Query 036146
Match_columns 38
No_of_seqs 36 out of 38
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 16:50:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gd3_A NI/Fe-hydrogenase 1 B-t 84.2 1.5 5E-05 26.2 3.8 29 5-33 176-204 (235)
2 1ijd_A Light-harvesting protei 78.6 2 6.7E-05 22.9 2.7 18 13-30 17-34 (53)
3 1nkz_A Light-harvesting protei 78.5 2 6.7E-05 22.9 2.7 18 13-30 17-34 (53)
4 1kqf_C FDH-N gamma, formate de 76.7 3.8 0.00013 23.8 3.8 27 6-32 148-174 (217)
5 1lgh_A LH II, B800/850, light 65.8 11 0.00037 19.9 3.7 23 8-30 15-37 (56)
6 4gd3_A NI/Fe-hydrogenase 1 B-t 60.8 13 0.00043 22.1 3.8 24 9-32 59-82 (235)
7 1vf5_A Cytochrome B6; photosyn 52.4 22 0.00076 22.4 4.1 28 8-35 81-108 (215)
8 3cx5_C Cytochrome B-C1 complex 43.5 33 0.0011 23.3 4.0 28 8-35 77-104 (385)
9 2qjy_A Cytochrome B; cytochrom 42.4 34 0.0012 23.7 4.0 28 8-35 92-119 (445)
10 1pp9_C Cytochrome B; cytochrom 40.2 40 0.0014 22.8 4.0 28 8-35 78-105 (379)
11 3v42_A Folliculin; tumor suppr 31.7 38 0.0013 21.5 2.7 28 7-34 7-34 (226)
12 2lch_A Protein OR38; structura 28.7 34 0.0012 18.0 1.9 16 7-22 41-56 (113)
13 1tqg_A Chemotaxis protein CHEA 25.9 42 0.0014 17.2 1.9 16 7-22 40-55 (105)
14 2lat_A Dolichyl-diphosphooligo 23.7 74 0.0025 15.5 3.0 23 9-31 7-29 (37)
15 2wdq_D Succinate dehydrogenase 22.3 67 0.0023 17.5 2.4 15 19-33 63-77 (115)
16 1rkl_A Dolichyl-diphosphooligo 21.6 83 0.0028 15.2 2.4 22 8-29 6-27 (36)
No 1
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=84.17 E-value=1.5 Score=26.20 Aligned_cols=29 Identities=14% Similarity=0.029 Sum_probs=25.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036146 5 GNPGLRNVHGILGSGIMTSFLIHAALGLQ 33 (38)
Q Consensus 5 g~~~lR~~HayLGs~i~~lllvH~~lGLq 33 (38)
+.+..|.+|.++.-.++++..+|....+.
T Consensus 176 ~~~~~~~iH~~~a~~l~~~v~lHv~aal~ 204 (235)
T 4gd3_A 176 NSMDIHSWHRLGMWLIGAFVIGHVYMALR 204 (235)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999887653
No 2
>1ijd_A Light-harvesting protein B-800/820, alpha chain; pigment-protein complex, alpha-helix apoproteins, intergral protein, photosynthesis; HET: FME RPA BCL; 3.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1
Probab=78.55 E-value=2 Score=22.94 Aligned_cols=18 Identities=39% Similarity=0.600 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036146 13 HGILGSGIMTSFLIHAAL 30 (38)
Q Consensus 13 HayLGs~i~~lllvH~~l 30 (38)
=-+||+++++.++||.+.
T Consensus 17 Pl~LgaVav~a~lVH~av 34 (53)
T 1ijd_A 17 PLMLGAVAITALLVHAAV 34 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 358999999999999875
No 3
>1nkz_A Light-harvesting protein B-800/850, alpha chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_A* 2fkw_A*
Probab=78.54 E-value=2 Score=22.93 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036146 13 HGILGSGIMTSFLIHAAL 30 (38)
Q Consensus 13 HayLGs~i~~lllvH~~l 30 (38)
=-+||+++++.++||.+.
T Consensus 17 Pl~LgaVav~a~lVH~av 34 (53)
T 1nkz_A 17 PALLGSVTVIAILVHLAI 34 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 357999999999999875
No 4
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=76.70 E-value=3.8 Score=23.81 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=23.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhh
Q 036146 6 NPGLRNVHGILGSGIMTSFLIHAALGL 32 (38)
Q Consensus 6 ~~~lR~~HayLGs~i~~lllvH~~lGL 32 (38)
.+..|.+|.++.-.++++.++|....+
T Consensus 148 ~~~~~~iH~~~a~~l~~~v~~Hv~~al 174 (217)
T 1kqf_C 148 VRYSLLIHAAAGIILIHAILIHMYMAF 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999998765
No 5
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=65.77 E-value=11 Score=19.95 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 036146 8 GLRNVHGILGSGIMTSFLIHAAL 30 (38)
Q Consensus 8 ~lR~~HayLGs~i~~lllvH~~l 30 (38)
.-|..=+.+|+.+...++||.++
T Consensus 15 P~~~L~~l~~~v~vlAllIH~~l 37 (56)
T 1lgh_A 15 PSTWLPVIWIVATVVAIAVHAAV 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999875
No 6
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=60.85 E-value=13 Score=22.08 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 036146 9 LRNVHGILGSGIMTSFLIHAALGL 32 (38)
Q Consensus 9 lR~~HayLGs~i~~lllvH~~lGL 32 (38)
.|..|-++|-++++++++..+.++
T Consensus 59 ~~~~H~~~G~~~~~l~~~Rl~w~~ 82 (235)
T 4gd3_A 59 IRLIHFSAGMVFTVVLLMRIYWAF 82 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999887765
No 7
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=52.38 E-value=22 Score=22.40 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 036146 8 GLRNVHGILGSGIMTSFLIHAALGLQLG 35 (38)
Q Consensus 8 ~lR~~HayLGs~i~~lllvH~~lGLqLG 35 (38)
-.|..|++=.|...+.+.+|..=|+--|
T Consensus 81 liR~~H~~gAs~ffi~~ylHi~Rglyyg 108 (215)
T 1vf5_A 81 LIRSIHRWSASMMVLMMILHVFRVYLTG 108 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999999998776443
No 8
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=43.50 E-value=33 Score=23.27 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 036146 8 GLRNVHGILGSGIMTSFLIHAALGLQLG 35 (38)
Q Consensus 8 ~lR~~HayLGs~i~~lllvH~~lGLqLG 35 (38)
-.|+.|++=.|...+.+.+|..=|+--|
T Consensus 77 liR~~H~~gAs~ffi~iylHi~Rglyyg 104 (385)
T 3cx5_C 77 ILRYLHANGASFFFMVMFMHMAKGLYYG 104 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4799999999999999999998877554
No 9
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=42.43 E-value=34 Score=23.67 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 036146 8 GLRNVHGILGSGIMTSFLIHAALGLQLG 35 (38)
Q Consensus 8 ~lR~~HayLGs~i~~lllvH~~lGLqLG 35 (38)
-.|+.|++=.|...+.+.+|..=|+--|
T Consensus 92 liR~~H~~gAs~ffi~iylHi~Rglyyg 119 (445)
T 2qjy_A 92 MLRYLHANGASLFFIAVYLHIFRGLYYG 119 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4799999999999999999998777554
No 10
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=40.23 E-value=40 Score=22.76 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 036146 8 GLRNVHGILGSGIMTSFLIHAALGLQLG 35 (38)
Q Consensus 8 ~lR~~HayLGs~i~~lllvH~~lGLqLG 35 (38)
-.|+.|++=-|...+.+.+|..=|+--|
T Consensus 78 liR~~H~~gAs~ffi~~ylHi~Rglyyg 105 (379)
T 1pp9_C 78 IIRYMHANGASMFFICLYMHVGRGLYYG 105 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999998776443
No 11
>3v42_A Folliculin; tumor suppressor, protein binding; 2.00A {Homo sapiens}
Probab=31.73 E-value=38 Score=21.45 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=25.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 036146 7 PGLRNVHGILGSGIMTSFLIHAALGLQL 34 (38)
Q Consensus 7 ~~lR~~HayLGs~i~~lllvH~~lGLqL 34 (38)
.++|.+.-.||.-..-.++.|.+.|-|+
T Consensus 7 ~SLr~l~~vlG~~~F~~l~~~vl~GnQi 34 (226)
T 3v42_A 7 KSLRHMRQVLGAPSFRMLAWHVLMGNQV 34 (226)
T ss_dssp CCHHHHHHHHCHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHChHHHHHHHHHHhcCCEE
Confidence 4799999999999999999999999875
No 12
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=28.74 E-value=34 Score=18.03 Aligned_cols=16 Identities=19% Similarity=-0.045 Sum_probs=13.4
Q ss_pred chhHHHHHHHHHHHHH
Q 036146 7 PGLRNVHGILGSGIMT 22 (38)
Q Consensus 7 ~~lR~~HayLGs~i~~ 22 (38)
.-.|.+|-+=||+.+.
T Consensus 41 ~l~R~~HTlKGsa~~~ 56 (113)
T 2lch_A 41 KIYRLVHTMKEITETM 56 (113)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHhc
Confidence 4579999999998874
No 13
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=25.85 E-value=42 Score=17.25 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=13.2
Q ss_pred chhHHHHHHHHHHHHH
Q 036146 7 PGLRNVHGILGSGIMT 22 (38)
Q Consensus 7 ~~lR~~HayLGs~i~~ 22 (38)
.-.|.+|.+=||+.+.
T Consensus 40 ~l~r~~HtLKGsa~~~ 55 (105)
T 1tqg_A 40 EAFRALHTLKGMAGTM 55 (105)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHhc
Confidence 4579999999998764
No 14
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=23.70 E-value=74 Score=15.45 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 036146 9 LRNVHGILGSGIMTSFLIHAALG 31 (38)
Q Consensus 9 lR~~HayLGs~i~~lllvH~~lG 31 (38)
+-..=-.||+.+|.+.++.=.+.
T Consensus 7 L~~lan~lG~~~~~LIVlYH~v~ 29 (37)
T 2lat_A 7 LAIFANMLGVSLFLLVVLYHYVA 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445679999998876544433
No 15
>2wdq_D Succinate dehydrogenase hydrophobic membrane ANCH subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* 2wp9_D* 2wu2_D* 2ws3_D* 2wu5_D*
Probab=22.32 E-value=67 Score=17.51 Aligned_cols=15 Identities=40% Similarity=0.465 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhh
Q 036146 19 GIMTSFLIHAALGLQ 33 (38)
Q Consensus 19 ~i~~lllvH~~lGLq 33 (38)
..+...+.|+..|+|
T Consensus 63 l~l~~~~~H~~~Gir 77 (115)
T 2wdq_D 63 LALFSILIHAWIGMW 77 (115)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667889999986
No 16
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=21.58 E-value=83 Score=15.22 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 036146 8 GLRNVHGILGSGIMTSFLIHAA 29 (38)
Q Consensus 8 ~lR~~HayLGs~i~~lllvH~~ 29 (38)
.+-..=-.||+.+|.+.++.=.
T Consensus 6 qL~~lan~lG~~~~~LIvlYH~ 27 (36)
T 1rkl_A 6 QLNSLAITFGIVMMTLIVIYHA 27 (36)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556799999988765433
Done!