BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036150
MVSYYRVLRRKRTKKYAVKRKAVGIWSCKYCGKVKAGALNAATLAAFTALPAAAAALLTF
SSTLATSQAFSAACCAS

High Scoring Gene Products

Symbol, full name Information P value
AT3G60245 protein from Arabidopsis thaliana 1.9e-05
AT3G10950 protein from Arabidopsis thaliana 3.9e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036150
        (77 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006406 - symbol:AT3G60245 species:3702 "Ara...   100  1.9e-05   1
TAIR|locus:2085532 - symbol:AT3G10950 species:3702 "Arabi...    97  3.9e-05   1


>TAIR|locus:505006406 [details] [associations]
            symbol:AT3G60245 species:3702 "Arabidopsis thaliana"
            [GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
            "translation" evidence=IEA;ISS] [GO:0042254 "ribosome biogenesis"
            evidence=ISS] [GO:0022625 "cytosolic large ribosomal subunit"
            evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
            InterPro:IPR002674 InterPro:IPR011331 InterPro:IPR011332
            Pfam:PF01780 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
            GO:GO:0006412 GO:GO:0003735 EMBL:AL163852 KO:K02921 GO:GO:0022625
            PIR:T49219 eggNOG:COG1997 HOGENOM:HOG000229493
            ProtClustDB:CLSN2684048 Gene3D:2.20.25.30 SUPFAM:SSF57829
            TIGRFAMs:TIGR00280 EMBL:AY117196 EMBL:AY080669 EMBL:AY088178
            IPI:IPI00523107 RefSeq:NP_567096.1 UniGene:At.43549
            ProteinModelPortal:Q8RXU5 SMR:Q8RXU5 STRING:Q8RXU5 PRIDE:Q8RXU5
            EnsemblPlants:AT3G60245.1 GeneID:825195 KEGG:ath:AT3G60245
            TAIR:At3g60245 InParanoid:Q8RXU5 OMA:ISTGIWQ PhylomeDB:Q8RXU5
            Genevestigator:Q8RXU5 GermOnline:AT3G60245 Uniprot:Q8RXU5
        Length = 92

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 18/21 (85%), Positives = 18/21 (85%)

Query:    15 KYAVKRKAVGIWSCKYCGKVK 35
             KY VKRKAVGIW CK CGKVK
Sbjct:    44 KYGVKRKAVGIWGCKDCGKVK 64


>TAIR|locus:2085532 [details] [associations]
            symbol:AT3G10950 species:3702 "Arabidopsis thaliana"
            [GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
            "translation" evidence=IEA;ISS] [GO:0042254 "ribosome biogenesis"
            evidence=ISS] [GO:0022625 "cytosolic large ribosomal subunit"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            InterPro:IPR002674 InterPro:IPR011331 InterPro:IPR011332
            Pfam:PF01780 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
            GO:GO:0006412 GO:GO:0003735 EMBL:AC009991 KO:K02921 GO:GO:0022625
            IPI:IPI00547833 RefSeq:NP_187706.1 UniGene:At.53262
            ProteinModelPortal:Q9SRK6 SMR:Q9SRK6 STRING:Q9SRK6 PaxDb:Q9SRK6
            EnsemblPlants:AT3G10950.1 GeneID:820266 KEGG:ath:AT3G10950
            TAIR:At3g10950 eggNOG:COG1997 HOGENOM:HOG000229493
            InParanoid:Q9SRK6 OMA:ISQHAEY PhylomeDB:Q9SRK6
            ProtClustDB:CLSN2684048 Genevestigator:Q9SRK6 GermOnline:AT3G10950
            Gene3D:2.20.25.30 SUPFAM:SSF57829 TIGRFAMs:TIGR00280 Uniprot:Q9SRK6
        Length = 92

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 17/21 (80%), Positives = 18/21 (85%)

Query:    15 KYAVKRKAVGIWSCKYCGKVK 35
             KY+VKRK VGIW CK CGKVK
Sbjct:    44 KYSVKRKVVGIWGCKDCGKVK 64


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.135   0.460    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       77        39   0.00091  102 3  11 22  0.42    25
                                                     29  0.46    23


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  363 (39 KB)
  Total size of DFA:  65 KB (2062 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.98u 0.22s 6.20t   Elapsed:  00:00:00
  Total cpu time:  5.98u 0.22s 6.20t   Elapsed:  00:00:00
  Start:  Sat May 11 02:10:56 2013   End:  Sat May 11 02:10:56 2013

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