BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036146
MLSLGNPGLRNVHGILGSGIMTSFLIHAALGLQLGLSY

High Scoring Gene Products

Symbol, full name Information P value
AT2G36885 protein from Arabidopsis thaliana 1.0e-08

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036146
        (38 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006302 - symbol:AT2G36885 "AT2G36885" speci...   134  1.0e-08   1


>TAIR|locus:505006302 [details] [associations]
            symbol:AT2G36885 "AT2G36885" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0005886 "plasma membrane"
            evidence=IDA] GO:GO:0005886 EMBL:CP002685 GenomeReviews:CT485783_GR
            EMBL:AC006922 EMBL:AY086893 EMBL:BT002349 IPI:IPI00541335
            RefSeq:NP_565853.1 UniGene:At.22565 STRING:Q8S8F1 PaxDb:Q8S8F1
            PRIDE:Q8S8F1 EnsemblPlants:AT2G36885.1 GeneID:818261
            KEGG:ath:AT2G36885 TAIR:At2g36885 eggNOG:NOG80523
            HOGENOM:HOG000012736 InParanoid:Q8S8F1 OMA:TLFLIHA PhylomeDB:Q8S8F1
            ProtClustDB:CLSN2688739 ArrayExpress:Q8S8F1 Genevestigator:Q8S8F1
            InterPro:IPR025067 Pfam:PF13301 Uniprot:Q8S8F1
        Length = 256

 Score = 134 (52.2 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 26/32 (81%), Positives = 28/32 (87%)

Query:     7 PGLRNVHGILGSGIMTSFLIHAALGLQLGLSY 38
             P LRNVHGILGSGIM  FL+HAA GLQLGLS+
Sbjct:   225 PELRNVHGILGSGIMALFLVHAAFGLQLGLSF 256


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.145   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       38        38   0.00091  102 3  11 22  0.46    25
                                                     29  0.40    23


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  270 (29 KB)
  Total size of DFA:  42 KB (2055 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  4.98u 0.15s 5.13t   Elapsed:  00:00:01
  Total cpu time:  4.98u 0.15s 5.13t   Elapsed:  00:00:01
  Start:  Sat May 11 02:05:01 2013   End:  Sat May 11 02:05:02 2013

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