE------------C--------------------CSSCCCCC--
T ss_pred -HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE------------C--------------------CCCcCCcc--
Confidence 67889999999998776655432 234444444444 2 22222110
Q ss_pred ccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCc
Q 036143 158 VTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNE 237 (355)
Q Consensus 158 ~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~ 237 (355)
+.. ....+++|++|+++++ +++.+.+. .+..+++|++|+++++ .+.
T Consensus 149 -----------------------~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~ 194 (270)
T 2o6q_A 149 -----------------------PKG--------VFDKLTSLKELRLYNN-QLKRVPEG-AFDKLTELKTLKLDNN-QLK 194 (270)
T ss_dssp -----------------------CTT--------TTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSS-CCS
T ss_pred -----------------------CHh--------HccCCcccceeEecCC-cCcEeChh-HhccCCCcCEEECCCC-cCC
Confidence 000 0035678888888888 55554332 2567888888888875 444
Q ss_pred eecccCcchhhhhcccccccccCcccceeeccccc
Q 036143 238 EIVEVNDEETQKELGISAITITLPRLKKLWLSFLP 272 (355)
Q Consensus 238 ~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 272 (355)
.++. ..+..+++|++|++.+++
T Consensus 195 ~~~~-------------~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 195 RVPE-------------GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCT-------------TTTTTCTTCCEEECCSSC
T ss_pred cCCH-------------HHhccccCCCEEEecCCC
Confidence 4442 145577888888888765
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=1.1e-13 Score=121.56 Aligned_cols=187 Identities=17% Similarity=0.158 Sum_probs=132.2
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.++.++.+++|++|++++|.+..++ .++.+++|++|++++|.+..+|...++++++|++|++++|.. ...... .+
T Consensus 53 i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~ 129 (272)
T 3rfs_A 53 IKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDG-VF 129 (272)
T ss_dssp CCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTT-TT
T ss_pred cccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcC-CccCHH-Hh
Confidence 456678899999999999999998875 789999999999999999999888669999999999998754 333333 58
Q ss_pred cccccccceEEEeccCcccccc-ccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccc
Q 036143 82 RSSDRLDTFVGYFSKLDDFNTY-VKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTI 160 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~ 160 (355)
+.+++|++|++..+........ ++.++.|+.|. + .++.+.+...
T Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~------------l--------------------~~n~l~~~~~--- 174 (272)
T 3rfs_A 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD------------L--------------------SYNQLQSLPE--- 174 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE------------C--------------------CSSCCCCCCT---
T ss_pred ccCCCCCEEECCCCccCccCHHHhccCccCCEEE------------C--------------------CCCCcCccCH---
Confidence 8999999999987776655432 34555555554 2 2222221100
Q ss_pred cCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceec
Q 036143 161 VLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIV 240 (355)
Q Consensus 161 ~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~ 240 (355)
.. ...+++|++|+++++ +++.+.+ ..+..+++|+.|++++++-.
T Consensus 175 ---------------------~~---------~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~---- 218 (272)
T 3rfs_A 175 ---------------------GV---------FDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNPWD---- 218 (272)
T ss_dssp ---------------------TT---------TTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSCBC----
T ss_pred ---------------------HH---------hcCCccCCEEECCCC-cCCccCH-HHHhCCcCCCEEEccCCCcc----
Confidence 00 035678899999988 5555443 23677899999999876421
Q ss_pred ccCcchhhhhcccccccccCcccceeecccccccceecC
Q 036143 241 EVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCS 279 (355)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 279 (355)
+.+|+|+.|.+..+..-+.++.
T Consensus 219 -----------------~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 219 -----------------CTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp -----------------CCTTTTHHHHHHHHHTGGGBBC
T ss_pred -----------------ccCcHHHHHHHHHHhCCCcccC
Confidence 2566777777766554445544
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=1.2e-13 Score=131.50 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=80.1
Q ss_pred CCCCC--ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .++.+++|++|+|++|.++.++. ++.+++|++|++++|.+..+|. .++|++|++++|... . ++
T Consensus 46 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~-~--~~- 115 (487)
T 3oja_A 46 LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNIS-R--VS- 115 (487)
T ss_dssp CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCC-C--EE-
T ss_pred CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCC-C--CC-
Confidence 45555 79999999999999999987664 9999999999999999887764 389999999987542 2 22
Q ss_pred hhcccccccceEEEeccCcccc-ccccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~ 114 (355)
...+++|++|++..+...... ..++.++.|+.|.
T Consensus 116 -~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 150 (487)
T 3oja_A 116 -CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150 (487)
T ss_dssp -ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE
T ss_pred -ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE
Confidence 235688999999888776653 4566677777666
No 82
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=1.4e-13 Score=133.90 Aligned_cols=102 Identities=17% Similarity=0.168 Sum_probs=79.6
Q ss_pred CCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccc
Q 036143 5 VPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSS 84 (355)
Q Consensus 5 lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L 84 (355)
++.+..+.+|++|++++|.+..+| .++.+.+|++|++++|.+..+|. + +++++|++|++++|.. ..++ .++.+
T Consensus 36 ~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l---~~l~-~l~~l 108 (605)
T 1m9s_A 36 AVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-L-TNLKNLGWLFLDENKI---KDLS-SLKDL 108 (605)
T ss_dssp EECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-G-GGCTTCCEEECCSSCC---CCCT-TSTTC
T ss_pred ccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-h-ccCCCCCEEECcCCCC---CCCh-hhccC
Confidence 335667889999999999988887 68899999999999998888887 5 9999999999998755 3455 78889
Q ss_pred ccccceEEEeccCccccccccccccccccc
Q 036143 85 DRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 85 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
++|++|++..+.+... ..+..++.|+.|.
T Consensus 109 ~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~ 137 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDI-NGLVHLPQLESLY 137 (605)
T ss_dssp TTCCEEECTTSCCCCC-GGGGGCTTCSEEE
T ss_pred CCCCEEEecCCCCCCC-ccccCCCccCEEE
Confidence 9999999876666543 3355555555555
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.41 E-value=2.4e-12 Score=117.34 Aligned_cols=213 Identities=13% Similarity=0.061 Sum_probs=138.2
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
.+|.+.. ++++.++++++++|..+. .++++|++++|.++.+|.+.|+++++|++|+++++......... .+.++++
T Consensus 5 ~~C~C~~-~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~-~f~~L~~ 80 (350)
T 4ay9_X 5 RICHCSN-RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD-VFSNLPK 80 (350)
T ss_dssp SSSEEET-TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT-SBCSCTT
T ss_pred CccEeeC-CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh-Hhhcchh
Confidence 4566654 677778888999998773 58899999999999999876699999999999987543322223 5677888
Q ss_pred ccceEEE-eccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCch
Q 036143 87 LDTFVGY-FSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPK 164 (355)
Q Consensus 87 L~~L~l~-~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~ 164 (355)
|+++... .+...... ..++.++.|+.|. +.++.+......
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~--------------------------------l~~n~l~~~~~~------ 122 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLL--------------------------------ISNTGIKHLPDV------ 122 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEE--------------------------------EEEECCSSCCCC------
T ss_pred hhhhhcccCCcccccCchhhhhcccccccc--------------------------------ccccccccCCch------
Confidence 7765543 44444433 2344555555444 222222111000
Q ss_pred hHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhc-CCCCeEEEecCCCCceecccC
Q 036143 165 DVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAAL-QNLEFLVVQSCNRNEEIVEVN 243 (355)
Q Consensus 165 ~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L-~~L~~L~l~~~~~l~~i~~~~ 243 (355)
.. ....++..+.+.++.+++.+.... +..+ ..++.|++++ +.++++..
T Consensus 123 -------------------~~--------~~~~~l~~l~l~~~~~i~~l~~~~-f~~~~~~l~~L~L~~-N~i~~i~~-- 171 (350)
T 4ay9_X 123 -------------------HK--------IHSLQKVLLDIQDNINIHTIERNS-FVGLSFESVILWLNK-NGIQEIHN-- 171 (350)
T ss_dssp -------------------TT--------CCBSSCEEEEEESCTTCCEECTTS-STTSBSSCEEEECCS-SCCCEECT--
T ss_pred -------------------hh--------cccchhhhhhhccccccccccccc-hhhcchhhhhhcccc-ccccCCCh--
Confidence 00 122345667777776666654332 3333 4678888885 55677764
Q ss_pred cchhhhhcccccccccCcccceeecccccccceecCCCcee-cCCCceEEEEcCCCCccccccCCC
Q 036143 244 DEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVL-ICNSLQEIQITPSCPKLKRLSLRL 308 (355)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l-~~~~L~~L~i~~~c~~L~~lp~~~ 308 (355)
.....++|++|.+.++..++.++. +++ .+++|++|++. ++ +++.+|.+.
T Consensus 172 ------------~~f~~~~L~~l~l~~~n~l~~i~~--~~f~~l~~L~~LdLs-~N-~l~~lp~~~ 221 (350)
T 4ay9_X 172 ------------SAFNGTQLDELNLSDNNNLEELPN--DVFHGASGPVILDIS-RT-RIHSLPSYG 221 (350)
T ss_dssp ------------TSSTTEEEEEEECTTCTTCCCCCT--TTTTTEECCSEEECT-TS-CCCCCCSSS
T ss_pred ------------hhccccchhHHhhccCCcccCCCH--HHhccCcccchhhcC-CC-CcCccChhh
Confidence 444667999999998889999987 443 25699999996 54 799998653
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.40 E-value=4e-14 Score=130.81 Aligned_cols=247 Identities=14% Similarity=0.062 Sum_probs=137.3
Q ss_pred CCC-ccccccccceecCCCccccc-----cCcccccCcccceecccCccccc----ccchh------hhcCCCcceeeec
Q 036143 4 RVP-SLAKLLALQCLDLEYTAIKE-----VPEGMEMLENLVHLTIYSKMLIK----FPAGI------LPKLCNLYSLRLN 67 (355)
Q Consensus 4 ~lP-~i~~l~~L~~L~L~~~~~~~-----lP~~i~~L~~L~~L~l~~~~~~~----lP~~i------~~~L~~L~~L~l~ 67 (355)
.++ .+..+++|++|+|++|.+.. ++..+..+++|++|++++|.+.. +|.++ +.++++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 455 67788899999999997763 44557789999999999986553 34443 2688999999999
Q ss_pred ccCCccc--cchhHhhcccccccceEEEeccCccc-----ccccccc---------ccccccccccccceeEeecCCCcc
Q 036143 68 WGSETSR--ETVQEAARSSDRLDTFVGYFSKLDDF-----NTYVKSS---------DGQRSKHFHFQVSTVYNGSAANTR 131 (355)
Q Consensus 68 ~~~~~~~--~~~~~~l~~L~~L~~L~l~~~~~~~~-----~~~~~~l---------~~L~~L~~~~~~~~~~~~~~~~~~ 131 (355)
++..... ..++..+..+++|++|++..+.+... ...+..+ +.|+.|. +....++...
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~-------L~~n~l~~~~ 175 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII-------CGRNRLENGS 175 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE-------CCSSCCTGGG
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE-------CCCCCCCcHH
Confidence 8654221 12333788899999999987766421 1112222 4555555 1112222111
Q ss_pred cc---ceecccCCccEEEEeccCCccCCCccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCC
Q 036143 132 FY---SFLRTREANKSVCFYGCKICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCP 208 (355)
Q Consensus 132 ~~---~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 208 (355)
.+ ..+.....++.+.+.++.+... .+..++ +.. ...+++|++|++++|.
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~---------g~~~l~----------~~~---------l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPE---------GIEHLL----------LEG---------LAYCQELKVLDLQDNT 227 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHH---------HHHHHH----------HTT---------GGGCTTCCEEECCSSC
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHh---------HHHHHH----------HHH---------hhcCCCccEEECcCCC
Confidence 11 1122233444455544443311 000000 000 1356778888888884
Q ss_pred Ccccc---chHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhccccccc--ccCcccceeecccccccc----eecC
Q 036143 209 NLQKL---FSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAIT--ITLPRLKKLWLSFLPELK----SVCS 279 (355)
Q Consensus 209 ~l~~~---~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~----~i~~ 279 (355)
++.. .....+..+++|++|++++|........ .++..+ +.+++|++|++++|..-. .++.
T Consensus 228 -l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~----------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~ 296 (386)
T 2ca6_A 228 -FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA----------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296 (386)
T ss_dssp -CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH----------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH----------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence 4311 1112356778888888887653222000 000122 347888888888874322 1332
Q ss_pred CCce-ecCCCceEEEEcCCCC
Q 036143 280 DNAV-LICNSLQEIQITPSCP 299 (355)
Q Consensus 280 ~~~~-l~~~~L~~L~i~~~c~ 299 (355)
.. ..+++|++|++. +|+
T Consensus 297 --~l~~~l~~L~~L~l~-~N~ 314 (386)
T 2ca6_A 297 --VIDEKMPDLLFLELN-GNR 314 (386)
T ss_dssp --HHHHHCTTCCEEECT-TSB
T ss_pred --HHHhcCCCceEEEcc-CCc
Confidence 12 125788888887 664
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.40 E-value=1.4e-12 Score=115.63 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=115.9
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.+|.++.+++|++|++++|.++.++. ++.+.+|++|++++|.+..+|. + +.+++|++|++++|.. ..++ .+
T Consensus 58 i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l-~~l~~L~~L~L~~n~i---~~~~-~l 130 (291)
T 1h6t_A 58 IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-L-KDLKKLKSLSLEHNGI---SDIN-GL 130 (291)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-G-TTCTTCCEEECTTSCC---CCCG-GG
T ss_pred cccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-h-ccCCCCCEEECCCCcC---CCCh-hh
Confidence 5667888999999999999999998876 9999999999999999998876 5 9999999999999765 3346 89
Q ss_pred cccccccceEEEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCcccc
Q 036143 82 RSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIV 161 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~ 161 (355)
..+++|++|++..+..... ..+..++.|+.|. ++++.+.+
T Consensus 131 ~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~--------------------------------L~~N~l~~------- 170 (291)
T 1h6t_A 131 VHLPQLESLYLGNNKITDI-TVLSRLTKLDTLS--------------------------------LEDNQISD------- 170 (291)
T ss_dssp GGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEE--------------------------------CCSSCCCC-------
T ss_pred cCCCCCCEEEccCCcCCcc-hhhccCCCCCEEE--------------------------------ccCCcccc-------
Confidence 9999999999987766544 3344444444444 22222211
Q ss_pred CchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCC
Q 036143 162 LPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCN 234 (355)
Q Consensus 162 ~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~ 234 (355)
++.+ ..+++|++|+++++ .++.+.. +..+++|+.|+++++.
T Consensus 171 ------------------~~~l----------~~l~~L~~L~L~~N-~i~~l~~---l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 171 ------------------IVPL----------AGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQE 211 (291)
T ss_dssp ------------------CGGG----------TTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEEEE
T ss_pred ------------------chhh----------cCCCccCEEECCCC-cCCCChh---hccCCCCCEEECcCCc
Confidence 1111 35678899999888 5666432 6788899999998654
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.39 E-value=2.4e-12 Score=114.10 Aligned_cols=197 Identities=14% Similarity=0.098 Sum_probs=124.1
Q ss_pred cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEeccCccccccccccccc
Q 036143 31 MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFSKLDDFNTYVKSSDGQ 110 (355)
Q Consensus 31 i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L 110 (355)
++++.++++++++++.++.+|.++ . +++++|+++++.. ...... .+..+++|++|++..+.+...... +.++.|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~--~~l~~L~L~~N~l-~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-P--KDTTILHLSENLL-YTFSLA-TLMPYTRLTQLNLDRAELTKLQVD-GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-C--TTCCEEECTTSCC-SEEEGG-GGTTCTTCCEEECTTSCCCEEECC-SCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCCC-C--CCCCEEEcCCCcC-CccCHH-HhhcCCCCCEEECCCCccCcccCC-CCCCcC
Confidence 678889999999999999999977 4 7899999998654 333344 799999999999976665543322 344444
Q ss_pred cccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCchhHHHHHhhcccccccccccccccccc
Q 036143 111 RSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGL 190 (355)
Q Consensus 111 ~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~ 190 (355)
+.|. ++++.+.. ++...
T Consensus 80 ~~L~--------------------------------Ls~N~l~~-------------------------l~~~~------ 96 (290)
T 1p9a_G 80 GTLD--------------------------------LSHNQLQS-------------------------LPLLG------ 96 (290)
T ss_dssp CEEE--------------------------------CCSSCCSS-------------------------CCCCT------
T ss_pred CEEE--------------------------------CCCCcCCc-------------------------Cchhh------
Confidence 4444 22222111 11100
Q ss_pred cccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccc
Q 036143 191 VNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSF 270 (355)
Q Consensus 191 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 270 (355)
..+++|++|+++++ +++.+.+. .+..+++|+.|+++++ .+..++. ..+..+++|++|++++
T Consensus 97 ---~~l~~L~~L~l~~N-~l~~l~~~-~~~~l~~L~~L~L~~N-~l~~~~~-------------~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 97 ---QTLPALTVLDVSFN-RLTSLPLG-ALRGLGELQELYLKGN-ELKTLPP-------------GLLTPTPKLEKLSLAN 157 (290)
T ss_dssp ---TTCTTCCEEECCSS-CCCCCCSS-TTTTCTTCCEEECTTS-CCCCCCT-------------TTTTTCTTCCEEECTT
T ss_pred ---ccCCCCCEEECCCC-cCcccCHH-HHcCCCCCCEEECCCC-CCCccCh-------------hhcccccCCCEEECCC
Confidence 34566777777777 45543322 2566777777777764 3444432 0345677777777777
Q ss_pred ccccceecCCCceec-CCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEeh
Q 036143 271 LPELKSVCSDNAVLI-CNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIR 328 (355)
Q Consensus 271 ~~~l~~i~~~~~~l~-~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~ 328 (355)
+ .++.++. +.+. +++|++|++. ...++.+|.++.... +|+.+++.
T Consensus 158 N-~l~~l~~--~~~~~l~~L~~L~L~--~N~l~~ip~~~~~~~--------~L~~l~L~ 203 (290)
T 1p9a_G 158 N-NLTELPA--GLLNGLENLDTLLLQ--ENSLYTIPKGFFGSH--------LLPFAFLH 203 (290)
T ss_dssp S-CCSCCCT--TTTTTCTTCCEEECC--SSCCCCCCTTTTTTC--------CCSEEECC
T ss_pred C-cCCccCH--HHhcCcCCCCEEECC--CCcCCccChhhcccc--------cCCeEEeC
Confidence 6 4556555 3332 5677777774 346677777665443 67777773
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.37 E-value=2.6e-12 Score=111.37 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=72.9
Q ss_pred ccc-cccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccc
Q 036143 9 AKL-LALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRL 87 (355)
Q Consensus 9 ~~l-~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 87 (355)
+.+ ...++++++++.++.+|..+. .++++|++++|.+..++...++++++|++|+++++.. ...... .+..+++|
T Consensus 10 C~C~~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~~~l~~L 85 (251)
T 3m19_A 10 CTCNEGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAG-VFDDLTEL 85 (251)
T ss_dssp SEEEGGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTT-TTTTCTTC
T ss_pred eEcCCCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC-CccCHh-HhccCCcC
Confidence 444 567889999998989988776 5889999999988888776458899999999988644 333333 57888889
Q ss_pred cceEEEeccCccccc-cccccccccccc
Q 036143 88 DTFVGYFSKLDDFNT-YVKSSDGQRSKH 114 (355)
Q Consensus 88 ~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 114 (355)
++|++..+.+..... .++.+..|+.|.
T Consensus 86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 86 GTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEECCCCcccccChhHhcccCCCCEEE
Confidence 888887666654432 234444444444
No 88
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.36 E-value=4.1e-14 Score=137.89 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=57.0
Q ss_pred cCCCccEEeeccCCC-ccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 195 KFSHLKALWFSYCPN-LQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 195 ~~~~L~~L~l~~~~~-l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
.+++|++|+++.|.+ +.+.........+++|+.|++++|...... .......+++|++|++++|+
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-------------~~~~~~~~~~L~~L~l~~n~- 499 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG-------------LMEFSRGCPNLQKLEMRGCC- 499 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH-------------HHHHHTCCTTCCEEEEESCC-
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH-------------HHHHHhcCcccCeeeccCCC-
Confidence 356666666665543 333222222233666777777655421111 01133567888888888886
Q ss_pred cceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEe
Q 036143 274 LKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKI 327 (355)
Q Consensus 274 l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~ 327 (355)
+...........+++|++|++. +|. +... ++..+. ..+|.+....+
T Consensus 500 l~~~~~~~~~~~l~~L~~L~ls-~n~-it~~--~~~~l~----~~~p~l~~~~~ 545 (592)
T 3ogk_B 500 FSERAIAAAVTKLPSLRYLWVQ-GYR-ASMT--GQDLMQ----MARPYWNIELI 545 (592)
T ss_dssp CBHHHHHHHHHHCSSCCEEEEE-SCB-CCTT--CTTGGG----GCCTTEEEEEE
T ss_pred CcHHHHHHHHHhcCccCeeECc-CCc-CCHH--HHHHHH----HhCCCcEEEEe
Confidence 3321110012236788888888 886 4332 333332 34556666544
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=2.3e-12 Score=125.39 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=86.8
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.+|.++.+++|++|+|++|.+..+|. ++.+.+|++|++++|.+..+| .+ +.+++|++|++++|.. ..++ .+
T Consensus 55 i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l-~~l~~L~~L~Ls~N~l---~~l~-~l 127 (605)
T 1m9s_A 55 IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SL-KDLKKLKSLSLEHNGI---SDIN-GL 127 (605)
T ss_dssp CCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TS-TTCTTCCEEECTTSCC---CCCG-GG
T ss_pred CCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hh-ccCCCCCEEEecCCCC---CCCc-cc
Confidence 5667889999999999999999998876 999999999999999999887 56 9999999999999765 3356 79
Q ss_pred cccccccceEEEeccCccccccccccccccccc
Q 036143 82 RSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
..|++|+.|++..+..... ..+..+..|+.|.
T Consensus 128 ~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 128 VHLPQLESLYLGNNKITDI-TVLSRLTKLDTLS 159 (605)
T ss_dssp GGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEE
T ss_pred cCCCccCEEECCCCccCCc-hhhcccCCCCEEE
Confidence 9999999999987766554 3444555555444
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.35 E-value=5.1e-12 Score=109.55 Aligned_cols=109 Identities=18% Similarity=0.209 Sum_probs=85.5
Q ss_pred CCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+. .++++|++++|.+..++. .++++.+|++|++++|.+..++.+.++.+++|++|+++++.. ......
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~- 101 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLG- 101 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTT-
T ss_pred ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc-cccChh-
Confidence 67788 665 689999999999997754 689999999999999999998887669999999999998654 333333
Q ss_pred hhcccccccceEEEeccCcccccc-ccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNTY-VKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~ 114 (355)
.++.+++|++|++..+.+...... +..+..|+.|.
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 678999999999987777655433 34455555444
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.34 E-value=2e-12 Score=107.80 Aligned_cols=77 Identities=10% Similarity=0.045 Sum_probs=45.8
Q ss_pred ccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEeccCcc-ccccccccccc
Q 036143 32 EMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFSKLDD-FNTYVKSSDGQ 110 (355)
Q Consensus 32 ~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~-~~~~~~~l~~L 110 (355)
+.+.+|++|++++|.+..+| ++ ..+++|++|++++|.. ..++ .+..+++|++|++..+.... .+..++.++.|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~l~~n~~---~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GI-EYAHNIKDLTINNIHA---TNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TG-GGCTTCSEEEEESCCC---SCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCccChH-HH-hcCCCCCEEEccCCCC---Ccch-hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 56666777777777666666 45 6777777777766532 3344 56667777777776655543 22334444444
Q ss_pred cccc
Q 036143 111 RSKH 114 (355)
Q Consensus 111 ~~L~ 114 (355)
+.|.
T Consensus 115 ~~L~ 118 (197)
T 4ezg_A 115 TLLD 118 (197)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 4444
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.34 E-value=5.4e-12 Score=112.94 Aligned_cols=228 Identities=16% Similarity=0.106 Sum_probs=141.6
Q ss_pred ccceecCCCcccc--ccCc--ccccCcccceecccCcccccc-cchhh-hcCCCcceeeecccCCccccc-hh-Hhhccc
Q 036143 13 ALQCLDLEYTAIK--EVPE--GMEMLENLVHLTIYSKMLIKF-PAGIL-PKLCNLYSLRLNWGSETSRET-VQ-EAARSS 84 (355)
Q Consensus 13 ~L~~L~L~~~~~~--~lP~--~i~~L~~L~~L~l~~~~~~~l-P~~i~-~~L~~L~~L~l~~~~~~~~~~-~~-~~l~~L 84 (355)
.++.+.+.++.+. .+.. ....+.+|++|++++|.+... |..++ +++++|++|+++++....... .+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4566777776553 1211 123456799999999987754 44433 789999999999875432111 11 256789
Q ss_pred ccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCc
Q 036143 85 DRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLP 163 (355)
Q Consensus 85 ~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~ 163 (355)
++|++|++..+...... ..++.++.|+.|. +++ +.+.+..
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~------------Ls~--------------------N~l~~~~------- 185 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLD------------LSD--------------------NPGLGER------- 185 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEE------------CCS--------------------CTTCHHH-------
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEE------------CCC--------------------CCCccch-------
Confidence 99999999888775544 3455555555555 222 2111100
Q ss_pred hhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchH--HHHhhcCCCCeEEEecCCCCceecc
Q 036143 164 KDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSL--QLLAALQNLEFLVVQSCNRNEEIVE 241 (355)
Q Consensus 164 ~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~l~~L~~L~~L~l~~~~~l~~i~~ 241 (355)
.++... ..+.+++|++|++++| +++.+... ..+..+++|++|+++++.-....+.
T Consensus 186 ---------------~~~~~~-------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 186 ---------------GLMAAL-------CPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp ---------------HHHTTS-------CTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred ---------------hhhHHH-------hhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 000000 0036788999999998 56543332 1246789999999997654333232
Q ss_pred cCcchhhhhccccccccc---CcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCC
Q 036143 242 VNDEETQKELGISAITIT---LPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSP 318 (355)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~ 318 (355)
.+.. +++|++|+++++ .++.++. .. +++|++|++. + .++..+|. ...
T Consensus 243 --------------~~~~~~~~~~L~~L~Ls~N-~l~~lp~--~~--~~~L~~L~Ls-~-N~l~~~~~-~~~-------- 292 (310)
T 4glp_A 243 --------------SAPRCMWSSALNSLNLSFA-GLEQVPK--GL--PAKLRVLDLS-S-NRLNRAPQ-PDE-------- 292 (310)
T ss_dssp --------------CCSSCCCCTTCCCEECCSS-CCCSCCS--CC--CSCCSCEECC-S-CCCCSCCC-TTS--------
T ss_pred --------------hHHhccCcCcCCEEECCCC-CCCchhh--hh--cCCCCEEECC-C-CcCCCCch-hhh--------
Confidence 2334 379999999987 4666655 23 3699999996 4 46777764 333
Q ss_pred CCCeeEEEehhhhh
Q 036143 319 SPALEVIKIRKELW 332 (355)
Q Consensus 319 ~~~L~~l~~~~~~~ 332 (355)
+++|+.+++..+.+
T Consensus 293 l~~L~~L~L~~N~l 306 (310)
T 4glp_A 293 LPEVDNLTLDGNPF 306 (310)
T ss_dssp CCCCSCEECSSTTT
T ss_pred CCCccEEECcCCCC
Confidence 45999999865543
No 93
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.33 E-value=1.8e-14 Score=136.11 Aligned_cols=88 Identities=18% Similarity=0.153 Sum_probs=50.8
Q ss_pred ccccccccceecCCCccccc-cCccc-ccCc----ccceecccCcccc-----cccchhhhcCCCcceeeecccCCcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKE-VPEGM-EMLE----NLVHLTIYSKMLI-----KFPAGILPKLCNLYSLRLNWGSETSRE 75 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~-lP~~i-~~L~----~L~~L~l~~~~~~-----~lP~~i~~~L~~L~~L~l~~~~~~~~~ 75 (355)
.+..+++|++|++++|.+.. .+..+ ..+. +|++|++++|.+. .+|..+ .++++|++|+++++.. ...
T Consensus 51 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i-~~~ 128 (461)
T 1z7x_W 51 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLL-GDA 128 (461)
T ss_dssp HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBC-HHH
T ss_pred HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHH-ccCCceeEEECCCCcC-chH
Confidence 45566778888887776653 23333 2344 5777777777666 345555 7777777777776542 222
Q ss_pred chhHhhc-----ccccccceEEEeccC
Q 036143 76 TVQEAAR-----SSDRLDTFVGYFSKL 97 (355)
Q Consensus 76 ~~~~~l~-----~L~~L~~L~l~~~~~ 97 (355)
.+. .+. ..++|++|++..+..
T Consensus 129 ~~~-~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 129 GLQ-LLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp HHH-HHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHH-HHHHHHhcCCCcceEEECCCCCC
Confidence 222 222 244566666655544
No 94
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.33 E-value=8.7e-14 Score=135.60 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=56.2
Q ss_pred ccccccceecCCCccccc-----cCcccccCcccceecccCccccc-----ccchhhhcCCCcceeeecccCCccccchh
Q 036143 9 AKLLALQCLDLEYTAIKE-----VPEGMEMLENLVHLTIYSKMLIK-----FPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 9 ~~l~~L~~L~L~~~~~~~-----lP~~i~~L~~L~~L~l~~~~~~~-----lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
..+++|++|++++|.+.. ++..+..+++|++|++++|.+.. ++.-+ .++++|++|++.+|.. ..++
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~---~~l~ 236 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEI---LELV 236 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEECSSCBG---GGGH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEeccCccH---HHHH
Confidence 367889999999887642 33344677888888888887652 33333 7788888888887543 2233
Q ss_pred HhhcccccccceEEE
Q 036143 79 EAARSSDRLDTFVGY 93 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~ 93 (355)
..++.+++|++|.+.
T Consensus 237 ~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 237 GFFKAAANLEEFCGG 251 (592)
T ss_dssp HHHHHCTTCCEEEEC
T ss_pred HHHhhhhHHHhhccc
Confidence 477778888888875
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.33 E-value=4.3e-13 Score=123.87 Aligned_cols=250 Identities=12% Similarity=0.028 Sum_probs=157.1
Q ss_pred cccceecCCCccccccCcccccCcccceecccCcccccc-----cchhhhcCCCcceeeecccCC--ccccchh------
Q 036143 12 LALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKF-----PAGILPKLCNLYSLRLNWGSE--TSRETVQ------ 78 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~l-----P~~i~~~L~~L~~L~l~~~~~--~~~~~~~------ 78 (355)
..|++..+....+..++..+..+++|++|++++|.+... +..+ .++++|++|++++|.. ..+..+.
T Consensus 9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~ 87 (386)
T 2ca6_A 9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENI-ASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87 (386)
T ss_dssp CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTT-TTCTTCCEEECCSCCTTSCGGGSHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHH-HhCCCccEEeCcccccCccccchhHHHHHHH
Confidence 345566666667778999999999999999999987753 3334 7899999999998632 1222122
Q ss_pred HhhcccccccceEEEeccCcc-----ccccccccccccccccccccceeEeecCCCccc----cceec----cc------
Q 036143 79 EAARSSDRLDTFVGYFSKLDD-----FNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRF----YSFLR----TR------ 139 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~----~~~l~----~~------ 139 (355)
..+..+++|++|+++.+.+.. ++..+..++.|+.|. ++++.. +..+. ..
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~------------L~~n~l~~~~~~~l~~~l~~l~~~~~~ 155 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY------------LHNNGLGPQAGAKIARALQELAVNKKA 155 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEE------------CCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEE------------CcCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence 134789999999998877655 334566677777776 333321 11111 11
Q ss_pred ---CCccEEEEeccCCccCCCccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccc--
Q 036143 140 ---EANKSVCFYGCKICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLF-- 214 (355)
Q Consensus 140 ---~~~~~~~L~~l~~~~~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~-- 214 (355)
..++.+.+.++.+... .+..+ .. ....+++|++|++++| +++...
T Consensus 156 ~~~~~L~~L~L~~n~l~~~---------~~~~l-----------~~---------~l~~~~~L~~L~L~~n-~l~~~g~~ 205 (386)
T 2ca6_A 156 KNAPPLRSIICGRNRLENG---------SMKEW-----------AK---------TFQSHRLLHTVKMVQN-GIRPEGIE 205 (386)
T ss_dssp HTCCCCCEEECCSSCCTGG---------GHHHH-----------HH---------HHHHCTTCCEEECCSS-CCCHHHHH
T ss_pred ccCCCCcEEECCCCCCCcH---------HHHHH-----------HH---------HHHhCCCcCEEECcCC-CCCHhHHH
Confidence 3444555555544321 01111 00 0034678999999999 555321
Q ss_pred -hHH-HHhhcCCCCeEEEecCCCC----ceecccCcchhhhhcccccccccCcccceeeccccccccee-----cCCCce
Q 036143 215 -SLQ-LLAALQNLEFLVVQSCNRN----EEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSV-----CSDNAV 283 (355)
Q Consensus 215 -~~~-~l~~L~~L~~L~l~~~~~l----~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-----~~~~~~ 283 (355)
... .+..+++|+.|+++++... ..++. .+..+++|++|++++|. +... .. ..
T Consensus 206 ~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~--------------~l~~~~~L~~L~L~~n~-i~~~~~~~l~~--~l 268 (386)
T 2ca6_A 206 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI--------------ALKSWPNLRELGLNDCL-LSARGAAAVVD--AF 268 (386)
T ss_dssp HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH--------------HGGGCTTCCEEECTTCC-CCHHHHHHHHH--HH
T ss_pred HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH--------------HHccCCCcCEEECCCCC-CchhhHHHHHH--HH
Confidence 112 3568999999999987632 33332 56788999999999985 3322 11 11
Q ss_pred --ecCCCceEEEEcCCCCcccc-----ccCCC-CCCCCCCCCCCCCeeEEEehhhh
Q 036143 284 --LICNSLQEIQITPSCPKLKR-----LSLRL-PPLDNGQPSPSPALEVIKIRKEL 331 (355)
Q Consensus 284 --l~~~~L~~L~i~~~c~~L~~-----lp~~~-~~l~~~~~~~~~~L~~l~~~~~~ 331 (355)
..+++|++|++. +|. +.. +|..+ .+++ +|+.|++..+.
T Consensus 269 ~~~~~~~L~~L~L~-~n~-i~~~g~~~l~~~l~~~l~--------~L~~L~l~~N~ 314 (386)
T 2ca6_A 269 SKLENIGLQTLRLQ-YNE-IELDAVRTLKTVIDEKMP--------DLLFLELNGNR 314 (386)
T ss_dssp HTCSSCCCCEEECC-SSC-CBHHHHHHHHHHHHHHCT--------TCCEEECTTSB
T ss_pred hhccCCCeEEEECc-CCc-CCHHHHHHHHHHHHhcCC--------CceEEEccCCc
Confidence 125799999997 764 444 77665 3333 89999985443
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.31 E-value=3.6e-12 Score=111.31 Aligned_cols=83 Identities=12% Similarity=0.168 Sum_probs=59.3
Q ss_pred cccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccc
Q 036143 10 KLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDT 89 (355)
Q Consensus 10 ~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 89 (355)
++.++..++++++.++.++ .+..+.+|++|++++|.+..+| ++ +.+++|++|+++++.. ..++ .++.+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~L~~N~i---~~~~-~l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GM-QFFTNLKELHLSHNQI---SDLS-PLKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCC---CCCG-GGTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HH-hhCCCCCEEECCCCcc---CCCh-hhccCCCCCE
Confidence 4666777777777777776 5777788888888888777777 55 7888888888877644 3344 3777788888
Q ss_pred eEEEeccCcc
Q 036143 90 FVGYFSKLDD 99 (355)
Q Consensus 90 L~l~~~~~~~ 99 (355)
|++..+....
T Consensus 90 L~L~~N~l~~ 99 (263)
T 1xeu_A 90 LSVNRNRLKN 99 (263)
T ss_dssp EECCSSCCSC
T ss_pred EECCCCccCC
Confidence 8876665544
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.26 E-value=2.1e-12 Score=118.23 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=60.1
Q ss_pred cccccccceecCCCccccccC-----cccccCc-ccceecccCcccccccchhhhcC-----CCcceeeecccCCccccc
Q 036143 8 LAKLLALQCLDLEYTAIKEVP-----EGMEMLE-NLVHLTIYSKMLIKFPAGILPKL-----CNLYSLRLNWGSETSRET 76 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~~~~lP-----~~i~~L~-~L~~L~l~~~~~~~lP~~i~~~L-----~~L~~L~l~~~~~~~~~~ 76 (355)
+...++|++|++++|.++..+ ..+..++ +|++|++++|.+.......+..+ ++|++|++++|.. ....
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-~~~~ 96 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL-SYKS 96 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGSC
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC-ChHH
Confidence 344556888888888887765 4567777 78888888887776644332554 8888888887653 2222
Q ss_pred hh---Hhhccc-ccccceEEEeccCcc
Q 036143 77 VQ---EAARSS-DRLDTFVGYFSKLDD 99 (355)
Q Consensus 77 ~~---~~l~~L-~~L~~L~l~~~~~~~ 99 (355)
.. ..+..+ ++|++|++..+....
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 22 123334 788888887666544
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.23 E-value=2.8e-11 Score=103.39 Aligned_cols=109 Identities=20% Similarity=0.184 Sum_probs=91.0
Q ss_pred CCCCC-ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+. .+|++|++++|.+..+ |..++.+.+|++|++++|.+..+|.+.++.+++|++|+++++.. ......
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l-~~l~~~- 106 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL-TVLPSA- 106 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-
T ss_pred cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC-CccChh-
Confidence 56788 554 8999999999999977 67789999999999999999999988769999999999998754 333222
Q ss_pred hhcccccccceEEEeccCccccccccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
.+..+++|++|++..+.+..++..+..+..|+.|.
T Consensus 107 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 141 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLA 141 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEE
T ss_pred HhCcchhhCeEeccCCcccccCcccccCCCCCEEE
Confidence 57899999999999888887777778888888877
No 99
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.22 E-value=1.3e-12 Score=123.33 Aligned_cols=114 Identities=20% Similarity=0.258 Sum_probs=66.6
Q ss_pred CCCccEEeeccCCCccccc---hHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccc
Q 036143 196 FSHLKALWFSYCPNLQKLF---SLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLP 272 (355)
Q Consensus 196 ~~~L~~L~l~~~~~l~~~~---~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 272 (355)
.++|++|++++| .++... ....+..+++|++|+++++. +...... .. .......+++|++|++++|
T Consensus 198 ~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~---~l-----~~~~~~~~~~L~~L~L~~n- 266 (461)
T 1z7x_W 198 PCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMA---EL-----CPGLLHPSSRLRTLWIWEC- 266 (461)
T ss_dssp CCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHH---HH-----HHHHTSTTCCCCEEECTTS-
T ss_pred CCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHH---HH-----HHHHhcCCCCceEEECcCC-
Confidence 568999999999 455422 12335678999999999774 2221000 00 0001225789999999988
Q ss_pred ccce-----ecCCCceecCCCceEEEEcCCCCcccc-----ccCCCCCCCCCCCCCCCCeeEEEehhhh
Q 036143 273 ELKS-----VCSDNAVLICNSLQEIQITPSCPKLKR-----LSLRLPPLDNGQPSPSPALEVIKIRKEL 331 (355)
Q Consensus 273 ~l~~-----i~~~~~~l~~~~L~~L~i~~~c~~L~~-----lp~~~~~l~~~~~~~~~~L~~l~~~~~~ 331 (355)
.+.. +.. ....+++|++|++. +|. +.. ++..+. ...++|+.+++..+.
T Consensus 267 ~l~~~~~~~l~~--~l~~~~~L~~L~Ls-~n~-i~~~~~~~l~~~l~-------~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 267 GITAKGCGDLCR--VLRAKESLKELSLA-GNE-LGDEGARLLCETLL-------EPGCQLESLWVKSCS 324 (461)
T ss_dssp CCCHHHHHHHHH--HHHHCTTCCEEECT-TCC-CHHHHHHHHHHHHT-------STTCCCCEEECTTSC
T ss_pred CCCHHHHHHHHH--HHhhCCCcceEECC-CCC-CchHHHHHHHHHhc-------cCCccceeeEcCCCC
Confidence 4444 222 11126799999998 763 432 222221 123489999995443
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.21 E-value=1.7e-11 Score=104.11 Aligned_cols=109 Identities=15% Similarity=0.158 Sum_probs=81.4
Q ss_pred CCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+. .+|++|++++|.++.+|. .+..+.+|++|++++|.+..++.+.|+++++|++|+++++.. ......
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~- 98 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TELPKS- 98 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC-CCCCTT-
T ss_pred cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC-CccCHh-
Confidence 56777 554 688999999998887765 578889999999999988887443338899999999988654 222222
Q ss_pred hhcccccccceEEEeccCcccc-ccccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~ 114 (355)
.+..+++|++|++..+.+.... ..+..+..|+.|.
T Consensus 99 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence 4678889999998877776654 4466777777777
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.21 E-value=3e-13 Score=131.77 Aligned_cols=86 Identities=13% Similarity=0.090 Sum_probs=50.0
Q ss_pred cccccceecCCCc-cccc--cCcccccCcccceecccCcccccccch-h---hhcCCCcceeeecccC-CccccchhHhh
Q 036143 10 KLLALQCLDLEYT-AIKE--VPEGMEMLENLVHLTIYSKMLIKFPAG-I---LPKLCNLYSLRLNWGS-ETSRETVQEAA 81 (355)
Q Consensus 10 ~l~~L~~L~L~~~-~~~~--lP~~i~~L~~L~~L~l~~~~~~~lP~~-i---~~~L~~L~~L~l~~~~-~~~~~~~~~~l 81 (355)
.+++|++|++++| .++. ++..+..+++|++|++++|.+...... + ...+++|++|+++++. ......+..-+
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 4677888888877 5553 555455777888888887765432211 1 1355677777777654 11122233123
Q ss_pred cccccccceEEEec
Q 036143 82 RSSDRLDTFVGYFS 95 (355)
Q Consensus 82 ~~L~~L~~L~l~~~ 95 (355)
..+++|++|++..+
T Consensus 208 ~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 208 TRCPNLKSLKLNRA 221 (594)
T ss_dssp HHCTTCCEEECCTT
T ss_pred HhCCCCcEEecCCC
Confidence 44577777777544
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.20 E-value=3.7e-11 Score=100.12 Aligned_cols=103 Identities=20% Similarity=0.218 Sum_probs=67.0
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
+..++.+|++|++++|.+..+| .+..+.+|++|++++|.+..++ .+ +.+++|++|+++++.. ....+. .++.+++
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l-~~l~~L~~L~l~~n~l-~~~~~~-~l~~l~~ 113 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PI-SGLSNLERLRIMGKDV-TSDKIP-NLSGLTS 113 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GG-TTCTTCCEEEEECTTC-BGGGSC-CCTTCTT
T ss_pred ChhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hh-hcCCCCCEEEeECCcc-CcccCh-hhcCCCC
Confidence 4456677777777777777777 6777777777777777665554 44 7777777777776543 222334 6677777
Q ss_pred ccceEEEeccCcc-ccccccccccccccc
Q 036143 87 LDTFVGYFSKLDD-FNTYVKSSDGQRSKH 114 (355)
Q Consensus 87 L~~L~l~~~~~~~-~~~~~~~l~~L~~L~ 114 (355)
|++|++..+.... .+..++.++.|+.|.
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 7777776666554 234455666666665
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.20 E-value=1.9e-11 Score=99.08 Aligned_cols=100 Identities=21% Similarity=0.152 Sum_probs=62.8
Q ss_pred ccccceecCCCcccc--ccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccccc
Q 036143 11 LLALQCLDLEYTAIK--EVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLD 88 (355)
Q Consensus 11 l~~L~~L~L~~~~~~--~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 88 (355)
..+|++|++++|.+. .+|..++.+++|++|++++|.+..+ ..+ +.+++|++|++++|.... . ++..++.+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~~-~-~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNL-PKLPKLKKLELSENRIFG-G-LDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSC-CCCSSCCEEEEESCCCCS-C-CCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhh-ccCCCCCEEECcCCcCch-H-HHHHHhhCCCCC
Confidence 456777777777666 6676667777777777777766666 444 677777777777654321 1 332455577777
Q ss_pred ceEEEeccCcccc--ccccccccccccc
Q 036143 89 TFVGYFSKLDDFN--TYVKSSDGQRSKH 114 (355)
Q Consensus 89 ~L~l~~~~~~~~~--~~~~~l~~L~~L~ 114 (355)
+|++..+.+.... ..+..++.|+.|.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEE
Confidence 7777666665543 4455555565555
No 104
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.20 E-value=2.1e-11 Score=99.66 Aligned_cols=104 Identities=14% Similarity=0.088 Sum_probs=55.5
Q ss_pred CccccccccceecCCCccccccCcccccCc-ccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccc
Q 036143 6 PSLAKLLALQCLDLEYTAIKEVPEGMEMLE-NLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSS 84 (355)
Q Consensus 6 P~i~~l~~L~~L~L~~~~~~~lP~~i~~L~-~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L 84 (355)
|.+.++.+|++|++++|.++.+|. +..+. +|++|++++|.+..+ ..+ +.+++|++|+++++... .. .+..++.+
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l-~~l~~L~~L~Ls~N~l~-~~-~~~~~~~l 87 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGF-PLLRRLKTLLVNNNRIC-RI-GEGLDQAL 87 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCC-CCCSSCCEEECCSSCCC-EE-CSCHHHHC
T ss_pred HhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-ccc-ccCCCCCEEECCCCccc-cc-CcchhhcC
Confidence 344556666666666666665543 44433 666666666666655 334 66666666666654331 11 11023566
Q ss_pred ccccceEEEeccCccccc--cccccccccccc
Q 036143 85 DRLDTFVGYFSKLDDFNT--YVKSSDGQRSKH 114 (355)
Q Consensus 85 ~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~ 114 (355)
++|++|++..+.+..++. .++.++.|+.|.
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence 666666666555544433 344445555444
No 105
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.19 E-value=1.1e-11 Score=98.36 Aligned_cols=100 Identities=19% Similarity=0.169 Sum_probs=49.5
Q ss_pred ccccceecCCCcccc--ccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccccc
Q 036143 11 LLALQCLDLEYTAIK--EVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLD 88 (355)
Q Consensus 11 l~~L~~L~L~~~~~~--~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 88 (355)
..+|++|++++|.+. .+|..++.+.+|++|++++|.+..+ ..+ +.+++|++|++++|... .. ++..++.+++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~n~i~-~~-~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANL-PKLNKLKKLELSDNRVS-GG-LEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTC-CCCTTCCEEECCSSCCC-SC-THHHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhh-hcCCCCCEEECCCCccc-ch-HHHHhhhCCCCC
Confidence 345555555555554 5555555555555555555555555 333 55555555555554321 11 232344455555
Q ss_pred ceEEEeccCcccc--ccccccccccccc
Q 036143 89 TFVGYFSKLDDFN--TYVKSSDGQRSKH 114 (355)
Q Consensus 89 ~L~l~~~~~~~~~--~~~~~l~~L~~L~ 114 (355)
+|++..+...+.. ..++.++.|+.|.
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence 5555544444422 3344444444444
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.18 E-value=2.7e-11 Score=108.34 Aligned_cols=203 Identities=14% Similarity=-0.013 Sum_probs=129.4
Q ss_pred cccccceecCCCcccc-ccCccc--ccCcccceecccCcccccc-c----chhhhcCCCcceeeecccCCccccchhHhh
Q 036143 10 KLLALQCLDLEYTAIK-EVPEGM--EMLENLVHLTIYSKMLIKF-P----AGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 10 ~l~~L~~L~L~~~~~~-~lP~~i--~~L~~L~~L~l~~~~~~~l-P----~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
.+.+|++|++++|.+. ..|..+ +.+.+|++|++++|.+... | ..+ ..+++|++|+++++.. ...... .+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l-~~~~~~-~~ 165 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ-WLKPGLKVLSIAQAHS-PAFSCE-QV 165 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT-TBCSCCCEEEEECCSS-CCCCTT-SC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh-hhccCCCEEEeeCCCc-chhhHH-Hh
Confidence 3567999999999887 567777 8999999999999988753 2 233 6799999999998754 333334 78
Q ss_pred cccccccceEEEeccCcc---cc--ccccccccccccccccccceeEeecCCCccc-cce-ecccCCccEEEEeccCCcc
Q 036143 82 RSSDRLDTFVGYFSKLDD---FN--TYVKSSDGQRSKHFHFQVSTVYNGSAANTRF-YSF-LRTREANKSVCFYGCKICE 154 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~---~~--~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~-~~~-l~~~~~~~~~~L~~l~~~~ 154 (355)
+.+++|++|+++.+.... .. ..++.++.|+.|. +....+..... ... +.....++.++++++.+.+
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~-------Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA-------LRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB-------CCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE-------CCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence 899999999998776543 21 2235677788887 22222321111 001 1223456666776666554
Q ss_pred CCCccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCC
Q 036143 155 REGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCN 234 (355)
Q Consensus 155 ~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~ 234 (355)
..+.. +. ....+++|++|+++++ +++.+.. . + .++|+.|+++++.
T Consensus 239 ~~p~~-----------------------~~-------~~~~~~~L~~L~Ls~N-~l~~lp~-~-~--~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 239 TVNPS-----------------------AP-------RCMWSSALNSLNLSFA-GLEQVPK-G-L--PAKLRVLDLSSNR 283 (310)
T ss_dssp CCCSC-----------------------CS-------SCCCCTTCCCEECCSS-CCCSCCS-C-C--CSCCSCEECCSCC
T ss_pred cchhh-----------------------HH-------hccCcCcCCEEECCCC-CCCchhh-h-h--cCCCCEEECCCCc
Confidence 21110 00 0023468888898888 4554322 1 2 3788999998654
Q ss_pred CCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 235 RNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 235 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
+..++. ...+++|++|++++++-
T Consensus 284 -l~~~~~---------------~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 284 -LNRAPQ---------------PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp -CCSCCC---------------TTSCCCCSCEECSSTTT
T ss_pred -CCCCch---------------hhhCCCccEEECcCCCC
Confidence 334322 12678999999988753
No 107
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.17 E-value=5.4e-11 Score=98.81 Aligned_cols=109 Identities=10% Similarity=0.096 Sum_probs=78.8
Q ss_pred CCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
++.+| .+. .+|++|++++|.++.+|..++.+.+|++|++++|.+..++.+.|+.+++|++|+++++.. ...... .
T Consensus 22 l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l-~~i~~~-~ 97 (193)
T 2wfh_A 22 LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RCIPPR-T 97 (193)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTT-T
T ss_pred CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc-CEeCHH-H
Confidence 56677 553 578888888888888888888888888888888888888766558888888888887643 333333 6
Q ss_pred hcccccccceEEEeccCcccccc-ccccccccccc
Q 036143 81 ARSSDRLDTFVGYFSKLDDFNTY-VKSSDGQRSKH 114 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~ 114 (355)
++.+++|++|++..+.+...+.. +..+..|+.|.
T Consensus 98 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 77888888888877776655532 55555555555
No 108
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.16 E-value=4.3e-13 Score=130.66 Aligned_cols=266 Identities=12% Similarity=0.040 Sum_probs=127.7
Q ss_pred ccccccceecCCCc-cccccCcccccCcccceecccCcc-------------------------------cccccchhhh
Q 036143 9 AKLLALQCLDLEYT-AIKEVPEGMEMLENLVHLTIYSKM-------------------------------LIKFPAGILP 56 (355)
Q Consensus 9 ~~l~~L~~L~L~~~-~~~~lP~~i~~L~~L~~L~l~~~~-------------------------------~~~lP~~i~~ 56 (355)
..+++|++|++++| .+..+|..+.++++|++|+++++. ...+|.-+ .
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~-~ 286 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY-S 286 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGH-H
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHH-H
Confidence 34689999999988 666777777888888888755431 11233333 5
Q ss_pred cCCCcceeeecccCCccccchhHhhcccccccceEEEeccCcccccc-cccccccccccccccc-c-eeEeecCCCcccc
Q 036143 57 KLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFSKLDDFNTY-VKSSDGQRSKHFHFQV-S-TVYNGSAANTRFY 133 (355)
Q Consensus 57 ~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~~~~~~-~-~~~~~~~~~~~~~ 133 (355)
.+++|++|++++|. .....+...+..+++|++|.+..+........ ...++.|+.|...-.. . ......+++....
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 67788888888765 33333442466788888888875511111111 2234555555410000 0 0000001110000
Q ss_pred ceecccCCccEEEEeccCCccCCCccc-cCchhHHHH-Hh-----hcccccccccc---cccccccccccccCCCccEEe
Q 036143 134 SFLRTREANKSVCFYGCKICEREGVTI-VLPKDVQGL-IM-----RDIEDVTSLND---VFSKEQGLVNAAKFSHLKALW 203 (355)
Q Consensus 134 ~~l~~~~~~~~~~L~~l~~~~~~~~~~-~~~~~L~~L-l~-----~~~~~~~~l~~---~~~l~~~~~~~~~~~~L~~L~ 203 (355)
........++.+.+....+.......+ ..+++|+.| +. +| ..++..+. +..+ ...+++|++|+
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~~~l------~~~~~~L~~L~ 438 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP-DYLTLEPLDIGFGAI------VEHCKDLRRLS 438 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC-CTTTCCCTHHHHHHH------HHHCTTCCEEE
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc-ccccCCchhhHHHHH------HhhCCCccEEe
Confidence 000012223333333333322111100 012333333 33 22 22221100 0000 13566788888
Q ss_pred eccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCce
Q 036143 204 FSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAV 283 (355)
Q Consensus 204 l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~ 283 (355)
+++ .+++.........+++|+.|++++|......+. .-...+++|++|++++|+. .........
T Consensus 439 L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-------------~l~~~~~~L~~L~L~~n~~-~~~~~~~~~ 502 (594)
T 2p1m_B 439 LSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-------------HVLSGCDSLRKLEIRDCPF-GDKALLANA 502 (594)
T ss_dssp CCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-------------HHHHHCTTCCEEEEESCSC-CHHHHHHTG
T ss_pred ecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHH-------------HHHhcCCCcCEEECcCCCC-cHHHHHHHH
Confidence 765 444433222223377888888877653221111 0114578888888888865 221110011
Q ss_pred ecCCCceEEEEcCCCCc
Q 036143 284 LICNSLQEIQITPSCPK 300 (355)
Q Consensus 284 l~~~~L~~L~i~~~c~~ 300 (355)
..+++|++|++. +|+.
T Consensus 503 ~~l~~L~~L~l~-~~~~ 518 (594)
T 2p1m_B 503 SKLETMRSLWMS-SCSV 518 (594)
T ss_dssp GGGGGSSEEEEE-SSCC
T ss_pred HhCCCCCEEeee-CCCC
Confidence 225688888888 8865
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.13 E-value=3e-10 Score=95.34 Aligned_cols=109 Identities=20% Similarity=0.259 Sum_probs=87.0
Q ss_pred CCCCC-ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+ ..+|++|++++|.++.+|.. ++.+.+|++|++++|.+..+|...++.+++|++|+++++.. ......
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~- 94 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-QSLPNG- 94 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC-CccCHh-
Confidence 45667 54 46899999999999988765 68999999999999999999888669999999999998654 222222
Q ss_pred hhcccccccceEEEeccCcccccc-ccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNTY-VKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~ 114 (355)
.++.+++|++|++..+.+...... +..+..|+.|.
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence 578999999999988877766543 56777777777
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.13 E-value=8.5e-11 Score=100.36 Aligned_cols=110 Identities=16% Similarity=0.247 Sum_probs=90.8
Q ss_pred CCCC-C-ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERV-P-SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~l-P-~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+ | .+..+.+|++|++++|.+..+|.. +..+.+|++|++++|.+..+|.+.++.+++|++|+++++... .++
T Consensus 52 i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~---~lp 128 (229)
T 3e6j_A 52 ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT---ELP 128 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---SCC
T ss_pred cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc---ccC
Confidence 4555 4 789999999999999999999765 589999999999999999999887699999999999987652 444
Q ss_pred HhhcccccccceEEEeccCccccc-cccccccccccc
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKH 114 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 114 (355)
..++.+++|++|++..+.+..... .+..+..|+.|.
T Consensus 129 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 129 RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 488999999999998887776553 355666666655
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=7.3e-11 Score=114.12 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=61.6
Q ss_pred ccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEE
Q 036143 13 ALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVG 92 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l 92 (355)
.|++|++++|.++.+|. ++.+.+|++|++++|.+..+|..+ +++++|++|+++++.. ..++ .++.+++|++|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l---~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNAL---ENVD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGG-GGCTTCCEEECCSSCC---CCCG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhh-hcCCCCCEEECCCCCC---CCCc-ccCCCCCCcEEEC
Confidence 36667777766666665 666667777777776666666666 6677777777766543 2245 6666667777766
Q ss_pred EeccCccc--cccccccccccccc
Q 036143 93 YFSKLDDF--NTYVKSSDGQRSKH 114 (355)
Q Consensus 93 ~~~~~~~~--~~~~~~l~~L~~L~ 114 (355)
+.+.+... +..++.++.|+.|.
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEE
Confidence 66666555 45566666666655
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.12 E-value=9.2e-11 Score=102.34 Aligned_cols=151 Identities=16% Similarity=0.180 Sum_probs=106.1
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.++.+..+.+|++|++++|.++.+| .++.+.+|++|++++|.+..+|. + +++++|++|+++++.. ..++ .+
T Consensus 31 i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l-~~l~~L~~L~L~~N~l---~~l~-~~ 103 (263)
T 1xeu_A 31 VTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-L-KDLTKLEELSVNRNRL---KNLN-GI 103 (263)
T ss_dssp TTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCSSCCEEECCSSCC---SCCT-TC
T ss_pred cccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-h-ccCCCCCEEECCCCcc---CCcC-cc
Confidence 445566788999999999999999888 78899999999999999999887 5 9999999999998755 3344 44
Q ss_pred cccccccceEEEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCcccc
Q 036143 82 RSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIV 161 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~ 161 (355)
.. ++|++|++..+..... ..++.++.|+.|.. ....+.+. ..+.....++.+.++++.+.+... +.
T Consensus 104 ~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~L-------s~N~i~~~---~~l~~l~~L~~L~L~~N~i~~~~~--l~ 169 (263)
T 1xeu_A 104 PS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSI-------RNNKLKSI---VMLGFLSKLEVLDLHGNEITNTGG--LT 169 (263)
T ss_dssp CC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEEC-------TTSCCCBC---GGGGGCTTCCEEECTTSCCCBCTT--ST
T ss_pred cc-CcccEEEccCCccCCC-hhhcCcccccEEEC-------CCCcCCCC---hHHccCCCCCEEECCCCcCcchHH--hc
Confidence 44 8899999987777654 34667777777762 22222222 233345567777787777766522 23
Q ss_pred CchhHHHH-Hhhc
Q 036143 162 LPKDVQGL-IMRD 173 (355)
Q Consensus 162 ~~~~L~~L-l~~~ 173 (355)
.++.|+.| +.++
T Consensus 170 ~l~~L~~L~l~~N 182 (263)
T 1xeu_A 170 RLKKVNWIDLTGQ 182 (263)
T ss_dssp TCCCCCEEEEEEE
T ss_pred cCCCCCEEeCCCC
Confidence 44455555 5554
No 113
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=1e-10 Score=95.46 Aligned_cols=96 Identities=27% Similarity=0.256 Sum_probs=69.2
Q ss_pred CCCCC-ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+. .+|++|++++|.++.+ |..++.+.+|++|++++|.+..+|.++|+++++|++|+++++.. ......
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l-~~l~~~- 99 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL-KSIPRG- 99 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc-ceeCHH-
Confidence 56777 554 7888888888888766 55678888888888888888888877667888888888887543 222222
Q ss_pred hhcccccccceEEEeccCcccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFN 101 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~ 101 (355)
.++.+++|++|++..+......
T Consensus 100 ~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 100 AFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp TTTTCTTCSEEECCSSCBCTTB
T ss_pred HhccccCCCEEEeCCCCccccc
Confidence 4777888888888766655443
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.11 E-value=8.5e-11 Score=99.72 Aligned_cols=140 Identities=9% Similarity=0.100 Sum_probs=97.1
Q ss_pred CCCCC-ccccccccceecCCCccccccCc--ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPE--GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~--~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+| .+. ..+++|++++|.++.++. .++.+.+|++|++++|.+..++.+.|+++++|++|+++++.. ......
T Consensus 23 l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~ 99 (220)
T 2v70_A 23 LNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL-ENVQHK 99 (220)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CCCCGG
T ss_pred cccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc-CccCHh
Confidence 56788 553 456899999999987743 378999999999999999988875459999999999998654 333333
Q ss_pred HhhcccccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCc
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKIC 153 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~ 153 (355)
.++.+++|++|++..+.+.... ..+..+..|+.|.. ..+.+.+. .+..+.....++.+.+.++.+.
T Consensus 100 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L-------~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 100 -MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL-------YDNQITTV-APGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp -GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC-------TTSCCCCB-CTTTTTTCTTCCEEECCSCCEE
T ss_pred -HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC-------CCCcCCEE-CHHHhcCCCCCCEEEecCcCCc
Confidence 6888999999999888777653 45777777777772 22222221 1222333445566666666554
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.11 E-value=1.9e-10 Score=97.52 Aligned_cols=92 Identities=24% Similarity=0.350 Sum_probs=46.4
Q ss_pred ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
.+..+++|++|+|++|.++.+ |..+..+.+|++|++++|.+..+|.++|+.+++|++|+++++.. ...... .+..++
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l-~~~~~~-~~~~l~ 128 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI-NCLRVD-AFQDLH 128 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-TTTTCT
T ss_pred HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCC-CEeCHH-HcCCCC
Confidence 445555555555555555544 44455555555555555555555555445555555555555332 222222 455555
Q ss_pred cccceEEEeccCccc
Q 036143 86 RLDTFVGYFSKLDDF 100 (355)
Q Consensus 86 ~L~~L~l~~~~~~~~ 100 (355)
+|++|++..+.+...
T Consensus 129 ~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 129 NLNLLSLYDNKLQTI 143 (220)
T ss_dssp TCCEEECCSSCCSCC
T ss_pred CCCEEECCCCcCCEE
Confidence 555555554444433
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.11 E-value=2.8e-10 Score=109.78 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=66.2
Q ss_pred cccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceE
Q 036143 12 LALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFV 91 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~ 91 (355)
.+|++|++++|+++.+|..+. .+|++|++++|.+..+| +.+++|++|++++|.. ..++ .++. +|++|+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l---~~ip-~l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP----ELPASLEYLDACDNRL---STLP-ELPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCC---SCCC-CCCT--TCCEEE
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc----cccCCCCEEEccCCCC---CCcc-hhhc--CCCEEE
Confidence 389999999999999998774 78999999999999998 3478999999998754 2255 3444 899999
Q ss_pred EEeccCccccccccccccccccc
Q 036143 92 GYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 92 l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
+..+.+..++. .++.|+.|.
T Consensus 127 Ls~N~l~~lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 127 VDNNQLTMLPE---LPALLEYIN 146 (571)
T ss_dssp CCSSCCSCCCC---CCTTCCEEE
T ss_pred CCCCcCCCCCC---cCccccEEe
Confidence 88777665443 344455554
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.10 E-value=1.7e-10 Score=96.88 Aligned_cols=111 Identities=21% Similarity=0.265 Sum_probs=89.0
Q ss_pred CCCCC--ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+| .+..+++|++|++++|.++.+|.. ++.+.+|++|++++|.+..+|...++++++|++|+++++.. ......
T Consensus 40 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~ 118 (208)
T 2o6s_A 40 LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL-QSLPDG 118 (208)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT
T ss_pred cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcC-cccCHh
Confidence 56677 478999999999999999988766 58999999999999999999988669999999999998654 333222
Q ss_pred HhhcccccccceEEEeccCcccccc-ccccccccccc
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNTY-VKSSDGQRSKH 114 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~ 114 (355)
.++.+++|++|++..+........ +..+..|+.|.
T Consensus 119 -~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 119 -VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp -TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred -HhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence 578999999999988777665533 55566666555
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.10 E-value=2.8e-10 Score=103.99 Aligned_cols=38 Identities=26% Similarity=0.134 Sum_probs=23.9
Q ss_pred cCCCccEEeeccCCCccccchHHHHhhcCC--CCeEEEecCC
Q 036143 195 KFSHLKALWFSYCPNLQKLFSLQLLAALQN--LEFLVVQSCN 234 (355)
Q Consensus 195 ~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~--L~~L~l~~~~ 234 (355)
.+++|+.|+++++ +++.+.+ ..+..+++ |+.|++.+++
T Consensus 161 ~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 161 KLPKLMLLDLSSN-KLKKLPL-TDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp -CTTCCEEECCSS-CCCCCCH-HHHHHSCHHHHTTEECCSSC
T ss_pred cCCcCCEEECCCC-CCCccCH-HHhhhccHhhcceEEecCCC
Confidence 4677888888887 5665443 33566665 3777777543
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=6.7e-12 Score=104.72 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=72.2
Q ss_pred CCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
++++| .++.+.+|++|++++|.++.+| .++.+.+|++|++++|.+..+|..+ +.+++|++|++++|.. ..++ .
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~L~~N~l---~~l~-~ 110 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQI---ASLS-G 110 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHH-HHHHHCSEEEEEEEEC---CCHH-H
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchh-hcCCcCCEEECcCCcC---CcCC-c
Confidence 45566 6777777777777777777777 7777777777777777777777765 7777777777777644 3345 6
Q ss_pred hcccccccceEEEeccCccccc--cccccccccccc
Q 036143 81 ARSSDRLDTFVGYFSKLDDFNT--YVKSSDGQRSKH 114 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~ 114 (355)
++.+++|++|++..+.+..... .+..++.|+.|.
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 7777777777777666554332 344444444444
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.08 E-value=7.6e-11 Score=117.42 Aligned_cols=105 Identities=19% Similarity=0.125 Sum_probs=82.8
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
.+..+.+|++|+|++|.+..+|..++.+.+|++|+|++|.+..+|..+ ++|++|++|++++|... .++..++.|++
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~---~lp~~~~~l~~ 294 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLT---SLPAELGSCFQ 294 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCS---SCCSSGGGGTT
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhh-hCCCCCCEEeCcCCcCC---ccChhhcCCCC
Confidence 677888888888888888888888888888888888888888888887 88888888888886542 33447888888
Q ss_pred ccceEEEeccCcccccccccccccccccc
Q 036143 87 LDTFVGYFSKLDDFNTYVKSSDGQRSKHF 115 (355)
Q Consensus 87 L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 115 (355)
|++|++..+.+..++..++.+..|+.|.+
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSCTTCCCEEC
T ss_pred CCEEECCCCCCCccChhhhcCCCccEEeC
Confidence 88888887777777766778888877774
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.08 E-value=1.7e-10 Score=95.66 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=37.1
Q ss_pred ccceecCCCccccccCcc--cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccce
Q 036143 13 ALQCLDLEYTAIKEVPEG--MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTF 90 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP~~--i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 90 (355)
+|++|++++|.++.+|.. ++.+.+|++|++++|.+..++.+.|+++++|++|+++++.. ...... .++.+++|++|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~-~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-KEISNK-MFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC-CEECSS-SSTTCTTCCEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC-CccCHH-HhcCCCCCCEE
Confidence 455555555555444432 44555555555555544444222125555555555554322 111111 34444555555
Q ss_pred EEEeccCc
Q 036143 91 VGYFSKLD 98 (355)
Q Consensus 91 ~l~~~~~~ 98 (355)
++..+.+.
T Consensus 108 ~L~~N~l~ 115 (192)
T 1w8a_A 108 NLYDNQIS 115 (192)
T ss_dssp ECCSSCCC
T ss_pred ECCCCcCC
Confidence 55444443
No 122
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.08 E-value=1.7e-10 Score=93.76 Aligned_cols=94 Identities=26% Similarity=0.253 Sum_probs=60.1
Q ss_pred CCCCC-ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+ .++|++|+|++|.++.+ |..++.+.+|++|++++|.+..+|.++|+++++|++|+++++.. ......
T Consensus 21 l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l-~~~~~~- 96 (170)
T 3g39_A 21 LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-KSIPRG- 96 (170)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-
T ss_pred cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc-CEeCHH-
Confidence 45666 45 36777777777777766 44567777777777777777777766556777777777776543 222222
Q ss_pred hhcccccccceEEEeccCcc
Q 036143 80 AARSSDRLDTFVGYFSKLDD 99 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~ 99 (355)
.+..+++|++|++..+....
T Consensus 97 ~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 97 AFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TTTTCTTCCEEECCSSCBCT
T ss_pred HhcCCCCCCEEEeCCCCCCC
Confidence 46677777777776655543
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.07 E-value=3.1e-10 Score=96.19 Aligned_cols=154 Identities=10% Similarity=0.131 Sum_probs=86.6
Q ss_pred CccccccccceecCCCccccccCcccccCcccceecccCccccccc-chhhhcCCCcceeeecccCCccccchhHhhccc
Q 036143 6 PSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFP-AGILPKLCNLYSLRLNWGSETSRETVQEAARSS 84 (355)
Q Consensus 6 P~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP-~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L 84 (355)
|+.|.+. -++++++++.++.+|..+.. .+++|++++|.+..++ .+.|+++++|++|+++++.. ...... .++.+
T Consensus 6 P~~C~C~-~~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i-~~i~~~-~~~~l 80 (220)
T 2v70_A 6 PEKCRCE-GTTVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEG-AFEGA 80 (220)
T ss_dssp CTTCEEE-TTEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC-CEECTT-TTTTC
T ss_pred CCCCEEC-CCEeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC-CEECHH-HhCCC
Confidence 3344443 35777777777777776643 4577777777777763 34347777777777776543 222222 57777
Q ss_pred ccccceEEEeccCccccc-cccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCc
Q 036143 85 DRLDTFVGYFSKLDDFNT-YVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLP 163 (355)
Q Consensus 85 ~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~ 163 (355)
++|++|++..+.+..... .+..+..|+.|... ...+.+. .+..+.....++.+.++++.+.+..+..+..+
T Consensus 81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-------~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 152 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLR-------SNRITCV-GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152 (220)
T ss_dssp TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT-------TSCCCCB-CTTSSTTCTTCSEEECTTSCCCCBCTTTTTTC
T ss_pred CCCCEEECCCCccCccCHhHhcCCcCCCEEECC-------CCcCCeE-CHhHcCCCccCCEEECCCCcCCEECHHHhcCC
Confidence 777777777666665543 35666666666621 1122211 11222333456666666666655433333344
Q ss_pred hhHHHH-Hhh
Q 036143 164 KDVQGL-IMR 172 (355)
Q Consensus 164 ~~L~~L-l~~ 172 (355)
++|+.| +.+
T Consensus 153 ~~L~~L~L~~ 162 (220)
T 2v70_A 153 HSLSTLNLLA 162 (220)
T ss_dssp TTCCEEECCS
T ss_pred CCCCEEEecC
Confidence 445444 444
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.03 E-value=2.3e-10 Score=92.57 Aligned_cols=108 Identities=17% Similarity=0.174 Sum_probs=89.2
Q ss_pred CCC-ccccccccceecCCCccccccCcccccCcccceecccCccccc-ccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 4 RVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIK-FPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 4 ~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~-lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
.+| .+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+ +++++|++|++++|.......+. .+
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~-~l 116 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLA-EKLPNLTHLNLSGNKLKDISTLE-PL 116 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHH-HHCTTCCEEECBSSSCCSSGGGG-GG
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHH-hhCCCCCEEeccCCccCcchhHH-HH
Confidence 788 779999999999999999988 789999999999999999988 55555 88999999999997653222334 89
Q ss_pred cccccccceEEEeccCccccc----cccccccccccc
Q 036143 82 RSSDRLDTFVGYFSKLDDFNT----YVKSSDGQRSKH 114 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~ 114 (355)
+.+++|++|++..+.....+. .+..++.|+.|.
T Consensus 117 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 117 KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence 999999999998887766654 566777777776
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.02 E-value=9.9e-10 Score=105.92 Aligned_cols=95 Identities=17% Similarity=0.236 Sum_probs=75.8
Q ss_pred CCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
|+.+| .+. .+|++|++++|.++.+| +.+.+|++|++++|.+..+|. + ++ +|++|++++|.. ..++ .
T Consensus 71 L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l-~~--~L~~L~Ls~N~l---~~lp-~ 137 (571)
T 3cvr_A 71 LSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-L-PA--SLKHLDVDNNQL---TMLP-E 137 (571)
T ss_dssp CSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-C-CT--TCCEEECCSSCC---SCCC-C
T ss_pred CCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-h-hc--CCCEEECCCCcC---CCCC-C
Confidence 56788 664 89999999999999999 568999999999999999998 6 66 999999998754 3355 4
Q ss_pred hcccccccceEEEeccCccccccccccccccccc
Q 036143 81 ARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
.+++|++|++..+.+..++. .++.|+.|.
T Consensus 138 --~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~ 166 (571)
T 3cvr_A 138 --LPALLEYINADNNQLTMLPE---LPTSLEVLS 166 (571)
T ss_dssp --CCTTCCEEECCSSCCSCCCC---CCTTCCEEE
T ss_pred --cCccccEEeCCCCccCcCCC---cCCCcCEEE
Confidence 78999999998877765443 334455555
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.00 E-value=8.5e-10 Score=90.07 Aligned_cols=109 Identities=18% Similarity=0.245 Sum_probs=69.2
Q ss_pred CCCCC-ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+ ..+|++|++++|.++.+|.. ++.+.+|++|++++|.+..+|...++.+++|++|+++++.. ......
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~- 94 (177)
T 2o6r_A 19 LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-QSLPNG- 94 (177)
T ss_dssp CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-
T ss_pred CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc-cccCHH-
Confidence 45566 33 35777777777777766554 47777778888877777777766557777777777777543 222222
Q ss_pred hhcccccccceEEEeccCcccccc-ccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNTY-VKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~ 114 (355)
.++.+++|++|++..+.+...+.. +..++.|+.|.
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 95 VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 466777777777766665554433 34444444444
No 127
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.00 E-value=5.8e-11 Score=108.58 Aligned_cols=90 Identities=14% Similarity=0.219 Sum_probs=66.0
Q ss_pred ccccc-ccceecCCCcccccc-CcccccC-----cccceecccCcccccccch-h---hhcC-CCcceeeecccCCcccc
Q 036143 8 LAKLL-ALQCLDLEYTAIKEV-PEGMEML-----ENLVHLTIYSKMLIKFPAG-I---LPKL-CNLYSLRLNWGSETSRE 75 (355)
Q Consensus 8 i~~l~-~L~~L~L~~~~~~~l-P~~i~~L-----~~L~~L~l~~~~~~~lP~~-i---~~~L-~~L~~L~l~~~~~~~~~ 75 (355)
+..+. +|++|++++|.+... +..+..+ .+|++|++++|.+...+.. + +..+ ++|++|++++|.. ...
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~ 124 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSK 124 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGS
T ss_pred HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC-CcH
Confidence 34566 899999999998855 5566665 9999999999998876554 2 2445 8999999998754 333
Q ss_pred chh---Hhhcc-cccccceEEEeccCc
Q 036143 76 TVQ---EAARS-SDRLDTFVGYFSKLD 98 (355)
Q Consensus 76 ~~~---~~l~~-L~~L~~L~l~~~~~~ 98 (355)
... ..+.. .++|++|++..+...
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 333 12444 369999999877665
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.00 E-value=5.7e-10 Score=92.57 Aligned_cols=97 Identities=20% Similarity=0.158 Sum_probs=81.4
Q ss_pred CCCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
+++.+| .+..+.+|++|++++|.++.++. .+..+.+|++|++++|.+..+|...|+.+++|++|+++++.. ......
T Consensus 42 ~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~ 120 (193)
T 2wfh_A 42 QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEG 120 (193)
T ss_dssp CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCC-CBCCTT
T ss_pred cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCC-CeeChh
Confidence 367889 99999999999999999998864 589999999999999999999887559999999999998654 222222
Q ss_pred HhhcccccccceEEEeccCcc
Q 036143 79 EAARSSDRLDTFVGYFSKLDD 99 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~ 99 (355)
.+..+++|++|++..+....
T Consensus 121 -~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 121 -AFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp -TTTTCTTCCEEECCSSCEEC
T ss_pred -hhhcCccccEEEeCCCCeec
Confidence 58889999999997666543
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.00 E-value=2.6e-10 Score=113.54 Aligned_cols=95 Identities=18% Similarity=0.114 Sum_probs=85.0
Q ss_pred CCCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++..+| .+.++++|++|+|++|.++.+|..+++|.+|++|+|++|.+..+|.++ ++|++|++|++++|.. ..++.
T Consensus 235 ~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~L~~N~l---~~lp~ 310 (727)
T 4b8c_D 235 QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL-GSCFQLKYFYFFDNMV---TTLPW 310 (727)
T ss_dssp CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG-GGGTTCSEEECCSSCC---CCCCS
T ss_pred CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh-cCCCCCCEEECCCCCC---CccCh
Confidence 356789 889999999999999999999999999999999999999999999998 9999999999998754 24444
Q ss_pred hhcccccccceEEEeccCcc
Q 036143 80 AARSSDRLDTFVGYFSKLDD 99 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~ 99 (355)
.++.|++|++|++..|.+..
T Consensus 311 ~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 311 EFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp STTSCTTCCCEECTTSCCCS
T ss_pred hhhcCCCccEEeCCCCccCC
Confidence 79999999999998887765
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.98 E-value=4.6e-10 Score=93.06 Aligned_cols=96 Identities=16% Similarity=0.170 Sum_probs=80.5
Q ss_pred CCCCC-c--cccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccch
Q 036143 2 LERVP-S--LAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETV 77 (355)
Q Consensus 2 l~~lP-~--i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~ 77 (355)
++.+| . ++.+++|++|++++|.++.+ |..++.+.+|++|++++|.+..+|...|+.+++|++|+++++.. .....
T Consensus 41 i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~ 119 (192)
T 1w8a_A 41 LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI-SCVMP 119 (192)
T ss_dssp CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC-CEECT
T ss_pred CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC-CeeCH
Confidence 45666 3 88999999999999999977 77899999999999999999999887559999999999998654 33333
Q ss_pred hHhhcccccccceEEEeccCcc
Q 036143 78 QEAARSSDRLDTFVGYFSKLDD 99 (355)
Q Consensus 78 ~~~l~~L~~L~~L~l~~~~~~~ 99 (355)
. .++.+++|++|++..+....
T Consensus 120 ~-~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 120 G-SFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp T-SSTTCTTCCEEECTTCCBCC
T ss_pred H-HhhcCCCCCEEEeCCCCccC
Confidence 4 78899999999997666543
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.96 E-value=6.6e-10 Score=101.52 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=81.5
Q ss_pred CCCCC-ccccccccceecCCCccccccCcc-cc-cCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEG-ME-MLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~-i~-~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
|+.+| .+. ..+++|+|++|.++.+|.. +. .+.+|++|++++|.+..+|.+.|+++++|++|+++++.. ......
T Consensus 30 l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~ 106 (361)
T 2xot_A 30 LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL-HTLDEF 106 (361)
T ss_dssp CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTT
T ss_pred cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC-CcCCHH
Confidence 66777 554 4688899999988887665 44 888999999999988888866458889999999988653 222222
Q ss_pred HhhcccccccceEEEeccCcccc-ccccccccccccc
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKH 114 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~ 114 (355)
.+..+++|++|++..+.+.... ..+..+..|+.|.
T Consensus 107 -~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 107 -LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp -TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred -HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 5788889999988877776653 4467777777776
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.94 E-value=9.3e-10 Score=87.10 Aligned_cols=108 Identities=13% Similarity=0.112 Sum_probs=87.5
Q ss_pred CCC-ccccccccceecCCCccccccCcccccCcccceecccCccccc-ccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 4 RVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIK-FPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 4 ~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~-lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
.+| .++.+++|++|++++|.++.+ ..++.+.+|++|++++|.+.. +|..+ +++++|++|++++|.. .....+..+
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~ls~N~i-~~~~~~~~~ 109 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNLTHLNLSGNKI-KDLSTIEPL 109 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTCCEEECTTSCC-CSHHHHGGG
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCCCEEECCCCcC-CChHHHHHH
Confidence 688 789999999999999999888 788999999999999999988 66666 8899999999998764 222222389
Q ss_pred cccccccceEEEeccCccccc----cccccccccccc
Q 036143 82 RSSDRLDTFVGYFSKLDDFNT----YVKSSDGQRSKH 114 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~ 114 (355)
+.+++|++|++..+.....+. .++.++.|+.|+
T Consensus 110 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 110 KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence 999999999998777765543 456666666665
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.92 E-value=2e-09 Score=87.80 Aligned_cols=96 Identities=24% Similarity=0.299 Sum_probs=80.2
Q ss_pred CCCCC--ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+| .++.+++|++|++++|.++.+|.. ++.+.+|++|++++|.+..+|...++++++|++|+++++.. ......
T Consensus 40 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~ 118 (177)
T 2o6r_A 40 LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDG 118 (177)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTT
T ss_pred ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc-eEeCHH
Confidence 56677 478999999999999999988766 58999999999999999999988669999999999998754 333222
Q ss_pred HhhcccccccceEEEeccCcc
Q 036143 79 EAARSSDRLDTFVGYFSKLDD 99 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~ 99 (355)
.+..+++|++|++..+....
T Consensus 119 -~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 119 -IFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp -TTTTCTTCCEEECCSSCBCC
T ss_pred -HhcCCcccCEEEecCCCeec
Confidence 46889999999998776654
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.92 E-value=2.9e-11 Score=100.86 Aligned_cols=95 Identities=23% Similarity=0.274 Sum_probs=80.6
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.+|.++.+++|++|++++|.++.+|..++.+++|++|++++|.+..+| .+ +++++|++|+++++.......++ .+
T Consensus 60 l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~-~~l~~L~~L~l~~N~i~~~~~~~-~l 136 (198)
T 1ds9_A 60 IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI-EKLVNLRVLYMSNNKITNWGEID-KL 136 (198)
T ss_dssp ESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH-HHHHHSSEEEESEEECCCHHHHH-HH
T ss_pred CccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc-ccCCCCCEEECCCCcCCchhHHH-HH
Confidence 45677888999999999999999999998899999999999999999988 56 99999999999987552222224 78
Q ss_pred cccccccceEEEeccCcc
Q 036143 82 RSSDRLDTFVGYFSKLDD 99 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~ 99 (355)
..+++|++|++..+...+
T Consensus 137 ~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 137 AALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp TTTTTCSEEEECSCHHHH
T ss_pred hcCCCCCEEEecCCcccc
Confidence 999999999998776544
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.91 E-value=1.5e-09 Score=104.86 Aligned_cols=94 Identities=23% Similarity=0.221 Sum_probs=53.3
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccc-hhHh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRET-VQEA 80 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~-~~~~ 80 (355)
|+.+|.++.+++|++|+|++|.++.+|..++.+++|++|++++|.+..+| ++ +++++|++|++++|.. .... +. .
T Consensus 453 l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l-~~l~~L~~L~Ls~N~l-~~~~~p~-~ 528 (567)
T 1dce_A 453 LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GV-ANLPRLQELLLCNNRL-QQSAAIQ-P 528 (567)
T ss_dssp CSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GG-TTCSSCCEEECCSSCC-CSSSTTG-G
T ss_pred CCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-cc-CCCCCCcEEECCCCCC-CCCCCcH-H
Confidence 44555556666666666666666666666666666666666666666655 44 6666666666665432 2221 22 5
Q ss_pred hcccccccceEEEeccCcc
Q 036143 81 ARSSDRLDTFVGYFSKLDD 99 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~ 99 (355)
++.+++|++|++..+....
T Consensus 529 l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 529 LVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp GGGCTTCCEEECTTSGGGG
T ss_pred HhcCCCCCEEEecCCcCCC
Confidence 6666666666665554443
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.85 E-value=1.5e-09 Score=88.51 Aligned_cols=111 Identities=16% Similarity=0.227 Sum_probs=84.6
Q ss_pred CCCCCcccccc-ccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 2 LERVPSLAKLL-ALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 2 l~~lP~i~~l~-~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
++.+|.+..+. +|++|++++|.++.+ ..++.+++|++|++++|.+..+|.++++.+++|++|+++++.......+. .
T Consensus 31 l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-~ 108 (176)
T 1a9n_A 31 IPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLD-P 108 (176)
T ss_dssp CCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGG-G
T ss_pred CchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhH-h
Confidence 55677666666 999999999988887 57889999999999999999888776689999999999987552212223 6
Q ss_pred hcccccccceEEEeccCcccccc----ccccccccccc
Q 036143 81 ARSSDRLDTFVGYFSKLDDFNTY----VKSSDGQRSKH 114 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~~~~~----~~~l~~L~~L~ 114 (355)
++.+++|++|++..+.....+.. +..++.|+.|+
T Consensus 109 l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 109 LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred hhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeC
Confidence 88889999999987776555443 55666666665
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=6.6e-08 Score=86.95 Aligned_cols=100 Identities=18% Similarity=0.133 Sum_probs=66.3
Q ss_pred CCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccc-eeeccccccc
Q 036143 196 FSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLK-KLWLSFLPEL 274 (355)
Q Consensus 196 ~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l 274 (355)
+++|+.+++.++ +++.+.. ..+.++++|+.+.+.+. +..+.. ..+..+++|+ .+.+.+ .+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~-~aF~~~~~L~~l~l~~n--i~~I~~-------------~aF~~~~~L~~~l~l~~--~l 285 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPD-FTFAQKKYLLKIKLPHN--LKTIGQ-------------RVFSNCGRLAGTLELPA--SV 285 (329)
T ss_dssp CTTCCEEECTTB-CCCEECT-TTTTTCTTCCEEECCTT--CCEECT-------------TTTTTCTTCCEEEEECT--TC
T ss_pred cCCCeEEECCCC-CcceecH-hhhhCCCCCCEEECCcc--cceehH-------------HHhhCChhccEEEEEcc--cc
Confidence 678888888876 4555433 33677888888888753 555542 1556777888 888866 57
Q ss_pred ceecCCCceec-CCCceEEEEcCCCCccccccCCC-CCCCCCCCCCCCCeeEEE
Q 036143 275 KSVCSDNAVLI-CNSLQEIQITPSCPKLKRLSLRL-PPLDNGQPSPSPALEVIK 326 (355)
Q Consensus 275 ~~i~~~~~~l~-~~~L~~L~i~~~c~~L~~lp~~~-~~l~~~~~~~~~~L~~l~ 326 (355)
+.|.. +++. +++|+.+.+. -.+++.++.+. ..++ +|+.|+
T Consensus 286 ~~I~~--~aF~~c~~L~~l~l~--~n~i~~I~~~aF~~~~--------~L~~ly 327 (329)
T 3sb4_A 286 TAIEF--GAFMGCDNLRYVLAT--GDKITTLGDELFGNGV--------PSKLIY 327 (329)
T ss_dssp CEECT--TTTTTCTTEEEEEEC--SSCCCEECTTTTCTTC--------CCCEEE
T ss_pred eEEch--hhhhCCccCCEEEeC--CCccCccchhhhcCCc--------chhhhc
Confidence 77766 5554 6788888883 35777776533 4433 777765
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.82 E-value=5.8e-09 Score=84.56 Aligned_cols=98 Identities=14% Similarity=0.161 Sum_probs=79.6
Q ss_pred ccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEE
Q 036143 13 ALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVG 92 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l 92 (355)
..++++++++.++.+|..+. .+|++|++++|.+..++.+.|+++++|++|+++++.. ...... .+..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~-~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAG-VFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTT-TTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc-CccChh-hccCCCCCCEEEC
Confidence 56899999999999998875 8999999999999999666459999999999998754 333322 5789999999999
Q ss_pred EeccCcccccc-ccccccccccc
Q 036143 93 YFSKLDDFNTY-VKSSDGQRSKH 114 (355)
Q Consensus 93 ~~~~~~~~~~~-~~~l~~L~~L~ 114 (355)
..+.+...... +..+..|+.|.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCccCEeCHHHhcCCCCCCEEE
Confidence 98888776643 66777777666
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.80 E-value=5.5e-09 Score=94.72 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=69.6
Q ss_pred CCCCCccccccccceecCCC-ccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVPSLAKLLALQCLDLEY-TAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~-~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
|+.+|.+..+++|++|+|++ |.++.+| ..++.|.+|++|+|++|.+..+|...|++|++|++|+++++.. ......
T Consensus 21 l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~- 98 (347)
T 2ifg_A 21 LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL-ESLSWK- 98 (347)
T ss_dssp CTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC-SCCCST-
T ss_pred CCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc-ceeCHH-
Confidence 66788888888888888886 8888776 4578888888888888888888776568888888888887644 222222
Q ss_pred hhcccccccceEEEeccCcc
Q 036143 80 AARSSDRLDTFVGYFSKLDD 99 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~ 99 (355)
.+..+. |++|++..+....
T Consensus 99 ~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 99 TVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp TTCSCC-CCEEECCSSCCCC
T ss_pred HcccCC-ceEEEeeCCCccC
Confidence 333444 8888887666543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.79 E-value=9e-09 Score=83.75 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=81.2
Q ss_pred CccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 6 PSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 6 P~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
|+-|.+ .-+.++++++.++.+|..+. .+|++|++++|.+..++.+.|+++++|++|+++++.. ...... .++.++
T Consensus 7 P~~C~C-~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~-~~~~l~ 81 (174)
T 2r9u_A 7 PSQCSC-DQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTG-VFDKLT 81 (174)
T ss_dssp CTTSEE-CSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-TTTTCT
T ss_pred CCCCEE-CCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC-CccChh-HhCCcc
Confidence 333444 34889999999999999886 8999999999999999665559999999999998754 222222 468999
Q ss_pred cccceEEEeccCcccccc-ccccccccccc
Q 036143 86 RLDTFVGYFSKLDDFNTY-VKSSDGQRSKH 114 (355)
Q Consensus 86 ~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~ 114 (355)
+|++|++..+.+...+.. +..++.|+.|.
T Consensus 82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred hhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 999999998888776644 66667776666
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.52 E-value=1.4e-07 Score=85.36 Aligned_cols=104 Identities=17% Similarity=0.098 Sum_probs=80.3
Q ss_pred Cccc-cccccceecCCCc-cccccCcccccCcccceecccC-cccccccchhhhcCCCcceeeecccCCccccchhHhhc
Q 036143 6 PSLA-KLLALQCLDLEYT-AIKEVPEGMEMLENLVHLTIYS-KMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAAR 82 (355)
Q Consensus 6 P~i~-~l~~L~~L~L~~~-~~~~lP~~i~~L~~L~~L~l~~-~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~ 82 (355)
|+.| .+.. ..++.+++ +++.+|. ++.+.+|++|+|++ |.+..+|.+.|+.|++|++|+++++.. .+.... .++
T Consensus 2 p~~c~~C~~-~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~-~~~ 77 (347)
T 2ifg_A 2 PDACCPHGS-SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPD-AFH 77 (347)
T ss_dssp CSSSCCSSS-SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCC-CEECTT-GGG
T ss_pred CCcCccccC-CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcc-ceeCHH-Hhc
Confidence 3344 4544 45688888 8999999 99999999999997 999999976559999999999998653 444333 789
Q ss_pred ccccccceEEEeccCccccccc-cccccccccc
Q 036143 83 SSDRLDTFVGYFSKLDDFNTYV-KSSDGQRSKH 114 (355)
Q Consensus 83 ~L~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~ 114 (355)
.|++|++|+++.+.+...+... ..+. |+.|.
T Consensus 78 ~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 78 FTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 9999999999988887766443 3333 66555
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.35 E-value=3.7e-06 Score=77.58 Aligned_cols=251 Identities=10% Similarity=0.067 Sum_probs=133.5
Q ss_pred CCCC--ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 3 ERVP--SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 3 ~~lP--~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
+.|+ .|.++ +|+.+.+..+ ++.++.. +.+ .+|+.+.+.. .+..++...|..+++|+.+++..+.. ..++.
T Consensus 125 ~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l---~~I~~ 197 (401)
T 4fdw_A 125 KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI---TKLPA 197 (401)
T ss_dssp CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC---SEECT
T ss_pred CEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc---eEech
Confidence 3444 45554 6777777654 6666444 344 3677777775 56667666667778888887765332 11111
Q ss_pred hhcccccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGV 158 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~ 158 (355)
......+|+.+.+. ++..... ..+..+..|+.+..+-++..+......+ ..+....+
T Consensus 198 ~aF~~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~----------~~L~~i~l----------- 255 (401)
T 4fdw_A 198 STFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE----------SGITTVKL----------- 255 (401)
T ss_dssp TTTTTCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT----------CCCSEEEE-----------
T ss_pred hhEeecccCEEEeC-CchheehhhHhhCCCCCCEEecCCCccCcccccccc----------CCccEEEe-----------
Confidence 22224677777664 2232222 2244555555555222211111000000 01111111
Q ss_pred cccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCc----cccchHHHHhhcCCCCeEEEecCC
Q 036143 159 TIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNL----QKLFSLQLLAALQNLEFLVVQSCN 234 (355)
Q Consensus 159 ~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l----~~~~~~~~l~~L~~L~~L~l~~~~ 234 (355)
+ ..++.+... ....+++|+.+.+.+.... +.+ ....+.++++|+.+.+. .
T Consensus 256 ----p-----------~~i~~I~~~--------aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~aF~~c~~L~~l~l~--~ 309 (401)
T 4fdw_A 256 ----P-----------NGVTNIASR--------AFYYCPELAEVTTYGSTFNDDPEAMI-HPYCLEGCPKLARFEIP--E 309 (401)
T ss_dssp ----E-----------TTCCEECTT--------TTTTCTTCCEEEEESSCCCCCTTCEE-CTTTTTTCTTCCEECCC--T
T ss_pred ----C-----------CCccEEChh--------HhhCCCCCCEEEeCCccccCCcccEE-CHHHhhCCccCCeEEeC--C
Confidence 1 112222210 0135678888888765211 122 22346788899999887 3
Q ss_pred CCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceec-CCCceEEEEcCCCCccccccCCCCCCCC
Q 036143 235 RNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLI-CNSLQEIQITPSCPKLKRLSLRLPPLDN 313 (355)
Q Consensus 235 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~-~~~L~~L~i~~~c~~L~~lp~~~~~l~~ 313 (355)
.+..+.. ..+..+++|+.+.+.. .++.|.. +++. + +|+.+.+. +. .+..++.+.- .
T Consensus 310 ~i~~I~~-------------~aF~~c~~L~~l~lp~--~l~~I~~--~aF~~~-~L~~l~l~-~n-~~~~l~~~~F--~- 366 (401)
T 4fdw_A 310 SIRILGQ-------------GLLGGNRKVTQLTIPA--NVTQINF--SAFNNT-GIKEVKVE-GT-TPPQVFEKVW--Y- 366 (401)
T ss_dssp TCCEECT-------------TTTTTCCSCCEEEECT--TCCEECT--TSSSSS-CCCEEEEC-CS-SCCBCCCSSC--C-
T ss_pred ceEEEhh-------------hhhcCCCCccEEEECc--cccEEcH--HhCCCC-CCCEEEEc-CC-CCcccccccc--c-
Confidence 4555532 1556778999999854 4777766 5655 5 89999996 43 5555543321 1
Q ss_pred CCCCCCCCeeEEEehhhhhcc
Q 036143 314 GQPSPSPALEVIKIRKELWES 334 (355)
Q Consensus 314 ~~~~~~~~L~~l~~~~~~~~~ 334 (355)
+...++..|+++.+..+.
T Consensus 367 ---~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 367 ---GFPDDITVIRVPAESVEK 384 (401)
T ss_dssp ---CSCTTCCEEEECGGGHHH
T ss_pred ---CCCCCccEEEeCHHHHHH
Confidence 222378899996665444
No 143
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=6e-07 Score=72.33 Aligned_cols=91 Identities=12% Similarity=0.079 Sum_probs=62.6
Q ss_pred CC-ccccccccceecCCCcccccc-CcccccCcccceecccCc-ccccccchhhhcC----CCcceeeecccCCccccch
Q 036143 5 VP-SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSK-MLIKFPAGILPKL----CNLYSLRLNWGSETSRETV 77 (355)
Q Consensus 5 lP-~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~-~~~~lP~~i~~~L----~~L~~L~l~~~~~~~~~~~ 77 (355)
+| ....-.+|+.||+++|.++.. -..+..+++|++|++++| .++.---.-++.+ ++|++|++++|...+..++
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 55 222335688888888876532 244678888888888888 4554322212554 3688888888877777777
Q ss_pred hHhhcccccccceEEEecc
Q 036143 78 QEAARSSDRLDTFVGYFSK 96 (355)
Q Consensus 78 ~~~l~~L~~L~~L~l~~~~ 96 (355)
. .+..+++|++|++..+.
T Consensus 133 ~-~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 I-ALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp H-HGGGCTTCCEEEEESCT
T ss_pred H-HHhcCCCCCEEECCCCC
Confidence 7 78888888888887554
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=2.7e-06 Score=68.54 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=62.9
Q ss_pred CCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhccccccccc----Ccccceeeccccc
Q 036143 197 SHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITIT----LPRLKKLWLSFLP 272 (355)
Q Consensus 197 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~ 272 (355)
.+|++|++++|. +++.. +..+.++++|++|++++|..+.+.-- ..+.. .++|++|+|++|+
T Consensus 61 ~~L~~LDLs~~~-Itd~G-L~~L~~~~~L~~L~L~~C~~ItD~gL-------------~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCL-------------ERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CCEEEEEEESCC-CCGGG-GGGGTTCSCCCEEEEESCTTCCHHHH-------------HHHHTCHHHHHHCCEEEEESCT
T ss_pred ceEeEEeCcCCC-ccHHH-HHHhcCCCCCCEEEeCCCCccCHHHH-------------HHHHhcccccCCCCEEEcCCCC
Confidence 368899999996 66633 33367899999999999987644310 02333 3579999999998
Q ss_pred ccceecCCCcee-cCCCceEEEEcCCCCccccc
Q 036143 273 ELKSVCSDNAVL-ICNSLQEIQITPSCPKLKRL 304 (355)
Q Consensus 273 ~l~~i~~~~~~l-~~~~L~~L~i~~~c~~L~~l 304 (355)
.++.-.. ..+ .+++|++|+++ +|+.+++.
T Consensus 126 ~ITD~Gl--~~L~~~~~L~~L~L~-~c~~Itd~ 155 (176)
T 3e4g_A 126 NVTDKGI--IALHHFRNLKYLFLS-DLPGVKEK 155 (176)
T ss_dssp TCCHHHH--HHGGGCTTCCEEEEE-SCTTCCCH
T ss_pred cCCHHHH--HHHhcCCCCCEEECC-CCCCCCch
Confidence 8765322 111 36799999999 99988764
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.01 E-value=1.8e-05 Score=72.92 Aligned_cols=228 Identities=11% Similarity=0.076 Sum_probs=126.8
Q ss_pred CCCCC--ccccccccceecCCCccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.|+ +|.++ +|+.+.+.. .++.++ ..+.+|.+|+.+++.+|.+..+|.+.|. ..+|+.+.+..+ .......
T Consensus 146 i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~ 220 (401)
T 4fdw_A 146 LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQ 220 (401)
T ss_dssp CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT--CCEECTT
T ss_pred ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc--hheehhh
Confidence 34455 55553 688888876 677775 4478899999999998889999888755 588999888743 2223333
Q ss_pred HhhcccccccceEEEeccCcccccc-ccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCC
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNTY-VKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREG 157 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~ 157 (355)
.+..+++|+.+.+.. +....... +.. ..|+.+..+-++..+......+ ...++...+....+...
T Consensus 221 -aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~---------c~~L~~l~l~~~~~~~~-- 286 (401)
T 4fdw_A 221 -AFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYY---------CPELAEVTTYGSTFNDD-- 286 (401)
T ss_dssp -TTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEEETTCCEECTTTTTT---------CTTCCEEEEESSCCCCC--
T ss_pred -HhhCCCCCCEEecCC-CccCcccccccc-CCccEEEeCCCccEEChhHhhC---------CCCCCEEEeCCccccCC--
Confidence 677888888888752 23222222 223 4455555332222221111121 22333444433322210
Q ss_pred ccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCc
Q 036143 158 VTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNE 237 (355)
Q Consensus 158 ~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~ 237 (355)
....++.. ....+++|+.+.+.+ .++.+.. ..+.++++|+.+.+.. .+.
T Consensus 287 ------------------~~~~I~~~--------aF~~c~~L~~l~l~~--~i~~I~~-~aF~~c~~L~~l~lp~--~l~ 335 (401)
T 4fdw_A 287 ------------------PEAMIHPY--------CLEGCPKLARFEIPE--SIRILGQ-GLLGGNRKVTQLTIPA--NVT 335 (401)
T ss_dssp ------------------TTCEECTT--------TTTTCTTCCEECCCT--TCCEECT-TTTTTCCSCCEEEECT--TCC
T ss_pred ------------------cccEECHH--------HhhCCccCCeEEeCC--ceEEEhh-hhhcCCCCccEEEECc--ccc
Confidence 01111110 013566788877763 3555433 3367788889888853 355
Q ss_pred eecccCcchhhhhcccccccccCcccceeecccccccceecCCC-ceecCCCceEEEEc
Q 036143 238 EIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDN-AVLICNSLQEIQIT 295 (355)
Q Consensus 238 ~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~-~~l~~~~L~~L~i~ 295 (355)
.+-. ..+..+ +|+.+.+.+. .+..+.... ..++ .+++.|++-
T Consensus 336 ~I~~-------------~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~-~~l~~l~vp 378 (401)
T 4fdw_A 336 QINF-------------SAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFP-DDITVIRVP 378 (401)
T ss_dssp EECT-------------TSSSSS-CCCEEEECCS-SCCBCCCSSCCCSC-TTCCEEEEC
T ss_pred EEcH-------------HhCCCC-CCCEEEEcCC-CCcccccccccCCC-CCccEEEeC
Confidence 5532 145566 8999988875 344443321 2221 267777773
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.99 E-value=1.3e-05 Score=72.74 Aligned_cols=66 Identities=12% Similarity=0.048 Sum_probs=37.2
Q ss_pred ccCcccccCcccceecccCcccc----------cccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEec
Q 036143 26 EVPEGMEMLENLVHLTIYSKMLI----------KFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFS 95 (355)
Q Consensus 26 ~lP~~i~~L~~L~~L~l~~~~~~----------~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 95 (355)
.+++++.++++|+.|.+.+.... .++.- +..+++|+.|+++++.. ..++ .+ .+++|++|.+..+
T Consensus 130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~l-l~~~P~L~~L~L~g~~~---l~l~-~~-~~~~L~~L~L~~~ 203 (362)
T 2ra8_A 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPV-LDAMPLLNNLKIKGTNN---LSIG-KK-PRPNLKSLEIISG 203 (362)
T ss_dssp HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHH-HHTCTTCCEEEEECCBT---CBCC-SC-BCTTCSEEEEECS
T ss_pred HHHHhhhhcchhhheeecCcchhhcccccccccCHHHH-HhcCCCCcEEEEeCCCC---ceec-cc-cCCCCcEEEEecC
Confidence 34555666777777777543211 12222 36677888888876421 2233 23 3677888887655
Q ss_pred cC
Q 036143 96 KL 97 (355)
Q Consensus 96 ~~ 97 (355)
..
T Consensus 204 ~l 205 (362)
T 2ra8_A 204 GL 205 (362)
T ss_dssp BC
T ss_pred CC
Confidence 44
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.94 E-value=6e-05 Score=69.25 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=43.9
Q ss_pred ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeec
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLN 67 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~ 67 (355)
+|.++++|+.+.+.. +++.+++. +.+|.+|+.+++..+ ++.++...|..+.+|+.+.+.
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 567788899998864 47777544 678899999999764 667776666777777776654
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.90 E-value=2e-06 Score=78.53 Aligned_cols=12 Identities=25% Similarity=0.166 Sum_probs=6.2
Q ss_pred cCCCCeEEEecC
Q 036143 222 LQNLEFLVVQSC 233 (355)
Q Consensus 222 L~~L~~L~l~~~ 233 (355)
.++|++|+++++
T Consensus 238 ~~~L~~L~Ls~N 249 (372)
T 3un9_A 238 HPSLELLHLYFN 249 (372)
T ss_dssp CSSCCEEECTTS
T ss_pred CCCCCEEeccCC
Confidence 355555555544
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.85 E-value=1.6e-05 Score=71.19 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=73.4
Q ss_pred ccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcc-eeeecccCCccccchhHhhccccccc
Q 036143 11 LLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLY-SLRLNWGSETSRETVQEAARSSDRLD 88 (355)
Q Consensus 11 l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~-~L~l~~~~~~~~~~~~~~l~~L~~L~ 88 (355)
+.+|+.+++++|+++.+|.. +.+|.+|+.+++.++ ++.++...|..+.+|+ .+++... ....... .+..+++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~--l~~I~~~-aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPAS--VTAIEFG-AFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTT--CCEECTT-TTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEccc--ceEEchh-hhhCCccCC
Confidence 77899999998888888765 688889999999887 8888888778899998 8888762 2223333 788888888
Q ss_pred ceEEEeccCccccc-cccccccccccc
Q 036143 89 TFVGYFSKLDDFNT-YVKSSDGQRSKH 114 (355)
Q Consensus 89 ~L~l~~~~~~~~~~-~~~~l~~L~~L~ 114 (355)
++.+..+....... .+..+..|+.+.
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEeCCCccCccchhhhcCCcchhhhc
Confidence 88886565555442 355666665543
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=9.5e-06 Score=70.16 Aligned_cols=83 Identities=17% Similarity=0.122 Sum_probs=47.8
Q ss_pred ccccce--ecCCCccccccCccc----ccCcccceecccCccccccc---chhhhcCCCcceeeecccCCccccchhHhh
Q 036143 11 LLALQC--LDLEYTAIKEVPEGM----EMLENLVHLTIYSKMLIKFP---AGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 11 l~~L~~--L~L~~~~~~~lP~~i----~~L~~L~~L~l~~~~~~~lP---~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
...|+. ++++.|....++..+ .++++|+.|++++|.+..++ ..+ +++++|++|+++++..... . .+
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~-~~l~~L~~L~Ls~N~i~~~---~-~l 214 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLSGNELKSE---R-EL 214 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHH-HHSTTCCEEECTTSCCCSG---G-GG
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHH-hhCCCCCEEECCCCccCCc---h-hh
Confidence 334444 555666444443322 45677777777777666543 334 6777777777777554222 2 33
Q ss_pred cccc--cccceEEEeccCc
Q 036143 82 RSSD--RLDTFVGYFSKLD 98 (355)
Q Consensus 82 ~~L~--~L~~L~l~~~~~~ 98 (355)
..+. +|++|.+.+|...
T Consensus 215 ~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp GGGTTSCCSEEECTTSTTG
T ss_pred hhcccCCcceEEccCCcCc
Confidence 3344 7777777665543
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.25 E-value=7.8e-05 Score=64.40 Aligned_cols=81 Identities=17% Similarity=0.132 Sum_probs=58.0
Q ss_pred cccccceecCCCcccccc---CcccccCcccceecccCcccccccchhhhcCC--CcceeeecccCCccccc-----hhH
Q 036143 10 KLLALQCLDLEYTAIKEV---PEGMEMLENLVHLTIYSKMLIKFPAGILPKLC--NLYSLRLNWGSETSRET-----VQE 79 (355)
Q Consensus 10 ~l~~L~~L~L~~~~~~~l---P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~--~L~~L~l~~~~~~~~~~-----~~~ 79 (355)
++.+|++|+|++|.++.+ |..++.+++|++|+|++|.+..+ .++ ..+. +|++|++.++....... ...
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL-DKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG-GGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhh-hhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 477899999999977754 46677899999999999988877 334 5666 89999999875432110 111
Q ss_pred hhcccccccceEE
Q 036143 80 AARSSDRLDTFVG 92 (355)
Q Consensus 80 ~l~~L~~L~~L~l 92 (355)
.+..+++|+.|+.
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4667777777653
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.18 E-value=7.1e-05 Score=61.08 Aligned_cols=89 Identities=16% Similarity=0.048 Sum_probs=60.2
Q ss_pred cccccccceecCCCc-ccc-----ccCcccccCcccceecccCccccc-----ccchhhhcCCCcceeeecccCCccccc
Q 036143 8 LAKLLALQCLDLEYT-AIK-----EVPEGMEMLENLVHLTIYSKMLIK-----FPAGILPKLCNLYSLRLNWGSETSRET 76 (355)
Q Consensus 8 i~~l~~L~~L~L~~~-~~~-----~lP~~i~~L~~L~~L~l~~~~~~~-----lP~~i~~~L~~L~~L~l~~~~~~~~~~ 76 (355)
+....+|++|+|++| .+. .+...+....+|++|++++|.+.. +...+ ...++|++|++++|.. ....
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L~~N~i-~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFI-SGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCC-CHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEECcCCcC-CHHH
Confidence 345678889999888 664 355566677889999999887654 33334 6678889999988653 2222
Q ss_pred ---hhHhhcccccccceEE--EeccCc
Q 036143 77 ---VQEAARSSDRLDTFVG--YFSKLD 98 (355)
Q Consensus 77 ---~~~~l~~L~~L~~L~l--~~~~~~ 98 (355)
+...+...++|++|++ .++.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 2225666778888888 555543
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.16 E-value=9e-05 Score=67.55 Aligned_cols=103 Identities=12% Similarity=0.105 Sum_probs=71.1
Q ss_pred cccccceecCCCcccccc-Cccc-----ccCcccceecccCccccc-----ccchhhhcCCCcceeeecccCCccccc--
Q 036143 10 KLLALQCLDLEYTAIKEV-PEGM-----EMLENLVHLTIYSKMLIK-----FPAGILPKLCNLYSLRLNWGSETSRET-- 76 (355)
Q Consensus 10 ~l~~L~~L~L~~~~~~~l-P~~i-----~~L~~L~~L~l~~~~~~~-----lP~~i~~~L~~L~~L~l~~~~~~~~~~-- 76 (355)
.+.+|++|+|++|.++.. ...+ ....+|++|++++|.+.. ++..+ ..+++|++|++++|.. ....
T Consensus 124 ~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l-~~~g~~ 201 (372)
T 3un9_A 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGL-GDEGLE 201 (372)
T ss_dssp HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSC-HHHHHH
T ss_pred HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCC-CcHHHH
Confidence 467899999999988632 2222 246789999999998765 44444 7889999999998754 2222
Q ss_pred -hhHhhcccccccceEEEeccCccc-----cccccccccccccc
Q 036143 77 -VQEAARSSDRLDTFVGYFSKLDDF-----NTYVKSSDGQRSKH 114 (355)
Q Consensus 77 -~~~~l~~L~~L~~L~l~~~~~~~~-----~~~~~~l~~L~~L~ 114 (355)
+...+...++|++|++..|.+.+. ...+...+.|+.|+
T Consensus 202 ~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~ 245 (372)
T 3un9_A 202 LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH 245 (372)
T ss_dssp HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEe
Confidence 222667788999999988776542 22334456677776
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.15 E-value=0.01 Score=54.12 Aligned_cols=100 Identities=14% Similarity=0.201 Sum_probs=49.6
Q ss_pred cCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccccc
Q 036143 195 KFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPEL 274 (355)
Q Consensus 195 ~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 274 (355)
.+.+|+.+.+.+. +..+ ....+.++++|+.+.+. ..+..+.. ..+..+.+|+.+.+-+ .+
T Consensus 263 ~c~~L~~i~lp~~--~~~I-~~~aF~~c~~L~~i~l~--~~i~~I~~-------------~aF~~c~~L~~i~lp~--~v 322 (394)
T 4gt6_A 263 SCAYLASVKMPDS--VVSI-GTGAFMNCPALQDIEFS--SRITELPE-------------SVFAGCISLKSIDIPE--GI 322 (394)
T ss_dssp TCSSCCEEECCTT--CCEE-CTTTTTTCTTCCEEECC--TTCCEECT-------------TTTTTCTTCCEEECCT--TC
T ss_pred ecccccEEecccc--ccee-cCcccccccccccccCC--CcccccCc-------------eeecCCCCcCEEEeCC--cc
Confidence 3455666555332 1221 11224556667766664 23444422 1444566777777643 35
Q ss_pred ceecCCCceec-CCCceEEEEcCCCCccccccCC-CCCCCCCCCCCCCCeeEEEe
Q 036143 275 KSVCSDNAVLI-CNSLQEIQITPSCPKLKRLSLR-LPPLDNGQPSPSPALEVIKI 327 (355)
Q Consensus 275 ~~i~~~~~~l~-~~~L~~L~i~~~c~~L~~lp~~-~~~l~~~~~~~~~~L~~l~~ 327 (355)
+.|.. .++. +.+|+.+.+- ..++.+..+ ....+ +|+.|++
T Consensus 323 ~~I~~--~aF~~C~~L~~i~ip---~sv~~I~~~aF~~C~--------~L~~i~~ 364 (394)
T 4gt6_A 323 TQILD--DAFAGCEQLERIAIP---SSVTKIPESAFSNCT--------ALNNIEY 364 (394)
T ss_dssp CEECT--TTTTTCTTCCEEEEC---TTCCBCCGGGGTTCT--------TCCEEEE
T ss_pred cEehH--hHhhCCCCCCEEEEC---cccCEEhHhHhhCCC--------CCCEEEE
Confidence 55644 4443 4566666663 234444322 23333 6777776
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.04 E-value=0.00015 Score=59.14 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=64.4
Q ss_pred cccccccceecCCCccccc-----cCcccccCcccceecccCccccc-----ccchhhhcCCCcceeee--cccCCcccc
Q 036143 8 LAKLLALQCLDLEYTAIKE-----VPEGMEMLENLVHLTIYSKMLIK-----FPAGILPKLCNLYSLRL--NWGSETSRE 75 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~~~~-----lP~~i~~L~~L~~L~l~~~~~~~-----lP~~i~~~L~~L~~L~l--~~~~~~~~~ 75 (355)
+...++|++|+|++|.+.. +...+....+|++|++++|.+.. +...+ ...++|++|++ +++.. +..
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L-~~n~~L~~L~L~~~~N~i-~~~ 138 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL-QSNTSLIELRIDNQSQPL-GNN 138 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG-GGCSSCCEEECCCCSSCC-CHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHH-HhCCCceEEEecCCCCCC-CHH
Confidence 4456889999999998753 55566677899999999998775 44455 88899999999 65543 333
Q ss_pred ch---hHhhcccccccceEEEeccC
Q 036143 76 TV---QEAARSSDRLDTFVGYFSKL 97 (355)
Q Consensus 76 ~~---~~~l~~L~~L~~L~l~~~~~ 97 (355)
.. ...+...++|++|++.++.+
T Consensus 139 g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 139 VEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCcCEEeccCCCC
Confidence 32 22556668899999976654
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.74 E-value=0.0018 Score=49.32 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=47.3
Q ss_pred ceecCCCcccc--ccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCC
Q 036143 15 QCLDLEYTAIK--EVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSE 71 (355)
Q Consensus 15 ~~L~L~~~~~~--~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~ 71 (355)
.+++.++++++ .+|..+. .+|++|+|++|.+..+|.++|..+++|++|++.++..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 57888888888 8997654 3699999999999999999889999999999998654
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.38 E-value=0.037 Score=50.44 Aligned_cols=93 Identities=12% Similarity=0.162 Sum_probs=55.0
Q ss_pred cCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccccc
Q 036143 195 KFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPEL 274 (355)
Q Consensus 195 ~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 274 (355)
.+.+|+.+.+.+ .++.+.. ..+.++++|+.+++.+ .++.+-. .++..+.+|+.+.+.. .+
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~-~aF~~c~~L~~i~lp~--~v~~I~~-------------~aF~~c~~L~~i~lp~--~l 354 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGE-EAFESCTSLVSIDLPY--LVEEIGK-------------RSFRGCTSLSNINFPL--SL 354 (394)
T ss_dssp TCTTCCEEEECT--TCCEECT-TTTTTCTTCCEECCCT--TCCEECT-------------TTTTTCTTCCEECCCT--TC
T ss_pred cccccccccccc--ccceech-hhhcCCCCCCEEEeCC--cccEEhH-------------HhccCCCCCCEEEECc--cc
Confidence 566777777753 3444332 2366788888888752 3445421 1555677888888854 36
Q ss_pred ceecCCCceec-CCCceEEEEcCCCCccccccCCCCCCC
Q 036143 275 KSVCSDNAVLI-CNSLQEIQITPSCPKLKRLSLRLPPLD 312 (355)
Q Consensus 275 ~~i~~~~~~l~-~~~L~~L~i~~~c~~L~~lp~~~~~l~ 312 (355)
+.|.. +++. +++|+.+.+. ..++.+.......+
T Consensus 355 ~~I~~--~aF~~C~~L~~i~lp---~~~~~~~~~F~~c~ 388 (394)
T 4fs7_A 355 RKIGA--NAFQGCINLKKVELP---KRLEQYRYDFEDTT 388 (394)
T ss_dssp CEECT--TTBTTCTTCCEEEEE---GGGGGGGGGBCTTC
T ss_pred cEehH--HHhhCCCCCCEEEEC---CCCEEhhheecCCC
Confidence 77755 5654 6788888885 23444443343333
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.19 E-value=0.0022 Score=57.96 Aligned_cols=83 Identities=17% Similarity=0.133 Sum_probs=55.7
Q ss_pred ccccccccceecCCCcccc----------ccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccc
Q 036143 7 SLAKLLALQCLDLEYTAIK----------EVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRET 76 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~----------~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~ 76 (355)
++..+.+|+.|.+.+.... .++.-+..+++|+.|++++|....+|. + .+++|++|++..+.. ....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~--~~~~L~~L~L~~~~l-~~~~ 209 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K--PRPNLKSLEIISGGL-PDSV 209 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C--BCTTCSEEEEECSBC-CHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c--cCCCCcEEEEecCCC-ChHH
Confidence 4667888888888654221 233444677899999998884334554 4 388999999986543 3344
Q ss_pred hhHhhc--ccccccceEEEe
Q 036143 77 VQEAAR--SSDRLDTFVGYF 94 (355)
Q Consensus 77 ~~~~l~--~L~~L~~L~l~~ 94 (355)
+. .+. .+++|++|.++.
T Consensus 210 l~-~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 210 VE-DILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HH-HHHHSBCTTCCEEEEEC
T ss_pred HH-HHHHccCCCCcEEEEec
Confidence 44 444 788999998863
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.36 E-value=0.016 Score=43.97 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=35.6
Q ss_pred CCC-ccccccccceecCCCccccccCcc-cccCcccceecccCcccc
Q 036143 4 RVP-SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLI 48 (355)
Q Consensus 4 ~lP-~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~ 48 (355)
.+| .+ -.+|++|+|++|.++.+|.. +..+.+|++|+|++|...
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 677 44 34799999999999999877 578999999999998543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.38 E-value=0.25 Score=44.49 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=16.4
Q ss_pred ccCcccceecccCcccccccchhhhcCCCcceeeec
Q 036143 32 EMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLN 67 (355)
Q Consensus 32 ~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~ 67 (355)
.++.+|+.+.+.. .+..++...|..+++|+.+.+.
T Consensus 260 ~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 260 QNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp TTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEEC
T ss_pred ceeehhccccccc-cceecccccccccccccccccc
Confidence 3444444444433 2444444444555555555554
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.01 E-value=0.14 Score=46.19 Aligned_cols=82 Identities=20% Similarity=0.159 Sum_probs=58.4
Q ss_pred ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
.+.++.+|+.+.+.. ++..++.. +..+.+|+.+.+.++.++.++...|.++.+|+.+.+... .....-. .+.+++
T Consensus 258 aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~-aF~~C~ 333 (379)
T 4h09_A 258 LLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVY-AFKNCK 333 (379)
T ss_dssp TTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTT-TTTTCT
T ss_pred ccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHH-HhhCCC
Confidence 444566666666643 35555443 578999999999998899998887899999999999743 2222223 577778
Q ss_pred cccceEE
Q 036143 86 RLDTFVG 92 (355)
Q Consensus 86 ~L~~L~l 92 (355)
+|+.+.+
T Consensus 334 ~L~~i~i 340 (379)
T 4h09_A 334 ALSTISY 340 (379)
T ss_dssp TCCCCCC
T ss_pred CCCEEEE
Confidence 8887766
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.88 E-value=0.42 Score=43.27 Aligned_cols=80 Identities=11% Similarity=0.166 Sum_probs=42.0
Q ss_pred cccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 8 LAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
+.++.+|+.+.+..+ +..+ ...+.++.+|+.+.+.. .+..++...|..+.+|+.+++... .....-. .+..+++
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~-aF~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--ITQILDD-AFAGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTT-TTTTCTT
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc--ccEehHh-HhhCCCC
Confidence 444555555555443 2223 22345566666666643 455566665566666766666532 1112222 4556666
Q ss_pred ccceEE
Q 036143 87 LDTFVG 92 (355)
Q Consensus 87 L~~L~l 92 (355)
|+.+.+
T Consensus 336 L~~i~i 341 (394)
T 4gt6_A 336 LERIAI 341 (394)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 666666
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=79.80 E-value=0.53 Score=38.23 Aligned_cols=82 Identities=9% Similarity=0.023 Sum_probs=57.0
Q ss_pred ccccceecCCCc-ccc-----ccCcccccCcccceecccCcccccc-----cchhhhcCCCcceeeecccCCccccchh-
Q 036143 11 LLALQCLDLEYT-AIK-----EVPEGMEMLENLVHLTIYSKMLIKF-----PAGILPKLCNLYSLRLNWGSETSRETVQ- 78 (355)
Q Consensus 11 l~~L~~L~L~~~-~~~-----~lP~~i~~L~~L~~L~l~~~~~~~l-----P~~i~~~L~~L~~L~l~~~~~~~~~~~~- 78 (355)
-..|+.|+|+++ .+. .+-+.+..-..|+.|+|++|.+..- -..+ ..-+.|++|++.++.. +..+..
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL-~~N~tL~~L~L~~N~I-g~~Ga~a 117 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVESNFL-TPELLAR 117 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCSSBC-CHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH-hcCCccCeEecCCCcC-CHHHHHH
Confidence 467999999985 654 3555666778899999999987642 2233 6778899999998653 333333
Q ss_pred --HhhcccccccceEEEe
Q 036143 79 --EAARSSDRLDTFVGYF 94 (355)
Q Consensus 79 --~~l~~L~~L~~L~l~~ 94 (355)
..+..=+.|++|++..
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 1444455799999863
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=76.61 E-value=1.7 Score=35.24 Aligned_cols=82 Identities=11% Similarity=-0.034 Sum_probs=52.6
Q ss_pred ccCcccceecccCc-cccc-----ccchhhhcCCCcceeeecccCCcc--ccchhHhhcccccccceEEEeccCcc----
Q 036143 32 EMLENLVHLTIYSK-MLIK-----FPAGILPKLCNLYSLRLNWGSETS--RETVQEAARSSDRLDTFVGYFSKLDD---- 99 (355)
Q Consensus 32 ~~L~~L~~L~l~~~-~~~~-----lP~~i~~~L~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~~L~l~~~~~~~---- 99 (355)
.+-..|+.|+++++ .+.. +-..+ ..-+.|+.|++++|.... ...+...+..=+.|++|++.++.+.+
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 45578999999985 5542 33334 677889999999875421 12222255566789999998877654
Q ss_pred -ccccccccccccccc
Q 036143 100 -FNTYVKSSDGQRSKH 114 (355)
Q Consensus 100 -~~~~~~~l~~L~~L~ 114 (355)
+.+.+..-+.|+.|.
T Consensus 117 ala~aL~~N~tL~~L~ 132 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFK 132 (197)
T ss_dssp HHHHHTTTTCCCSEEE
T ss_pred HHHHHHhhCCceeEEE
Confidence 223344445566666
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.30 E-value=81 Score=21.88 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=16.1
Q ss_pred cccCcccceecccCcccccccchhhhcCCCcceeeec
Q 036143 31 MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLN 67 (355)
Q Consensus 31 i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~ 67 (355)
+.+|.+|+.+.+..+ ++.+....|..+.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 344555555554442 333333333444555544443
Done!