BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036145
         (375 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HDD|C Chain C, Crystal Structure Of An Engrailed Homeodomain-Dna Complex
           At 2.8 Angstroms Resolution: A Framework For
           Understanding Homeodomain-Dna Interactions
 pdb|1HDD|D Chain D, Crystal Structure Of An Engrailed Homeodomain-Dna Complex
           At 2.8 Angstroms Resolution: A Framework For
           Understanding Homeodomain-Dna Interactions
 pdb|2JWT|A Chain A, Solution Structure Of Engrailed Homeodomain Wt
          Length = 61

 Score = 28.5 bits (62), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 56  EPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSR 115
           E +PR     EQ+  L+  FN       R    R R QL     + +A +  WFQN++++
Sbjct: 3   EKRPRTAFSSEQLARLKREFNEN-----RYLTERRRQQLSSELGLNEAQIKIWFQNKRAK 57

Query: 116 SK 117
            K
Sbjct: 58  IK 59


>pdb|2GJY|A Chain A, Nmr Solution Structure Of Tensin1 Ptb Domain
          Length = 144

 Score = 28.5 bits (62), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 313 HGGAARSTVFINDVAFEVVAGPFNVREAFGEDAV 346
           H GAA + +FIN V  E + GP  + +A  E  V
Sbjct: 3   HMGAACNVLFINSVEMESLTGPQAISKAVAETLV 36


>pdb|2KXN|B Chain B, Nmr Structure Of Human Tra2beta1 Rrm In Complex With
           Aagaac Rna
          Length = 129

 Score = 28.5 bits (62), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 33  SLMSNGNHRPSYTTVPGCEERSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRA 92
            L+  G+H  S T        S     R NP P        +F   +    RD    +R 
Sbjct: 13  GLVPRGSHMASMTGGQQMGRGSRHVGNRANPDPN---CCLGVFGLSLYTTERD----LRE 65

Query: 93  QLQEYGQVGDANVFYWFQNRKSRS 116
              +YG + D ++ Y  Q+R+SR 
Sbjct: 66  VFSKYGPIADVSIVYDQQSRRSRG 89


>pdb|3HDD|A Chain A, Engrailed Homeodomain Dna Complex
 pdb|3HDD|B Chain B, Engrailed Homeodomain Dna Complex
          Length = 60

 Score = 28.5 bits (62), Expect = 7.0,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 56  EPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSR 115
           E +PR     EQ+  L+  FN       R    R R QL     + +A +  WFQN++++
Sbjct: 1   EKRPRTAFSSEQLARLKREFNEN-----RYLTERRRQQLSSELGLNEAQIKIWFQNKRAK 55

Query: 116 SK 117
            K
Sbjct: 56  IK 57


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,074,101
Number of Sequences: 62578
Number of extensions: 298505
Number of successful extensions: 720
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 719
Number of HSP's gapped (non-prelim): 5
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)