Query 036145
Match_columns 375
No_of_seqs 164 out of 507
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 16:49:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fjl_A Paired protein; DNA-bin 99.8 4.7E-21 1.6E-25 149.8 4.0 72 46-122 8-79 (81)
2 2dms_A Homeobox protein OTX2; 99.8 3.6E-21 1.2E-25 150.2 2.5 66 54-124 5-70 (80)
3 2da3_A Alpha-fetoprotein enhan 99.8 3.9E-21 1.3E-25 148.9 2.7 67 50-121 11-77 (80)
4 2dmq_A LIM/homeobox protein LH 99.8 5.8E-21 2E-25 148.5 2.7 66 54-124 5-70 (80)
5 1zq3_P PRD-4, homeotic bicoid 99.8 7.2E-21 2.5E-25 144.7 3.2 65 55-124 1-65 (68)
6 2cue_A Paired box protein PAX6 99.8 1E-20 3.6E-25 147.8 4.2 66 54-124 5-70 (80)
7 2kt0_A Nanog, homeobox protein 99.8 1.6E-20 5.4E-25 147.3 4.3 64 53-121 19-82 (84)
8 2dmt_A Homeobox protein BARH-l 99.8 1.5E-20 5.2E-25 146.9 4.0 65 52-121 13-77 (80)
9 2cra_A Homeobox protein HOX-B1 99.8 8.5E-21 2.9E-25 144.8 2.5 63 54-121 5-67 (70)
10 2dmu_A Homeobox protein goosec 99.8 1.4E-20 4.6E-25 143.4 3.6 63 54-121 5-67 (70)
11 2vi6_A Homeobox protein nanog; 99.8 8.9E-21 3.1E-25 141.4 2.5 60 56-120 3-62 (62)
12 2da1_A Alpha-fetoprotein enhan 99.8 7.2E-21 2.5E-25 144.6 2.0 63 54-121 5-67 (70)
13 2hdd_A Protein (engrailed home 99.8 1E-20 3.4E-25 140.7 2.4 59 56-119 3-61 (61)
14 3a01_A Homeodomain-containing 99.8 1.1E-20 3.7E-25 152.4 2.8 70 54-128 15-84 (93)
15 2k40_A Homeobox expressed in E 99.8 1.1E-20 3.6E-25 142.9 2.3 64 56-124 1-64 (67)
16 2da2_A Alpha-fetoprotein enhan 99.8 9.4E-21 3.2E-25 144.0 1.9 63 54-121 5-67 (70)
17 1ig7_A Homeotic protein MSX-1; 99.8 1.5E-20 5.3E-25 137.9 3.0 57 57-118 1-57 (58)
18 1nk2_P Homeobox protein VND; h 99.8 2.5E-20 8.6E-25 144.7 4.2 66 53-123 6-71 (77)
19 2h1k_A IPF-1, pancreatic and d 99.8 1.7E-20 5.7E-25 140.6 2.9 60 56-120 3-62 (63)
20 1puf_A HOX-1.7, homeobox prote 99.8 2.7E-20 9.3E-25 144.6 3.9 64 54-122 11-74 (77)
21 2djn_A Homeobox protein DLX-5; 99.8 1.7E-20 5.6E-25 143.2 2.5 63 54-121 5-67 (70)
22 2l7z_A Homeobox protein HOX-A1 99.8 2.1E-20 7.3E-25 144.1 2.9 66 54-124 5-70 (73)
23 1bw5_A ISL-1HD, insulin gene e 99.8 1.5E-20 5.2E-25 141.7 1.9 63 55-122 2-64 (66)
24 1jgg_A Segmentation protein EV 99.8 2.5E-20 8.5E-25 138.1 2.8 58 57-119 2-59 (60)
25 2e1o_A Homeobox protein PRH; D 99.8 3.4E-20 1.2E-24 141.5 3.6 63 54-121 5-67 (70)
26 1ahd_P Antennapedia protein mu 99.8 2.3E-20 7.7E-25 142.2 2.1 62 56-122 2-63 (68)
27 2da4_A Hypothetical protein DK 99.8 1.9E-20 6.5E-25 146.1 1.7 63 53-120 5-71 (80)
28 1ftt_A TTF-1 HD, thyroid trans 99.8 2.3E-20 7.8E-25 141.9 2.1 64 56-124 2-65 (68)
29 2cuf_A FLJ21616 protein; homeo 99.8 6.3E-20 2.2E-24 147.8 4.6 68 54-122 5-83 (95)
30 1wh5_A ZF-HD homeobox family p 99.8 5.7E-20 2E-24 145.2 3.9 62 53-119 14-79 (80)
31 1b8i_A Ultrabithorax, protein 99.8 3.2E-20 1.1E-24 145.8 2.4 63 54-121 18-80 (81)
32 1yz8_P Pituitary homeobox 2; D 99.8 1.4E-20 4.9E-25 142.8 0.3 64 55-123 2-65 (68)
33 3a02_A Homeobox protein arista 99.8 3.2E-20 1.1E-24 137.6 2.1 58 59-121 2-59 (60)
34 2m0c_A Homeobox protein arista 99.8 5.1E-20 1.7E-24 140.8 3.2 66 52-122 5-70 (75)
35 2r5y_A Homeotic protein sex co 99.8 3.9E-20 1.3E-24 146.9 2.3 64 53-121 25-88 (88)
36 1uhs_A HOP, homeodomain only p 99.8 7.8E-20 2.7E-24 140.1 3.4 60 57-121 2-62 (72)
37 1b72_A Protein (homeobox prote 99.8 6.9E-20 2.3E-24 148.1 2.9 64 54-122 32-95 (97)
38 2dn0_A Zinc fingers and homeob 99.8 5.8E-20 2E-24 142.4 2.1 64 54-122 6-69 (76)
39 2da5_A Zinc fingers and homeob 99.8 7.6E-20 2.6E-24 141.9 2.5 62 57-123 8-69 (75)
40 3rkq_A Homeobox protein NKX-2. 99.8 1.3E-19 4.4E-24 131.9 3.3 57 56-117 2-58 (58)
41 2hi3_A Homeodomain-only protei 99.8 1.2E-19 3.9E-24 139.7 3.1 60 57-121 3-63 (73)
42 2ecb_A Zinc fingers and homeob 99.8 2E-19 7E-24 146.0 4.4 61 59-124 14-74 (89)
43 1wh7_A ZF-HD homeobox family p 99.8 1.5E-19 5.1E-24 143.3 3.4 63 51-119 12-79 (80)
44 2ly9_A Zinc fingers and homeob 99.8 1.7E-19 5.8E-24 138.4 2.9 63 55-122 5-67 (74)
45 1akh_A Protein (mating-type pr 99.8 1.3E-19 4.5E-24 134.1 1.9 59 54-117 3-61 (61)
46 2dmp_A Zinc fingers and homeob 99.8 3.9E-19 1.3E-23 142.5 4.6 63 57-124 14-76 (89)
47 2da6_A Hepatocyte nuclear fact 99.7 3.8E-19 1.3E-23 148.4 4.4 69 54-123 4-89 (102)
48 1puf_B PRE-B-cell leukemia tra 99.7 3E-19 1E-23 137.0 3.4 65 56-125 1-68 (73)
49 3a03_A T-cell leukemia homeobo 99.7 2.1E-19 7.2E-24 132.0 2.3 54 61-119 2-55 (56)
50 1b72_B Protein (PBX1); homeodo 99.7 5.6E-19 1.9E-23 139.3 4.0 65 56-125 1-68 (87)
51 1du6_A PBX1, homeobox protein 99.7 2.5E-19 8.6E-24 134.0 1.9 60 55-119 2-64 (64)
52 1lfb_A Liver transcription fac 99.7 3.3E-19 1.1E-23 146.9 1.9 69 54-123 7-92 (99)
53 2ecc_A Homeobox and leucine zi 99.7 5.3E-19 1.8E-23 140.5 2.4 59 58-121 5-63 (76)
54 3nar_A ZHX1, zinc fingers and 99.7 6.8E-19 2.3E-23 142.2 2.4 64 53-121 22-85 (96)
55 1x2n_A Homeobox protein pknox1 99.7 1.6E-18 5.4E-23 132.9 3.6 63 54-121 5-70 (73)
56 1k61_A Mating-type protein alp 99.7 1.6E-18 5.5E-23 128.2 2.5 56 59-119 1-59 (60)
57 2e19_A Transcription factor 8; 99.7 2.2E-18 7.6E-23 131.2 2.5 56 59-119 6-61 (64)
58 1mnm_C Protein (MAT alpha-2 tr 99.7 2.9E-18 9.9E-23 135.9 2.6 61 53-118 24-87 (87)
59 1e3o_C Octamer-binding transcr 99.7 2.4E-18 8E-23 150.5 2.3 61 54-119 99-159 (160)
60 1au7_A Protein PIT-1, GHF-1; c 99.7 2.5E-18 8.6E-23 148.8 2.4 62 54-120 85-146 (146)
61 2xsd_C POU domain, class 3, tr 99.7 1.8E-18 6.3E-23 152.5 1.5 66 52-122 95-160 (164)
62 2cqx_A LAG1 longevity assuranc 99.7 1.2E-18 4.1E-23 135.2 0.0 61 55-120 7-68 (72)
63 3d1n_I POU domain, class 6, tr 99.7 6.3E-18 2.2E-22 146.1 3.7 61 53-118 90-150 (151)
64 2dmn_A Homeobox protein TGIF2L 99.7 7.9E-18 2.7E-22 133.2 3.1 65 54-122 5-71 (83)
65 1le8_B Mating-type protein alp 99.7 6.5E-18 2.2E-22 133.2 2.2 61 57-122 3-66 (83)
66 2l9r_A Homeobox protein NKX-3. 99.7 3.9E-18 1.3E-22 132.3 0.5 56 62-122 10-65 (69)
67 2d5v_A Hepatocyte nuclear fact 99.7 1.4E-17 4.6E-22 145.1 2.2 63 54-121 95-157 (164)
68 3l1p_A POU domain, class 5, tr 99.6 2.3E-17 7.8E-22 143.8 1.9 61 54-119 94-154 (155)
69 3nau_A Zinc fingers and homeob 99.6 2.4E-17 8.2E-22 128.4 1.5 53 63-120 11-63 (66)
70 1wi3_A DNA-binding protein SAT 99.6 3.1E-17 1.1E-21 129.4 2.0 60 54-118 5-65 (71)
71 1x2m_A LAG1 longevity assuranc 99.6 2.2E-17 7.7E-22 127.3 -0.0 50 65-119 9-59 (64)
72 3k2a_A Homeobox protein MEIS2; 99.6 2.1E-16 7.1E-21 120.8 1.7 59 62-125 4-65 (67)
73 1ic8_A Hepatocyte nuclear fact 99.5 7.1E-16 2.4E-20 140.4 0.4 65 54-119 113-194 (194)
74 2h8r_A Hepatocyte nuclear fact 99.4 2E-14 6.9E-19 133.7 3.1 64 53-117 139-219 (221)
75 2da7_A Zinc finger homeobox pr 99.4 4.3E-14 1.5E-18 111.7 1.3 47 64-115 13-59 (71)
76 1mh3_A Maltose binding-A1 home 99.4 5.8E-14 2E-18 131.7 1.2 56 57-117 366-421 (421)
77 2lk2_A Homeobox protein TGIF1; 99.3 5.9E-13 2E-17 108.8 1.8 58 61-123 10-70 (89)
78 2nzz_A Penetratin conjugated G 98.7 1.8E-09 6.3E-14 75.7 0.4 23 103-125 1-23 (37)
79 3fcg_A F1 capsule-anchoring pr 85.5 0.25 8.6E-06 40.2 1.2 25 316-340 26-53 (90)
80 2ys9_A Homeobox and leucine zi 76.7 0.64 2.2E-05 36.7 0.6 38 68-110 18-55 (70)
81 3hug_A RNA polymerase sigma fa 72.5 1.4 4.6E-05 33.9 1.5 49 62-120 37-85 (92)
82 2rgt_A Fusion of LIM/homeobox 71.0 0.059 2E-06 46.3 -7.3 30 54-84 134-163 (169)
83 2glo_A Brinker CG9653-PA; prot 66.0 2.4 8.3E-05 30.2 1.6 46 59-110 2-47 (59)
84 1jko_C HIN recombinase, DNA-in 64.0 1.7 5.7E-05 28.6 0.3 43 62-114 5-47 (52)
85 1hlv_A CENP-B, major centromer 63.7 3.9 0.00013 32.6 2.5 50 58-115 3-52 (131)
86 2o8x_A Probable RNA polymerase 63.5 2 6.7E-05 30.5 0.6 47 62-118 15-61 (70)
87 3mzy_A RNA polymerase sigma-H 60.7 2.6 8.8E-05 33.5 1.0 49 62-121 109-157 (164)
88 2elh_A CG11849-PA, LD40883P; s 60.6 5.5 0.00019 30.5 2.8 43 57-109 17-59 (87)
89 1tc3_C Protein (TC3 transposas 59.6 4.1 0.00014 26.1 1.6 40 62-111 5-44 (51)
90 1je8_A Nitrate/nitrite respons 59.2 2.1 7.1E-05 32.5 0.2 53 58-121 17-69 (82)
91 1p4w_A RCSB; solution structur 58.1 3.9 0.00013 32.7 1.6 49 58-117 30-78 (99)
92 1fi6_A EH domain protein REPS1 54.7 4.7 0.00016 30.5 1.5 45 61-109 1-49 (92)
93 1fse_A GERE; helix-turn-helix 53.2 4 0.00014 29.1 0.8 50 58-118 7-56 (74)
94 1tyg_B YJBS; alpha beta barrel 51.7 7.8 0.00027 30.9 2.4 47 316-362 18-69 (87)
95 3i5g_B Myosin regulatory light 51.4 21 0.00071 29.2 5.0 39 57-95 4-46 (153)
96 3c57_A Two component transcrip 50.2 3 0.0001 32.5 -0.3 47 62-119 27-73 (95)
97 3fip_A Outer membrane usher pr 50.1 6.3 0.00021 40.1 2.0 26 316-341 128-156 (493)
98 2rnj_A Response regulator prot 49.9 3.1 0.0001 31.8 -0.3 48 61-119 28-75 (91)
99 2lv7_A Calcium-binding protein 49.7 13 0.00045 28.9 3.4 52 57-110 24-79 (100)
100 2kmm_A Guanosine-3',5'-BIS(dip 48.8 15 0.00053 26.5 3.4 41 318-358 2-49 (73)
101 2p7v_B Sigma-70, RNA polymeras 48.3 4.9 0.00017 28.9 0.6 46 62-117 5-54 (68)
102 1s7o_A Hypothetical UPF0122 pr 46.6 7.1 0.00024 31.8 1.4 50 62-121 22-71 (113)
103 1x3u_A Transcriptional regulat 46.3 3 0.0001 30.3 -0.8 46 63-119 17-62 (79)
104 2qko_A Possible transcriptiona 45.7 4.5 0.00015 33.5 0.1 50 60-115 25-75 (215)
105 1xsv_A Hypothetical UPF0122 pr 44.3 8.2 0.00028 31.2 1.4 51 62-122 25-75 (113)
106 2hxi_A Putative transcriptiona 43.8 6 0.00021 34.9 0.6 58 51-114 17-75 (241)
107 3rfz_B Outer membrane usher pr 42.4 8.6 0.00029 41.5 1.6 26 316-341 263-291 (843)
108 1ku3_A Sigma factor SIGA; heli 42.0 7.2 0.00025 28.4 0.7 46 62-117 10-59 (73)
109 1rp3_A RNA polymerase sigma fa 39.4 8.3 0.00028 32.6 0.8 48 62-119 187-234 (239)
110 1c07_A Protein (epidermal grow 39.0 8 0.00027 29.5 0.6 45 61-109 2-50 (95)
111 1tty_A Sigma-A, RNA polymerase 37.2 8.3 0.00028 29.3 0.4 48 62-119 18-69 (87)
112 1or7_A Sigma-24, RNA polymeras 36.8 8.3 0.00028 31.8 0.4 48 63-120 141-188 (194)
113 3aqt_A Bacterial regulatory pr 36.1 2.7 9.4E-05 36.1 -2.8 44 68-117 52-95 (245)
114 2x48_A CAG38821; archeal virus 35.8 5.8 0.0002 27.2 -0.6 40 61-110 12-53 (55)
115 2q0o_A Probable transcriptiona 35.1 9.9 0.00034 33.4 0.6 50 58-118 171-220 (236)
116 3f6g_B Alpha-isopropylmalate s 35.0 18 0.00062 30.3 2.2 36 316-351 19-66 (127)
117 2x7l_M HIV REV; nuclear export 34.5 8.7 0.0003 32.8 0.1 40 68-126 15-54 (115)
118 1eh2_A EPS15; calcium binding, 34.1 20 0.00069 28.5 2.2 47 59-109 5-54 (106)
119 3lph_A Protein REV; helix-loop 33.7 18 0.00063 28.6 1.8 39 68-125 18-56 (72)
120 3ulq_B Transcriptional regulat 33.0 13 0.00043 29.0 0.8 44 57-111 24-67 (90)
121 2jpc_A SSRB; DNA binding prote 32.5 8.5 0.00029 26.6 -0.2 42 66-118 2-43 (61)
122 3bni_A Putative TETR-family tr 31.8 10 0.00036 32.0 0.2 42 68-115 49-90 (229)
123 3clo_A Transcriptional regulat 31.8 12 0.00042 33.5 0.6 49 60-119 195-243 (258)
124 2eqr_A N-COR1, N-COR, nuclear 31.6 25 0.00085 25.7 2.2 53 54-114 6-59 (61)
125 2iai_A Putative transcriptiona 31.1 8.8 0.0003 32.4 -0.4 44 67-116 35-78 (230)
126 1u78_A TC3 transposase, transp 30.8 25 0.00085 27.6 2.2 41 61-111 5-45 (141)
127 2hxo_A Putative TETR-family tr 29.9 29 0.00098 30.3 2.7 53 56-114 9-62 (237)
128 2np3_A Putative TETR-family re 29.9 13 0.00046 30.5 0.5 44 68-117 36-79 (212)
129 2pmy_A RAS and EF-hand domain- 29.8 9.6 0.00033 28.3 -0.4 53 53-109 11-67 (91)
130 2k5p_A THis protein, thiamine- 29.7 19 0.00065 27.8 1.3 43 319-362 1-51 (78)
131 2lhi_A Calmodulin, serine/thre 29.0 17 0.00058 30.4 1.0 36 60-95 2-41 (176)
132 2jn6_A Protein CGL2762, transp 28.8 21 0.00072 27.2 1.4 42 59-110 2-45 (97)
133 2kgr_A Intersectin-1; structur 28.8 20 0.00067 28.3 1.3 49 57-109 2-54 (111)
134 1iuf_A Centromere ABP1 protein 28.4 38 0.0013 28.1 3.1 49 57-111 6-59 (144)
135 1ryj_A Unknown; beta/alpha pro 28.3 49 0.0017 24.5 3.4 48 318-371 4-59 (70)
136 3iz6_M 40S ribosomal protein S 28.0 41 0.0014 29.6 3.3 29 82-113 59-87 (152)
137 1iq3_A Ralbp1-interacting prot 27.7 11 0.00037 30.1 -0.4 50 57-110 10-63 (110)
138 3fwb_A Cell division control p 27.5 32 0.0011 26.6 2.3 53 55-109 9-65 (161)
139 3g1o_A Transcriptional regulat 27.4 11 0.00036 32.4 -0.6 54 58-117 38-92 (255)
140 1wdc_B Scallop myosin; calcium 26.7 44 0.0015 26.0 3.0 52 58-111 7-62 (156)
141 3fia_A Intersectin-1; EH 1 dom 26.1 26 0.00088 29.4 1.6 48 57-108 21-72 (121)
142 3q0w_A HTH-type transcriptiona 26.0 8.5 0.00029 32.6 -1.4 45 68-118 50-94 (236)
143 2l32_A Small archaeal modifier 25.7 39 0.0013 25.8 2.4 42 318-359 2-50 (74)
144 2rn7_A IS629 ORFA; helix, all 25.2 25 0.00086 27.2 1.3 46 60-109 4-51 (108)
145 3on2_A Probable transcriptiona 25.2 23 0.0008 28.1 1.1 46 66-117 16-61 (199)
146 3j04_B Myosin regulatory light 25.2 59 0.002 24.7 3.4 47 63-111 1-51 (143)
147 1l0o_C Sigma factor; bergerat 25.0 15 0.00052 30.9 0.0 44 62-115 198-241 (243)
148 2g7l_A TETR-family transcripti 24.7 19 0.00065 31.8 0.6 56 53-114 9-65 (243)
149 3dcf_A Transcriptional regulat 24.5 11 0.00039 30.5 -0.9 42 68-115 37-78 (218)
150 1j7q_A CAVP, calcium vector pr 24.1 41 0.0014 23.9 2.2 44 59-104 4-51 (86)
151 1l3l_A Transcriptional activat 24.0 22 0.00077 31.1 0.9 49 58-117 169-217 (234)
152 2mys_C Myosin; muscle protein, 23.4 49 0.0017 25.1 2.6 46 62-109 1-50 (149)
153 3i5g_C Myosin catalytic light 23.0 30 0.001 28.4 1.5 44 62-107 2-51 (159)
154 3fiw_A Putative TETR-family tr 22.6 23 0.0008 30.2 0.7 55 55-115 17-72 (211)
155 3gc6_A ECTO-NAD+ glycohydrolas 22.2 49 0.0017 31.3 2.8 39 316-359 162-212 (247)
156 2kl0_A Putative thiamin biosyn 21.8 40 0.0014 25.6 1.8 43 319-363 1-48 (73)
157 3qp6_A CVIR transcriptional re 21.7 39 0.0013 30.7 2.0 51 58-119 193-243 (265)
158 3ktp_B Trinucleotide repeat-co 21.4 31 0.0011 21.8 0.9 11 3-13 1-11 (22)
159 2q1z_A RPOE, ECF SIGE; ECF sig 20.8 12 0.0004 30.7 -1.5 46 63-118 136-181 (184)
No 1
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.82 E-value=4.7e-21 Score=149.85 Aligned_cols=72 Identities=21% Similarity=0.359 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhh
Q 036145 46 TVPGCEERSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRH 122 (375)
Q Consensus 46 s~p~~~~rsp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~ 122 (375)
+.|+.......+|.|+.||++|+.+||..|+.++ ||+..+|.+||++|+ |++++|++||||||+|+||+.+.
T Consensus 8 ~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~rk~~~~ 79 (81)
T 1fjl_A 8 SEPGIALKRKQRRSRTTFSASQLDELERAFERTQ-YPDIYTREELAQRTN----LTEARIQVWFQNRRARLRKQHTS 79 (81)
T ss_dssp ---------CCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccCCCCCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHhhhhhhhccc
Confidence 3344555677899999999999999999999997 999999999999997 99999999999999999998753
No 2
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=3.6e-21 Score=150.19 Aligned_cols=66 Identities=20% Similarity=0.377 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhhH
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQ 124 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~q 124 (375)
+..+|+|+.||++|+.+||.+|+.++ ||+..+|++||++|+ |++++|++||||||+|+|++.++.+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNRR~k~rk~~~~~~ 70 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTR-YPDIFMREEVALKIN----LPESRVQVWFKNRRAKCRQQQQQQQ 70 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHTHHHHTTCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHC----cCHHHhhhhhHHHhHHhhHHHHccC
Confidence 56789999999999999999999997 999999999999997 9999999999999999999877544
No 3
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.81 E-value=3.9e-21 Score=148.91 Aligned_cols=67 Identities=27% Similarity=0.398 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 50 CEERSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 50 ~~~rsp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
.......+|.|+.||++||.+||.+|..++ ||+.++|++||++|+ |++++|++||||||+|+||+..
T Consensus 11 ~~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 11 GEEPQRDKRLRTTITPEQLEILYQKYLLDS-NPTRKMLDHIAHEVG----LKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCCCTTCCSSCCTTTHHHHHHHHHHCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHC----cCHHHhHHHhHHHHHhHhhhcc
Confidence 344567789999999999999999999996 999999999999997 9999999999999999998754
No 4
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=5.8e-21 Score=148.52 Aligned_cols=66 Identities=21% Similarity=0.388 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhhH
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQ 124 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~q 124 (375)
+..+|+|+.||++|+.+||.+|+.++ ||+..+|++||.+|+ |++++|++||||||+|+||+.+..+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINH-NPDAKDLKQLAQKTG----LTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----CCHHHhhHccHHHHHHHHHHHHHHh
Confidence 45689999999999999999999997 999999999999997 9999999999999999999876544
No 5
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.81 E-value=7.2e-21 Score=144.69 Aligned_cols=65 Identities=28% Similarity=0.380 Sum_probs=60.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhhH
Q 036145 55 PEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQ 124 (375)
Q Consensus 55 p~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~q 124 (375)
+++|.|+.||++|+.+||..|..++ ||+..+|.+||.+|+ |++++|++||||||+|+|++.++.+
T Consensus 1 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNRR~k~kk~~~~~~ 65 (68)
T 1zq3_P 1 GPRRTRTTFTSSQIAELEQHFLQGR-YLTAPRLADLSAKLA----LGTAQVKIWFKNRRRRHKIQSDQHK 65 (68)
T ss_dssp CCSCCSCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCCcCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----cCHHHhhHhhHHHHHHHHHHhcccc
Confidence 4689999999999999999999997 999999999999997 9999999999999999999877654
No 6
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=1e-20 Score=147.83 Aligned_cols=66 Identities=24% Similarity=0.366 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhhH
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQ 124 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~q 124 (375)
...+|.|+.||++|+.+||.+|..++ ||+..+|.+||++|+ |++++|++||||||+|+||+.+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTH-YPDVFARERLAAKID----LPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhC----CCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 45689999999999999999999997 999999999999997 9999999999999999999877654
No 7
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=1.6e-20 Score=147.27 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 53 RSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 53 rsp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
....+|.|+.||.+|+.+||.+|..++ ||+..+|.+||++|+ |++++|++||||||+|+||+.+
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQK-YLSLQQMQELSNILN----LSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHHhh
Confidence 456689999999999999999999997 999999999999997 9999999999999999999875
No 8
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-20 Score=146.93 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 52 ERSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 52 ~rsp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
.....+|+|+.||++|+.+||.+|+.++ ||+..+|++||++|+ |++++|++||||||+|+||..+
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQK-YLSTPDRIDLAESLG----LSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhC----CCHHHeeeccHHHHHHhhcccC
Confidence 3456689999999999999999999997 999999999999997 9999999999999999998754
No 9
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=8.5e-21 Score=144.79 Aligned_cols=63 Identities=27% Similarity=0.382 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
...+|+|+.||++|+.+||..|+.++ ||+..+|++||++|+ |++++|++||||||+|+||+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANK-FITKDKRRKISAATS----LSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHC----CCHHHhhHhhHhHHHHhcccCC
Confidence 45689999999999999999999997 999999999999997 9999999999999999998764
No 10
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.4e-20 Score=143.39 Aligned_cols=63 Identities=21% Similarity=0.352 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
...+|+|+.||++|+.+||.+|+.++ ||+..+|++||++|+ |++++|++||||||+|+||+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETK-YPDVGTREQLARKVH----LREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHC----CCHHHeehccccccccccccCC
Confidence 45689999999999999999999997 999999999999997 9999999999999999998754
No 11
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.80 E-value=8.9e-21 Score=141.37 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=52.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhh
Q 036145 56 EPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKL 120 (375)
Q Consensus 56 ~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~ 120 (375)
.+|+|+.||++|+.+||..|..++ ||+..+|.+||++|+ |++++|++||||||+|+||++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQK-YLSLQQMQELSSILN----LSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHhC----CCHHHhhHHhHHhhcchhhcC
Confidence 579999999999999999999997 999999999999997 999999999999999999863
No 12
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=7.2e-21 Score=144.64 Aligned_cols=63 Identities=19% Similarity=0.399 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
...+|+|+.||++|+.+||.+|+.++ ||+..+|.+||++|+ |++++|++||||||+|+||+.+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINN-SPSEEQIKEMADKSG----LPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCS-SCCTTHHHHHHHHHC----CCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHhC----CCHHHHHHHhhhhhHHHhhhcc
Confidence 46689999999999999999999997 999999999999997 9999999999999999999865
No 13
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.80 E-value=1e-20 Score=140.70 Aligned_cols=59 Identities=24% Similarity=0.452 Sum_probs=53.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhh
Q 036145 56 EPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119 (375)
Q Consensus 56 ~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk 119 (375)
.+|+|+.||++|+.+||..|+.++ ||+..+|.+||.+|+ |++++|++||||||+|+||.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENR-YLTERRRQQLSSELG----LNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHC----cCHHHHHHHhhhhccccccC
Confidence 589999999999999999999997 999999999999997 99999999999999999974
No 14
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.80 E-value=1.1e-20 Score=152.40 Aligned_cols=70 Identities=24% Similarity=0.337 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhhHhHhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQNSKQ 128 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~q~~~~ 128 (375)
...+|+|+.||.+|+.+||..|..++ ||+..+|.+||.+|+ |++++|++||||||+|+|++.+++++...
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~~~~~~~~~~ 84 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQK-YLASAERAALARGLK----MTDAQVKTWFQNRRTKWRRQTAEEREAER 84 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHTTT----CCHHHHHHHHHHHHHHHHHHHTCC-----
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHhC----CChhhcccccHhhhhhhhhhhHHHHHHHH
Confidence 34579999999999999999999997 999999999999997 99999999999999999999887765443
No 15
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-20 Score=142.92 Aligned_cols=64 Identities=28% Similarity=0.475 Sum_probs=60.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhhH
Q 036145 56 EPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQ 124 (375)
Q Consensus 56 ~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~q 124 (375)
.+|+|+.||++|+.+||..|..++ ||+.++|++||++|+ |++++|++||||||+|+|++.++.+
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kr~~~~~q 64 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNC-YPGIDILEDLAQKLN----LELDRIQIWFQNRRAKLKRSHRESQ 64 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHCSCCTTC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHC----cCHHHhhHhhHhHHHHHhHhchhcc
Confidence 479999999999999999999997 999999999999997 9999999999999999999887654
No 16
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=9.4e-21 Score=144.01 Aligned_cols=63 Identities=22% Similarity=0.422 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
...+|+|+.||++|+.+||.+|+.++ ||+..+|++||++|+ |++++|++||||||+|+||+.+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANA-YPKDDEFEQLSNLLN----LPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHhC----CCHHHhHHhhHhhhHHHhhccc
Confidence 45689999999999999999999997 999999999999997 9999999999999999999765
No 17
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=1.5e-20 Score=137.93 Aligned_cols=57 Identities=28% Similarity=0.405 Sum_probs=54.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhh
Q 036145 57 PKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKH 118 (375)
Q Consensus 57 ~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KR 118 (375)
+|+|+.||++|+.+||..|..++ ||+..+|.+||.+|+ |++++|++||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQ-YLSIAERAEFSSSLS----LTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHHC----cCHHHhhhhhhHhhhhhcc
Confidence 68999999999999999999997 999999999999997 9999999999999999987
No 18
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.79 E-value=2.5e-20 Score=144.75 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhh
Q 036145 53 RSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHI 123 (375)
Q Consensus 53 rsp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~ 123 (375)
....+|.|+.||.+|+.+||..|..++ ||+..+|.+||.+|+ |++++|++||||||+|+|++....
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQR-YLSAPEREHLASLIR----LTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHhC----CCHHHHHHHhHHhhcchhhhhccc
Confidence 355689999999999999999999997 999999999999997 999999999999999999876643
No 19
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.79 E-value=1.7e-20 Score=140.57 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=55.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhh
Q 036145 56 EPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKL 120 (375)
Q Consensus 56 ~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~ 120 (375)
.+|+|+.||++|+.+||..|..++ ||+..+|.+||.+|+ |++++|++||||||+|+||++
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNK-YISRPRRVELAVMLN----LTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----cCHHHhhHHHHhhhhhhhhhc
Confidence 579999999999999999999997 999999999999997 999999999999999999864
No 20
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.79 E-value=2.7e-20 Score=144.55 Aligned_cols=64 Identities=27% Similarity=0.296 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRH 122 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~ 122 (375)
...+|.|+.||.+|+.+||..|..++ ||+..+|++||.+|+ |++++|++||||||+|+|+..++
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNM-YLTRDRRYEVARLLN----LTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHhhhh
Confidence 45689999999999999999999997 999999999999997 99999999999999999998765
No 21
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.7e-20 Score=143.18 Aligned_cols=63 Identities=27% Similarity=0.298 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
...+|+|+.||++|+.+||.+|+.++ ||+..+|++||++|+ |++++|++||||||+|+||...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQ-YLALPERAELAASLG----LTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHSS----CCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHhC----CCHHHHHHHHHHHhhhhcccCC
Confidence 45689999999999999999999997 999999999999997 9999999999999999998753
No 22
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.79 E-value=2.1e-20 Score=144.08 Aligned_cols=66 Identities=26% Similarity=0.394 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhhH
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQ 124 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~q 124 (375)
...+|+|+.||++|+.+||..|..++ ||+..+|.+||.+|+ |++++|++||||||+|+||...+.+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNK-FITKDKRRRISATTN----LSERQVTIWFQNRRVKEKKVINKLK 70 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTS-CCCHHHHHHHHHHHT----SCSHHHHHHHHHHHHHHTTSSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCC-CcCHHHHHHHHHHHC----CCHHHHHHHHHHHhHHHHHHhcccC
Confidence 35689999999999999999999997 999999999999997 9999999999999999999876543
No 23
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.79 E-value=1.5e-20 Score=141.68 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=58.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhh
Q 036145 55 PEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRH 122 (375)
Q Consensus 55 p~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~ 122 (375)
..+|+|+.||++|+.+||..|+.++ ||+..+|++||.+|+ |++.+|++||||||+|+|++...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~~~ 64 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANP-RPDALMKEQLVEMTG----LSPRVIRVWFQNKRCKDKKRSIM 64 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCS-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHCSSCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHHC----cCHHHHHHHhHHHHHHHhHHhhh
Confidence 3589999999999999999999997 999999999999997 99999999999999999987643
No 24
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.79 E-value=2.5e-20 Score=138.15 Aligned_cols=58 Identities=26% Similarity=0.359 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhh
Q 036145 57 PKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119 (375)
Q Consensus 57 ~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk 119 (375)
+|.|+.||++|+.+||..|..++ ||+..+|.+||++|+ |++.+|++||||||+|+||+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKEN-YVSRPRRCELAAQLN----LPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHC----cCHHHHHHhhHHHHhHhhcc
Confidence 68999999999999999999997 999999999999997 99999999999999999985
No 25
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=3.4e-20 Score=141.46 Aligned_cols=63 Identities=24% Similarity=0.285 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
...+|+|+.||++|+.+||..|+.++ ||+..+|++||++|+ |++++|++||||||+|+|+...
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQK-YLSPPERKRLAKMLQ----LSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHC----CCHHHhhHhhHhhHhhcCCCCC
Confidence 35578999999999999999999997 999999999999997 9999999999999999998764
No 26
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.78 E-value=2.3e-20 Score=142.19 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=58.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhh
Q 036145 56 EPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRH 122 (375)
Q Consensus 56 ~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~ 122 (375)
.+|.|+.||++|+.+||..|..++ ||+..+|.+||.+|+ |++++|++||||||+|+|++.+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNR-YLTRRRRIEIAHALS----LTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCS-SCCTTHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCC-CCCHHHHHHHHHHHC----cCHhhhhHHhHHHHhHHhHhccc
Confidence 478999999999999999999997 999999999999997 99999999999999999998764
No 27
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-20 Score=146.12 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhh
Q 036145 53 RSPEPKPRWNPKPEQIRILESIFNSG----MVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKL 120 (375)
Q Consensus 53 rsp~~R~Rt~FT~eQL~~LE~~F~~~----~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~ 120 (375)
.+..+|.|+.||.+|+.+||++|+.+ + ||+.++|++||++|+ |++++|+|||||||+|+|+..
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~-yp~~~~r~~La~~lg----L~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLG-SVCREKIEAVATELN----VDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCS-HHHHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCC-CcCHHHHHHHHHHhC----CCHHHhhHhHHHHHHHHhhcc
Confidence 45678999999999999999999999 7 899999999999997 999999999999999999853
No 28
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.78 E-value=2.3e-20 Score=141.94 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=59.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhhH
Q 036145 56 EPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQ 124 (375)
Q Consensus 56 ~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~q 124 (375)
.+|+|+.||++|+.+||..|..++ ||+..+|.+||.+|+ |++++|++||||||+|+|++.++.+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kr~~~~~~ 65 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQK-YLSAPEREHLASMIH----LTPTQVKIWFQNHRYKMKRQAKDKA 65 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHhC----CCHHHhHHHhHHHhhhhhhhhhHhh
Confidence 478999999999999999999997 999999999999997 9999999999999999999887543
No 29
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=6.3e-20 Score=147.76 Aligned_cols=68 Identities=24% Similarity=0.420 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh-----------hcCCCCCCceeeccCcchhhhhhhhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQ-----------EYGQVGDANVFYWFQNRKSRSKHKLRH 122 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~-----------~~g~LtE~qVkvWFQNRRAK~KRk~r~ 122 (375)
...+|.|+.||++||.+||..|+.++ ||+.++|++||++|+ .++.|++.+|++||||||+|+||+.+.
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~-yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQ-YPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 45689999999999999999999997 999999999999998 555599999999999999999988765
No 30
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.78 E-value=5.7e-20 Score=145.19 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhh
Q 036145 53 RSPEPKPRWNPKPEQIRILESIFNS----GMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119 (375)
Q Consensus 53 rsp~~R~Rt~FT~eQL~~LE~~F~~----~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk 119 (375)
..+.+|.|+.||.+|+.+||+.|+. ++ ||+..+|++||++|+ |++++|+|||||||+|.|+.
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~-yp~~~~r~~La~~lg----L~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQ-RQDDEVIQRFCQETG----VPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCC-TTTHHHHHHHHHHSC----CCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCC-CcCHHHHHHHHHHhC----CCcccccCCccccCcCCCCC
Confidence 4567899999999999999999999 86 999999999999997 99999999999999999863
No 31
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.78 E-value=3.2e-20 Score=145.83 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
...+|.|+.||.+|+.+||.+|..++ ||+..+|++||++|+ |++++|++||||||+|+||+.+
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNH-YLTRRRRIEMAHALS----LTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhC----CCHHHHHHHhHHhhhhhhhhcc
Confidence 34589999999999999999999997 999999999999997 9999999999999999999765
No 32
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.78 E-value=1.4e-20 Score=142.78 Aligned_cols=64 Identities=22% Similarity=0.386 Sum_probs=59.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhh
Q 036145 55 PEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHI 123 (375)
Q Consensus 55 p~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~ 123 (375)
..+|+|+.||++|+.+||..|..++ ||+..+|.+||.+|+ |++++|++||||||+|+|++.+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNR-YPDMSTREEIAVWTN----LTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCS-SCCTTTTTHHHHHTT----SCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHhHHHHHHhhcc
Confidence 3589999999999999999999997 999999999999997 999999999999999999988753
No 33
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.78 E-value=3.2e-20 Score=137.58 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=50.0
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 59 PRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 59 ~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
+|+.||++|+.+||..|..++ ||+..+|.+||++|+ |++++|++||||||+|+||+.+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTH-YPDVFTREELAMKIG----LTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHC----cCHHHHHHHhhhhhhhhHhhcc
Confidence 689999999999999999997 999999999999997 9999999999999999998764
No 34
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.78 E-value=5.1e-20 Score=140.82 Aligned_cols=66 Identities=21% Similarity=0.368 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhh
Q 036145 52 ERSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRH 122 (375)
Q Consensus 52 ~rsp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~ 122 (375)
.....+|.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||+.+.
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTH-YPDVYAREQLAMRTD----LTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhC----CCHHHHHHHhHHHHHHHHHHHhh
Confidence 3456689999999999999999999997 999999999999997 99999999999999999998765
No 35
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.78 E-value=3.9e-20 Score=146.92 Aligned_cols=64 Identities=22% Similarity=0.255 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 53 RSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 53 rsp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
....+|.|+.||.+|+.+||..|+.++ ||+..+|++||++|+ |++++|++||||||+|+||+.+
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~vWFqNRR~k~kk~~k 88 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNR-YLTRRRRIEIAHALS----LTERQIKIWFQNRRMKWKKEHK 88 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhC----cCHHHhhHHhHHHHHHhHhhcC
Confidence 345689999999999999999999997 999999999999997 9999999999999999998753
No 36
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=7.8e-20 Score=140.12 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=56.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 57 PKPRWNPKPEQIRILESIFNS-GMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 57 ~R~Rt~FT~eQL~~LE~~F~~-~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
.+.|+.||++|+.+||..|.. ++ ||+..+|++||++|+ |++++|++||||||+|+||+.+
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNK-HPDPTTLCLIAAEAG----LTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHHHccCC-CCCHHHHHHHHHHHC----cCHHHhhHHhHHHHHHHhhhcc
Confidence 588999999999999999996 86 999999999999997 9999999999999999999764
No 37
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=6.9e-20 Score=148.05 Aligned_cols=64 Identities=28% Similarity=0.372 Sum_probs=56.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRH 122 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~ 122 (375)
...+|+|+.||.+|+.+||..|..++ ||+..+|++||++|+ |++++|++||||||+|+||+.++
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNK-YLSRARRVEIAATLE----LNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhC----CCHHHhHHHHHHHhHHHhHHhcc
Confidence 56689999999999999999999997 999999999999997 99999999999999999998764
No 38
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5.8e-20 Score=142.39 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRH 122 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~ 122 (375)
.++.+.|++||++||.+||..|..++ ||+..+|++||++|+ |++++|++||||||+|+||+.+.
T Consensus 6 ~~~~~~R~~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 6 SGASIYKNKKSHEQLSALKGSFCRNQ-FPGQSEVEHLTKVTG----LSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHHSS-SCCSHHHHHHHHHHC----CCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCCCCccCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----CChHHhhHHhHHHhHHHHHhccc
Confidence 45567899999999999999999997 999999999999997 99999999999999999997764
No 39
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=7.6e-20 Score=141.87 Aligned_cols=62 Identities=26% Similarity=0.465 Sum_probs=57.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhh
Q 036145 57 PKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHI 123 (375)
Q Consensus 57 ~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~ 123 (375)
+++|.+||++||.+||..|..++ ||+..+|.+||++|+ |++++|++||||||+|+|++.+..
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNP-LPLDEELDRLRSETK----MTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCCccCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhC----CCHHHhhHhhHHHHHHHHHhhhcc
Confidence 57788899999999999999997 999999999999997 999999999999999999987643
No 40
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.76 E-value=1.3e-19 Score=131.94 Aligned_cols=57 Identities=30% Similarity=0.384 Sum_probs=54.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhh
Q 036145 56 EPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSK 117 (375)
Q Consensus 56 ~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~K 117 (375)
.+|.|+.||++|+.+||..|..++ ||+..+|.+||.+|+ |++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQR-YLSAPERDQLASVLK----LTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----cCHHHHHHhhHHhhccCC
Confidence 478999999999999999999997 999999999999997 999999999999999986
No 41
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=1.2e-19 Score=139.75 Aligned_cols=60 Identities=22% Similarity=0.356 Sum_probs=56.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 57 PKPRWNPKPEQIRILESIFNS-GMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 57 ~R~Rt~FT~eQL~~LE~~F~~-~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
++.|+.||++|+.+||..|.. ++ ||+..+|.+||++|+ |++++|++||||||+|+||+.+
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~-yp~~~~r~~LA~~~~----l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNK-HPDPTTLCLIAAEAG----LTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHhcc
Confidence 588999999999999999995 86 999999999999997 9999999999999999999764
No 42
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=2e-19 Score=146.00 Aligned_cols=61 Identities=23% Similarity=0.383 Sum_probs=55.2
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhhH
Q 036145 59 PRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQ 124 (375)
Q Consensus 59 ~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~q 124 (375)
+...||.+||.+||+.|..++ ||+..+|.+||.+|+ |+|++|+|||||||+|+|++++..+
T Consensus 14 k~k~~t~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~lg----Lte~qVkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLNSS-VLTDEELNRLRAQTK----LTRREIDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred hhccCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhC----cChHHCeecccccchHHHHHHHHhh
Confidence 344899999999999999997 999999999999997 9999999999999999998775443
No 43
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.76 E-value=1.5e-19 Score=143.34 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhh
Q 036145 51 EERSPEPKPRWNPKPEQIRILESIFNS-----GMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119 (375)
Q Consensus 51 ~~rsp~~R~Rt~FT~eQL~~LE~~F~~-----~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk 119 (375)
......+|.|+.||.+|+++|| .|.. ++ ||+..+|++||++|+ |+|++|+|||||||+|.|+.
T Consensus 12 ~~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~-yp~~~~r~~La~~lg----L~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 12 SSGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQ-KHDDVAVEQFCAETG----VRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp CCCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCC-SSTTHHHHHHHHHSC----CCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCC-CCCHHHHHHHHHHhC----cCcCcccccccccccCCCCC
Confidence 3445678999999999999999 8999 86 999999999999997 99999999999999999863
No 44
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.76 E-value=1.7e-19 Score=138.38 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=58.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhh
Q 036145 55 PEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRH 122 (375)
Q Consensus 55 p~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~ 122 (375)
..++.|+.||++|+.+||..|..++ ||+..+|++||.+|+ |++++|++||||||+|+||+...
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQ-FPHDSEIIRLMKITG----LTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----cCHHHeeeCChhHhHHHHhhCcC
Confidence 3478999999999999999999997 999999999999997 99999999999999999987653
No 45
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.75 E-value=1.3e-19 Score=134.13 Aligned_cols=59 Identities=24% Similarity=0.387 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSK 117 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~K 117 (375)
...+|+|+.||.+|+.+||..|..++ ||+..+|.+||.+|+ |++.+|++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~-yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQ-SLNSKEKEEVAKKCG----ITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCC-CcCHHHHHHHHHHHC----cCHHHHHHHHHHHHhccC
Confidence 45689999999999999999999996 999999999999997 999999999999999986
No 46
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.9e-19 Score=142.52 Aligned_cols=63 Identities=21% Similarity=0.392 Sum_probs=56.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhhH
Q 036145 57 PKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQ 124 (375)
Q Consensus 57 ~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~q 124 (375)
++++..||++||.+||..|..++ ||+..+|++||++|+ |++++|++||||||+|+|++.+...
T Consensus 14 p~k~k~~t~~Ql~~Le~~F~~~~-yp~~~~r~~La~~~~----l~~~qV~vWFqNRR~k~r~~~~~~~ 76 (89)
T 2dmp_A 14 PQKFKEKTQGQVKILEDSFLKSS-FPTQAELDRLRVETK----LSRREIDSWFSERRKLRDSMEQAVL 76 (89)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHTSCSCCC
T ss_pred ccccccCCHHHHHHHHHHHccCC-CCCHHHHHHHHHHhC----CCHHhccHhhHhHHHHHHHHhHhhh
Confidence 45556699999999999999997 999999999999997 9999999999999999998776543
No 47
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.8e-19 Score=148.37 Aligned_cols=69 Identities=20% Similarity=0.436 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhh-------------cC----CCCCCceeeccCcchhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQE-------------YG----QVGDANVFYWFQNRKSRS 116 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~-------------~g----~LtE~qVkvWFQNRRAK~ 116 (375)
...+|.|+.|+++|+.+||+.|+.++ ||+.++|++||++|+. +| .|+|.+|+|||||||+|+
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~-yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQK-NPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 34589999999999999999999997 9999999999999953 23 699999999999999999
Q ss_pred hhhhhhh
Q 036145 117 KHKLRHI 123 (375)
Q Consensus 117 KRk~r~~ 123 (375)
|++.+..
T Consensus 83 kr~~~~~ 89 (102)
T 2da6_A 83 AFRQKLA 89 (102)
T ss_dssp HHHHHHH
T ss_pred HHhhHhh
Confidence 9886643
No 48
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.75 E-value=3e-19 Score=136.96 Aligned_cols=65 Identities=22% Similarity=0.359 Sum_probs=59.8
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhhHh
Q 036145 56 EPKPRWNPKPEQIRILESIF---NSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQN 125 (375)
Q Consensus 56 ~~R~Rt~FT~eQL~~LE~~F---~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~q~ 125 (375)
++|+|+.||++|+.+||..| ..++ ||+.++|.+||.+|+ |++.+|++||||||+|+|++....+.
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~-yP~~~~r~~La~~~~----L~~~qV~~WFqNrR~r~kk~~~~~~~ 68 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKCG----ITVSQVSNWFGNKRIRYKKNIGKFQE 68 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHCTTTTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCC-CcCHHHHHHHHHHHC----cCHHHHHHHHHHHHhhcccccccccc
Confidence 47999999999999999999 8886 999999999999997 99999999999999999998776543
No 49
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.75 E-value=2.1e-19 Score=131.99 Aligned_cols=54 Identities=26% Similarity=0.315 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhh
Q 036145 61 WNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119 (375)
Q Consensus 61 t~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk 119 (375)
+.||++|+.+||+.|..++ ||+..+|.+||++|+ |++++|++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQK-YLASAERAALAKALR----MTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcC-CcCHHHHHHHHHHhC----cCHHHhhHhhHHhhhhhccc
Confidence 5799999999999999997 999999999999997 99999999999999999986
No 50
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.74 E-value=5.6e-19 Score=139.26 Aligned_cols=65 Identities=22% Similarity=0.359 Sum_probs=58.6
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhhHh
Q 036145 56 EPKPRWNPKPEQIRILESIF---NSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQN 125 (375)
Q Consensus 56 ~~R~Rt~FT~eQL~~LE~~F---~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~q~ 125 (375)
.+|+|+.||++|+.+||..| ..++ ||+.++|++||++|+ |++++|++||||||+|+|++......
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~-yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~r~kk~~~~~~~ 68 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKCG----ITVSQVSNWFGNKRIRYKKNIGKFQE 68 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTSC-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHCGGGGHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHhhhccccccc
Confidence 37999999999999999999 7886 999999999999997 99999999999999999998766543
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=2.5e-19 Score=134.03 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=56.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhh
Q 036145 55 PEPKPRWNPKPEQIRILESIF---NSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119 (375)
Q Consensus 55 p~~R~Rt~FT~eQL~~LE~~F---~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk 119 (375)
.++|.|+.||++|+.+||..| ..++ ||+.++|++||++|+ |++.+|++||||||+|+||+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~~----L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKCG----ITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHhccC
Confidence 568999999999999999999 8886 999999999999997 99999999999999999874
No 52
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.74 E-value=3.3e-19 Score=146.86 Aligned_cols=69 Identities=19% Similarity=0.367 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhc--------------CC---CCCCceeeccCcchhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEY--------------GQ---VGDANVFYWFQNRKSRS 116 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~--------------g~---LtE~qVkvWFQNRRAK~ 116 (375)
+..+|.|+.||++||.+||..|+.++ ||+..+|++||++++.. .+ |++.+|++||||||+|+
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~-yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQK-NPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 45689999999999999999999997 99999999999995532 34 99999999999999999
Q ss_pred hhhhhhh
Q 036145 117 KHKLRHI 123 (375)
Q Consensus 117 KRk~r~~ 123 (375)
|++.+..
T Consensus 86 k~k~~~~ 92 (99)
T 1lfb_A 86 AFRHKLA 92 (99)
T ss_dssp SCCC---
T ss_pred HHhchhh
Confidence 8887543
No 53
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=5.3e-19 Score=140.48 Aligned_cols=59 Identities=19% Similarity=0.304 Sum_probs=55.1
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 58 KPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 58 R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
+.|.+||++||.+||+.|..++ ||+.++|++||++|+ |+|++|++||||||+|.|+...
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~-YPs~~er~~LA~~tg----Lte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQ-WARREDYQKLEQITG----LPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHC----cCHHHhhHHhHhhHHHHHHHHH
Confidence 5788899999999999999997 999999999999997 9999999999999999998654
No 54
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.73 E-value=6.8e-19 Score=142.21 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 53 RSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 53 rsp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
....+|+|+.||++|+.+||..|..++ ||+..+|++||.+|+ |++++|++||||||+|+||+..
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQ-WPSPEEYDKLAKESG----LARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----CCHHHeeecchhhhhHhhhhcc
Confidence 345579999999999999999999997 999999999999997 9999999999999999998653
No 55
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=1.6e-18 Score=132.94 Aligned_cols=63 Identities=22% Similarity=0.214 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNS---GMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~---~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
...+|+|+.|+++|+.+||..|.. ++ ||+.++|++||++|+ |++++|++||||||+|.|+...
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~~----L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHP-YPTEDEKKQIAAQTN----LTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHC----cCHHHHHHHhHHHHhhcccccc
Confidence 456899999999999999999987 75 999999999999997 9999999999999999998754
No 56
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.71 E-value=1.6e-18 Score=128.15 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=53.0
Q ss_pred CCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhh
Q 036145 59 PRWNPKPEQIRILESIFNS---GMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119 (375)
Q Consensus 59 ~Rt~FT~eQL~~LE~~F~~---~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk 119 (375)
+|++||++|+.+||..|.. ++ ||+.++|++||++|+ |++++|++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~g----l~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNTS----LSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCC-CcCHHHHHHHHHHHC----cCHHHHHHHHHHHHcccccC
Confidence 5889999999999999999 86 999999999999997 99999999999999999974
No 57
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.2e-18 Score=131.17 Aligned_cols=56 Identities=14% Similarity=0.301 Sum_probs=51.8
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhh
Q 036145 59 PRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119 (375)
Q Consensus 59 ~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk 119 (375)
.+..++++|+.+||++|..++ ||+..+|.+||++|+ |++++|++||||||||+|+.
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYALNA-QPSAEELSKIADSVN----LPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHTCSCS
T ss_pred CCCCccHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----cChhhcCcchhcccCCCCCC
Confidence 456678999999999999996 999999999999997 99999999999999999873
No 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.70 E-value=2.9e-18 Score=135.88 Aligned_cols=61 Identities=21% Similarity=0.353 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhh
Q 036145 53 RSPEPKPRWNPKPEQIRILESIFNS---GMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKH 118 (375)
Q Consensus 53 rsp~~R~Rt~FT~eQL~~LE~~F~~---~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KR 118 (375)
....+|+|+.||++|+.+||+.|.. ++ ||+.++|++||++|+ |++++|++||||||+|+|.
T Consensus 24 ~~~~~k~r~~ft~~q~~~Le~~f~~~~~~~-yP~~~~r~~La~~~g----L~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 24 KSTKPYRGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNTS----LSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp EESSCCTTCCCCHHHHHHHHHHHHHTTSSC-CCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHhCCCC-CcCHHHHHHHHHHHC----cCHHHHHHHHHHHHhhccC
Confidence 3556788999999999999999999 86 999999999999997 9999999999999999884
No 59
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.70 E-value=2.4e-18 Score=150.54 Aligned_cols=61 Identities=26% Similarity=0.382 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk 119 (375)
...+|+|+.||.+|+.+||+.|..++ ||+..+|++||++|+ |++++|++||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQ-KPTSEDITLIAEQLN----MEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHC----CChHHhhHhhHHhhhhhhcc
Confidence 46689999999999999999999997 999999999999997 99999999999999999986
No 60
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.70 E-value=2.5e-18 Score=148.77 Aligned_cols=62 Identities=27% Similarity=0.362 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKL 120 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~ 120 (375)
.+.+|+|+.||.+|+.+||+.|..++ ||+..+|.+||++|+ |++++|++||||||+|+||++
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~k 146 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHS-KPSSQEIMRMAEELN----LEKEVVRVWFCNRRQREKRVK 146 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----CChhhchhhhHhhhhhhhccC
Confidence 45688999999999999999999997 999999999999997 999999999999999999863
No 61
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.70 E-value=1.8e-18 Score=152.54 Aligned_cols=66 Identities=26% Similarity=0.298 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhh
Q 036145 52 ERSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRH 122 (375)
Q Consensus 52 ~rsp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~ 122 (375)
...+.+|+|+.||.+|+.+||++|..++ ||+..+|.+||++|+ |++++|++||||||+|+||+.+.
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKCP-KPSAHEITGLADSLQ----LEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTBSCC-
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHC----CChhhhhhhhHHhhHHHhhccCC
Confidence 3456689999999999999999999997 999999999999997 99999999999999999998754
No 62
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=1.2e-18 Score=135.20 Aligned_cols=61 Identities=21% Similarity=0.295 Sum_probs=56.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhh
Q 036145 55 PEPKPRWNPKPEQIRILESIF-NSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKL 120 (375)
Q Consensus 55 p~~R~Rt~FT~eQL~~LE~~F-~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~ 120 (375)
-..+.|.+++.+|+.+||+.| ..++ ||+..+|++||++|+ |+|++|++||||||+|+|+..
T Consensus 7 ~g~k~r~r~~~~ql~~LE~~F~~~~~-yp~~~~r~~LA~~l~----l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 7 GGIKDSPVNKVEPNDTLEKVFVSVTK-YPDEKRLKGLSKQLD----WSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCCCSCSCSTTHHHHHHHHTCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----CChhhcchhhhhcccCCCCCC
Confidence 457888899999999999999 8886 999999999999997 999999999999999999753
No 63
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.69 E-value=6.3e-18 Score=146.15 Aligned_cols=61 Identities=28% Similarity=0.419 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhh
Q 036145 53 RSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKH 118 (375)
Q Consensus 53 rsp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KR 118 (375)
..+.+|+|+.||.+|+.+||+.|..++ ||+..+|.+||++|+ |++++|++||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNP-LPTGQEITEMAKELN----YDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHC----CCHHHhHHHHHHHHhccCC
Confidence 456689999999999999999999997 999999999999997 9999999999999999997
No 64
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.68 E-value=7.9e-18 Score=133.17 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSG--MVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRH 122 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~--~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~ 122 (375)
+..+|+|+.|+.+|+.+||+.|..+ ..||+.++|++||++|+ |+++||++||||||+|.|++..+
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~g----Ls~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTN----LSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHC----cCHHHhhHHhhhhHhhhcHHHHH
Confidence 4568999999999999999999884 23999999999999997 99999999999999999886554
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.68 E-value=6.5e-18 Score=133.25 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=54.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhh
Q 036145 57 PKPRWNPKPEQIRILESIFNS---GMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRH 122 (375)
Q Consensus 57 ~R~Rt~FT~eQL~~LE~~F~~---~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~ 122 (375)
+++|++||.+|+.+||..|.. ++ ||+.++|.+||.+|+ |++++|++||||||+|+|+....
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~-yP~~~~r~~La~~~g----Lt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNTS----LSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSC-CCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHHHC----CCHHHcccccHHHHccccccccC
Confidence 466777999999999999999 86 999999999999997 99999999999999999987543
No 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.67 E-value=3.9e-18 Score=132.33 Aligned_cols=56 Identities=25% Similarity=0.347 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhh
Q 036145 62 NPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRH 122 (375)
Q Consensus 62 ~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~ 122 (375)
..|++|+.+||+.|..++ ||+..+|.+||++|+ |++++|++||||||+|+||+.+.
T Consensus 10 ~~t~~ql~~LE~~F~~~~-yp~~~~r~~LA~~l~----Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQK-YLSAPERAHLAKNLK----LTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHSCCSSSS
T ss_pred cCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhC----CChhheeecchhhhhhhhhhhhh
Confidence 468999999999999997 999999999999997 99999999999999999998754
No 67
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.66 E-value=1.4e-17 Score=145.13 Aligned_cols=63 Identities=29% Similarity=0.326 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
...+|+|+.||++|+.+||+.|+.++ ||+.++|++||++|+ |++++|++||||||+|.|+...
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~la~~l~----L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENK-RPSKELQITISQQLG----LELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHC----cCHHHhhhcChhhhccccccCC
Confidence 35589999999999999999999996 999999999999997 9999999999999999998754
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.65 E-value=2.3e-17 Score=143.85 Aligned_cols=61 Identities=25% Similarity=0.380 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk 119 (375)
...+|+|+.||++|+.+||+.|..++ ||+..+|.+||.+|+ |++++|++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yps~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSP-KPSLQQITHIANQLG----LEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCS-CCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCC-CCCHHHHHHHHHHcC----CChhheeeccccccccccCC
Confidence 46688999999999999999999997 999999999999997 99999999999999999984
No 69
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.64 E-value=2.4e-17 Score=128.37 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhh
Q 036145 63 PKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKL 120 (375)
Q Consensus 63 FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~ 120 (375)
-|++||.+||+.|..++ ||+..+|.+||..|+ |++++|++||||||+|+|+-.
T Consensus 11 ~~~~Ql~~LE~~F~~~~-YPs~~er~eLA~~tg----Lt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQ-FPDDAEVYRLIEVTG----LARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGG-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhC----cCHHHhhHhcccchhhhhccC
Confidence 47999999999999997 999999999999997 999999999999999999754
No 70
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=3.1e-17 Score=129.41 Aligned_cols=60 Identities=30% Similarity=0.541 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNS-GMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKH 118 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~-~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KR 118 (375)
+.++|.||.||.+||.+||..|+. ++ ||+.++|++||.+|+ |++++|++||||||.--|.
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~-yPd~~~r~~La~~tG----L~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGL-YPDQEAIHTLSAQLD----LPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCS-CCCHHHHHHHHHHSC----CCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhC----CCHHHHHHhhccceeeecC
Confidence 467999999999999999999999 96 999999999999997 9999999999999987654
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=2.2e-17 Score=127.26 Aligned_cols=50 Identities=22% Similarity=0.446 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhh
Q 036145 65 PEQIRILESIFN-SGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119 (375)
Q Consensus 65 ~eQL~~LE~~F~-~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk 119 (375)
++|+.+||+.|. .+ +||+..+|.+||++|+ |+|+||++||||||+|+|+-
T Consensus 9 ~~~~~~LE~~F~~~~-~yp~~~~r~~LA~~l~----LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAIT-KHPDEKRLEGLSKQLD----WDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTC-SSCCHHHHHHHHHHHC----SCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcC-CCcCHHHHHHHHHHhC----CCHHHHHHHHHHHHhccCCC
Confidence 458999999995 56 4999999999999997 99999999999999999863
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=2.1e-16 Score=120.75 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHh---cCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhhHh
Q 036145 62 NPKPEQIRILESIFN---SGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQN 125 (375)
Q Consensus 62 ~FT~eQL~~LE~~F~---~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~q~ 125 (375)
+|+++|+.+||..|. .++ ||+.++|.+||.+|+ |++++|++||||||+|.|++..+..+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~p-yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHP-YPSEEQKKQLAQDTG----LTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHSCC-----
T ss_pred cCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHhC----cCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 799999999999999 886 999999999999997 99999999999999999998776554
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.53 E-value=7.1e-16 Score=140.37 Aligned_cols=65 Identities=22% Similarity=0.455 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhh-------------cCC----CCCCceeeccCcchhhh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQE-------------YGQ----VGDANVFYWFQNRKSRS 116 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~-------------~g~----LtE~qVkvWFQNRRAK~ 116 (375)
++.||.|+.|+++|+.+||+.|+.++ ||+..+|++||+.|+. +|- |+|.+|++||||||+|+
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~-yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQK-NPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHC-CCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 45689999999999999999999997 9999999999999972 222 89999999999999999
Q ss_pred hhh
Q 036145 117 KHK 119 (375)
Q Consensus 117 KRk 119 (375)
|.+
T Consensus 192 k~~ 194 (194)
T 1ic8_A 192 AFR 194 (194)
T ss_dssp C--
T ss_pred hcC
Confidence 864
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.45 E-value=2e-14 Score=133.71 Aligned_cols=64 Identities=20% Similarity=0.420 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhc-----------------CCCCCCceeeccCcchhh
Q 036145 53 RSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEY-----------------GQVGDANVFYWFQNRKSR 115 (375)
Q Consensus 53 rsp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~-----------------g~LtE~qVkvWFQNRRAK 115 (375)
.++.||.|+.|+++|+.+||+.|+.++ ||+..+|++||+.|+.. ..|+|.+|++||||||++
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~-YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQK-NPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 456689999999999999999999996 99999999999999831 248999999999999998
Q ss_pred hh
Q 036145 116 SK 117 (375)
Q Consensus 116 ~K 117 (375)
+.
T Consensus 218 ~~ 219 (221)
T 2h8r_A 218 EA 219 (221)
T ss_dssp CC
T ss_pred hh
Confidence 64
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4.3e-14 Score=111.68 Aligned_cols=47 Identities=23% Similarity=0.476 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhh
Q 036145 64 KPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSR 115 (375)
Q Consensus 64 T~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK 115 (375)
=++|+.+||.+|..++ +|+.++|++||+.|+ |++++|++||||||++
T Consensus 13 ~k~ql~~Lk~yF~~n~-~Ps~eei~~LA~~lg----L~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 13 YKDHMSVLKAYYAMNM-EPNSDELLKISIAVG----LPQEFVKEWFEQRKVY 59 (71)
T ss_dssp STHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCCHHHHHHHHHHhC----CCHHHHHHHHhhcccc
Confidence 4689999999999997 899999999999997 9999999999999974
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.38 E-value=5.8e-14 Score=131.69 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=52.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhh
Q 036145 57 PKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSK 117 (375)
Q Consensus 57 ~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~K 117 (375)
++.|..++.+|+++||+.|+.++ ||++.+|++||++|+ |+++||++||||||+|.|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~-yp~~~~~~~la~~~~----l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQ-SLNSKEKEEVAKKCG----ITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCC-CcCHHHHHHHHHHHC----cCHHHhhHhhhhcccccC
Confidence 46788899999999999999997 999999999999997 999999999999999986
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.28 E-value=5.9e-13 Score=108.76 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhh
Q 036145 61 WNPKPEQIRILESIFNS---GMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHI 123 (375)
Q Consensus 61 t~FT~eQL~~LE~~F~~---~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~ 123 (375)
.-|+++++++|++-|.. ++ ||+.++|++||++++ |+++||++||||||.|.|+...+.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~np-YPs~~ek~~LA~~tg----Lt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNA-YPSEQEKALLSQQTH----LSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGG-SCCHHHHHHHHHHSS----SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHhhhHHHHh
Confidence 45889999999999988 65 999999999999997 999999999999999998875543
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.71 E-value=1.8e-09 Score=75.68 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.2
Q ss_pred CceeeccCcchhhhhhhhhhhHh
Q 036145 103 ANVFYWFQNRKSRSKHKLRHIQN 125 (375)
Q Consensus 103 ~qVkvWFQNRRAK~KRk~r~~q~ 125 (375)
+||+|||||||||+||+.++.+.
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 58999999999999999987553
No 79
>3fcg_A F1 capsule-anchoring protein; beta barrel, beta strand swapping, cell membrane, cell outer membrane, cell projection, fimbrium, membrane; 2.85A {Yersinia pestis}
Probab=85.46 E-value=0.25 Score=40.23 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.5
Q ss_pred cceEEEEecc---eeeeeccccchhhhh
Q 036145 316 AARSTVFIND---VAFEVVAGPFNVREA 340 (375)
Q Consensus 316 ~a~~tVfIn~---vafeV~~GpfnVr~~ 340 (375)
.|+++|++|| -...||.|||.+...
T Consensus 26 ~A~V~v~qnG~~iy~~~VppGpF~I~dl 53 (90)
T 3fcg_A 26 QARVEVLRDGYTVSNELVPSGPFELANL 53 (90)
T ss_dssp SEEEEEESSSCEEEEEEECSEEEEECCC
T ss_pred CcEEEEEECCEEEEEeEeCCCCeEEcCC
Confidence 5899999999 457899999999854
No 80
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.73 E-value=0.64 Score=36.66 Aligned_cols=38 Identities=18% Similarity=0.403 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccC
Q 036145 68 IRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQ 110 (375)
Q Consensus 68 L~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQ 110 (375)
.+.|+++|...+ -+..+...+|..+-. |+-.+|+-||-
T Consensus 18 ~e~L~~Yy~~hk-~L~EeDl~~L~~ksk----ms~qqvkdwFa 55 (70)
T 2ys9_A 18 IQPLERYWAAHQ-QLRETDIPQLSQASR----LSTQQVLDWFD 55 (70)
T ss_dssp CHHHHHHHHHTC-CCCTTHHHHHHHHTT----CCHHHHHHHHH
T ss_pred chHHHHHHHHhc-ccchhhHHHHHHHhC----CCHHHHHHHHH
Confidence 478999999997 699999998888876 99999999995
No 81
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=72.52 E-value=1.4 Score=33.86 Aligned_cols=49 Identities=12% Similarity=0.201 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhh
Q 036145 62 NPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKL 120 (375)
Q Consensus 62 ~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~ 120 (375)
.+++.|.++|.-.|..+. . .++||+.|+ |++..|+.+...=|.|.|+..
T Consensus 37 ~L~~~~r~vl~l~~~~g~--s----~~eIA~~lg----is~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW--S----TAQIATDLG----IAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC--C----HHHHHHHHT----SCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--C----HHHHHHHHC----cCHHHHHHHHHHHHHHHHHHH
Confidence 478889999998887773 2 357999997 999999977655555544443
No 82
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=71.04 E-value=0.059 Score=46.26 Aligned_cols=30 Identities=3% Similarity=-0.226 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCH
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPR 84 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~ 84 (375)
.+.+|+|+.||.+||++|+..|+.++ ||.+
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~-~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANP-VEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCC-CCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCC-Cccc
Confidence 46689999999999999999999997 7874
No 83
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=65.98 E-value=2.4 Score=30.19 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=33.2
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccC
Q 036145 59 PRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQ 110 (375)
Q Consensus 59 ~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQ 110 (375)
+|..|++|....+..++..+. .......+||++++ |+...|+.|..
T Consensus 2 ~r~~ys~efK~~~~~~~~~g~--s~~~~~~~vA~~~g----Is~~tl~~W~~ 47 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRNDN--DCKGNQRATARKYN----IHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHHCT--TTTTCHHHHHHHTT----SCHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHHHcCC--CcchHHHHHHHHHC----cCHHHHHHHHH
Confidence 456899999888877776652 31112457899987 99999999954
No 84
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=63.97 E-value=1.7 Score=28.65 Aligned_cols=43 Identities=9% Similarity=0.318 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchh
Q 036145 62 NPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKS 114 (375)
Q Consensus 62 ~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRA 114 (375)
.+++++++.+...+..+. + ..+||+.|+ ++...|+.|+.....
T Consensus 5 ~~~~~~~~~i~~l~~~g~---s---~~~ia~~lg----vs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKGH---P---RQQLAIIFG----IGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTTC---C---HHHHHHTTS----CCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcCC---C---HHHHHHHHC----CCHHHHHHHHHHccc
Confidence 466777777777776652 2 357888886 999999999965443
No 85
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=63.68 E-value=3.9 Score=32.62 Aligned_cols=50 Identities=6% Similarity=0.056 Sum_probs=36.9
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhh
Q 036145 58 KPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSR 115 (375)
Q Consensus 58 R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK 115 (375)
++|..+|.|+...+-..+..+. .... .+||++++ |+...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g-~~~~---~~~A~~~g----vs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENP-DLRK---GEIARRFN----IPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCT-TSCH---HHHHHHHT----CCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCC-CCcH---HHHHHHhC----CCHHHHHHHHhchhhh
Confidence 5788999999977777774442 3443 36888886 9999999998766553
No 86
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=63.46 E-value=2 Score=30.48 Aligned_cols=47 Identities=9% Similarity=-0.077 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhh
Q 036145 62 NPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKH 118 (375)
Q Consensus 62 ~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KR 118 (375)
.+++.|.++|+-.|..+. . ..+||+.|+ +++..|+.|...=|.|.|+
T Consensus 15 ~L~~~~r~il~l~~~~g~--s----~~eIA~~lg----is~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL--S----YADAAAVCG----CPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC--C----HHHHHHHHT----SCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcCC--C----HHHHHHHHC----cCHHHHHHHHHHHHHHHHH
Confidence 468999999999887773 2 357999997 9999998776544444443
No 87
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=60.71 E-value=2.6 Score=33.54 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 62 NPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 62 ~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
.+++.|.++|. .|-.+. . .++||+.|+ +++..|+.+.+.=|.|.|+..+
T Consensus 109 ~L~~~~r~v~~-~~~~g~--s----~~EIA~~lg----is~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRGY--S----YREIATILS----KNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HSCHHHHHHHH-HHTTTC--C----HHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcCC--C----HHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888 666663 2 357999997 9999998776554544444443
No 88
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=60.61 E-value=5.5 Score=30.47 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=31.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeecc
Q 036145 57 PKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWF 109 (375)
Q Consensus 57 ~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWF 109 (375)
++.|..|++++....-+.+..+. + ..+||++|+ |+...|+.|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g~---s---~~~iA~~~g----Is~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDGE---S---KASVARDIG----VPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHTC---C---HHHHHHHHT----CCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCCC---C---HHHHHHHHC----cCHHHHHHHH
Confidence 45677899999665555666552 2 457899997 9999999995
No 89
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=59.60 E-value=4.1 Score=26.09 Aligned_cols=40 Identities=3% Similarity=0.084 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCc
Q 036145 62 NPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQN 111 (375)
Q Consensus 62 ~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQN 111 (375)
.+++++...+...+..+. + ..+||+.|+ ++...|+.|...
T Consensus 5 ~l~~~~~~~i~~~~~~g~---s---~~~IA~~lg----is~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLNV---S---LHEMSRKIS----RSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTTC---C---HHHHHHHHT----CCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcCC---C---HHHHHHHHC----cCHHHHHHHHhh
Confidence 567888766666676663 2 457999997 999999999743
No 90
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=59.22 E-value=2.1 Score=32.51 Aligned_cols=53 Identities=23% Similarity=0.312 Sum_probs=37.3
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 58 KPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 58 R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
+.--.+|+.|.++|+-+ ..+. . .++||++|+ +++..|+.+..+=|.|.+...+
T Consensus 17 ~~~~~Lt~~e~~vl~l~-~~g~--s----~~eIA~~l~----is~~tV~~~l~r~~~kL~~~~~ 69 (82)
T 1je8_A 17 RDVNQLTPRERDILKLI-AQGL--P----NKMIARRLD----ITESTVKVHVKHMLKKMKLKSR 69 (82)
T ss_dssp CCGGGSCHHHHHHHHHH-TTTC--C----HHHHHHHHT----SCHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHccCCHHHHHHHHHH-HcCC--C----HHHHHHHHC----cCHHHHHHHHHHHHHHHcCCCH
Confidence 33346899999999995 4442 2 358999997 9999999877655555544433
No 91
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=58.05 E-value=3.9 Score=32.73 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=35.9
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhh
Q 036145 58 KPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSK 117 (375)
Q Consensus 58 R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~K 117 (375)
.+.-.+|+.|+++|+-++ .+. . .++||++|+ |++..|+.+..+=+.|..
T Consensus 30 ~~~~~Lt~re~~Vl~l~~-~G~--s----~~EIA~~L~----iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 30 YGDKRLSPKESEVLRLFA-EGF--L----VTEIAKKLN----RSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp CSSSSCCHHHHHHHHHHH-HTC--C----HHHHHHHHT----SCHHHHHHHHHHHHHHHT
T ss_pred cccCCCCHHHHHHHHHHH-cCC--C----HHHHHHHHC----cCHHHHHHHHHHHHHHHC
Confidence 335679999999998865 553 2 268999997 999999987665444443
No 92
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=54.74 E-value=4.7 Score=30.53 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHhhcCCCCCCceeecc
Q 036145 61 WNPKPEQIRILESIFNSG----MVNPPRDEIRRIRAQLQEYGQVGDANVFYWF 109 (375)
Q Consensus 61 t~FT~eQL~~LE~~F~~~----~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWF 109 (375)
|.++++|++.|+++|..- ..+.+.++...+-+.++ +++..+..+|
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g----~~~~~~~~i~ 49 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK----LPILELSHIW 49 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHS----SCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC----CCHHHHHHHH
Confidence 889999999999999863 23566666555555553 7777766544
No 93
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=53.19 E-value=4 Score=29.10 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=35.4
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhh
Q 036145 58 KPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKH 118 (375)
Q Consensus 58 R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KR 118 (375)
+.-..+++.|.++|.-+ ..+ + + ..+||+.|+ +++..|+.+..+=+.|.+.
T Consensus 7 ~~~~~L~~~e~~il~~~-~~g--~-s---~~eIA~~l~----is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 7 QSKPLLTKREREVFELL-VQD--K-T---TKEIASELF----ISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp -CCCCCCHHHHHHHHHH-TTT--C-C---HHHHHHHHT----SCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHH-HcC--C-C---HHHHHHHHC----CCHHHHHHHHHHHHHHHCC
Confidence 34456899999999995 444 2 2 357999997 9999999877654544443
No 94
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=51.72 E-value=7.8 Score=30.87 Aligned_cols=47 Identities=6% Similarity=0.152 Sum_probs=32.7
Q ss_pred cceEEEEecceeeeeccccchhh---hhcC--CceEEEecCCcceecccccc
Q 036145 316 AARSTVFINDVAFEVVAGPFNVR---EAFG--EDAVLINSSGQPVLTNEWGV 362 (375)
Q Consensus 316 ~a~~tVfIn~vafeV~~GpfnVr---~~FG--~davLihssG~pv~tne~Gv 362 (375)
...|+|.|||.++|++.|+..|+ +.+| .+.|.|=-.|+.|+-++|.=
T Consensus 18 ~~~M~I~vNGe~~el~~~~~Tv~dLL~~L~~~~~~vaVavNg~iV~~~~~~~ 69 (87)
T 1tyg_B 18 GGRHMLQLNGKDVKWKKDTGTIQDLLASYQLENKIVIVERNKEIIGKERYHE 69 (87)
T ss_dssp ----CEEETTEEECCSSSCCBHHHHHHHTTCTTSCCEEEETTEEECGGGTTT
T ss_pred CcceEEEECCEEEECCCCCCcHHHHHHHhCCCCCCEEEEECCEECChhhcCC
Confidence 35788999999999998844554 4455 44566777889999888863
No 95
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=51.40 E-value=21 Score=29.23 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=27.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHh
Q 036145 57 PKPRWNPKPEQIRILESIFNS----GMVNPPRDEIRRIRAQLQ 95 (375)
Q Consensus 57 ~R~Rt~FT~eQL~~LE~~F~~----~~~yPs~~eR~qLA~~L~ 95 (375)
..+|..+|++|++.|.++|.. +..+.+..+-..+-+.|+
T Consensus 4 ~~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg 46 (153)
T 3i5g_B 4 APRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLG 46 (153)
T ss_dssp ---CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTT
T ss_pred cccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcC
Confidence 456778999999999999974 234688877666666554
No 96
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=50.20 E-value=3 Score=32.51 Aligned_cols=47 Identities=9% Similarity=0.190 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhh
Q 036145 62 NPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119 (375)
Q Consensus 62 ~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk 119 (375)
.+++.|.++|+-+ ..+. . .++||+.|+ +++..|+.+..+=|.|.+..
T Consensus 27 ~Lt~~e~~vl~l~-~~g~--s----~~eIA~~l~----is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 27 GLTDQERTLLGLL-SEGL--T----NKQIADRMF----LAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCCHHHHHHHHHH-HTTC--C----HHHHHHHHT----CCHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHH-HcCC--C----HHHHHHHHC----cCHHHHHHHHHHHHHHHcCC
Confidence 5899999999997 4442 2 258999997 99999997766555444443
No 97
>3fip_A Outer membrane usher protein PAPC; beta barrel, protein translocase, cell membrane, cell outer fimbrium, transmembrane, transport; 3.15A {Escherichia coli} PDB: 2vqi_A*
Probab=50.09 E-value=6.3 Score=40.06 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=22.3
Q ss_pred cceEEEEecce---eeeeccccchhhhhc
Q 036145 316 AARSTVFINDV---AFEVVAGPFNVREAF 341 (375)
Q Consensus 316 ~a~~tVfIn~v---afeV~~GpfnVr~~F 341 (375)
.|+++|++||. ...||+|||.+....
T Consensus 128 ~A~V~v~qnG~~iy~t~VppGpF~i~dl~ 156 (493)
T 3fip_A 128 NARVVVSQQGRVLYDSMVPAGPFSIQDLD 156 (493)
T ss_dssp SCEEEEEETTEEEEEEECCSEEECCCCSC
T ss_pred CcEEEEEECCEEEEEEEeCCCCeEecCCC
Confidence 58999999994 568999999998764
No 98
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=49.91 E-value=3.1 Score=31.85 Aligned_cols=48 Identities=17% Similarity=0.091 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhh
Q 036145 61 WNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119 (375)
Q Consensus 61 t~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk 119 (375)
-.+++.|.++|.-+ ..+. .. ++||+.|+ +++..|+.+..+=|.|.+..
T Consensus 28 ~~Lt~~e~~vl~l~-~~g~--s~----~eIA~~l~----is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 28 EMLTEREMEILLLI-AKGY--SN----QEIASASH----ITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp GGCCSHHHHHHHHH-HTTC--CT----THHHHHHT----CCHHHHHHHHHHHHHHTTCC
T ss_pred hcCCHHHHHHHHHH-HcCC--CH----HHHHHHHC----cCHHHHHHHHHHHHHHHCCC
Confidence 45899999999885 4442 33 37999997 99999998776555555443
No 99
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=49.75 E-value=13 Score=28.94 Aligned_cols=52 Identities=8% Similarity=-0.008 Sum_probs=38.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHhhcCCCCCCceeeccC
Q 036145 57 PKPRWNPKPEQIRILESIFNSG----MVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQ 110 (375)
Q Consensus 57 ~R~Rt~FT~eQL~~LE~~F~~~----~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQ 110 (375)
.+....++.+|+++|.++|..- ..+.+.++..++-+.|+ ..+++..|+.+|+
T Consensus 24 ~~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg--~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 24 EQRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLG--YMPNEVELEVIIQ 79 (100)
T ss_dssp TCSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHT--CCCCTTTHHHHHH
T ss_pred hcccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhC--CCCCHHHHHHHHH
Confidence 3556789999999999999752 34688888777777776 2478888876663
No 100
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=48.77 E-value=15 Score=26.53 Aligned_cols=41 Identities=12% Similarity=0.181 Sum_probs=31.2
Q ss_pred eEEEEe-cceeeeeccc--cchhhhhc----CCceEEEecCCcceecc
Q 036145 318 RSTVFI-NDVAFEVVAG--PFNVREAF----GEDAVLINSSGQPVLTN 358 (375)
Q Consensus 318 ~~tVfI-n~vafeV~~G--pfnVr~~F----G~davLihssG~pv~tn 358 (375)
.|+|++ ||..+|++.| +.|+-+.+ +.++|.+.-.|+.++.+
T Consensus 2 ~i~i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~ 49 (73)
T 2kmm_A 2 EVMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLS 49 (73)
T ss_dssp CEEEECTTCCEEEECTTCBHHHHHHHHCSHHHHTEEEEEETTEECCTT
T ss_pred eEEEEcCCCCEEEcCCCCcHHHHHHHHhhccccceEEEEECCEEeCCC
Confidence 477888 8999999986 56776555 36788888889887765
No 101
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=48.26 E-value=4.9 Score=28.94 Aligned_cols=46 Identities=11% Similarity=0.185 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHH----hcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhh
Q 036145 62 NPKPEQIRILESIF----NSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSK 117 (375)
Q Consensus 62 ~FT~eQL~~LE~~F----~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~K 117 (375)
.+++.|.++|.-.| ..+. + -++||+.|+ +++..|+.+...=+.|.|
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~---s---~~eIA~~lg----is~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY---T---LEEVGKQFD----VTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC---C---HHHHHHHHT----CCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCCCCC---C---HHHHHHHHC----cCHHHHHHHHHHHHHHHH
Confidence 47899999999999 3442 2 357999997 999999976544444433
No 102
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=46.65 E-value=7.1 Score=31.81 Aligned_cols=50 Identities=10% Similarity=0.112 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhh
Q 036145 62 NPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 121 (375)
Q Consensus 62 ~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r 121 (375)
.+++.|.++|.-.|..+. . ..+||+.|+ +++..|+.|...=|.|.|+...
T Consensus 22 ~L~~~~r~vl~l~y~~g~--s----~~EIA~~lg----iS~~tV~~~l~ra~~kLr~~l~ 71 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY--S----LAEIADEFG----VSRQAVYDNIKRTEKILETYEM 71 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC--C----HHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--C----HHHHHHHHC----cCHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999988874 2 357999997 9999999998776666665443
No 103
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=46.27 E-value=3 Score=30.33 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhh
Q 036145 63 PKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119 (375)
Q Consensus 63 FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk 119 (375)
+++.|.++|+-+ ..+. . ..+||+.|+ +++..|+.+..+=|.|.|..
T Consensus 17 L~~~e~~vl~l~-~~g~--s----~~eIA~~l~----is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 17 LSERERQVLSAV-VAGL--P----NKSIAYDLD----ISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HCHHHHHHHHHH-TTTC--C----HHHHHHHTT----SCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHH-HcCC--C----HHHHHHHHC----cCHHHHHHHHHHHHHHHcCC
Confidence 688999999884 4442 2 257999997 99999987766555544443
No 104
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=45.72 E-value=4.5 Score=33.52 Aligned_cols=50 Identities=8% Similarity=0.100 Sum_probs=34.5
Q ss_pred CCCCCHHH-HHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhh
Q 036145 60 RWNPKPEQ-IRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSR 115 (375)
Q Consensus 60 Rt~FT~eQ-L~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK 115 (375)
|..-+.++ |+...++|.+.- | ......+||++.+ ++...|++.|.||..=
T Consensus 25 r~~~~r~~Il~aa~~lf~~~G-~-~~~tv~~IA~~ag----vs~~t~Y~~F~sK~~L 75 (215)
T 2qko_A 25 QNPERRAALVNAAIEVLAREG-A-RGLTFRAVDVEAN----VPKGTASNYFPSRDDL 75 (215)
T ss_dssp --CHHHHHHHHHHHHHHHHTC-T-TTCCHHHHHHHSS----STTTCHHHHCSCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhC-h-hhccHHHHHHHcC----CCcchHHHhCCCHHHH
Confidence 34444443 456677888874 4 3445678999887 9999999999996543
No 105
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=44.25 E-value=8.2 Score=31.25 Aligned_cols=51 Identities=12% Similarity=0.112 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhh
Q 036145 62 NPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRH 122 (375)
Q Consensus 62 ~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~ 122 (375)
.+++.|.++|.-.|..+. . ..+||+.|+ +++..|+.+...=|.|.|+..+.
T Consensus 25 ~L~~~~r~vl~l~~~~g~--s----~~EIA~~lg----iS~~tV~~~l~ra~~kLr~~l~~ 75 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY--S----LSEIADTFN----VSRQAVYDNIRRTGDLVEDYEKK 75 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC--C----HHHHHHHTT----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--C----HHHHHHHHC----cCHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999988874 2 357899997 99999998887666666655444
No 106
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=43.75 E-value=6 Score=34.88 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=35.1
Q ss_pred CCCCCCCCCCCCCCHHHH-HHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchh
Q 036145 51 EERSPEPKPRWNPKPEQI-RILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKS 114 (375)
Q Consensus 51 ~~rsp~~R~Rt~FT~eQL-~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRA 114 (375)
...++++++|...|.++| +.-.++|.+.- | ..-...+||++++ ++..-|+..|.||..
T Consensus 17 ~~~~~~~~~~~~~tr~~Il~aA~~l~~~~G-~-~~~s~~~IA~~aG----vs~~tlY~hF~~K~~ 75 (241)
T 2hxi_A 17 LYFQGHMAGRRRWSTEQILDAAAELLLAGD-A-ETFSVRKLAASLG----TDSSSLYRHFRNKTE 75 (241)
T ss_dssp -----------CCCHHHHHHHHHHHHSSSS-C-CCCCHHHHHHHTT----SCHHHHHHHTSSHHH
T ss_pred ccCCCCCCcchhhHHHHHHHHHHHHHHhcC-c-ccCCHHHHHHHhC----cCHHHHHHHcCCHHH
Confidence 334455566667777764 56677787774 4 3344567999997 999999999999654
No 107
>3rfz_B Outer membrane usher protein, type 1 fimbrial SYN; beta-barrel, pilus assembly, outer-membrane, cell adhesion-T protein-chaperone complex; 2.80A {Escherichia coli} PDB: 3ohn_A 1zdv_A
Probab=42.43 E-value=8.6 Score=41.47 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=22.3
Q ss_pred cceEEEEecc---eeeeeccccchhhhhc
Q 036145 316 AARSTVFIND---VAFEVVAGPFNVREAF 341 (375)
Q Consensus 316 ~a~~tVfIn~---vafeV~~GpfnVr~~F 341 (375)
.|+++|++|| -...||.|||.+....
T Consensus 263 nA~V~V~QnG~~iy~t~VppGpF~I~Dl~ 291 (843)
T 3rfz_B 263 TAQVTIKQNGYDIYNSTVPPGPFTINDIY 291 (843)
T ss_dssp SEEEEEEETTEEEEEEEECSEEEEECCCC
T ss_pred CcEEEEEECCEEEEEEEeCCCceEecCCC
Confidence 5899999999 4578999999998663
No 108
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=42.02 E-value=7.2 Score=28.44 Aligned_cols=46 Identities=9% Similarity=0.015 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhh
Q 036145 62 NPKPEQIRILESIFN----SGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSK 117 (375)
Q Consensus 62 ~FT~eQL~~LE~~F~----~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~K 117 (375)
.+++.|.++|+..|. .+. + -++||+.|+ +++..|+.|...=+.|.|
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~---s---~~eIA~~l~----is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREH---T---LEEVGAYFG----VTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC---C---HHHHHHHHT----CCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCC---C---HHHHHHHHC----CCHHHHHHHHHHHHHHHH
Confidence 478999999999996 442 2 357999997 999999976544333333
No 109
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=39.45 E-value=8.3 Score=32.62 Aligned_cols=48 Identities=13% Similarity=0.172 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhh
Q 036145 62 NPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119 (375)
Q Consensus 62 ~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk 119 (375)
.+++.|.++|+-.|..+. . .++||+.|+ +++..|+.+...=|.|.|+.
T Consensus 187 ~L~~~~r~vl~l~~~~g~--s----~~EIA~~lg----is~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEEL--P----AKEVAKILE----TSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCHHHHHHHHHHHTSCC--C----HHHHHHHTT----SCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCC--C----HHHHHHHhC----CCHHHHHHHHHHHHHHHHHH
Confidence 467888888888887763 2 357899987 99999987765555554443
No 110
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=39.01 E-value=8 Score=29.46 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHhhcCCCCCCceeecc
Q 036145 61 WNPKPEQIRILESIFNS----GMVNPPRDEIRRIRAQLQEYGQVGDANVFYWF 109 (375)
Q Consensus 61 t~FT~eQL~~LE~~F~~----~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWF 109 (375)
|.++++|++.|+++|.. +..+.+.++...+-+.+ ++++..++.+|
T Consensus 2 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~~i~ 50 (95)
T 1c07_A 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKT----GLPSTLLAHIW 50 (95)
T ss_dssp CSSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTT----TCCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHc----CCCHHHHHHHH
Confidence 77899999999999964 22356766555444443 37777776555
No 111
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=37.15 E-value=8.3 Score=29.29 Aligned_cols=48 Identities=8% Similarity=0.129 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhh
Q 036145 62 NPKPEQIRILESIFN----SGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119 (375)
Q Consensus 62 ~FT~eQL~~LE~~F~----~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk 119 (375)
.+++.|.++|...|. .+. + -++||+.|+ +++..|+.+...=|.|.|+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~---s---~~EIA~~lg----is~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK---T---LEEVGQYFN----VTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC---C---HHHHHHHHT----CCHHHHHHHHHHHHHHHBTT
T ss_pred hCCHHHHHHHHHHHccCCCCCC---C---HHHHHHHHC----CCHHHHHHHHHHHHHHHHHH
Confidence 468899999999986 442 2 357999997 99999998765544444443
No 112
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=36.84 E-value=8.3 Score=31.83 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhh
Q 036145 63 PKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKL 120 (375)
Q Consensus 63 FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~ 120 (375)
+++.|.++|+-.|-.+. + -++||+.|+ +++..|+.+...=|.|.|+..
T Consensus 141 L~~~~r~vl~l~~~~g~--s----~~EIA~~lg----is~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLRELDGL--S----YEEIAAIMD----CPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHTTCC--C----HHHHHHHTT----SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcCC--C----HHHHHHHHC----CCHHHHHHHHHHHHHHHHHHH
Confidence 56777788887776663 2 257899997 999999987765555555544
No 113
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=36.06 E-value=2.7 Score=36.11 Aligned_cols=44 Identities=14% Similarity=0.253 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhh
Q 036145 68 IRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSK 117 (375)
Q Consensus 68 L~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~K 117 (375)
|+...++|.+.- | ......+||++.+ ++..-|+..|.||..=..
T Consensus 52 l~aA~~lf~~~G-~-~~~t~~~IA~~aG----vs~~t~Y~~F~sKe~Ll~ 95 (245)
T 3aqt_A 52 ITSARTLMAERG-V-DNVGIAEITEGAN----IGTGTFYNYFPDREQLLQ 95 (245)
T ss_dssp HHHHHHHHHHHC-G-GGCCHHHHHHHTT----SCGGGGGGTCSSHHHHHH
T ss_pred HHHHHHHHHhcC-c-ccCcHHHHHHHhC----CChHHHHHHcCCHHHHHH
Confidence 445567777763 4 2334568999987 999999999999765443
No 114
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=35.82 E-value=5.8 Score=27.20 Aligned_cols=40 Identities=13% Similarity=0.328 Sum_probs=30.0
Q ss_pred CCCC--HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccC
Q 036145 61 WNPK--PEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQ 110 (375)
Q Consensus 61 t~FT--~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQ 110 (375)
+.++ +++.+.+...+..+. + ..+||+.|+ ++...|+.|..
T Consensus 12 ~~l~~~~~~~~~i~~l~~~g~---s---~~eIA~~lg----is~~TV~~~l~ 53 (55)
T 2x48_A 12 YYVESEDDLVSVAHELAKMGY---T---VQQIANALG----VSERKVRRYLE 53 (55)
T ss_dssp EEECSHHHHHHHHHHHHHTTC---C---HHHHHHHHT----SCHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHcCC---C---HHHHHHHHC----cCHHHHHHHHH
Confidence 3567 888888887777663 2 357999997 99999988864
No 115
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=35.10 E-value=9.9 Score=33.44 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=36.4
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhh
Q 036145 58 KPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKH 118 (375)
Q Consensus 58 R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KR 118 (375)
.+...+|+.|+++|.-++ .+. . -++||+.|+ |+++.|+....|=|.|..-
T Consensus 171 ~~~~~Lt~~e~~vl~~~~-~g~--s----~~eIa~~l~----is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 171 NPKQMLSPREMLCLVWAS-KGK--T----ASVTANLTG----INARTVQHYLDKARAKLDA 220 (236)
T ss_dssp CGGGSCCHHHHHHHHHHH-TTC--C----HHHHHHHHC----CCHHHHHHHHHHHHHHHTC
T ss_pred CCcCCCCHHHHHHHHHHH-cCC--C----HHHHHHHHC----cCHHHHHHHHHHHHHHhCC
Confidence 345679999999998864 553 2 257999997 9999999877655554443
No 116
>3f6g_B Alpha-isopropylmalate synthase; licmsc, allosteric regulation, feedback inhibition, selectivity, specificity, transferase; 2.00A {Leptospira interrogans} PDB: 3f6h_A
Probab=35.01 E-value=18 Score=30.26 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=29.8
Q ss_pred cceEEEEecceeeeecc---ccch-----hhhhcCC----ceEEEecC
Q 036145 316 AARSTVFINDVAFEVVA---GPFN-----VREAFGE----DAVLINSS 351 (375)
Q Consensus 316 ~a~~tVfIn~vafeV~~---Gpfn-----Vr~~FG~----davLihss 351 (375)
.+++++-++|..++... ||+| +|.++|. ++-|++++
T Consensus 19 ~a~v~l~~~g~~~~~~a~GnGPVdA~~~Al~~~~~~~~~~~~~L~dY~ 66 (127)
T 3f6g_B 19 HAQIELEYQGKIHKEISEGDGGYDAFMNALTKITNRLGISIPKLIDYE 66 (127)
T ss_dssp EEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHTCCCCEEEEEE
T ss_pred EEEEEEEECCEEEEEEEEccCHHHHHHHHHHHHhCccccCceEEEEEE
Confidence 57888889998888766 9999 7888887 78888764
No 117
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=34.52 E-value=8.7 Score=32.82 Aligned_cols=40 Identities=23% Similarity=0.502 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhhHhH
Q 036145 68 IRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQNS 126 (375)
Q Consensus 68 L~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~q~~ 126 (375)
++++.-+|+.|+ ||..+ .-++-+ -|||-|||+++++...-
T Consensus 15 vRiIkiLyQSNP-yP~pe---------------GTRqaR---RNRRRRWR~RQrQI~~i 54 (115)
T 2x7l_M 15 VRLIKFLYQSNP-PPNPE---------------GTRQAR---RNRRRRWRERQRQIHSI 54 (115)
T ss_dssp HHHHHHHHHSSC-CCCCC---------------CCTTTH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCC-CCCCC---------------Cchhhh---HhHHHHHHHHHHHHHHH
Confidence 466777899997 89863 112221 38999999999988753
No 118
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=34.06 E-value=20 Score=28.52 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=32.3
Q ss_pred CCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHhhcCCCCCCceeecc
Q 036145 59 PRWNPKPEQIRILESIFNS---GMVNPPRDEIRRIRAQLQEYGQVGDANVFYWF 109 (375)
Q Consensus 59 ~Rt~FT~eQL~~LE~~F~~---~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWF 109 (375)
-.|.++++++..++++|.. +..+.+.++...+-+.+ ++++..+...|
T Consensus 5 ~~w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~----gl~~~el~~i~ 54 (106)
T 1eh2_A 5 SPWAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNS----KLPVDILGRVW 54 (106)
T ss_dssp -CCSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTT----TCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHc----CCCHHHHHHHH
Confidence 3588999999999999976 33457776555444443 38877777444
No 119
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=33.68 E-value=18 Score=28.62 Aligned_cols=39 Identities=23% Similarity=0.530 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhhHh
Q 036145 68 IRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQN 125 (375)
Q Consensus 68 L~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~q~ 125 (375)
++++.-+|+.|+ ||+.+--.+ |. -|||-|+|+++++...
T Consensus 18 vRiIkiLyQSNP-~P~p~GTrq-aR-----------------RNRRRRWR~RQrQI~~ 56 (72)
T 3lph_A 18 VRLIKFLYQSNP-PPNPEGTRQ-AR-----------------RNRRRRWRERQRQIHS 56 (72)
T ss_dssp HHHHHHHHHTCC-CCCCCSCHH-HH-----------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCC-CCCCCCchH-HH-----------------HHHHHHHHHHHHHHHH
Confidence 466777899997 888642111 11 2899999999888764
No 120
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=33.00 E-value=13 Score=29.01 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=31.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCc
Q 036145 57 PKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQN 111 (375)
Q Consensus 57 ~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQN 111 (375)
......+|+.|+++|.-++ .+. . .++||++|+ |+++.|+....+
T Consensus 24 ~~~~~~Lt~rE~~Vl~l~~-~G~--s----~~eIA~~L~----iS~~TV~~~~~~ 67 (90)
T 3ulq_B 24 QKEQDVLTPRECLILQEVE-KGF--T----NQEIADALH----LSKRSIEYSLTS 67 (90)
T ss_dssp -----CCCHHHHHHHHHHH-TTC--C----HHHHHHHHT----CCHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHH-cCC--C----HHHHHHHHC----cCHHHHHHHHHH
Confidence 4556779999999999887 552 2 368999997 999999865443
No 121
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=32.48 E-value=8.5 Score=26.65 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhh
Q 036145 66 EQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKH 118 (375)
Q Consensus 66 eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KR 118 (375)
.|.++|+- +..+. .. ++||+.|+ +++..|+.+..+=+.|.+.
T Consensus 2 re~~vl~l-~~~g~--s~----~eIA~~l~----is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 2 RERQVLKL-IDEGY--TN----HGISEKLH----ISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHHH-HHTSC--CS----HHHHHHTC----SCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHH-HHcCC--CH----HHHHHHhC----CCHHHHHHHHHHHHHHHCC
Confidence 47788888 55552 33 47999997 9999999876655544444
No 122
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=31.82 E-value=10 Score=31.99 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhh
Q 036145 68 IRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSR 115 (375)
Q Consensus 68 L~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK 115 (375)
|+...++|.+.- | ......+||++.+ ++...|++.|.||-.=
T Consensus 49 l~aA~~l~~~~G-~-~~~tv~~IA~~AG----vs~~t~Y~~F~sKe~L 90 (229)
T 3bni_A 49 LDACADLLDEVG-Y-DALSTRAVALRAD----VPIGSVYRFFGNKRQM 90 (229)
T ss_dssp HHHHHHHHHHHC-T-TTCCHHHHHHHHT----CCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHhcC-h-hhccHHHHHHHHC----CCchhHHHHcCCHHHH
Confidence 344556777764 3 3345678999997 9999999999997543
No 123
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=31.79 E-value=12 Score=33.48 Aligned_cols=49 Identities=22% Similarity=0.136 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhh
Q 036145 60 RWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119 (375)
Q Consensus 60 Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk 119 (375)
.-.+++.|.++|.-.+ .+. . -++||+.|+ +++..|++...+=|.|.|..
T Consensus 195 ~~~L~~~erevl~L~~-~G~--s----~~EIA~~L~----iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 195 RNILSEREKEILRCIR-KGL--S----SKEIAATLY----ISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TTSSCHHHHHHHHHHH-TTC--C----HHHHHHHHT----CCHHHHHHHHHHHHHHTTCS
T ss_pred HccCCHHHHHHHHHHH-cCC--C----HHHHHHHHC----cCHHHHHHHHHHHHHHHcCC
Confidence 3579999999999975 552 2 357999997 99999997666555555544
No 124
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.58 E-value=25 Score=25.74 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=37.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCc-eeeccCcchh
Q 036145 54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDAN-VFYWFQNRKS 114 (375)
Q Consensus 54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~q-VkvWFQNRRA 114 (375)
.++|+..-.+|+|..+++++.|..- +. .=..||+.|. +-+..+ |.+|+.++|.
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~---gk--~w~~Ia~~l~---~rt~~~~v~~Yy~~Kk~ 59 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQH---PK--NFGLIASYLE---RKSVPDCVLYYYLTKKN 59 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHS---TT--CHHHHHHHCT---TSCHHHHHHHHHHHTCC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHh---CC--CHHHHHHHcC---CCCHHHHHHHHHHhcCC
Confidence 3456778899999999999999985 43 2356787765 334444 5678776653
No 125
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=31.11 E-value=8.8 Score=32.38 Aligned_cols=44 Identities=2% Similarity=0.124 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhh
Q 036145 67 QIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRS 116 (375)
Q Consensus 67 QL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~ 116 (375)
=|+...++|.+.- |- .....+||++.+ ++..-|+..|.||..=.
T Consensus 35 Il~aA~~lf~~~G-~~-~~t~~~IA~~Ag----vs~~t~Y~~F~sKe~Ll 78 (230)
T 2iai_A 35 LLSVAVQVFIERG-YD-GTSMEHLSKAAG----ISKSSIYHHVTGKEELL 78 (230)
T ss_dssp HHHHHHHHHHHHC-TT-TCCHHHHHHHHT----SCHHHHTTTCSSHHHHH
T ss_pred HHHHHHHHHHHcC-cc-ccCHHHHHHHHC----CChhHHHHhCCCHHHHH
Confidence 4677788888874 43 345678999997 99999999999876443
No 126
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=30.77 E-value=25 Score=27.60 Aligned_cols=41 Identities=2% Similarity=0.055 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCc
Q 036145 61 WNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQN 111 (375)
Q Consensus 61 t~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQN 111 (375)
..++.++...+...+..+. + ..+||+.|+ ++...|+.|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G~---s---~~~ia~~lg----is~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNV---S---LHEMSRKIS----RSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTC---C---HHHHHHHHT----CCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcCC---C---HHHHHHHHC----cCHHHHHHHHHc
Confidence 5688999888888887763 2 357899997 999999999864
No 127
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=29.94 E-value=29 Score=30.33 Aligned_cols=53 Identities=9% Similarity=0.185 Sum_probs=34.3
Q ss_pred CCCCCCCCCHHHH-HHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchh
Q 036145 56 EPKPRWNPKPEQI-RILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKS 114 (375)
Q Consensus 56 ~~R~Rt~FT~eQL-~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRA 114 (375)
++++|...|.++| +.-.++|.+.- |- .-...+||++++ ++..-++..|.||..
T Consensus 9 ~r~~~~~~~r~~Il~aA~~l~~~~G-~~-~~s~~~IA~~aG----vs~~tlY~hF~~K~~ 62 (237)
T 2hxo_A 9 PERRQEPLSRERIVGAAVELLDTVG-ER-GLTFRALAERLA----TGPGAIYWHITGKAE 62 (237)
T ss_dssp -------CCHHHHHHHHHHHHHHTT-TT-TCCHHHHHHHHT----SCGGGGGGTCCCHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHHhcC-cc-cCCHHHHHHHHC----CChHHHHHhcCCHHH
Confidence 3455666777764 55667787774 43 345568999997 999999999999643
No 128
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=29.88 E-value=13 Score=30.51 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhh
Q 036145 68 IRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSK 117 (375)
Q Consensus 68 L~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~K 117 (375)
|+...++|.+.- .......+||++.+ ++..-|++.|.||-.=..
T Consensus 36 l~aa~~l~~~~G--~~~~ti~~IA~~ag----vs~~t~Y~~F~sK~~Ll~ 79 (212)
T 2np3_A 36 LTAARVCFAERG--FDATSLRRIAETAG----VDQSLVHHFYGTKENLFL 79 (212)
T ss_dssp HHHHHHHC---------------------------------CCC-CHHHH
T ss_pred HHHHHHHHHHcC--cccccHHHHHHHcC----CCHHHHHHHhCCHHHHHH
Confidence 566777888874 44456778999887 999999999999865433
No 129
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=29.75 E-value=9.6 Score=28.26 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=29.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHhhcCCCCCCceeecc
Q 036145 53 RSPEPKPRWNPKPEQIRILESIFNSG----MVNPPRDEIRRIRAQLQEYGQVGDANVFYWF 109 (375)
Q Consensus 53 rsp~~R~Rt~FT~eQL~~LE~~F~~~----~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWF 109 (375)
+.+.+..-..+++++++.|+.+|..- ..+.+.++...+.+.|+ +++..|+.+|
T Consensus 11 ~~~~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g----~~~~~~~~~~ 67 (91)
T 2pmy_A 11 RENLYFQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELR----VRPADAEAVF 67 (91)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTT----CCHHHHHHHH
T ss_pred CccHHHHhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcC----cCHHHHHHHH
Confidence 34445555678999999999999742 23567666555555443 6655555444
No 130
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=29.70 E-value=19 Score=27.78 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=31.1
Q ss_pred EEEEecceeeeec--cccchhhh---hcCCc---eEEEecCCcceecccccc
Q 036145 319 STVFINDVAFEVV--AGPFNVRE---AFGED---AVLINSSGQPVLTNEWGV 362 (375)
Q Consensus 319 ~tVfIn~vafeV~--~GpfnVr~---~FG~d---avLihssG~pv~tne~Gv 362 (375)
|+|.|||.++|++ .| ..|.+ .+|-+ .|.|=-.|+.||-++|.-
T Consensus 1 M~I~vNGe~~e~~~~~~-~Tl~~LL~~l~~~~~~~vAVavNg~iVpr~~~~~ 51 (78)
T 2k5p_A 1 MNLTVNGKPSTVDGAES-LNVTELLSALKVAQAEYVTVELNGEVLEREAFDA 51 (78)
T ss_dssp CEEEETTEEEECSSCSC-EEHHHHHHHHTCSCTTTCCEEETTEECCTTHHHH
T ss_pred CEEEECCEEEEcCCCCC-CcHHHHHHHcCCCCCCcEEEEECCEECChHHcCc
Confidence 5789999999998 43 56654 45633 445556789999998863
No 131
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=28.97 E-value=17 Score=30.41 Aligned_cols=36 Identities=19% Similarity=0.092 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHh
Q 036145 60 RWNPKPEQIRILESIFNSG----MVNPPRDEIRRIRAQLQ 95 (375)
Q Consensus 60 Rt~FT~eQL~~LE~~F~~~----~~yPs~~eR~qLA~~L~ 95 (375)
+..+|++|+++|+++|..- ..+.+.++-..+-+.|+
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg 41 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLG 41 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcC
Confidence 5689999999999999742 23678777666666665
No 132
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=28.83 E-value=21 Score=27.16 Aligned_cols=42 Identities=19% Similarity=0.341 Sum_probs=30.2
Q ss_pred CCCCCCHHHHHHHHHHHh-c-CCCCCCHHHHHHHHHHHhhcCCCCCCceeeccC
Q 036145 59 PRWNPKPEQIRILESIFN-S-GMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQ 110 (375)
Q Consensus 59 ~Rt~FT~eQL~~LE~~F~-~-~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQ 110 (375)
+|..||+++....-..+. . +. ...+||++++ |+...|+.|..
T Consensus 2 ~r~~ys~e~k~~~v~~~~~~~g~------s~~~ia~~~g----Is~~tl~rW~~ 45 (97)
T 2jn6_A 2 PTKTYSEEFKRDAVALYENSDGA------SLQQIANDLG----INRVTLKNWII 45 (97)
T ss_dssp CCCCCCHHHHHHHHHHHTTGGGS------CHHHHHHHHT----SCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCC------hHHHHHHHHC----cCHHHHHHHHH
Confidence 356799998866655553 3 32 2457899987 99999999974
No 133
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=28.82 E-value=20 Score=28.32 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=32.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHhhcCCCCCCceeecc
Q 036145 57 PKPRWNPKPEQIRILESIFNSGM----VNPPRDEIRRIRAQLQEYGQVGDANVFYWF 109 (375)
Q Consensus 57 ~R~Rt~FT~eQL~~LE~~F~~~~----~yPs~~eR~qLA~~L~~~g~LtE~qVkvWF 109 (375)
+-.-|.+++++++.|+++|..-. .+.+.++..+ .|. ..++++..|..+|
T Consensus 2 ~~~~w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~---~l~-~~~~~~~~~~~i~ 54 (111)
T 2kgr_A 2 PVAEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQART---ILM-QSSLPQAQLASIW 54 (111)
T ss_dssp CSCCSSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHH---HHH-TTCCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHH---HHH-hCCCCHHHHHHHH
Confidence 44679999999999999997532 2455554444 443 2346766666554
No 134
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=28.35 E-value=38 Score=28.10 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=35.8
Q ss_pred CCCCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHH----HHhhcCCCCCCceeeccCc
Q 036145 57 PKPRWNPKPEQIRILESIF-NSGMVNPPRDEIRRIRA----QLQEYGQVGDANVFYWFQN 111 (375)
Q Consensus 57 ~R~Rt~FT~eQL~~LE~~F-~~~~~yPs~~eR~qLA~----~L~~~g~LtE~qVkvWFQN 111 (375)
+++|.++|-+|...|=..+ +.++ ..+. .+||+ +.+. +++...|..|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~-~~~q---~~la~wa~~~f~~--~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQN-RSGQ---QDLIEWFREKFGK--DISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSS-CCCH---HHHHHHHHHHHSS--CCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCC-CCCH---HHHHHHHHHHHCC--CCcHHHHHHHHhh
Confidence 7899999999999999999 5553 2443 35676 4421 4888889888744
No 135
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=28.34 E-value=49 Score=24.48 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=32.0
Q ss_pred eEEEEeccee----eeecccc--chhhhhcC--CceEEEecCCcceeccccccccccccccc
Q 036145 318 RSTVFINDVA----FEVVAGP--FNVREAFG--EDAVLINSSGQPVLTNEWGVTLQSLNHGA 371 (375)
Q Consensus 318 ~~tVfIn~va----feV~~Gp--fnVr~~FG--~davLihssG~pv~tne~Gvtl~sLqhGa 371 (375)
.++|.|||.+ +|++.|. -++.+..| .+.++|--.|+.|+-|+ .|+-|.
T Consensus 4 ~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l~~~~~~v~vavN~~~v~~~~------~L~~gD 59 (70)
T 1ryj_A 4 GMKFTVITDDGKKILESGAPRRIKDVLGELEIPIETVVVKKNGQIVIDEE------EIFDGD 59 (70)
T ss_dssp CEEEEEEETTEEEEEEESSCCBHHHHHHHTTCCTTTEEEEETTEECCTTS------BCCTTC
T ss_pred eEEEEEeCccCceeEECCCCCcHHHHHHHhCCCCCCEEEEECCEECCCcc------cCCCCC
Confidence 3899999999 9998872 24444444 34455666777777665 566553
No 136
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=27.97 E-value=41 Score=29.61 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCceeeccCcch
Q 036145 82 PPRDEIRRIRAQLQEYGQVGDANVFYWFQNRK 113 (375)
Q Consensus 82 Ps~~eR~qLA~~L~~~g~LtE~qVkvWFQNRR 113 (375)
.+.++.++|.+.|.. -.+-.|-.||=|||
T Consensus 59 Lt~~ei~~l~~~i~~---~~~~~ip~w~lNr~ 87 (152)
T 3iz6_M 59 LSAEEMDRLMAVVHN---PRQFKVPDWFLNRK 87 (152)
T ss_dssp SCHHHHHHHHHHHHS---CSSCCCCCCSCSCC
T ss_pred CCHHHHHHHHHHHHh---hcccCcchhhhhhh
Confidence 445555555555541 11233667999998
No 137
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=27.67 E-value=11 Score=30.09 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=34.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHhhcCCCCCCceeeccC
Q 036145 57 PKPRWNPKPEQIRILESIFNSG----MVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQ 110 (375)
Q Consensus 57 ~R~Rt~FT~eQL~~LE~~F~~~----~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQ 110 (375)
+..+|.+++++++.|+++|..- ..+.+.+ +|...|... ++++..|..+|.
T Consensus 10 ~~~~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~---el~~~l~~~-gl~~~el~~i~~ 63 (110)
T 1iq3_A 10 PDEPWRITEEQREYYVNQFRSLQPDPSSFISGS---VAKNFFTKS-KLSIPELSYIWE 63 (110)
T ss_dssp CCSSCCCSSSSHHHHHHHHHHHCCSSSSEEEHH---HHHHHCCSS-SCSSCCHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHHCCCCCCeEcHH---HHHHHHHHc-CCCHHHHHHHHH
Confidence 4568999999999999999762 2245554 455555443 488888886653
No 138
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=27.48 E-value=32 Score=26.59 Aligned_cols=53 Identities=9% Similarity=-0.092 Sum_probs=33.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHhhcCCCCCCceeecc
Q 036145 55 PEPKPRWNPKPEQIRILESIFNSG----MVNPPRDEIRRIRAQLQEYGQVGDANVFYWF 109 (375)
Q Consensus 55 p~~R~Rt~FT~eQL~~LE~~F~~~----~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWF 109 (375)
+....+..++++|++.|+++|..- ..+.+.++-..+.+.|+ ..+++..++..|
T Consensus 9 ~~~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~--~~~~~~~~~~l~ 65 (161)
T 3fwb_A 9 QSGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALG--FELPKREILDLI 65 (161)
T ss_dssp CTTTTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTT--CCCCHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC--CCCCHHHHHHHH
Confidence 345567789999999999999752 23567666555555553 124444444333
No 139
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=27.35 E-value=11 Score=32.42 Aligned_cols=54 Identities=6% Similarity=0.211 Sum_probs=36.1
Q ss_pred CCCCCCCHHH-HHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhh
Q 036145 58 KPRWNPKPEQ-IRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSK 117 (375)
Q Consensus 58 R~Rt~FT~eQ-L~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~K 117 (375)
|+|..-+.++ |+.-.++|.+.- | ......+||++.+ ++..-|++.|.||..=..
T Consensus 38 ~~~~~~~r~~Il~AA~~lf~~~G-~-~~~t~~~IA~~aG----vs~~tlY~~F~sK~~L~~ 92 (255)
T 3g1o_A 38 RPSGDDRELAILATAENLLEDRP-L-ADISVDDLAKGAG----ISRPTFYFYFPSKEAVLL 92 (255)
T ss_dssp ---CCHHHHHHHHHHHHHHTTSC-G-GGCCHHHHHHHHT----CCHHHHHHHCSSHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHcC-C-ccCcHHHHHHHhC----CCHHHHHHHcCCHHHHHH
Confidence 3333334444 566777888874 4 3345678999997 999999999999865444
No 140
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=26.67 E-value=44 Score=25.99 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=33.0
Q ss_pred CCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCc
Q 036145 58 KPRWNPKPEQIRILESIFNS----GMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQN 111 (375)
Q Consensus 58 R~Rt~FT~eQL~~LE~~F~~----~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQN 111 (375)
..-..++++|++.|+.+|.. +..+.+.++-..+.+.|+ ..+++..|+.+|.+
T Consensus 7 ~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g--~~~~~~~~~~~~~~ 62 (156)
T 1wdc_B 7 GVLTKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLG--RAPDDKELTAMLKE 62 (156)
T ss_dssp -----CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHS--SCCCHHHHHHHHTT
T ss_pred chhccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHHh
Confidence 33456899999999999964 223678777766666664 23566667766643
No 141
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=26.14 E-value=26 Score=29.45 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=32.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHhhcCCCCCCcee-ec
Q 036145 57 PKPRWNPKPEQIRILESIFNSGM---VNPPRDEIRRIRAQLQEYGQVGDANVF-YW 108 (375)
Q Consensus 57 ~R~Rt~FT~eQL~~LE~~F~~~~---~yPs~~eR~qLA~~L~~~g~LtE~qVk-vW 108 (375)
.+..|..|++++..++++|..-. .|.+.+ +++.-|.+ .+|++..+. +|
T Consensus 21 ~~~~W~it~ee~~~y~~iF~~lD~~dG~Isg~---elr~~~~~-sgLp~~~L~~Iw 72 (121)
T 3fia_A 21 SLDTWAITVEERAKHDQQFHSLKPISGFITGD---QARNFFFQ-SGLPQPVLAQIW 72 (121)
T ss_dssp CTTTSCCCHHHHHHHHHHHHHTCCBTTBEEHH---HHHHHHGG-GCCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCeECHH---HHHHHHHH-cCCCHHHHHHHH
Confidence 34589999999999999998753 234443 44444432 347766655 67
No 142
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=26.02 E-value=8.5 Score=32.61 Aligned_cols=45 Identities=4% Similarity=0.200 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhh
Q 036145 68 IRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKH 118 (375)
Q Consensus 68 L~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KR 118 (375)
|+.-.++|.+.- | ......+||++.+ ++..-|+..|.||..=..-
T Consensus 50 l~aA~~lf~e~G-~-~~~t~~~IA~~aG----vs~~tlY~~F~sK~~L~~a 94 (236)
T 3q0w_A 50 LATAENLLEDRP-L-ADISVDDLAKGAG----ISRPTFYFYFPSKEAVLLT 94 (236)
T ss_dssp HHHHHHHHHHSC-G-GGCCHHHHHHHHT----CCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcC-c-ccCCHHHHHHHhC----CcHHHHHHHCCCHHHHHHH
Confidence 455667888874 3 3345678999997 9999999999998654433
No 143
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=25.74 E-value=39 Score=25.77 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=27.5
Q ss_pred eEEEEeccee---eeeccc--cchhhhhcC--CceEEEecCCcceeccc
Q 036145 318 RSTVFINDVA---FEVVAG--PFNVREAFG--EDAVLINSSGQPVLTNE 359 (375)
Q Consensus 318 ~~tVfIn~va---feV~~G--pfnVr~~FG--~davLihssG~pv~tne 359 (375)
+|+|.+||-. .|++.| --|+-+.+| .+-|+|=-.|++|+-|+
T Consensus 2 ~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 2 NVTVEVVGEETSEVAVDDDGTYADLVRAVDLSPHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp EEEEECSSSSEEEEECSTTCSHHHHHHTTCCCSSCCCEECCCCCCCTTS
T ss_pred EEEEEEeCccceeEEcCCCCcHHHHHHHcCCCcceEEEEECCEECCHHH
Confidence 5788888876 778776 445555566 22334555777887776
No 144
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=25.25 E-value=25 Score=27.16 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=30.5
Q ss_pred CCCCCHHHHHH-HHHHHhcCCCCCCH-HHHHHHHHHHhhcCCCCCCceeecc
Q 036145 60 RWNPKPEQIRI-LESIFNSGMVNPPR-DEIRRIRAQLQEYGQVGDANVFYWF 109 (375)
Q Consensus 60 Rt~FT~eQL~~-LE~~F~~~~~yPs~-~eR~qLA~~L~~~g~LtE~qVkvWF 109 (375)
|..||+|+... ++.+.+.+..|++. ....+||++|+ |+...|+.|-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~g----Is~~tl~~W~ 51 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIG----CTPETLRVWV 51 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT----SCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHC----cCHHHHHHHH
Confidence 45799998854 44444443112332 35678999997 9999999994
No 145
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=25.21 E-value=23 Score=28.06 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhh
Q 036145 66 EQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSK 117 (375)
Q Consensus 66 eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~K 117 (375)
.=|+.-.++|.+.- | ......+||++.+ ++...|++.|.||..=..
T Consensus 16 ~Il~aA~~lf~~~G-~-~~~t~~~IA~~ag----vs~~t~Y~~F~sK~~L~~ 61 (199)
T 3on2_A 16 VLLARAESTLEKDG-V-DGLSLRQLAREAG----VSHAAPSKHFRDRQALLD 61 (199)
T ss_dssp HHHHHHHHHHHHHC-G-GGCCHHHHHHHTC---------CCCSSSSHHHHHH
T ss_pred HHHHHHHHHHHhcC-h-hhhhHHHHHHHhC----CChHHHHHHhCCHHHHHH
Confidence 33455667787764 3 3345568999887 999999999999765443
No 146
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=25.18 E-value=59 Score=24.68 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHhhcCCCCCCceeeccCc
Q 036145 63 PKPEQIRILESIFNSG----MVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQN 111 (375)
Q Consensus 63 FT~eQL~~LE~~F~~~----~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQN 111 (375)
||++|++.|+++|..- ..+.+..+-..+.+.|+. .+++..|+..|..
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~--~~~~~~~~~~~~~ 51 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGK--NPTDEYLEGMMSE 51 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSC--CCCHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCC--CCCHHHHHHHHHh
Confidence 6899999999999753 235777766666555542 3566667666654
No 147
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=24.99 E-value=15 Score=30.86 Aligned_cols=44 Identities=5% Similarity=0.003 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhh
Q 036145 62 NPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSR 115 (375)
Q Consensus 62 ~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK 115 (375)
.+++.|.++|+-.|..+. ..++||+.|+ +++..|+.+...=|.|
T Consensus 198 ~L~~~~r~vl~l~~~~g~------s~~EIA~~lg----is~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 198 ELDERERLIVYLRYYKDQ------TQSEVASRLG----ISQVQMSRLEKKILQH 241 (243)
T ss_dssp ------------------------------------------------------
T ss_pred hCCHHHHHHHHHHHhcCC------CHHHHHHHHC----cCHHHHHHHHHHHHHH
Confidence 367777788887776653 2357899997 9999999877644443
No 148
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.65 E-value=19 Score=31.76 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=35.1
Q ss_pred CCCCCCCCCCCCHHHH-HHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchh
Q 036145 53 RSPEPKPRWNPKPEQI-RILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKS 114 (375)
Q Consensus 53 rsp~~R~Rt~FT~eQL-~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRA 114 (375)
+++.|++|...|.++| +.-.++|.+.- | ..-...+||++++ ++..-++..|.||..
T Consensus 9 ~r~~r~~r~~~tr~~Il~AA~~l~~e~G-~-~~~S~~~IA~~aG----vs~~tlY~hF~sK~~ 65 (243)
T 2g7l_A 9 SRRDRPAKPALSRRWIVDTAVALMRAEG-L-EKVTMRRLAQELD----TGPASLYVYVANTAE 65 (243)
T ss_dssp -------CCCCCHHHHHHHHHHHHHHHC-S-SSCCHHHHHHHTT----SCHHHHTTTCCSHHH
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHHhcC-c-hhcCHHHHHHHHC----CChhHHHHHcCCHHH
Confidence 3444555666777764 45566676663 4 3334568999997 999999999998643
No 149
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=24.48 E-value=11 Score=30.48 Aligned_cols=42 Identities=12% Similarity=0.394 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhh
Q 036145 68 IRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSR 115 (375)
Q Consensus 68 L~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK 115 (375)
|+...++|.+.. | ......+||++.+ ++..-++.+|.||-.=
T Consensus 37 l~aa~~l~~~~G-~-~~~tv~~Ia~~ag----vs~~t~Y~~F~sK~~L 78 (218)
T 3dcf_A 37 IKVATELFREKG-Y-YATSLDDIADRIG----FTKPAIYYYFKSKEDV 78 (218)
T ss_dssp HHHHHHHHHHTC-T-TTCCHHHHHHHHT----CCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcC-c-ccCcHHHHHHHhC----CCHHHHHHHcCCHHHH
Confidence 356677888874 4 3345678999997 9999999999998653
No 150
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=24.15 E-value=41 Score=23.94 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=28.9
Q ss_pred CCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHhhcCCCCCCc
Q 036145 59 PRWNPKPEQIRILESIFNS----GMVNPPRDEIRRIRAQLQEYGQVGDAN 104 (375)
Q Consensus 59 ~Rt~FT~eQL~~LE~~F~~----~~~yPs~~eR~qLA~~L~~~g~LtE~q 104 (375)
....++++|++.|+.+|.. +..+.+..+...+.+.|+. .+++..
T Consensus 4 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~--~~~~~~ 51 (86)
T 1j7q_A 4 KARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQ--TYTKRE 51 (86)
T ss_dssp CCCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSC--CCSHHH
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcC--CCCHHH
Confidence 3456889999999999964 2236777776666665541 344444
No 151
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=24.03 E-value=22 Score=31.11 Aligned_cols=49 Identities=16% Similarity=0.074 Sum_probs=35.6
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhh
Q 036145 58 KPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSK 117 (375)
Q Consensus 58 R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~K 117 (375)
.+...+|+.|+++|.-+ ..+. . -++||+.|+ |+++.|+...+|=|.|..
T Consensus 169 ~~~~~Lt~~e~~vl~~~-~~g~--s----~~eIa~~l~----is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 169 EDAAWLDPKEATYLRWI-AVGK--T----MEEIADVEG----VKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp ECCCCCCHHHHHHHHHH-TTTC--C----HHHHHHHHT----CCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHH-HcCC--C----HHHHHHHHC----cCHHHHHHHHHHHHHHhC
Confidence 34567999999999885 4553 2 357999997 999999977665444433
No 152
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=23.40 E-value=49 Score=25.07 Aligned_cols=46 Identities=9% Similarity=-0.029 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHhhcCCCCCCceeecc
Q 036145 62 NPKPEQIRILESIFNSG----MVNPPRDEIRRIRAQLQEYGQVGDANVFYWF 109 (375)
Q Consensus 62 ~FT~eQL~~LE~~F~~~----~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWF 109 (375)
.+|++|++.|+++|..- ..+.+..+...+...|+ ..+++..+..+|
T Consensus 1 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~--~~~~~~~~~~l~ 50 (149)
T 2mys_C 1 EFSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALG--QNPTNAEINKIL 50 (149)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHH
Confidence 37899999999999642 23566666655555553 124444454444
No 153
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=23.04 E-value=30 Score=28.40 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHHhhcCCCCCCceee
Q 036145 62 NPKPEQIRILESIFNS------GMVNPPRDEIRRIRAQLQEYGQVGDANVFY 107 (375)
Q Consensus 62 ~FT~eQL~~LE~~F~~------~~~yPs~~eR~qLA~~L~~~g~LtE~qVkv 107 (375)
.+|++||++|.++|.. +..+.+..+...+-+.|+. ++++..|+.
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~--~~t~~el~~ 51 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGM--NPTEAQVHQ 51 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTC--CCCHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCC--CCCHHHHHH
Confidence 4799999999999963 2236777766666666652 345555543
No 154
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=22.63 E-value=23 Score=30.24 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=35.1
Q ss_pred CCCCCCCCCCHHHH-HHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhh
Q 036145 55 PEPKPRWNPKPEQI-RILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSR 115 (375)
Q Consensus 55 p~~R~Rt~FT~eQL-~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK 115 (375)
+.+++|...|.++| +.-.++|.+.- | ..-...+||++++ ++..-|+..|.||..=
T Consensus 17 ~~~~~r~~~tr~~Il~aA~~l~~~~G-~-~~~s~~~IA~~aG----vs~~tlY~~F~~K~~L 72 (211)
T 3fiw_A 17 LYFQGMTKMNRETVITEALDLLDEVG-L-DGVSTRRLAKRLG----VEQPSLYWYFRTKRDL 72 (211)
T ss_dssp -------CCCHHHHHHHHHHHHHHHC-G-GGCCHHHHHHHHT----SCTHHHHTTCSSHHHH
T ss_pred CCcccccccCHHHHHHHHHHHHHhcC-c-ccCCHHHHHHHhC----CChhHHHHHcCCHHHH
Confidence 34566666777764 55667777763 3 3345678999997 9999999999886543
No 155
>3gc6_A ECTO-NAD+ glycohydrolase (CD38 molecule); cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG; 1.51A {Bos taurus} SCOP: c.23.14.3 PDB: 3ghh_A* 3kou_A* 3gh3_A*
Probab=22.15 E-value=49 Score=31.35 Aligned_cols=39 Identities=23% Similarity=0.492 Sum_probs=31.1
Q ss_pred cceEEEEecceeeeeccccchhhhhcCC------------ceEEEecCCcceeccc
Q 036145 316 AARSTVFINDVAFEVVAGPFNVREAFGE------------DAVLINSSGQPVLTNE 359 (375)
Q Consensus 316 ~a~~tVfIn~vafeV~~GpfnVr~~FG~------------davLihssG~pv~tne 359 (375)
-+.|+|+.||-. .||||.+..||+ .+.|||.-|.| +++-
T Consensus 162 ~G~V~VmLNGS~----~~af~~~S~Fg~vElpnL~~~k~l~i~Vvh~i~~~-~~es 212 (247)
T 3gc6_A 162 CNTVRVVLNGSL----ENAFDSMSIFGRVQAPNLRPQVELEAWLVHDTGKP-PSDS 212 (247)
T ss_dssp CSEEEEEEETTS----SCSCCTTSHHHHTTGGGCCTTCEEEEEEEECTTSC-CSCC
T ss_pred CCcEEEEecCCC----CCCcCCCCcceeeeccCCCCCceEEEEEEeCCCCC-ccCc
Confidence 368999999986 499999999993 48999987766 4443
No 156
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=21.77 E-value=40 Score=25.60 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=30.7
Q ss_pred EEEEecceeeeeccccchhhhh---cC--CceEEEecCCcceeccccccc
Q 036145 319 STVFINDVAFEVVAGPFNVREA---FG--EDAVLINSSGQPVLTNEWGVT 363 (375)
Q Consensus 319 ~tVfIn~vafeV~~GpfnVr~~---FG--~davLihssG~pv~tne~Gvt 363 (375)
|+|.|||.++|+ .| ..|.+. +| .+.|.|=-.|+.||-++|.-+
T Consensus 1 M~I~vNG~~~e~-~~-~Tl~~LL~~l~~~~~~vAV~vNg~iVpr~~~~~~ 48 (73)
T 2kl0_A 1 MLVTINGEQREV-QS-ASVAALMTELDCTGGHFAVALNYDVVPRGKWDET 48 (73)
T ss_dssp CCEEETTEEECC-CC-SBHHHHHHHTTCCSSSCEEEESSSEECHHHHTTC
T ss_pred CEEEECCEEEEc-CC-CcHHHHHHHcCCCCCcEEEEECCEECChHHcCcc
Confidence 468999999999 44 677654 44 344456667899999888643
No 157
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=21.68 E-value=39 Score=30.73 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=37.5
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhh
Q 036145 58 KPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119 (375)
Q Consensus 58 R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk 119 (375)
..+..+|+.|+++|.-+. .+. . .++||+.|+ |+++.|+....|=+.|..-+
T Consensus 193 ~~~~~Lt~re~~vl~~~~-~G~--s----~~eIA~~l~----is~~TV~~~~~~~~~kl~~~ 243 (265)
T 3qp6_A 193 PSNMPLSQREYDIFHWMS-RGK--T----NWEIATILN----ISERTVKFHVANVIRKLNAN 243 (265)
T ss_dssp CCCCCCCHHHHHHHHHHH-TTC--C----HHHHHHHHT----SCHHHHHHHHHHHHHHTTCS
T ss_pred CCcCCCCHHHHHHHHHHH-cCC--C----HHHHHHHHC----cCHHHHHHHHHHHHHHhCCC
Confidence 344689999999999985 553 2 358999997 99999998766655554433
No 158
>3ktp_B Trinucleotide repeat-containing gene 6C protein; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding; 1.50A {Homo sapiens}
Probab=21.39 E-value=31 Score=21.75 Aligned_cols=11 Identities=45% Similarity=0.990 Sum_probs=9.5
Q ss_pred CCCCCCCcccc
Q 036145 3 SSNRNWPSMFK 13 (375)
Q Consensus 3 ssnrhWPsmfk 13 (375)
+||+.||--|+
T Consensus 1 ~s~~sWpPef~ 11 (22)
T 3ktp_B 1 GSSINWPPEFH 11 (26)
T ss_pred CCcccCCcccc
Confidence 58999999887
No 159
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=20.78 E-value=12 Score=30.71 Aligned_cols=46 Identities=13% Similarity=0.126 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhh
Q 036145 63 PKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKH 118 (375)
Q Consensus 63 FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KR 118 (375)
+++.|.++|.-.|-.+. +- ++||+.|+ +++..|+.+...=|.|.|+
T Consensus 136 L~~~~r~vl~l~~~~g~--s~----~eIA~~lg----is~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDL--TH----RELAAETG----LPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SCHHHHHHHHHHHHSCC--SS----CCSTTTCC----CCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC--CH----HHHHHHHC----cCHHHHHHHHHHHHHHHHH
Confidence 34555555555444442 11 13555554 8888887766544444443
Done!